charite.christo.metannogen
Class MetannogenFrame

java.lang.Object
  charite.christo.metannogen.MetannogenFrame

All Implemented Interfaces:

ActionListener, KeyListener, MouseListener, EventListener

public class MetannogenFrame
extends Object
implements ActionListener, MouseListener, KeyListener

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Metannogen

INCLUDE_DOC2:Metannogen INCLUDE_DOC2:MetannogenMain INCLUDE_DOC2:Dataset INCLUDE_DOC3:BraceExpansion INCLUDE_DOC2:HyperTextPane

Context menus and Balloon text

As the mouse is moved over an identifier in a text-field, the name of the respective object is shown. For example moving the mouse over the metabolite identifier "C00984" brings up a WIKI:Balloon_help with "D-Galactose". Metannogen associates "C00984" with the "D-Galactose" if KEGG is loaded. The same happens if the mouse is moved over "gal" if a Palsson network has been loaded. Names can not only be found in loaded networks, but may also be provided by a file given after the command line option "-names".

Identifiers or names of metabolites, reactions and datasets have a WIKI:Context_menu. This context menu allows to locate the object in the object hierarchy of the network and to highlight it in the graphical pathway map. Related reactions and datasets can be opened via the context menu. INCLUDE_DOC2:UploadDatasets INCLUDE_DOC2:MetannogenTree INCLUDE_DOC2:PathwayViews INCLUDE_DOC2:MetannogenUserScripts

Metannogen

Introduction
Starting
Datasets
Central Storage
Viewing Kegg Maps
Projects

Constructor Summary

MetannogenFrame()

Method Summary

void	actionPerformed(ActionEvent ev)
static MetannogenTree	getTreeClicked()
static MetannogenTree	getTreeDatasets()
static MetannogenTree	getTreeDatasetsPW()
void	keyPressed(KeyEvent e)
void	keyReleased(KeyEvent e)
void	keyTyped(KeyEvent kev)
void	mouseClicked(MouseEvent mev)
void	mouseEntered(MouseEvent ev)
void	mouseExited(MouseEvent ev)
void	mousePressed(MouseEvent mev)
void	mouseReleased(MouseEvent mev)
static void	selectTab(int i)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MetannogenFrame

public MetannogenFrame()

Method Detail

selectTab

public static void selectTab(int i)

getTreeClicked

public static MetannogenTree getTreeClicked()

getTreeDatasets

public static MetannogenTree getTreeDatasets()

getTreeDatasetsPW

public static MetannogenTree getTreeDatasetsPW()

actionPerformed

public void actionPerformed(ActionEvent ev)

Specified by:

actionPerformed in interface ActionListener

mouseExited

public void mouseExited(MouseEvent ev)

Specified by:

mouseExited in interface MouseListener

mouseEntered

public void mouseEntered(MouseEvent ev)

Specified by:

mouseEntered in interface MouseListener

mouseReleased

public void mouseReleased(MouseEvent mev)

Specified by:

mouseReleased in interface MouseListener

mouseClicked

public void mouseClicked(MouseEvent mev)

Specified by:

mouseClicked in interface MouseListener

mousePressed

public void mousePressed(MouseEvent mev)

Specified by:

mousePressed in interface MouseListener

keyPressed

public void keyPressed(KeyEvent e)

Specified by:

keyPressed in interface KeyListener

keyReleased

public void keyReleased(KeyEvent e)

Specified by:

keyReleased in interface KeyListener

keyTyped

public void keyTyped(KeyEvent kev)

Specified by:

keyTyped in interface KeyListener