CMView is an intervative contact map visualization and analysis tool. The current version is 1.1.
Main features:
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Combined contact map and 3D structure view (using PyMol)
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Various im- and export options: PDB files, Online PDB, Image export, CASP prediction format and others
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Calculation of contact maps with user-defined contact definitions
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Integration with PyMol for feature-rich 3D molecular visualization
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Structure and contact map comparison using built-in sequence or structural alignments
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Distance map, difference map, contact density analysis
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Available for Unix, Windows, MacOS and other platforms supporting Java
Example uses:
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Assessing similarites and differences between structure- or contact predictions
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Studying interaction patterns between secondary structure elements
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Visualization of conformational changes in 3D and contact map space
Contacting us:
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Email the developers mailing list cmview-devel@bioinformatics.org or simply sing up to the list here