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Main.HomePage History
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August 13, 2015, at 12:16 PM
by 73.142.174.226 -
Changed lines 11-14 from:
* download the [[http://www.bioinformatics.org/websvn/dl.php?repname=strainer&path=%2Ftrunk%2F&rev=0&isdir=1 | svn tarball]]
You can also download the latest [[http://www.bioinformatics.org/download.php/strainer/Strainer-0.9.4b-src.jar | released version ]].
to:
You can also download the latest [[http://www.bioinformatics.org/downloads/index.php/strainer/Strainer-0.9.4b-src.jar | released version ]].
Changed lines 16-18 from:
* [[http://www.bioinformatics.org/download.php/strainer/Strainer-0.9.4b.jar | compiled code packaged with documentation]]
* [[http://www.bioinformatics.org/download.php/strainer/strainer-r23.jar | executable jar file ]]
to:
* [[http://www.bioinformatics.org/downloads/index.php/strainer/Strainer-0.9.4b.jar | compiled code packaged with documentation]]
* [[http://www.bioinformatics.org/downloads/index.php/strainer/strainer-r23.jar | executable jar file ]]
Changed lines 21-25 from:
This will eventually be migrated to the wiki. For now available from the SVN repository in two formats:
* [[http://www.bioinformatics.org/websvn/filedetails.php?repname=strainer&path=%2Ftrunk%2FManual.doc | MS Word]]
* [[http://www.bioinformatics.org/websvn/filedetails.php?repname=strainer&path=%2Ftrunk%2FManual.pdf | Adobe PDF]]
to:
Documentation is available in the source and compiled jar files. Unpack with `jar -xvf FILE_NAME`
!!! Moving
Future work on Strainer will appear on [[https://github.com/jmeppley/strainer | GitHub]] April 06, 2010, at 02:13 PM
by John - Removig references to old site
Deleted lines 4-5:
Bioinformatics.org is the new home for Strainer. Most everything is here now, but there is some sample data on the [[ http://www.ocf.berkeley.edu/~jmeppley/strainer | old Strainer page ]]
Changed lines 22-23 from:
This will eventually be migrated to the wiki. For now available from the original site two formats:
to:
This will eventually be migrated to the wiki. For now available from the SVN repository in two formats:
April 06, 2010, at 02:10 PM
by John - Fixing links to documentation and SVN
Changed lines 12-14 from:
* browse the source on the web: [[http://bioinformatics.org/websvn/listing.php?repname=strainer&path=%2F&sc=0 | WebSVN]]
* download the [[http://bioinformatics.org/websvn/dl.php?repname=strainer&path=%2F&rev=0&isdir=1 | svn tarball]]
to:
* browse the source on the web: [[http://www.bioinformatics.org/websvn/listing.php?repname=strainer&path=%2Ftrunk%2F#_trunk_ | WebSVN]]
* download the [[http://www.bioinformatics.org/websvn/dl.php?repname=strainer&path=%2Ftrunk%2F&rev=0&isdir=1 | svn tarball]]
Changed lines 26-28 from:
* [[http://www.ocf.berkeley.edu/~jmeppley/strainer/files/Manual.doc | MS Word]]
* [[http://www.ocf.berkeley.edu/~jmeppley/strainer/files/Manual.pdf | Adobe PDF]]
to:
* [[http://www.bioinformatics.org/websvn/filedetails.php?repname=strainer&path=%2Ftrunk%2FManual.doc | MS Word]]
* [[http://www.bioinformatics.org/websvn/filedetails.php?repname=strainer&path=%2Ftrunk%2FManual.pdf | Adobe PDF]]
March 05, 2010, at 10:33 AM
by John Eppley - updated versions
Changed lines 15-16 from:
You can also download the latest [[http://www.bioinformatics.org/download.php/strainer/Strainer-0.9.3b-src.jar | released version ]].
to:
You can also download the latest [[http://www.bioinformatics.org/download.php/strainer/Strainer-0.9.4b-src.jar | released version ]].
Changed lines 19-21 from:
* [[http://www.bioinformatics.org/download.php/strainer/Strainer-0.9.3b.jar | compiled code packaged with documentation]]
* [[http://www.bioinformatics.org/download.php/strainer/strainer-r19.jar | executable jar file ]]
to:
* [[http://www.bioinformatics.org/download.php/strainer/Strainer-0.9.4b.jar | compiled code packaged with documentation]]
* [[http://www.bioinformatics.org/download.php/strainer/strainer-r23.jar | executable jar file ]]
September 10, 2008, at 09:20 PM
by jmeppley -
Changed lines 15-16 from:
You can also download the last [[http://www.bioinformatics.org/download.php/strainer/Strainer-0.9.3b-src.jar | released version ]] from the original site.
to:
You can also download the latest [[http://www.bioinformatics.org/download.php/strainer/Strainer-0.9.3b-src.jar | released version ]].
September 10, 2008, at 09:19 PM
by jmeppley - fix broken link
Changed line 12 from:
* browse the source on the web: http://bioinformatics.org/websvn/listing.php?repname=strainer&path=%2F&sc=0 | WebSVN]] to:
* browse the source on the web: [[http://bioinformatics.org/websvn/listing.php?repname=strainer&path=%2F&sc=0 | WebSVN]] September 10, 2008, at 03:47 PM
by jmeppley - new release
Changed lines 5-6 from:
Bioinformatics.org is the new home for Strainer. Until the move is complete, most files will continue to be hosted on the [[ http://www.ocf.berkeley.edu/~jmeppley/strainer | old Strainer page ]]
to:
Bioinformatics.org is the new home for Strainer. Most everything is here now, but there is some sample data on the [[ http://www.ocf.berkeley.edu/~jmeppley/strainer | old Strainer page ]]
Changed lines 9-10 from:
Source code has been uploaded and can be obtained from the bioinformatics.org subversion (svn) server. There are three ways to get the source:
to:
Source code has been uploaded and can be obtained from the bioinformatics.org subversion (svn) server. There are three ways to get the current source:
Changed lines 15-16 from:
You can also download the last [[http://www.ocf.berkeley.edu/~jmeppley/strainer/files/Strainer-0.9.1b-src.jar | "released" version ]] from the original site.
to:
You can also download the last [[http://www.bioinformatics.org/download.php/strainer/Strainer-0.9.3b-src.jar | released version ]] from the original site.
Changed lines 19-23 from:
Until this site is truly up and running, you can download compiled versions from the original site:
* [[http://www.ocf.berkeley.edu/~jmeppley/strainer/files/Strainer-0.9.1b.jar | compiled code packaged with documentation]]
* [[http://www.ocf.berkeley.edu/~jmeppley/strainer/files/strainer.jar | executable jar file ]]
to:
* [[http://www.bioinformatics.org/download.php/strainer/Strainer-0.9.3b.jar | compiled code packaged with documentation]]
* [[http://www.bioinformatics.org/download.php/strainer/strainer-r19.jar | executable jar file ]]
October 11, 2007, at 10:29 PM
by john - fixing link
Changed lines 15-16 from:
You can also download the last "released" version from the original site http://www.ocf.berkeley.edu/~jmeppley/strainer/files/Strainer-0.9.1b-src.jar | link ]])
to:
You can also download the last [[http://www.ocf.berkeley.edu/~jmeppley/strainer/files/Strainer-0.9.1b-src.jar | "released" version ]] from the original site.
September 05, 2007, at 04:29 PM
by jmeppley - first page
Added lines 1-30:
!! Strainer
Strainer is a multi-platform visualization tool for metagenomics data. It allows the user to easily browse the variation present in shotgun sequence data from non-clonal samples.
Bioinformatics.org is the new home for Strainer. Until the move is complete, most files will continue to be hosted on the [[ http://www.ocf.berkeley.edu/~jmeppley/strainer | old Strainer page ]]
!!! Source code
Source code has been uploaded and can be obtained from the bioinformatics.org subversion (svn) server. There are three ways to get the source:
* checkout using an svn client ([[http://bioinformatics.org/docs/svn/ | instructions ]])
* browse the source on the web: http://bioinformatics.org/websvn/listing.php?repname=strainer&path=%2F&sc=0 | WebSVN]]
* download the [[http://bioinformatics.org/websvn/dl.php?repname=strainer&path=%2F&rev=0&isdir=1 | svn tarball]]
You can also download the last "released" version from the original site http://www.ocf.berkeley.edu/~jmeppley/strainer/files/Strainer-0.9.1b-src.jar | link ]])
!!! Compiled code
Until this site is truly up and running, you can download compiled versions from the original site:
* [[http://www.ocf.berkeley.edu/~jmeppley/strainer/files/Strainer-0.9.1b.jar | compiled code packaged with documentation]]
* [[http://www.ocf.berkeley.edu/~jmeppley/strainer/files/strainer.jar | executable jar file ]]
!!! Documentation
This will eventually be migrated to the wiki. For now available from the original site two formats:
* [[http://www.ocf.berkeley.edu/~jmeppley/strainer/files/Manual.doc | MS Word]]
* [[http://www.ocf.berkeley.edu/~jmeppley/strainer/files/Manual.pdf | Adobe PDF]]
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