charite.christo.metannogen
Class MetannogenUserScripts

java.lang.Object
  charite.christo.metannogen.MetannogenUserScripts

All Implemented Interfaces:

ActionListener, EventListener

public class MetannogenUserScripts
extends Object
implements ActionListener

HELP This Dialog allows

• Export the network as SBML or SQL and to modify the export at Java source code level.
• Process network data
• To validate dataset during input

The Dialog is organized as a tabbed pane with a tab for each category. The specific action is invoked with the right button which is labeled "Export" or "Run" or "Validate". To save screen space this button can be un-docked by dragging with the mouse. The source code can be modified by hitting the "Change"-button.

JCOMPONENT:charite.christo.metannogen.MetannogenUserScripts#newPanel():width: 30em;

For understanding the source code only three Java interfaces and one Java class are important:

• JAVADOC:charite.christo.metannogen.Reaction contains the reactants and products, the compartments and optional attributes.
• JAVADOC:charite.christo.metannogen.ReactionCollection contain arrays of Reaction and Species objects
• JAVADOC:charite.christo.metannogen.Species contain the name and attributes of reactants or products. The Species class is not always required because the Reaction class can return metabolites also as plain String objects.
• JAVADOC:charite.christo.metannogen.Metannogen gives access to the Networks. Network files are loaded according to the -networks=file-list command line option. It also provides a function to create a network from all datasets. Metannogen has the main(String[]) method which is called when metannogen.jar is started.

Field Summary

static String	BUT_LAB_Run
static Object[][]	CLASSES
static int	COL_CLASS
static int	COL_EXT
static int	COL_HEADLINE
static int	COL_TAB

Constructor Summary

MetannogenUserScripts()

Method Summary

void	actionPerformed(ActionEvent ev)
static ChButton	button(Class clazz)
static void	main(String[] argv)
static JComponent	newPanel()
static void	shw(int options)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

BUT_LAB_Run

public static final String BUT_LAB_Run

See Also:

Constant Field Values

COL_CLASS

public static final int COL_CLASS

See Also:

Constant Field Values

COL_TAB

public static final int COL_TAB

See Also:

Constant Field Values

COL_HEADLINE

public static final int COL_HEADLINE

See Also:

Constant Field Values

COL_EXT

public static final int COL_EXT

See Also:

Constant Field Values

CLASSES

public static final Object[][] CLASSES

Constructor Detail

MetannogenUserScripts

public MetannogenUserScripts()

Method Detail

newPanel

public static JComponent newPanel()

shw

public static void shw(int options)

actionPerformed

public void actionPerformed(ActionEvent ev)

Specified by:

actionPerformed in interface ActionListener

button

public static ChButton button(Class clazz)

main

public static void main(String[] argv)