Basic Information | |||
Gene ID | 19401 ; Check Expression Profles ; Check TFs & Targets Binding | ||
Gene Name | Rara; Nr1b1 | ||
Full Name | Retinoic acid receptor alpha | ||
Organism | Mus musculus [10090] |
Cross Reference | |||
UniProt | P11416 | UniGene | Mm.439744 |
PDB | NULL | OMIM | NULL |
KEGG | mmu:19401 | UCSC | uc007lhz.2 |
Protein Interactions | |
DIP | DIP-31480N |
IntAct | P11416 |
MINT | MINT-5210296 |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
ENSEMBL | |||
ENSEMBL | |||
ENSEMBL | |||
ENSEMBL | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSMUSP00000129791 | Gene3D | G3DSA:1.10.565.10 | IPR008946 | 160 | 416 | 9.40e-95 | Nuclear hormone receptor, ligand-binding |
ENSMUSP00000129791 | Gene3D | G3DSA:3.30.50.10 | IPR013088 | 86 | 159 | 1.70e-33 | Zinc finger, NHR/GATA-type |
ENSMUSP00000129791 | Pfam | PF00104 | IPR000536 | 220 | 394 | 1.10e-30 | Nuclear hormone receptor, ligand-binding, core |
ENSMUSP00000129791 | Pfam | PF00105 | IPR001628 | 87 | 155 | 1.60e-32 | Zinc finger, nuclear hormone receptor-type |
ENSMUSP00000129791 | PRINTS | PR00047 | IPR001628 | 104 | 119 | 9.00e-19 | Zinc finger, nuclear hormone receptor-type |
ENSMUSP00000129791 | PRINTS | PR00047 | IPR001628 | 137 | 145 | 9.00e-19 | Zinc finger, nuclear hormone receptor-type |
ENSMUSP00000129791 | PRINTS | PR00047 | IPR001628 | 145 | 153 | 9.00e-19 | Zinc finger, nuclear hormone receptor-type |
ENSMUSP00000129791 | PRINTS | PR00047 | IPR001628 | 88 | 104 | 9.00e-19 | Zinc finger, nuclear hormone receptor-type |
ENSMUSP00000129791 | PRINTS | PR00398 | IPR001723 | 149 | 159 | 4.90e-34 | Steroid hormone receptor |
ENSMUSP00000129791 | PRINTS | PR00398 | IPR001723 | 231 | 252 | 4.90e-34 | Steroid hormone receptor |
ENSMUSP00000129791 | PRINTS | PR00398 | IPR001723 | 252 | 268 | 4.90e-34 | Steroid hormone receptor |
ENSMUSP00000129791 | PRINTS | PR00398 | IPR001723 | 319 | 334 | 4.90e-34 | Steroid hormone receptor |
ENSMUSP00000129791 | PRINTS | PR00398 | IPR001723 | 376 | 393 | 4.90e-34 | Steroid hormone receptor |
ENSMUSP00000129791 | PRINTS | PR01292 | IPR003078 | 154 | 167 | 4.40e-104 | Retinoic acid receptor |
ENSMUSP00000129791 | PRINTS | PR01292 | IPR003078 | 176 | 200 | 4.40e-104 | Retinoic acid receptor |
ENSMUSP00000129791 | PRINTS | PR01292 | IPR003078 | 201 | 217 | 4.40e-104 | Retinoic acid receptor |
ENSMUSP00000129791 | PRINTS | PR01292 | IPR003078 | 223 | 240 | 4.40e-104 | Retinoic acid receptor |
ENSMUSP00000129791 | PRINTS | PR01292 | IPR003078 | 274 | 298 | 4.40e-104 | Retinoic acid receptor |
ENSMUSP00000129791 | PRINTS | PR01292 | IPR003078 | 311 | 323 | 4.40e-104 | Retinoic acid receptor |
ENSMUSP00000129791 | PRINTS | PR01292 | IPR003078 | 341 | 362 | 4.40e-104 | Retinoic acid receptor |
ENSMUSP00000129791 | PRINTS | PR01292 | IPR003078 | 385 | 400 | 4.40e-104 | Retinoic acid receptor |
ENSMUSP00000129791 | PRINTS | PR01292 | IPR003078 | 408 | 421 | 4.40e-104 | Retinoic acid receptor |
ENSMUSP00000129791 | PRINTS | PR01292 | IPR003078 | 60 | 77 | 4.40e-104 | Retinoic acid receptor |
ENSMUSP00000129791 | ProSitePatterns | PS00031 | IPR001628 | 88 | 114 | - | Zinc finger, nuclear hormone receptor-type |
ENSMUSP00000129791 | ProSiteProfiles | PS51030 | IPR001628 | 85 | 160 | 0.00e-00 | Zinc finger, nuclear hormone receptor-type |
ENSMUSP00000129791 | SMART | SM00399 | IPR001628 | 85 | 156 | 2.40e-42 | Zinc finger, nuclear hormone receptor-type |
ENSMUSP00000129791 | SMART | SM00430 | IPR000536 | 230 | 388 | 4.00e-37 | Nuclear hormone receptor, ligand-binding, core |
ENSMUSP00000129791 | SUPERFAMILY | SSF48508 | IPR008946 | 137 | 164 | 0.00e-00 | Nuclear hormone receptor, ligand-binding |
ENSMUSP00000129791 | SUPERFAMILY | SSF48508 | IPR008946 | 196 | 415 | 0.00e-00 | Nuclear hormone receptor, ligand-binding |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSMUSP00000129791 | PF00105 | 1.6e-32 | zf-C4 | Zinc finger, C4 type (two domains) |
ENSMUSP00000129791 | PF00104 | 7.4e-31 | Hormone_recep | Ligand-binding domain of nuclear hormone receptor |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSMUSP00000129791 | GO:0048384 | biological_process | retinoic acid receptor signaling pathway |
ENSMUSP00000129791 | GO:0005634 | cellular_component | nucleus |
ENSMUSP00000129791 | GO:0003677 | molecular_function | DNA binding |
ENSMUSP00000129791 | GO:0003700 | molecular_function | sequence-specific DNA binding transcription factor activity |
ENSMUSP00000129791 | GO:0003707 | molecular_function | steroid hormone receptor activity |
ENSMUSP00000129791 | GO:0003708 | molecular_function | retinoic acid receptor activity |
ENSMUSP00000129791 | GO:0008270 | molecular_function | zinc ion binding |
ENSMUSP00000129791 | GO:0043565 | molecular_function | sequence-specific DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
9597 | Pan paniscus | 100967548 | 39432 | Saimiri boliviensis | 101036514 |
43179 | Ictidomys tridecemlineatus | 101974461 | 9986 | Oryctolagus cuniculus | 100009009 |
9555 | Papio anubis | 101019389 | 9685 | Felis catus | 101083048 |
9669 | Mustela putorius furo | 101682641 | 10116 | Rattus norvegicus | 24705 |
10020 | Dipodomys ordii | ENSDORG00000015185 | 9796 | Equus caballus | ENSECAG00000023358 |
13616 | Monodelphis domestica | ENSMODG00000013112 | 61853 | Nomascus leucogenys | ENSNLEG00000001793 |
9598 | Pan troglodytes | ENSPTRG00000009120 | 9305 | Sarcophilus harrisii | ENSSHAG00000012505 |
99883 | Tetraodon nigroviridis | ENSTNIG00000012850 | 10141 | Cavia porcellus | ENSCPOG00000007730 |
9371 | Echinops telfairi | ENSETEG00000013732 | 30611 | Otolemur garnettii | ENSOGAG00000024257 |
9601 | Pongo abelii | ENSPPYG00000008462 | 31033 | Takifugu rubripes | ENSTRUG00000016415 |
Paralogs | |||
19411 | 218772 |