charite.christo.metannogen
Class MapEnsgKO

java.lang.Object
  charite.christo.metannogen.MapEnsgKO

All Implemented Interfaces:

Runnable

public class MapEnsgKO
extends Object
implements Runnable

HELP java charite.christo.metannogen.preparation.MapEnsgKO The class MapEnsgKO is used to create a table of RIDs, ENSG and Affymetrix IDs. This may take several seconds. The session may crash. Make sure that all data is saved before starting this.

Constructor Summary

MapEnsgKO()

Method Summary

static boolean	isInitialized()
static void	main(String[] argv)
static void	makeOrthologyEnsg(String hsa)
static Map<String,String[]>	mapENSG_RID()
static Map<String,String[]>	mapRID_ENSG()
void	run()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MapEnsgKO

public MapEnsgKO()

Method Detail

isInitialized

public static boolean isInitialized()

main

public static void main(String[] argv)
                 throws IOException

Throws:

IOException

run

public void run()

Specified by:

run in interface Runnable

makeOrthologyEnsg

public static void makeOrthologyEnsg(String hsa)
                              throws IOException

Throws:

IOException

mapENSG_RID

public static final Map<String,String[]> mapENSG_RID()

mapRID_ENSG

public static final Map<String,String[]> mapRID_ENSG()