April 14, 2006, at 04:25 AM
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CRNPRED itself
to:
There are three things you need to have in order to use CRNPRED.
1. CRNPRED itself
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PSI-BLAST
to:
2. PSI-BLAST
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Amino acid sequence database
to:
3. Amino acid sequence database
April 14, 2006, at 04:24 AM
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CRNPRED itself
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PSI-BLAST
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Amino acid sequence database
April 11, 2006, at 09:30 PM
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UniRef100 . Download the fasta-formatted UniRef100 and apply formatdb (included in the BLAST suite) to make a BLAST-formatted database.
to:
UniRef100. Download the fasta-formatted UniRef100 and apply formatdb (included in the BLAST suite) to make a BLAST-formatted database.
April 11, 2006, at 09:28 PM
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Changed line 16 from:
UniRef100. Download the fasta-formatted UniRef100 and apply formatdb (included in the BLAST suite) to make a BLAST-formatted database.
to:
UniRef100 . Download the fasta-formatted UniRef100 and apply formatdb (included in the BLAST suite) to make a BLAST-formatted database.
April 11, 2006, at 09:27 PM
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Changed lines 13-16 from:
You need to install the blastpgp program included in the BLAST software suite, which is available at http://www.ncbi.nlm.nih.gov/Ftp.
You also need an amino acid sequence database, a big one. We strongly recommend using the most recent version of
UniRef100.
to:
You need to install the blastpgp program (PSI-BLAST) included in the BLAST software suite, which is available at http://www.ncbi.nlm.nih.gov/Ftp.
You also need an amino acid sequence database, a big one, to be used with PSI-BLAST. We strongly recommend using the most recent version of
UniRef100. Download the fasta-formatted UniRef100 and apply formatdb (included in the BLAST suite) to make a BLAST-formatted database.
April 11, 2006, at 09:05 PM
by 133.39.116.42 -
Changed lines 15-16 from:
You also need an amino acid sequence database, a big one. We strongly recommend using
UniRef100.
to:
You also need an amino acid sequence database, a big one. We strongly recommend using the most recent version of
UniRef100.
April 11, 2006, at 09:04 PM
by 133.39.116.42 -
Changed lines 11-16 from:
follow the instructions in the 00README file.
to:
follow the instructions in the 00README file.
You need to install the blastpgp program included in the BLAST software suite, which is available at http://www.ncbi.nlm.nih.gov/Ftp.
You also need an amino acid sequence database, a big one. We strongly recommend using
UniRef100.
April 11, 2006, at 08:53 PM
by 133.39.116.42 -
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First download the file crnpred.tar.gz [see File Releases in the above page] and expand it by doing something like:
to:
First download the file crnpred.tar.gz (found in File Releases in the above page) and expand it by doing something like:
April 11, 2006, at 08:53 PM
by 133.39.116.42 -
Changed line 5 from:
First download the file crnpred.tar.gz and expand it by doing something like:
to:
First download the file crnpred.tar.gz [see File Releases in the above page] and expand it by doing something like:
April 11, 2006, at 08:42 PM
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to:
follow the instructions in the 00README file.
April 11, 2006, at 03:59 AM
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- http://crnpred.genes.nig.ac.jp/crnpred/
April 11, 2006, at 02:00 AM
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Deleted line 2:
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to:
- http://bioinformatics.org/groups/?group_id=608
April 11, 2006, at 01:10 AM
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to:
First download the file crnpred.tar.gz and expand it by doing something like:
gunzip < crnpred.tar.gz | tar xvf -
Then change directory to crnpred and
read the 00README file.
April 11, 2006, at 01:01 AM
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April 11, 2006, at 01:00 AM
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Added line 1:
The source code of CRNPRED can be downloaded at the following pages: