>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.034 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEANARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 45.8 bits (108), Expect = 1e-07 Identities = 40/217 (18%), Positives = 74/217 (34%) Query: 13 QVRKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKT 72 + +LE + G + + A+ + L + L L + + + + Sbjct: 120 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIK 179 Query: 73 ELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTK 132 L + L + L+ L + A + LE EK L + DL K E Sbjct: 180 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239 Query: 133 ANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKK 192 +T + L + AL Q L++ + LE + L + Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299 Query: 193 LESAQKNLENSNDQLLQAIENIAEEKTELEREIARLK 229 LE + L + L + ++ E K +LE E +L+ Sbjct: 300 LEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLE 336 Score = 45.1 bits (106), Expect = 2e-07 Identities = 48/262 (18%), Positives = 86/262 (32%), Gaps = 11/262 (4%) Query: 16 KELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTELT 75 EL +S +++ + + A EL+ L + + + + L Sbjct: 88 DELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLE 147 Query: 76 EKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANT 135 + L K +L+ L + A + LE EK L + +L K E +T Sbjct: 148 AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFST 207 Query: 136 ELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLES 195 + L + AL + L++ + LE + L + +LE Sbjct: 208 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 267 Query: 196 AQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIEDLKR 255 A + N + I+ + EK LE E A L+ + + L+R Sbjct: 268 ALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR-----------QSLRR 316 Query: 256 QNRKLEEENIALKERAYGLKEQ 277 E L+ L+EQ Sbjct: 317 DLDASREAKKQLEAEHQKLEEQ 338
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1045 bits (2703), Expect = 0.0 Identities = 354/569 (62%), Positives = 443/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGNAS +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.6 bits (97), Expect = 8e-06 Identities = 49/253 (19%), Positives = 83/253 (32%), Gaps = 10/253 (3%) Query: 52 KLTSDSPTQQQDQKVAQNTASNDSQEATTLENTASTDNTTATTDETYTKSTDTTVAGAAQ 111 K D+ + A ++ + T A + + T T T TK T T Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 112 KVETDNTA----VQSAEQTLKTDVAKVQADASAKDFDETTFQADQAAEQTAEKALQQAES 167 KVET+ T V S + VQ A ++ T + QT A + + Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 168 KLNTDQQTLNTALQDQTKTPTPSTPPTKEEPKHTASSGTPPAPESPPAKKDETSGTPSAS 227 K + N T + E P++T + T P S + K + S Sbjct: 1173 KETSS----NVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSV- 1227 Query: 228 GSSVASQLTKDTTMVNNLKSVSVSAMNTTLSGVETMSQQTATIGNLLNSSTDLSSVIPNA 287 SV + TT N+ +V++ + +T + + LN +S I Sbjct: 1228 -RSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQL 1286 Query: 288 QGLNSAFSTLESA 300 + N + + Sbjct: 1287 EMNNEGQYNVWVS 1299
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.003 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 6/148 (4%) Query: 50 PKETFLQTDSGMQKIGNTKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPT 109 P ET ++ T ++ + D E+ + ++ V N Q N+ + Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN--TQTNEVAQSGS 1090 Query: 110 QTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDK 169 +T +TQT T E ++ K VE TQ+ + ++ ++ + E ++ Sbjct: 1091 ETKETQTTETKETATVEKEEKAK-VETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149 Query: 170 D---KHAVKELKVKKEAHKEVPKKANSK 194 D + + A E P K S Sbjct: 1150 DPTVNIKEPQSQTNTTADTEQPAKETSS 1177
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.4 bits (146), Expect = 8e-13 Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHHIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L +++IR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 60.1 bits (145), Expect = 2e-11 Identities = 51/266 (19%), Positives = 87/266 (32%), Gaps = 19/266 (7%) Query: 140 ELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEE------KEEVKEEEKEEVKEE 193 E+E N Q +E + +E E E V E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 194 EKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEA-PQELEIPKEETQEQDPIKEETQ 252 K+E K + E+ + Q E KE ++A Q E+ + + + +T Sbjct: 1044 SKQESKTVEKNEQDATETTAQNRE--VAKEAKSNVKANTQTNEVAQ---SGSETKETQTT 1098 Query: 253 ENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTE 312 E KE + ++ E E QE+ K + S QE E Q AE ++ + + E Sbjct: 1099 ETKETATVEKEEKAKV-ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 313 KTQAQ----ELEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQDKEVQELE- 367 + E P ++T + E + E P++ +Q E Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 368 IPKEETQENTET-PQDVETPQEKETQ 392 PK + + + P +VE Sbjct: 1218 KPKNRHRRSVRSVPHNVEPATTSSND 1243 Score = 54.3 bits (130), Expect = 1e-09 Identities = 39/252 (15%), Positives = 87/252 (34%), Gaps = 15/252 (5%) Query: 257 EKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQA 316 EK+ +T D+ + +Q V + N+ ++ P + Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 317 QELEVPKEKTQESAEAL-QETQAHELEKQEIAETPQDVEIPQSQDKE------------- 362 QE + ++ Q++ E Q + + K + Q E+ QS + Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 363 VQELEIPKEETQENTETPQ-DVETPQEKETQEDHYESIEDIPEPVMAKAMGEELPFLNEA 421 V++ E K ET++ E P+ + ++E E E E + E N Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTT 1165 Query: 422 VAKIPNNENDTETPKESVTETSKNENNTETPQEKEESDKTSSPLELRLNLQDLLKSLNQE 481 + + ++ VTE++ + E + ++ + + K+ ++ Sbjct: 1166 ADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRR 1225 Query: 482 SLKSLLENKTLS 493 S++S+ N + Sbjct: 1226 SVRSVPHNVEPA 1237 Score = 50.1 bits (119), Expect = 2e-08 Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 3/165 (1%) Query: 168 QEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKE 227 E +E + E +E EKEE + E E+ +E P+ + + Q E ++E Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 228 LEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNG 287 + ++ P+ +T + Q KE Q + + +V+ + + Sbjct: 1149 NDPTVNIKEPQSQTNTT---ADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPA 1205 Query: 288 QENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEA 332 ES+ P+++ + V + + A Sbjct: 1206 TTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALC 1250
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 195 bits (496), Expect = 9e-65 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKKEAEYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + E S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.2 bits (60), Expect = 0.029 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 3/48 (6%) Query: 103 GETILKALEFIAFE---EFQLHSLHLEVMENNFKAIAFYEKNHYELEG 147 + + AL A E E L LE + N A FY K+H+ + Sbjct: 103 KKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 93.0 bits (231), Expect = 3e-24 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 13/213 (6%) Query: 144 FEEVRD-ASVIYHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNK 202 FEE ++ + VA ++ + L PLK EPY++ N Sbjct: 14 FEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNT 73 Query: 203 ENFALVQ--KADSSITANKALIRSLVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWY 260 ++ D++IT ++A+ + + YV RE + + + + S+ Sbjct: 74 GEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAR--EEYFDAVMVMSARPEQD 131 Query: 261 EFEKLIA-----HYDSIYTNPLLTRKVKIANI-YLDKDLAYIDIEVSLYHSGELESLKRY 314 + + +I N V+I + +L ++A + +G + Sbjct: 132 RWSRFYKTDNPQSPQNILAN-RTDVFVEIKRVSFLGGNVAQVYFTKESV-TGSNSTKTDA 189 Query: 315 KVVMSFEFKKQEINFDSMSLNPTGFMVTSYDVT 347 + ++ NP G+ V SY Sbjct: 190 VATIKYKVDGTPSKEVDRFKNPLGYQVESYRAD 222
>adhesinb#Adhesin B signature. Length = 310 Score = 29.0 bits (65), Expect = 0.032 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 12/123 (9%) Query: 53 ERTPWDLESLLRDYNFVFSNTTGQHNQALERKETPYFDSVIVDEAAKANPLELLMVMALA 112 E P D++ + +F N G + LE +F ++ E AK + ++ Sbjct: 71 EPLPEDVKKT-SQADLIFYN--GIN---LETGGNAWFTKLV--ENAKKKENKDYYAVSEG 122 Query: 113 KERIILVGDDRQL---PHY-LDDEIGKKLEDESQDAQDEIEKALKDSMFKKLKERAQKLK 168 + I L G + PH L+ E G E + A K++ K LK +KL Sbjct: 123 VDVIYLEGQSEKGKEDPHAWLNLENGIIYAQNIAKRLSEKDPANKETYEKNLKAYVEKLS 182 Query: 169 ELD 171 LD Sbjct: 183 ALD 185
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.007 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 30 VVALLGESGAGKSTILRILAGLE 52 V L G G GKST++ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 196 bits (501), Expect = 3e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPANPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>PF03944#delta endotoxin Length = 633 Score = 31.2 bits (70), Expect = 0.005 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQYDSQFLALVPLSAKKSQNLN 161 + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 30.2 bits (68), Expect = 0.019 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 277 APENSKEKLIEELIANSQLVANEEEREKKLLAEKEKQ--------EAELAKY--KLKDLE 326 S + EE+ E +E L K E ++ +Y K+ +LE Sbjct: 44 GTLQSIADMAEEVTF-----VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELE 98 Query: 327 NQKKLKALEAELKKKN 342 ++ + L + L Sbjct: 99 QKQNVSELLSLLSNSP 114
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.4 bits (81), Expect = 0.003 Identities = 33/173 (19%), Positives = 71/173 (41%), Gaps = 23/173 (13%) Query: 970 KARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKL 1029 + NE+ + E + P A ++ + + ++KT + ++ T + R++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPAT--PSETTETVAENSKQESKTVEKNEQDATETTAQNREV 1068 Query: 1030 LEEAKESVKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEQQVLDCLKNAKTEADKKRCV 1089 +EAK +VKA A++ E KE + T E + +++ AK E +K + V Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKTQEV 1122 Query: 1090 KDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKE 1142 KV ++ S K + ++E + + E + ++E + Sbjct: 1123 --------PKVTSQVSPK-------QEQSETVQPQAEPARENDPTVNIKEPQS 1160 Score = 35.4 bits (81), Expect = 0.003 Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 12/179 (6%) Query: 713 TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDC 772 P ++ + + ++KT + ++ T + ++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 773 VSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAK 832 A++ E KE + T E + +++ KT + K + PK Q + + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVET-EKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 833 ESVKAYLDCVSQAKTEAEKKECEKYLDCVSQAKNEAEKKECEKLLTLESKKKLEEAKKS 891 QA+ E + SQ A+ ++ K + ++ + E+ Sbjct: 1142 -----------QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTV 1189 Score = 34.7 bits (79), Expect = 0.004 Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 10/191 (5%) Query: 842 VSQAKTEAEKKECEKYLDCVSQAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQ 901 + +E + + A E + + SK++ + +K+ Q Sbjct: 1005 ADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN--------EQ 1056 Query: 902 AKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESL 961 TE + E ++ Q + ++ + + ++K+ AK Sbjct: 1057 DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET 1116 Query: 962 KAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKL 1021 + ++ K+E + + P+A+ E + SQ T A+ ++ K Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND--PTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 1022 LTPEARKLLEE 1032 + + + E Sbjct: 1175 TSSNVEQPVTE 1185 Score = 34.7 bits (79), Expect = 0.005 Identities = 33/185 (17%), Positives = 75/185 (40%), Gaps = 8/185 (4%) Query: 968 VSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDC--VSQAKTEAEKKECEKLLTPE 1025 SK + E+ E T + +++ +EAK +VKA V+Q+ +E ++ + + Sbjct: 1047 ESKTVEKNEQDATET--TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 1026 ARKLLEEAKESVKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEQQVLDCLKNAK----T 1081 + E+AK + ++ K+E + + P+A+ E +K + T Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNT 1164 Query: 1082 EADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAK 1141 AD ++ K+ ++++ V +V V N + + + K + Sbjct: 1165 TADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHR 1224 Query: 1142 ESLKA 1146 S+++ Sbjct: 1225 RSVRS 1229
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 875 bits (2262), Expect = 0.0 Identities = 514/522 (98%), Positives = 518/522 (99%) Query: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAAALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 MGQAFFKKIVGCFCLGYLFLSSAIEA ALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EETIKQRAKDKINIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EE ++QRAKDKI+IKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQKELIKQENLNTTAYINRVMMASNE 360 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQ+ELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (297), Expect = 8e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 28.2 bits (62), Expect = 0.042 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKELVALGFKKIKTLHQRHDDEEVTKEEKEFATNALREKLRNDRARAEQI 83 A+N AL+ +Y+E + K K + D +E+ +++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSIQKKAAKHKGLQELNEINATPLNDNPNSNSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L + P N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.1 bits (73), Expect = 0.012 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFKKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 75.3 bits (185), Expect = 4e-20 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPHSNF-SLALF 96 L+MTSFTR+I+VF LR ALGT PP+ LALF Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALF 95
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 174 bits (442), Expect = 4e-58 Identities = 70/127 (55%), Positives = 98/127 (77%) Query: 1 MDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMI 60 ++KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ Sbjct: 117 SEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVT 176 Query: 61 SELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLT 120 SELKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 121 ENLVASF 127 +L SF Sbjct: 237 GSLAQSF 243
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.9 bits (77), Expect = 0.002 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 510 SKPKPTTETTAETKEKETKEKEIQENDTKEIQEVQPKQAPTALQEFMANHSEL-IEEIKS 568 + P TTET AE ++E+K E E D E + A A AN + + S Sbjct: 1031 ATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGS 1090 Query: 569 EFE 571 E + Sbjct: 1091 ETK 1093
>SECA#SecA protein signature. Length = 901 Score = 23.7 bits (51), Expect = 0.038 Identities = 8/17 (47%), Positives = 12/17 (70%) Query: 8 ELEEKTKGLSDEEIKAK 24 +E + + LSDEE+K K Sbjct: 30 AMEPEMEKLSDEELKGK 46
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.015 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 309 EEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEILECMQDDLNVSKALS 359 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L +V+KA+S Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLA----KKDVAKAIS 234
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 92.8 bits (230), Expect = 2e-24 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 12/243 (4%) Query: 1 MGEKKESQKVAVITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALC------E 54 M K K+A ITGA+ GIG A L QG + A+ + + +L E Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 55 SVDIDVSDSNALKEVFSNISAKEKYCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFAL 114 + DV DS A+ E+ + I + D+L+N AG G + EE + FSVN + Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 115 CEVVQFCLPLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNV 174 + + ++ I + S V + Y++SK A ++ L LEL +N+ Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 175 QVCLIEPGPVKSNWEKTAFSVENFESEDSLYALEVNAAKSFYSGVYQNALS-PKAVAQKI 233 + ++ PG +++ + + ++ EN + + + ++F +G+ L+ P +A + Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQ-----VIKGSLETFKTGIPLKKLAKPSDIADAV 235 Query: 234 VFL 236 +FL Sbjct: 236 LFL 238
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 123 bits (310), Expect = 5e-37 Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 2/117 (1%) Query: 1 MRNIEARK-EKGDKEAKLAFEMCAYRIKKHIGAYMVVLKKVDAIIFTGGLGENYSALRES 59 R++E + GDK A+LA + AYR+KK IG+Y + VD I+FT G+GEN +RE Sbjct: 283 FRDLEDAAFKNGDKRAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREF 342 Query: 60 VCEGLENLGIALCKPTNDNPGSGLVNLSQPDAKIQILRIPTDEELEIALQTKKVLEK 116 + +GLE LG L K N G + +S D+K+ ++ +PT+EE IA T+K++E Sbjct: 343 ILDGLEFLGFKLDKEKNKVRGEEAI-ISTADSKVNVMVVPTNEEYMIAKDTEKIVES 398
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 353 bits (907), Expect = e-123 Identities = 142/282 (50%), Positives = 192/282 (68%), Gaps = 6/282 (2%) Query: 1 MEILVLNLGSSSIKFKLFDMKENKPLASGLAEKIGEEIGQLKIKSHLHHNDQELKEKFVI 60 M+ILV+N GSSS+K++L + K+ LA GLAE+IG L N +++K K + Sbjct: 1 MKILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHN----ANGEKIKIKKDM 56 Query: 61 KDHASGLLMIRENLT--KMGIIKDFNQIDAIGHRVVQGGDKFHAPVLVNEKVMQEIGNLS 118 KDH + ++ + L G+IKD ++IDA+GHRVV GG+ F + VL+ + V++ I + Sbjct: 57 KDHKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCI 116 Query: 119 ILAPLHNPANLAGIEFVQKAHPHIPQIAVFDTAFHATMPSYAYMYALPYELYEKYQIRHY 178 LAPLHNPAN+ GI+ + P +P +AVFDTAFH TMP YAY+Y +PYE Y KY+IR Y Sbjct: 117 ELAPLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKY 176 Query: 179 GFHRTSHHYVAKEAAKFLNTAYEEFNAISLHLGNGSSAAAIQKGKSVDTSMGLTPLEGLI 238 GFH TSH YV++ AA+ LN E I+ HLGNGSS AA++ GKS+DTSMG TPLEGL Sbjct: 177 GFHGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLA 236 Query: 239 MGTRCGDIDPTVVEYTAQCANKSLEEVMKMLNHESGLKGICG 280 MGTR G IDP+++ Y + N S EEV+ +LN +SG+ GI G Sbjct: 237 MGTRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISG 278
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.8 bits (82), Expect = 5e-04 Identities = 40/227 (17%), Positives = 70/227 (30%), Gaps = 11/227 (4%) Query: 294 KKSEKTPIHAKTQTTAPSATPENAPKIPLKTPPLMPLIGANPPPNDNIPTPLEKEEKAKE 353 + Q PS N + P+ P A TP E E E Sbjct: 992 VDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA---------TPSETTETVAE 1042 Query: 354 ASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQEYKPPMSRI 413 S + KT E + Q + + KS T + Q E +E + ++ Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 414 SMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSF 473 + + +E KVE +K + KV+ Q+ Q N + Sbjct: 1103 TATVEKEEKAKVET--EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQS 1160 Query: 474 SQDSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQENTDNENQETS 520 +++ + + P + ++ N S EN +N T+ Sbjct: 1161 QTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Score = 30.4 bits (68), Expect = 0.025 Identities = 48/240 (20%), Positives = 82/240 (34%), Gaps = 18/240 (7%) Query: 184 PKTLKDIQTLSQKHDLNASNIQAATTPENKN------PLNASDQLALKTTQTPTNHTLAK 237 P+ K QT+ + +NIQA N A T + T T+A+ Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 238 NDAKNTANLSSVLQSLEKKEPQNKEHANPLNNEKKTPPLK--------EALEMNAIKRDK 289 N + + + Q + QN+E A + K E E + + Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 290 TLSKKKSEKTPIHAKTQTTAPSATPENAPKIPLKTPPLMPLIGANP-PPNDNIPTPLEKE 348 T + +K EK + + P T + +PK + A P ND E + Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPK---QEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 349 EKAKEASDNKEKTKETSNSAQNAQNTQASDKTSDNKSTAPKETIKHFTQQLKQEIQEYKP 408 + +D ++ KETS++ + + T ++ P+ T TQ KP Sbjct: 1160 SQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.3 bits (81), Expect = 7e-04 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 2 NDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGY 34 + + NA SG+ Q +++ SNNI++ N GY Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGY 33 Score = 33.0 bits (75), Expect = 0.004 Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 557 IRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLK 604 + ++ S VN NL Q+ Y NA+ + + I+++ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 42.1 bits (99), Expect = 3e-06 Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 12/176 (6%) Query: 210 AASIATLSNDERELGVACVDMGGETCNLTIYSGNSIRYNKYLPVGSHHLTTDL------S 263 AA+I G VD+GG T + + S N + Y+ + +G + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 264 HMLNTPFPYAEEVKIKYGDLSFEGGEETPSQNVQIPTTGSDGHESHIVPLSEIQTIMRER 323 + AE +K + G S G+E V+ + +EI ++E Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 324 ALETFKIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELARTHFTNYPVRLA 376 + +++ E + G+VLTGG AL++ + L T PV +A Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLM-EETGIPVVVA 318
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.3 bits (65), Expect = 0.010 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 9/63 (14%) Query: 50 YNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKP 109 ++R ++P E F P+ + + N+ A+EK D ++++ L+ E FEK P Sbjct: 293 HSRSGEQPKGFTESFKAPE---------LGVGNLGASEKSDVFLVVSTLLHCIEGFEKNP 343 Query: 110 ELK 112 E+K Sbjct: 344 EIK 346
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 570 bits (1471), Expect = 0.0 Identities = 129/610 (21%), Positives = 229/610 (37%), Gaps = 75/610 (12%) Query: 6 SSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVDVEA 65 S +N + +GL A Q+ ++ NNIS+ + Y+RQ I + + V GV V Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61 Query: 66 IERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYFPDIDEASLFTDLQDYFNSWKELS 125 ++R +D F+ + A +++ + + + +SL T +QD+F S + L Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNML-STSTSSLATQMQDFFTSLQTLV 120 Query: 126 KNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIAEINK 185 NA+D A +QAL K+E L + K T + L + + + + + ++N+ QIA +N Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 186 RIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNL 245 +I + + N L D+RD+L L +++G V S +YN+ Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEV--------------SVQDGGTYNI 226 Query: 246 NIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVTNITDK-LNQGRVGALLNVY 304 + +G++++ GS L S V + I +K LN G +G +L Sbjct: 227 TMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFR 286 Query: 305 NDGSNGTLKGKLQDYIDLLDSFAKGLIESTNAIYAQSASHYIEGEPVEFNSDEAFKDTNY 364 + L + L A E+ N + +A D N Sbjct: 287 SQ--------DLDQTRNTLGQLALAFAEAFNTQH------------------KAGFDANG 320 Query: 365 NIKNGSFDL----IAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQ-----DNNT 415 + F + + NT K +T + + I+ + + Q N T Sbjct: 321 DAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTT 380 Query: 416 ENDFDDYFTAGFNNETKKFVIQPKNASQGLFVSMKDNGTNFMGALKLNPFFQGDDASNIS 475 D + + + + + M L D + I+ Sbjct: 381 FTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLI-------TDEAKIA 433 Query: 476 LNKEYKKEPTTIRPWLAPINGNFDVANMMQQLQYDSVDFYNDKFDIKPMKISEFYQFLTG 535 + E E G+ D N L S N K ++ Y L Sbjct: 434 MASE---EDA----------GDSDNRNGQALLDLQS----NSKTVGGAKSFNDAYASLVS 476 Query: 536 KINTDAEKSGRILDTKKSMLETIKKEQLSISQVSVDEEMVNLIKFQSGYAANAKVITAID 595 I T+ +++ + +Q SIS V++DEE NL +FQ Y ANA+V+ + Sbjct: 477 DIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 536 Query: 596 RMIDTLLGIK 605 + D L+ I+ Sbjct: 537 AIFDALINIR 546
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.7 bits (74), Expect = 0.002 Identities = 25/145 (17%), Positives = 49/145 (33%) Query: 27 GATKKELKQLQINSKNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQE 86 K + ++ +A EG + + KIK L + E Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 87 ESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLV 146 L+ + E N S ++ L E A + L+ Q++ ++ L +DL Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 147 SQIALIQKALKEQEEKAEKPLKSNA 171 + ++ E ++ E+ S A Sbjct: 320 ASREAKKQLEAEHQKLEEQNKISEA 344
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 147 bits (373), Expect = 6e-46 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 KMDNKTVAGDVSAKTVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAVESGTIIASIYFDF 80 + DN ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGETKPKC-----AQKTR----ECYKENRRVDVKL 177 + KG+ D I GE+ P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.004 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 69 QISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVV---GLYDY 125 VI T F SNL A FE + D + ++ VV G+YDY Sbjct: 414 TFGSVIPATGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGEVVIPGGVYDY 473 Query: 126 IIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIR 170 I + PA G + I A P + + FA E K T+R Sbjct: 474 CITNPEPASGKMWI----AGDGGNQPARYDDFAFEAGKKYTFTMR 514
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 30.3 bits (68), Expect = 0.008 Identities = 12/33 (36%), Positives = 21/33 (63%) Query: 70 EPEVQILKDLKPNFIVVVAYGKILPKEVLTIAP 102 EP +++L ++KP+F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 112 bits (282), Expect = 5e-29 Identities = 74/361 (20%), Positives = 143/361 (39%), Gaps = 31/361 (8%) Query: 97 AKDLAYKSENFILRLEMIPKKANLMILDKEKCVIEA--FRFNDRVAKNDILGALPPN-IY 153 + ++ ++ +N + L + K + + I++ F FN N +G N + Sbjct: 209 SSEICFRLKNNSIDLSLSNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMS 268 Query: 154 EHQEEDLDFKGLLDILEKDFLFYQHKE----LEHKKNQIIKRLNAQKERLKEKLEKLEDP 209 + + + + +LE FY K+ L+ K + + K + R +K + L + Sbjct: 269 KEDYKKIQYDSSSKLLEN---FYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNT 325 Query: 210 KNLQLEAKELQTQASLLLTYQHLIHKHESRVVLKDFED---KERAIEIDKSMPLNAFINK 266 + + LL + + K S + L ++ I +D++ + + Sbjct: 326 LKKCEDKDIFKLYGELLTANIYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQS 385 Query: 267 KFTLSKKKKQKSQFLYLEEENLKEKIAFKENQINYVKGAQEESVLE------------MF 314 + K K+ + + +E++ + + + + A +E F Sbjct: 386 YYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKF 445 Query: 315 MPSKNSKIKRPMSGYEVLYYKDFKIGLGKNQKENIKL-LQDARANDLWMHVRNIPGSHLI 373 SK + + I +GKN +N L L+ A +D+W H +NIPGSH+I Sbjct: 446 KKIYKSKKSKTSKPMHFISKDGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVI 505 Query: 374 VFCQKNAPKDDVIMELAKMLIKMQKDAFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRT 429 V + P + ++E A + K +S +DYT+ K VK GA VIYS +T Sbjct: 506 VKNIMDIP-ESTLLEAANLAAYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQT 564 Query: 430 I 430 I Sbjct: 565 I 565 Score = 35.2 bits (81), Expect = 5e-04 Identities = 20/92 (21%), Positives = 48/92 (52%), Gaps = 5/92 (5%) Query: 46 SAPYIGLSKKPPESVLKNTLALDFCLNKFTRNAKILQANIIDNDRI--LEINGAKDLAYK 103 + P I L+ + +K + L K+ NAKI+ + I+ DRI ++ +L + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 104 SENFILRLEMIPKKANLMILDK-EKCVIEAFR 134 S + L +E++ + +N+ ++ K + ++++ + Sbjct: 114 SI-YSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 27.4 bits (61), Expect = 0.030 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Query: 22 DRFKNALFTKEPGGTR-------MGESLRRIALNENISELARAFL 59 DR++ L PG R M +LR++ ++ +S ++ L Sbjct: 159 DRWETELNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQL 203
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 224 bits (573), Expect = 1e-78 Identities = 64/147 (43%), Positives = 93/147 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMIQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS+ ERL+ I A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEI 150 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 26.3 bits (58), Expect = 0.032 Identities = 13/38 (34%), Positives = 21/38 (55%) Query: 76 LSHALKTRYKEITELYLKISKLEISPNSQVGASVKIRY 113 LS++ R +E L+ +L++S N VG +IRY Sbjct: 147 LSNSSAYRMREALIPLLRNFELKLSKNKIVGEEYRIRY 184
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 5e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 127 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 177 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 132 bits (334), Expect = 2e-40 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYVQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.8 bits (66), Expect = 0.017 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 18/110 (16%) Query: 155 FIEDKNYYSNAFLKPQKENMAENAPKDAPTNNKPLKEEKEETKEKEEETITIGDNTNAMK 214 I+ +N + A++ N A + N + ++EEK++ + + + NA+K Sbjct: 339 LIKQENLNTTAYI-----NRVMMASNEQIINKEKIREEKQKIILDQAKALETQYVHNALK 393 Query: 215 IVKKDIQKGYKALKSSQRKWYCLGICSKKSKLSLMPKEIFNDKQFTYFKF 264 + + + Y ++ + K+SK +MP EIF+D FTYF F Sbjct: 394 --RNPVPRNYNYYQAPE----------KRSK-HIMPSEIFDDGTFTYFGF 430
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 30.7 bits (69), Expect = 0.015 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 3/88 (3%) Query: 272 ALFEEAANEPKENVSLNQTPVFAKESENNLVFSHKVSAL---LGVENLAVIDTKDALLIA 328 +LF P +V++ P A + H VS+ L N+ ++D LL Sbjct: 162 SLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQ 221 Query: 329 HKDKAKDLKALVNEVETNNQELLQTHTK 356 +DL + + + +Q + Sbjct: 222 SNTSGRDLNDAQLKFANDVESRIQRRIE 249
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.5 bits (217), Expect = 2e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 52.9 bits (127), Expect = 4e-10 Identities = 51/346 (14%), Positives = 106/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELC-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKA 102 D++ + + R + ++ + Y NL L + + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYEKVAQVLDYKGVFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QRALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>FLAGELLIN#Flagellin signature. Length = 507 Score = 284 bits (728), Expect = 3e-92 Identities = 130/519 (25%), Positives = 221/519 (42%), Gaps = 18/519 (3%) Query: 2 SFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANL 61 + INTN +L + ++ LSS++E+LSSGLRIN A DD++G AIA+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLE 121 QA RNAND I + QT + A++E L ++ +VQA + +++Q +IQ+ LE Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSG 181 E+D ++N T FNG ++LS + Q+GA T+ + +G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVN---- 175 Query: 182 AGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVR 241 + ++ +FK V G + Y + + +G + + V Sbjct: 176 -----GPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN 230 Query: 242 ASYNVMATG----GTPVQSGTVRELTINGVEIGTVNDVHKNDADGRLTNAINSVKDRTGV 297 A+ + T T V + T E + K +G T V Sbjct: 231 AANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGD-TFDYKGVTFTIDT 289 Query: 298 EASLDIQGRINLHSIDGRAISVHAASASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARD 357 + D G+++ +I+G +++ A + S D + Sbjct: 290 KTGNDGNGKVST-TINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 358 IIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAG 417 S ++ +G ++ TVN + + AG + + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 418 --VTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRD 475 + K + DSA +++D +RS +G++Q + I N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 476 VDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 D+A E +N SK IL Q+G+ +AQAN V QNVL LL+ Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 55.5 bits (133), Expect = 3e-10 Identities = 29/184 (15%), Positives = 59/184 (32%), Gaps = 10/184 (5%) Query: 96 DDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNI 155 + EVA++ E + + K + ++EK K E E KT++ + TS + Sbjct: 1078 ANTQTNEVAQSGSETKETQTTETK------ETATVEKEEKAKVETE--KTQEVPKVTSQV 1129 Query: 156 E-TNNQIKVEQKQQKTEQEKQKTEQEKQKTEQE-KQKTEQEKQKTSNIETNNQIKVEQKQ 213 Q + Q Q + +E T K+ Q ++ K ++ + Sbjct: 1130 SPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTV 1189 Query: 214 QKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQ 273 + E T Q +E + + + + + T ++ Sbjct: 1190 NTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Query: 274 KDLV 277 DL Sbjct: 1250 CDLT 1253 Score = 54.7 bits (131), Expect = 6e-10 Identities = 38/231 (16%), Positives = 79/231 (34%), Gaps = 14/231 (6%) Query: 102 EVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI 161 T+ AEN++ + + + T Q ++ ++ K + Q T+ + + Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQ-TNEVAQSGSE 1091 Query: 162 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIE-TNNQIKVEQKQQKTEQEK 220 E + +T++ ++EK K E E KT++ + TS + Q + Q Q + +E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETE--KTQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149 Query: 221 QKTEQEKQKTEQE-KQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKY 279 T K+ Q ++ K ++ + + NT + Sbjct: 1150 DPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ- 1208 Query: 280 AEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPN 330 E+ N+ K V + +PA T+ L + Sbjct: 1209 -PTVNSESSNK-------PKNRHRRSVRSVPHNVEPATTSSNDRSTVALCD 1251 Score = 52.4 bits (125), Expect = 3e-09 Identities = 27/188 (14%), Positives = 66/188 (35%), Gaps = 4/188 (2%) Query: 98 QSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIET 157 Q+++ E + + + E ++ +T + K+ EK++ + + + + Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVP 1123 Query: 158 NNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTE 217 +V KQ+++E + + E ++ K Q + T+ + ++ Sbjct: 1124 KVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPV 1183 Query: 218 QEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQ----QKTEQEKQKTNNTQ 273 E E + T Q T N E++N+ K + E T++ Sbjct: 1184 TESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSND 1243 Query: 274 KDLVKYAE 281 + V + Sbjct: 1244 RSTVALCD 1251 Score = 50.1 bits (119), Expect = 2e-08 Identities = 44/232 (18%), Positives = 79/232 (34%), Gaps = 12/232 (5%) Query: 109 EAENARDRANKSGIE-LEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNI---ETNNQIKVE 164 E E + + I Q E+ + E + ET + Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 165 QKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI--KVEQKQQKTEQEKQK 222 KQ+ EK E+ TE Q E K+ SN++ N Q + + E + + Sbjct: 1044 SKQESKTVEK----NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 223 TEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQ 282 T++ ++EK K E EK + T +Q+ +QEQ +T Q Q + D ++ Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVT-SQVSPKQEQSETVQ-PQAEPARENDPTVNIKE 1157 Query: 283 NCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQP 334 + + ++ + +E T + P + QP Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.9 bits (64), Expect = 0.045 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 29/142 (20%) Query: 163 ELANSQIKAEQERQKTEQEKQ-----------------------KANKSAIELEQQKQKT 199 ++ AE +Q+++ ++ KAN E+ Q +T Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 200 INTQRDLIKEQKDFIKETEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTP 259 TQ KE KE + + Q K + E +PA+ N Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 260 IQPKHLPNSKQPHSQRGSKAQE 281 + N K+P SQ + A Sbjct: 1153 V------NIKEPQSQTNTTADT 1168
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 294 bits (755), Expect = 4e-92 Identities = 106/446 (23%), Positives = 187/446 (41%), Gaps = 68/446 (15%) Query: 388 DLEHMNSFKEGEILVTDN-TDPDWEPCMKK-ASAVITNRGGRTCHAAIVAREIGVPAIVG 445 + + + E +++ ++ T D K+ T+ GGRT H+AI++R + +PA+VG Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 446 VSGATDSLYTGMEITVSCAEGE---------EGYVYAGIYEHEIERVELSNMQETQT--- 493 T+ + G + V EG E ++ E + + + Sbjct: 206 TKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTK 265 Query: 494 -----KIYINIGNPEKAFGFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEK 548 ++ NIG P+ G G+GL R E + +++ + P Sbjct: 266 DGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQ-LPTE------------- 311 Query: 549 NEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEP 608 E Y K++ + KPV++RT D ++ + L P Sbjct: 312 ---EEQFEAY--------KEVVQ-------RMDGKPVVIRTLDIGGDKELSYL----QLP 349 Query: 609 NEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVL 668 E NP LG+R + F + AL N+KVM P + T+EE ++ Sbjct: 350 KELNPFLGFRAIRLCLE--KQDIFRTQLRALL---RASTYGNLKVMFPMIATLEELRQAK 404 Query: 669 EILRKNNLESGKNG------LEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGV 722 I+++ + G +E+ IM E+P + A+ F D FSIG+NDL Q T+ Sbjct: 405 AIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAA 464 Query: 723 DRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITS 782 DR +E VS+++ + A+L++ I+A K+ G+CG+ D L+ G+ Sbjct: 465 DRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLGLGLDE 523 Query: 783 ISLNPDSVIPTWNAVAKLE-KELKEH 807 S++ S++P + + KL +ELK Sbjct: 524 FSMSATSILPARSQLLKLSKEELKPF 549
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 559 bits (1443), Expect = 0.0 Identities = 178/582 (30%), Positives = 294/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKVSKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ + I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL + + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GASKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGVNTLEYEPLSDESLQKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +++I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPVIDNATLSEKIMHKTQKILGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEYKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 SFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 351 bits (902), Expect = e-123 Identities = 122/338 (36%), Positives = 209/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDIV LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.2 bits (68), Expect = 0.010 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEA 102 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEK 223
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 141 bits (358), Expect = 8e-38 Identities = 100/437 (22%), Positives = 176/437 (40%), Gaps = 85/437 (19%) Query: 3 NIRNFSIIAHIDHGKSTLADCLISECNAIS---NREMKSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 119 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNHLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNTNEVSAKARLGIKD--------- 170 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 171 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 198 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 199 F--------------------DNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 238 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 239 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTSKPIEGFMPAKPFV 295 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 296 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 355 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 356 EREFGLNLIATAPTVVY 372 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.4 bits (71), Expect = 0.011 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 2/82 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTEGYASFDYEPIENREAN 480 L T G + E Sbjct: 593 LTFFTNGRSVCLTELKGYHVTT 614
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 82.8 bits (204), Expect = 5e-21 Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 21/233 (9%) Query: 4 ILVSGATSGFGLEIAKAFLQKNHVVFGTGRRKENLQKL------QLAYPKHFIPLCFDLQ 57 ++GA G G +A+ + + E L+K+ + + + F P D++ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF-PA--DVR 67 Query: 58 NKLETKRALEAIFSMTDRIDALINNAGLALGLNKAYECELDDWEIMIDTNIKGLLHLTRL 117 + I ID L+N AG+ L + ++WE N G+ + +R Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 118 ILPSMIEHDQGTIINLGSIAGTYAYPGGNVYGASKAFVKQFSLNLRADLAGTNIRVSNVE 177 + M++ G+I+ +GS Y +SKA F+ L +LA NIR + V Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 178 PGLCGETEFSMVRFKGDKIKAQSV------YENTIYL----KPQDIANIVLWI 220 PG ET+ + + Q + ++ I L KP DIA+ VL++ Sbjct: 187 PG-STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 120 bits (302), Expect = 2e-33 Identities = 62/341 (18%), Positives = 131/341 (38%), Gaps = 48/341 (14%) Query: 1 MALLFTGACGYIGSHTARAFLEKTKENIIIVDDLSTGF---LEHLKALEHYYPNRVVFIQ 57 M L TGA G+IG H ++ LE + ++ +D+L+ + L+ + P F + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQ-VVGIDNLNDYYDVSLKQARLELLAQPG-FQFHK 58 Query: 58 ANLNETHKLDAFLNKQQLKDPIEAILHFGAKISVEESTHLPLEYYTNNTLNTLELVKLCL 117 +L + + E + +++V S P Y +N L +++ C Sbjct: 59 IDLADREGMTDLFASGH----FERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR 114 Query: 118 KHAIKRFIFSSTAVVYGKSSS-SLNEESPLN-PINPYGASKMMSERILLDTSKIADFKCV 175 + I+ +++S++ VYG + + + ++ P++ Y A+K +E + S + Sbjct: 115 HNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPAT 174 Query: 176 ILRYFNVAGACMHNDYTTPYTLGQRTLNATHLIKIACECAVGKRKKMGIFGTNYPTRDGT 235 LR+F V G D + + L GK ++ G Sbjct: 175 GLRFFTVYGPWGRPD-MALFKFTKAMLE-------------GKSID--VYN------YGK 212 Query: 236 CIRDYIHVDDLANAHLASYQTLLEKNKS---------------EIYNVGYNQGHSVKEVI 280 RD+ ++DD+A A + + + +YN+G + + + I Sbjct: 213 MKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYI 272 Query: 281 EKVKEISNNDFLVEILDKRQGDPASLIANNAKILQNTSFKP 321 + +++ + +L + GD A+ + + F P Sbjct: 273 QALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTP 313
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.2 bits (65), Expect = 0.033 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 24/133 (18%) Query: 100 VFAPLSLLVSAILLVFSLILIPTSKSTYYGFLRQKKDKIDINIRAGEFGQKLGDWLV--- 156 V AP+S LV A+ + S IL + ++ + + D I E+ +K G Sbjct: 391 VGAPVSALVGAVTGIISGILEASKQAMFEHVASKMADVIA------EWEKKHGKNYFENG 444 Query: 157 YVDKTKNNSYDNLVLFS--NKSLSQESFILAQKGNINNQNGVFEL--------NLYNGHA 206 Y + DN + S NK S E +L + + + G EL +G + Sbjct: 445 YDARHAAFLEDNFKILSQYNKEYSVERSVLITQQHWDTLIG--ELAGVTRNGDKTLSGKS 502 Query: 207 Y---FTQGDKMRK 216 Y + +G ++ K Sbjct: 503 YIDYYEEGKRLEK 515
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.7 bits (67), Expect = 0.006 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLTDVLGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 52.7 bits (126), Expect = 3e-10 Identities = 24/52 (46%), Positives = 27/52 (51%) Query: 91 PQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 142 P P P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 67 PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 46.5 bits (110), Expect = 4e-08 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 142 A Q PP P P P P P P E P KPKPKP+PK K V+ Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVK 104 Query: 143 KVEEKKVVEEKKEE 156 KV+E+ + K E Sbjct: 105 KVQEQPKRDVKPVE 118 Score = 45.4 bits (107), Expect = 9e-08 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPK-KPNHKHKALKKV 141 P P P P P P PPK +PKPKPKP+PK + + + V Sbjct: 55 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDV 114 Query: 142 EKVEE 146 + VE Sbjct: 115 KPVES 119 Score = 38.8 bits (90), Expect = 1e-05 Identities = 43/218 (19%), Positives = 80/218 (36%), Gaps = 38/218 (17%) Query: 101 PTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIV 160 P PP +P +P EP+P+P+P P+ P +E VV EK + K Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-------------KEAPVVIEKPKPKPKP 98 Query: 161 EQKVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDIDELYGE 220 + K +KV+++ + KPV E P N T + Sbjct: 99 KPKPVKKVQEQPKRDVKPV--------------ESRPASPFENTAPARLTSSTATAATSK 144 Query: 221 EFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKI 280 + + + RN + YP A L +G V+F + P+G + +++I Sbjct: 145 PVTSVASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQI 193 Query: 281 IIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 318 + M + ++ + +P + ++ I + Sbjct: 194 LSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 35.0 bits (80), Expect = 3e-04 Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 91 PQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPN 132 P+ P P P P PKP K + +PK +P + Sbjct: 79 PEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 29.6 bits (66), Expect = 0.013 Identities = 13/48 (27%), Positives = 19/48 (39%) Query: 84 PKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKP 131 + P K P P PKP++K + +PK KP +P Sbjct: 74 EPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 121
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 27.8 bits (61), Expect = 0.031 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%) Query: 25 NQTTELRHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLAL-----ASLEEVK 79 N+ E+ K E A ++ + T QI + K P+ +L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 80 EIIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 131 E + + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 49.1 bits (117), Expect = 2e-08 Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Query: 37 LSDIAKSFEMESATVGLMITAYAWVVSLGSLPLMLLSAKIERKRLLLFLFALFILSHILS 96 L DIA F A+ + TA+ S+G+ LS ++ KRLLLF + ++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 97 ALAWNFW-VLLLSRMGIAFAHSIFWSITASLVIRVAPRNKKQQALGLLALGSSLAMILGL 155 + +F+ +L+++R + F ++ +V R P+ + +A GL+ ++ +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 156 PLGRIIGQILDW 167 +G +I + W Sbjct: 157 AIGGMIAHYIHW 168
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.011 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 11/86 (12%) Query: 124 SEQIEL--EQEKQKTSNIETNNQIKVEQEKQKT-------SNIETNNQI--KVEQEQQKT 172 SE E E KQ++ +E N Q E Q SN++ N Q + + Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 173 EQERQKTEQERQKTEQEKQKTIKTQK 198 E + +T++ ++EK K + Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKT 1119
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.5 bits (63), Expect = 0.026 Identities = 40/222 (18%), Positives = 66/222 (29%), Gaps = 25/222 (11%) Query: 3 DKVQDKSKQAEKENQINWWKYSGLTIATSLLL--AACSVGDIDKQIELEQEKKEAENARD 60 + V + SKQ K + N + T + A +V + E+ Q E + + Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 61 RANKSGIELE-QEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKGGIAIEVEAECKT 119 K +E +EK K E+ V K Q E Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ---------------SETVQPQ 1142 Query: 120 PKPAKTNQTPIQPKHLPNSKQPHSQRGSKA-QELIAYLQKELESLPYSQKAIAKQVNFYR 178 +PA+ N + N K+P SQ + A E A P ++ N Sbjct: 1143 AEPARENDPTV------NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVV 1196 Query: 179 PSSVAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLGNEKPT 220 + + +E K + R ++ E T Sbjct: 1197 ENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPAT 1238
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.012 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query: 180 EALRIVDKLEKIGLNGVEEELKKECGLNSNTIKELLELIQIKQNDL--SHAEFFEKIA 235 + ++KLEK G + E LKKE G+ + I L +K + L HA+ F+KIA Sbjct: 263 DMFEYMNKLEKGGFEKISESLKKE-GVEKDRIDVLKGEKALKASGLVPEHADAFKKIA 319
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 642 bits (1658), Expect = 0.0 Identities = 179/671 (26%), Positives = 304/671 (45%), Gaps = 66/671 (9%) Query: 9 RIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAAT 68 +I NIG+ AH+DAGKTT +E +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGV 128 + W++ ++N+IDTPGH+DF EV RS+ VLDGA+ + + GVQ Q+ ++ K G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVWNN 188 P I F+NK+D+ G + V IK +L A V Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVI--------------------------- 154 Query: 189 ETMGAKYDVEEIPSDLLEKAKEYREKLVEAVAEQDEALMEKYLGGEELSIEEIKKGIKAG 248 K VE P+ + E + + V E ++ L+EKY+ G+ L E+++ Sbjct: 155 -----KQKVELYPNMCVTNFTESEQ--WDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 207 Query: 249 CLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGE 308 N SL P+ GS+ N G+ L++ + + + T E Sbjct: 208 FHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH-------------------RGQSE 248 Query: 309 FAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKE 368 G FKI +L ++R+Y G L V S K+K ++ + + + I + Sbjct: 249 LCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGELCKIDK 307 Query: 369 VYAGEICAFVG----LKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQEKMG 424 Y+GEI L L GDT + ER+E P P++ VEP +E + Sbjct: 308 AYSGEIVILQNEFLKLNSVL-GDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLL 362 Query: 425 VALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRE 484 AL ++++ DP R T + ++ +G++ +E+ L+ ++ VE EI +P V + E Sbjct: 363 DALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME 422 Query: 485 TIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKG 544 R E+ + + + + + P GSG ++ + +S G + + + AV +G Sbjct: 423 --RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 480 Query: 545 IQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPM 604 I+ + G L G+ V D K+ G Y+ S+ F++ + ++ + A LLEP Sbjct: 481 IRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPY 539 Query: 605 MKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQG 664 + ++ P+EY+ D + I + I++ +P + Y +DL T G Sbjct: 540 LSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNG 599 Query: 665 RGTYSMEFDHY 675 R E Y Sbjct: 600 RSVCLTELKGY 610
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 431 bits (1110), Expect = e-148 Identities = 162/581 (27%), Positives = 275/581 (47%), Gaps = 81/581 (13%) Query: 9 RLILAIALSFLFIALYSYFFQKPNKTTTQTTKQETTNNHTATSPNAPNAQHFSTTQTTPQ 68 R +L IAL F+ ++ Q T T+ A + + Q Sbjct: 5 RNLLVIALLFVSFMIW-------QAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQ 57 Query: 69 ENLLSTISFEHARIEIDSLG-RIKQVYLKDKKYLTPKQKGFLEHVG--HLFSSKEN---- 121 L+ ++ + + I++ G ++Q L P L L + Sbjct: 58 GKLI-SVKTDVLDLTINTRGGDVEQALL-------PAYPKELNSTQPFQLLETSPQFIYQ 109 Query: 122 AQPPL--KELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDL 177 AQ L ++ P A+ +PL +N A G NE V D Sbjct: 110 AQSGLTGRDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDA 156 Query: 178 GTLSIIKTLTFYDDLHYDLKIAFKSPNN------------------LIPSYVITNGYRPV 219 + KT Y + + + N L P + + Sbjct: 157 AGNTFTKTFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFAL 215 Query: 220 ADLDSYTFSGVLLENSDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQ 276 +TF G D+K EK + D + + S +++ + +YF T + Sbjct: 216 -----HTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-D 269 Query: 277 GFEALIDSEIGTKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDV 325 G + +G N + I K++ N ++GP+ + A++P L Sbjct: 270 GTNNFYTANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLT 327 Query: 326 IEYGLITFFAKGVFVLLDYLYQFVGNWGWAIILLTIIVRIILYPLSYKGMVSMQKLKELA 385 ++YG + F ++ +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ L Sbjct: 328 VDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQ 387 Query: 386 PKMKELQEKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELK 445 PK++ ++E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ Sbjct: 388 PKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELR 447 Query: 446 SSEWILWIHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFTIFLI 505 + + LWIHDLS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT+F + Sbjct: 448 QAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFL 507 Query: 506 TFPAGLVLYWTTNNILSVLQQLIINKVLENKKRMHAQNKKE 546 FP+GLVLY+ +N+++++QQ +I + LE K+ +H++ KK+ Sbjct: 508 WFPSGLVLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKK 547
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.009 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Query: 64 KEESVKETNTKEIHQSAEEKKQKLETETPQEEIITPKPSKKNPKEE 109 + + + T TKE +E+K K+ETE QE S+ +PK+E Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEV--PKVTSQVSPKQE 1134
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.4 bits (71), Expect = 0.008 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 KGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLN 318 + KV +IDT G + ++ R SL L D + + ++ + L L Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RAKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 293 bits (751), Expect = e-105 Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.8 bits (64), Expect = 0.011 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.8 bits (77), Expect = 8e-04 Identities = 28/183 (15%), Positives = 77/183 (42%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQATVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIAERL-KNVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + + R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLTPEDVLNNPKFATIKAIKNKQVY 277 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.0 bits (75), Expect = 0.001 Identities = 29/184 (15%), Positives = 75/184 (40%), Gaps = 12/184 (6%) Query: 106 NVELLKKLGPDLVVTFVGNPKAVEHAKKF--GILFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIAERLKGVKKKKGVELFHKAN----KISGHQALDSDILEKGGI 216 + A LA+ ++ + + R + + + L + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVK-RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 217 DN-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLTPEDVLNNPKFATIKAIKNKQV 274 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 275 YKLP 278 ++P Sbjct: 267 QRVP 270