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PyMsXML: Translate MS data to XML - Summary

All categories :: bioinformatics software development :: PyMsXML: Translate MS data to XML

PyMsXML is a python script for converting vendor specific mass spectrometry data files from their proprietary binary format, to either of the emerging XML file formats for mass spectra: mzXML or mzData.


License: GNU General Public License



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Project admins: Nathan Edwards

Members: 1 [View all members]
Downloads
Module name: Scripts Only
Latest release is 0.5.4
View: [Release Notes & Changelog]
Download: [zip]
Module name: Complete
Latest release is 0.5.4
View: [Release Notes & Changelog]
Download: [zip]

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PyMsXML 0.5.0 Released!
Submitted by Nathan Edwards; posted on Wednesday, November 08, 2006
Major update to PyMsXML released.

Highlights:

* Output to mzXML version 2.1, 2.2, or 3.0.
* Compression of entire output file (gzip) or mzXML 3.0 peaks (zlib).
* Peak detection of MS and/or MS/MS spectra using vendor libraries.
* Filter scans to select only the ones you want.
* Better support for multiple acquisitions (samples) in single QStar wiff file.
* Reads mzXML file as input.

Download from bioinformatics.org.

nathan

--
Nathan Edwards, Ph.D.
Center for Bioinformatics and Computational Biology
3119 Biomolecular Sciences Bldg. #296
University of Maryland, College Park, MD 20742
Phone: +1 301-405-9901
Email: nedwards[at]umiacs.umd.edu
WWWeb: http://www.umiacs.umd.edu/~nedwards
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