charite.christo.strap
Class ExpasyGff

java.lang.Object
  charite.christo.strap.ExpasyGff

public class ExpasyGff
extends java.lang.Object

Field Summary

static int	F_NO_SEC_STRU
static int	F_SEC_STRU

Constructor Summary

ExpasyGff()

Method Summary

static void	load(long options, Protein[] pp, BA log)
static ResidueAnnotation[]	readFeaturesInProteinFile(BA text, int maxLen, Protein... pp)
static java.lang.Thread	thread_load(long options, Protein[] pp, ChRunnable log)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

F_NO_SEC_STRU

public static final int F_NO_SEC_STRU

See Also:

Constant Field Values

F_SEC_STRU

public static final int F_SEC_STRU

See Also:

Constant Field Values

Constructor Detail

ExpasyGff

public ExpasyGff()

Method Detail

thread_load

public static java.lang.Thread thread_load(long options,
                                           Protein[] pp,
                                           ChRunnable log)

load

public static void load(long options,
                        Protein[] pp,
                        BA log)

readFeaturesInProteinFile

public static ResidueAnnotation[] readFeaturesInProteinFile(BA text,
                                                            int maxLen,
                                                            Protein... pp)