Basic Information
Gene ID 445521
Gene Name HMGB1; HMG1
Full Name High mobility group protein B1
Organism Sus scrofa [9823]

Cross Reference
UniProt P12682 UniGene Ssc.22696
PDB NULL OMIM NULL
KEGG ssc:445521 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ
REFSEQ
REFSEQ
REFSEQ
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSSSCP00000009955 Gene3D G3DSA:1.10.30.10 IPR009071 8 78 9.50e-30 High mobility group box domain
ENSSSCP00000009955 Gene3D G3DSA:1.10.30.10 IPR009071 93 168 6.60e-32 High mobility group box domain
ENSSSCP00000009955 Pfam PF00505 IPR009071 95 163 3.80e-27 High mobility group box domain
ENSSSCP00000009955 Pfam PF09011 IPR009071 6 78 3.90e-27 High mobility group box domain
ENSSSCP00000009955 ProSitePatterns PS00353 IPR017967 41 52 - HMG box A DNA-binding domain, conserved site
ENSSSCP00000009955 ProSiteProfiles PS50118 IPR009071 95 163 0.00e-00 High mobility group box domain
ENSSSCP00000009955 ProSiteProfiles PS50118 IPR009071 9 79 0.00e-00 High mobility group box domain
ENSSSCP00000009955 SMART SM00398 IPR009071 8 80 2.80e-28 High mobility group box domain
ENSSSCP00000009955 SMART SM00398 IPR009071 94 164 1.30e-32 High mobility group box domain
ENSSSCP00000009955 SUPERFAMILY SSF47095 IPR009071 3 81 0.00e-00 High mobility group box domain
ENSSSCP00000009955 SUPERFAMILY SSF47095 IPR009071 78 164 0.00e-00 High mobility group box domain

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSSSCP00000009955 PF09011 1.90016e-42 HMG_box_2 HMG-box domain
ENSSSCP00000009955 PF00505 6.19934e-42 HMG_box HMG (high mobility group) box

Gene Ontology Annotation
Protein Entry Name Space Description
ENSSSCP00000009955 GO:0006288 biological_process base-excision repair, DNA ligation
ENSSSCP00000009955 GO:0017055 biological_process negative regulation of RNA polymerase II transcriptional preinitiation complex assembly
ENSSSCP00000009955 GO:0000793 cellular_component condensed chromosome
ENSSSCP00000009955 GO:0005634 cellular_component nucleus
ENSSSCP00000009955 GO:0005694 cellular_component chromosome
ENSSSCP00000009955 GO:0003677 molecular_function DNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
9796 Equus caballus 100033873 7425 Nasonia vitripennis 100122354
9555 Papio anubis 100137373 7029 Acyrthosiphon pisum 100167132
9483 Callithrix jacchus 100392312 400682 Amphimedon queenslandica 100635010
10141 Cavia porcellus 100718808 132113 Bombus impatiens 100749348
31033 Takifugu rubripes 101074166 13735 Pelodiscus sinensis 102454149
7227 Drosophila melanogaster 117294 10090 Mus musculus 15289
9606 Homo sapiens 3146 9601 Pongo abelii 100461759
9103 Meleagris gallopavo 100543659 7463 Apis florea 100871828
143995 Megachile rotundata 100876876 34638 Metaseiulus occidentalis 100900993
9597 Pan paniscus 100971286 39432 Saimiri boliviensis 101045330
43179 Ictidomys tridecemlineatus 101976825 8083 Xiphophorus maculatus 102238067
7897 Latimeria chalumnae 102366474 59463 Myotis lucifugus 102420405
9913 Bos taurus 282691 7668 Strongylocentrotus purpuratus 373332
8364 Xenopus tropicalis 394834 7070 Tribolium castaneum 662763
9544 Macaca mulatta 712849 7460 Apis mellifera 725551
9598 Pan troglodytes 736904 7719 Ciona intestinalis 778643
28377 Anolis carolinensis ENSACAG00000005092 9646 Ailuropoda melanoleuca ENSAMEG00000011652
9615 Canis familiaris ENSCAFG00000023930 9358 Choloepus hoffmanni ENSCHOG00000002423
7955 Danio rerio ENSDARG00000029722 9371 Echinops telfairi ENSETEG00000004048
9685 Felis catus ENSFCAG00000000200 69293 Gasterosteus aculeatus ENSGACG00000020545
9595 Gorilla gorilla ENSGGOG00000025109 8049 Gadus morhua ENSGMOG00000019231
13616 Monodelphis domestica ENSMODG00000009238 9258 Ornithorhynchus anatinus ENSOANG00000014719
8128 Oreochromis niloticus ENSONIG00000006737 9978 Ochotona princeps ENSOPRG00000003507
8090 Oryzias latipes ENSORLG00000003951 9813 Procavia capensis ENSPCAG00000002201
7757 Petromyzon marinus ENSPMAG00000008313 132908 Pteropus vampyrus ENSPVAG00000001431
42254 Sorex araneus ENSSARG00000004470 9305 Sarcophilus harrisii ENSSHAG00000014034
37347 Tupaia belangeri ENSTBEG00000012820 9478 Tarsius syrichta ENSTSYG00000006328
9739 Tursiops truncatus ENSTTRG00000010327 30538 Vicugna pacos ENSVPAG00000004452
51511 Ciona savignyi ENSCSAVG00000000341 9361 Dasypus novemcinctus ENSDNOG00000005537
9365 Erinaceus europaeus ENSEEUG00000012238 9031 Gallus gallus ENSGALG00000010745
9315 Macropus eugenii ENSMEUG00000001380 30608 Microcebus murinus ENSMICG00000007144
9986 Oryctolagus cuniculus ENSOCUG00000021335 30611 Otolemur garnettii ENSOGAG00000003205
10116 Rattus norvegicus ENSRNOG00000030351 99883 Tetraodon nigroviridis ENSTNIG00000016258

Paralogs
100517745 ENSSSCG00000022459 ENSSSCG00000009704