BioCocoa : To Do

To Do

Main.ToDo History

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August 12, 2006, at 12:07 PM by Koen -

Changed lines 8-9 from:

Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keys throughout the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta).

to:

Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keys throughout the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta). See also this discussion on the mailinglist.

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August 07, 2006, at 08:34 PM by Koen -

Changed line 2 from:

Prepare for new release (2.0)

to:

Prepare for new release

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August 01, 2006, at 09:00 PM by Koen - Re-organized todo list

Added lines 1-4:

Organization:

Prepare for new release (2.0)
Recruit new developers

Deleted lines 5-6:

Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
Update the test code to reflect the new BCSequence and NSData structure

Changed lines 7-8 from:

Work on nested and multi-lined annotations in some of the sequence formats

to:

Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively.

Changed lines 10-16 from:

Fix compiler warnings

Organization:

Work towards a new release (2.0)
Update docs about using Subversion instead of cvs
Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
Move more docs, etc to the wiki

to:

Update the test code to reflect the new BCSequence and NSData structure
Work on nested and multi-lined annotations in some of the sequence formats

Restore

August 01, 2006, at 09:12 AM by 65.205.158.138 -

Deleted line 3:

Fix translation code (check the Translation demo to see what's going wrong)

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April 18, 2006, at 02:25 PM by Koen -

Changed lines 3-16 from:

Code:
- Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
- Update the test code to reflect the new BCSequence/NSData structure
- Fix translation code (check the Translation demo to see what's going wrong)
- Implement a mutable sequence class
- Work on nested and multi-lined annotations in some of the sequence formats
- Extend use of BCFeature and BCAnnotation classes
- Fix compiler warnings
Organization:
- Update docs about using Subversion instead of cvs
- Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
- Work towards a new release
- Move more docs, etc to the wiki

to:

Code:

Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
Update the test code to reflect the new BCSequence/NSData structure
Fix translation code (check the Translation demo to see what's going wrong)
Implement a mutable sequence class
Work on nested and multi-lined annotations in some of the sequence formats
Extend use of BCFeature and BCAnnotation classes
Fix compiler warnings

Organization:

Update docs about using Subversion instead of cvs
Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
Work towards a new release
Move more docs, etc to the wiki

Restore

April 18, 2006, at 02:18 PM by Koen -

Changed lines 3-12 from:

Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
Convert the Test classes to use BCSequence instead of BCSequenceDNA, etc
Fix translation code
Fix compiler warnings
Implement a mutable sequence class
Update docs about using Subversion instead of SVN
Update HeaderDoc entries
Work on nested and multi-lined annotations in some of the sequence formats
Work towards a new release
Move more docs, etc to the wiki

to:

Code:
- Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
- Update the test code to reflect the new BCSequence/NSData structure
- Fix translation code (check the Translation demo to see what's going wrong)
- Implement a mutable sequence class
- Work on nested and multi-lined annotations in some of the sequence formats
- Extend use of BCFeature and BCAnnotation classes
- Fix compiler warnings
Organization:
- Update docs about using Subversion instead of cvs
- Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
- Work towards a new release
- Move more docs, etc to the wiki

Restore

April 11, 2006, at 09:00 PM by koen -

Changed line 7 from:

Update 'HeaderDoc entries

to:

Update HeaderDoc entries

Restore

April 10, 2006, at 01:27 PM by Koen -

Added lines 1-5:

This is a todo list for the BioCocoa project:

Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively.
Convert the Test classes to use BCSequence instead of BCSequenceDNA, etc.
Work towards a new release.

Restore