Basic Information | |||
Gene ID | 288906 ; Check Expression Profles ; Check TFs & Targets Binding | ||
Gene Name | Rfx1; Rfx1_predicted; rCG_51209 | ||
Full Name | Protein Rfx1 | ||
Organism | Rattus norvegicus [10116] |
Cross Reference | |||
UniProt | D3ZQ82 | UniGene | Rn.154447 |
PDB | NULL | OMIM | NULL |
KEGG | rno:288906 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSRNOP00000008104 | Gene3D | G3DSA:1.10.10.10 | IPR011991 | 424 | 498 | 1.70e-40 | Winged helix-turn-helix DNA-binding domain |
ENSRNOP00000008104 | Pfam | PF02257 | IPR003150 | 421 | 500 | 1.40e-36 | DNA-binding RFX-type winged-helix domain |
ENSRNOP00000008104 | Pfam | PF04589 | IPR007668 | 209 | 367 | 1.60e-52 | RFX1 transcription activation region |
ENSRNOP00000008104 | ProSiteProfiles | PS51526 | IPR003150 | 424 | 499 | 0.00e-00 | DNA-binding RFX-type winged-helix domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSRNOP00000008104 | PF04589 | 0 | RFX1_trans_act | RFX1 transcription activation region |
ENSRNOP00000008104 | PF02257 | 4.9e-37 | RFX_DNA_binding | RFX DNA-binding domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSRNOP00000008104 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
ENSRNOP00000008104 | GO:0005634 | cellular_component | nucleus |
ENSRNOP00000008104 | GO:0003677 | molecular_function | DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
39432 | Saimiri boliviensis | 101037994 | 9986 | Oryctolagus cuniculus | 100009410 |
7425 | Nasonia vitripennis | 100121130 | 7029 | Acyrthosiphon pisum | 100159044 |
6087 | Hydra magnipapillata | 100203968 | 10224 | Saccoglossus kowalevskii | 100372282 |
9823 | Sus scrofa | 100511439 | 400682 | Amphimedon queenslandica | 100638336 |
30195 | Bombus terrestris | 100642228 | 132113 | Bombus impatiens | 100749382 |
10029 | Cricetulus griseus | 100767562 | 7463 | Apis florea | 100864431 |
143995 | Megachile rotundata | 100876007 | 34638 | Metaseiulus occidentalis | 100908403 |
9597 | Pan paniscus | 100993917 | 9555 | Papio anubis | 101017476 |
9595 | Gorilla gorilla | 101129297 | 10090 | Mus musculus | 19724 |
9615 | Canis familiaris | 484908 | 7668 | Strongylocentrotus purpuratus | 586051 |
9606 | Homo sapiens | 5991 | 7070 | Tribolium castaneum | 664071 |
28377 | Anolis carolinensis | ENSACAG00000015671 | 9646 | Ailuropoda melanoleuca | ENSAMEG00000013075 |
9913 | Bos taurus | ENSBTAG00000008854 | 9358 | Choloepus hoffmanni | ENSCHOG00000008113 |
7719 | Ciona intestinalis | ENSCING00000009186 | 9483 | Callithrix jacchus | ENSCJAG00000004970 |
10141 | Cavia porcellus | ENSCPOG00000010089 | 51511 | Ciona savignyi | ENSCSAVG00000006455 |
10020 | Dipodomys ordii | ENSDORG00000016506 | 9796 | Equus caballus | ENSECAG00000016589 |
9365 | Erinaceus europaeus | ENSEEUG00000013595 | 9371 | Echinops telfairi | ENSETEG00000003677 |
69293 | Gasterosteus aculeatus | ENSGACG00000012429 | 8049 | Gadus morhua | ENSGMOG00000008963 |
7897 | Latimeria chalumnae | ENSLACG00000022433 | 9785 | Loxodonta africana | ENSLAFG00000010160 |
9315 | Macropus eugenii | ENSMEUG00000009014 | 9103 | Meleagris gallopavo | ENSMGAG00000001572 |
30608 | Microcebus murinus | ENSMICG00000012036 | 59463 | Myotis lucifugus | ENSMLUG00000013002 |
9544 | Macaca mulatta | ENSMMUG00000018966 | 61853 | Nomascus leucogenys | ENSNLEG00000015842 |
9258 | Ornithorhynchus anatinus | ENSOANG00000014996 | 30611 | Otolemur garnettii | ENSOGAG00000007762 |
8128 | Oreochromis niloticus | ENSONIG00000002158 | 9978 | Ochotona princeps | ENSOPRG00000003641 |
8090 | Oryzias latipes | ENSORLG00000010273 | 7757 | Petromyzon marinus | ENSPMAG00000002263 |
9601 | Pongo abelii | ENSPPYG00000009631 | 13735 | Pelodiscus sinensis | ENSPSIG00000016113 |
9598 | Pan troglodytes | ENSPTRG00000010352 | 132908 | Pteropus vampyrus | ENSPVAG00000017549 |
42254 | Sorex araneus | ENSSARG00000013845 | 43179 | Ictidomys tridecemlineatus | ENSSTOG00000025432 |
37347 | Tupaia belangeri | ENSTBEG00000014646 | 59729 | Taeniopygia guttata | ENSTGUG00000000369 |
99883 | Tetraodon nigroviridis | ENSTNIG00000003294 | 31033 | Takifugu rubripes | ENSTRUG00000012387 |
9478 | Tarsius syrichta | ENSTSYG00000006974 | 9739 | Tursiops truncatus | ENSTTRG00000008377 |
30538 | Vicugna pacos | ENSVPAG00000005472 | 8364 | Xenopus tropicalis | ENSXETG00000005567 |
8083 | Xiphophorus maculatus | ENSXMAG00000014267 | 7955 | Danio rerio | ENSDARG00000005883 |
9685 | Felis catus | ENSFCAG00000003721 | 13616 | Monodelphis domestica | ENSMODG00000012044 |
9669 | Mustela putorius furo | ENSMPUG00000003132 | 9813 | Procavia capensis | ENSPCAG00000010006 |
9305 | Sarcophilus harrisii | ENSSHAG00000009998 |