Basic Information | |||
Gene ID | 336346 | ||
Gene Name | sox4a; sox4 | ||
Full Name | SRY-box containing gene 4a | ||
Organism | Danio rerio [7955] |
Cross Reference | |||
UniProt | Q6P0Z4 | UniGene | Dr.76585 |
PDB | NULL | OMIM | NULL |
KEGG | dre:336346 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | 7955.ENSDARP00000002932 |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSDARP00000002932 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 63 | 141 | 2.40e-34 | High mobility group box domain |
ENSDARP00000002932 | Pfam | PF00505 | IPR009071 | 64 | 132 | 1.30e-25 | High mobility group box domain |
ENSDARP00000002932 | PIRSF | PIRSF038098 | IPR017386 | 7 | 363 | 5.00e-210 | Transcription factor SOX-12/11/4a |
ENSDARP00000002932 | ProSiteProfiles | PS50118 | IPR009071 | 64 | 132 | 0.00e-00 | High mobility group box domain |
ENSDARP00000002932 | SMART | SM00398 | IPR009071 | 63 | 133 | 5.00e-31 | High mobility group box domain |
ENSDARP00000002932 | SUPERFAMILY | SSF47095 | IPR009071 | 55 | 136 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSDARP00000002932 | PF00505 | 7.1e-26 | HMG_box | HMG (high mobility group) box |
ENSDARP00000002932 | PF09011 | 8.1e-09 | HMG_box_2 | HMG-box domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSDARP00000002932 | GO:0006351 | biological_process | transcription, DNA-templated |
ENSDARP00000002932 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
ENSDARP00000002932 | GO:0005634 | cellular_component | nucleus |
ENSDARP00000002932 | GO:0003677 | molecular_function | DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
9555 | Papio anubis | 101025822 | 7897 | Latimeria chalumnae | 102348377 |
10224 | Saccoglossus kowalevskii | 100303598 | 9823 | Sus scrofa | 100512542 |
8128 | Oreochromis niloticus | 100692790 | 9597 | Pan paniscus | 100986358 |
8083 | Xiphophorus maculatus | 102221674 | 9598 | Pan troglodytes | 471866 |
7668 | Strongylocentrotus purpuratus | 593520 | 9606 | Homo sapiens | 6659 |
9646 | Ailuropoda melanoleuca | ENSAMEG00000011155 | 10141 | Cavia porcellus | ENSCPOG00000019926 |
9365 | Erinaceus europaeus | ENSEEUG00000003666 | 69293 | Gasterosteus aculeatus | ENSGACG00000009053 |
9595 | Gorilla gorilla | ENSGGOG00000012319 | 8049 | Gadus morhua | ENSGMOG00000001228 |
9785 | Loxodonta africana | ENSLAFG00000018401 | 9315 | Macropus eugenii | ENSMEUG00000016448 |
13616 | Monodelphis domestica | ENSMODG00000011338 | 9669 | Mustela putorius furo | ENSMPUG00000004933 |
61853 | Nomascus leucogenys | ENSNLEG00000001795 | 7757 | Petromyzon marinus | ENSPMAG00000010355 |
9601 | Pongo abelii | ENSPPYG00000016272 | 9305 | Sarcophilus harrisii | ENSSHAG00000011043 |
31033 | Takifugu rubripes | ENSTRUG00000011266 | 9544 | Macaca mulatta | 706531 |
9615 | Canis familiaris | ENSCAFG00000024883 | 9358 | Choloepus hoffmanni | ENSCHOG00000002300 |
9796 | Equus caballus | ENSECAG00000013507 | 8090 | Oryzias latipes | ENSORLG00000005001 |
99883 | Tetraodon nigroviridis | ENSTNIG00000009265 |
Paralogs | |||
562381 |