A B C D E F G H I J L M N O P Q R S T U V W X Y Z

J

jButtonFtpPdbRetrieve - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher

jButtonFtpPdbRetrieveActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher

Starts PDB file retrieval.

jButtonPdbFileChoose - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher

jButtonPdbFileChooseActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher

Handles dialog window allowing to choose PDB file form a local filesystem.

jEllipse - Class in pl.krakow.cmuj.bioinformatics.jellipse

Main application class serving all grqphic data representations.

jEllipse() - Constructor for class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

Creates new form jEllipse

jEllipse.NotSoGreedyAnimator - Class in pl.krakow.cmuj.bioinformatics.jellipse

Prepared out of library sources Animator method that in its original version swamps the CPU not allowing e.g the JMenus to refresh and pop up.

jEllipse.NotSoGreedyAnimator(GLDrawable) - Constructor for class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse.NotSoGreedyAnimator

Creates a new NotSoGreedyAnimator for a particular drawable.

jEllipse.QuiteLazyAnimator - Class in pl.krakow.cmuj.bioinformatics.jellipse

Prepared out of library sources Animator method that in its original version swamps the CPU not allowing e.g the JMenus to refresh and pop up.

jEllipse.QuiteLazyAnimator(GLDrawable) - Constructor for class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse.QuiteLazyAnimator

Creates a new NotSoGreedyAnimator for a particular drawable.

jFileChooserSelectPdb - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher

jLabel1 - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.ChainChooser

jLabel1 - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher

jLabelAffiliations - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.About

jLabelAuthor - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.About

jLabelDate - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.About

jLabelFtpPdbId - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher

jLabelLogo - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.About

jLabelName - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.About

jLabelReferences - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.References

jLabelUsage - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.Quickinfo

jMenuAnotherAnalyse - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuAnotherAnalyseActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuBar - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuColorPB - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuColorPBActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuColors - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuColorsRG - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuColorsRGActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuFile - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuFilePlotExportAsPNG - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuFilePlotExportAsPNGActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuFileQuit - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuFileQuitActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuFileSeparator - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuFileSeparator0 - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuFileStructureExportAsPNG - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuFileStructureExportAsPNGActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHelp - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHelpAbout - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHelpAboutActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHelpQuickinfo - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHelpQuickinfoActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHelpReferences - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHelpReferencesActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHighlight - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHighlightAbsDeviation - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHighlightAbsDeviationActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHighlightAvgDA - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHighlightAvgDAActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHighlightDeviation - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHighlightDeviationActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHighlightLnR - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuHighlightLnRActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuPropertyName - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuPropertyNameActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuStructure - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuStructureBackboneComplete - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuStructureBackboneCompleteActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuStructureBackboneVirtual - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuStructureBackboneVirtualActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuView - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuViewFullscreen - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuViewFullscreenActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuViewRefresh - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jMenuViewRefreshActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jPanel1 - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.ChainChooser

jPanel2 - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.ChainChooser

jPanelGetPdbViaFtp - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher

jPanelGetPdbViaLocal - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher

jPanelLnRvsVPlot - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jPanelRamachandranMap - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse

jTextFieldAuthorContact - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.About

jTextFieldFtpPdbId - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher

jTextFieldFtpPdbIdActionPerformed(ActionEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher

jTextFieldFtpPdbIdKeyReleased(KeyEvent) - Method in class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher

Sets jTextFieldFtpPdbId's backgroung pink if PDB ID given is supposed to be incorrect (with length not equal to 4).

jTextFieldWebsite - Variable in class pl.krakow.cmuj.bioinformatics.jellipse.About