charite.christo.metannogen.hergoGroup
Class BoellingTransporter

java.lang.Object
  charite.christo.metannogen.hergoGroup.BoellingTransporter

public class BoellingTransporter
extends Object

HELP This class acts as a preprocessor of Transporter datasets from C. Boelling and Ramanan. The file is included into the source code: http://olli.charite.de/Forschung/HepatoNet/FlatNet/HC_CB.tsv http://wikiblog.charite.de:8080/display/sysbio/Gene+Ontology+Cross-References I added the following to HC_CB.tsv HC00763 Na HC00113 Cl HC00216 K HC00078 ca2 HC00508 I HC00168 Co HC00262 Mg HC00083 H HC00434 cAMP HC00592 cGMP

Field Summary

static String[]

COMARTMENTS

Constructor Summary

BoellingTransporter()

Method Summary

static boolean	isBoelling(Dataset d)
static void	main(String[] argv)
static Map<String,String>	mapCB_HC()
static Map<String,String>	mapEntrySet()
static Map<String,String>	mapHR_TCB()
static String	process(String s)
static void	setReactionIDWithCompartments(MReaction r) Erleichterung fuer Andreas Skripte

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

COMARTMENTS

public static final String[] COMARTMENTS

Constructor Detail

BoellingTransporter

public BoellingTransporter()

Method Detail

main

public static void main(String[] argv)
                 throws Exception

Throws:

Exception

isBoelling

public static boolean isBoelling(Dataset d)

process

public static String process(String s)

mapEntrySet

public static Map<String,String> mapEntrySet()

mapHR_TCB

public static Map<String,String> mapHR_TCB()

mapCB_HC

public static Map<String,String> mapCB_HC()

setReactionIDWithCompartments

public static void setReactionIDWithCompartments(MReaction r)

Erleichterung fuer Andreas Skripte