Databases

From Bioinformatics.Org Wiki

Contents 1 Subtopics 2 Databases 3 Software 4 See also

Subtopics

• Data mining
• Database interface
• Database searching
• Database segmentation

Databases

• GenBank - NCBI nucleic acid and protein sequence database
• Acedb - a genome database system originally developed for the C.elegans genome project
• ERGO - an extensive microbial genome database including access to gene annotations, protein sequences, and networked metabolic/non-metabolic pathways
• PDB - a database of protein and other molecule structures
• PubMed - a database of published research abstracts

Software

• ARB - microbiologist's sequence database tool
• Friend - an Integrated Front-end Application for Bioinformatics
• HMMER - Profile Hidden Markov Models for biological sequence analysis
• ModView - a program to visualize and analyze multiple biomolecule structures and/or sequence alignments
• mpiBLAST - a parallel implementation of NCBI-BLAST that uses database segmentation

See also

• Format converters
• MySQL