[Biococoa-dev] Alignment & HMM Support in Biococoa

[Alexander Griekspoor]

Hooray, and as Phil will likely join the WWDC'05 as well, our BioCocoa 
meeting has just grown dramatically ;-)
That reminds me that I have to come up with a draft email to Robert 
Kehrer, I'll see if I can send you one soon Peter...
Cheers,
Alex


On 22-feb-05, at 19:54, Peter Schols wrote:

> Hi Alex and Phil,
>
> First of all, I'd like to welcome Phil officially to the BC team! I've 
> just added him as a group member.
>
> Secondly, I want to say that I would love to see a BioCocoa 
> implementation of alignment and HMM APIs! I was planning to use both 
> multiple alignment and HMM in an app I'm working on (for phylogenetic 
> footprinting) so I'd be very interested! Feel free to discuss any 
> implementation ideas you might have on the list.
>
> Best wishes,
>
> Peter
>
>
> On 22 Feb 2005, at 19:45, Alexander Griekspoor wrote:
>
>> Hi Phil,
>>
>> Absolutely fabulous, I've been begging for alignments in a decent 
>> framework for more than a year already, so it would be more than 
>> great from both a personal and a biococoa point of view I think. Of 
>> course this would require some work to make your project work 
>> natively (ideally speaking) with our BCSequence classes, but it would 
>> be awesome. If you haven't done so, please create an account at 
>> Bioinformatics.com and Peter can add you to the project member list, 
>> which allows you to access the CVS.
>> If you want I would like to invite you to describe your project in 
>> more detail on the list and we can discuss a bit more on how to 
>> implement your work in the framework... Looking forward to your 
>> contribution!
>> Cheers,
>> Alex
>>
>> On 22-feb-05, at 19:39, Philipp Seibel wrote:
>>
>>> Hi everybody,
>>>
>>> I'm currently working on a project focused on Hidden markov models & 
>>> sequence alignments.
>>> I would like to contribute my work to the framework. So i'd like to 
>>> add aligment & HMM structures to the framework.
>>>
>>> What do you think about it
>>>
>>> Bye,
>>>
>>> Phil
>>>
>>> _______________________________________________
>>> Biococoa-dev mailing list
>>> Biococoa-dev at bioinformatics.org
>>> https://bioinformatics.org/mailman/listinfo/biococoa-dev
>>>
>>>
>> *********************************************************
>>                     ** Alexander Griekspoor **
>> *********************************************************
>>               The Netherlands Cancer Institute
>>               Department of Tumorbiology (H4)
>>          Plesmanlaan 121, 1066 CX, Amsterdam
>>                   Tel:  + 31 20 - 512 2023
>>                   Fax:  + 31 20 - 512 2029
>>                   E-mail: a.griekspoor at nki.nl
>> 	        AIM: mekentosj at mac.com
>>               Web: http://www.mekentosj.com
>>
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>>
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>>
>
>
>
**************************************************************
                         ** Alexander Griekspoor **
**************************************************************
                  The Netherlands Cancer Institute
                  Department of Tumorbiology (H4)
             Plesmanlaan 121, 1066 CX, Amsterdam
                        Tel:  + 31 20 - 512 2023
                        Fax:  + 31 20 - 512 2029
                       AIM: mekentosj at mac.com
                       E-mail: a.griekspoor at nki.nl
                    Web: http://www.mekentosj.com

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