Basic Information | |||
Gene ID | 445521 | ||
Gene Name | HMGB1; HMG1 | ||
Full Name | High mobility group protein B1 | ||
Organism | Sus scrofa [9823] |
Cross Reference | |||
UniProt | P12682 | UniGene | Ssc.22696 |
PDB | NULL | OMIM | NULL |
KEGG | ssc:445521 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSSSCP00000009955 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 8 | 78 | 9.50e-30 | High mobility group box domain |
ENSSSCP00000009955 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 93 | 168 | 6.60e-32 | High mobility group box domain |
ENSSSCP00000009955 | Pfam | PF00505 | IPR009071 | 95 | 163 | 3.80e-27 | High mobility group box domain |
ENSSSCP00000009955 | Pfam | PF09011 | IPR009071 | 6 | 78 | 3.90e-27 | High mobility group box domain |
ENSSSCP00000009955 | ProSitePatterns | PS00353 | IPR017967 | 41 | 52 | - | HMG box A DNA-binding domain, conserved site |
ENSSSCP00000009955 | ProSiteProfiles | PS50118 | IPR009071 | 95 | 163 | 0.00e-00 | High mobility group box domain |
ENSSSCP00000009955 | ProSiteProfiles | PS50118 | IPR009071 | 9 | 79 | 0.00e-00 | High mobility group box domain |
ENSSSCP00000009955 | SMART | SM00398 | IPR009071 | 8 | 80 | 2.80e-28 | High mobility group box domain |
ENSSSCP00000009955 | SMART | SM00398 | IPR009071 | 94 | 164 | 1.30e-32 | High mobility group box domain |
ENSSSCP00000009955 | SUPERFAMILY | SSF47095 | IPR009071 | 3 | 81 | 0.00e-00 | High mobility group box domain |
ENSSSCP00000009955 | SUPERFAMILY | SSF47095 | IPR009071 | 78 | 164 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSSSCP00000009955 | PF09011 | 1.90016e-42 | HMG_box_2 | HMG-box domain |
ENSSSCP00000009955 | PF00505 | 6.19934e-42 | HMG_box | HMG (high mobility group) box |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSSSCP00000009955 | GO:0006288 | biological_process | base-excision repair, DNA ligation |
ENSSSCP00000009955 | GO:0017055 | biological_process | negative regulation of RNA polymerase II transcriptional preinitiation complex assembly |
ENSSSCP00000009955 | GO:0000793 | cellular_component | condensed chromosome |
ENSSSCP00000009955 | GO:0005634 | cellular_component | nucleus |
ENSSSCP00000009955 | GO:0005694 | cellular_component | chromosome |
ENSSSCP00000009955 | GO:0003677 | molecular_function | DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
9796 | Equus caballus | 100033873 | 7425 | Nasonia vitripennis | 100122354 |
9555 | Papio anubis | 100137373 | 7029 | Acyrthosiphon pisum | 100167132 |
9483 | Callithrix jacchus | 100392312 | 400682 | Amphimedon queenslandica | 100635010 |
10141 | Cavia porcellus | 100718808 | 132113 | Bombus impatiens | 100749348 |
31033 | Takifugu rubripes | 101074166 | 13735 | Pelodiscus sinensis | 102454149 |
7227 | Drosophila melanogaster | 117294 | 10090 | Mus musculus | 15289 |
9606 | Homo sapiens | 3146 | 9601 | Pongo abelii | 100461759 |
9103 | Meleagris gallopavo | 100543659 | 7463 | Apis florea | 100871828 |
143995 | Megachile rotundata | 100876876 | 34638 | Metaseiulus occidentalis | 100900993 |
9597 | Pan paniscus | 100971286 | 39432 | Saimiri boliviensis | 101045330 |
43179 | Ictidomys tridecemlineatus | 101976825 | 8083 | Xiphophorus maculatus | 102238067 |
7897 | Latimeria chalumnae | 102366474 | 59463 | Myotis lucifugus | 102420405 |
9913 | Bos taurus | 282691 | 7668 | Strongylocentrotus purpuratus | 373332 |
8364 | Xenopus tropicalis | 394834 | 7070 | Tribolium castaneum | 662763 |
9544 | Macaca mulatta | 712849 | 7460 | Apis mellifera | 725551 |
9598 | Pan troglodytes | 736904 | 7719 | Ciona intestinalis | 778643 |
28377 | Anolis carolinensis | ENSACAG00000005092 | 9646 | Ailuropoda melanoleuca | ENSAMEG00000011652 |
9615 | Canis familiaris | ENSCAFG00000023930 | 9358 | Choloepus hoffmanni | ENSCHOG00000002423 |
7955 | Danio rerio | ENSDARG00000029722 | 9371 | Echinops telfairi | ENSETEG00000004048 |
9685 | Felis catus | ENSFCAG00000000200 | 69293 | Gasterosteus aculeatus | ENSGACG00000020545 |
9595 | Gorilla gorilla | ENSGGOG00000025109 | 8049 | Gadus morhua | ENSGMOG00000019231 |
13616 | Monodelphis domestica | ENSMODG00000009238 | 9258 | Ornithorhynchus anatinus | ENSOANG00000014719 |
8128 | Oreochromis niloticus | ENSONIG00000006737 | 9978 | Ochotona princeps | ENSOPRG00000003507 |
8090 | Oryzias latipes | ENSORLG00000003951 | 9813 | Procavia capensis | ENSPCAG00000002201 |
7757 | Petromyzon marinus | ENSPMAG00000008313 | 132908 | Pteropus vampyrus | ENSPVAG00000001431 |
42254 | Sorex araneus | ENSSARG00000004470 | 9305 | Sarcophilus harrisii | ENSSHAG00000014034 |
37347 | Tupaia belangeri | ENSTBEG00000012820 | 9478 | Tarsius syrichta | ENSTSYG00000006328 |
9739 | Tursiops truncatus | ENSTTRG00000010327 | 30538 | Vicugna pacos | ENSVPAG00000004452 |
51511 | Ciona savignyi | ENSCSAVG00000000341 | 9361 | Dasypus novemcinctus | ENSDNOG00000005537 |
9365 | Erinaceus europaeus | ENSEEUG00000012238 | 9031 | Gallus gallus | ENSGALG00000010745 |
9315 | Macropus eugenii | ENSMEUG00000001380 | 30608 | Microcebus murinus | ENSMICG00000007144 |
9986 | Oryctolagus cuniculus | ENSOCUG00000021335 | 30611 | Otolemur garnettii | ENSOGAG00000003205 |
10116 | Rattus norvegicus | ENSRNOG00000030351 | 99883 | Tetraodon nigroviridis | ENSTNIG00000016258 |
Paralogs | |||
100517745 | ENSSSCG00000022459 | ENSSSCG00000009704 |