charite.christo.strap
Class ProteinList

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JList
                  charite.christo.ChJList
                      charite.christo.strap.ProteinList

All Implemented Interfaces:

HasModiCount, IsEnabled, ProcessEv, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, javax.swing.Scrollable

public class ProteinList
extends ChJList

A JList to select proteins.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JList

javax.swing.JList.DropLocation

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.BaselineResizeBehavior

Field Summary

static long	ACTGN
static long	CALPHA
static long	CHAINS
static long	EC
static long	HETERO3D
static long	IN_3D
static long	IN_ALI
static long	INFERRED_3D
static long	NO_3D_FILE
static long	NO_CALPHA
static long	NO_PDB_ID
static long	NONE
static long	NOT_ACTGN
static long	NOT_IN_ALI
static long	NT
static long	NT_or_ACTGN
static long	NUC3D
static long	PDB_ID
static long	RES_ANNO
static long	RES_SEL
static long	SECSTRU
static long	SEQ_FEATURE
static long	SOLVENT

Fields inherited from class charite.christo.ChJList

KEY_ENABLE_IF_SELECTED, KEY_NO_HELP_ON_RIGHT_CLICK, KEY_UPDATE_ENABLED, OPTIONS_FILES, SEL_STRSTR, SEL_STRSTR_IC

Fields inherited from class javax.swing.JList

HORIZONTAL_WRAP, VERTICAL, VERTICAL_WRAP

Fields inherited from class javax.swing.JComponent

TOOL_TIP_TEXT_KEY, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

ProteinList(long filter)

Method Summary

java.awt.Dimension	getPreferredSize()
boolean	getScrollableTracksViewportWidth()
Protein[]	getSelectedOrAllProteins()
Protein[]	getSelectedProteins()
Protein[]	getSelectedProteinsAtLeast(int atLeast)
boolean	isEnabled(java.lang.Object o)
static boolean	isEnabled(Protein[] pp, long flags)
static boolean	isEnabled(Protein p, long flags)
static Protein[]	onlyProteins(long flags, Protein[] pp)
void	paint(java.awt.Graphics g)
void	paintComponent(java.awt.Graphics g)
javax.swing.JComponent	scrollPane()
ProteinList	selectAll(long filter)
void	setFilter(long filter)

Methods inherited from class charite.christo.ChJList

addOptions, getDndDateien, getList, getOptions, getOptions, getToolTipText, li, modificationCount, processEv, processEvent, scrollToSelected, setData, setSelI, setSelII, setSelO, setSelOO, showInFrame, thread_setSelO, toString

Methods inherited from class javax.swing.JList

addListSelectionListener, addSelectionInterval, clearSelection, ensureIndexIsVisible, getAccessibleContext, getAnchorSelectionIndex, getCellBounds, getCellRenderer, getDragEnabled, getDropLocation, getDropMode, getFirstVisibleIndex, getFixedCellHeight, getFixedCellWidth, getLastVisibleIndex, getLayoutOrientation, getLeadSelectionIndex, getListSelectionListeners, getMaxSelectionIndex, getMinSelectionIndex, getModel, getNextMatch, getPreferredScrollableViewportSize, getPrototypeCellValue, getScrollableBlockIncrement, getScrollableTracksViewportHeight, getScrollableUnitIncrement, getSelectedIndex, getSelectedIndices, getSelectedValue, getSelectedValues, getSelectionBackground, getSelectionForeground, getSelectionMode, getSelectionModel, getUI, getUIClassID, getValueIsAdjusting, getVisibleRowCount, indexToLocation, isSelectedIndex, isSelectionEmpty, locationToIndex, removeListSelectionListener, removeSelectionInterval, setCellRenderer, setDragEnabled, setDropMode, setFixedCellHeight, setFixedCellWidth, setLayoutOrientation, setListData, setListData, setModel, setPrototypeCellValue, setSelectedIndex, setSelectedIndices, setSelectedValue, setSelectionBackground, setSelectionForeground, setSelectionInterval, setSelectionMode, setSelectionModel, setUI, setValueIsAdjusting, setVisibleRowCount, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintImmediately, paintImmediately, print, printAll, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, createImage, createImage, createVolatileImage, createVolatileImage, dispatchEvent, enable, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

NT

public static final long NT

See Also:

Constant Field Values

CALPHA

public static final long CALPHA

See Also:

Constant Field Values

PDB_ID

public static final long PDB_ID

See Also:

Constant Field Values

EC

public static final long EC

See Also:

Constant Field Values

IN_ALI

public static final long IN_ALI

See Also:

Constant Field Values

NOT_IN_ALI

public static final long NOT_IN_ALI

See Also:

Constant Field Values

ACTGN

public static final long ACTGN

See Also:

Constant Field Values

NT_or_ACTGN

public static final long NT_or_ACTGN

See Also:

Constant Field Values

NOT_ACTGN

public static final long NOT_ACTGN

See Also:

Constant Field Values

NO_CALPHA

public static final long NO_CALPHA

See Also:

Constant Field Values

IN_3D

public static final long IN_3D

See Also:

Constant Field Values

CHAINS

public static final long CHAINS

See Also:

Constant Field Values

SECSTRU

public static final long SECSTRU

See Also:

Constant Field Values

SOLVENT

public static final long SOLVENT

See Also:

Constant Field Values

RES_ANNO

public static final long RES_ANNO

See Also:

Constant Field Values

RES_SEL

public static final long RES_SEL

See Also:

Constant Field Values

SEQ_FEATURE

public static final long SEQ_FEATURE

See Also:

Constant Field Values

NONE

public static final long NONE

See Also:

Constant Field Values

HETERO3D

public static final long HETERO3D

See Also:

Constant Field Values

NUC3D

public static final long NUC3D

See Also:

Constant Field Values

INFERRED_3D

public static final long INFERRED_3D

See Also:

Constant Field Values

NO_3D_FILE

public static final long NO_3D_FILE

See Also:

Constant Field Values

NO_PDB_ID

public static final long NO_PDB_ID

See Also:

Constant Field Values

Constructor Detail

ProteinList

public ProteinList(long filter)

Method Detail

setFilter

public void setFilter(long filter)

paintComponent

public void paintComponent(java.awt.Graphics g)

Overrides:

paintComponent in class ChJList

paint

public void paint(java.awt.Graphics g)

Overrides:

paint in class ChJList

getSelectedProteins

public final Protein[] getSelectedProteins()

getSelectedOrAllProteins

public final Protein[] getSelectedOrAllProteins()

getSelectedProteinsAtLeast

public final Protein[] getSelectedProteinsAtLeast(int atLeast)

selectAll

public ProteinList selectAll(long filter)

getPreferredSize

public java.awt.Dimension getPreferredSize()

Overrides:

getPreferredSize in class ChJList

scrollPane

public javax.swing.JComponent scrollPane()

getScrollableTracksViewportWidth

public boolean getScrollableTracksViewportWidth()

Specified by:

getScrollableTracksViewportWidth in interface javax.swing.Scrollable

Overrides:

getScrollableTracksViewportWidth in class javax.swing.JList

isEnabled

public boolean isEnabled(java.lang.Object o)

Specified by:

isEnabled in interface IsEnabled

Overrides:

isEnabled in class ChJList

isEnabled

public static boolean isEnabled(Protein[] pp,
                                long flags)

isEnabled

public static boolean isEnabled(Protein p,
                                long flags)

onlyProteins

public static Protein[] onlyProteins(long flags,
                                     Protein[] pp)