>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.035 Identities = 7/17 (41%), Positives = 13/17 (76%) Query: 52 LLIQGPSGVGKSTLVKE 68 ++++G G+GKSTL+ Sbjct: 599 VVLEGTGGIGKSTLINT 615
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 31.1 bits (70), Expect = 0.007 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 319 EVGLRLRYEIVRQFAPYIGVTWSRSYGKTADFIR 352 + L L Y + F PYIGV WSR+ AD IR Sbjct: 272 QASLALSYRL-NMFTPYIGVKWSRA-SFDADTIR 303
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 43.2 bits (101), Expect = 4e-06 Identities = 32/115 (27%), Positives = 41/115 (35%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S S G D + G AG + AG A + G S AG + S + Sbjct: 870 STSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLI 929 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG A + MAG A S AG +M G D S +A G+ Q Sbjct: 930 AGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQ 984 Score = 42.8 bits (100), Expect = 4e-06 Identities = 32/113 (28%), Positives = 40/113 (35%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S S G + + G A + MAG A S AG SMAG D S + Sbjct: 918 STSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLI 977 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 AG AG + AG A + AG G D S +A G+ Sbjct: 978 AGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGS 1030 Score = 40.5 bits (94), Expect = 2e-05 Identities = 33/115 (28%), Positives = 39/115 (33%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S G D + G AG + S+MAG AG AG D S + Sbjct: 198 STGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLI 257 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG AG D S AG A AG G D S +A G+ Q Sbjct: 258 AGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQ 312 Score = 40.5 bits (94), Expect = 2e-05 Identities = 29/102 (28%), Positives = 36/102 (35%) Query: 379 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 438 G S AG + S +AG A + MAG A S AG SMAG D Sbjct: 915 GYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDS 974 Query: 439 SKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 S +AG AG + AG + A G+ Sbjct: 975 SLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTA 1016 Score = 40.1 bits (93), Expect = 3e-05 Identities = 31/109 (28%), Positives = 38/109 (34%) Query: 379 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 438 G A + G S AG + S +AG A + MAG A Sbjct: 899 GYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQS 958 Query: 439 SKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQNHPASET 487 S AG SMAG D S +AG G + A G+ Q S T Sbjct: 959 SLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSST 1007 Score = 39.7 bits (92), Expect = 4e-05 Identities = 31/113 (27%), Positives = 39/113 (34%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S M G A S AG SMAG D S +AG AG + Sbjct: 934 STQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLT 993 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 AG A + AG + AG D S +AG +G+ A G+ Sbjct: 994 AGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGS 1046 Score = 39.4 bits (91), Expect = 5e-05 Identities = 28/101 (27%), Positives = 39/101 (38%) Query: 378 GGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMD 437 G SMAG D S +AG AG + AG A + AG + AG D Sbjct: 962 AGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGAD 1021 Query: 438 HSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 S +AG +G+ AG ++G+ A G+ Sbjct: 1022 SSLIAGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGS 1062 Score = 39.4 bits (91), Expect = 5e-05 Identities = 31/115 (26%), Positives = 37/115 (32%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S G + M G AG AG D S +AG AG D S Sbjct: 214 STQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLT 273 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG A AG AG D S +AG G + + A G+ Q Sbjct: 274 AGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQ 328 Score = 39.0 bits (90), Expect = 7e-05 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 1/98 (1%) Query: 379 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 438 G S AG D S +AG AG + AG A + G S AG + Sbjct: 867 GYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYES 926 Query: 439 SKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAAS 476 S +AG A + MAG + T +QS++ A Sbjct: 927 SLIAGYGSTQTASFKSTLMAGYG-SSQTAREQSSLTAG 963 Score = 38.6 bits (89), Expect = 8e-05 Identities = 32/115 (27%), Positives = 39/115 (33%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S G D + G AG D S AG A AG AG D S + Sbjct: 246 STGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLI 305 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG AG + ++ AG A AG G D S +A G+ Q Sbjct: 306 AGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQ 360 Score = 38.6 bits (89), Expect = 9e-05 Identities = 32/115 (27%), Positives = 38/115 (33%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S G D G A AG AG D S +AG AG + ++ Sbjct: 262 STQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQT 321 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG A AG AG D S +AG G D S A G+ Q Sbjct: 322 AGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQ 376 Score = 37.4 bits (86), Expect = 2e-04 Identities = 28/115 (24%), Positives = 37/115 (32%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S G + G A + G S AG D S +AG AG + Sbjct: 838 STQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILT 897 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG A + G S AG + S +AG + MA G+ Q Sbjct: 898 AGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQ 952 Score = 37.4 bits (86), Expect = 2e-04 Identities = 29/115 (25%), Positives = 42/115 (36%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S S G D + G AG + AG A + AG + AG D S + Sbjct: 966 STSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLI 1025 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG +G+ AG ++G+ AG ++G S A G+ Q Sbjct: 1026 AGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQ 1080 Score = 37.0 bits (85), Expect = 3e-04 Identities = 29/115 (25%), Positives = 39/115 (33%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S S G D + G AG + AG A + G S AG D S + Sbjct: 822 STSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLI 881 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG AG + AG A + G + G + S +A G+ Q Sbjct: 882 AGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQ 936 Score = 36.7 bits (84), Expect = 3e-04 Identities = 29/95 (30%), Positives = 37/95 (38%) Query: 386 AGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMD 445 AG + +AG AG D + +AG AG + S+MAG AG Sbjct: 186 AGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYG 245 Query: 446 HGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG D S +AG G D S A G+ Q Sbjct: 246 STGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQ 280 Score = 36.3 bits (83), Expect = 4e-04 Identities = 26/104 (25%), Positives = 36/104 (34%) Query: 371 GMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDH 430 G MAG S+ A AG + MAG D +AG ++ AG Sbjct: 931 GYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQS 990 Query: 431 GSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMA 474 AG ++ A AG + AG D + G S + Sbjct: 991 TLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTS 1034 Score = 36.3 bits (83), Expect = 5e-04 Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 1/97 (1%) Query: 379 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 438 G S AG D S +AG AG + AG A + G S AG D Sbjct: 819 GYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDS 878 Query: 439 SKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAA 475 S +AG AG + AG T + S++ Sbjct: 879 SLIAGYGSTQTAGYNSILTAGYG-STQTAQENSDLTT 914 Score = 35.5 bits (81), Expect = 9e-04 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 10/123 (8%) Query: 368 SDMGMDHGSMG--GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S + +GS G D +AG ++ AG + AG ++ A AG + Sbjct: 622 SVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTST 681 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMA--------GMDHGNMTGMDQSNMAASG 477 AG D +AG ++ AG + AG ++ A G + G D S +A G Sbjct: 682 AGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYG 741 Query: 478 AMQ 480 + Q Sbjct: 742 STQ 744 Score = 35.1 bits (80), Expect = 0.001 Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 10/123 (8%) Query: 368 SDMGMDHGSMG--GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMA--------GMDHGSM 417 SD+ +GS G G D +AG ++ A AG ++ A G S Sbjct: 574 SDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTST 633 Query: 418 AGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASG 477 AG D S +AG AG + AG A AG + G D S +A G Sbjct: 634 AGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYG 693 Query: 478 AMQ 480 + Q Sbjct: 694 STQ 696 Score = 34.7 bits (79), Expect = 0.001 Identities = 30/115 (26%), Positives = 37/115 (32%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S S G D + G AG + AG A +G S AG D S + Sbjct: 678 STSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLI 737 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG A S AG A G + G D S +A G+ Q Sbjct: 738 AGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQ 792 Score = 34.7 bits (79), Expect = 0.001 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 368 SDMGMDHGSMGGMDHGS--MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S + +GS H S +AG + +++ G +AG S+ AG ++G D +M Sbjct: 1070 SSLTAGYGSNQIASHRSSLIAGPESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQM 1129 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGM-------DHSKMAGMDHGNMTGMDQSNMAA 475 AG +AG D ++ AG +AG D SK+ + + D+S + A Sbjct: 1130 AGERGKLIAGADSTQTAGDRSKLLAGNNSYLTAGDRSKLTAGNDCILMAGDRSKLTA 1186 Score = 34.3 bits (78), Expect = 0.002 Identities = 25/93 (26%), Positives = 38/93 (40%) Query: 386 AGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMD 445 AG + AG D +AG ++ AG D AG ++ A AG + AG D Sbjct: 242 AGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGAD 301 Query: 446 HGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 +AG ++ AG + G + A G+ Sbjct: 302 SSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGS 334 Score = 34.3 bits (78), Expect = 0.002 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 2/113 (1%) Query: 368 SDMGMDHGSMGGMDHGS--MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S + +GS GS AG + AG D +AG ++ AG + AG ++ Sbjct: 270 SSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQT 329 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 A AG + AG D +AG ++ AG D G + A G+ Sbjct: 330 AQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGS 382 Score = 34.0 bits (77), Expect = 0.002 Identities = 25/94 (26%), Positives = 39/94 (41%) Query: 385 MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGM 444 +AG + AG D +AG ++ AG + MAG ++ AG + AG Sbjct: 193 IAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGD 252 Query: 445 DHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 D +AG ++ AG D G + A G+ Sbjct: 253 DSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGS 286 Score = 34.0 bits (77), Expect = 0.003 Identities = 25/87 (28%), Positives = 29/87 (33%) Query: 394 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMD 453 +G S AG D S +AG A S AG A G S AG D Sbjct: 722 SGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGAD 781 Query: 454 HSKMAGMDHGNMTGMDQSNMAASGAMQ 480 S +AG G A G+ Q Sbjct: 782 SSLIAGYGSTQTAGYHSILTAGYGSTQ 808 Score = 33.6 bits (76), Expect = 0.003 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 2/110 (1%) Query: 373 DHGS--MGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDH 430 +H S G + AG D S +AG +G+ AG ++G+ AG Sbjct: 1003 EHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGS 1062 Query: 431 GSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 ++G S AG +A S +AG + +TG +A G+ Q Sbjct: 1063 SLISGRRSSLTAGYGSNQIASHRSSLIAGPESTQITGNRSMLIAGKGSSQ 1112 Score = 32.8 bits (74), Expect = 0.005 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 386 AGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMD 445 AG ++ A AG + AG D +AG S +G+ AG + ++G+ Sbjct: 994 AGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLR 1053 Query: 446 HGSMAGMDHSKMAGMDHGNMTGMDQSNMAAS 476 AG S ++G ++T SN AS Sbjct: 1054 SVLTAGYGSSLISGR-RSSLTAGYGSNQIAS 1083 Score = 32.4 bits (73), Expect = 0.007 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 2/115 (1%) Query: 366 SMSDMGMDHGSMGGMDHGS--MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHS 423 S + +GS S G + AG D +AG ++ AG + AG + Sbjct: 604 YHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGST 663 Query: 424 KMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 + A AG + AG D +AG ++ AG + G + A G+ Sbjct: 664 QTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGS 718 Score = 32.4 bits (73), Expect = 0.007 Identities = 25/81 (30%), Positives = 27/81 (33%) Query: 379 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 438 G S AG D S +AG A S AG A G S AG D Sbjct: 723 GYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADS 782 Query: 439 SKMAGMDHGSMAGMDHSKMAG 459 S +AG AG AG Sbjct: 783 SLIAGYGSTQTAGYHSILTAG 803 Score = 30.9 bits (69), Expect = 0.023 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 3/101 (2%) Query: 377 MGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGM 436 + G AG + ++G D MAG +AG D AG D SK+ ++ + Sbjct: 1105 IAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTAG-DRSKLLAGNNSYLTAG 1163 Query: 437 DHSKM-AGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAAS 476 D SK+ AG D MAG D SK+ + +T +S + S Sbjct: 1164 DRSKLTAGNDCILMAG-DRSKLTAGINSILTAGCRSKLIGS 1203 Score = 30.5 bits (68), Expect = 0.030 Identities = 22/96 (22%), Positives = 35/96 (36%) Query: 385 MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGM 444 A + AG + AG D S +AG +G+ AG ++G+ AG Sbjct: 1001 TAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGY 1060 Query: 445 DHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 ++G S AG + S +A + Q Sbjct: 1061 GSSLISGRRSSLTAGYGSNQIASHRSSLIAGPESTQ 1096 Score = 30.1 bits (67), Expect = 0.037 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 377 MGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGM 436 + G+ AG S ++G AG +++A +AG + +++ G +AG Sbjct: 1049 ISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQIASHRSSLIAGPESTQITGNRSMLIAGK 1108 Query: 437 DHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAA 475 S+ AG ++G D +MAG + G + S A Sbjct: 1109 GSSQTAGYRSTLISGADSVQMAG-ERGKLIAGADSTQTA 1146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 7e-24 Identities = 36/117 (30%), Positives = 63/117 (53%) Query: 2 KLLVAEDEPKIGAYLQQGLTEAGFTVDRVVTGTDALQYALSEAYDLLILDVMMPGLDGWE 61 +LVA+D+ I L Q L+ AG+ V ++ + DL++ DV+MP + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 118 +L ++ A ++PVL ++A++ +K E GA DYL KPF +EL+ + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 0.027 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 22/104 (21%) Query: 356 VSNILSNALRYTPEGHDIAVRIVEAADQVNLSVQNNGATIDPEHINKIFDRFYRADPARR 415 V N + + + P+G I ++ + V L V+N G Sbjct: 264 VENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-------------------SLAL 304 Query: 416 EGSPSNAGLGLAITRSIIEAHGG---RIWCTSADGVTSFHIALP 456 + + + G GL R ++ G +I + G + + +P Sbjct: 305 KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.005 Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 12/103 (11%) Query: 310 AARRAQVRQLEDEQEAALREHKAQLETDLADYQR----LQRAVQRSRETLLPLAEDRVRL 365 ++ L EQ + + K Q E +L + + + R Sbjct: 181 EEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDF 240 Query: 366 ALADYRAGKSPLSEVLTARRQRVETRLQDIDLQGQLAATAARL 408 + + VL + VE +L ++L Sbjct: 241 S-SLLHKQAIAKHAVLEQENKYVE-------AVNELRVYKSQL 275
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.1 bits (112), Expect = 1e-07 Identities = 45/226 (19%), Positives = 74/226 (32%), Gaps = 37/226 (16%) Query: 134 ERTYGRATGDVVAKGAPLADVLTPEWAGLQEEYLALQRSGDNELRAAARQRLLLAGMPAD 193 E Y A ++ + L + E +EEY + + NE+ RQ Sbjct: 258 ENKYVEAVNELRVYKSQLEQ-IESEILSAKEEYQLVTQLFKNEILDKLRQTTDNI---GL 313 Query: 194 LINRIDRTGRVQNSVTLLAPTAGVLQALELR-PGMTMTPGATLAKINGIANV-WLEAAVP 251 L + + Q + + AP + +Q L++ G +T TL I + + A V Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQ 373 Query: 252 EAQAQGLQEGQAVQANLAAFPGE---PVPGKLTALLADADLQSRT---LRLRIELP---- 301 + GQ + AFP + GK+ + DA R + I + Sbjct: 374 NKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCL 433 Query: 302 ---NPGGRLRPGMTAQVSLHPSGQQDDSLLVPAEAIIRTGKRDLVM 344 N L GM A I+TG R ++ Sbjct: 434 STGNKNIPLSSGM------------------AVTAEIKTGMRSVIS 461 Score = 29.0 bits (65), Expect = 0.041 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 5/97 (5%) Query: 103 GQLARTLQVSGVLTFDERDFSVLQARTGGYVERTYGRATGDVVAKGAPLADVLTPEWAGL 162 GQ+ +G LT R + + V+ + G+ V KG L + G Sbjct: 78 GQVEIVATANGKLTHSGRSKEI-KPIENSIVKEIIVK-EGESVRKGDVLLKLTAL---GA 132 Query: 163 QEEYLALQRSGDNELRAAARQRLLLAGMPADLINRID 199 + + L Q S R ++L + + + + Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 669 bits (1728), Expect = 0.0 Identities = 207/1056 (19%), Positives = 428/1056 (40%), Gaps = 47/1056 (4%) Query: 5 LIRWSVGNRVLVLLATLFAVAWGVFSLRSLPIDALPDLSDVQVIIRTSYPGQAPQIVENQ 64 + + + + + + + G ++ LP+ P ++ V + +YPG Q V++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTYPLTTTMLSVPGAKTVRGFSA-FGDSFVYVLFEDGTDLYWARSRVLEYLSQVQSRLPA 123 VT + M + + S G + + F+ GTD A+ +V L LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 SAK-PVLGPDATGVGWIYQYALVDRSGTHDLAQLRSLQDWFLRFELKTLPDVAEVATIGG 182 + + + + ++ V + + ++ L L V +V G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 183 MVKQYQVVLDPLRMASLGITQVEVSDAIAKANQETGGG------VLEQGEAEFMVRASGY 236 ++ LD + +T V+V + + N + G L + + A Sbjct: 181 Q-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 237 LKSLDDFRAIPLRLAAKGIPVTLGDVATVQLGPEARRGIGELDGQGEAVGGVVILRSGKN 296 K+ ++F + LR+ + G V L DVA V+LG E I ++G+ A G + L +G N Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGAN 298 Query: 297 AKDAIAHVKSKLESLEKSLPAGVELVTTYDRSQLIDRAVENLSQKLIEEFIVVALVCAAF 356 A D +K+KL L+ P G++++ YD + + ++ + + L E ++V LV F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 357 LWHLRSSLVAIVSLPVGVLIALIVMRHQGINANIMSLGGIAIAIGAMVDAAVVMIENAHK 416 L ++R++L+ +++PV +L ++ G + N +++ G+ +AIG +VD A+V++EN + Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 417 RVEAWHTWHPGKSLRGEDHWKVMTEAAVEVGPALFFSLMIITLSFIPVFTLQAQEGRLFA 476 + + ++ ++ AL M+++ FIP+ G ++ Sbjct: 419 VMME----------DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYR 468 Query: 477 PLAFTKTYAMAAAAGLSVTLVPVLMGYWIRGRLPAEERNP------LNRTLIRL---YRP 527 + T AMA + +++ L P L ++ N N T Y Sbjct: 469 QFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTN 528 Query: 528 ALEIVLRRPKLTLAGALLILLSSVWPLSQLGGEFLPPLDEGDLLYMPTALPGLSAQKASE 587 ++ +L L LI+ V +L FLP D+G L M G + ++ + Sbjct: 529 SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588 Query: 588 LLQRTDR--LIRTVPEVASVFGKAGRAESATDPAPLEMFETTVRLKPKDQW-RAGMTTEK 644 +L + L V SVF G + S F V LKP ++ + E Sbjct: 589 VLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAF---VSLKPWEERNGDENSAEA 645 Query: 645 LIEELDRTVQVPGLTNIWIPPIRNRIDMLATGIKSPIGVKVAGSNLNEI-DRVTLAIEKV 703 +I + + + +++ + AG + + + Sbjct: 646 VIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMA 705 Query: 704 AKTVPGVTSALAERLTGGRYIDLDIDRQFAARYGLNIADVQAIVAGAVGGENIGETVEGL 763 A+ + S L L++D++ A G++++D+ ++ A+GG + + ++ Sbjct: 706 AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG 765 Query: 764 ARYPISVRYPREWRDSVDALRQLPIYTSQGGRITLGTVARVRIADGPPMLKSENARPSGW 823 + V+ ++R + + +L + ++ G + G P L+ N PS Sbjct: 766 RVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSME 825 Query: 824 VYIDVR-RRDLSSVVADLRRLVDQQVKLDPGISLSYSGQFEYLERANARLAWVVPATLAI 882 + + +A + L KL GI ++G + + +V + + Sbjct: 826 IQGEAAPGTSSGDAMALMENLAS---KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVV 882 Query: 883 IFVLLYLTFGRLGEALLIMATLPFALTGGVWLLYMMGYNLSVATGVGFIALAGVAAEFGV 942 +F+ L + + +M +P + G + + V VG + G++A+ + Sbjct: 883 VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAI 942 Query: 943 IMLIYLNNAWTERNGNGTQGQPALLDAIREGAVQRIRPKAMTVAVIVAGLMPILWSSGTG 1002 +++ + + E+ G G +A R+RP MT + G++P+ S+G G Sbjct: 943 LIVEFAKDLM-EKEGKGVV------EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAG 995 Query: 1003 SEVMSRIAVPMVGGMLTAPLLSLFVIPAAYWLVRRR 1038 S + + + ++GGM++A LL++F +P + ++RR Sbjct: 996 SGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 82.2 bits (203), Expect = 7e-18 Identities = 97/524 (18%), Positives = 183/524 (34%), Gaps = 54/524 (10%) Query: 4 NLIRWSVGNRVLVLLATLFAVAWGVFSLRSLPIDALPDLSDVQVIIRTSYPGQAP----Q 59 N + +G+ LL VA V LP LP+ + P A Q Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 60 IVENQVT-YPLTTTMLSVPGAKTVRGFSAFG----DSFVYVLFEDGTDLYWARSRVLEYL 114 V +QVT Y L +V TV GFS G +V + + + + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 115 SQVQSRL---------PASAKPVLGPDATGVGWIYQYALVDRSGTHDLAQLRSLQDWFLR 165 + + L P + ++ + + L+D++G L ++ L Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATG---FDFELIDQAGL-GHDALTQARNQLLG 703 Query: 166 FELKTLPDVAEV-ATIGGMVKQYQVVLDPLRMASLGITQVEVSDAIAKA-NQETGGGVLE 223 + + V Q+++ +D + +LG++ +++ I+ A ++ Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 224 QGEA-EFMVRA-SGYLKSLDDFRAIPLRLAAKGIPVTLGDVATVQLGPEARRGIGELDGQ 281 +G + V+A + + +D + +R +A G V T + R + +G Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVR-SANGEMVPFSAFTTSHWVYGSPR-LERYNGL 821 Query: 282 GEAVGGVVILRSGKNAKDAIAHVKSKLESLEKSLPAGVELVTTYDRSQLIDRAVENLSQK 341 G ++ DA+A +E+L LPAG+ S + Sbjct: 822 PSMEIQGEAA-PGTSSGDAMA----LMENLASKLPAGIGY-DWTGMSYQERLSGNQAPAL 875 Query: 342 LIEEFIVVALVCAAFLWHLRSSLVAIVSLPVGVLIALIVMRHQGINANIMSLGGIAIAIG 401 + F+VV L AA + ++ +P+G++ L+ ++ + G+ IG Sbjct: 876 VAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIG 935 Query: 402 AMVDAAVVMIENAHKRVEAWHTWHPGKSLRGEDHWKVMTEAAVEVG-----PALFFSLMI 456 A++++E A +E GK + EA + P L SL Sbjct: 936 LSAKNAILIVEFAKDLME-----KEGKGVV---------EATLMAVRMRLRPILMTSLAF 981 Query: 457 ITLSFIPVFTLQAQEGRLFAPLAFTKTYAMAAAAGLSVTLVPVL 500 I L +P+ + M +A L++ VPV Sbjct: 982 I-LGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024 Score = 72.2 bits (177), Expect = 8e-15 Identities = 86/548 (15%), Positives = 189/548 (34%), Gaps = 73/548 (13%) Query: 530 EIVLRRPKLTLAGALLILLSSVWPLSQLGGEFLPPLDEGDLLYMP-----TALPGLSAQK 584 +RRP A++++++ + QL P + P PG AQ Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIA------PPAVSVSANYPGADAQT 56 Query: 585 -ASELLQRTDRLIRTVPEVASVFGKAGRAESATDPAPLEMFETTVRLKP-----KDQWRA 638 + Q ++ + + + + + A S T T+ + Q + Sbjct: 57 VQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVT---------ITLTFQSGTDPDIAQVQV 107 Query: 639 GMTTEKLIEELDRTVQVPGLTNIWIPPIRNRIDMLATGIKSPIGVKVAGSNLNEIDRVTL 698 + L + VQ G++ ++ ++ G + D Sbjct: 108 QNKLQLATPLLPQEVQQQGIS----------VEKSSSSYLMVAGFVSDNPGTTQDDISDY 157 Query: 699 AIEKVA---KTVPGVTSALAERLTGGRY-IDLDIDRQFAARYGLNIADV--------QAI 746 V + GV +L G +Y + + +D +Y L DV I Sbjct: 158 VASNVKDTLSRLNGVGDV---QLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQI 214 Query: 747 VAGAVGGENIGETVEGLARYPISVRYPREWRDSVDALRQLPIYTSQ-GGRITLGTVARVR 805 AG +GG + A R+ + + ++ + + G + L VARV Sbjct: 215 AAGQLGGTPALPGQQLNASIIAQTRF-----KNPEEFGKVTLRVNSDGSVVRLKDVARVE 269 Query: 806 I-ADGPPMLKSENARPSGWVYIDVRRRDLSSVVADL--RRLVDQQVKLDPGISLSYSGQF 862 + + ++ N +P+ + I + + A +L + Q G+ + Y + Sbjct: 270 LGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYP--Y 327 Query: 863 EYLERANARLAWVVPATL---AIIFVLLYLTFGRLGEALLIMATLPFALTGGVWLLYMMG 919 + + VV ++F+++YL + L+ +P L G +L G Sbjct: 328 DTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFG 387 Query: 920 YNLSVATGVGFIALAGVAAEFGVIMLIYLNNAWTERNGNGTQGQPALLDAIREGAVQRIR 979 Y+++ T G + G+ + ++++ N + + A ++ + Sbjct: 388 YSINTLTMFGMVLAIGLLVDDAIVVV---ENVERVMMEDKLPPKEATEKSMSQIQ----G 440 Query: 980 PKAMTVAVIVAGLMPILWSSGTGSEVMSRIAVPMVGGMLTAPLLSLFVIPA-AYWLVRRR 1038 V+ A +P+ + G+ + + ++ +V M + L++L + PA L++ Sbjct: 441 ALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPV 500 Query: 1039 GLAVHDNP 1046 H+N Sbjct: 501 SAEHHENK 508
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 3e-19 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 2 RVLVVEDEIKTAEYLQQGLSESGYVVDIVHNGVDALHLFNTNVYSLVLLDVNLPGIDGWD 61 +LV +D+ L Q LS +GY V I N LV+ DV +P + +D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLETIRKT-SRVRIIMLTARGRINDKLKGLDGGADDYLVKPFEFPELLARI-RSLQRR 117 LL I+K + +++++A+ +K + GA DYL KPF+ EL+ I R+L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 807 bits (2086), Expect = 0.0 Identities = 234/1064 (21%), Positives = 434/1064 (40%), Gaps = 59/1064 (5%) Query: 5 IIRFAIEQRIVVMIAVLIMAGIGIYSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQR 64 + F I + I + +I+ G + +LP+ P I V ++ PG + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 ITFPVETAMAGLPGLQQTRSLSRS-GLSQVTVIFKDGTDIFFARQLINERLQVAKEQLPE 123 +T +E M G+ L S S S G +T+ F+ GTD A+ + +LQ+A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GVEAVMGPVSTGLGEIFLWTVEAEDGAVKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAE 183 V+ V +L D T D+ +K L + GV + Sbjct: 121 EVQQQGISVEKSSS-SYLMVA-----GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGD 174 Query: 184 INTIGGYAKQFLVAPDPKRLATYKLTLNDLVAALESNNANVGAGYI------ERNGEQLL 237 + G + D L YKLT D++ L+ N + AG + Sbjct: 175 VQLFGA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNAS 233 Query: 238 IRAPGQVGNIEDIANIVI-TSVDGAPIRISSVADVSIGKELRTGAATENGREVVLGTVFM 296 I A + N E+ + + + DG+ +R+ VA V +G E A NG+ + + Sbjct: 234 IIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKL 293 Query: 297 LIGENSRTVSQAVAAKLADINRTLPKGVVAVTVYDRTNLVEKAIATVKKNLVEGAILVIA 356 G N+ ++A+ AKLA++ P+G+ + YD T V+ +I V K L E +LV Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 357 ILFLFLGNIRAALITAMVIPLSMLFTFTGMFNNKVSANLMSLG--ALDFGIIVDGAVVIV 414 +++LFL N+RA LI + +P+ +L TF + S N +++ L G++VD A+V+V Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 415 ENAIRRLAHAQHKHGRMLTKTERFHEVFAAAREARRPLIFGQLIIMVVYLPIFALTGVEG 474 EN R + K + + + L+ +++ V++P+ G G Sbjct: 414 ENVERVMMED---------KLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 475 KMFHPMAFTVVMALLGAMVLSVTFVPAAIAMFVTGKVKEEEGVVMRTARL---------- 524 ++ + T+V A+ ++++++ PA A + E Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVN 524 Query: 525 RYEPVLQWVLGHRNIAFSAAVALVVLSGLLASRMGSEFIPSLSEGDFAMQAMRVPGTSL- 583 Y + +LG +V +L R+ S F+P +G F G + Sbjct: 525 HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQE 584 Query: 584 -TQSVEMQQRLEKAVIAQVPEVERMFARSGTAEIASDPMPPNASDAYIMLKPQDQWPNPK 642 TQ V + Q + + + VE +F +G + NA A++ LKP ++ + Sbjct: 585 RTQKV-LDQVTDYYLKNEKANVESVFTVNG---FSFSGQAQNAGMAFVSLKPWEERNGDE 640 Query: 643 KPRDELIAEVQKAAAGVPESNYELSQPIQLRFNELISGVRSDVA-VKVFGDDMDVLNNTA 701 + +I + + + EL + D + G D L Sbjct: 641 NSAEAVIHRAKMELGKIRDGFVIPFNM--PAIVELGTATGFDFELIDQAGLGHDALTQAR 698 Query: 702 NKIAAALKAVPGS-SEVKVEQTSGLPVLTINIDREKAARYGLNIADVQNSIAIAVGGRQA 760 N++ P S V+ + +D+EKA G++++D+ +I+ A+GG Sbjct: 699 NQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYV 758 Query: 761 GTLYEGDRRFDMVVRLPETVRTDVAGMSSLLIPVPANAAQGANQIGFIPLSQVANLDLQL 820 + R + V+ R + L V + + +P S Sbjct: 759 NDFIDRGRVKKLYVQADAKFRMLPEDVDKL--YVRSANGE------MVPFSAFTTSHWVY 810 Query: 821 GPNQISRENGKRLVIVSANVRGRDLGSFVEEATASLDK-KVQIPAGYWTTWGGQFEQLQS 879 G ++ R NG + + G+ +A A ++ ++PAG W G Q + Sbjct: 811 GSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWTGMSYQERL 867 Query: 880 AAKRLQIVVPVALLLVMTLLFLMFNNLKDGMLVFTGIPFALTGGVVALWLRDIPLSISAG 939 + + +V ++ ++V L ++ + + V +P + G ++A L + + Sbjct: 868 SGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFM 927 Query: 940 VGFIALSGVAVLNGLVMIAFIRGLRE-EGRTLRQAVDEGALTRLRPVLMTALVASLGFIP 998 VG + G++ N ++++ F + L E EG+ + +A RLRP+LMT+L LG +P Sbjct: 928 VGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLP 987 Query: 999 MALATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYHWAHRK 1042 +A++ G G+ Q + V+GG++S+T L + +P + R Sbjct: 988 LAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.1 bits (112), Expect = 8e-08 Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 16/139 (11%) Query: 149 ASQQISDLRSEQQAAQRRVELARVTFEREKQLWQDKISAEQDYLQARQALQEAEISLANA 208 A ++ +S+ + + + A+ ++ QL++++I Q + + LA Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL--DKLRQTTDNIGLLTLELAKN 321 Query: 209 KQKVGAIGASVNSVGGNRYELRAPFDAVVVE-KHLTVGEVVSEATNAFILSDLNQV-WAT 266 +++ +RAP V + K T G VV+ A ++ + T Sbjct: 322 EERQQ------------ASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVT 369 Query: 267 FAVPPTDLGKVTTGRAVKV 285 V D+G + G+ + Sbjct: 370 ALVQNKDIGFINVGQNAII 388 Score = 39.8 bits (93), Expect = 2e-05 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 13/130 (10%) Query: 88 AGVALEAAAPRDLGTVVSFPGEIRFDEDRTAHVVPRVPGVVEAVQANLGETVKKGQVLAV 147 +A + + V + G++ + P +V+ + GE+V+KG VL Sbjct: 68 LVIAFILSVLGQVEIVATANGKLTHSGRSKE-IKPIENSIVKEIIVKEGESVRKGDVLLK 126 Query: 148 IASQQISDLRSEQQAAQRRVELARVTFER---------EKQLWQDKISAEQDYLQARQAL 198 + + ++ Q + AR+ R +L + K+ E + + Sbjct: 127 LTALG---AEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEE 183 Query: 199 QEAEISLANA 208 SL Sbjct: 184 VLRLTSLIKE 193
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.008 Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 8/174 (4%) Query: 170 GRVRAGKSSPVEATRAQVQLAEAQLQVRRAETEKATAYQQLAQITGSSVTVFDRLESPTL 229 V S V+A ++A++ + + +T + + + + V E P + Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV 1125 Query: 230 SPGLPPRTEDLLAKLDQTAEMRQ--AVVQIDKSDASLGSEKAQRIPNLTVSVGSQYDRSV 287 + + P+ E Q R+ V I + + + P S +V Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS------SNV 1179 Query: 288 RERVNTVGLSMPLPLFDRNQGNILSASRRADQARDQRNAVELRLRTETQTALNQ 341 + V N N A+ + + N + R R ++ + Sbjct: 1180 EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHN 1233
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.8 bits (189), Expect = 1e-18 Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 1/129 (0%) Query: 2 RILVIEDEVKTAEYVRQGLTECGYVVDCVHTGSDGLFLAKQHEYELIILDINLPEMDGWQ 61 ILV +D+ + Q L+ GY V + + +L++ D+ +P+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLELLRRKNCPSRIMMLTARSRLADKVRGLENGADDYLIKPFEFPELLARV-RALMRRSD 120 +L +++ +++++A++ ++ E GA DYL KPF+ EL+ + RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 HPASVEVIR 129 P+ +E Sbjct: 125 RPSKLEDDS 133
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 318 bits (817), Expect = e-106 Identities = 108/426 (25%), Positives = 200/426 (46%), Gaps = 9/426 (2%) Query: 41 PRVVRLTIWGVILFFVFLIVWASVAPIDEVTRGEGKAIPSSKVQKIQNLEGGIVAEIFAK 100 R RL + ++ F V + + + ++ V GK S + ++I+ +E IV EI K Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113 Query: 101 EGEIVEVGQPLLRLDETRFASNVGETEADRLAMALRVERLSAE--------VQDSPLKID 152 EGE V G LL+L ++ +T++ L L R + + L + Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173 Query: 153 EELRKAAPSQAASEESLYQSRRQQLQDEIGGLQQQLVQRQQELREYSSKRAQYANSLELL 212 + + + SL + + Q++ + L +++ E ++ +Y N + Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233 Query: 213 RKEIGMSEPLVATGAISQVEVLRLRRAEVENRGQLDSTALAIPRAEAAIREVQSKIEETR 272 + + L+ AI++ VL VE +L + + E+ I + + + Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 273 GKFRSEALTQLNEARTELNKATATSKALDDRVHRTMVTSPVRGIVKQLLVNTIGGVIQPG 332 F++E L +L + + T ++R +++ +PV V+QL V+T GGV+ Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353 Query: 333 SDIIEIVPLDDTLVIEAKILPKDIAFLHPGQEATVKFTAYDYTIYGGLKAKLEQIGADTI 392 ++ IVP DDTL + A + KDI F++ GQ A +K A+ YT YG L K++ I D I Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAI 413 Query: 393 TDEDKKTTYYLIKLRTDRSHLGTDEKPLLIIPGMVATVDIMTGKKTIMSYLLKPIMKARS 452 D+ + + + + + + L T K + + GM T +I TG ++++SYLL P+ ++ + Sbjct: 414 EDQ-RLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVT 472 Query: 453 EALRER 458 E+LRER Sbjct: 473 ESLRER 478
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 93.5 bits (232), Expect = 5e-21 Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 29/214 (13%) Query: 6522 GADTIDGGNGNDIIFGDLITLNGV----VSEGYQALQTYVAQKSGVEVSSVTTSNVHQYI 6577 D + + + + G S + + + S +V + + Sbjct: 278 DRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNVS---- 333 Query: 6578 TEHYTEFDISGAKDGNDILSGGNGNDILFGQGGNDTLDGGRGNDILLGGSGNDTLIGGHG 6637 + GG+GNDIL G ++ L GG GND+L GG+G DTL GG G Sbjct: 334 ---------IAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAG 384 Query: 6638 DDILIGGSGADTFVWKAGDFGNDVIKDFKLSDKDKIDLSDLLQGEKGSTIDNYLKLTTVD 6697 D + GSG D+ V D I DF DKIDLS + S + + T Sbjct: 385 RDTFVYGSGQDSTV-----AAYDWIADF-QKGIDKIDLSAFRNEGQLSFVQDQ--FTGKG 436 Query: 6698 GTTTLQVSSEGKL----NAAGGLANADVTIKLEG 6727 LQ + + G ++ D +++ G Sbjct: 437 QEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVG 470 Score = 39.2 bits (91), Expect = 6e-04 Identities = 40/256 (15%), Positives = 62/256 (24%), Gaps = 79/256 (30%) Query: 6433 GDGTYEFSSLGGTGYADYWNYVDSAAGSTA------SFAVLGGTNGLSKVQAIGLNSDVT 6486 GD Y F+S + + + S +F G +N G SDV Sbjct: 267 GDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVG 326 Query: 6487 LNDLKPYDSAGKPQTNIDPSDLAKAILGHSEATVPGADTIDGGNGNDIIFGDLITLNGVV 6546 + G N ++G+S + + GG GND+++G Sbjct: 327 GLKGNVSIAHGVTIENAIGGSGNDILVGNS-----ADNILQGGAGNDVLYGGA------- 374 Query: 6547 SEGYQALQTYVAQKSGVEVSSVTTSNVHQYITEHYTEFDISGAKDGNDILSGGNGNDILF 6606 G D L GG G D Sbjct: 375 ---------------------------------------------GADTLYGGAGRDTFV 389 Query: 6607 GQGGNDTLDGG--RGNDILLGGSGNDT--------------LIGGHGDDILIGGSGADTF 6650 G D+ D G D G G ++++ A++ Sbjct: 390 YGSGQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSI 449 Query: 6651 VWKAGDFGNDVIKDFK 6666 DF Sbjct: 450 TNLWLHEAGHSSVDFL 465 Score = 38.4 bits (89), Expect = 0.001 Identities = 24/107 (22%), Positives = 30/107 (28%), Gaps = 9/107 (8%) Query: 6591 DGNDILSGGNGNDILFG----QGGNDTLDGGRGNDILLGGSGNDTLIGGHGDDILIG--- 6643 D N G D + G N T G + D LI Sbjct: 237 DYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVW 296 Query: 6644 -GSGADTFVWKAGDFGNDVIKDFKLSDKDKIDLSDLLQGEKGSTIDN 6689 G DTF + N I + S D L + G TI+N Sbjct: 297 DAGGTDTFDFSGYS-NNQRINLNEGSFSDVGGLKGNVSIAHGVTIEN 342
>PF06872#EspG protein Length = 398 Score = 28.5 bits (63), Expect = 0.032 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Query: 187 GNWRPTLTAEQLAQVQE---VIHPVVRTHPENGRKALFVSEGFTTRI 230 G W P + ++ Q Q V+ PV H E GR S+G + RI Sbjct: 61 GLWNPKYSQDERQQFQGLLTVLEPVSPAHNELGRVYAKFSDGSSLRI 107
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.4 bits (201), Expect = 8e-20 Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 6/152 (3%) Query: 3 VLIVDDEPQGRERLTRLLGELEGYTVLEPSATNGEEALALIESLKPDVVLLDIGMPGLDG 62 +L+ DD+ R L + L GY V +N I + D+V+ D+ MP + Sbjct: 6 ILVADDDAAIRTVLNQAL-SRAGYDVR--ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 63 LQVAARLCEREAPPAVVFCTG--DDEYGAEAFKDSTLSHVTKPFQPQALRDALRKAEKPN 120 + R+ + V+ + +A + ++ KPF L + +A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 121 RAQLAALTRPANEGGGPRSHISARTRKGIELI 152 + + + L + +G SA ++ ++ Sbjct: 123 KRRPSKLEDDSQDGMPLVGR-SAAMQEIYRVL 153
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 118 bits (297), Expect = 3e-35 Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 15/220 (6%) Query: 6 VLGLCLLAPIALAD-----SDDHDLAYSLGASLGERLRQEMPGLQLDALVEGLKQSYQGQ 60 ++GL + +A D +D L+YS+GA LG+ + + + D L +G++ G Sbjct: 10 IMGLAMSTAMAATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQDGMSGA 69 Query: 61 PLKLDKARMQAVLQQHE-------AQEGDASVQKLQAAETRFMANERGRYGVHELAEGVL 113 L L + +M+ VL + + + E + ++ +A F++ + + G+ L G+ Sbjct: 70 QLILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPSGLQ 129 Query: 114 YSELQAGTGAQPKAGGKVQVRYVGRLPDGSVFDQNQ---TPQWFNLDSVIEGWQVALPKM 170 Y + AGTGA+P V V Y G L DG+VFD + P F + VI GW AL M Sbjct: 130 YKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLM 189 Query: 171 HAGAKWRLVIPSAQAYGAEGAGDLIAPYTPLVFEIELLAV 210 AG+ W + +P+ AYG G I P L+F+I L++V Sbjct: 190 PAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISV 229
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.5 bits (89), Expect = 4e-05 Identities = 27/169 (15%), Positives = 46/169 (27%), Gaps = 12/169 (7%) Query: 196 KPAAKATAAAKPAAKPAAKATAAAKPA-----------AKPAAKATAAAKPAAKPAAKAT 244 T A P+ + A P+ A+ + + + Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 245 AAAKPAAKPAAKATAAAKPAAKPAAKATAAAKPAAKPAAKAPAAKPATAKAPARTATKPA 304 + A + A+ AK AK KA A+ ++ + K A + Sbjct: 1053 KNEQDATETTAQNREVAK-EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Query: 305 AKPVASKPAEAKPATPAASTPAVATNSATPATSAAASTPASTPAQAPSS 353 AK K E T S + + P A + + P S Sbjct: 1112 AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQS 1160
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 4e-22 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 57 PRPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLYHQPRISLMITDLRMQPE 116 +LV DD+A R L L G D A ++ L++TD+ M E Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE 60 Query: 117 DGLDLIRTIRESERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVKKEL 176 + DL+ I++ R L ++V+S A+ G D+L KP DL +L+ ++ + L Sbjct: 61 NAFDLLPRIKK-ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 177 KM 178 Sbjct: 120 AE 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.003 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Query: 8 TLDEIDRQLI--ALLQINARESVATLARQLGIARTTVNSRLERL 49 L E++ LI AL + A A LG+ R T+ ++ L Sbjct: 432 VLAEMEYPLILAALTATRGNQIKA--ADLLGLNRNTLRKKIREL 473
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 330 bits (847), Expect = e-116 Identities = 154/280 (55%), Positives = 193/280 (68%), Gaps = 2/280 (0%) Query: 6 LLAEQPAYFLTLATLLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLGQPIA--QHERFD 63 L P + +L L L++GSFLNV+++RLPIMLER+WQ E + ++ Sbjct: 7 LAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYN 66 Query: 64 LCLPASRCPHCAHPIRAWENIPVISYLALRGRCSSCKTRISPRYPLVEVASALLSLVVAW 123 L +P S CPHC HPI A ENIP++S+L LRGRC C+ IS RYPLVE+ +ALLS+ VA Sbjct: 67 LMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAVAM 126 Query: 124 RFGASVEALLALPLTWCLLALSLIDADHQLLPDALVLPMLWLGLIVNAFGIYAPLTDALW 183 L AL LTW L+AL+ ID D LLPD L LP+LW GL+ N G + L DA+ Sbjct: 127 TLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVI 186 Query: 184 GAVAGYLSLWTVYWLFKLITGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGALVG 243 GA+AGYL LW++YW FKL+TGKEGMGYGDFKL+A +GAW GWQ LP+ LLLSS+VGA +G Sbjct: 187 GAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMG 246 Query: 244 LCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEMYASYM 283 + L+ LR H IPFGPYLAIAGWIA+LWGD + Y+ Sbjct: 247 IGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYL 286
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 55.7 bits (134), Expect = 5e-13 Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 3/73 (4%) Query: 1 MKGQRGITLIELMIVVAIIGILATIALPMYTNHQARSKAAAGLLEISALKTAMDL-RLND 59 QRG TL+E+M+V+ IIG+LA++ +P ++ ++ + +I AL+ A+D+ +L++ Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDN 63 Query: 60 GKDVTGVTELGGQ 72 T T G + Sbjct: 64 HHYPT--TNQGLE 74
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 166 bits (422), Expect = 5e-54 Identities = 87/205 (42%), Positives = 123/205 (60%), Gaps = 6/205 (2%) Query: 5 NLSTDETRVSYGIGRQLGGQLRDNPPPGVSLEAILAGLTDAFNGADSRVSEADLSASF-K 63 +L+TD+ ++SY IG LG + N ++ + + G+ D +GA ++E + K Sbjct: 26 SLTTDKDKLSYSIGADLGKNFK-NQGIDINPDVLAKGMQDGMSGAQLILTEEQMKDVLSK 84 Query: 64 VIRDIM---QAEAAAKAEAAAGAGKEFLAENAKRDGITTLASGLQFEVLTAGEGAKPTRE 120 +D+M AE KAE G FL+ N + GI L SGLQ++++ AG GAKP + Sbjct: 85 FQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPSGLQYKIIDAGTGAKPGKS 144 Query: 121 SNVRTHYHGTLIDGTVFDSSYERGQPAEFPVGGVIAGWTEALQLMNAGSKWRLYVPSELA 180 V Y GTLIDGTVFDS+ + G+PA F V VI GWTEALQLM AGS W ++VP++LA Sbjct: 145 DTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAGSTWEVFVPADLA 204 Query: 181 YGAQGVGS-IPPHSVLVFDVELLDV 204 YG + VG I P+ L+F + L+ V Sbjct: 205 YGPRSVGGPIGPNETLIFKIHLISV 229
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.4 bits (66), Expect = 0.023 Identities = 34/171 (19%), Positives = 59/171 (34%), Gaps = 38/171 (22%) Query: 245 VDIAPLDESSPADAAEVIVNELT-----RFSPSLAERERWLVLNKSDMVMDDERDERVQE 299 V I S AD AE E+T R SL +R+ + + V D E E+V + Sbjct: 39 VQIVSGTLQSIADMAE----EVTFVFSERKELSLDKRK---LSDSQARVSDVE--EQVNQ 89 Query: 300 VIDR---LEWEGPVYVISAISKQGTDKLSHDLMRYLE----DRA----------DRLAND 342 + + LE + V + ++ + L YLE + + D L Sbjct: 90 YLSKVPELEQKQNVSELLSLLSNSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGR 149 Query: 343 PAYAEELADLDQRIED-------EARAQLQALDDARTLRRTGVKSVHDIGD 386 P A ++Q + + +A ++GV + + D Sbjct: 150 PELAHLSHLVEQALVSMAEEQGETIVLGARITPEAYRESQSGVNPLQPLRD 200
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 43.3 bits (102), Expect = 9e-07 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 19/147 (12%) Query: 124 TLRTLVDLGV---------VPVINENDTVVTDEIRFGDNDTLAALVANLVEADLLVILTD 174 T++ LV+ GV VPVI E+ + E D D +A V AD+ +ILTD Sbjct: 178 TIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTD 236 Query: 175 RDGMFDADPRNNPEAQLIYEARADDPSLDAVAGGTGGALGRGGMQTKLRAARLAARSGAH 234 +G + Q + E + ++ G G M K+ AA G Sbjct: 237 VNGAALY--YGTEKEQWLREVKVEELRKYYEEGH----FKAGSMGPKVLAAIRFIEWGGE 290 Query: 235 TIIIGGRIERVLDRLKAGERLGTLLSP 261 II +E+ ++ L G+ GT + P Sbjct: 291 RAII-AHLEKAVEAL-EGKT-GTQVLP 314
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 38.9 bits (90), Expect = 9e-05 Identities = 45/254 (17%), Positives = 89/254 (35%), Gaps = 27/254 (10%) Query: 465 AIDLTHIDPPALQALADRAALRDQKERLEKELK--QLKTQQAVAADRSASKAQTETLYQE 522 A +L H + A+QA +R L +E+ KE + + Q+A + + + ET Sbjct: 112 ATELAHANNAAMQAEDERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAET---- 167 Query: 523 VLDAQKALEDFRRSQTLAAEEPEKLEQLSQ-LEAAQDELKRSSDAFTERVQQLSAKLQLV 581 K E + +EE + +E + L AAQ E+ + +LS+ + Sbjct: 168 -ERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHAR 226 Query: 582 GRQLGDLESKQRTLEDALRRRQLLPADLPYGTPFMEAIDDSMDNLLPLLNDYQDSWQGLQ 641 ++ L K+ L A + + L D+ + L P ND + + Sbjct: 227 DAEMKTLAGKRNELAQASAKYKEL--------------DELVKKLSPRANDPLQNRPFFE 272 Query: 642 RVDNQIEALYAQVRLKGVAKFDSEDDMERRLQLLVNAYAHRTDEALTLAKARRAAVTDIA 701 ++ A + K E R+ + ++ R A + + Sbjct: 273 ATRRRVGAGKIREE-----KQKQVTASETRINRINADITQIQKAISQVSNNRNAGIARVH 327 Query: 702 RTLRNIRSDYDSLE 715 N++ ++L Sbjct: 328 EAEENLKKAQNNLL 341
>PF01540#Adhesin lipoprotein Length = 475 Score = 33.9 bits (77), Expect = 0.002 Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 14/112 (12%) Query: 533 AVKNQASEQQRALPEVDRQLRAVQEALDKHARHLRGL----QALSDQLSVNIARMEGSKK 588 AV+N SEQQ + + ++++ + + A+ L L Q+ +D +++ I ++EG K Sbjct: 98 AVENAKSEQQ-KVDQANKKIADENLKIKEGAKELLKLSEKIQSFADTIALTITKLEGKKF 156 Query: 589 MAQHFEQRVDQSLSRALQACTDELDKGQCATDKF--LGLMQAHLLISEAEKF 638 ++D++ + L + + L+K F + ++ L+SE E F Sbjct: 157 -------QIDETFKKQLISTIELLNKKSAEVKTFATVNTIKKDFLLSELESF 201
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.007 Identities = 35/223 (15%), Positives = 65/223 (29%), Gaps = 22/223 (9%) Query: 179 AMGAAADSKLDQYQQQQQSQWQAVSHQTISIQTELEALAQGLETAEGRRVNAEDQLQRWA 238 A+GA AD+ Q Q Q + L + +E+++ R Sbjct: 129 ALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLT 188 Query: 239 QTNQEDVSQLAQQLASLISAQQQGQAELHETMCMLGEAAAGKFEGQQQRLASL------- 291 +E S Q + +AE T+ ++ RL Sbjct: 189 SLIKEQFSTWQNQKYQKELNLDKKRAER-LTVLARINRYENLSRVEKSRLDDFSSLLHKQ 247 Query: 292 ------FMAQQQAQIELHATIRTLSEVTAGRLDAHQQQMQKHWLTVHGSAQQRLGRSLGS 345 + Q+ +E +R V +L+ + ++ Q Sbjct: 248 AIAKHAVLEQENKYVEAVNELR----VYKSQLEQIESEILSAKEEY----QLVTQLFKNE 299 Query: 346 LLEQLRELDKESVSRLEKLTLLTADHLRSAVHKEVSALGQQLQ 388 +L++LR+ +L S + VS QQL+ Sbjct: 300 ILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLK 342
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 33.7 bits (77), Expect = 0.001 Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 1/114 (0%) Query: 411 LQQAIQRYPDDLNLLYTRAMLAEKRDDLAQMEKDLRAIIAREPENAMALNALGYTLADRT 470 + + D L LY+ A + K +A+ + ++ LG Sbjct: 25 IAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACR-QAM 83 Query: 471 TRYTEAKALIDKAHQLTPDDPAVLDSLGWVSYRLGNLDAAETYLRQAFASFPDH 524 +Y A + +P + G L AE+ L A D Sbjct: 84 GQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADK 137 Score = 29.1 bits (65), Expect = 0.031 Identities = 15/63 (23%), Positives = 24/63 (38%) Query: 283 PDDDELRYSLALVCLENKDWDEAEGYLQELIERESNVDAAHLNLGRIREERHDPAGALRE 342 D E YSLA ++ +++A Q L + L LG R+ A+ Sbjct: 33 SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 92 Query: 343 YAL 345 Y+ Sbjct: 93 YSY 95
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 577 bits (1489), Expect = 0.0 Identities = 215/566 (37%), Positives = 332/566 (58%), Gaps = 14/566 (2%) Query: 399 RIQGVGAAPGIASGPAHVCVEREFD-YPLRGESCAQERQKLRAAIASVNSELQALVLRSD 457 +I G+ A+ G+A A + +E D + E +KL AA+ EL+A+ +++ Sbjct: 4 KITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTE 63 Query: 458 KAIGE----IFVTHQEMLADPALTDDIEQRL-AQGESAAAAWMAVIEAAARQQESLHDAL 512 ++G IF H +L DP L D I+ ++ + +A A V + ES+ + Sbjct: 64 ASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEY 123 Query: 513 LAERAADLRDIGRRVLAQLCGVQAQVEPE--QPYVLVMTEVGPSDVARLDPNRVAGIVTA 570 + ERAAD+RD+ +RVL L GV+ + V++ ++ PSD A+L+ V G T Sbjct: 124 MKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATD 183 Query: 571 QGGATAHSAIVARALGIPAVVGAGASILLLESGTPLLLDGQRGVVSVAPPVDELQQALAE 630 GG T+HSAI++R+L IPAVVG ++ G +++DG G+V V P +E++ + Sbjct: 184 IGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEK 243 Query: 631 RDLREQRLQAAWANRFEPAVTRDGHAVEVFANIGDSNGIAKVVEQGAEGVGLLRTELIFM 690 R E++ Q EP+ T+DG VE+ ANIG + V+ G EG+GL RTE ++M Sbjct: 244 RAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYM 303 Query: 691 AHPQAPDVATQEAEYRRVLDGLGGRPLVVRTLDVGGDKPLPYWPIAAEENPFLGVRGVRL 750 Q P Q Y+ V+ + G+P+V+RTLD+GGDK L Y + E NPFLG R +RL Sbjct: 304 DRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAIRL 363 Query: 751 TLQRPQIMEDQLRALLRAADQRPLRIMFPMVGQVHEWREARAMVERLRAEI------PVA 804 L++ I QLRALLRA+ L++MFPM+ + E R+A+A+++ + ++ Sbjct: 364 CLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSD 423 Query: 805 DLQLGIMVEVPSAALLAAQLAREVDFFSIGTNDLTQYTLAIDRGHPSLSAQADGLHPAVL 864 +++GIMVE+PS A+ A A+EVDFFSIGTNDL QYT+A DR + +S HPA+L Sbjct: 424 SIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAIL 483 Query: 865 TLIDMTVRAAHAQGKWVGVCGELAADPQAVAVLLGLDVDELSVSARSIAEVKALVRQADH 924 L+DM ++AAH++GKWVG+CGE+A D A+ +LLGL +DE S+SA SI ++ + + Sbjct: 484 RLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSK 543 Query: 925 QTARALAREALQQDSAAAVRALVERY 950 + + A++AL D+A V LV++ Sbjct: 544 EELKPFAQKALMLDTAEEVEQLVKKT 569
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 58.7 bits (142), Expect = 7e-12 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 169 AANILVVDDSQVALQQSVHTLRNLGIECHTARSAKDAINVLLELQGTAQEINIIVSDIEM 228 A ILV DD L G + +A + A + +++V+D+ M Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI-----AAGDGDLVVTDVVM 57 Query: 229 SEMDGYAFTRTLRETPDFQHLYVLLHTSLDSAMSSEKATQAGANAILTK 277 + + + +++ L VL+ ++ ++ M++ KA++ GA L K Sbjct: 58 PDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 261 bits (668), Expect = 3e-85 Identities = 92/426 (21%), Positives = 174/426 (40%), Gaps = 58/426 (13%) Query: 21 RAGRIITLCALMLAAFLAWAAWFEVTEVSTGTGKVIPSSREQVIQSFEGGIVAQMSVAEG 80 I L + +V V+T GK+ S R + I+ E IV ++ V EG Sbjct: 59 LVAYFIMGF---LVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEG 115 Query: 81 DLVERGQVLAQLDPTKTASSVGESEAKYRAAKASQARLQAEVTG---------KPLTFPE 131 + V +G VL +L + ++++ A+ Q R Q K P Sbjct: 116 ESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPY 175 Query: 132 SLRDSPDLIDAETALYQTRRR---------------------GLEQTLAGIQDSLQLVRS 170 S + + T+L + + + + ++ ++ +S Sbjct: 176 FQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Query: 171 ELQITENLAKMGASSRVEVI---------------------RLNRQRSELELKANEARSD 209 L +L A ++ V+ ++ + + + Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 210 YLVRAREELAKASAEADSLSEVIRGRSDSLTRLTLRSPVRGIVKDIEVNTLGGVVQPGGQ 269 + ++L + + L+ + + +R+PV V+ ++V+T GGVV Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355 Query: 270 VMKIVPMDERLLIETRIAPRDIAFIHPGQAAKVKISAYDYSVYGGLDGKVVGISPDTLQD 329 +M IVP D+ L + + +DI FI+ GQ A +K+ A+ Y+ YG L GKV I+ D ++D Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIED 415 Query: 330 EVKPEIYYYRVFIRTEQDSLQNKAGKHFAIVPGMIATVDIRTGEKTILDYLIKPL-NRAK 388 + + + + V I E++ L + K+ + GM T +I+TG ++++ YL+ PL Sbjct: 416 Q-RLGLVFN-VIISIEENCL-STGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVT 472 Query: 389 EALRER 394 E+LRER Sbjct: 473 ESLRER 478
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 50.0 bits (119), Expect = 3e-07 Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 24/126 (19%) Query: 5299 DVIAGTDGNDHLDGSQG--------GHITLQGGAGDDTLVVVDQNFAS--VDGGTGTDTL 5348 D ++G +G+D L G G G+ L GG GDD V + A + GG G D L Sbjct: 765 DTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKL 824 Query: 5349 LWGGGDASIDLGNLAGRVHDIEIIDLNDTSSVALTLNLADVVAITETGTDTLVIKGDDKD 5408 G +D G ++ ND ++ G + G +D Sbjct: 825 YGSEGADLLDGGEGD---DLLKGGYGNDI-----------YRYLSGYGHHIIDDDGGKED 870 Query: 5409 SVHMTD 5414 + + D Sbjct: 871 KLSLAD 876 Score = 40.7 bits (95), Expect = 2e-04 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 11/62 (17%) Query: 5299 DVIAGTDGNDHLDGSQGGHITLQGGAGDDTLVVVDQNFASVDGGTGTDTLLWGGGDASID 5358 D+I G DGND L G +G L GG GDD L GG G D L+ G+ ++ Sbjct: 747 DLIEGNDGNDRLYGDKGNDT-LSGGNGDDQL----------YGGDGNDKLIGVAGNNYLN 795 Query: 5359 LG 5360 G Sbjct: 796 GG 797 Score = 34.2 bits (78), Expect = 0.022 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 11/107 (10%) Query: 5269 DNAAGLVTTTSLLADSGDEAVALASLAAATDVIAGTDGNDHLDGSQGGHITLQGGAGDDT 5328 D G+ L GD+ + + A +V+ G GND L GS+G + L GG GDD Sbjct: 783 DKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADL-LDGGEGDDL 841 Query: 5329 LVVVDQNFASVDGGTGTDTLLWGGGDASIDLGNLAGRVHDIEIIDLN 5375 L GG G D + G + + G+ + + D++ Sbjct: 842 L----------KGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADID 878
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 382 bits (983), Expect = e-130 Identities = 140/369 (37%), Positives = 198/369 (53%), Gaps = 15/369 (4%) Query: 164 ERIEHLALRAEDEHHRAEIYRQASGQD-KELIGQSPAHKRLVEEIRLVGGSDLTVLITGE 222 + + RA E R + QD L+G+S A + + + + +DLT++ITGE Sbjct: 109 TELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGE 168 Query: 223 TGVGKELVAQALHQASSRADKPLISLNCAALPDTLVESELFGHVRGAFTGAHGERRGKFE 282 +G GKELVA+ALH R + P +++N AA+P L+ESELFGH +GAFTGA G+FE Sbjct: 169 SGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFE 228 Query: 283 LANGGTLFLDEVGELPLTVQAKLLRVLQSGQLQRLGSDREHRVDVRLIAATNRDLAAEVR 342 A GGTLFLDE+G++P+ Q +LLRVLQ G+ +G R DVR++AATN+DL + Sbjct: 229 QAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSIN 288 Query: 343 NGNFRADFYHRLSVYPLHVPPLRERGRDVLLLAGYFLEQNRSRLGLNSLRLSNEAQAALI 402 G FR D Y+RL+V PL +PPLR+R D+ L +F++Q + GL+ R EA + Sbjct: 289 QGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMK 347 Query: 403 AYDWPGNVRELEHLIGRSALKALGQHPDRPRILTL-------------EAIDLDLRVSPA 449 A+ WPGNVRELE+L+ R R I A L +S A Sbjct: 348 AHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQA 407 Query: 450 MPGSPPSHAAPSPAATLPEGGLREAVDIYQRQVIEACLQKHQDNWAAAARELGLDRANLS 509 + + + A A P G + + +I A L + N AA LGL+R L Sbjct: 408 VEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLR 467 Query: 510 RLARRLGLR 518 + R LG+ Sbjct: 468 KKIRELGVS 476
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 106 bits (266), Expect = 3e-27 Identities = 75/364 (20%), Positives = 131/364 (35%), Gaps = 58/364 (15%) Query: 22 VGIDLGTTNSLVAALRSGRSEPLPDAQGNVILPSAVRYLEGRNEVGQAARDAASSDPLNT 81 + IDLGT N+L+ G + PS V A + + Sbjct: 13 LSIDLGTANTLIYVKGQGIV---------LNEPSVV------------AIRQDRAGSPKS 51 Query: 82 VLSV----KRLMGRGLADVKQLGEQLPYRFVGGESHMPFIDTVQGPKSPVEVSADILK-V 136 V +V K+++GR ++ + P D V V+ +L+ Sbjct: 52 VAAVGHDAKQMLGRTPGNIAAI--------------RPMKDGVIAD---FFVTEKMLQHF 94 Query: 137 LRERAEATLGGELVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLD 196 +++ + ++ VP +R+A +++A+ AG + L+ EP AAA+ GL Sbjct: 95 IKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLP 154 Query: 197 QNAEGVVAIYDLGGGTFDISILRLTAGVFEVLATGGDTALGGDDFDHAIAGWIIEEAGLS 256 + + D+GGGT +++++ L V +GGD FD AI ++ G Sbjct: 155 VSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYGSL 209 Query: 257 SDLDPATQRALLQTACAAKEALTDTDVVS----VSHGAWQGEL-SRAAFEAMIEPLVARS 311 + +R + A V L S EA+ EPL Sbjct: 210 IG-EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTG-I 267 Query: 312 LKACRRAVRDSGVELEEVSA---VVMVGGSTRVPRVREAVGALFGRTPLTSIDPDQVVAI 368 + A A+ EL + +V+ GG + + + G + + DP VA Sbjct: 268 VSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVAR 327 Query: 369 GAAI 372 G Sbjct: 328 GGGK 331
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.3 bits (73), Expect = 0.003 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 9/114 (7%) Query: 143 DLAKIALEHVEVESADGTTQIHPLDEPEDQAVSVGQQAESAPLALE------QGATEQPA 196 ++A+ E E ++ + T + +++ E V + E + + Q T QP Sbjct: 1084 EVAQSGSETKETQTTE-TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142 Query: 197 A--AAEQAPTSAAPAAAAVPAPAAGQQAPAQPAPAAAPAPVAPVTPAPAAVAPA 248 A A E PT + A + PA+ + PV T + Sbjct: 1143 AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVV 1196
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 73.9 bits (181), Expect = 3e-20 Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 1/96 (1%) Query: 1 MFEVGFSELLLVGVVALLVLGPERLPVAARTLGRGLGQARRAMHALRTQVEREIELPHLD 60 MF++GFSELLLV ++ L+VLGP+RLPVA +T+ + R ++ ++ +E++L Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ 60 Query: 61 SAPLQRLEQEIRQGISLNTEPANDAATVTLPKENAS 96 + L+++E+ ++ + + D S Sbjct: 61 DS-LKKVEKASLTNLTPELKASMDELRQAAESMKRS 95
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 32.7 bits (74), Expect = 5e-05 Identities = 12/45 (26%), Positives = 20/45 (44%) Query: 1 MGGIGIWQLVIVLLIVFLLFGTKRLKGLGSDVGEAIQGFRKSMGG 45 M IG +L++V +I ++ G +RL V I+ R Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATT 45
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 474 bits (1222), Expect = e-163 Identities = 194/629 (30%), Positives = 312/629 (49%), Gaps = 97/629 (15%) Query: 10 ALSVALSMACAEEPVFDDNGTPMYEVNFVDTELGEFIDSVSRITGTTFIVDPRVKGKVTV 69 S +L++ +F + +F T++ EFI++VS+ T I+DP V+G +TV Sbjct: 7 IRSFSLTLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITV 66 Query: 70 RTVDLHDADAIYDIFLAQLRAQGYATVDLPNGSVKIVPDQAARLEPVPV----------- 118 R+ D+ + + Y FL+ L G+A +++ NG +K+V + A+ VPV Sbjct: 67 RSYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDE 126 Query: 119 ---------------------EAGGQQGEGS----DSVATRVFNVRNAASEQVLGILKPL 153 + G GS + + R A +++L I++ + Sbjct: 127 VVTRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERV 186 Query: 154 IDP--RVGVITPYPAAHQL-------------------------VVTDWRSNL------- 179 + R V P A VV D R+N Sbjct: 187 DNAGDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEP 246 Query: 180 ---ERIASLLRQLDRPEEAQGSGSTQVIYLRHANAGEVVKVLRGLSQEGAVPAEGPGEGE 236 +RI ++++QLDR + QG+ T+VIYL++A A ++V+VL G+S + Sbjct: 247 NSRQRIIAMIKQLDRQQATQGN--TKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVA 304 Query: 237 SKDRPVMVASAGPSIRLEYEEGTNAVVMVGPDSELAAYRAIVEQLDIRRAQVVVEAIIAE 296 + D+ +++ A TNA+++ + ++ QLDIRR QV+VEAIIAE Sbjct: 305 ALDKNIII-KAHGQ--------TNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAE 355 Query: 297 VSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNIANIAGAAASGDNEALGDLLSTTAGAT 356 V D+ LG+QW AG+ F ++G+ I+ A + + G + S+ A A Sbjct: 356 VQDADGLNLGIQWANK----NAGMTQFTNSGLPISTAIAGANQYNKD--GTVSSSLASAL 409 Query: 357 AGIGHFGGGF---NFAMLVNALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVT 413 + GF N+AML+ AL + ++L+TP+++TLDN EA+ VGQEVP +TGS T Sbjct: 410 SSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQT 469 Query: 414 QNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIADSSAASD----VITNKR 469 + N + T+ERK VG+KL++KPQIN +SV L+I QEVSS+AD+++++ N R Sbjct: 470 TSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTR 529 Query: 470 EIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYLGRLFRSDASKNTKQNLMVFI 529 + V+V V++GGL+ +S + +VPLLGDIP +G LFRS + K +K+NLM+FI Sbjct: 530 TVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFI 589 Query: 530 RPRILRDGPSLAGLSEDKYRTLQQTTPLQ 558 RP ++RD S +Y Q Sbjct: 590 RPTVIRDRDEYRQASSGQYTAFNDAQSKQ 618
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 452 bits (1165), Expect = e-161 Identities = 175/404 (43%), Positives = 249/404 (61%), Gaps = 8/404 (1%) Query: 1 MPTYRYQAVDLAGKSHKASLQADNERHARQLLREQGLF--------ARQLQRHEAGVQRP 52 M Y YQA+D GK + + +AD+ R ARQLLRE+GL Q + G+ Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 53 RRQRLSRAQLCELTRQLATLIGAGIPLVDALATLERQLRQPALHSVLVALRGSLAEGLGL 112 R+ RLS + L LTRQLATL+ A +PL +AL + +Q +P L ++ A+R + EG L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 113 ARSLARQGAPFTGLYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALIYPTVLM 172 A ++ F LYCA+V AGE SG L VL RLAD+ EQ Q+ + + + A+IYP VL Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 173 GVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLVLAGPWMVGLALMLAVL 232 V++AVV L++ VVPK+ EQF H Q+LPL T +L+G+S + GPWM+ L + Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 233 GGWLLRKPHWCLRRDQLLLRLPRIGGLVQVLESARLARSLAILSGSGVALLEALHVATDT 292 +LR+ + + LL LP IG + + L +AR AR+L+IL+ S V LL+A+ ++ D Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 293 IGNRRIRLAMEQVRQQVQGGTSLHRALDACQQFPPLLVNMVGSGEASGTLADMLERVADD 352 + N R + V+ G SLH+AL+ FPP++ +M+ SGE SG L MLER AD+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 353 QERGFARQVDTAMALFEPLMILVMGAVVLFIVLAVLLPIMQLNQ 396 Q+R F+ Q+ A+ LFEPL+++ M AVVLFIVLA+L PI+QLN Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNT 404
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 218 bits (558), Expect = 7e-77 Identities = 71/141 (50%), Positives = 98/141 (69%), Gaps = 3/141 (2%) Query: 4 RRNRQRGFTLMEIMVVIFIIGLLIAVVAPSVLGNQDKAMKQKVMADLATLEQALDMYRLD 63 ++QRGFTL+EIMVVI IIG+L ++V P+++GN++KA KQK ++D+ LE ALDMY+LD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 64 NLRFPSSEQGLAALVKKPAQEPLPRAWRSDGYVRRLPQDPWGTPYQYRMPGEHGRVDVYS 123 N +P++ QGL +LV+ P PL + +GY++RLP DPWG Y PGEHG D+ S Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLS 122 Query: 124 LGADGQPGGEGQDADLGNWAL 144 G DG+ G E D+ NW L Sbjct: 123 AGPDGEMGTED---DITNWGL 140
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 42.2 bits (99), Expect = 9e-08 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 4 QRGFSLIELLVVLAIAGLMTGLVVAGFGSGQVGVE-QALQRLVAETRSQAALARHAGQLR 62 QRGF+L+E++++L + G+ G+V+ F + + Q L R A+ R GQ Sbjct: 3 QRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFF 62 Query: 63 GLRWNGQRPEFVRREGNAWVVEAVALGDW 91 G+ + R +F+ E A A W Sbjct: 63 GVSVHPDRWQFLVLEARDGADPAPADDGW 91
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 29.5 bits (66), Expect = 0.002 Identities = 12/23 (52%), Positives = 16/23 (69%) Query: 4 RQCGFTLLEVTVALAIAAVLAVI 26 +Q GFTLLE+ V + I VLA + Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASL 28
>PF05860#haemagglutination activity domain. Length = 117 Score = 85.2 bits (211), Expect = 1e-21 Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 23/136 (16%) Query: 31 AQNGLDATAGPAGTPIIHNGHGVPVIDIVPPNASGLSHNQFIDYNVGTPGLVLNNATEAG 90 AQ D T P + I G +I+ S L H+ F +++V T G N Sbjct: 1 AQITPDTTL-PINSNITTEG-NTRIIERGTQAGSNLFHS-FQEFSVPTSGTAFFN----- 52 Query: 91 RSQLAGALAANPQFQGQAASTILNEVVSRNASLIEGPQEIFGRPADYILANPNGITLNGG 150 I++ V + S I+G A+ L NPNGI Sbjct: 53 --------------NPTNIQNIISRVTGGSVSNIDGLIRANAT-ANLFLINPNGIIFGQN 97 Query: 151 SFINTTRAGFVVGTPA 166 + ++ + Sbjct: 98 ARLDIGGSFVGSTANR 113
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.6 bits (82), Expect = 3e-04 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 24/155 (15%) Query: 286 LLCFAVVFMALATPLSAWLSDRYGRKPVLIVGGLLAIASGFTMEPLLTSGSTTGVALFLA 345 L +A++ A A P+ LSDR+GR+PVL+V A M +T L Sbjct: 49 LALYALMQFACA-PVLGALSDRFGRRPVLLVSLAGAAVDYAIM-------ATAPFLWVLY 100 Query: 346 IELFLMGVTFAPM---GALLPELFPTH--VRYTG-ASAAYNLGGIVGASAAPFFAQKLVS 399 I + G+T A GA + ++ R+ G SA + G + G Sbjct: 101 IGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL------- 153 Query: 400 MGGLSWVGGYVSAAAVISLIAVLC---LKETRNTE 431 MGG S + +AAA+ L + L E+ E Sbjct: 154 MGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGE 188
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 2e-04 Identities = 6/26 (23%), Positives = 17/26 (65%) Query: 236 RRLLVREGQQVKAGQSIAEMGSTGTD 261 + ++V+EG+ V+ G + ++ + G + Sbjct: 108 KEIIVKEGESVRKGDVLLKLTALGAE 133
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 36.5 bits (84), Expect = 2e-04 Identities = 11/37 (29%), Positives = 13/37 (35%) Query: 624 PQASEPAPDEQVEDDPSPPPAPAPARRNDPPPPKPAP 660 P EP Q +P P P P +PP P Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVV 88 Score = 35.7 bits (82), Expect = 4e-04 Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 3/59 (5%) Query: 611 ASLFDQGEQQPARPQASEPAPDEQVEDDPSPPPAPAPARRNDPPP---PKPAPPAALQP 666 + + + P+ E P AP + P P PKP QP Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 110 Score = 35.3 bits (81), Expect = 5e-04 Identities = 12/51 (23%), Positives = 16/51 (31%) Query: 618 EQQPARPQASEPAPDEQVEDDPSPPPAPAPARRNDPPPPKPAPPAALQPMQ 668 Q P P+ + E P PP P PKP P + + Sbjct: 58 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQE 108
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.9 bits (77), Expect = 0.005 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 7/111 (6%) Query: 949 VRPQVQPEPVPEPEPAPKEPPKLGGTVRAAAAPAVSYDPLGPEAKDPYLLPALTANKVRF 1008 V+PQ +P +P KEP T PA + P + V Sbjct: 1139 VQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ-------PVTESTTVNT 1191 Query: 1009 PGAPLVRPTVQPESVPEPEPGPLLQEPPRLGDTVRALAAPPPVEPAASYDP 1059 + + P + +P P+ + P VEPA + Sbjct: 1192 GNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 47.6 bits (113), Expect = 5e-08 Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 3/133 (2%) Query: 56 LVWGLAQPFAGALADRMGAARVVIIGGILYAIGLVFMGMADSAWSLSLSAGLLIGIGLSG 115 L + + G L+D++G R+++ G I+ G V + S +SL + A + G G + Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG-AA 118 Query: 116 TSFSVILGVVGRAVPAEKRSMAMGIASAAGSFGQFAMLPGTLGLI-QWLGWSAALLVLGL 174 ++++ VV R +P E R A G+ + + G+ + P G+I ++ WS LL+ + Sbjct: 119 AFPALVMVVVARYIPKENRGKAFGLIGSIVAMGE-GVGPAIGGMIAHYIHWSYLLLIPMI 177 Query: 175 MVAFIVPFVGLLR 187 + + + LL+ Sbjct: 178 TIITVPFLMKLLK 190 Score = 30.2 bits (68), Expect = 0.013 Identities = 19/138 (13%), Positives = 46/138 (33%), Gaps = 12/138 (8%) Query: 12 LVGAALILALSLGVRHGFGLFLAPMSADFGWGREVFAFAIALQNLVWGLAQPFAGALADR 71 + G ++ + H V F + +++G G L DR Sbjct: 272 VAGFVSMVPYMMKDVHQLSTAEIG---------SVIIFPGTMSVIIFG---YIGGILVDR 319 Query: 72 MGAARVVIIGGILYAIGLVFMGMADSAWSLSLSAGLLIGIGLSGTSFSVILGVVGRAVPA 131 G V+ IG ++ + S ++ ++ +G + +VI +V ++ Sbjct: 320 RGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQ 379 Query: 132 EKRSMAMGIASAAGSFGQ 149 ++ M + + + Sbjct: 380 QEAGAGMSLLNFTSFLSE 397
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 75.9 bits (186), Expect = 2e-18 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 1/184 (0%) Query: 5 IMITGAGSGLGREIALRWAREGWRLALADVNESGLRGTLERVREAGGEGFVQRCDVRDYS 64 ITGA G+G +A A +G +A D N L + ++ DVRD + Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 65 QLTALAQACTEQFGGIDVIVNNAGVASGGFFAELSLEDWDWQIAVNLMGVVKGCKAFLP- 123 + + + G ID++VN AGV G LS E+W+ +VN GV ++ Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 124 LLERSKGRIINVASMAALMQGPGMSNYNVAKAGVLALSESLLVELRQLEVAVHVVCPSFF 183 +++R G I+ V S A + M+ Y +KA + ++ L +EL + + ++V P Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 184 QTNL 187 +T++ Sbjct: 191 ETDM 194
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.6 bits (74), Expect = 0.002 Identities = 15/53 (28%), Positives = 18/53 (33%) Query: 194 LAVDPHCTRPGVGEVLVRHLIEHFMSRGLAYLDLSVLHDNRQAKRLYQKLGFR 246 +AV + GVG L+ IE L L N A Y K F Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 89.0 bits (220), Expect = 2e-23 Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 5/203 (2%) Query: 11 LQGRVILVTGAGRGIGAAAAKAYAALGATVLLLGKTEANLNEVYDQIEAAGHPQPVVIPF 70 ++G++ +TGA +GIG A A+ A+ GA + + L +V ++A F Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE---AF 62 Query: 71 NLETALPHQYDELAVMIEDQFGRLDGLLNNASIIGPRTPLEQLSGDNFMRVMHINVDATF 130 + DE+ IE + G +D L+N A ++ P + LS + + +N F Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTGVF 121 Query: 131 MLTSTLLPLLKLSEDASVVFTSSSVGRKGRAYWGAYGVSKFATEGLMQTLADELEGVAPV 190 + ++ + S+V S+ R AY SK A + L EL + Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN-I 180 Query: 191 RSNSINPGATRTAMRAQAYPSEN 213 R N ++PG+T T M+ + EN Sbjct: 181 RCNIVSPGSTETDMQWSLWADEN 203
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 114 bits (287), Expect = 4e-37 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 2 TKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRVG 61 K +LI + V L+ KD A+ + +S LA G+++++ GFG+F + RA R G Sbjct: 3 NKQDLIAK-VAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGQSVSLEGKFVPHFKPGKELRDRV 90 RNP+TG+ + ++ VP FK GK L+D V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 67.9 bits (166), Expect = 7e-15 Identities = 50/290 (17%), Positives = 98/290 (33%), Gaps = 47/290 (16%) Query: 6 KLLITGGTGSFGNAVLKRFLDT--DIAEIRIFSR--DEKKQDDMRKRYASSKLKFYIGDV 61 K L+TG G G V KR L+ + I + D + + A +F+ D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 62 RDYQSV--LNATRGVDYIFHAAALKQVPSCEFHPMEAVKTNVIGTENLLEAAIQNEVRRV 119 D + + L A+ + +F + V +P +N+ G N+LE N+++ + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 120 VCLST---------------DKAVYPINAMGISKAMMEKVMVAKSRNVDEKKTVICGTRY 164 + S+ D +P++ +K E + S T G R+ Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPAT---GLRF 178 Query: 165 GNVMASRGS---VIPLFIEQIRAGQALTL-TDPNMTRFMMTLSDAVDLVLYAFE------ 214 V G + F + + G+++ + M R + D + ++ + Sbjct: 179 FTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHAD 238 Query: 215 ---HGNNGDLFVQKAP----------AATIEVLAKALTELVGKPAHPINV 251 G AP + +AL + +G A + Sbjct: 239 TQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 70.6 bits (173), Expect = 1e-15 Identities = 59/259 (22%), Positives = 95/259 (36%), Gaps = 77/259 (29%) Query: 1 MKVLVTGANGFVGRNLLVHLGERKDIEVVLFT----------REHALESLAE-------- 42 MK LVTGA GF+G ++ L E +VV ++ LE LA+ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 43 ------------KVRDVDFVFHL---AGINR-PKDPEEFK----VGNADLTLELCRAIKA 82 + VF + ++P + G ++ LE CR K Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNI-LEGCRHNKI 118 Query: 83 SGRQIPVLYTSSSQ----------AELDNA------YGASKRGAEEALAELQTQHGSAVH 126 +LY SSS + D+ Y A+K+ E + H Sbjct: 119 QH----LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANEL-------MAHTYSH 167 Query: 127 LFRLP-------NVFGKWARPNYNSAVATFCHNIVHGLDITI-NDPQARINLVYIDDVVK 178 L+ LP V+G W RP+ A+ F ++ G I + N + + + YIDD+ + Sbjct: 168 LYGLPATGLRFFTVYGPWGRPDM--ALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAE 225 Query: 179 AFVQVLDGVKSGTPFAQVE 197 A +++ D + VE Sbjct: 226 AIIRLQDVIPHADTQWTVE 244
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 82.9 bits (205), Expect = 3e-20 Identities = 70/347 (20%), Positives = 126/347 (36%), Gaps = 51/347 (14%) Query: 4 RVFLTGASGFVGSAVLHRLLADGMPTVATVRG-------SSLSLPPA---VQAVPFDSFE 53 + +TGA+GF+G V RLL G V G +SL A + A P F Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGH----QVVGIDNLNDYYDVSLKQARLELLAQPGFQFH 57 Query: 54 EAG-QWGEALRGC------DTVIHCAARVHVMNDTEADPLSAFRKVNVQGTMNLARQAVA 106 + E + + V R+ V E +P A+ N+ G +N+ Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLE-NP-HAYADSNLTGFLNILEGCRH 115 Query: 107 AGVKRFVFISSIKVNGEGTAPGQPYTAHDRP-QPQDPYGISKMEAEAQLLALAQASGLEV 165 ++ ++ SS V G P++ D P Y +K E + GL Sbjct: 116 NKIQHLLYASSSSVYGLNRKM--PFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPA 173 Query: 166 VIIRPVLVYGPGVKAN------FQAMMRWLNKGVPLP-FGAIDNRRSLVALDNLVDLIVT 218 +R VYGP + + +AM+ +G + + +R +D++ + I+ Sbjct: 174 TGLRFFTVYGPWGRPDMALFKFTKAML----EGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229 Query: 219 CTDHPAAVNQVFLVSDGEDLSTTALLRRMAQALGAPARLLPVPGWVLSGGANLLGRTALS 278 D + + V G ++ A R +P L+ + + LG A Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMD----YIQALEDALGIEA-- 283 Query: 279 KRLCGSLQ--------VDIEKTRKVLGWRPPVSVDAALRATAQHFQE 317 K+ LQ D + +V+G+ P +V ++ +++ Sbjct: 284 KKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 60.6 bits (147), Expect = 6e-12 Identities = 57/314 (18%), Positives = 113/314 (35%), Gaps = 60/314 (19%) Query: 310 TVLVTGAGGSIGSELCRQILGQAPKYLLLFDHSEFNLYSILSELEQRVSRESLTVSLVPI 369 LVTGA G IG + +++L +A ++ D N Y +S + R+ E L Sbjct: 2 KYLVTGAAGFIGFHVSKRLL-EAGHQVVGID--NLNDYYDVSLKQARL--ELLAQPGFQF 56 Query: 370 L-GSVRNQSQLLDIMKTWRVDTVYHAAAYKHVPMVEHNITEGLMNNVIGTLHTAQAALQA 428 + ++ + D+ + + V+ + V N +N+ G L+ + Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 429 GVANFVLIST---------------DKAVRPTNVMGSTKRLAEMTLQALSREVAPVLFGD 473 + + + S+ D P ++ +TK+ E+ S L+G Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSH-----LYG- 170 Query: 474 SGKVSQVNKTRFTMVRFGNVLGSSGS---VIPLFHKQIKAGGPLTV-THPKITRYFMTIP 529 T +RF V G G + F K + G + V + K+ R F I Sbjct: 171 ---------LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYID 221 Query: 530 EAAQLVIQA----------GSMGKGGD--------VFVLDMGEPVKIVELAEKMIHLSGF 571 + A+ +I+ ++ G V+ + PV++++ + + G Sbjct: 222 DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI 281 Query: 572 SVRSERNPM--GDI 583 + P+ GD+ Sbjct: 282 EAKKNMLPLQPGDV 295
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 183 bits (465), Expect = 3e-57 Identities = 86/353 (24%), Positives = 139/353 (39%), Gaps = 44/353 (12%) Query: 1 MTILVTGGAGFIGANFVLDWLAGSDEPVVNLDKLT--YAGNLQTLR-SLQGDKRHIFVHG 57 M LVTG AGFIG + L + VV +D L Y +L+ R L F Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQ-VVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 58 DIGDSQLVAELLKAHQPRAIVNFAAESHVDRSIHGPQAFIETNVVGTFHLLEAVRAYWGG 117 D+ D + + +L + + V S+ P A+ ++N+ G ++LE R Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN--- 116 Query: 118 LNGPARQAFRFLHVSTDEVYGSLTAGEPAFTETHQY-QPNSPYSASKAASDHLVRSYHHT 176 + L+ S+ VYG + F+ P S Y+A+K A++ + +Y H Sbjct: 117 ------KIQHLLYASSSSVYGL--NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHL 168 Query: 177 YGLPVLTTNCSNNYGPYHFPEKLIPLMIVNALAGKPLPVYGDGQQIRDWLFVKDHCSAIR 236 YGLP YGP+ P+ + L GK + VY G+ RD+ ++ D AI Sbjct: 169 YGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 237 RVMEAGKA------------------GEVYNVGGWNEKPNLEIVNRVCALLDELRPRTDG 278 R+ + VYN+G + ++ + AL D L Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQ---ALEDALGIEAK- 284 Query: 279 KPYAEQITYVTDRPGHDRRYAIDARKLERELGWKPTETFETGIRKTVAWYLDN 331 + +PG + D + L +G+ P T + G++ V WY D Sbjct: 285 ------KNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 44.8 bits (106), Expect = 2e-07 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 23/159 (14%) Query: 1 MKVLLLGRDGQVGWELQRSLAPLG-QVLALN------------ARSQA--------HCGD 39 MK L+ G G +G+ + + L G QV+ ++ AR + H D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 40 LANLHGLAETVRAFAPDVIVNAAAYTAVDKAESDRELAFRVNAEAVDVLARAAADCG-AL 98 LA+ G+ + + + + + AV + + N + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 99 LVHYSTDYVFPGQGTQPWREDDAVG-PLNTYGASKLAGE 136 L++ S+ V+ P+ DD+V P++ Y A+K A E Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE 159
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 86.3 bits (213), Expect = 5e-19 Identities = 84/438 (19%), Positives = 152/438 (34%), Gaps = 34/438 (7%) Query: 204 VKSEAHKPGTIDSLNVDRVRELEKAFESIERTLRESLGSIGTRLADANKKYRSATEQIAQ 263 S + +++V+E FE TL+ + TE+++ Sbjct: 39 EVSAVATRS--QTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSN 96 Query: 264 LKPEAQKA----DALAKQLQVRDADIATLQQANREILDAKAKRV---QELEEIKERLDDA 316 K + +K A ++Q +A A L++A ++ + LE K L Sbjct: 97 AKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAAR 156 Query: 317 NRKYRLATEQLSLLKLE----AQKAEALARQLQDRDAHIIAIEQANREALENSARSIQEL 372 A E + EA L+ R A + + + I+ L Sbjct: 157 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 373 NAELDSLKSQLGEANEKCLATAEQYAQLQQHIAALEEAQVQRVEELDTLNQSLLSLEEQL 432 AE +L ++ + + I LE + L ++L Sbjct: 217 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 276 Query: 433 LATDLQ-------RAAAEELAANETAKIAVLQAQYEALEIQLQQMAELQAKGQADNTALS 485 A + +AA E A+ + VL A ++L L E + + +A++ L Sbjct: 277 TADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLE 336 Query: 486 EAVTGLEKQRNELKQQLEVLSEQLAQAQQINDGHVETITTLRAQQAALQAKLENQRQAAA 545 E E R L++ L+ E Q + + E A + +L+ L+ R+A Sbjct: 337 EQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKK 396 Query: 546 ELQSQAEQANAGHVDTITALRAQQAALQAAIERQKELHTQAEQTNSDHVETITTLRARQA 605 +++ E+AN + L A + KEL + T + E L A Sbjct: 397 QVEKALEEAN--------------SKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAK 442 Query: 606 ALEAELAGQAQTMIELRE 623 AL+ +LA QA+ + +LR Sbjct: 443 ALKEKLAKQAEELAKLRA 460 Score = 58.2 bits (140), Expect = 2e-10 Identities = 85/437 (19%), Positives = 157/437 (35%), Gaps = 32/437 (7%) Query: 384 GEANEKCLATAEQYAQLQQHIAALEEAQVQRVEELDTLNQSLLSLEEQLLATDLQRAAAE 443 G +A + ++E + E +TL L A Sbjct: 32 GLVVNTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELT 91 Query: 444 ELAANETAKIAVLQAQYEALEIQLQQMAELQAKGQADNTALSEAVTGLEKQRNELKQQLE 503 E +N K+ ++Q++ +A + T + + LE Sbjct: 92 EELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAK----IKTLE 147 Query: 504 VLSEQLAQAQQINDGHVETITTLRAQQAALQAKLENQRQAAAELQSQAEQANAGHVDTIT 563 LA + + +E +A LE ++ A Q++ E+A G ++ T Sbjct: 148 AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFST 207 Query: 564 ALRAQQAALQAAIERQKELHTQAEQTNSDHVETITTLRARQAALEAELAGQAQTMIELRE 623 A A+ L+A E+ + T A+ LEAE A EL + Sbjct: 208 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 267 Query: 624 QTELTD---ASRLETISSLQSRIDELDTQIGATVESRDETLEANRDHIDTIANLRELQTA 680 E + I +L++ L+ + A +E + + L ANR + L+ Sbjct: 268 ALEGAMNFSTADSAKIKTLEAEKAALEAEK-ADLEHQSQVLNANR---------QSLRRD 317 Query: 681 METALENQKQALCILQNESSQEVAEKDECIATLRKRQAELEAELESELEYMNELQAQTQR 740 ++ + E +KQ E+ + E+ I+ + L +L++ E +L+A+ Q+ Sbjct: 318 LDASREAKKQL------EAEHQKLEEQNKIS--EASRQSLRRDLDASREAKKQLEAEHQK 369 Query: 741 ADAAQAETIALLKARQAELEADLGNQRQAMKQAYAAQTET---VAALQSRQSELESQLLE 797 + E + +A + L DL R+A KQ A E +AAL+ ELE Sbjct: 370 LE----EQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKL 425 Query: 798 MSETQARAEREHAAQAN 814 + +A + + A+A Sbjct: 426 TEKEKAELQAKLEAEAK 442 Score = 51.6 bits (123), Expect = 3e-08 Identities = 58/353 (16%), Positives = 117/353 (33%), Gaps = 24/353 (6%) Query: 570 AALQAAIERQKELHTQAEQTNSDHV-ETITTLRARQAALEAELAGQAQTMIELREQTELT 628 A L + T+++ + V E L+ + + + L++ + Sbjct: 31 AGLVVNTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDEL 90 Query: 629 DASRLETISSLQSRIDELDTQIGATVESRDETLEANRDHIDTIANLRELQTAMETALENQ 688 E +S+ + ++ + D + E D + TA ++ Sbjct: 91 T----EELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTL 146 Query: 689 KQALCILQNE---SSQEVAEKDECIATLRKRQAELEAELESELEYMNELQAQTQRADA-- 743 + L + + + LEAE + EL+ + A Sbjct: 147 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 206 Query: 744 ----AQAETIALLKARQAELEADLGNQRQAMKQAYAAQTETVAALQSRQSELESQLLEMS 799 A+ +T+ KA A +ADL + A + + L++ ++ LE++ E+ Sbjct: 207 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 266 Query: 800 ETQARAEREHAAQANTINTLVELRNGFEEQVHELTQANA-------RAQEAQAEQATAIE 852 + A A + I TL + E + +L + + A + Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK 326 Query: 853 SLNQVKNELAEQLALETVSRQAAEASLAATNEQWQSLRMQ---LENELNSSKA 902 L +L EQ + SRQ+ L A+ E + L + LE + S+A Sbjct: 327 QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA 379
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 704 bits (1819), Expect = 0.0 Identities = 268/877 (30%), Positives = 415/877 (47%), Gaps = 59/877 (6%) Query: 7 HQQALSRLRFSTLPALS-------ASLLSMPALAAPADLQFEPGFIRQSPGQPADAGALA 59 +Q+ L A + A + A+L F P F+ P AD Sbjct: 9 YQRNTQCLHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVAD----- 63 Query: 60 LRALAEQRPLAAGRYSLELYLNLSPLGKRDITLDDSRDGQTLAPCLSADLLDEIGVREQH 119 L + L G Y +++YLN + RD+T + Q + PCL+ L +G+ Sbjct: 64 LSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTAS 123 Query: 120 LGARQPGDEGHCIDLPTQLAGASADLDAGKLRLNLSIPQFYLRRDTSGAIAEHHWDEGIN 179 + + C+ L + + A+A LD G+ RLNL+IPQ ++ G I WD GIN Sbjct: 124 VSGMNLLADDACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGIN 183 Query: 180 AAFVNYQASAQHSNRRGNGTHNSHDLYLNSGVNLYGWRLRSQQALREN-----RQGELRW 234 A +NY S R G + L L SG+N+ WRLR N + +W Sbjct: 184 AGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKW 243 Query: 235 TRTNTYAQRDLPARWGTLTLGETFTQGEVFRSLPFKGVKLASDTEMLPDAMQNYAPVLRG 294 NT+ +RD+ LTLG+ +TQG++F + F+G +LASD MLPD+ + +APV+ G Sbjct: 244 QHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHG 303 Query: 295 VAQTYAKLEVLQNGYPLYSTFVAPGPYEIDDLAVGASSGELEVVLTEADGQVRNFIQPYS 354 +A+ A++ + QNGY +Y++ V PGP+ I+D+ +SG+L+V + EADG + F PYS Sbjct: 304 IARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYS 363 Query: 355 TLGNLMRAGVWRYDLALGRYHGAYEA-DTPALWQGTLARGMGWESTLYAGVLGGDYYRAA 413 ++ L R G RY + G Y + P +Q TL G+ T+Y G D YRA Sbjct: 364 SVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAF 423 Query: 414 TLGLARDFGAFGALSLDATQATSDLGPALGQVQGNSFSARYGKAFD-SGTNLRFAGYRYS 472 G+ ++ GA GALS+D TQA S L P Q G S Y K+ + SGTN++ GYRYS Sbjct: 424 NFGIGKNMGALGALSVDMTQANSTL-PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYS 482 Query: 473 TVGYRDYDEVVQQRNASDH-------------------YLGNRRSRLEASVYQHFGSAGS 513 T GY ++ + R + N+R +L+ +V Q G + Sbjct: 483 TSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTST 542 Query: 514 LSLTLSQDDYWHNSLQRRQYQAQYNTQLPHNISLNLFASQSLNSSRH-NDRIIGLSLSLP 572 L L+ S YW S Q+QA NT +I+ L S + N+ + D+++ L++++P Sbjct: 543 LYLSGSHQTYWGTSNVDEQFQAGLNTAF-EDINWTLSYSLTKNAWQKGRDQMLALNVNIP 601 Query: 573 LDFKHAS---------SATFDMQH-SAGKHSERASLSGH-FDDRRLNYRATLANDT---- 617 S SA++ M H G+ + A + G +D L+Y Sbjct: 602 FSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDG 661 Query: 618 --QQSGSLSLAYQGSHANYGMGYSESADYRNLSLSSSGALLAHGGGMLLAPFMGETNAVV 675 +G +L Y+G + N +GYS S D + L SG +LAH G+ L + +T +V Sbjct: 662 NSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLV 721 Query: 676 HVPGIEGVGVGQAQQGKTNPAGYALAPYMRPYRANQLVLQLDQLDPEIEIDNGTTQVVPR 735 PG + V +T+ GYA+ PY YR N++ L + L +++DN VVP Sbjct: 722 KAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPT 781 Query: 736 RGAVVLAKFPARRVNRLVLTLLQADDRPLPFGAQVSDAQGQVLAVVGQGGQALVATHLEQ 795 RGA+V A+F AR +L++T L +++PLPFGA V+ Q +V GQ ++ Sbjct: 782 RGAIVRAEFKARVGIKLLMT-LTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA 840 Query: 796 QQLLARWTAGSEQQCRFDITPATLPLEQGYRLQTLRC 832 ++ +W C + +Q + C Sbjct: 841 GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAEC 877
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 31.9 bits (72), Expect = 0.018 Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 9/116 (7%) Query: 1570 RSNGAQTDDISPVEDNLPADINQPSARSSSADR--NPPPAPALPQRAALEPTPDYDRS-- 1625 AQ ++ V PAD+ P A + P P P E ++ Sbjct: 43 LPAPAQPISVTMVA---PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 99 Query: 1626 -PRGSLITVKMEQTDI-MGVPLAPISSSRLLAVTGTRVKSAIPGGARTNSFATPEA 1679 P+ VK + P+ +S R S+ A + + + Sbjct: 100 KPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVAS 155
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 66.6 bits (162), Expect = 4e-13 Identities = 48/308 (15%), Positives = 82/308 (26%), Gaps = 35/308 (11%) Query: 484 RLRDDNPEVLNNQSSYEIAAAETEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEEP 543 R NPEV + + T Q A V A P PA A Sbjct: 977 RYDLYNPEVEKRNQTVDTTNITTPNNIQ--ADVPSVPSNNEEIARVDEAPVPPPAPATPS 1034 Query: 544 QAAAPVAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVVAAEKPAAERSPRNEERRNG 603 + VA K E E+ A E + +N E Sbjct: 1035 ETTETVAENS---------------------KQESKTVEK--NEQDATETTAQNREVAKE 1071 Query: 604 RQQSRNRNGRRDEERKPREERAERAPREERQPREERAPREERAPREERAPREERAPREER 663 + + N + +E + E E E ++ EE+A E +E + Sbjct: 1072 AKSNVKANTQTNEVAQSGSETKETQTTETKETATVEK--EEKAKVETEKTQEVPKVTSQV 1129 Query: 664 APRQPREDRRSNRGEERVRELREPLDATPPAEREERQPREERATREERA---PREERAPR 720 +P+Q + E RE ++ P + E+ +E + + Sbjct: 1130 SPKQ-EQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 721 EERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPREERQPRAAEEAAEQA 780 P + E + + + R P A ++ Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVP----HNVEPATTSSNDR 1244 Query: 781 AELAEEQL 788 + +A L Sbjct: 1245 STVALCDL 1252 Score = 60.1 bits (145), Expect = 5e-11 Identities = 45/291 (15%), Positives = 80/291 (27%), Gaps = 26/291 (8%) Query: 713 PREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPREERQPRA 772 P E+ + + + EE A R + AP AP P E + A Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIA-RVDEAPVPPPAPATPSETTETVA 1041 Query: 773 AEEAAEQAAELAEEQLPNDELLQ----DEQEATDGERPRRRSRGQRRRSNRRERQRNANG 828 E EQ + Q ++ ++ + + + + S +E Q Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 829 ELIDGEEEGS--EEQPQQHQATELGAELAAGLAVTAAVATSNISTDAEAQANQQAERATA 886 E E+E E + + ++ ++++ + V + QA E Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETV---------QPQAEPARENDPT 1152 Query: 887 EVAT-AAETDNSEAAQPVEQVEKVEQVEAVAKAEEVAVAPAVEQPVSEPVAVVEATAEPV 945 N+ A EQ K E V P AT +P Sbjct: 1153 VNIKEPQSQTNTTADT--EQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPT 1210 Query: 946 VEIAPQAAVEATPVVEPAVVAETVAAEAPVEAPAVEAGEIEQAPAVVEAAS 996 V + +V + PA + A+ + S Sbjct: 1211 V-------NSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTS 1254 Score = 58.5 bits (141), Expect = 2e-10 Identities = 45/302 (14%), Positives = 77/302 (25%), Gaps = 36/302 (11%) Query: 647 PREERAPREERAPR-EERAPRQPREDRRSNRGEERVRELREPLDATPPAEREERQPREER 705 P E+ + Q + EE R P+ PPA P E Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPV--PPPAPAT---PSETT 1037 Query: 706 ATREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPR 765 T E + +E + + E + +E ++ + E A Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET----- 1092 Query: 766 EERQPRAAEEAAEQAAELAEEQLPNDELLQDEQEATDGERPRRRSRGQRRRSNRRERQRN 825 +E Q +E A E E+ E Q+ + T P++ + R+ + Sbjct: 1093 KETQTTETKETATVEKE--EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND 1150 Query: 826 ANGELIDGEEEGSEEQPQQHQATELGAELAAGLAVTAAVATSNISTDAEAQANQQAERAT 885 ++ +E S+ A T A S + Sbjct: 1151 PT---VNIKEPQSQTNTT---------------ADTEQPAKETSSNVEQPVTESTTVNTG 1192 Query: 886 AEVATAAETDNSEAAQP-----VEQVEKVEQVEAVAKAEEVAVAPAVEQPVSEPVAVVEA 940 V E QP K +V VA+ + Sbjct: 1193 NSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252 Query: 941 TA 942 T+ Sbjct: 1253 TS 1254 Score = 50.1 bits (119), Expect = 6e-08 Identities = 35/208 (16%), Positives = 57/208 (27%), Gaps = 20/208 (9%) Query: 878 NQQAERA--TAEVATAAETDNSEAAQPVEQVEKVEQVEAVAKAEEVAVAPAVEQPVSEPV 935 N + E+ T + +N +A P E +A+ +E V P + P Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNN----EEIARVDEAPVPPPAP---ATPS 1034 Query: 936 AVVEATAEPVVEIAPQAAVEATPVVEPAVVAETVAAEAPVEAPAVEAGEIEQAPAVVEAA 995 E AE + + E VA EA A + Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN-----------TQTN 1083 Query: 996 SVAKQPAPVIEAQPEAVAEPAPVVVEPAAIEAPAAVEPATVMLANGRAPNDPREVRRRKR 1055 VA+ + E Q E A V E A + + + + E + + Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 1056 EAEAAAKAAQEAAATEEPALEAADEHKP 1083 E + AD +P Sbjct: 1144 EPARENDPTVNIKEPQSQTNTTADTEQP 1171
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 78.7 bits (194), Expect = 5e-17 Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 14/233 (6%) Query: 562 RADGLYNGDCSLAPVLVFLNDHKAETLERVTAVAKAFAD--SHNKEGLQFLLAAGNAG-I 618 NG + + A L+ A+ A+ +G++ L + Sbjct: 276 NVIARINGKPAAGLGIKLATG--ANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFV 333 Query: 619 EAATNEVIKSAELTILILVYICVAVMCLITFRSFAATLCIVLPLVLTSVLGNALMAYMGI 678 + + +EV+K+ L + V ++ + ++ ATL + + + + A++A G Sbjct: 334 QLSIHEVVKT-----LFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGY 388 Query: 679 GVKVATLPVVALGVGIGVDYGIYIYSRLESFLR-AGLPLQEAYYQTLRSTGKAVLFTGLC 737 + T+ + L +G+ VD I + +E + LP +EA +++ A++ + Sbjct: 389 SINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMV 448 Query: 738 LAIGVCTWIF---SAIKFQADMGLMLTFMLLWNMFGALWLLPALARFLIKPEK 787 L+ F S + + + ++ AL L PAL L+KP Sbjct: 449 LSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVS 501 Score = 46.8 bits (111), Expect = 4e-07 Identities = 35/214 (16%), Positives = 78/214 (36%), Gaps = 13/214 (6%) Query: 245 VMVAMFFGVALAITWVLLYWFTWCIRSTIAVLITTLVAVVWQLGLMHAVGFGLDPYSMLV 304 V+ +F + L +++Y F +R+T+ I V ++ ++ A G+ ++ +M Sbjct: 340 VVKTLFEAIMLVF--LVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFG 397 Query: 305 PFLIFAIGISHGVQKINGIA-LQSSDADNALTAARRTFRQLFLPGMIAILADAVGFITLL 363 L + + + + + + D A ++ Q+ + + + FI + Sbjct: 398 MVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMA 457 Query: 364 IID--IGVI-RELAIGASIGVAVIVFTNLILLPVAISYV--GISKKAIERSKKDATREHP 418 G I R+ +I +A+ V LIL P + + +S + E + Sbjct: 458 FFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNT 517 Query: 419 FWRLLSNFASAKVAPV-----SVLLALVAFAGGL 447 + N + V + LL G+ Sbjct: 518 TFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGM 551 Score = 34.0 bits (78), Expect = 0.002 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 4/123 (3%) Query: 623 NEVIKSAELTILILVYICVAVMCL-ITFRSFAATLCIVLPLVLTSVLGNALMAY-MGIGV 680 E + + L+ + V +CL + S++ + ++L + L ++G L A Sbjct: 864 QERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLG-IVGVLLAATLFNQKN 922 Query: 681 KVATLPVVALGVGIGVDYGIYIYSRLESFLRA-GLPLQEAYYQTLRSTGKAVLFTGLCLA 739 V + + +G+ I I + + G + EA +R + +L T L Sbjct: 923 DVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFI 982 Query: 740 IGV 742 +GV Sbjct: 983 LGV 985
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.8 bits (124), Expect = 1e-08 Identities = 24/198 (12%), Positives = 60/198 (30%), Gaps = 4/198 (2%) Query: 238 QRLEQAQQQFKADQTGERQLEQQRSWLNEQRQLQAQHVEAGTALQAAEQGWQ--LLAEPR 295 + + + K G + Q +L+ + + + + L EP Sbjct: 116 ESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPY 175 Query: 296 LDLVRLERLAPQRHQFHRQ-QALSAQLAPVAAKIAEQQQQQDALQVRTHELEQALNAARQ 354 V E + Q Q + +++ ++ + R + E + Sbjct: 176 FQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Query: 355 ALADRQAQHGENTPRLRQAFAAQDNLARLDQELAAQRSSNQQAEQQVADGQQQLQQL-ED 413 L D + + ++ EL +S +Q E ++ +++ Q + + Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 414 NQQRSLQQLAQIDTALAD 431 + L +L Q + Sbjct: 296 FKNEILDKLRQTTDNIGL 313 Score = 37.9 bits (88), Expect = 2e-04 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 34/223 (15%) Query: 329 AEQQQQQDALQVRTHELEQALNAARQALADRQAQHGENTPRLRQAFAAQDNLAR---LDQ 385 A+ + Q +L E + +R ++ + Q + ++ L + + Sbjct: 134 ADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKE 193 Query: 386 ELAAQRSSNQQAEQQVADGQQQLQQLEDNQQRSLQQLAQIDTALADSQHLAGLADAW-HA 444 + + ++ Q E + + + + R + L D L HA Sbjct: 194 QFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHA 253 Query: 445 YLPQLKQVMLIGGRLSKGRDELPGLQALASQANAHLQAERDAYDLLFREAKAEPQALAEQ 504 L Q + + L + +L +++ A Q + Sbjct: 254 VLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLF----------------- 296 Query: 505 IDLLGGMLQDNRKQQRAVEELSRLHARERELRQQLDAARERQQ 547 + +++L + L +L ERQQ Sbjct: 297 -------------KNEILDKLRQTTDNIGLLTLELAKNEERQQ 326 Score = 37.9 bits (88), Expect = 3e-04 Identities = 27/204 (13%), Positives = 61/204 (29%), Gaps = 16/204 (7%) Query: 730 DAARLNQQLQAAHDAQQQAQRHLEQQHQALANDEQQLQQGLSDLAGVLPEEALKALNEDP 789 A + QA+ LEQ + + +L + P + E Sbjct: 128 TALGAEADTLKTQSSLLQAR--LEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVL 185 Query: 790 ANAFLALDQQIALRRQHLEQRKDEQEEQQARQTQLDKLRDQQQARVQGQQQL-------- 841 L +Q + Q ++ + +++ R T L ++ + + +L Sbjct: 186 RLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLH 245 Query: 842 -----QQKLATLDEQRQQAQASLGELLGEHASAEAWQQHMDTALEQARA-LDADTAQRLQ 895 + + + + +A L + E+ + + +L+ Sbjct: 246 KQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR 305 Query: 896 ELRTQGVQLASELKANAQQQQALT 919 + L EL N ++QQA Sbjct: 306 QTTDNIGLLTLELAKNEERQQASV 329 Score = 35.6 bits (82), Expect = 0.001 Identities = 29/201 (14%), Positives = 57/201 (28%), Gaps = 17/201 (8%) Query: 396 QAEQQVADGQQQLQQLEDNQQRSLQQLAQIDTALADSQHLAGLADAWHAYLPQ-LKQVML 454 AE Q L Q Q R I+ L + + L+ L Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 455 IGGRLSKGRDELPGLQALASQANAHLQAERDAYDLLFREAKAEPQALAEQIDLLGGMLQD 514 I + S +++ + +AER + + ++D +L Sbjct: 191 IKEQFSTWQNQKYQKE----LNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHK 246 Query: 515 N-----------RKQQRAVEELSRLHARERELRQQLDAARERQQQAMQQRQQLI-TEGTA 562 K AV EL ++ ++ ++ +A+E Q Q + I + Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQ 306 Query: 563 AKAELEAAEQALTLTRQLLER 583 + L + + Sbjct: 307 TTDNIGLLTLELAKNEERQQA 327 Score = 35.6 bits (82), Expect = 0.001 Identities = 27/206 (13%), Positives = 63/206 (30%), Gaps = 12/206 (5%) Query: 570 AEQALTLTRQLLERQRLARNTSVEELRGQLRDGEPCPVCGSAEHPFHQPEALLQSLGRHD 629 AE T+ L + RL + R + P + + E + L Sbjct: 132 AEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLI 191 Query: 630 QAEEDAAQKQVESLNSKLVELRTQLGVVNAQLKDYQQQQQHLSEQLQPIVAQVQAHSLWP 689 + + Q Q L + R + V A++ Y+ + +L + Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRL----------DDFS 241 Query: 690 ALAPQDDIARSTWLDSQLRRLDEHIGQDEKRQKVLLALQKDAARLNQQL-QAAHDAQQQA 748 +L + IA+ L+ + + E + + + L ++ + ++ + + Sbjct: 242 SLLHKQAIAKHAVLEQE-NKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI 300 Query: 749 QRHLEQQHQALANDEQQLQQGLSDLA 774 L Q + +L + Sbjct: 301 LDKLRQTTDNIGLLTLELAKNEERQQ 326 Score = 31.3 bits (71), Expect = 0.024 Identities = 26/203 (12%), Positives = 62/203 (30%), Gaps = 15/203 (7%) Query: 188 LEKLTNTAIYTRLGQRAFSKAREAGEAHKALNDRASHLLPMAVEARTELDQRLEQAQQQF 247 K ++ + RL Q + + E +K + + E+ + ++QF Sbjct: 136 TLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQF 195 Query: 248 KADQTGERQLEQQRSWLNEQRQLQAQHVEAGTALQAAEQGWQLLAEPRLDLVRL-ERLAP 306 Q + Q E + +A+ + + E ++ D L + A Sbjct: 196 STWQNQKYQKELNL------DKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAI 249 Query: 307 QRHQFHRQQA----LSAQLAPVAAKIAEQQQQQDALQVRTHELEQAL-NAARQALADRQA 361 +H Q+ +L +++ + + + + + + Q N L Sbjct: 250 AKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTD 309 Query: 362 QHGENTPRLRQAFAAQDNLARLD 384 G T L + ++ Sbjct: 310 NIGLLTLELAK---NEERQQASV 329
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 32.2 bits (73), Expect = 0.006 Identities = 16/79 (20%), Positives = 29/79 (36%) Query: 442 NQALVQQLLQQREAKAEEQPPSSDAQGTPGSETEGNSSSAGSPAQGTPGNDQEANAEQAG 501 N + L+ R+ EQ + G PG+ + + +P P N Q A Sbjct: 284 NGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQT 343 Query: 502 ESSNNQAAPGNQAGGDDSV 520 +S N + G ++ + Sbjct: 344 STSTNSNSAGPRSTQRNET 362
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.045 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 23/147 (15%) Query: 22 EKLVERLLIVLLADGHMLVEGAPGLAKT---KAIKELAEGIEAQFHRIQFTPDLLPADIT 78 +++ L ++ D +++ G G K +A+ + + F I +P D+ Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAA--IPRDLI 204 Query: 79 GTEIYRPETGSFV---------FQQ---GPIFHNLVLADEINRAPAKVQSALLEAMAERQ 126 +E++ E G+F F+Q G +F DEI P Q+ LL + + + Sbjct: 205 ESELFGHEKGAFTGAQTRSTGRFEQAEGGTLF-----LDEIGDMPMDAQTRLLRVLQQGE 259 Query: 127 VS-VGRSTYDLSPLFLVMATQNPIEQE 152 + VG T S + +V AT ++Q Sbjct: 260 YTTVGGRTPIRSDVRIVAATNKDLKQS 286
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.2 bits (164), Expect = 4e-14 Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 5/148 (3%) Query: 197 PRLNVLVIDDHPANLQLMAQQLAYLGLEHSSARDGREGLATWRAGEFDVVVLDCNMPHMN 256 +LV DD A ++ Q L+ G + + AG+ D+VV D MP N Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 257 GYQLATAVRTEERHGKRPRCTILGYTANAQPEVRRKCLSAGMDDCLLKPISLSTLSQRLA 316 + L ++ RP +L +A K G D L KP L+ L + Sbjct: 62 AFDLLPRIKKA-----RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 317 GIRPRRQHRPRRKLYQLDGLAAVVGPDP 344 + RP + +VG Sbjct: 117 RALAEPKRRPSKLEDDSQDGMPLVGRSA 144
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 48.6 bits (116), Expect = 3e-08 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 17/102 (16%) Query: 200 LRH-IRRAASDQLGVQVTEAVIGRPVLFRSSMGPEGSDQ----AVKLLEEAAARAGFKFV 254 L+H I++ S+ ++ PV G+ Q A++ E+A AG + V Sbjct: 91 LQHFIKQVHSNSFMRPSPRVLVCVPV---------GATQVERRAIR---ESAQGAGAREV 138 Query: 255 DFLHEPAAAAITYHTQSADANRTLVVDVGGGTTDITIGLVGG 296 + EP AAAI ++A ++VVD+GGGTT++ + + G Sbjct: 139 FLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG 180
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.5 bits (71), Expect = 0.007 Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 6/40 (15%) Query: 103 DDLINSLDSLD------GLDGLDGLDGLDGLDGGRGYDKL 136 DDLI D D G D L G +G D L GG G DKL Sbjct: 746 DDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKL 785
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.4 bits (66), Expect = 0.021 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Query: 34 AAAAVKALNEYYDEQKAERIKRYSEALLTWVEDVDFS--TAKNLAEEIEYADLLQACIND 91 AV A + DEQ +I Y + L VD+S + K+LA+ + +L A I Sbjct: 72 LCGAVLARVDAGDEQLERKIH-YRQQDL-----VDYSPVSEKHLADGMTVGELCAAAITM 125 Query: 92 SDGSKA 97 SD S A Sbjct: 126 SDNSAA 131
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 27.3 bits (60), Expect = 0.031 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 11/77 (14%) Query: 24 TRITDGDGKIIEG-----------VKSQASFAAFEYPELLLHRISLNNLKATADVALDGG 72 R TDG K I G ++++ + +A + P+ L++ + +KAT + A G Sbjct: 376 RRKTDGSSKFINGREIDAVTNDALIQAKRTISAIDKPKNFLNQKNRKQIKATIEAANQQG 435 Query: 73 FLAMDSLRKEIHSQLTA 89 A + +HSQ+ + Sbjct: 436 KRAEFWFKYGVHSQVKS 452
>SECA#SecA protein signature. Length = 901 Score = 26.4 bits (58), Expect = 0.023 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%) Query: 56 AQILAVLDLKVV---PSEMRCFNERDIEMFIHGSKRWMEHVQGLDQLEEG 102 AQ + V K MR F E+ + M W EH+ +D L +G Sbjct: 741 AQSIEVYQRKEEVVGAEMMRHF-EKGV-MLQTLDSLWKEHLAAMDYLRQG 788
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 39.3 bits (92), Expect = 3e-05 Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 27/160 (16%) Query: 9 LIRNATLVNEGLRWVGDLRVRNGRIDTIGEA----------LEQLPGEELIDATGLWLLP 58 +I NA +++ D+ +++GRI IG+A + PG E+I G + Sbjct: 71 VITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTA 130 Query: 59 GMIDDQVHFREPGLTHKADIASESRACAAGGITSFMEMPNTKPAALDRAT--LEAKYDI- 115 G +D +HF P +A G+T + T PA AT + I Sbjct: 131 GGMDSHIHFICPQQIEEA---------LMSGLTCMLG-GGTGPAHGTLATTCTPGPWHIA 180 Query: 116 ----AAGSSVVNYAFYMGASNDNLDAIRDIDPASTPGLKV 151 AA + +N AF + A+ ++ LK+ Sbjct: 181 RMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKL 220
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 58.7 bits (142), Expect = 1e-11 Identities = 71/372 (19%), Positives = 131/372 (35%), Gaps = 15/372 (4%) Query: 15 PRKALIASVTGYAMDGFDLLILGFMLPAITIGLALTSSEA---GSLVTWTLLGAVAGGLI 71 P + LI ++ A+D + ++ +LP + L ++ G L+ L A + Sbjct: 3 PNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPV 62 Query: 72 FGQLSDRYGRVRMLTLCILTFSIFTGLCAIAQGYWDLLIYRTLAGFGLGGEFGIGMALIA 131 G LSDR+GR +L + + ++ + A A W L I R +AG G + A IA Sbjct: 63 LGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIA 121 Query: 132 ETWPAHRRNRASSYVGMGWQAGVLAAALLTPLLLPYIGWRGMFLVGLLPAFVSLIVRHTM 191 + R R ++ + G++A +L L+ + F L L + Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 192 SEPAEFVKAAADPVPFA--RRFTDLFKDRQTTKASVGVMVLTSVQNFGYYGLMIWMPSYL 249 E K P+ R T + + V +Q G +W+ + Sbjct: 182 PES---HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWV-IFG 237 Query: 250 SKKFGFSLMASG-TWTAVTVLGMAFGIWLFGQLADRFGRKKMFLLYQAGAAIMVIAYANL 308 +F + G + A +L + G +A R G ++ L+ A Sbjct: 238 EDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERR-ALMLGMIADGTGYILLAF 296 Query: 309 DNPTVMLFAGAIMGIFVNGMIGGYGALISDLYPAQIRATAQNVLFNIGRAAGGFGPLVVG 368 M F ++ + A++S + + Q L + GPL+ Sbjct: 297 ATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFT 356 Query: 369 AVALHYSFTAAI 380 A+ Y+ + Sbjct: 357 AI---YAASITT 365
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 42.3 bits (99), Expect = 4e-07 Identities = 47/192 (24%), Positives = 70/192 (36%), Gaps = 26/192 (13%) Query: 2 SKQALIIIDIQN---DYFPGGKWTLDGADQAADNAARLLAAARQRGDLVVHV-----RHE 53 ++ L+I D+QN D F G + + N +L Q G VV+ ++ Sbjct: 29 NRAVLLIHDMQNYFVDAFTAG---ASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNP 85 Query: 54 FDSAD-APFFAPGSQGAAIHSKV----APVKGEPVVLKHKVNAFLGTELEHTLDRHGVEA 108 D A F+ PG K+ AP + V+ K + +AF T L + + G + Sbjct: 86 DDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQ 145 Query: 109 LTIAGSMSHMCIDAATRAAADLGYTVTVAHDACATLPLEFDGKQVPAAQVHDSAMAALAF 168 L I G +H+ A DA A LE H A+ A Sbjct: 146 LIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEK----------HQMALEYAAG 195 Query: 169 AYAKVVKTEELL 180 A V T+ LL Sbjct: 196 RCAFTVMTDSLL 207
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.018 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 6/83 (7%) Query: 292 DWLVQVPWKAQSKVRLDLTKAEEILDADHYGLEEVKERILEYLAVQKRVKKIRGP----- 346 DW+ W ++ L D+ +++ + V ++ P Sbjct: 537 DWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFD 596 Query: 347 -VLCLVGPPGVGKTSLAESIAAA 368 + L G G+GK++L ++ Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGL 619
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 120 bits (304), Expect = 8e-40 Identities = 47/88 (53%), Positives = 64/88 (72%) Query: 2 NKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKDRAERTGR 61 NK +LI +A + ++ K + A+DAV +V+ L +G+ V L+GFG F V++RA R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKAIKIEAAKVPGFKAGKGLKDAV 89 NPQTG+ IKI+A+KVP FKAGK LKDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 30.8 bits (69), Expect = 0.012 Identities = 13/38 (34%), Positives = 19/38 (50%) Query: 536 GEDGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLV 573 GE ++ F +D P++ +VVLRDG LV Sbjct: 203 GEATVESLRHALFFEKTLTNGEDNPLWRTVVLRDGLLV 240
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 50.9 bits (122), Expect = 1e-09 Identities = 46/188 (24%), Positives = 69/188 (36%), Gaps = 20/188 (10%) Query: 11 LLLLTGTATLPSTAAAQP-PVQAQRDPSKLHLASGSALLIDLNSNQELYSSHADRVVPIA 69 L +++ ATLP A P P++ + + +DL S + L + AD P+ Sbjct: 6 LCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMM 65 Query: 70 SVTKLMTAMVVLDAKLPMDEMLTMTIANNPEMKGVYSRV---RLGSQLDRRETLLITLMS 126 S K++ VL DE L I + YS V L + E + Sbjct: 66 STFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITM 125 Query: 127 SENRAANSLANAYPGGYPAFIKAMNAKARSLGMAHTR---------YVEPTGLSTQNVST 177 S+N AAN L A GG + A R +G TR P ++ +T Sbjct: 126 SDNSAANLLL-ATVGG----PAGLTAFLRQIGDNVTRLDRWETELNEALPG--DARDTTT 178 Query: 178 ARDLAKLL 185 +A L Sbjct: 179 PASMAATL 186
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 100 bits (249), Expect = 1e-27 Identities = 77/257 (29%), Positives = 105/257 (40%), Gaps = 31/257 (12%) Query: 5 KVAIVTAGGSGMGAAAARRLAADGFKVG----------ILSSSGKGEALAQELGGIGVTG 54 K+A +T G+G A AR LA+ G + + SS K EA E V Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 55 SNQSNEDLQRLVDAVIHKWGRIDVLVNSAGHGPRAPILEISDEDWHQGMETYLLNVIRPV 114 S +E R+ + G ID+LVN AG I +SDE+W V Sbjct: 69 SAAIDEITARIEREM----GPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 115 RLVTPYMQRQNGGAIINISTAWVFEPSELFPTSAVFRAGLASFSKIYADKYAADNIRINN 174 R V+ YM + G+I+ + + P A +A F+K + A NIR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 175 VLPG----------WIDSLPAT-------EQRREGVPLKRYGTSEEIAATIAFLASEGAA 217 V PG W D A E + G+PLK+ +IA + FL S A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 218 YITGQNIKVDGGVTRSV 234 +IT N+ VDGG T V Sbjct: 245 HITMHNLCVDGGATLGV 261
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 57.7 bits (139), Expect = 1e-12 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Query: 18 DRAMALFAEKGFGQVSMRELAAHVGLTAGSLYHHFPSKQDLLYDLIEELYEELQATLDQG 77 D A+ LF+++G S+ E+A G+T G++Y HF K DL ++ E + + Sbjct: 18 DVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEY 77 Query: 78 RRAMARGSSA-LSCLIAAHWQLHAERPLQFRLAERDL-CCLSDDQRARLALLRKRYEAGL 135 + + L ++ + + L E C + A + ++ Sbjct: 78 QAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLES 137 Query: 136 LRLIA 140 I Sbjct: 138 YDRIE 142
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.7 bits (152), Expect = 3e-14 Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 7/210 (3%) Query: 5 ARYHRMLPELRKANLVEATLVCLKRHGFQGASIRKISAEAGVSVGLISHHYAGKDELVAE 64 AR + + + ++++ L + G S+ +I+ AGV+ G I H+ K +L +E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 65 AYMAVTGRVMGLLREAMAQAAPNARERLSAFFRASFCAELLDPQ---LLDAWLAFWGAVK 121 + + L E A+ + L + + + + L++ V Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 122 TADAINQVHDHSYGEYRNELSRLLAK-LAEEEGWQGFDADLAAISLSALLDGLWLESGLN 180 + Q + E + + + L + + AAI + + GL Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 181 PGTFTPEQGVVICEAWVDGLQAGGRRRFSL 210 P +F ++ +V L +L Sbjct: 182 PQSFDLKK---EARDYVAILLEMYLLCPTL 208
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99.5 bits (248), Expect = 3e-26 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 1/130 (0%) Query: 3 PRVLIVDDDPLIRDLLQAYLSQEGYDVHCADTAEKAEALLGSQDVDLVLLDIRLPGKDGL 62 +L+ DDD IR +L LS+ GYDV A + + D DLV+ D+ +P ++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 TLTRELR-VRSEVGIILITGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRRVR 121 L ++ R ++ +++++ +N + I E GA DY+ KP + EL+ + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 HAREVHPAPA 131 + Sbjct: 124 RRPSKLEDDS 133
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 58.3 bits (141), Expect = 5e-11 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 3/114 (2%) Query: 514 ILVVEDVALNREVAGGLLLRDGHRVSFAEDAGQALQACAQRRFDLVLLDVHLPGMSGVEL 573 ILV +D A R V L R G+ V +A + A DLV+ DV +P + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 574 CRQLRASPGPNRHSRILALTAGVQPGQVSGYLDAGMQGVLAKPLRLDNLREALA 627 +++ +L ++A + G L KP L L + Sbjct: 66 LPRIKK---ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.044 Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 57 PIALYPDPLLAQVLMASTYPGQVSEAV 83 P+A YP V +++ YPG ++ V Sbjct: 31 PVAQYPTIAPPAVSVSANYPGADAQTV 57
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 5e-18 Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 10/144 (6%) Query: 3 RVLVVDDEQTLAQNLQAYLQAQGLEVHVAHDGASGIEQAESLAPQVVVLDYRLPDMEGFQ 62 +LV DD+ + L L G +V + + A+ + +VV D +PD F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VLEAVRKNR-QCHFVLITAHPTVEVRERAAELGVSHVLFKPFPLVELARAIFDLMGIERR 121 +L ++K R ++++A T +A+E G L KPF L E I Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTE---------LIGII 115 Query: 122 RRATDNPAEGFVERRQNRNESFPL 145 RA P + + + PL Sbjct: 116 GRALAEPKRRPSKLEDDSQDGMPL 139
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 145 bits (368), Expect = 5e-39 Identities = 79/321 (24%), Positives = 146/321 (45%), Gaps = 29/321 (9%) Query: 303 DERLNTLTMRDTPDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRILDLGLQWPNTFGV 362 + N L + PD + E+++ D P+V++E + EV + L+LG+QW N Sbjct: 315 HGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAG 374 Query: 363 ---LSNDGKPVSVL-------DQLKGIDSSRIS------------ISPAPQAKINA--SD 398 +N G P+S ++ + SS S + A S Sbjct: 375 MTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSS 434 Query: 399 KDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQP 458 + LA+P I + +A ++GQ VP+++ + +T G I +V VG+KL+V+P Sbjct: 435 TKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQ--TTSGDNIFNTVERKTVGIKLKVKP 492 Query: 459 TVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRND 518 ++ + V +++ EVS+ ++ + +TR ++ + GET V+ GL+ Sbjct: 493 QINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKS 552 Query: 519 HNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNL-PYQSPSDMEFSTGT 577 + + +K+P LGDIP +G LF S +SK L+L I P ++R+ Y+ S +++ Sbjct: 553 VSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSGQYT--A 610 Query: 578 ESAMQVRQMAPLPPMDVPGNA 598 + Q +Q + Sbjct: 611 FNDAQSKQRGKENNDAMLNQD 631
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 49.9 bits (119), Expect = 1e-10 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 15/113 (13%) Query: 1 MKTRRRMHGFSLIEVVLTLALLGLLASMAAPLTETVVRRGKEQQLREALYQIRDAIDAYK 60 M+ + GF+L+E+++ + ++G+LAS+ P + +Q+ + + +A+D YK Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK 60 Query: 61 RAFDAGYIEKRLDASGYPPNLQVLVDGVRDVRSAKGAKFY----FLRRIPHDP 109 LD YP Q L V A Y +++R+P DP Sbjct: 61 -----------LDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADP 102
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 63.8 bits (155), Expect = 3e-16 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 25/141 (17%) Query: 1 MKRSKGFTLIELLVVMAIIATLMTIAMPRYFNSLESSREATLRQSLAVLRESLDHYYGDT 60 + +GFTL+E++VV+ II L ++ +P + E + + + L +LD Y D Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDN 63 Query: 61 GHYPDS---LEQLVEQRYL----RNTPVDPITER--SDAW----QLVPP----------- 96 HYP + LE LVE L N + +R +D W LV P Sbjct: 64 HHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLSA 123 Query: 97 -PEGVAGGVADIKSGATGRAR 116 P+G G DI + + + Sbjct: 124 GPDGEMGTEDDITNWGLSKKK 144
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 319 bits (819), Expect = e-104 Identities = 129/369 (34%), Positives = 188/369 (50%), Gaps = 52/369 (14%) Query: 306 RALQLPRHGRVNGSTPASKPTLSKQSPALDALAGGDPRLARNLRMARQGLGNGLPVLLLG 365 RAL P+ + L G + R+ + + L +++ G Sbjct: 117 RALAEPKRRPSKLEDDSQDG---------MPLVGRSAAMQEIYRVLARLMQTDLTLMITG 167 Query: 366 ETGTGKEVVARALHQASPRADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMVGR 425 E+GTGKE+VARALH R + PFVA+N AAIP LIESELFG+ +GAFTG++ GR Sbjct: 168 ESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRST-GR 226 Query: 426 LMQAHGGTLFLDEIGDMPLALQARLLRVLQERRVAPLGAGDEQDIDVALICATHRDLKRL 485 QA GGTLFLDEIGDMP+ Q RLLRVLQ+ +G DV ++ AT++DLK+ Sbjct: 227 FEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQS 286 Query: 486 VQEQHFREDLYYRVNGVSLRLPALRER-DDLAAIIQGLLDKSDARGV---TLDPALAALL 541 + + FREDLYYR+N V LRLP LR+R +D+ +++ + +++ G+ D L+ Sbjct: 287 INQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELM 346 Query: 542 EGFDWPGNIRQLEMVVRTALAMRENGEQVLTLDHLTDCLLDELASGSAPSG--------- 592 + WPGN+R+LE +VR A+ V+T + + + L E+ Sbjct: 347 KAHPWPGNVRELENLVRRLTALYPQD--VITREIIENELRSEIPDSPIEKAAARSGSLSI 404 Query: 593 ---------------------------SLKDNELELIRGALARHQGNVSAAAEALGISRA 625 L + E LI AL +GN AA+ LG++R Sbjct: 405 SQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRN 464 Query: 626 TLYRKLKQL 634 TL +K+++L Sbjct: 465 TLRKKIREL 473
>PF06580#Sensor histidine kinase Length = 349 Score = 47.2 bits (112), Expect = 7e-08 Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 40/187 (21%) Query: 251 LQVEGLEPEAMTARAQAQV-------------AQLRLGIARSRKLIEQLLALASAQLGAL 297 ++ + EA +AQ+ A + ++R+++ L L L Sbjct: 152 WKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYS 211 Query: 298 PTPAVSLHE---VCRRVLE-DLMPLAEQKQLDIGLEGDDARLPIREVELRTVISNLVENA 353 VSL + V L+ + ++ Q + + + + ++ LVEN Sbjct: 212 NARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQV----PPMLVQTLVENG 267 Query: 354 IRHA----PVTGHVDLRVEQGVGQVTLSVSDDGPGIDPQEWERVFDPFYRGTGSVGEGSG 409 I+H P G + L+ + G VTL V + G + E +G Sbjct: 268 IKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL---------------ALKNTKESTG 312 Query: 410 LGLSIVR 416 GL VR Sbjct: 313 TGLQNVR 319
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 53.3 bits (128), Expect = 9e-10 Identities = 41/184 (22%), Positives = 70/184 (38%), Gaps = 13/184 (7%) Query: 24 VFLGFLIIALDGLDVAIIGFIAPQLKSDWHLGAQ---SLGPVLSAALIGLALGALIAGPL 80 + + +ALD + + +I + P L D G +L+ + A + G L Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 81 ADRYGRKAVLLYSVLLFGIWTLASAFSPNLETLVALRFLTGLGLGAAMPNASTLVSEYAP 140 +DR+GR+ VLL S+ + A +P L L R + G+ GA A +++ Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITD 125 Query: 141 ARSRSL---LITLAF-CGFSLGAAMGGFVSAWMIPNLGWRSVLVLGGVLPLLVLPLLYWR 196 R+ ++ F G G +GG + + L L + Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGG-----FSPHAPFFAAAALNGLNFLTGCFL 180 Query: 197 LPES 200 LPES Sbjct: 181 LPES 184
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 159 bits (402), Expect = 9e-50 Identities = 82/253 (32%), Positives = 133/253 (52%), Gaps = 9/253 (3%) Query: 12 GLDSAVCVVTGAAGGIGAALAAALVEQQAHVVLLDRDLDKCRELAATLGEHSTGEVSALA 71 G++ + +TGAA GIG A+A L Q AH+ +D + +K ++ ++L + A Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA-EAFP 63 Query: 72 CDIADPASVGQAAAQVQALHGRCDVLVNNASVLRPGALDTLSLEQWNQVLAVNLSGYLLC 131 D+ D A++ + A+++ G D+LVN A VLRPG + +LS E+W +VN +G Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 132 AQAFGRSMLARGQGRIVHVASIAAHYPQPNSGAYSAAKAGVSMLSRQLAVEWGPRGVRSN 191 +++ + M+ R G IV V S A P+ + AY+++KA M ++ L +E +R N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 192 AVCPGLIRTPLSAAFYADPQVERQRSAMTANR--------RIGEPLDIAEAVLFLASRRA 243 V PG T + + +AD Q + ++ +P DIA+AVLFL S +A Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 244 DYINGAELTVDGG 256 +I L VDGG Sbjct: 244 GHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 33.3 bits (76), Expect = 0.002 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 273 DQVLLVQMLAVGLMTVVIPLSGALSDRLGRRPVLMA----FTLAFFVMVYPLYVWV 324 +L+ + A+ + P+ GALSDR GRRPVL+ + + +M ++WV Sbjct: 44 HYGILLALYAL-MQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWV 98 Score = 32.5 bits (74), Expect = 0.003 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 12/115 (10%) Query: 40 RQFFPSDDEYASLLMALATFGVGFFMRPVGGVLLGMYSDRKGRKAAMQMIIRLMTVSIAM 99 R S+D A + LA + M+ +LG SDR GR+ + + + V A+ Sbjct: 33 RDLVHSNDVTAHYGILLALYA---LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAI 89 Query: 100 IAFAPDYLAIGMAAPLLIVVARMLQGFATGGEYASATAFLVESAPAHRKGLYGSW 154 +A AP ++ + R++ G TG A A A++ + + + + Sbjct: 90 MATAP--------FLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGF 135
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 42.0 bits (98), Expect = 5e-06 Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 36/167 (21%) Query: 352 QIGALHGYTTNEGYQWINPALRG---------QTPLSPQ---------------MEAFVT 387 QI AL Y+ +GY IN LRG +T LS M ++ Sbjct: 394 QIQALRYYSA-QGYSVINKYLRGDDYPETQAKETLLSRDYLSTNEPSDEEFKNAMSVYIN 452 Query: 388 HANEGLAKLPSYTLGDTFRGTTLPEDVMSRM-----QVGLPTSDAAFLSTSADRA----L 438 EGL+ LP +RG L + +S + +G D AF+STS D+A Sbjct: 453 DIAEGLSSLPETDHRVVYRGLKLDKPALSDVLKEYTTIGNIIIDKAFMSTSPDKAWINDT 512 Query: 439 AFNGNVKMTLQGVTGKDISFLSGHREAEVLFGPGTRFNVVDRVDNGS 485 N ++ +G D++ G EAE+LF P T+ + V+ GS Sbjct: 513 ILNIYLEKGHKGRILGDVAHFKG--EAEMLFPPNTKLKIESIVNCGS 557
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 56.4 bits (136), Expect = 1e-10 Identities = 38/186 (20%), Positives = 82/186 (44%), Gaps = 2/186 (1%) Query: 22 RYAWVVFALTFGLLISDYMSRQVLNAVFPLLKGEWALSDSQLGLLSGIVALMVGLLTFPL 81 R+ ++ L S ++ VLN P + ++ + ++ L + T Sbjct: 11 RHNQILIWLCILSFFS-VLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVY 69 Query: 82 SLLADRFGRVRSLVLMAVLWSLATLGCALAENYPQMFI-ARFLVGVGEAAYGSVGIAVVV 140 L+D+ G R L+ ++ ++ + ++ + I ARF+ G G AA+ ++ + VV Sbjct: 70 GKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVA 129 Query: 141 AVFPRDMRSTLAGAFMAGGMFGSVLGMALGGVLAQHLGWRWAFAGMALFGLVLAMVYPMI 200 P++ R G + G +G A+GG++A ++ W + + + + + ++ Sbjct: 130 RYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLL 189 Query: 201 VKEARI 206 KE RI Sbjct: 190 KKEVRI 195
>PF06704#DspF/AvrF protein Length = 129 Score = 28.3 bits (63), Expect = 0.019 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 10/46 (21%) Query: 142 GDSVLLHAAAGGVGLIVAQWARLLGLNVIGTVSTEAKAEVARAHGC 187 + V+ H G A +LL LN +VAR HG Sbjct: 49 SEMVIFHCRVGRSPDRAADLQKLLSLNF----------DVARMHGS 84
>adhesinb#Adhesin B signature. Length = 310 Score = 30.2 bits (68), Expect = 0.001 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%) Query: 7 ALLFALAALAACSS--NSAQYQDQPLVAKVGTGMSKDQVVQIGGK 49 LL A LAACSS +S + L + D I G Sbjct: 9 LLLLAFVGLAACSSQKSSTETGSSKLNVVATNSIIADITKNIAGD 53
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 95.3 bits (237), Expect = 1e-23 Identities = 87/337 (25%), Positives = 126/337 (37%), Gaps = 37/337 (10%) Query: 54 GAAVTVAGVVWVLLARPWGRLSDRLGRRRILLLGSAGFTLAYWLLCLFVEGALRWLPGAT 113 G + + ++ A G LSDR GRR +LL+ AG + Y + W+ Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAI---MATAPFLWV---- 98 Query: 114 LAFIGLIVARGCIGAFYAAIPVGCNALIADHVEPQRRARAMASLGAANAVGLVVGPALAA 173 +IG IVA G GA A A IAD + RAR + A G+V GP L Sbjct: 99 -LYIGRIVA-GITGATGA----VAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGG 152 Query: 174 LLARHSLSLPFHIMSLLPATAFLVLLFTLKPQALPHAHAPSPVRLNDP---------RLR 224 L+ S PF + L FL F L H P+R R Sbjct: 153 LMGGFSPHAPFFAAAALNGLNFLTGCFLLPE---SHKGERRPLRREALNPLASFRWARGM 209 Query: 225 RP----LLVAFSAMLSVTVSQIIVGFFALDRLHLGPAEAAQAAGIALTTVGVALMLAQVL 280 + V F L V + F DR H GI+L G+ LAQ + Sbjct: 210 TVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDAT----TIGISLAAFGILHSLAQAM 265 Query: 281 LRQL---EWPPLKMIRVGATVSALGFACGSLATTAPWLWACYFVAAAGMGFVFPAFSALA 337 + + + +G G+ + AT + + A+G G PA A+ Sbjct: 266 ITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG-GIGMPALQAML 324 Query: 338 ANAMHASEQGATAGSVGAAQGMGAVIGPLAGTLVYAL 374 + + QG GS+ A + +++GPL T +YA Sbjct: 325 SRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361 Score = 36.0 bits (83), Expect = 2e-04 Identities = 39/129 (30%), Positives = 49/129 (37%), Gaps = 8/129 (6%) Query: 263 AGIALTTVGVALMLAQVLLRQLEWPPLKMIRVGATVSALGFACGSLATTAPWLWACYF-- 320 A AL A +L + R P L + GA V A TAP+LW Y Sbjct: 50 ALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMA------TAPFLWVLYIGR 103 Query: 321 VAAAGMGFVFPAFSALAANAMHASEQGATAGSVGAAQGMGAVIGPLAGTLVYALDPRLPF 380 + A G A A+ E+ G + A G G V GP+ G L+ P PF Sbjct: 104 IVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPF 163 Query: 381 LAVAVLLLL 389 A A L L Sbjct: 164 FAAAALNGL 172
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.7 bits (126), Expect = 6e-11 Identities = 40/202 (19%), Positives = 66/202 (32%), Gaps = 23/202 (11%) Query: 1 MRYSNEHKQQTRDRLLASSGALAKRGGFASTGVAGLMKAIGLTGGAFYNHFPSKDDLFTE 60 R + + Q+TR +L + L + G +ST + + KA G+T GA Y HF K DLF+E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 VVRQELCNSPLTRLTSQ------GANRERLGRCLQQYLSLAHLHNAEGGCPLPPLGVEIA 114 + S + L + G L L L Sbjct: 62 IWELSE--SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEF 119 Query: 115 RAEAPVREVAEHWLLELHRAWSTTL-------------EDEQLAWVLISQCVGALLVGRM 161 E V + A+ L + A +++ + L+ + Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWL 179 Query: 162 LASESVQAQVLDASRQFVEQAL 183 A +S +R +V L Sbjct: 180 FAPQSFDL--KKEARDYVAILL 199
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 27.1 bits (60), Expect = 0.035 Identities = 14/47 (29%), Positives = 26/47 (55%) Query: 87 LIAASLLVAAGAVLLPSRQLLLAMAMPVFALFHGWAHGVEATPSAFW 133 L+ AS+L+A G +++P + L + +F L GW V + +F+ Sbjct: 198 LVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSFY 244
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1063 bits (2750), Expect = 0.0 Identities = 405/567 (71%), Positives = 472/567 (83%), Gaps = 2/567 (0%) Query: 3 RISRQAYADMFGPTVGDRVRLADTALWVEVEKDFTVYGEEVKFGGGKVIRDGMGQGQML- 61 R+SR AYA+MFGPTVGD+VRLADT L++EVEKDFT +GEEVKFGGGKVIRDGMGQ Q+ Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 AAEAMDLVLTNALIIDHWGIVKADIGIKHGRIAVIGKAGNPDVQPGVNVPVGPGTEVIAA 121 A+D V+TNALI+DHWGIVKADIG+K GRIA IGKAGNPD+QPGV + VGPGTEVIA Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAG 123 Query: 122 EGKIVTAGGVDSHIHFICPQQVDEALNSGVTTFIGGGTGPATGTNATTCTPGPWYLARML 181 EGKIVTAGG+DSHIHFICPQQ++EAL SG+T +GGGTGPA GT ATTCTPGPW++ARM+ Sbjct: 124 EGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIARMI 183 Query: 182 QAADSLPINIGLLGKGNASRPEALREQIAAGAVGLKLHEDWGSTPAAIDCCLGVAEEMDI 241 +AAD+ P+N+ GKGNAS P AL E + GA LKLHEDWG+TPAAIDCCL VA+E D+ Sbjct: 184 EAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEYDV 243 Query: 242 QVAIHTDTLNESGCIEDTLAAIGDRTIHTFHTEGAGGGHAPDIIRAAGQANVLPSSTNPT 301 QV IHTDTLNESG +EDT+AAI RTIH +HTEGAGGGHAPDIIR GQ NV+PSSTNPT Sbjct: 244 QVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTNPT 303 Query: 302 LPYTINTVDEHLDMLMVCHHLDPSIAEDVAFAESRIRRETIAAEDILHDMGAFAMTSSDS 361 PYT+NT+ EHLDMLMVCHHL P+I ED+AFAESRIR+ETIAAEDILHD+GAF++ SSDS Sbjct: 304 RPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISSDS 363 Query: 362 QAMGRVGEVVLRTWQVAHQMKLRRGPLAPDTYYSDNFRVKRYIAKYTINPALTHGIGHEV 421 QAMGRVGEV +RTWQ A +MK +RG L +T +DNFRVKRYIAKYTINPA+ HG+ HE+ Sbjct: 364 QAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSHEI 423 Query: 422 GSVEVGKLADLVLWSPAFFAVKPALVLKGGMIVTAPMGDINGSIPTPQPVHYRPMFGALG 481 GS+EVGK ADLVLW+PAFF VKP +VL GG I APMGD N SIPTPQPVHYRPMFGA G Sbjct: 424 GSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGAYG 483 Query: 482 AARHATRMTFLPQAAMDRGLAEELNLRSLIGVVNGCR-RVRKPDMVHNTLQPLIEVDAQT 540 +R + +TF+ QA++D GLA L + + V R + K M+HN+L P IEVD +T Sbjct: 484 RSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDPET 543 Query: 541 YQVRADGELLVCEPASELPLAQRYFLF 567 Y+VRADGELL CEPA+ LP+AQRYFLF Sbjct: 544 YEVRADGELLTCEPATVLPMAQRYFLF 570
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 42.2 bits (99), Expect = 3e-06 Identities = 31/181 (17%), Positives = 72/181 (39%), Gaps = 4/181 (2%) Query: 12 VVFLLLIGIVNYLDRSALSIANTSIQKDMMISPSQMGILLSAFSIAYAFAQLPMGMIIDR 71 +++L ++ + L+ L+++ I D P+ + +AF + ++ G + D+ Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 72 LGSK--IALGASLLGWSVAQAAFGMVNSFAGFMGLRVLLGIGEAPMFPSAAKALSEWFDA 129 LG K + G + + G + F+ + R + G G A ++ + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGH-SFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 130 NERGTPTGVVWSSTCLGPCLAPPLLTLFMVNFGWRGMFIITGVIGVVLAVCWLTFYKSKA 189 RG G++ S +G + P + + W + +I +I ++ + K + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIP-MITIITVPFLMKLLKKEV 193 Query: 190 R 190 R Sbjct: 194 R 194
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.8 bits (85), Expect = 2e-04 Identities = 25/157 (15%), Positives = 58/157 (36%), Gaps = 3/157 (1%) Query: 245 QMFRDRQIWLAIGVYFVHQITIYTVIFFLPGIISTYAALSPFQVGLLTAVPWIAAAIGAA 304 + ++ + + + T+ + +P ++ LS ++G + P + I Sbjct: 251 GLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFG 310 Query: 305 TFPRLATSPRRCRTLLFFGLLTMATGLLLASL---SSSFIGLIGFSLTALMLFVVQSIIF 361 + R +L G+ ++ L AS ++S+ I L +++I Sbjct: 311 YIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIS 370 Query: 362 VFPSSRLSGNALAAGLAFVTTCGLLGGFVGPSVMGLI 398 SS L AG++ + L G +++G + Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407
>PF05043#Transcriptional activator Length = 493 Score = 28.4 bits (63), Expect = 0.035 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 1 MNRNDLRRVDLNLLIVFETLMHERSVTRA--AEKLFLGQPAISAALSRLRNLFDDPLFVR 58 +++ R+++L L ++FE H+R R+ AE L + A+ LS +++ F D +F Sbjct: 5 LSKKSHRQLEL-LELLFE---HKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHS 60 Query: 59 TGRSM 63 + + Sbjct: 61 STNGI 65
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.1 bits (65), Expect = 0.005 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 10/88 (11%) Query: 50 DGSCPGFVACEDGRMIGYC-----FGDRDTGEIVVLALLPSYEGLGIGKSLLAMMVEQFR 104 + F+ + IG + E + +A Y G+G +LL +E + Sbjct: 64 GKAA--FLYYLENNCIGRIKIRSNWNGYALIEDIAVA--KDYRKKGVGTALLHKAIEWAK 119 Query: 105 NRGLPRVFLACSSDPDVRSYGFYRHLGW 132 + L + D ++ + FY + Sbjct: 120 ENHFCGLMLE-TQDINISACHFYAKHHF 146
>cloacin#Cloacin signature. Length = 551 Score = 33.5 bits (76), Expect = 1e-04 Identities = 19/80 (23%), Positives = 33/80 (41%) Query: 37 QGHDKGHMNEQNGATGSGTPADGMGTGNGGTHDNETDNTGGDGTDTDSGSGGNRGDGSGA 96 +GH+ G + G T G + G+ + +N G G+ + GG G G+G Sbjct: 7 RGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG 66 Query: 97 GPASGSDGSTGSGSGAGSGS 116 G + GS G+ + + Sbjct: 67 GNGNSGGGSGTGGNLSAVAA 86
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 2e-04 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 14 WDDLRIIKTLSEC-GNRAATAKKLGINVSTVSRRVSQL 50 + I+ L+ GN+ A LG+N +T+ +++ +L Sbjct: 436 MEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 56.4 bits (136), Expect = 7e-11 Identities = 73/321 (22%), Positives = 115/321 (35%), Gaps = 18/321 (5%) Query: 66 GQAISISGFFAVITSLLLVTLTQGIDRKPVLLTTTALMLVSGAMVAFAPNYLTLMVGRAV 125 G +++ + +L L+ R+PVLL + A V A++A AP L +GR V Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV 105 Query: 126 LGIAIGGYWSMSTAVMMRIAPGALVPKAIAVMQGGTALATAIAAPIGSYLGGMIGWRGAF 185 GI G +++ A + I G + M +G +GG F Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPF 163 Query: 186 FCVVPLAALALIWQAFTLP------RMPSERTKLSVTGSLRLLGDSKIAIGMAAVAFL-- 237 F L L + F LP R P R L+ S R + + AV F+ Sbjct: 164 FAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQ 223 Query: 238 FMGQFTLFTYLRPFLETVTHVDVPTLSLLLLIIGAAGLLGTLLV-GPLVSRTLNRVLVGI 296 +GQ ++ F E H D T+ + L G L ++ GP+ +R R + + Sbjct: 224 LVGQVPAALWVI-FGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML 282 Query: 297 PIIMSAIAF---AAIAVGSSVIPLAVLLGLWGLIATCAPVGWFTWLAKALPHNAEAGGGL 353 +I + A G P+ VLL G I A + G Sbjct: 283 GMIADGTGYILLAFATRGWMAFPIMVLLASGG-IGMPALQAMLSRQVDE--ERQGQLQGS 339 Query: 354 MVAVIQLAITAGATVGGLLYD 374 + A+ L G + +Y Sbjct: 340 LAALTSLTSIVGPLLFTAIYA 360
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 64.7 bits (157), Expect = 6e-14 Identities = 48/174 (27%), Positives = 71/174 (40%), Gaps = 1/174 (0%) Query: 122 LRGKVVVITGASSGIGRAAAHAFACKGARLVLAARDEEALFDVLDECTDCGTDAIAIMTD 181 + GK+ ITGA+ GIG A A A +GA + + E L V+ A A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 182 VTRNDQVQALAEQAAEFGHGRIDIWVNNAGVGAVGNFEETPLEAHEQVIQTDLIGYLRGA 241 V + + + + G IDI VN AGV G E E + G + Sbjct: 66 VRDSAAIDEITARIER-EMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 242 YVALPFFKTQGSGILINTLSLGSWVAQPYAAAYSASKFGLRGLTEALRGELTEF 295 + + SG ++ S + V + AAY++SK T+ L EL E+ Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178
>PF06580#Sensor histidine kinase Length = 349 Score = 37.2 bits (86), Expect = 7e-05 Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 38/192 (19%) Query: 190 ASQVHTSAKRCSHMVDDLLDLARCNLGTG----IPIHPEMAELNPICRSVIEELRTAFPD 245 + + + M+ L +L R +L + + E+ + S ++ F D Sbjct: 183 RALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELT----VVDSYLQLASIQFED 238 Query: 246 NLIHFNETMTISGLFDTARI-AQVFSNLVTNAIRHGDASSP----ISVTIKEEGAESHVC 300 L I+ ++ + LV N I+HG A P I + ++ + Sbjct: 239 RLQF---ENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295 Query: 301 VHNRGEPIPPEAMPYLFKPEGRYSSYAAKEKGASAGLGLGLFIAAEIVGSHGG--RIEVE 358 V N G A K S G GL + + +G +I++ Sbjct: 296 VENTGSL-------------------ALKNTKESTGTGLQN-VRERLQMLYGTEAQIKLS 335 Query: 359 SSAEEGTTFDVI 370 + +I Sbjct: 336 EKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 2e-18 Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 5/118 (4%) Query: 3 RVLVVEDDQILRWLMTEAVEHLGYEVSECSNADDAVVQLQGESSISLVITDVKMPGSIDG 62 +LV +DD +R ++ +A+ GY+V SNA + LV+TDV MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMPD-ENA 62 Query: 63 LGLAQLIWSTYYDLPVIIVSGHSVLTPGFLPLNAR---FLKKPCTLDELSLTISELLS 117 L I DLPV+++S + +L KP L EL I L+ Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.2 bits (164), Expect = 3e-16 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 6/116 (5%) Query: 11 SPPNVLIVEDESMIRELLTLYLEDWGACVTAVASADEGRDEILSRNWSLLLSDVQTPGVL 70 + +L+ +D++ IR +L L G V ++A I + + L+++DV P Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD-E 60 Query: 71 NGVD-LAWITSQQKPQTRIIVMSGYYEFAGRV--LPEGAV-FLPKPWPLTRLNEII 122 N D L I + P ++VMS F + +GA +LPKP+ LT L II Sbjct: 61 NAFDLLPRIKKAR-PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.0 bits (148), Expect = 6e-14 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 7/122 (5%) Query: 10 LSGKTVIVVEDDPTLQALLVEILIELGATCDAFDNSEDALIHLMGLKSDCSLIVVDHGVP 69 ++G T++V +DD ++ +L + L G N+ + D +V D +P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDL--VVTDVVMP 58 Query: 70 GSIKGMEFISMAHERWPGLPAILTSGYQLDASQVTP----PVTYLFKPWSIDELTQAIGQ 125 + + + P LP ++ S + + YL KP+ + EL IG+ Sbjct: 59 D-ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 126 AL 127 AL Sbjct: 118 AL 119
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 109 bits (273), Expect = 1e-30 Identities = 74/253 (29%), Positives = 116/253 (45%), Gaps = 13/253 (5%) Query: 40 LEGKIALITGADSGIGRAVAIAYAREGADVAIAYLNEHEDAQETARWVESAGRQCLLLPG 99 +EGKIA ITGA GIG AVA A +GA +A N E ++ +++ R P Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNP-EKLEKVVSSLKAEARHAEAFPA 64 Query: 100 DLAQKQHCYDIVEKTVSQFGRIDILVNNAAFQMSHETLEEIDDDEWVKTFDTNITAIFRI 159 D+ +I + + G IDILVN A + + + D+EW TF N T +F Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 160 CQAALPSMP--KGSSIINTSSVNSDDPSPSLLAYATTKGAIANFTAGLAQLLAKKGIRVN 217 ++ M + SI+ S + P S+ AYA++K A FT L LA+ IR N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 218 SVAPGPI-----WTPLIPATMPDEAVKNFGSSY----PMGRPGQPVEVAPIYVLLGSDEA 268 V+PG W+ ++ +K ++ P+ + +P ++A + L S +A Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 269 SYISGSRYAATGG 281 +I+ GG Sbjct: 244 GHITMHNLCVDGG 256
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.4 bits (76), Expect = 3e-04 Identities = 18/59 (30%), Positives = 27/59 (45%) Query: 106 LYISSLALDEAWRSQGLGVQFLRHAQQRADDAGLDGLCLIDYAENHGARRFYERHGFQI 164 I +A+ + +R +G+G L A + A + GL L N A FY +H F I Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 37.1 bits (86), Expect = 7e-05 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 10/125 (8%) Query: 6 FVTGGSGFVGQHLLARLTAAGYKTWVLMR-TPGTIERLRKQVGQLGGNPAYIHAVEGDIS 64 VTG +GF+G H+ RL AG++ + L++ +L P + + D++ Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGF-QFHKIDLA 62 Query: 65 -IEGLGLSEADKQCVSSTSVIFHLAAEFSWGLTMERAQS---VNVLGALRVAKLAASQSI 120 EG+ A +F + ++E + N+ G L + + I Sbjct: 63 DREGMTDLFASGH----FERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 121 RLLMV 125 + L+ Sbjct: 119 QHLLY 123
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.2 bits (172), Expect = 2e-16 Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 2/149 (1%) Query: 3 IVLVDDHAVVRQGYASLLRAVLPLMQVREAASGEEALARVQEQVPNLVIMDFGLPGISGL 62 I++ DD A +R L VR ++ + +LV+ D +P + Sbjct: 6 ILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 ETTRRLRQRLPQLRVLFFSMHDELPLVRQALDAGASGYLTKNSAPEVLIEAVQRVMAGHA 122 + R+++ P L VL S + +A + GA YL K LI + R +A Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 123 YIEQPLATQLACTSQQSASDPRLQRMTQR 151 L +Q + + Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRV 152
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 29.4 bits (66), Expect = 0.035 Identities = 7/28 (25%), Positives = 12/28 (42%) Query: 193 LNGVLHSVIAAGLCEKLFNAGGRLKHRH 220 + +V+A GL E++ L H Sbjct: 18 IESKDGNVLAKGLAERIGINDSLLTHNA 45
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 33.6 bits (76), Expect = 0.002 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 134 NSVRHGSDCSSLYLRAALADMLR-HNRSLNVGAEHICLTQGVQMSLSLVTSVLLKPGDVV 192 S+ SD S L + L +N+S+++ LT+ Q + SL S P Sbjct: 197 KSLSDDSDSSDLLFSQKFKEKLELNNKSIDINFIKENLTE-FQHAFSLAFSYYFAPDHRT 255 Query: 193 LVERLSYPPAWEI---FRQLGARLVTVDLDHEGCRVDQIDALCRQHKVRMMYITPHH 246 ++E L P +E + G ++ L EG D+ID L + ++ + P H Sbjct: 256 VLE-LYAPDMFEYMNKLEKGGFEKISESLKKEGVEKDRIDVLKGEKALKASGLVPEH 311
>PF05946#Toxin-coregulated pilus subunit TcpA Length = 199 Score = 30.7 bits (69), Expect = 0.005 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 8/55 (14%) Query: 224 QLVSLGR------SNGQLGSTFMVGSRTRTRSSK--FTIVISELDQAQMRDLLPS 270 LVSLG+ N +G+ + S R ++ F I + L QAQ + L+ S Sbjct: 72 GLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITS 126
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 39.1 bits (91), Expect = 3e-05 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 3/156 (1%) Query: 41 FATTLNYIDRAALGIMQPVLAKEMSWTAMDYANINFWFQVGYAIGFLLQGRLIDKVGVKR 100 + + ++ L + P +A + + +N F + ++IG + G+L D++G+KR Sbjct: 21 ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80 Query: 101 AFFFAVLLWSLATGAHGLATSAAGFMV-CRFILGLTEAANYPACVKTVRLWF-PAGERAI 158 F +++ + + S ++ RFI G AA +PA V V + P R Sbjct: 81 LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAA-FPALVMVVVARYIPKENRGK 139 Query: 159 ATGLFNAGTNVGAMVTPALLPLILAVWGWQAAFIAM 194 A GL + +G V PA+ +I W + Sbjct: 140 AFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIP 175
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 38.2 bits (89), Expect = 4e-05 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 25/108 (23%) Query: 57 RQMLERVRPEAVIIANPNNQHVATAL--DCVEAGVPVLVEKPVGVHLDEARALVEASHRR 114 R M E V+ +V++ANP H+A + E +P++ K + + + + + Sbjct: 248 RNMRENVKRSSVVVANPT--HIAIGILYKRGETPLPLVTFKYTD---AQVQTVRKIAEEE 302 Query: 115 NVPVLVGHHRRHNPLIAKAHQVISEGKLGRLINVTALWQLQKPDSYFE 162 VP+L PL A + + + I P E Sbjct: 303 GVPILQRI-----PL---ARALYWDALVDHYI----------PAEQIE 332
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.3 bits (151), Expect = 4e-14 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%) Query: 5 PRETRKDGAVTRTRILEAAGELFAALGYAETSNKAVAAKAEVDLASINYHFGSRNGLYLA 64 R+T+++ TR IL+ A LF+ G + TS +A A V +I +HF ++ L+ Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 65 VLDEARQRFLDLSDLQRITQGNQPPADKLRVLVELVVHKATSAQDNWHLRVLAAEILAPS 124 + + + +L + P D L VL E+++H S R+L I Sbjct: 62 IWELSESNIGELEL----EYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKC 117 Query: 125 PH 126 Sbjct: 118 EF 119
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 138 bits (350), Expect = 3e-38 Identities = 99/413 (23%), Positives = 178/413 (43%), Gaps = 17/413 (4%) Query: 22 LLAALMLVMFLAALDQTIVSTALPTIVSDLGGLR-WLSWVVTAYLLASTVVVPLYGKFGD 80 +L L ++ F + L++ +++ +LP I +D +WV TA++L ++ +YGK D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 81 QFGRKRVLQVAIVVFLLGSALCGAAQTMAQ-LIAFRTLQGLGGGGLMVVAMAAIGDVIPP 139 Q G KR+L I++ GS + + LI R +QG G + M + IP Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 140 AERGRYQGLFGGVFGLATVVGPLIGGFLVEHLSWHWIFYINLPLGLLALLVIGSVFRPHV 199 RG+ GL G + + VGP IGG + ++ HW + + +P+ + + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIITVPFLMKLLKKE 192 Query: 200 ALVRHEVDYIGAFFLTVALGALVLITSLGGSLLAWQSLDMLCLSLFALIGLVGFVLEQRR 259 ++ D G ++V + +L T+ + L + LS FV R+ Sbjct: 193 VRIKGHFDIKGIILMSVGIVFFMLFTTSY----SISFLIVSVLSFLI------FVKHIRK 242 Query: 260 AAEPIMPLHLFRHRTFVLAGLIGFIVGVSLFGAVTFLPLYMQVVKDATPTSAG-LQMLPL 318 +P + L ++ F++ L G I+ ++ G V+ +P M+ V + G + + P Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 319 MGGLLVVSAITGRLISRWGRYRVFPILGTLLQVVALGLLSRLELDTPMALMNLYMGLLGA 378 +++ I G L+ R G V I T L V L L+T M + + + Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTA--SFLLETTSWFMTIIIVFVLG 360 Query: 379 GLGMVMQVLILAVQNSVEPRHMGVATSGATLFRSIGGAIGVSLFGALFSHALL 431 GL V+ V +S++ + G S + G+++ G L S LL Sbjct: 361 GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLL 413
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 142 bits (360), Expect = 1e-35 Identities = 88/325 (27%), Positives = 135/325 (41%), Gaps = 58/325 (17%) Query: 3304 GGAGNDLLNGGAGADRLVGGVGNDT--YVVDNAGDVVVEATGA--------------GTD 3347 G G+D + AG+ + G G+D Y + G + ++ T A Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVK 675 Query: 3348 LVRTTLASYTMAAN--VENLTYTGVGNFSGTGNGLANI--------INGAAGNDTLAGDG 3397 +++ + ++ E Y G L + G D G Sbjct: 676 VLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSK 735 Query: 3398 GNDILNGNAGNDTLNGDAGNDQLFGGLGADRLNGGGGDDSLDGGDGNDTLLGDAGNDTLL 3457 DI +G G+D + G+ GND+L+G G D L+GG GDD L GGDGND L+G AGN+ L Sbjct: 736 FTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLN 795 Query: 3458 GGAGDDSL---DGGNGNDSLQGGDGNDTLFGDVGTDTLIGGAGNDFLNGAGGNDTVVGGA 3514 GG GDD + L GG GND L+G G D L GG G+D L G Sbjct: 796 GGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGG---------- 845 Query: 3515 GNDTMMATDGNDVFQFAAGFGNDLIINFDAIAAGGQDRLDITALNITAATFAASVTIADV 3574 GND++++ +G+G+ +I + G +D+L + ++ F Sbjct: 846 --------YGNDIYRYLSGYGHHIIDD----DGGKEDKLSLADIDFRDVAFKR------E 887 Query: 3575 GADTLVSIGAADSIRLVGVADATTV 3599 G D L+ ++ +G + T Sbjct: 888 GND-LIMYKGEGNVLSIGHKNGITF 911 Score = 98.9 bits (246), Expect = 2e-22 Identities = 86/347 (24%), Positives = 115/347 (33%), Gaps = 93/347 (26%) Query: 3221 NGEDGNDILNGGLGADVMNGGAGNDT----------FVVDNVGDT------VTEALNGGT 3264 + DG+D + G+ + G G+D +D T VT L G Sbjct: 615 HLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDV 674 Query: 3265 DLVQ--TSLASYTLGANVENLTYTGSSAFTGTGNALANT--------ITGGAGNDLLNGG 3314 ++Q ++G E Y G L T + G D G Sbjct: 675 KVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGS 734 Query: 3315 AGADRLVGGVGNDTYVVDNAGDVVVEATGAGTDLVRTTLASYTMAANVENLTYTGVGNFS 3374 D G G+D + N G+ Sbjct: 735 KFTDIFHGADGDDL-IEGNDGN-------------------------------------- 755 Query: 3375 GTGNGLANIINGAAGNDTLAGDGGNDILNGNAGNDTLNGDAGNDQLFGGLGADRLNGGGG 3434 + + G GNDTL+G G+D L G GND L G AGN+ L GG G D G Sbjct: 756 -------DRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQG- 807 Query: 3435 DDSLDGGDGNDTLLGDAGNDTLLGGAGDDSLDGGNGNDSLQGGDGNDTLFGDVGTDTLIG 3494 + L G GND L G G D LDGG G+D L+GG GND Sbjct: 808 -----NSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYR---------- 852 Query: 3495 GAGNDFLNGAGGNDTVVGGAGNDTMMATDGNDVFQFAAGFGNDLIIN 3541 +L+G G + G D + D + GNDLI+ Sbjct: 853 -----YLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMY 894 Score = 97.3 bits (242), Expect = 8e-22 Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 8/162 (4%) Query: 2403 GENGEQVVFRDSPLTAGPDSNYIRY---AGAEHIVLGGTNGDDILVSSEGDDTVWGDAGN 2459 G+ E+ +R T N E ++ GT D S+ D G G+ Sbjct: 689 GKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELI--GTTRADKFFGSKFTDIFHGADGD 746 Query: 2460 DRIEGGDGNDQLRGGAGDDIISDMGGDDNIQGGDGNDVLHGGNGVNLIIGGFGND-FIVT 2518 D IEG DGND+L G G+D +S GDD + GGDGND L G G N + GG G+D F V Sbjct: 747 DLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQ 806 Query: 2519 GEDASEAI--GGQGNDFILGSKANEQDMGNEGDDWIEKGTSD 2558 G ++ + GG+GND + GS+ + G EGDD ++ G + Sbjct: 807 GNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGN 848 Score = 90.4 bits (224), Expect = 8e-20 Identities = 66/208 (31%), Positives = 89/208 (42%), Gaps = 41/208 (19%) Query: 3166 LTGTNAANTLTGGAGNDVISGLGGNDILNGLAGADQLFGGVGNDTLNGGDDADLLNGEDG 3225 L GT A+ G D+ G G+D++ G G D+L+G GNDTL+GG+ D L G DG Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDG 781 Query: 3226 NDILNGGLGADVMNGGAGNDTFVVDNVGDTVTEALNGGTDLVQTSLASYTLGANVENLTY 3285 ND L G G + +NGG G+D F V L NV Sbjct: 782 NDKLIGVAGNNYLNGGDGDDEFQVQGNS----------------------LAKNV----- 814 Query: 3286 TGSSAFTGTGNALANTITGGAGNDLLNGGAGADRLVGGVGNDTYVV-DNAGDVVVEATGA 3344 F G GN + + G G DLL+GG G D L GG GND Y G +++ G Sbjct: 815 ----LFGGKGN---DKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGG 867 Query: 3345 GTDLVRTTLASYTMAANVENLTYTGVGN 3372 D + + ++ + GN Sbjct: 868 KEDKLSLA------DIDFRDVAFKREGN 889 Score = 86.2 bits (213), Expect = 2e-18 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 9/129 (6%) Query: 907 VLGGTSGNDIIISGDGDDTVYGDAGDDVLEGGAGNDAVLGGAGDDIITDSFGDNRLEGNA 966 + G G+D+I DG+D +YGD G+D L GG G+D + GG G+D + G+N L G Sbjct: 739 IFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGD 798 Query: 967 GNDVIVAGSMLAAGNLILGGDGQDFIITTEDISTTFGGQGDDFILGAKTNLPPTGNEGDD 1026 G+D A N++ GG G D +G +G D + G + + G G+D Sbjct: 799 GDDEFQVQGNSLAKNVLFGGKGND---------KLYGSEGADLLDGGEGDDLLKGGYGND 849 Query: 1027 WIEKGTQDG 1035 + G Sbjct: 850 IYRYLSGYG 858 Score = 76.9 bits (189), Expect = 1e-15 Identities = 64/257 (24%), Positives = 93/257 (36%), Gaps = 64/257 (24%) Query: 3249 VDNVGDTVTEALNGGTDLVQTSLASYTLGANVENLTYTGSSAFTGTGNALANTITGGAGN 3308 ++ T T+ L +L+ T+ A G+ ++ + GN + + G GN Sbjct: 705 INGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGN 764 Query: 3309 DLLNGGAGADRLVGGVGNDTYVVDNAGDVVVEATGAGTDLVRTTLASYTMAANVENLTYT 3368 D L+GG G D+L GG GND Sbjct: 765 DTLSGGNGDDQLYGGDGNDKL--------------------------------------- 785 Query: 3369 GVGNFSGTGNGLANIINGAAGNDTLAGDGGNDILNGNAGNDTLNGDAGNDQLFGGLGADR 3428 GN N +NG G+D + + + L G GND+L+G GAD Sbjct: 786 ----IGVAGN---NYLNGGDGDDEF------QVQGNSLAKNVLFGGKGNDKLYGSEGADL 832 Query: 3429 LNGGGGDDSLDGGDGNDTLLGDA--GNDTLLGGAGDDSLDGGNGNDSLQGGDGN--DTLF 3484 L+GG GDD L GG GND + G+ + D G D L D + D F Sbjct: 833 LDGGEGDDLLKGGYGNDIYRYLSGYGHHII--------DDDGGKEDKLSLADIDFRDVAF 884 Query: 3485 GDVGTDTLIGGAGNDFL 3501 G D ++ + L Sbjct: 885 KREGNDLIMYKGEGNVL 901 Score = 75.4 bits (185), Expect = 3e-15 Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 26/167 (15%) Query: 910 GTSGNDIIISGDGDDTVYGDAGDDVLEGGAGNDAVLGGAGDDIITDSFGDNRLEGNAGND 969 GT+ D D +G GDD++EG GND + G G+D ++ GD++L G GND Sbjct: 724 GTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGND 783 Query: 970 VIVAGSMLAAGNLILGGDGQDFIITTED---ISTTFGGQGDDFILGAKTNLPPTGNEGDD 1026 ++ A N + GGDG D + + FGG+G+D + G++ G EGDD Sbjct: 784 KLIGV---AGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDD 840 Query: 1027 WIEKGTQDGAPGDNFAPLLGDEVVGNDIFV--GGGGFDEMIGEGGDD 1071 ++ G GNDI+ G G + +GG + Sbjct: 841 LLKGGY------------------GNDIYRYLSGYGHHIIDDDGGKE 869 Score = 75.4 bits (185), Expect = 3e-15 Identities = 50/174 (28%), Positives = 69/174 (39%), Gaps = 49/174 (28%) Query: 3165 VLTGTNAANTLTGGAGNDVISGLGGNDILNGLAGADQLFGGVGNDTLNGGDDADLLNGED 3224 + G + + + G GND + G GND L+G G DQL+GG GND L G + LNG D Sbjct: 739 IFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGD 798 Query: 3225 GNDIL---NGGLGADVMNGGAGNDTFVVDNVGDTVTEALNGGTDLVQTSLASYTLGANVE 3281 G+D L +V+ GG GND Sbjct: 799 GDDEFQVQGNSLAKNVLFGGKGNDKL---------------------------------- 824 Query: 3282 NLTYTGSSAFTGTGNALANTITGGAGNDLLNGGAGADRLVGGVGNDTYVVDNAG 3335 G+ A+ + GG G+DLL GG G D G +++D+ G Sbjct: 825 ------------YGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDG 866 Score = 69.6 bits (170), Expect = 2e-13 Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 15/127 (11%) Query: 892 GPDSNYLHYTGEDHVVLGGTSGNDIIISGDGDDTVYGDAGDDVLEGGAGNDAVLGGAGDD 951 G D + L + + L G GND + G+GDD +YG G+D L G AGN+ + GG GDD Sbjct: 742 GADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDD 801 Query: 952 IIT---DSFGDNRLEGNAGNDVIVAGSMLAAGNLILGGDGQDFIITTEDISTTFGGQGDD 1008 +S N L G GND + +L+ GG+G D + GG G+D Sbjct: 802 EFQVQGNSLAKNVLFGGKGNDKLYGSE---GADLLDGGEGDDLL---------KGGYGND 849 Query: 1009 FILGAKT 1015 Sbjct: 850 IYRYLSG 856 Score = 66.5 bits (162), Expect = 2e-12 Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 27/153 (17%) Query: 928 GDAGDDVLEGGAGNDAVLGGAGDDIITDSFGDNRLEGNAGNDVIVAGSMLAAGNLILGGD 987 G D G D G GDD+I + G++RL G+ GND + GG+ Sbjct: 724 GTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLS------------GGN 771 Query: 988 GQDFIITTEDISTTFGGQGDDFILGAKTNLPPTGNEGDDWIEKGTQDGAPGDNFAPLLGD 1047 G D + +GG G+D ++G N G +GDD + G++ A + Sbjct: 772 GDDQL---------YGGDGNDKLIGVAGNNYLNGGDGDDEFQVQ------GNSLAKNVLF 816 Query: 1048 EVVGNDIFVGGGGFDEMIGEGGDDIFVGSDAQD 1080 GND G G D + G GDD+ G D Sbjct: 817 GGKGNDKLYGSEGADLLDGGEGDDLLKGGYGND 849 Score = 65.0 bits (158), Expect = 5e-12 Identities = 44/181 (24%), Positives = 69/181 (38%), Gaps = 27/181 (14%) Query: 894 DSNYLHYTGEDHVVLGGTSGNDIIISGDGDDTVYGDAGDDVLEGGAGNDAVLGGAGDDII 953 + H G++ + +I D +G D+ G G+D + G G+D + Sbjct: 699 SYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRL 758 Query: 954 TDSFGDNRLEGNAGNDVIVAGSMLAAGNLILGGDGQDFIITTEDISTTFGGQGDDFILGA 1013 G++ L G G+D + GGDG D +I + GG GDD Sbjct: 759 YGDKGNDTLSGGNGDDQLY------------GGDGNDKLIGVAGNNYLNGGDGDDEFQV- 805 Query: 1014 KTNLPPTGNEGDDWIEKGTQDGAPGDNFAPLLGDEVVGNDIFVGGGGFDEMIGEGGDDIF 1073 + + K G G++ L G E G D+ GG G D + G G+DI+ Sbjct: 806 ----------QGNSLAKNVLFGGKGND--KLYGSE--GADLLDGGEGDDLLKGGYGNDIY 851 Query: 1074 V 1074 Sbjct: 852 R 852 Score = 58.8 bits (142), Expect = 4e-10 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 25/156 (16%) Query: 902 GEDHVVLGGTSGNDIIISGDGDDTVYGDAGDD------------VLEGGAGNDAVLGGAG 949 G+D L G GND +I G++ + G GDD VL GG GND + G G Sbjct: 772 GDDQ--LYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEG 829 Query: 950 DDIITDSFGDNRLEGNAGNDVIVAGSMLAAGNLILGGDGQDFI----ITTEDISTTFGGQ 1005 D++ GD+ L+G GND+ S + G +D + I D+ F + Sbjct: 830 ADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDV--AFKRE 887 Query: 1006 GDDFILGAKTNLPPTGNEGD-----DWIEKGTQDGA 1036 G+D I+ + + +W EK + D + Sbjct: 888 GNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDIS 923 Score = 56.1 bits (135), Expect = 3e-09 Identities = 51/230 (22%), Positives = 77/230 (33%), Gaps = 58/230 (25%) Query: 3362 VENLTYTGVGNFSGTGNGLANIINGAAGNDTLAGDGGNDILNGNAGNDTLNGDAGNDQLF 3421 V+ T GV + + +N+I A+ + + + G+D + AG+ ++ Sbjct: 576 VDKWTVKGVQDKGAVYD-YSNLIQHASVGNNQYREI-RIESHLGDGDDKVFLSAGSANIY 633 Query: 3422 GGLGADRLNGGGGDDSLDGGDG-----------NDTLLGDAG------------------ 3452 G G D + D DG L GD Sbjct: 634 AGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKVLQEVVKEQEVSVGKRTE 693 Query: 3453 -------NDTLLGGAGDDSLD---------GGNGNDSLQ---------GGDGNDTLFGDV 3487 T + G D G D G DG+D + G+ Sbjct: 694 KTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGND 753 Query: 3488 GTDTLIGGAGNDFLNGAGGNDTVVGGAGNDTMMATDGNDVFQFAAGFGND 3537 G D L G GND L+G G+D + GG GND ++ GN+ G G+D Sbjct: 754 GNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNY--LNGGDGDD 801 Score = 48.8 bits (116), Expect = 4e-07 Identities = 45/214 (21%), Positives = 66/214 (30%), Gaps = 51/214 (23%) Query: 916 IIISGDGDDTVYGDAGDDVLEGGAGNDAVLGGAGDDIITDSFGDNR-----------LEG 964 GDGDD V+ AG + G G+D V D G L G Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGG 672 Query: 965 NA-------------------------------GNDVIVAGSMLAAGNLILGGDGQDFII 993 + + L + ++G D Sbjct: 673 DVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFF 732 Query: 994 TTEDISTTFGGQGDDFILGAKTNLPPTGNEGDDWIEKGTQDGAPGDNFAPLLGDEVVGND 1053 ++ G GDD I G N G++G+D + G GD+ L G + GND Sbjct: 733 GSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTL-----SGGNGDDQ--LYGGD--GND 783 Query: 1054 IFVGGGGFDEMIGEGGDDIFVGSDAQDKMDGMSG 1087 +G G + + G GDD F + + G Sbjct: 784 KLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFG 817 Score = 48.4 bits (115), Expect = 6e-07 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 892 GPDSNYLHYTGEDHVVLGGTSGNDIIISGDGDDTVYGDAGDDVLEGGAGNDAVL--GGAG 949 G D + VL G GND + +G D + G GDD+L+GG GND G G Sbjct: 799 GDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYG 858 Query: 950 DDIITDSFGDN 960 II D G Sbjct: 859 HHIIDDDGGKE 869 Score = 39.6 bits (92), Expect = 3e-04 Identities = 83/346 (23%), Positives = 123/346 (35%), Gaps = 65/346 (18%) Query: 2408 QVVFRDSPLTAGPDSNYIRYAGA-EHIVLGGTNG-DDILVSSEGDDTVWGDAGNDRIEGG 2465 + F LT G + R +G E+I G D V D D N Sbjct: 542 LLKFVTPLLTPGEEIRERRQSGKYEYITELLVKGVDKWTVKGVQDKGAVYDYSNLIQHAS 601 Query: 2466 DGNDQLRGGAGDDIISDMG-GDDNIQGGDGNDVLHGGNGVNLIIGGFGNDFIVT--GEDA 2522 GN+Q R I S +G GDD + G+ ++ G G +++ + +T G A Sbjct: 602 VGNNQYREIR---IESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKA 658 Query: 2523 SEA--------IGGQGNDFILGSKANEQDMGNEGDDWIEKGTSDGAP--GDNFDPLGN-- 2570 +EA +GG K E +G + + + + G N N Sbjct: 659 TEAGNYTVTRVLGGDVKVLQEVVKEQEVSVGKRTEK-TQYRSYEFTHINGKNLTETDNLY 717 Query: 2571 --DPIIG---NDVFIGGNENDKFNGEGGDDIMVGSLGFGDRYIGGSGYDWATFKGLAQGV 2625 + +IG D F G D F+G GDD++ G+ G DR G G D L+ G Sbjct: 718 SVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDG-NDRLYGDKGNDT-----LSGGN 771 Query: 2626 TIDYSDRFFDVPPVPGSGASALVRFDIMEGLSGSAHGDFLRGDNEDAASLPTNGATGSVL 2685 D G G L+ L+G GD +D + N +VL Sbjct: 772 GDDQLY--------GGDGNDKLIGVAGNNYLNG--------GDGDDEFQVQGNSLAKNVL 815 Query: 2686 TNISLINGLSSLLAAGATFYDGGNIILGGSGSDLIEGRGGDDILDG 2731 G + + G G+DL++G GDD+L G Sbjct: 816 FGGK-----------------GNDKLYGSEGADLLDGGEGDDLLKG 844 Score = 37.3 bits (86), Expect = 0.001 Identities = 42/198 (21%), Positives = 62/198 (31%), Gaps = 51/198 (25%) Query: 934 VLEGGAGNDAVLGGAGDDIITDSFGDNRL---EGNAGNDVIVAGSMLAAGNLIL------ 984 G G+D V AG I G + + + + G I AGN + Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGG 672 Query: 985 ---------------------------------GGDGQDFIITTEDISTTFGGQGDDFIL 1011 G + G D Sbjct: 673 DVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFF 732 Query: 1012 GAKTNLPPTGNEGDDWIEKGTQDGAPGDNFAPLLGDEVVGNDIFVGGGGFDEMIGEGGDD 1071 G+K G +GDD I +G G++ L GD+ GND GG G D++ G G+D Sbjct: 733 GSKFTDIFHGADGDDLI-----EGNDGNDR--LYGDK--GNDTLSGGNGDDQLYGGDGND 783 Query: 1072 IFVGSDAQDKMDGMSGFD 1089 +G + ++G G D Sbjct: 784 KLIGVAGNNYLNGGDGDD 801
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.017 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 11/69 (15%) Query: 36 PQQEDVTGLKAKVEELLGEKKAAEKARREAEDKARSEAE---EAARKAGDVEGLEKSWSE 92 Q +V ++ +E + E A E E+KA+ E E E + V S Sbjct: 1080 TQTNEVAQSGSETKET-QTTETKETATVEKEEKAKVETEKTQEVPKVTSQV-------SP 1131 Query: 93 KYARREAEL 101 K + E Sbjct: 1132 KQEQSETVQ 1140
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 24.8 bits (54), Expect = 0.024 Identities = 12/47 (25%), Positives = 19/47 (40%) Query: 11 NKPTKVRLDEAADDLLSAMARFKRTQKAVLAREILERGLDQMMQELN 57 K+ LDE + + +K+ K + E L Q +ELN Sbjct: 366 YDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELN 412
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 55.5 bits (133), Expect = 2e-10 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 8/156 (5%) Query: 189 EAEQAELARLRREAEERAEQDRIRLAQEA-AVEAER-QRVAQEQQAAREAAARREQELLD 246 QA++ + EE A D + A A +E + VA+ + + + EQ+ + Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATE 1060 Query: 247 QAAAQEREAENQRLQLKLQAEQAERARIQAEADRVAAEQRMEQERQDAARRQEEAAEQAR 306 A A+ + +K + E A+ +E + E + + + E+ + Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQ 1120 Query: 307 QEERRRADAAAAEILRQ------QEARERDQAHKAK 336 + + + + + + + ARE D K Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIK 1156 Score = 39.7 bits (92), Expect = 2e-05 Identities = 26/217 (11%), Positives = 61/217 (28%), Gaps = 22/217 (10%) Query: 161 EEFEAEAANAKDKVLTTLRAALLKRE-----QFEAEQAELARLRREAEERAEQDRIRLAQ 215 +E + N +D TT + + +E + + E+A+ E +E + A Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 216 EAAVEAERQRVAQEQQAAR---EAAARREQELLDQAAAQ------------EREAENQRL 260 E + + Q+ + + + ++EQ Q A+ E +++ Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTT 1165 Query: 261 QLKLQAEQAERARIQAEADRVAAEQRMEQERQDAARRQEEAAE-QARQEERRRADAAAAE 319 Q + + ++ ++ + E + Sbjct: 1166 ADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRR 1225 Query: 320 ILRQQEARERDQAHKAK-VMGEAKTALMSLNITEELA 355 +R + A L S N L+ Sbjct: 1226 SVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLS 1262 Score = 35.4 bits (81), Expect = 4e-04 Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 18/136 (13%) Query: 201 EAEERAEQDRIRLAQEAAVEAERQRVAQEQQAAREAAARREQELLDQAAAQEREAENQRL 260 E E+R + + V E A E + A A E Sbjct: 984 EVEKR--NQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSE------ 1035 Query: 261 QLKLQAEQAERARIQAEADRVAAEQRMEQERQDAARRQEEAAEQARQEERRRADAAAAEI 320 E Q ++ EQ+ + + E A++A+ +A+ E+ Sbjct: 1036 ----TTETVAENSKQES----KTVEKNEQDATETTAQNREVAKEAKSNV--KANTQTNEV 1085 Query: 321 LRQQEARERDQAHKAK 336 + + Q + K Sbjct: 1086 AQSGSETKETQTTETK 1101
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 114 bits (287), Expect = 5e-37 Identities = 34/89 (38%), Positives = 55/89 (61%) Query: 5 TKAEMAERLYEELGLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQRPGR 64 K ++ ++ E L K+++ V+ F + L + E+V+L GFGNF++R++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 65 NPKTGEEIPITARRVVTFRPGQKLKARVE 93 NP+TGEEI I A +V F+ G+ LK V+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.1 bits (88), Expect = 2e-04 Identities = 45/269 (16%), Positives = 84/269 (31%), Gaps = 24/269 (8%) Query: 189 NERKRLEAQLREDEPVVRAAPMATEKREPAKPALRE--RIFKREASPAPVVEPREPTLGR 246 NE + ++ +E + EK E AK + + K + +P E E + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142 Query: 247 -EPAAPPREPTLAREPVVPRDAVVPRAQPA---TPMIVPPAADKAPEPSKRVMKEKQAPL 302 EPA +EP + QPA + + P + + + P Sbjct: 1143 AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGN--SVVENPE 1200 Query: 303 FVDSAVEGTLPSISILDPAEQKKIEYSPESLAGVGQLLEIKLKEFGVEVAVDSIHPGPVI 362 A T P+++ + K S+ V +E V Sbjct: 1201 NTTPAT--TQPTVN--SESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTN 1256 Query: 363 TRYEIQPAAGVKVSRIANLAKDLARSLAVTSVRVVEVIPGKTTVGIEIPNENR-----QM 417 T + A N+ K +++ ++ + G+ V + + N+ Q Sbjct: 1257 TNAVLSDARAKAQFVALNVGKAVSQHISQLEMNN----EGQYNVWVSNTSMNKNYSSSQY 1312 Query: 418 VRFSEVLATPQFDEQKSPVTLALGHDIGG 446 RFS Q + T++ +GG Sbjct: 1313 RRFSSKSTQTQLGWDQ---TISNNVQLGG 1338
>SSBTLNINHBTR#Streptomyces subtilisin inhibitor signature. Length = 144 Score = 27.9 bits (61), Expect = 0.049 Identities = 25/96 (26%), Positives = 32/96 (33%), Gaps = 9/96 (9%) Query: 79 GGAAAAPAAAAAPAAAPAAAAADAGEDDPVAAPAARKLAEENGIDLATVAGTGKGGRVTK 138 G + A+PA A A AP+A G + A A + T A T G Sbjct: 24 GASLASPATAPASLYAPSALVLTVGHGESAATAAPLRAV------TLTCAPTASGTHPAA 77 Query: 139 EDVVAAVANKKSAPAAAPAAKPAAAA---APVVVAA 171 A + P+A A APVVV Sbjct: 78 AAACAELRAAHGDPSALAAEDSVMCTREYAPVVVTV 113
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.5 bits (79), Expect = 9e-04 Identities = 62/337 (18%), Positives = 110/337 (32%), Gaps = 44/337 (13%) Query: 67 VTGY-LARPLGGILMAHFADHLGRKRVFSLSILMMALPCLLIGVMPTYADIGYAAPLILL 125 T + L +G + +D LG KR+ I++ ++ +G++ +L+ Sbjct: 55 NTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVI-------GFVGHSFFSLLI 107 Query: 126 ALRILQGAAVGGEVPSAWTFVAEHAPAGRRGYALGFLQA----GLTFGYLLGALTA---- 177 R +QGA VA + P RG A G + + G G +G + A Sbjct: 108 MARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIH 167 Query: 178 --------------TLLAQLFTPQEI-----LDYAWRYPFLLGGVFGVIGVWLRRW--LS 216 +E+ D +G VF ++ L Sbjct: 168 WSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLI 227 Query: 217 ETPVFLALRARQEQPVKFPLRRVLSEHRQALIPAALLTCVLTSAVVVLVVITPTVMQQRF 276 + + + + + V P + L ++ V V + P +M+ Sbjct: 228 VSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVH 287 Query: 277 GMS---AGHTFALSSVGIVFLNIGCVLAGLLVDRVGAWRALMLYSLLLPLG-IGALYASL 332 +S G G + + I + G+LVDR G L + L + + A + Sbjct: 288 QLSTAEIGSVIIF--PGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLE 345 Query: 333 VGQWGMTW-LAYALAGLSCGVVGVVPSVMVGLFPAEI 368 W MT + + L GLS + V L E Sbjct: 346 TTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEA 382
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.004 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 7 RILIADAHPCQRLQLERLLNGLGYYRIAPVDSFEELQRLVQCALQPFHLLLGNIELASHA 66 IL+AD R L + L+ G Y + + L R + A L++ ++ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAG-YDVRITSNAATLWRWI--AAGDGDLVVTDVVMPDEN 61 Query: 67 GVDL 70 DL Sbjct: 62 AFDL 65
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 58.7 bits (142), Expect = 2e-11 Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 36/222 (16%) Query: 14 LDVCMRPLTNTRRRVLLTGLGLLGLGSLLAWKALPYGAQPLSTVAVTRADIESSVTALGT 73 L++ P++ R V +G L + L +E TA G Sbjct: 46 LELIETPVSRRPRLVAYFIMGFLVIA--FILSVL--------------GQVEIVATANGK 89 Query: 74 LQPR-RYVDVGAQASGQIHKLHVEVGDSVRKGQLLVEIDPSTQQARLDAGRFSIDNLKAQ 132 L R ++ + + ++ V+ G+SVRKG +L+++ A D + L+A+ Sbjct: 90 LTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL--GAEADTLKTQSSLLQAR 147 Query: 133 LAEQRAQYLLAQQQLKRQRDL-----AAAGATRDEDVQTAAAQLKVTQARIDMFLAQIRQ 187 L + R Q L +L + +L +E+V + + + + + Q Q Sbjct: 148 LEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLI---KEQFSTWQNQKYQ 204 Query: 188 AQASLRSDEAELGYTRIYAPMDGTVVAVDAREGQTLNAQQQT 229 + +L AE + ++ E + + + Sbjct: 205 KELNLDKKRAER---------LTVLARINRYENLSRVEKSRL 237 Score = 53.7 bits (129), Expect = 6e-10 Identities = 28/183 (15%), Positives = 60/183 (32%), Gaps = 39/183 (21%) Query: 116 QARLDAGRFSIDNLKAQLAEQRAQYLLAQQQLKRQRDLAAAGA-------TRDEDVQTAA 168 + LD R + A++ + + +L L A ++ A Sbjct: 206 ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 169 AQLKVTQARIDMFLAQIRQAQASLR-----------------------------SDEAEL 199 +L+V +++++ ++I A+ + +E Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325 Query: 200 GYTRIYAPMDGTVVAVDAR-EGQTLNAQQQTPLILRIAKLSPMTVWAQVSEADIGKVKPG 258 + I AP+ V + EG + + L++ + + + V A V DIG + G Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAE--TLMVIVPEDDTLEVTALVQNKDIGFINVG 383 Query: 259 MTA 261 A Sbjct: 384 QNA 386
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.6 bits (230), Expect = 5e-24 Identities = 39/121 (32%), Positives = 61/121 (50%) Query: 2 HVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGLPDEDGLK 61 +L+ +DD I + L+ G V NAA + A D+++ D+ +PDE+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAG 121 LL R+++ LPVLV++A++ + + GA DYL KPFDL EL + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 R 122 R Sbjct: 125 R 125
>PF07132#Harpin protein (HrpN) Length = 356 Score = 31.6 bits (71), Expect = 0.005 Identities = 19/56 (33%), Positives = 30/56 (53%) Query: 84 IATQMAMIVAGSAVTGGMLGAGIGAFAGGAGAIPGGVAGTAIGFKVSGWILGALGI 139 IA Q++ I+ G M+G G+G GG G+ GG+ G +G + G + +LG Sbjct: 47 IAEQLSDIMTTMMFMGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGS 102
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 506 bits (1305), Expect = e-179 Identities = 177/488 (36%), Positives = 255/488 (52%), Gaps = 10/488 (2%) Query: 5 TKILLIDDDSARRRDLAVVLNFLGEENLACASHDWQQAVEPLSSSREVLCVLIGTVNAPG 64 IL+ DDD+A R L L+ G + ++ +++ + V+ V Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNA--ATLWRWIAAG-DGDLVVTDVVMPDE 60 Query: 65 NLLGLLKTVAAWDEFLPVLLLGEISSAELP-EDLRRRVLSNLEMPPSYSQLLDSLHRAQV 123 N LL + LPVL++ ++ + + L P ++L+ + RA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 124 YREMYDQARERGRQREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKEVV 183 + R + + LVG S A+Q + +++ ++ TD +++I GESGTGKE+V Sbjct: 121 EP----KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV 176 Query: 184 ARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLF 243 AR LH + KRR PFV +N AIP +L+ESELFGHEKGAFTGA T GRFE A GGTLF Sbjct: 177 ARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLF 236 Query: 244 LDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLESMIEDGTFREDL 303 LDEIGDMP+ Q +LLRVLQ+ + VG DVRI+AAT+K+L+ I G FREDL Sbjct: 237 LDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDL 296 Query: 304 YYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSASIMSLCRHGWPGNVR 363 YYRLNV P+ + PLR+R EDIP L+ + + E E RF+ ++ + H WPGNVR Sbjct: 297 YYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVR 356 Query: 364 ELANLVERMAIMHPYGVIGVSELPKKFRY-VDDEDEQMVDSLRSDLEERVAINGHTPN-F 421 EL NLV R+ ++P VI + + R + D + + L A+ + F Sbjct: 357 ELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYF 416 Query: 422 SNHAMLPPEGLDLKDYLGSLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGMS 481 ++ P L +E LI AL G +AA+ L + R TL +K+R+ G+S Sbjct: 417 ASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476 Query: 482 RQGGEGQA 489 A Sbjct: 477 VYRSSRSA 484
>FLAGELLIN#Flagellin signature. Length = 507 Score = 30.4 bits (68), Expect = 0.015 Identities = 42/327 (12%), Positives = 93/327 (28%), Gaps = 15/327 (4%) Query: 34 QINTQTLKATTTLSSIGKIQAALDAFRGALTNMTDTNSFGGLSLKSSDEKVA-------- 85 +++ Q T + S + IQ + + +++ F G+ + S D ++ Sbjct: 93 ELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDNQMKIQVGANDG 152 Query: 86 -TVTMGTGAANGSFKLIVDKLATASKVSTKVYANGAGSVVNPGSTPTTLTMTQNGKAYDL 144 T+T+ + + K +T + V T Sbjct: 153 ETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSG 212 Query: 145 SVPAGATLQQVRDSINSQFGVAGLSANVLTDANGSRLVVTSTKMGEGSDITLSGNSGIDT 204 +V T V D + L+ + + L T+ ++ + Sbjct: 213 AVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGG 272 Query: 205 GYTVVEEPADAEYTLDGVAMKSKTNDINDAVSGLNIKLVGTSPTNATSGEKTATILSLTT 264 + +T+D ++ ++G + L T + AT+ S Sbjct: 273 KEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKN 332 Query: 265 SSATLKSGLKGFIDTY------NALLTVMNAETKVTKNADGSMTAAALTGDATMRTLMTS 318 ++ +G F D + L NA +K A + + Sbjct: 333 VYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKT 392 Query: 319 IREELNAVSGNGTLKSLAAFGVTSAQD 345 + + A + + AA S + Sbjct: 393 MFIDKTASGVSTLINEDAAAAKKSTAN 419
>FLAGELLIN#Flagellin signature. Length = 507 Score = 179 bits (455), Expect = 1e-52 Identities = 153/508 (30%), Positives = 230/508 (45%), Gaps = 27/508 (5%) Query: 2 ALTVNTNIASITTQGNLTKASTAQTTSMQRLSSGLRINSAKDDAAGLQISNRLTSQINGL 61 A +NTN S+ TQ NL K+ ++ +++++RLSSGLRINSAKDDAAG I+NR TS I GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAVKNANDGISIAQTAEGAMQASTDILQKMRTLALSSATGSLSADDRKSNNDEYQALTA 121 QA +NANDGISIAQT EGA+ + LQ++R L++ + G+ S D KS DE Q Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELTRISQTTTFGGQKLLDGSYGTKAIQVGANANETINLTLDNVAANNIG----------- 170 E+ R+S T F G K+L IQVGAN ETI + L + ++G Sbjct: 121 EIDRVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 171 ------SQQVKSVAITPSATGVDAGTVTVTGNGQTKDVTVTAGDSAKTIAANLNGAIGGL 224 K+V + +G T K NG + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 225 TATASTEVQFSVDKTAIAGVTAGPAANFELTVGSQKVSFVGVTDTASLADQLKSNAAKLG 284 A +T V + AG A + G + +F T ++ + ++ Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKV 299 Query: 285 ISVNYDESNGGSLSVKSDTGENLVFGAGDAAAQAGIKVNAKDGNGEYAASGTALTAADLY 344 + E +++ + N+ ++ V + + +DL Sbjct: 300 STTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLE 359 Query: 345 VTGAISLDSAKGYSLTGGG---------VTKLFSAAGTAATSVKTTIADTDVTDATKAQN 395 A+ +S + + A+ V T I + N Sbjct: 360 ANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTAN 419 Query: 396 ALAVIDKAIGSIDSVRSGLGATQNRLQTTVDNLQNIQKNSTAARSTVQDVDFASETAELT 455 LA ID A+ +D+VRS LGA QNR + + NL N N +ARS ++D D+A+E + ++ Sbjct: 420 PLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMS 479 Query: 456 KQQTLQQASTAILSQANQLPSSVLKLLQ 483 K Q LQQA T++L+QANQ+P +VL LL+ Sbjct: 480 KAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 62.0 bits (150), Expect = 2e-12 Identities = 88/498 (17%), Positives = 161/498 (32%), Gaps = 17/498 (3%) Query: 18 KNFSSMNKTNDQITSGIRIQTAADDPVGAARLLLLQQQQALLDQYSGNINTVSNSLLQEE 77 K+ SS++ ++++SG+RI +A DD G A L Q S N N + E Sbjct: 19 KSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQTTE 78 Query: 78 SVLSTINDAMQRASELAIRAGGAGVTDSDRTAISTELKEIEANIFGLLNSRDANGDYMFG 137 L+ IN+ +QR EL+++A +DSD +I E+++ I + N NG + Sbjct: 79 GALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLS 138 Query: 138 GSKSTTPPYVRNSDGTYSYHGDQTQLSLQVSDTLNLATNDTGFSIFDSASNKSRTQSTLL 197 N T + + + D N+ +S K+ T Sbjct: 139 QDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTY 198 Query: 198 VPATDDGVVGVSSGLMTSSTSYNNSFTAGQPYKLTFTSATQYTITDANGRDVTSETPTNG 257 + V V+SG + + T+ + + T N V T Sbjct: 199 AVGANKYRVDVNSGAVVTDTTAPTV---PDKVYVNAANGQLTTDDAENNTAVDLFKTTKS 255 Query: 258 TFDSKTEGANRIALRGVEFEITVTLEEGADADAAVAGREFSLEARPDSFNATRNGNNTSS 317 T + A A++G + T + G + S + Sbjct: 256 TAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGND---GNGKVSTTINGEKVTLTV 312 Query: 318 AQITSSSVTDEAAYRSTFPSNGAVIKFTGPGAYELYAQPLTADSKAIATGTFTAPSLTVA 377 A IT+ + +AA + + + + S A S Sbjct: 313 ADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITV 372 Query: 378 GVTYQVAGSPEAGDQFAVTANTHQNQNVLETISQLRAALDTPVTGAGSANALKDAAASAI 437 A + A A A A K + A+ + Sbjct: 373 NGAEYTANAAGDKVTLAGKTMFIDK-----------TASGVSTLINEDAAAAKKSTANPL 421 Query: 438 ANLASAREQVDITRGSIGARGNSLEIQRQENTSLGLANKTTQNAIGNTDMSQAAITLTLQ 497 A++ SA +VD R S+GA N + + + ++ I + D + ++ Sbjct: 422 ASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKA 481 Query: 498 QAMLEASQLAFSRISQLS 515 Q + +A ++ +Q+ Sbjct: 482 QILQQAGTSVLAQANQVP 499
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 217 bits (554), Expect = 9e-65 Identities = 143/483 (29%), Positives = 245/483 (50%), Gaps = 22/483 (4%) Query: 2 SSLISIGLSGLSASQAALSVTSNNIANAATSGYSRQQTIQAAGASHNIGAGFLGTGTTLA 61 SSLI+ +SGL+A+QAAL+ SNNI++ +GY+RQ TI A S G++G G ++ Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 62 DVRRIYSSYLDNQLQTATSLQADSVAFQDQITSIDKLLADRDTGISSVLTAFFSALQTAA 121 V+R Y +++ NQL+ A + + A +Q++ ID +L+ + +++ + FF++LQT Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 122 AKPGDVASRQLLLTQAQTLSNRFNAVSTQLTQQNATINSQLDTMAGQVNKLTASIAEYNK 181 + D A+RQ L+ +++ L N+F L Q+ +N + Q+N IA N Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 182 QIA--AASGTGNTPNSLLDARSEAVRQLNELVGVTVQER-DGNYDVYLGSGQSLVTGNKA 238 QI+ G G +PN+LLD R + V +LN++VGV V + G Y++ + +G SLV G+ A Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240 Query: 239 NTLSVEPGAADKSQASLRINYESFSSDVTSV----VTGGAIGGLLRYRQDVLTPSMNELG 294 L+ P +AD S+ + Y ++ + + G++GG+L +R L + N LG Sbjct: 241 RQLAAVPSSADPSRT--TVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLG 298 Query: 295 RVALVVADSINSQLGQGLDANGQFGSSLFSSINSATALAQRSLASSNNSSGSGNLDVTIA 354 ++AL A++ N+Q G DANG G F+ + + ++ + + G + T+ Sbjct: 299 QLALAFAEAFNTQHKAGFDANGDAGEDFFA-------IGKPAVLQNTKNKGDVAIGATVT 351 Query: 355 NSGALTTYDYEVKFTSANQYSVRRSDGTDMGSFDLNANPAPVIDGFSLSLNGGGLAAGDS 414 ++ A+ DY++ F NQ+ V R + +AN DG L+ G A DS Sbjct: 352 DASAVLATDYKISF-DNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTF-TGTPAVNDS 409 Query: 415 FKVIPTRAAAGSITTTLTDANKLAFAGPISATSGSGNSGTGTITQPTLGESLDIYGGADT 474 F + P A ++ +TD K+A A + +G+S +S G Sbjct: 410 FTLKPVSDAIVNMDVLITDEAKIAMA----SEEDAGDSDNRNGQALLDLQSNSKTVGGAK 465 Query: 475 ALI 477 + Sbjct: 466 SFN 468 Score = 79.6 bits (196), Expect = 1e-17 Identities = 60/180 (33%), Positives = 82/180 (45%), Gaps = 26/180 (14%) Query: 522 NKLSIAVPMLDAAGNPIKDASGNPRTFSVETTIGGSPAANDSFTL--------------- 566 N+ + + DA+G +E T G+PA NDSFTL Sbjct: 368 NQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLIT 427 Query: 567 --------SFNADGKADNRNATALLGLQTKSTVNTGSGGGTSFTSAYASLVERVGAKANQ 618 S G +DNRN ALL LQ+ S GG SF AYASLV +G K Sbjct: 428 DEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTV---GGAKSFNDAYASLVSDIGNKTAT 484 Query: 619 ATIDTTATEAVLKSASESRSAVSGVNLDDEAASLVKFQHYYTASSQIIKAAQETFSTLIN 678 + V+ S + ++SGVNLD+E +L +FQ YY A++Q+++ A F LIN Sbjct: 485 LKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 146 bits (370), Expect = 3e-43 Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 1/163 (0%) Query: 222 DSDEFVATMLPMAEQAAKRIGIDPRYLVAQAALETGWGKSVMRNSDGSSSHNLFGIKATG 281 DS F+A + A+ A+++ G+ ++AQAALE+GWG+ +R +G S+NLFG+KA+G Sbjct: 148 DSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASG 207 Query: 282 SWQGEQARAITSEFRDGQFVKETAAFRSYDSYQDSFHDLVSLLQSNSRYQDALDSADNPE 341 +W+G T+E+ +G+ K A FR Y SY ++ D V LL N RY A+ +A + E Sbjct: 208 NWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYA-AVTTAASAE 266 Query: 342 QFARELQKAGYATDPGYARKIISIAQQMQSTPQYAMAGRTTNL 384 Q A+ LQ AGYATDP YARK+ ++ QQM+S + N+ Sbjct: 267 QGAQALQDAGYATDPHYARKLTNMIQQMKSISDKVSKTYSMNI 309 Score = 70.9 bits (173), Expect = 7e-16 Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 15/191 (7%) Query: 19 LNRLSALKHGDRDSEANVRKVAQEFESLFISEMLKASRKASDVLADDNPMNTETVKQYRD 78 LN L A K G+ D AN+R VA++ E +F+ MLK+ R D L D ++E + Y Sbjct: 18 LNELKA-KAGE-DPAANIRPVARQVEGMFVQMMLKSMR---DALPKDGLFSSEHTRLYTS 72 Query: 79 MYDQQLAVSMSREGGGIGLQDVLVRQLTKGRSASVNTSPFPRVDNSGPALWGNKVAEPVH 138 MYDQQ+A M+ G G+GL +++V+Q+T + ++P + + + Sbjct: 73 MYDQQIAQQMT-AGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLETVVRYQNQALSQ 131 Query: 139 ATDASTTRNDVAAL--NSR----RLALPSKLTDRLLAGIVPSAATTNTAAVPARDGQ-QV 191 + RN +L +S+ +L+LP++L + VP AA+ + GQ Q+ Sbjct: 132 LVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSG--VPHHLILAQAALESGWGQRQI 189 Query: 192 AKAFAVPDNGL 202 + P L Sbjct: 190 RRENGEPSYNL 200
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 447 bits (1151), Expect = e-160 Identities = 166/373 (44%), Positives = 224/373 (60%), Gaps = 10/373 (2%) Query: 2 TMFNARQLIAATLLLSCAFAAQAERLKDIASISGVRSNQLIGYGLVVGLNGTGDQTTQTP 61 + A A L + A R+KDIAS+ R NQLIGYGLVVGL GTGD +P Sbjct: 6 IIAAALVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSP 65 Query: 62 FTLQTFNNMLSQFGIKVPAGSGNVQLKNVAAVSVHADLPAFAKPGQVVDITVSSIGNSKS 121 FT Q+ ML GI G N KN+AAV V A+LP FA PG VD+TVSS+G++ S Sbjct: 66 FTEQSMRAMLQNLGITTQGGQSNA--KNIAAVMVTANLPPFASPGSRVDVTVSSLGDATS 123 Query: 122 LRGGSLLMTPLKGIDGNVYAIAQGNLVVGGFDAEGRDGSKITVNVPSAGRIPGGASVERA 181 LRGG+L+MT L G DG +YA+AQG L+V GF A+G D + +T V ++ R+P GA +ER Sbjct: 124 LRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERE 182 Query: 182 VPSGFNQGNTLTLNLNRPDFTTAKRIVDKVNDL----LGPGVAQAVDGGSVRVSAPMDPS 237 +PS F L L L PDF+TA R+ D VN G +A+ D + V P + Sbjct: 183 LPSKFKDSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VA 241 Query: 238 QRVDYLSILENLEIDPGQAVAKVIINSRTGTIVIGQNVKVSPAAVTHGSLTVTITEDPIV 297 ++ +ENL ++ AKV+IN RTGTIVIG +V++S AV++G+LTV +TE P V Sbjct: 242 DLTRLMAEIENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQV 300 Query: 298 SQPGAFSNGQTAVVPRSRVNAEQEAKPMFKFGPGTTLDEIVRAVNQVGAAPGDLMAILEA 357 QP FS GQTAV P++ + A QE + G L +V +N +G ++AIL+ Sbjct: 301 IQPAPFSRGQTAVQPQTDIMAMQEGSKVA-IVEGPDLRTLVAGLNSIGLKADGIIAILQG 359 Query: 358 LKQAGALQADLIV 370 +K AGALQA+L++ Sbjct: 360 IKSAGALQAELVL 372
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 194 bits (495), Expect = 1e-64 Identities = 83/221 (37%), Positives = 112/221 (50%), Gaps = 15/221 (6%) Query: 16 LAGCVAPTPKPNDPYYAPVLPRTPLPAAANNGSIYQAGF-----EQNLYSDRKAFRVGDI 70 L GC P P P P NGSI+Q+ Q L+ DR+ +GD Sbjct: 19 LTGCAWIPSTPLVQGATSAQP-VPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDT 77 Query: 71 ITITLNEKTSASKNAGSQIQKNSKADIGLTSLFGSTPN-TNNPFGGGDLSLEAGYNGERA 129 +TI L E SASK++ + ++ K + G F + P FG +EA G Sbjct: 78 LTIVLQENVSASKSSSANASRDGKTNFG----FDTVPRYLQGLFGNARADVEAS--GGNT 131 Query: 130 TKGDSKATQGNTLTGSITVTVAEVLPNGIIAVRGEKWLTLNTGEELVRIAGMVRADDIAT 189 G A NT +G++TVTV +VL NG + V GEK + +N G E +R +G+V I+ Sbjct: 132 FNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISG 191 Query: 190 DNTVPSTRVADARITYSGTGSFADASQPGWLDRFFI--SPL 228 NTVPST+VADARI Y G G +A GWL RFF+ SP+ Sbjct: 192 SNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 44.6 bits (105), Expect = 2e-07 Identities = 12/47 (25%), Positives = 21/47 (44%) Query: 213 TTQQQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQMLSFVTQ 259 Q S V+ EE N+ Q+ Y N++V+ TA+ + + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 39.6 bits (92), Expect = 9e-06 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 14/77 (18%) Query: 5 LWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDSELPS 64 + A +GL+A L SNN+++ + G+ R + +S L + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTT--------------IMAQANSTLGA 49 Query: 65 GLQVGTGVRIVGTQKSF 81 G VG GV + G Q+ + Sbjct: 50 GGWVGNGVYVSGVQREY 66
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 46.1 bits (109), Expect = 1e-07 Identities = 29/127 (22%), Positives = 37/127 (29%), Gaps = 1/127 (0%) Query: 106 LGLVTLAVAPAAASAAPAPAPAPAPAPAPAPAPAPAVAALAPAAPAVPAPAEAPAAVAAA 165 GL+ +V AP P APA P P P P P Sbjct: 30 AGLLYTSVHQVIELPAP-AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPK 88 Query: 166 PAPAVVEPAPAKAEVAPAPVVAAEPAPAPVAETPVAAPVAPPVPAPADAVAAAPTSDFGR 225 AP V+E K + P PV E V APA ++ T+ + Sbjct: 89 EAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSK 148 Query: 226 AVVLQNR 232 V Sbjct: 149 PVTSVAS 155 Score = 45.7 bits (108), Expect = 2e-07 Identities = 30/122 (24%), Positives = 32/122 (26%), Gaps = 11/122 (9%) Query: 113 VAPAAASAAPAPAPAPAPAPAPAPAPAPAVAALAPAAPAVPAPAEAPAAVAAAPAPAVVE 172 VAPA A P P P P P P P A + P P P Sbjct: 55 VAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP---------KPKPKPKP 105 Query: 173 PAPAKAEVAPAPVVAAEPAPAPVAETPVAAPVAPPVPAPADAVAAAPTSDFGRAVVLQNR 232 K E V E PA E AP P A + TS L Sbjct: 106 KPVKKVEQPKRDVKPVESRPASPFENT--APARPTSSTATAATSKPVTSVASGPRALSRN 163 Query: 233 NL 234 Sbjct: 164 QP 165 Score = 42.7 bits (100), Expect = 2e-06 Identities = 16/89 (17%), Positives = 21/89 (23%) Query: 115 PAAASAAPAPAPAPAPAPAPAPAPAPAVAALAPAAPAVPAPAEAPAAVAAAPAPAVVEPA 174 P P AP P P P P P P E+ A + Sbjct: 80 PEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTS 139 Query: 175 PAKAEVAPAPVVAAEPAPAPVAETPVAAP 203 PV + P ++ P Sbjct: 140 STATAATSKPVTSVASGPRALSRNQPQYP 168 Score = 38.4 bits (89), Expect = 5e-05 Identities = 23/104 (22%), Positives = 31/104 (29%), Gaps = 5/104 (4%) Query: 114 APAAASAAPAPAPAPAPAPAP-----APAPAPAVAALAPAAPAVPAPAEAPAAVAAAPAP 168 P P P P P P P P P V P V + PA Sbjct: 68 PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPAS 127 Query: 169 AVVEPAPAKAEVAPAPVVAAEPAPAPVAETPVAAPVAPPVPAPA 212 APA+ + A ++P + + + P PA A Sbjct: 128 PFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQYPARA 171
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 28.5 bits (63), Expect = 0.035 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 47 GSGNGKIAAALIAGGIGAYVGNRIGHMLDEKDQQALALRTQEVLSQQQATASAQPVT 103 G G G +A ++AGGIGA V + H ++ +Q T V+ QQ V Sbjct: 363 GIGYGLSSALIVAGGIGAGVTTAL-HRRNQPAEQTTTTTTHTVVQQQTGGIPQHKVA 418
>PF06776#Invasion associated locus B Length = 214 Score = 30.3 bits (68), Expect = 0.005 Identities = 15/142 (10%), Positives = 36/142 (25%), Gaps = 30/142 (21%) Query: 110 LKDKYSENWSLRCRKDEMNDTHYCSMTREALTI--GAFGASSRFVSVGSEYFPGSSIAV- 166 ++ + +W +RC C++ + + G + + + + Sbjct: 76 VRSVH-GDWQIRCDTPPGAKAEQCALIQSVVAEDRSNAGLTVIILKTADQKSKLMRVVAP 134 Query: 167 -----------RVDKQEPITAPANPGFTTSQET----------ALIAAMSTGTSVLTRYV 205 ++D + A F L+ + T + Sbjct: 135 LGVLLPSGLGLKLDNVDVGRAG----FVRCLPNGCVAEVVMDDKLLGQLRTAKTATFIIF 190 Query: 206 QWPYEANKDKKISLFGFKSALA 227 + P E +SL G Sbjct: 191 ETPEEGIG-FPLSLNGIGEGYD 211
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.0 bits (64), Expect = 0.018 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 10/108 (9%) Query: 21 RDEFTRQQLRRASELDKGAAALGAIENSACLGILSRSLLEQLITSLWGIRSIENAESQ-- 78 RD + + +ELDK AALG +N A L +++RSL ++ + ++ + +Q Sbjct: 83 RDAEKKLEASVQAELDKADAALGPAKNLAPLDVINRSL--TIVGNALQQKNQKLLLNQKK 140 Query: 79 ---MGAGSAELAKALRMNLKAGTAKILDRETGEDVTAKFLESEQAKQT 123 +GA + A + +A ++ G + +FL+ E T Sbjct: 141 ITSLGAKNFLTRTAEEIGEQAVREGNIN---GPEAYMRFLDREMEGLT 185
>INTIMIN#Intimin signature. Length = 939 Score = 28.5 bits (63), Expect = 0.033 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 115 STGGGASNAAPDAAAGAAAQQPAASSEPGDPAKEKLYYDAAFDLIKQKDFDKASQAFNAF 174 S SN D A AAQQ A+ L D A D ++AS A+ Sbjct: 149 SPDVTKSNMTDDKALNYAAQQAASLGS--QLQSRSLNGDYAKDTALGIAGNQASSQLQAW 206 Query: 175 LRKYPNSQ 182 L+ Y ++ Sbjct: 207 LQHYGTAE 214
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 114 bits (286), Expect = 3e-33 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 12/112 (10%) Query: 66 YFEYDSSDLKPEAMRALDVHA---KDLKSNGNRVVLEGNTDERGTREYNMALGERRAKAV 122 F ++ + LKPE ALD +L VV+ G TD G+ YN L ERRA++V Sbjct: 222 LFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSV 281 Query: 123 QRYLVLQGVSPAQLELVSYGEERPVATGNDEQS---------WAQNRRVELR 165 YL+ +G+ ++ GE PV + A +RRVE+ Sbjct: 282 VDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 64.7 bits (157), Expect = 2e-13 Identities = 36/231 (15%), Positives = 78/231 (33%), Gaps = 6/231 (2%) Query: 37 TPELPPSKPIVQATLYQLKSKSQATTQTNQKIAGEAKKTASRQTEVEQLEQKKVEQEAVK 96 T P+ ++ A + A T S TE K+ E + V+ Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVD-EAPVPPPAPATPSETTETVAENSKQ-ESKTVE 1052 Query: 97 AAEQKKADAAQKAEEAREAAEAK-KAEDAAKAAEAAKAAEAKKAAEAKKADEAKKAAEKQ 155 EQ + A+ A EAK + + E A++ K + + E +++ Sbjct: 1053 KNEQDATET--TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 156 QADIAKKKAEDEAKKKAEEEAKKEAAEEAKKQAAEDAKKKAAEEAKKKAAEDAKKKAAAE 215 +A + +K ++ K ++ K+E +E + QA + K+ ++ A E Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQT-NTTADTE 1169 Query: 216 DAKKKAAEEAKKKAAADAQKKKAQEAARKAAEDKKAQALAELLSDTTERQQ 266 K+ + ++ A + S+++ + + Sbjct: 1170 QPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Score = 59.7 bits (144), Expect = 8e-12 Identities = 35/201 (17%), Positives = 71/201 (35%), Gaps = 9/201 (4%) Query: 69 AGEAKKTASRQTEVEQLEQKKVEQEAVKAAEQKKADAAQKAEEAREAAEAKKAEDAAKAA 128 + Q +V + E V A A +E AE K E Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEK 1053 Query: 129 EAAKAAEAKK-AAEAKKADEAKKAAEKQQADIAKKKAEDEAKKKAEEEAKKEAAEEAKKQ 187 A E E K ++ A Q ++A+ +E K+ E K+ A E +++ Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE--TKETQTTETKETATVEKEEK 1111 Query: 188 AAEDAKKKAAEEAKKKAAEDAKKKAAAEDAKKKAAEEAKKKAAADAQKKKAQE----AAR 243 A + +K +E K ++ + K+ +E + +A + + ++ ++Q Sbjct: 1112 AKVETEKT--QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169 Query: 244 KAAEDKKAQALAELLSDTTER 264 + A++ + + TT Sbjct: 1170 QPAKETSSNVEQPVTESTTVN 1190
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 0.003 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 16/96 (16%) Query: 383 SGSIVLLVGPPGVGKTSIGKSIAESLGR---PFYRFSVGGMRD---EAEIKGHRRT-YIG 435 + +++ G G GK + +++ + R PF ++ + E+E+ GH + + G Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTG 218 Query: 436 AQ---PGKLVQALKDVEVMNPVIMLDEIDKMGQSYQ 468 AQ G+ QA + LDEI M Q Sbjct: 219 AQTRSTGRFEQAEGG------TLFLDEIGDMPMDAQ 248
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 31.6 bits (71), Expect = 0.004 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Query: 168 LIPSDEEIDQIMGLITDPKFDANLFKAVAQKLASHADALEGARTFSDLGEARARLDKKIE 227 ++ D+ +I+G T FDAN + +A + S+ + ++ + A + + + Sbjct: 90 IVSGDKRSPEILGYSTSGSFDANGKENIASFMESYVEQIKENKKLDTTYAGTAEIKQPVV 149 Query: 228 EALGDQRQVQ----RPLQTARDELEAVK 251 ++L D + + P +E VK Sbjct: 150 KSLLDSKGIHYNQGNPYNLLTPVIEKVK 177
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.9 bits (210), Expect = 2e-21 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 1/144 (0%) Query: 2 RLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYELVILDVNLPELDGWT 61 +L+ +D+ L Q L GY V +LV+ DV +P+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLQRLRAESA-TRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQ 120 +L R++ +++++A +K + GA DYL KPF+ EL+ I L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 QLQPSTLRVADLELDPGRHRAYRA 144 + D GR A + Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQE 148
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 148 bits (375), Expect = 5e-40 Identities = 91/448 (20%), Positives = 175/448 (39%), Gaps = 84/448 (18%) Query: 4 IRNFSIIAHIDHGKSTLADRFIQMCGG---LSAREMEAQVLDSMDLERERGITIKAHSVT 60 I N ++AH+D GK+TL + + G L + + D+ LER+RGITI+ + Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 61 LHYKAQDGKTYQLNFIDTPGHVDFTYEVSRSLAACEGALLVVDAGQGVEAQSVANCYTAI 120 ++ ++N IDTPGH+DF EV RSL+ +GA+L++ A GV+AQ+ + Sbjct: 63 FQWE-----NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 121 EQGLEVMPVLNKMDLPQADPDRVKDEIEK-----------------IIGIDATDAVACSA 163 + G+ + +NK+D D V +I++ + + T++ Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 164 KSGMGVDEVLERLVHTIPAPEGEIDAPLQALIID-------------------------S 198 G D++LE+ + E++ + + Sbjct: 178 VI-EGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITN 236 Query: 199 WF--------------------DNYLGVVSLVRVRHGRVKKGDKILVKSTGKVHLVDSVG 238 F ++ +R+ G + D + + K+ + + Sbjct: 237 KFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYT 296 Query: 239 VFTPKHTQTADLKAGEVGFIIASIKDIHGAPVGDTLTLSSTPEVEVLAGFKKIQPQVYAG 298 + + +GE+ + + + +GDT L +E P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKL-NSVLGDTKLLPQRERIEN------PLPLLQTT 349 Query: 299 LFPVSSDDFEDFRDALQKLTLNDSSLQY-MPESSDALGFGFRCGFLGMLHMEIIQERLER 357 + P E DAL +++ +D L+Y + ++ + FLG + ME+ L+ Sbjct: 350 VEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIIL----SFLGKVQMEVTCALLQE 405 Query: 358 EYDLDLITTAPSVIY-ELELKTGETIVV 384 +Y +++ P+VIY E LK E + Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIH 433 Score = 36.8 bits (85), Expect = 2e-04 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 1/83 (1%) Query: 397 TDFREPIVTATILVPQEHLGNVITLCIEKRGVQRDMQFLGSQVQVRYDMPMNEVVLDFFD 456 T+ EP ++ I PQE+L T + D Q ++V + ++P + ++ Sbjct: 533 TELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARC-IQEYRS 591 Query: 457 RLKSTSRGYASLDYHFDRYQSAN 479 L + G + Y Sbjct: 592 DLTFFTNGRSVCLTELKGYHVTT 614
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 79.3 bits (195), Expect = 2e-18 Identities = 41/191 (21%), Positives = 68/191 (35%), Gaps = 37/191 (19%) Query: 98 QSLGSGFIISSDGYVLTNNHVVADADEIIVRLSDRSELQ------------AKLVGTDPR 145 + SG ++ D +LTN HVV L ++ Sbjct: 101 TFIASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 159 Query: 146 TDVALLKVE--------GKNLPIVKLGDSEKLKVGEWVLAIGSPFGFDHSVTKGIVSAKG 197 D+A++K G+ + + ++ + +V + + G P T K Sbjct: 160 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK-PVATMWESKGKI 218 Query: 198 RTLPNDTYVPFIQTDVAINPGNSGGPLFNMKGEVVGINSQIFTRSGGFMGLSFAIPIDVA 257 L +Q D++ GNSG P+FN K EV+GI+ G+ V Sbjct: 219 TYLKG----EAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFNGAVF 265 Query: 258 I--DVSNQLKK 266 I +V N LK+ Sbjct: 266 INENVRNFLKQ 276
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 30.5 bits (69), Expect = 0.015 Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 11/90 (12%) Query: 155 GPVVVDIPKDMTNPAEKFEYVYPKKVKLRSYSPAVRGHSGQIRKAAEMLLAAKRPIVYS- 213 G V+ + K Y ++ L YSP H E+ AA I S Sbjct: 74 GAVLARVDAGDEQLERKIHY---RQQDLVDYSPVSEKHLADGMTVGELCAAA---ITMSD 127 Query: 214 --GGGVILG--GGSEALTEIAKSLNLPVTN 239 ++L GG LT + + VT Sbjct: 128 NSAANLLLATVGGPAGLTAFLRQIGDNVTR 157
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.016 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 7/91 (7%) Query: 11 QKRPTGRSRAWLGWALKLSLVGLVIVAGFAVYLDAVV----QEKFSGKRWTIPAKVYARP 66 + P R + + + LV I++ ++ V + SG+ I + Sbjct: 49 IETPVSRRPRLVAYFIMGFLVIAFILSVLG-QVEIVATANGKLTHSGRSKEIKPIENSIV 107 Query: 67 LELFT--GQKLSKNDFLTELDALGYRRESAA 95 E+ G+ + K D L +L ALG ++ Sbjct: 108 KEIIVKEGESVRKGDVLLKLTALGAEADTLK 138
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 51.1 bits (122), Expect = 1e-09 Identities = 67/280 (23%), Positives = 103/280 (36%), Gaps = 26/280 (9%) Query: 3 RRPAALLALCASLVLSTQALAAEL-PQRWVSAGGALSEWIAALG----GEARLVGVDTTS 57 RR +AL L A AA + P R V+ E + ALG G A + Sbjct: 10 RRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWV 69 Query: 58 QHPASLKSLPSVGYQRQLSAEGILSLRPDVLVGTEEMGPPP-VLAQIHKAGVRVELFSS- 115 P S+ VG + + + E + ++P +V + GP P +LA+I F+ Sbjct: 70 SEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARI----APGRGFNFS 125 Query: 116 --KAELAAVDENLKHLGQLLGAEQQAATLATDYRQQLDALHAKVKQAQAGQQAPGVVLLV 173 K LA ++L + LL + A T + Q + +K + A ++L Sbjct: 126 DGKQPLAMARKSLTEMADLLNLQSAAET----HLAQYEDFIRSMKPRFVKRGARPLLLTT 181 Query: 174 GHAGAKPLIAGQGTAGDWLLGQAGGRNLAEHQ----GYKNFSNEALAAL-DPDVIVFSDR 228 L+ G + +L + G N + + G S + LAA D DV+ F Sbjct: 182 LIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHD 241 Query: 229 ALADEQALQALLKENPALAASRAVREKRLVSLDPTLLVGG 268 D AL A P A VR R + G Sbjct: 242 NSKDMDALMA----TPLWQAMPFVRAGRFQRVPAVWFYGA 277
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 27.2 bits (60), Expect = 0.012 Identities = 13/38 (34%), Positives = 17/38 (44%) Query: 28 AAGGAASGAAGALSGAEAGAVLGVVGGPVGIAIGSIAG 65 AAG AG ++ +VL GG GI G + G Sbjct: 218 AAGSQRGTVAGGVNTDRLTSVLSSAGGSFGIFNGDVLG 255
>PF06917#Periplasmic pectate lyase Length = 555 Score = 26.8 bits (59), Expect = 0.042 Identities = 14/69 (20%), Positives = 28/69 (40%) Query: 43 HYPKAGGGRKPYPLETMLRVHLLQNWFSLSDPAMEEALYEITSMRQFARLGVLRGDALLH 102 +Y G P+PL+ + L++ W D + + + + Q A L + A L Sbjct: 379 YYGVKGTVISPFPLDVDYLLPLVRAWRLSEDEELLDLIGVLLLRWQLAELNKTQRRATLM 438 Query: 103 DREKKYSGP 111 ++ + P Sbjct: 439 AAQRPIASP 447
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.005 Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 20/134 (14%) Query: 17 KQAEDPSQPRDPQAQACIEQHLR-----QQPAAPYYMAQAILVQEAAIKRLDEQNKQLEA 71 K +D ++ + E Q ++ Q K K+ +A Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 72 ELQQARAQAQAAQAASSAPSNGGGGFLSSIFGSGGRNAAPAVQPQRPAAAPVASGGGWRE 131 +++ + Q + +P + + VQPQ A +E Sbjct: 1113 KVETEKTQEVPKVTSQVSPK---------------QEQSETVQPQAEPARENDPTVNIKE 1157 Query: 132 PSAPGFSQPPTQQP 145 P + + T+QP Sbjct: 1158 PQSQTNTTADTEQP 1171
>OMPTIN#Omptin serine protease signature. Length = 317 Score = 31.5 bits (71), Expect = 0.010 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 11/81 (13%) Query: 219 VDESIAYFTETSKSMERVLDIFVRANEGGTKLSKSDLLLSTITTMWGDLNAREEIYSFVD 278 ++ I+ T + K+ ERV A EGG K+S+ D + + G +N ++ + Sbjct: 32 INADISLGTLSGKTKERVYL----AEEGGRKVSQLDWKFNNAAIIKGAINW--DLMPQIS 85 Query: 279 -----YLNTGLARNNSFDKDW 294 + G N D+DW Sbjct: 86 IGAAGWTTLGSRGGNMVDQDW 106
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 26.6 bits (58), Expect = 0.024 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 11/80 (13%) Query: 36 KLVETTIESLGLKCRVKSDVKSAVLQGGVLGA---ALGVLSTPVTVATLSVGAVATVGHT 92 K + +E LG+ D K+A + G ++GA A+ +++ V VA + GA A +G+ Sbjct: 387 KAITKALEGLGV------DKKTAEMAGSIVGAIVAAIAMVAVIVVVAVVGKGAAAKLGNA 440 Query: 93 LATYNPDYEILKDYVNKSLK 112 L+ E +K V LK Sbjct: 441 LSKMMG--ETIKKLVPNVLK 458
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.001 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 3/84 (3%) Query: 66 LAVRDQKLPDMEIEQAHHELGELAALGALEIIKANLPDGALTKRARGTKADAERVSAVQA 125 +K + + E LP L R A+ E + A Sbjct: 388 PDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRV---LAEMEYPLILAA 444 Query: 126 LKQQGKTQAEAARELGLPTSTVHR 149 L Q +AA LGL +T+ + Sbjct: 445 LTATRGNQIKAADLLGLNRNTLRK 468
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 36.1 bits (83), Expect = 1e-04 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 2/106 (1%) Query: 18 PPWTPPLPPLPPLPPLPP--VPPQPPAPPEPLDPTDPECGPPDEGPPDPDQEAADDGKEG 75 PP PP P + P P P+PP + P P ++ D K Sbjct: 62 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPV 121 Query: 76 TDEPRQVPQAPQPIAPPGRFGGARRGLGDYASNGDRRSLRKSLRDY 121 P + P P A + R+L ++ Y Sbjct: 122 ESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQY 167 Score = 31.5 bits (71), Expect = 0.003 Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 2/88 (2%) Query: 14 TPYVPPWTPPLP-PLPPLPPLPPVP-PQPPAPPEPLDPTDPECGPPDEGPPDPDQEAADD 71 P V P P P P PP + P+P P+P E D P + + + Sbjct: 71 EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFE 130 Query: 72 GKEGTDEPRQVPQAPQPIAPPGRFGGAR 99 A G R Sbjct: 131 NTAPARPTSSTATAATSKPVTSVASGPR 158
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 171 bits (435), Expect = 5e-48 Identities = 97/448 (21%), Positives = 167/448 (37%), Gaps = 87/448 (19%) Query: 4 NLRNIAIIAHVDHGKTTLVDKLLRQSGTLERNELNDE--RVMDSNDQEKERGITILAKNT 61 + NI ++AHVD GKTTL + LL SG + D+ D+ E++RGITI T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 62 AINWNGYHINIVDTPGHADFGGEVERVMSMVDSVLLLVDAQDGPMPQTRFVTKKAFEAGL 121 + W +NI+DTPGH DF EV R +S++D +LL+ A+DG QTR + + G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 122 KPIVVINKVDRPGARPDWVLDQIFD-------------LFDNLGATDEQLD--------- 159 I INK+D+ G V I + L+ N+ T+ Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 160 --------------------------------FKVVYASALNGIAGLDHTEMGEDMTALY 187 F V + SA N I G+D+ L Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNI-GIDN---------LI 231 Query: 188 QSIIDNVPAPSVDRDGPFQMQISALDYNSFLGVIGVGRIARGRVKPNTPVVAIDTNGKKR 247 + I + + + ++ ++Y+ + R+ G + V I K + Sbjct: 232 EVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD-SVRISEKEKIK 290 Query: 248 NGRILKLMGHHGLHRIDVEEAQAGDIVCISGFDELF---ISDTLCAPDAVEAMKPLTVDE 304 + +G +++A +G+IV + + DT P + + Sbjct: 291 ITEMYTS--ING-ELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQR----ERIENPL 343 Query: 305 PTVSMTFQVNDSPFCGKEGKFVTSRNIKDRLDKELLYNVALRVQETDSPDKFKVSGRGEL 364 P + T + + + + D L LR + + +S G++ Sbjct: 344 PLLQTTVEPSKPQQREMLLDALLEISDSDPL---------LRYYVDSATHEIILSFLGKV 394 Query: 365 HLSVLIETMRRE-GFEMAVGRPEVIIRE 391 + V ++ + E+ + P VI E Sbjct: 395 QMEVTCALLQEKYHVEIEIKEPTVIYME 422 Score = 36.4 bits (84), Expect = 3e-04 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 398 EPFENVTIDIPEESQGKVMEEMGLRKGDLTNMVPDGKGRVRLEYNIPARGLIGFRNQFLT 457 EP+ + I P+E + + ++ + V L IPAR + +R+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKN-NEVILSGEIPARCIQEYRSDLTF 595 Query: 458 LTNGAGILTSIFDRY 472 TNG + + Y Sbjct: 596 FTNGRSVCLTELKGY 610
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 555 bits (1431), Expect = 0.0 Identities = 199/480 (41%), Positives = 299/480 (62%), Gaps = 16/480 (3%) Query: 1 MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMGRLARQQPDVIISDIRMPG 60 M+ + T+ + DDD +IR VL +AL + G + +A + +A D++++D+ MP Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 ASGLDLLAQIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRAN 120 + DLL +I++ P LPV++M+A + +A+ + + GA++YLPKPFD+ E + ++ RA Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 121 QHAQEQQGLDVPQNLARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAH 180 + + + + ++G + AMQE++R + RL +++T++I GESGTGKELVA Sbjct: 120 AEPKRRPS-KLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 181 ALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLD 240 ALH + R PF+A+NMAAIP+DL+ESELFGHEKGAFTGA GRFEQA+GGTLFLD Sbjct: 179 ALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLD 238 Query: 241 EIGDMPADTQTRLLRVLADGEFYRVGGHVPVKVDVRIIAATHQNLESLVQAGKFREDLFH 300 EIGDMP D QTRLLRVL GE+ VGG P++ DVRI+AAT+++L+ + G FREDL++ Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYY 298 Query: 301 RLNVIRIHIPRLADRREDIPALARHFLARAAQELAVEPKVLKPETEEFIRNLPWPGNVRQ 360 RLNV+ + +P L DR EDIP L RHF+ +A +E ++ K E E ++ PWPGNVR+ Sbjct: 299 RLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVRE 357 Query: 361 MENTCRWITVMASSREVLIGDLPP----ELLNLPQDAAPVTNWEQALRQWADQALAR--- 413 +EN R +T + + + E+ + P + A + ++ Q ++ + + Sbjct: 358 LENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFA 417 Query: 414 ------GQTNLLDSAVPSFERIMIETALKHTAGRRRDAALLLGWGRNTLTRKIKELGMNV 467 + L D + E +I AL T G + AA LLG RNTL +KI+ELG++V Sbjct: 418 SFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSV 477
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 210 bits (536), Expect = 7e-73 Identities = 79/160 (49%), Positives = 112/160 (70%), Gaps = 4/160 (2%) Query: 1 MTDQQTNGAAAEDNS--PQFSLQRIYVRDLSFEAPKSPQIFRQTWEPSVALDLNTKQKAL 58 M+++ AA + P +QRIYV+D+SFEAP P IF+Q WEP ++ DL+T+ K + Sbjct: 1 MSEENQVNAADTQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQV 60 Query: 59 EGDFHEVVLTLSV--TVKNGDEVAFIAEVQQAGIFLIANLDAPSMSHTLGAFCPNILFPY 116 D +EV L +SV T+++ +VAFI EV+QAG+F I+ L+ M+H L + CPN+LFPY Sbjct: 61 GDDLYEVCLNISVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPY 120 Query: 117 ARETLDSLVTRGSFPALMLSPVNFDALYAQEMQRMQEAGE 156 ARE + SLV RG+FPAL LSPVNFDAL+ +QR ++A + Sbjct: 121 ARELVSSLVNRGTFPALNLSPVNFDALFMDYLQRQEQAEQ 160
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.9 bits (67), Expect = 0.015 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 247 IVTQNMRLADFLAQVSRYRHGYLGCSNEIADLRLSGVFRLEDPEQLLRLLPQTL 300 V + L D L + S++I D ++SG F ++P+ L+ + Sbjct: 38 YVAKGESLRDLLTDFGANYDATVVVSDKIND-KVSGQFEHDNPQDFLQHIASLY 90
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 29.4 bits (66), Expect = 0.008 Identities = 10/38 (26%), Positives = 18/38 (47%) Query: 30 ADAADLAQDTFVRLLQRREQLQLNAPRAFLRTVARGLV 67 + D +L +++L L P+AF+ ARG + Sbjct: 136 VPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYI 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.6 bits (173), Expect = 2e-16 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Query: 2 PHILIVEDEAAIADTLLYALQADGHSTEWVTLGSAALDQQRQRPADLIILDIGLPDISGF 61 IL+ +D+AAI L AL G+ + + DL++ D+ +PD + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 ETCRQLR-RFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMA 120 + +++ ++PV+ +SA++ + + E GA DY+ KPF E+ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 121 PRAEPATVAA 130 R + Sbjct: 124 RRPSKLEDDS 133
>PF06580#Sensor histidine kinase Length = 349 Score = 36.0 bits (83), Expect = 3e-04 Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 31/185 (16%) Query: 298 IERESERLQQMIERLLNLARVEQMQALEDEQQVALAALVDEL-LLAHAARIE----GANL 352 I + + ++M+ L L R +L +L DEL ++ ++ L Sbjct: 186 ILEDPTKAREMLTSLSELMR----YSLRYSNA-RQVSLADELTVVDSYLQLASIQFEDRL 240 Query: 353 HVRQRVPAGLRLLCDPFLMRQALA-NLLDNALDFTPEGGALLFDLERDGERVALSLFNQG 411 ++ + + P ++ Q L N + + + P+GG +L +D V L + N G Sbjct: 241 QFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG 300 Query: 412 HAIPAYAIGRVSERFYSLPRPGSGRKSTGLGLNFVAEVMQLHGG---ALAVDNVDGGVRV 468 + ++STG GL V E +Q+ G + + G V Sbjct: 301 SLAL-----------------KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343 Query: 469 RLWLP 473 + +P Sbjct: 344 MVLIP 348
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.8 bits (69), Expect = 0.033 Identities = 14/55 (25%), Positives = 25/55 (45%) Query: 312 QSDEIAFAGELADQFAQVITNHNRRAATNALHLFQRAVEQSASAFLLVNRDGRVE 366 SD++ + + Q + N A+ L + SA+ F L N+DG+V+ Sbjct: 494 LSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQTPLGSAATFTLANKDGKVD 548
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.008 Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 43 SMEIPAPKAGVIKELKVKLGDRLKEGDELLVLEAEGAAAAAPEAPAAAAAPAAA 96 S EI + ++KE+ VK G+ +++GD LL L A GA A + ++ Sbjct: 96 SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 33.4 bits (76), Expect = 2e-04 Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 16/126 (12%) Query: 1 MRQRGVTLIQMLSALAVAVLLTQLGIPAYARMSDDLHRAAAARDLAQALRSARSHAVLQG 60 MRQRG TL++M+ L + + + + A+ DD AR LR + + G Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLAR-FEAQLRFVQQRGLQTG 59 Query: 61 QPVVVVALDGNWGNGWRAVLEHNQQVLREHRLSRPMYIAANTGGQVKFSAQGVPMQPNNA 120 Q V W Q L L + +P++ Sbjct: 60 QFFGVSVHPDRW------------QFL---VLEARDGADPAPADDGWSGYRWLPLRAGRV 104 Query: 121 QLSGRL 126 SG + Sbjct: 105 ATSGSI 110
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 28.0 bits (62), Expect = 0.018 Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 17/127 (13%) Query: 4 RQIGFGLLE-----VVMALAIGLLLLA-AASQLFTSAHQAWRLQSTAVRMQDEARQALLR 57 RQ GF LLE ++M ++ G++LLA AS+ ++A R ++ +Q Q Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQF 61 Query: 58 MAQDIRMTGM-FGCLQLGPGDFNAPGSQLAFAR---PLEVDSTTLS-------LVVAELP 106 + F L+ G AP PL S L +A Sbjct: 62 FGVSVHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAGRVATSGSIAGGKLNLAFAQ 121 Query: 107 GQAGKSD 113 G+A Sbjct: 122 GEAWTPG 128
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 27.5 bits (61), Expect = 0.012 Identities = 9/24 (37%), Positives = 17/24 (70%) Query: 1 MKRQRGVVLLLALVLSLLLGLLAA 24 +QRG LL +V+ +++G+LA+ Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLAS 27
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 43.0 bits (101), Expect = 3e-08 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 6/112 (5%) Query: 2 QQGLSLIELLIVLAVTGILAAIAYPSYSDQLRRAARSEVVGLLHDAALRLERHRVRTGEY 61 Q+G +L+E+++V+ + G+LA++ P+ +A + + V + L+ +++ Y Sbjct: 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHY 66 Query: 62 AEGDPALPDGTRYYSLQAQRGSDTFTLHARRLPNGLMAQDGCG-DFQLDQAG 112 + L +L + + +RLP D G D+ L G Sbjct: 67 PTTNQGLESLVEAPTLPPLAANYNKEGYIKRLP-----ADPWGNDYVLVNPG 113
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.5 bits (71), Expect = 8e-04 Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 64 DEAHLLNITVKPENQGCGMGLRLLEHLMARAYQLNGRECFLEVRASNQSAYRLYERYGF 122 A + +I V + + G+G LL + A + + LE + N SA Y ++ F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 31.4 bits (71), Expect = 0.004 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 243 ATDMPLGQVLERLAGYQGQRLWMMDEQVAHRRVSGDFNLDRPGESLQSLADAQHLQ 298 A L +L + + D + +VSG F D P + LQ +A +L Sbjct: 40 AKGESLRDLLTDFGANYDATVVVSD--KINDKVSGQFEHDNPQDFLQHIASLYNLV 93
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.1 bits (86), Expect = 1e-04 Identities = 54/270 (20%), Positives = 100/270 (37%), Gaps = 14/270 (5%) Query: 38 LIQSVLPAIYPMLKANYDLSFAQIGMITLTFQITASLLQPWVGFFTDRRPTPNLLPLGTL 97 LI VLP + L + D++ A G++ + + P +G +DR +L + Sbjct: 23 LIMPVLPGLLRDLVHSNDVT-AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLA 81 Query: 98 CTLVGIVMLAFVGSFPMILLASALVGIGSSTFHPETSRIARLASGGR----FGLAQSTFQ 153 V ++A ++ + + GI +T + IA + G FG + F Sbjct: 82 GAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFG 141 Query: 154 VGGNTGSALGPLLAAAIV-IPFGQTHVAWFGLAGLFFLGVTLMLRGWYKEHLNQAKARKA 212 G G LG L+ PF A L GL FL +L +K + R+A Sbjct: 142 FGMVAGPVLGGLMGGFSPHAPF----FAAAALNGLNFLTGCFLLPESHKGERRPLR-REA 196 Query: 213 VQATHGISRNRVIAALIVLGLLVFSKYFYMASFTSYFTFYLIEKFGVSVASSQLHLFLF- 271 + R + + L + F + + + ++F + + L F Sbjct: 197 LNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFG 256 Query: 272 -LGAVAAGTFFGGPIGDRIGRKAVIWFSIL 300 L ++A GP+ R+G + + ++ Sbjct: 257 ILHSLAQAMIT-GPVAARLGERRALMLGMI 285 Score = 31.3 bits (71), Expect = 0.007 Identities = 21/90 (23%), Positives = 35/90 (38%) Query: 281 FGGPIGDRIGRKAVIWFSILGVAPFTLALPYADLFWTTVLSVVIGFILASAFSAIVVYAQ 340 G + DR GR+ V+ S+ G A + A W + ++ I + + Y Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA 121 Query: 341 ELVPGSVGMIAGIFFGLMFGFGGIGAALLG 370 ++ G F FGFG + +LG Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLG 151
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 43.7 bits (103), Expect = 9e-07 Identities = 76/341 (22%), Positives = 131/341 (38%), Gaps = 21/341 (6%) Query: 24 LPLVSLRLHEAGASTLEIGIISAIPAAGMMLSAFLVDACCRHLTRRTIYLLCFSLCTVSI 83 LP + L + T GI+ A+ A A ++ A RR + L+ + V Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDY 87 Query: 84 ALLESAFGSLWLLALLRLGLGL-GMGIAIILGESWVNELCPEHNRGKIMALYATSFTGFQ 142 A++ +A LW+L + R+ G+ G A+ +++ ++ R + + F Sbjct: 88 AIMATA-PFLWVLYIGRIVAGITGATGAVAG--AYIADITDGDERARHFGFMSACFGFGM 144 Query: 143 VLGPAMLAVLGANSPWITGVV-TVCYGLALLCIVLTVPNDHVEHEEGEKSFG---LAGFF 198 V GP + ++G SP GL L +P H + LA F Sbjct: 145 VAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFR 204 Query: 199 RVAPALCMAVLFFSFFDAVVLSLLP----VYATSHGFA--VGVAALMVTVVFAGDMLFQL 252 +A L FF ++ +P V F + + L Q Sbjct: 205 WARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQA 264 Query: 253 PL-GWLADRV-ERTGLHLACGLVAMAIGIGLPWLLNLTWLLWPLLVVLGAVAGGIYTLAL 310 + G +A R+ ER L L G++A G L W+ +P++V+L +GGI AL Sbjct: 265 MITGPVAARLGERRALML--GMIADGTGYILLAFATRGWMAFPIMVLLA--SGGIGMPAL 320 Query: 311 -VLIGQRFKGQDLVTANASVGLLWGVGSLVGPLVSGAAMNV 350 ++ ++ + S+ L + S+VGPL+ A Sbjct: 321 QAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 30.2 bits (68), Expect = 0.031 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 8/123 (6%) Query: 29 SAPATPLSNLAAAEAPALDENASLEQLNDRLDQIRQGVTSEANDDLLSQLRLAAM----- 83 S ++++A E L L+ R Q S+ + + L Sbjct: 43 SGTLQSIADMAEEVTFVFSERKELS-LDKRKLSDSQARVSDVEEQVNQYLSKVPELEQKQ 101 Query: 84 QVQRQADALSAQRTADVGKLDDKLKVIG--PAQPDEALTLTQQRKALEAEKKALVAQQDQ 141 V LS + +L L+ P++ + L + E L +Q Sbjct: 102 NVSELLSLLSNSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGRPELAHLSHLVEQ 161 Query: 142 AIK 144 A+ Sbjct: 162 ALV 164
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.8 bits (132), Expect = 5e-10 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 7/138 (5%) Query: 10 LIVDDFTDFRTSTRSMLRELGVRDVDTADSGEQALRMCAQKRYDFILQDFHLGDGKKNGQ 69 L+ DD RT L G DV + R A D ++ D + D N Sbjct: 7 LVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWIAAGDGDLVVTDVVMPDE--NAF 63 Query: 70 QVLEDLIIDKHISHECVFIMVTAESSQAIVLSAIEHEPDAYLTKPFNRVGLAQRVEK-LF 128 +L + K + ++++A+++ + A E YL KPF+ L + + L Sbjct: 64 DLLPRI---KKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 129 QRKTLLKPILQALDRNRP 146 + K + P Sbjct: 121 EPKRRPSKLEDDSQDGMP 138
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.001 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 20/95 (21%) Query: 137 ATRFAGHALLITIEEADNQLAICVNDDGPGYPKHMLERQEEYIQGIDSTSGSTGLGLYFA 196 A G +L+ + + + + V + G + +T STG GL Sbjct: 273 AQLPQGGKILLKGTKDNGTVTLEVENTGSL--------------ALKNTKESTGTGLQNV 318 Query: 197 -ARIAALHESGGVRGRIEISNGGALGGGLFRLFLP 230 R+ L+ G +I++S G + +P Sbjct: 319 RERLQMLY---GTEAQIKLSE--KQGKVNAMVLIP 348
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 104 bits (260), Expect = 1e-28 Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 16/171 (9%) Query: 66 KGALIGAAAVGAAAAGYGY-YADKQEAELRAQMANTGVEVQRQGDQIKLIMPGNITFATD 124 + G + G Y + + A + A EVQ + + ++ F + Sbjct: 171 AHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTK----HFTLKSDVLFNFN 226 Query: 125 SANIAPSFYSPLNNLAGSFKQFN--QNTIEVVGFTDSTGSRQHNMDLSQRRAQAVSTYLT 182 A + P + L+ L + ++ V+G+TD GS +N LS+RRAQ+V YL Sbjct: 227 KATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLI 286 Query: 183 SQGVDASRISVRGMGPDQPIASNADANGR---------AQNRRVEVNLKPI 224 S+G+ A +IS RGMG P+ N N + A +RRVE+ +K I Sbjct: 287 SKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGI 337
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 27.6 bits (61), Expect = 0.023 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 4 AANKAVSIDYTLTNDAGETIDSS-AGGAPLVYLHGAGNIIPGLEKALEGKQAGDELNVTI 62 + V+++YT T G DS+ G P + +IPG +AL+ AG V + Sbjct: 142 GKSDTVTVEYTGTLIDGTVFDSTEKAGKPATF--QVSQVIPGWTEALQLMPAGSTWEVFV 199 Query: 63 EPEDAYG 69 + AYG Sbjct: 200 PADLAYG 206
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.4 bits (201), Expect = 4e-20 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 2/131 (1%) Query: 2 RVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGYG 61 +L+ +D+ L++ LS G+ V + + GD ++V DV++P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRALRAR-KQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARL-QALTRRSS 119 +L ++ PV++++A+ I +GA DYL KPF EL+ + +AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 120 SHEPLQVQVAD 130 L+ D Sbjct: 125 RPSKLEDDSQD 135
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 785 bits (2030), Expect = 0.0 Identities = 287/1033 (27%), Positives = 503/1033 (48%), Gaps = 34/1033 (3%) Query: 12 IDHPIATLLLTFALVLLGAIAFPRLPVAPLPEADFPTIQVTAQLPGASPETMASSVATPL 71 I PI +L L++ GA+A +LPVA P P + V+A PGA +T+ +V + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVI 65 Query: 72 EVQFSAIPGMTQMTSSSA-LGSTTLILQFTLDKNIDTAAQEVQAAINTATARLPQDLPNP 130 E + I + M+S+S GS T+ L F + D A +VQ + AT LPQ++ Sbjct: 66 EQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQ 125 Query: 131 PTWRKVNPADSPVLVMTVSSD--QMPGNDLSDYAETLLARQLSQIEGVGLINITGQLRPA 188 + S ++V SD +D+SDY + + LS++ GVG + + G A Sbjct: 126 GI-SVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY-A 183 Query: 189 IRVQAQPEKLAAIGLTLADLRQAIQQTSLNLAKGALYGEHSVS------TIAANDQLFHP 242 +R+ + L LT D+ ++ + +A G L G ++ +I A + +P Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNP 243 Query: 243 EDYAQLIV-SYRDGAPVHLKDVAKVINGAENAYVKAWSGDQPGLNLVIFRQPGANIVDTV 301 E++ ++ + DG+ V LKDVA+V G EN V A +P L I GAN +DT Sbjct: 244 EEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTA 303 Query: 302 DRVLAALPKLQEMLPASVEVSVLQDRTQTIRASLHEVELTLMIAVALVIGVMALFLRQWS 361 + A L +LQ P ++V D T ++ S+HEV TL A+ LV VM LFL+ Sbjct: 304 KAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMR 363 Query: 362 ATMVVSSVLGVSLIASCALMYVLGFSLNNLTLVAIVISVGFVVDDAIVVVENIHRHL-EA 420 AT++ + + V L+ + A++ G+S+N LT+ +V+++G +VDDAIVVVEN+ R + E Sbjct: 364 ATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMED 423 Query: 421 GDDSRTAALKGAGEIGFTVVSISFSLIAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480 + A K +I +V I+ L A FIP+ F GG G ++++F++T + + +SV+ Sbjct: 424 KLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVL 483 Query: 481 VSLTLAPTLCALFMR---RPPGEHKGGFG-------ERLVKWYEKGLNRALAHQRLTLGV 530 V+L L P LCA ++ E+KGGF + V Y + + L L + Sbjct: 484 VALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLI 543 Query: 531 FGVTLALAVAGYVGIPKGFFPLQDTGFILGTSEAAADVSYPSMIEKHQALAKIIGADPA- 589 + + +A V ++ +P F P +D G L + A + + + + Sbjct: 544 YALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKA 603 Query: 590 -VRAFSHSVGVTGSNQTIANGRFWIALKPRGERDV---SASELIDRLRPKLAQVPGIVLY 645 V + G + S Q G +++LKP ER+ SA +I R + +L ++ + Sbjct: 604 NVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVI 663 Query: 646 MRAGQDINLSSGPSRTQYQYVLKSNDG-DALNLWTQRLTDRLRENPA-FRDLSNDLQLGA 703 I + ++ + ++ G DAL +L ++PA + + Sbjct: 664 PFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDT 723 Query: 704 SVTRIDIDRQAAARFGLTTTDVDQALYDAFGQRQISEFQTETNQYKVILELDARQRGKAE 763 + ++++D++ A G++ +D++Q + A G +++F K+ ++ DA+ R E Sbjct: 724 AQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPE 783 Query: 764 SLNYFYLRSPLTNQMVPLSAVAHVAPPSTGPLSISHDGLFPAANLSFNLAPGVALGDAVS 823 ++ Y+RS +MVP SA G + P+ + APG + GDA++ Sbjct: 784 DVDKLYVRSA-NGEMVPFSAFTTSHW-VYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 824 ILDRTQRELGMPDSISGNFQGAAQAFQSSLSSQPWLILAALVAVYIILGVLYESFVHPLT 883 +++ +L P I ++ G + + S + P L+ + V V++ L LYES+ P++ Sbjct: 842 LMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 884 IISTLPSAGLGALILLWAMGQDFSIMGLIGVVLLIGIVKKNGILLIDFALEAQRHHGLTP 943 ++ +P +G L+ Q + ++G++ IG+ KN IL+++FA + G Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 944 EQAIHQACLTRFRPIIMTTLAALLGAVPLMFGFGTGAELRQPLGIAVVGGLLVSQALTLF 1003 +A A R RPI+MT+LA +LG +PL G G+ + +GI V+GG++ + L +F Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1004 TTPVIYLALERLF 1016 PV ++ + R F Sbjct: 1020 FVPVFFVVIRRCF 1032 Score = 98.8 bits (246), Expect = 5e-23 Identities = 82/514 (15%), Positives = 169/514 (32%), Gaps = 39/514 (7%) Query: 9 AWCIDHPIATLLLTFALVLLGAIAFPRLPVAPLPEADFPTIQVTAQLP-GASPETMASSV 67 + LL+ +V + F RLP + LPE D QLP GA+ E + Sbjct: 531 GKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVL 590 Query: 68 ATPLEV----------QFSAIPGMTQMTSSSALGSTTLILQFTLDKNIDTAAQEVQAAIN 117 + + G + + G + L+ + A+ Sbjct: 591 DQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLK---PWEERNGDENSAEAV- 646 Query: 118 TATARLPQDLPNPPTWRKVNPADSPVLVMTVSS--------DQMPGND-LSDYAETLLAR 168 R +L + ++ + ++ G+D L+ LL Sbjct: 647 --IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGM 704 Query: 169 QLSQIEGVGLINITGQ-LRPAIRVQAQPEKLAAIGLTLADLRQAIQQTSLNLAKGALYGE 227 + + G +++ EK A+G++L+D+ Q I T+L + + Sbjct: 705 AAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTI-STALGGTYVNDFID 763 Query: 228 ----HSVSTIAANDQLFHPEDYAQLIVSYRDGAPVHLKDVAKVINGAENAYVKAWSGDQP 283 + A PED +L V +G V + ++ ++G P Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNG-LP 822 Query: 284 GLNLVIFRQPGANIVDTVDRVLAALPKLQEMLPASVEVSVLQDRTQTIRASLHEVELTLM 343 + + PG + D +A + L LPA + + R S ++ + Sbjct: 823 SMEIQGEAAPGTSSGD----AMALMENLASKLPAGIGYDW-TGMSYQERLSGNQAPALVA 877 Query: 344 IAVALVIGVMALFLRQWSATMVVSSVLGVSLIASCALMYVLGFSLNNLTLVAIVISVGFV 403 I+ +V +A WS + V V+ + ++ + + +V ++ ++G Sbjct: 878 ISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLS 937 Query: 404 VDDAIVVVENI-HRHLEAGDDSRTAALKGAGEIGFTVVSISFSLIAAFIPLLFMGGVVGR 462 +AI++VE + G A L ++ S + I +PL G Sbjct: 938 AKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSG 997 Query: 463 LFKEFALTATATILISVVVSLTLAPTLCALFMRR 496 + ++ + ++++ P + R Sbjct: 998 AQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 58.3 bits (141), Expect = 2e-11 Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 50/208 (24%) Query: 1 MRRPSRSVILAALA-LLVLVVAGIWFGQRQPEPAARAQTAIPVRVVSVAQQDVPRYASAI 59 SR L A + LV+A I V +V+ A + Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSV------------LGQVEIVATANGKL------- 90 Query: 60 GSVLSLHSVEVRPQVEGILTQVLVKEGQWVKEGDLLATLDDRSIRASLDQARAQLGQSQA 119 S S E++P I+ +++VKEG+ V++GD+L L A + ++ L Q++ Sbjct: 91 --THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARL 148 Query: 120 Q---------------------------IQVAGVDLKRYR-LLSSDDGVSKQTLDQQQAL 151 + V+ ++ R L+ + Q++ Sbjct: 149 EQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELN 208 Query: 152 VNQLQATVKGNQAAIANAEVQLSYTQIR 179 +++ +A A I E + R Sbjct: 209 LDKKRAERLTVLARINRYENLSRVEKSR 236 Score = 33.3 bits (76), Expect = 0.002 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 10/100 (10%) Query: 104 RASLDQARAQLGQSQAQIQVAGVDLKRYRLLSSDDGVSKQTLDQQQALVNQLQATVKGNQ 163 L ++QL Q +++I A + + LD+ + Q + Sbjct: 265 VNELRVYKSQLEQIESEILSA-----KEEYQLVTQLFKNEILDK----LRQTTDNIGLLT 315 Query: 164 AAIANAEVQLSYTQIRSPVTGRVGIRNV-DPGNLVRTSDT 202 +A E + + IR+PV+ +V V G +V T++T Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.6 bits (178), Expect = 2e-15 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 643 RKRILVVDDSLTVRELQRKLLGNRGYDVAVAVDGMDGWNALRGEDFDLLITDIDMPRMDG 702 ILV DD +R + + L GYDV + + W + D DL++TD+ MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 703 IELVTLVRRDQRLQSLPVMVVSYKDREEDRRRGLDAGADYYLAKASFHDDALLDAV 758 +L+ +++ LPV+V+S ++ + + GA YL K F L+ + Sbjct: 63 FDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK-PFDLTELIGII 115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.5 bits (113), Expect = 3e-08 Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 22/183 (12%) Query: 2 KIAIVNDMPMAVEALRRAVAFEPAHQVVWVASNGAEAVQRCCEQLPDLILMDLIMPVMDG 61 I + +D L +A++ + V + SN A + DL++ D++MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRA-GYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 VEATRRIMAETPCAIVIVTVDRKQNVHRVFEAMGHGALDVVDTPALGAGDAREAAAPLLR 121 + RI P V+V + +A GA D + P ++ Sbjct: 63 FDLLPRIKKARPDLPVLVMSA-QNTFMTAIKASEKGAYDYLPKPF-----DLTELIGIIG 116 Query: 122 KILNIGWLVGQQRAPAARPVAAPLREASQRRGLVAIGSSAGGPAALEVLLKSLPAAFPAA 181 + L +R P+ + + G+ +G SA VL + Sbjct: 117 RALAE-----PKRRPSKLEDDS-------QDGMPLVGRSAAMQEIYRVLARL--MQTDLT 162 Query: 182 VVL 184 +++ Sbjct: 163 LMI 165
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.6 bits (147), Expect = 2e-12 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 15/162 (9%) Query: 19 VLLVDDQAMIGEAVRRGLANEDNIDFHFCADPHQAVLQAMRIKPTVILQDLIMPGLDGLT 78 +L+ DD A I + + L+ D ++ +++ D++MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAG-YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 79 LVREYRNNPATQDIPIIVLSTKEDPLVKSAAFAAGANDYLVKLPDTIELVARIRYHSRSY 138 L+ + A D+P++V+S + + A GA DYL K D EL+ I Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA---- 118 Query: 139 LTLLQRDEAYRALRVSQQQLL--DSNLMLQ------RLMNSD 172 L +R + L S M + RLM +D Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD 160
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.8 bits (121), Expect = 5e-10 Identities = 22/90 (24%), Positives = 39/90 (43%) Query: 23 KTARQGSEQRRQLILDAAMRIVVRDGVRGVRHRAVAAEAGVPLSATTYYFKDIEDLLTDT 82 + +Q +++ RQ ILD A+R+ + GV +A AGV A ++FKD DL ++ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 83 FAQYVERSAAYMAKLWANTEVVLRQLLAQG 112 + + A +L + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREI 92
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.1 bits (166), Expect = 2e-16 Identities = 48/210 (22%), Positives = 78/210 (37%), Gaps = 16/210 (7%) Query: 12 GPGRPKDLAKREAILEAAKTLFLSLGYANTSMDAVAAAAGVSKLTVYSHFTDKQTLFCSA 71 + + R+ IL+ A LF G ++TS+ +A AAGV++ +Y HF DK LF S Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF-SE 61 Query: 72 VMATCQIQLPDLLFEYPEGAPVD--EVLLTIARGFQALISSDEAVKLSRLIMAQGSLDPS 129 + + + +L EY P D VL I ++E +L I+ Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFH--KCEF 119 Query: 130 FGEYFYEAG-----PKRVLAGMEALLRGAHERGLLRVD-NPLRAAEHFFCLVKGAPDYRL 183 GE +E L+ E +L D RAA + G L Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISG-----L 174 Query: 184 LLGCAAPLEGDEAEAHVREVVGVFLRAFKP 213 + + + + R+ V + L + Sbjct: 175 MENWLFAPQSFDLKKEARDYVAILLEMYLL 204
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.4 bits (131), Expect = 3e-10 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 14/165 (8%) Query: 93 DVRLQLEANRAQMAAAEANLSLVRAERDRYQKLLERQMVSHSQYDNAENLYRAGLARLKQ 152 + +L ++Q+ E+ + + E +L + +++ + GL L+ Sbjct: 263 EAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILD----KLRQTTDNIGLLTLEL 318 Query: 153 AKAEFDVAGNQAEYAVLRAPQAGVIAKRQV-EVGQVVAAGQTVFTLAADGER-EVAIGLP 210 AK E +V+RAP + + + +V G VV +T+ + + + EV + Sbjct: 319 AKNEERQQ-----ASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQ 373 Query: 211 EQQFARFAVGQPVSVELWSHPQERF---QGRIRELSPAADPRSRT 252 + VGQ +++ + P R+ G+++ ++ A R Sbjct: 374 NKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRL 418 Score = 47.5 bits (113), Expect = 5e-08 Identities = 15/126 (11%), Positives = 38/126 (30%), Gaps = 11/126 (8%) Query: 66 GGKVSKRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQMAAAEANLSLVRAERDRYQK- 124 V + +V+EG+ V+ L +L ++ + A + + + Sbjct: 104 NSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELN 163 Query: 125 ---------LLERQMVSHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAG 175 Q VS + +L + + + K + ++ ++ A A Sbjct: 164 KLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKR-AERLTVLAR 222 Query: 176 VIAKRQ 181 + Sbjct: 223 INRYEN 228
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 482 bits (1242), Expect = e-156 Identities = 242/1050 (23%), Positives = 447/1050 (42%), Gaps = 49/1050 (4%) Query: 5 LSAWALRNRQIVLFLMILLAAIGAMSYTKLGQSEDPPFTFKAMVIRTLWPGATAEEVSRQ 64 ++ + +R L I+L GA++ +L ++ P A+ + +PGA A+ V Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTERIEKKLMETGEYEKIVSFS-RPGESQVTFMARDSLHSKDIPELWYQIRKKVADIRHT 123 VT+ IE+ + + S S G +T + D Q++ K+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSG---TDPDIAQVQVQNKLQLATPL 117 Query: 124 LPPEIQGP-FFNDEFGTTFGNIYALTGEGFDY--AVLKDYADR-IQIQLQRVKDVGKVEL 179 LP E+Q ++ +++ + + + DY ++ L R+ VG V+L Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 180 IGLQDEKVWIELSNLKLATLGVPLEAVQKALQEQNAVSTAGFFE----TPSERLQ--LRV 233 G + I L L + V L+ QN AG P ++L + Sbjct: 178 FG-AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 234 SGRFDSVEQIRQFPIRVGD--RTFRIGDVAEVHRGFNDPPAPRMRFMGEDAIGLAVSMKD 291 RF + E+ + +RV R+ DVA V G + R G+ A GL + + Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNV-IARINGKPAAGLGIKLAT 295 Query: 292 GGDILVLGKALEGEFERLAHNLPAGMELRKVSDQPAAVKAGVGEFVQVLAEALVIVLLVS 351 G + L KA++ + L P GM++ D V+ + E V+ L EA+++V LV Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 352 FFSLG-LRTGLVVALAIPLVLAMTFAAMHYFGIGLHKISLGALVLALGLLVDDAIIAVEM 410 + L +R L+ +A+P+VL TFA + FG ++ +++ +VLA+GLLVDDAI+ VE Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 411 MA-IKMEQGYDRLKAASYAWTSTAFPMLTGTLITAAGFLPIATAASSTGEYTRSIFQVVT 469 + + ME +A + + ++ ++ +A F+P+A STG R + Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 470 IALLASWVAAVVFVPYLGERLLPDLAKLHAARHGKDGHAPDPYATPFYQRVRRVVEWCVR 529 A+ S + A++ P L LL ++ H G + V + Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILG 535 Query: 530 RRKTVILLTVAAFVGSIVLFRFVPQQFFPASGRPELMVDLKLAEGASLANTAERVKQLEA 589 +L+ G +VLF +P F P + + ++L GA+ T + + Q+ Sbjct: 536 STGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTD 595 Query: 590 LLKQQDGIDNYVAYVGTGSPRFYLPLDQQLPAASFAQFVVLAKSMEDR---ERLRSWLID 646 + + + + G Q A A FV L K E+R E +I Sbjct: 596 YYLKNEKANVESVFTVNG-----FSFSGQAQNAGMA-FVSL-KPWEERNGDENSAEAVIH 648 Query: 647 TVDQQFPDLRARVTRLENGPPV-------GYPVQ-FRVTGEHIEKARALAREVADKVREN 698 + +R N P + G+ + G + ++ ++ Sbjct: 649 RAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQH 708 Query: 699 P-HVVNVHLDWEEPSKAVFLEIDQDRARALGVSTAHLASFLQSSLIGSTVSQYREDNELI 757 P +V+V + E + LE+DQ++A+ALGVS + + + ++L G+ V+ + + + Sbjct: 709 PASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVK 768 Query: 758 EILLRGTLQERSELGNLGSLALPTDNGQSVALSQVATLQYGFEEGIIWHRNRLPTVTVRA 817 ++ ++ + R ++ L + + NG+ V S T + + + N LP++ ++ Sbjct: 769 KLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQG 828 Query: 818 DIYDKEQPATLVKQILPTLQDIRAKLPDGYLLEVGGTVEDAERGQKSVNAGMPLFVVVVL 877 + P T + ++++ +KLP G + G A + + VVV Sbjct: 829 EA----APGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVF 884 Query: 878 SLLMIQLRSFSRTVMVFLTAPLGLIGVTLFLLVFRQPFGFVAMLGTIALAGMIMRNSVIL 937 L S+S V V L PLG++GV L +F Q M+G + G+ +N++++ Sbjct: 885 LCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILI 944 Query: 938 VDQIEQDIAA-GMERWQAIIEATVRRFRPIVLTALAAVLAMIPLSRSVFYG-----PMAV 991 V+ + + G +A + A R RPI++T+LA +L ++PL+ S G + + Sbjct: 945 VEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGI 1004 Query: 992 AIMGGLIVATVLTLLFLPALYAAWFRVKKG 1021 +MGG++ AT+L + F+P + R KG Sbjct: 1005 GVMGGMVSATLLAIFFVPVFFVVIRRCFKG 1034
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 28.5 bits (63), Expect = 0.008 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 12/56 (21%) Query: 1 MKKLFMLCCASLLAACSSQTPSNQASLDGEVFYLQRIALPPAATLSVELQDVSLMD 56 +K L ML A+LLAACS++ S S+D T S++LQ VS D Sbjct: 12 VKLLLMLGTAALLAACSNEADSLTTSID------------APVTASIDLQSVSYTD 55
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.3 bits (180), Expect = 2e-15 Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 9/145 (6%) Query: 668 PKILCVDDNAANLLLVQTLLEDLGAEVLAVDNGYAAVQAVQDEPFDLVLMDVQMPGMDGR 727 IL DD+AA ++ L G +V N + + DLV+ DV MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 728 ACTEQIRLWENTQSGNPLPIVALTAHAMANEKRALLHGGMDDYLTKPISERQLAQVVMKW 787 +I+ LP++ ++A G DYL KP +L ++ + Sbjct: 64 DLLPRIKKARPD-----LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR- 117 Query: 788 TGLSLGAPHQAQAELPANGDELKVL 812 +L P + ++L + + L Sbjct: 118 ---ALAEPKRRPSKLEDDSQDGMPL 139
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 2e-22 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 4/131 (3%) Query: 25 ILAIEDDPVLGAYLHEELQRGGFQVTWCRNGLEGLETAGRQIFDVVLMDILLPGLNGLDA 84 IL +DD + L++ L R G+ V N D+V+ D+++P N D Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 85 LAQLRKRSA-TPVILMSALGAEADRISGFQRGADDYLPKPFSMAELQVRIEAILRRVALE 143 L +++K PV++MSA I ++GA DYLPKPF + EL I L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE---P 122 Query: 144 RRYQAPLEQAG 154 +R + LE Sbjct: 123 KRRPSKLEDDS 133
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.013 Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 347 ENMLRNAIRHSPAEGVVRLGGQREGSYWWLWLEDEGGGVAEEDLE 391 EN +++ I P G + L G ++ L +E+ G + E Sbjct: 265 ENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE 309
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.006 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 17 QKQVSQTNKAEKKQKRMEHKGQVEVDDSQQRIAKEAMAEKVKRDQELNRQQQEKAEQKAR 76 + V++ +K E K + E + +AKEA K + + N Q E A+ + Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREVAKEA-----KSNVKANTQTNEVAQSGSE 1091 Query: 77 AAQVK 81 + + Sbjct: 1092 TKETQ 1096
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.0 bits (96), Expect = 9e-06 Identities = 20/150 (13%), Positives = 52/150 (34%), Gaps = 8/150 (5%) Query: 25 QVQRRQGARQGEQALLEERLNAAQLAQAGLQAQLDASRDEVSDLSEANTVKQTQLAAQGR 84 +V R + + + + + +L +A+ ++ + V++++L Sbjct: 183 EVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD--- 239 Query: 85 ELELLQIDRDNARDAAHAWHLERANREAELRRLEAQTARLEAELREQQESHQQRLEDLQE 144 L + A+ A + ELR ++Q ++E+E+ +E +Q + + Sbjct: 240 -FSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 145 ARDTLRAQFADMATKIFDEREQRFAQTSQQ 174 Q T A+ ++ Sbjct: 299 EILDKLRQ----TTDNIGLLTLELAKNEER 324
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.1 bits (143), Expect = 6e-11 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 4/121 (3%) Query: 1040 VLCVDNEDSILIGMNSLLSRWGCQVWTARNQAECEALLAKGMRPHLALVDYHLDDGETGT 1099 +L D++ +I +N LSR G V N A +A G L + D + D Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDE-NAF 63 Query: 1100 GLMGWLRARLGEPVPGVVISADGSKET-IALVHASGLDYLAKPVKPAALRAMLNRHLSLV 1158 L+ ++ + +P +V+SA + T I DYL KP L ++ R L+ Sbjct: 64 DLLPRIKKARPD-LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 1159 Q 1159 + Sbjct: 123 K 123
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 57.1 bits (138), Expect = 4e-11 Identities = 81/396 (20%), Positives = 139/396 (35%), Gaps = 17/396 (4%) Query: 11 TVRLLLLTTFSLTVARALTLPYLVVYLAD--NFQLPISQIGLLIGGALIIASLLSLYGGH 68 + ++L T V L +P L L D + + G+L+ ++ + G Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 69 LVDTLRNHTLVSASTLLFALAFIGAVASRSALLFFLCLVLINLALAVVDIAAKAGFCALL 128 L D ++ S A+ + + + ++ ++ + A +A A + Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIADIT 124 Query: 129 PVEERAEVFAIKYTLSNVGYAAGPLLGVAMLELNDHMPFIASAVL-GLVMCVAYWRLGDR 187 +ERA F G AGP+LG M + H PF A+A L GL + L + Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 188 SLQASAPEKPAAGFGQVALGLARDRRLVCFTLGGVLSAVVFGQFTAYLSQYLVVTSSPAE 247 P + A + AR +V + + GQ A L + Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHW 243 Query: 248 AARLVGYLVTTNAVTVIALQ-YLIGRRISRQRLMPWLLAGMGLFIAGLLGFALAGSVLAW 306 A +G + + Q + G +R L+ GM G + A A Sbjct: 244 DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMA 303 Query: 307 CLAMLVFTLGEIIVIPAEYMFIDLIAPEHLRGVYYGA-QNLSNLGAALGPVMVGFALVHL 365 M++ G I +PA + E +G G+ L++L + +GP++ Sbjct: 304 FPIMVLLASGGIG-MPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362 Query: 366 WP---------GAIFYLLVLSVILAGVFYGMGTRKD 392 GA YLL L + G++ G G R D Sbjct: 363 ITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRAD 398
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 49.5 bits (118), Expect = 1e-08 Identities = 74/410 (18%), Positives = 145/410 (35%), Gaps = 54/410 (13%) Query: 1 MFSWYRQITSRERKT-FWACFGGWSLDALEVQMFGLAIPALIAAFSLSKGDAGLISGLTL 59 M + Y Q R + W C + L + +++P + F+ ++ + Sbjct: 1 MNTSYSQSNLRHNQILIWLCILSF-FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFM 59 Query: 60 VTSAIGGWLGGTLSDRYGRVRTLQWMILWFSFFTFLSAFVTGFYPLL-FVKAMQGFGIGG 118 +T +IG + G LSD+ G R L + I+ F + + F+ LL + +QG G Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAA 119 Query: 119 EWAAGAVLMAETINPKYRGKVMGTVQSAWAVGWGLAVALFTLIYSLVPQEFAWRVMFFVG 178 A V++A I + RGK G + S A+G G+ I ++ W + + Sbjct: 120 FPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVG----PAIGGMIAHYIHWSYLLLIP 175 Query: 179 LLPSLLIIWVRRNVPEPDS-------------------FQRLQKENAIPTRFLQSMA-GI 218 ++ + + ++ + + + F +I + ++ I Sbjct: 176 MITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLI 235 Query: 219 FRPELLRVT--------------LLGGLLGLGAHGGYHAVMTWLPTFLKTERNLSVLNSG 264 F + +VT ++G L G G ++ +P +K LS G Sbjct: 236 FVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIG 295 Query: 265 ------GYLAVIILAFWCGCVVSGLLIDRIGRRKNILLFALCCVLTVQAYVFFPLTNTQM 318 G ++VII + + G+L+DR G + + ++ F T + Sbjct: 296 SVIIFPGTMSVIIFGY-----IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWF 350 Query: 319 LFLGFPLGF-FAAGIPASLGAFFNELYPADVRGAGVGFCYNFGRVLSAVF 367 + + + + + GAG+ NF LS Sbjct: 351 MTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSL-LNFTSFLSEGT 399
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 34.2 bits (78), Expect = 3e-04 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 96 IEDIAAAIAIDLPVLPPSGARERPLEPEPEVVKKPEPAPTPPPAPEPEV 144 + A I++ + V P + ++P PE V +PEP P P P P E Sbjct: 38 LPAPAQPISVTM-VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEA 85 Score = 30.3 bits (68), Expect = 0.005 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%) Query: 108 PVLPPSGARERPLEPEPEVVK-KPEPAPTPPPAPEPEVRP 146 PV+ P E EP E +P P P P P+P + Sbjct: 67 PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 106 Score = 28.8 bits (64), Expect = 0.017 Identities = 8/48 (16%), Positives = 13/48 (27%) Query: 106 DLPVLPPSGARERPLEPEPEVVKKPEPAPTPPPAPEPEVRPTRIITAP 153 + P P K P P P+P+ +P + Sbjct: 60 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQ 107 Score = 28.0 bits (62), Expect = 0.033 Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%) Query: 120 LEPEPEVVKKPEPAPTPP-PAPEPEVRPTRIITAPVRG 156 P+ V+ P P P PEP P + + Sbjct: 54 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK 91 Score = 28.0 bits (62), Expect = 0.034 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 2/44 (4%) Query: 104 AIDLPVLPPSGARERP-LEPEPEVVKKPEPAPTPPPAPEPEVRP 146 DL P +EPEPE PEP P P + +P Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEP-PKEAPVVIEKPKP 94
>PF07520#Virulence protein SrfB Length = 1041 Score = 32.2 bits (73), Expect = 0.003 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 5/73 (6%) Query: 240 TQKRLEDGSGYRLVIHPP----LADFPGESEEADCLRINQWVEGVLRECPEQYLWAHRRF 295 + E +RLV P E+ + + + WV L+E + A R Sbjct: 169 ERADSEKPREFRLVSDPGAMSWFLQRLEADEDGNAVDLQLWVSDWLKEMFLDFKRAERPG 228 Query: 296 KS-RPEGAPRLYE 307 +S E P ++E Sbjct: 229 RSISEENLPHMFE 241
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 186 bits (474), Expect = 1e-60 Identities = 65/206 (31%), Positives = 91/206 (44%), Gaps = 10/206 (4%) Query: 72 ALNVYDPLESINRRVYHFNYR-LDQWVLLPLVSGYQYVTPRFVRTGVSNFFNNLGDVPNL 130 DPLE NR +Y+FN+ LD +++ P+ ++ P+ R G+SNF NL + + Sbjct: 25 QQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVM 84 Query: 131 FNSVLQLKVKRSAEITARLMFNTIIGVGGLWDPATSMGLPRQ---SEDFGQTLGFYGVPD 187 N LQ + R NTI+G+GG D A Q FG TLG YGV Sbjct: 85 VNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGY 144 Query: 188 GPYLMLPVLGPSNLRDTTGLVVDYAGEQAINYLNVPETSTDHPEIFALQVVDKRYTTKFR 247 GPY+ LP G LRD G + D A +++L P + + L+ ++ R Sbjct: 145 GPYVQLPFYGSFTLRDDGGDMAD-ALYPVLSWLTWPMSVG----KWTLEGIETRAQLLDS 199 Query: 248 YGQL-NSPFEYEKVRYVYTQARKLQI 272 G L S Y VR Y Q Sbjct: 200 DGLLRQSSDPYIMVREAYFQRHDFIA 225
>INTIMIN#Intimin signature. Length = 939 Score = 28.5 bits (63), Expect = 0.040 Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 26/198 (13%) Query: 13 VGTALVMAMSAAQAMAKEVSIGYVDGWADSVATTNVAAEVIKQKLGYDVKLQAVA----- 67 +G+A ++A +++ D ++ +Q +LQ+ + Sbjct: 127 LGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYAAQQAASLGSQLQSRSLNGDY 186 Query: 68 TGIMWQGVATGKLDAMLSAWLPVTHGEYWTKNKDNVVDYGPNFKDAKIGLIVPEYVKAVS 127 G+A + + L AWL Y T + + G NF + + ++P Y Sbjct: 187 AKDTALGIAGNQASSQLQAWL----QHYGTAEVN--LQSGNNFDGSSLDFLLPFYDSEKM 240 Query: 128 IADLKTDSSFKQKIVGIDAGSGV-------MLKTDQAIKDYDLTGYKLQASSGAAMTAEL 180 +A + + + + G+G ML + I D D +G + G E Sbjct: 241 LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFI-DQDFSGDNTRLGIG----GEY 295 Query: 181 GRAYAKQQS---IAVTGW 195 R Y K ++GW Sbjct: 296 WRDYFKSSVNGYFRMSGW 313
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.035 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 6/60 (10%) Query: 612 AKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRD---EISQLRERL 668 +A E Y+++L +I I +E+ + + E +LR I L L Sbjct: 262 VEAVNELRVYKSQL---EQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLEL 318
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 104 bits (260), Expect = 4e-26 Identities = 83/413 (20%), Positives = 168/413 (40%), Gaps = 26/413 (6%) Query: 18 WIAVMSVMLGAFMAVLDIQITNSSLKDIQGALSATLEEGSWISTSYLVAEIIMIPLTAWL 77 W+ ++S F +VL+ + N SL DI + +W++T++++ I + L Sbjct: 18 WLCILS-----FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKL 72 Query: 78 VQLLSARRLAVWVSGGFLLSSLLCSMAWNLESMILF-RALQGFTGGALIPLAFTLTLIKL 136 L +RL ++ S++ + + S+++ R +QG A L + + Sbjct: 73 SDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYI 132 Query: 137 PEHHRAKGMAMFAMTATFAPSIGPTLGGWLTENWGWEYIFYINIPPGLVMIAGLMYGLEK 196 P+ +R K + +GP +GG + W Y+ I + ++ + LM L+K Sbjct: 133 PKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMIT-IITVPFLMKLLKK 191 Query: 197 KEAHWELLKSTDYAGIVTLGLGLGCLQVFLEEGHRKDWLESNLIVGLGSVALVSLITFVI 256 + D GI+ + +G+ +F ++ + V+++S + FV Sbjct: 192 EVRIKGHF---DIKGIILMSVGIVFFMLFT----------TSYSISFLIVSVLSFLIFVK 238 Query: 257 LQFSKPHPLINLRILGNRNFGLSSIASLGMGVGLYGSIYLLPLYLAQVQGYNALQIGEVI 316 P ++ + N F + + + + G + ++P + V + +IG VI Sbjct: 239 HIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVI 298 Query: 317 MWMGIPQLFLIPLVPQLMKVVSPK--VLCALGFCLFGAASFGSGVLNPDFAGPQFNHIQI 374 ++ G + +I +V + + F + SF + + F I I Sbjct: 299 IFPG--TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETT-SWFMTIII 355 Query: 375 IRALG-QPMIMVTISLIATAYIQPQDAGSASSLFNILRNLGGAIGIALLATLL 426 + LG IS I ++ ++ Q+AG+ SL N L GIA++ LL Sbjct: 356 VFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 149 bits (379), Expect = 2e-43 Identities = 68/411 (16%), Positives = 134/411 (32%), Gaps = 94/411 (22%) Query: 7 RRLAIFFTLVAIIALAFLAHWYFKGRFYESTDNAYVQGEIT------RISSQLGARIDTV 60 R +A F +IA + A G++T I + + + Sbjct: 58 RLVAYFIMGFLVIAFILSV-------LGQVEIVATANGKLTHSGRSKEIKPIENSIVKEI 110 Query: 61 PVEDNQHVNKGDLLV--------------------------RLEA--------------- 79 V++ + V KGD+L+ R + Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL 170 Query: 80 ---ADFELAVER--------AHAALATREAEYAQAQSRLTQQGSLIAAGQAQVAANQATF 128 F+ E +T + + Q + L ++ + A++ + Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Query: 129 DRSRLDLSRAEKLRKPGYVS-------EERVTTLSADSHVAGSQVDKARADLQSQRQQVN 181 + L L ++ E + + V SQ+++ +++ S +++ Sbjct: 231 RVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ 290 Query: 182 ALNADLKRL--------DAQIANARADLAQAELNLTRCEIRAPISGTIGQRNAR-NGQVV 232 + K I +LA+ E IRAP+S + Q G VV Sbjct: 291 LVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVV 350 Query: 233 QAGAYLLSIVPDED-IWVQANFKETQIGHMQPGQRAELLFDSYPDT---PIEGRVDSLFA 288 L+ IVP++D + V A + IG + GQ A + +++P T + G+V ++ Sbjct: 351 TTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL 410 Query: 289 ASGAQFSLLPPDNATGNFTKVVQRIPVKLTFSADNPLHGRIRPGMSVTATV 339 + D G V+ I + + + + GM+VTA + Sbjct: 411 DA-------IEDQRLGLVFNVIISIEENCLSTGNKNI--PLSSGMAVTAEI 452
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 49.6 bits (118), Expect = 6e-10 Identities = 23/85 (27%), Positives = 34/85 (40%) Query: 1 MSDKKSRTRERILEAARSALIQQGPAEPSVSQVMGAAGLTVGGFYAHFDSKDELMLEAFR 60 + TR+ IL+ A QQG + S+ ++ AAG+T G Y HF K +L E + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 QLLGERRALLAQIDPNLDGVGRRAL 85 L + G L Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVL 89
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 133 bits (336), Expect = 2e-38 Identities = 80/368 (21%), Positives = 130/368 (35%), Gaps = 80/368 (21%) Query: 15 VAATSIGAMAQGQGAVETEVFY------KKEFFDSQRDFKNDGN-------LFGGSIGYF 61 +A G Q A + +Y ++ D+ F N+ G GY Sbjct: 8 IAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTG--FINNNGPTHENQLGAGAFGGYQ 65 Query: 62 LTDDVELRLGYDEVHNARGEDGKN-----IKGSNTALDAVYHFNNPYDAIRPYVSAGFSH 116 + V +GYD + + +G Y + D Y G Sbjct: 66 VNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDI---YTRLGGMV 122 Query: 117 -QSLGQTGRGGRDHSTFAN--VGAGAKWYITDMFYARAGVEAQYNIDQG---------DT 164 ++ ++ G++H T + G ++ IT R E Q+ + G D Sbjct: 123 WRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRL--EYQWTNNIGDAHTIGTRPDN 180 Query: 165 EWAPSVGVGLNFGGSPKQAEAAPAPVAEVCSDSDNDGVCDNVDKCPDTPANVTVDADGCP 224 S+GV FG APAP Sbjct: 181 GML-SLGVSYRFGQGEAAPVVAPAPAPAP------------------------------E 209 Query: 225 AVAEVVRVELDVKFDFDKSVVKPNSYGDIKNLADFMKQY--PQTTTVVEGHTDSVGPDAY 282 + ++ DV F+F+K+ +KP + L + + VV G+TD +G DAY Sbjct: 210 VQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAY 269 Query: 283 NQKLSERRANAVKQVLTQQYGVESSRVDSVGYGETRPVADNATEEGR---------AINR 333 NQ LSERRA +V L + G+ + ++ + G GE+ PV N + + A +R Sbjct: 270 NQGLSERRAQSVVDYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDR 328 Query: 334 RVEAQVEA 341 RVE +V+ Sbjct: 329 RVEIEVKG 336
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 41.3 bits (96), Expect = 1e-05 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 362 VARQLLQAVGVLHRRNLLHRDIKPDNLHLGR-DGQLRLLDFGLAYCPGLSEDPRHELPGT 420 +A +LL L + ++H DIKP N+ R G+ ++D GL G E P+ T Sbjct: 250 IAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSG--EQPKG---FT 304 Query: 421 PSYIAPEAFDG-LPPSPRQDLYAVGVTLYHLLTGHYPYGEIEAFQRPRF 468 S+ APE G L S + D++ V TL H + G EI+ Q RF Sbjct: 305 ESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRF 353
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.7 bits (90), Expect = 3e-05 Identities = 80/415 (19%), Positives = 143/415 (34%), Gaps = 81/415 (19%) Query: 38 IAADLQLSAQQRGLMVAMPILAGAILRFAMGVLVDRLSPKTAGLIGQVVVIVALAAAWHL 97 IA D + +L +I G L D+L K L G ++I + Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFG--IIINCFGSVIGF 97 Query: 98 GVHSYEQALLLGVFL-GFAGASF-AVSLPLASQWYPPQHQGKAMG-IAGAGNSGTVFAAL 154 HS+ L++ F+ G A+F A+ + + +++ P +++GKA G I G Sbjct: 98 VGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPA 157 Query: 155 LAPALAAGFGWNNVFGFALIPLTLALAVFALLARNAPQRPKPKAMADYLKAL-------- 206 + +A W+ + LIP+ + V L + + + K D + Sbjct: 158 IGGMIAHYIHWSYLL---LIPMITIITVP-FLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 207 ----GDRDSWWFMFFYSVTFGGFI------------------------------------ 226 S F+ ++F F+ Sbjct: 214 FMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVA 273 Query: 227 GLASALPGYFSDQYGLSPITAGYYTAACVFAGSL----MRPLGGALADRFGGIRTLLGMY 282 G S +P D + LS G + +F G++ +GG L DR G + L Sbjct: 274 GFVSMVPYMMKDVHQLSTAEIG---SVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGV 330 Query: 283 SVAAICIAAVGFNLPSAAAALALFVSAMLG-LGAGNGAVFQLVPQRFR-QEIGVMTGLI- 339 + ++ F L + + + + + +LG L + +V + QE G L+ Sbjct: 331 TFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLN 390 Query: 340 -----GMAGGIG--GFLLAAGL-------GTIKQHTGDYQLGLWLFASLGLLAWF 380 GI G LL+ L + Q T Y L LF+ + +++W Sbjct: 391 FTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSNLLLLFSGIIVISWL 445
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.8 bits (119), Expect = 1e-09 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 2/124 (1%) Query: 3 RILLIDDTQNKLGRLKAALSEAGFEVIEAPDLTIDLPACVETVRPDVVLIDTDSPDRDVM 62 IL+ DD L ALS AG++V + L + D+V+ D PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAA-TLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EQVVLVSRDQPR-PIVLFTDEHDPGVMRQAIQAGVSAYIVEGIHAARLQPILDVAMARFE 121 + + + + +P P+++ + ++ +A + G Y+ + L I+ A+A + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 SDQA 125 + Sbjct: 124 RRPS 127
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.6 bits (69), Expect = 0.001 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 30 LIAVPLFILGALLVLSGLFGLDLGQIALGIIALIAGL 66 IAVP+ +LG +L+ FG + + + + L GL Sbjct: 369 TIAVPVVLLGTFAILA-AFGYSINTLTMFGMVLAIGL 404 Score = 28.3 bits (63), Expect = 0.009 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Query: 30 LIAVPLFILGALLVLSGLFGLDLGQIAL-GIIALI 63 ++ VPL I+G LL + LF + G++ I Sbjct: 901 MLVVPLGIVGVLLAAT-LFNQKNDVYFMVGLLTTI 934
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 28.1 bits (62), Expect = 0.040 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 6/51 (11%) Query: 14 GWTWEVGSRATDYPSDWFIEPH-----HHAKHQLIYAIKGLMIVESGNECW 59 G + E G R T + WF+EP A A GL + + G Sbjct: 765 GASLEAGRRFT-HADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSV 814
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.7 bits (90), Expect = 4e-05 Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 17/273 (6%) Query: 58 AQIGWIALIYQVTASLLQPWVGMFTDKHPQPYLLPAGMLVTLVGIALLAFAGSYEMLLVA 117 A G + +Y + P +G +D+ + +L + V A++A A +L + Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 118 AAVVGVGSATFHPEASRVARMASGGR----FGTAQSAFQVGGNTGSALGPLLTAAVVIPH 173 V G+ AT + +A + G FG + F G G LG L+ PH Sbjct: 103 RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM--GGFSPH 160 Query: 174 GQPAIAWFMLAAALAVMVLLRVTGWSVRHGQARLKTFASQQAPGLSRNAMWRAVVVIAVL 233 A F AAAL + L + + ++A + W + + Sbjct: 161 -----APFFAAAALNGLNFLTGCFL-LPESHKGERRPLRREALNPLASFRWARGMTVVAA 214 Query: 234 MFAKFVYIASFTNF----FTFYLIEHFGLSVQHSQLYLFVFLAAVALG-TFAGGPVGDRI 288 + A F + + + + F + L F +L GPV R+ Sbjct: 215 LMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARL 274 Query: 289 GRKAVIWVSFLGVAPFALALPHANLAWTAVLAV 321 G + + + + + L A W A + Sbjct: 275 GERRALMLGMIADGTGYILLAFATRGWMAFPIM 307
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 185 bits (470), Expect = 3e-60 Identities = 75/236 (31%), Positives = 108/236 (45%), Gaps = 15/236 (6%) Query: 12 RSAALALSLLMAAGCSQRAPASMACGPVAYQVSDPAEPANRVVFAFN-RTVDDYLLTPVA 70 R +ALAL + GC+ + G SDP E NR ++ FN +D Y++ PVA Sbjct: 4 RLSALALGTTLLVGCA-------SSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVA 56 Query: 71 RGYTAL-PDFAQQGVHNFASNFGEPKVFANDLLQGNGERAMTSLTRFIFNTTLGVAGLVD 129 + P A+ G+ NF N EP V N LQG+ + M TRF NT LG+ G +D Sbjct: 57 VAWRDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFID 116 Query: 130 VSGKMGLSQHRSD---FGQTFGVWGIGNGPIVELPLLGSHNLRDATGTVLSMAVDPFGDH 186 V+G R++ FG T G +G+G GP V+LP GS LRD G + Sbjct: 117 VAGMANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADALYPVL--- 173 Query: 187 SDTVDTLTTVATAGHVVDGRAAALPVTDLLHTWPDYYLAMRDYTAQQRSNLVAQGK 242 S ++ ++ RA L LL D Y+ +R+ Q+ + G+ Sbjct: 174 SWLTWPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGE 229
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.3 bits (211), Expect = 3e-21 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 2 LIVDDDVEVLDLLQKFLRQHGYEVDVACDGNALWQALERRVPDLVILDVMLPGDSGLVLC 61 L+ DDD + +L + L + GY+V + + LW+ + DLV+ DV++P ++ L Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLL 66 Query: 62 QRLLADYK-VAVIMLTAMGELSDRVVGLELGADDYLTKPFAARELLARVRAVLRR 115 R+ + V++++A + E GA DYL KPF EL+ + L Sbjct: 67 PRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 32.9 bits (75), Expect = 0.002 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 29/104 (27%) Query: 334 LVDNALKFA-------GAAELEVCREGGMTVIRVLDNGPGIPSGELDEVLKPFYRVEGSR 386 LV+N +K G L+ ++ G + V + G Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306 Query: 387 NRSTGGTGLGLAIAHQLIQAMGG---RLTLSNRESGGLCARIEL 427 + TG GL + +Q + G ++ LS ++ G + A + + Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQ-GKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.9 bits (223), Expect = 7e-23 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 1/126 (0%) Query: 6 HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65 IL+ DDD IR ++ L + G I ++ + ++ A DL+V D++MP ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 LCRELRAGKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRTR 125 L ++ + PVL+++A+N I E GA DYL KPF EL+ I L + Sbjct: 65 LLPRIKKARPD-LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 126 MLPPNL 131 P L Sbjct: 124 RRPSKL 129
>BICOMPNTOXIN#Staphylococcal bi-component toxin signature. Length = 315 Score = 31.4 bits (71), Expect = 0.006 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%) Query: 25 IYQTTSFAF-DDTQHGADLFDLKVAGNIYSRIMNPT 59 + Q F F D ++ D LK+ G I SR Sbjct: 58 VTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYN 93
>cloacin#Cloacin signature. Length = 551 Score = 30.8 bits (69), Expect = 1e-04 Identities = 12/25 (48%), Positives = 12/25 (48%) Query: 28 PGGGGGHGGGGHGGGGGFGGHQGGG 52 GGG G G GG G GG G G Sbjct: 54 IHWGGGSGHGNGGGNGNSGGGSGTG 78 Score = 30.5 bits (68), Expect = 2e-04 Identities = 13/24 (54%), Positives = 13/24 (54%) Query: 29 GGGGGHGGGGHGGGGGFGGHQGGG 52 GGG GHG GG G G G GG Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGN 80 Score = 25.8 bits (56), Expect = 0.007 Identities = 10/17 (58%), Positives = 11/17 (64%) Query: 28 PGGGGGHGGGGHGGGGG 44 GGG G+ GGG G GG Sbjct: 64 NGGGNGNSGGGSGTGGN 80 Score = 25.4 bits (55), Expect = 0.010 Identities = 12/22 (54%), Positives = 13/22 (59%) Query: 31 GGGHGGGGHGGGGGFGGHQGGG 52 GGG G G H GGG G+ GG Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGN 68 Score = 25.4 bits (55), Expect = 0.010 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 3/29 (10%) Query: 27 PPGGGGGHG---GGGHGGGGGFGGHQGGG 52 P GGG G G GGG G G G G GG Sbjct: 45 PWGGGSGSGIHWGGGSGHGNGGGNGNSGG 73 Score = 24.3 bits (52), Expect = 0.025 Identities = 10/23 (43%), Positives = 11/23 (47%) Query: 29 GGGGGHGGGGHGGGGGFGGHQGG 51 G G G+GGG GGG G Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNL 81 Score = 23.9 bits (51), Expect = 0.038 Identities = 13/28 (46%), Positives = 13/28 (46%) Query: 20 SGCWMFMPPGGGGGHGGGGHGGGGGFGG 47 SG G G G G G GGG G GG Sbjct: 52 SGIHWGGGSGHGNGGGNGNSGGGSGTGG 79
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.4 bits (97), Expect = 5e-06 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 13/136 (9%) Query: 140 ASQQISDLRSEQQAAQRRLELARLTFQREQQLWQERISAEQDYLQARQALQEAEIALANA 199 A ++ +S+ + + + A+ +Q QL++ I + L E+A Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE 323 Query: 200 RQKVAAVGPAGAGNRYELRAPFDAVVVE-KHLTAGEVVDETSNAFTLS-DLSRVWATFAV 257 RQ +RAP V + K T G VV + + + T V Sbjct: 324 RQ-----------QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALV 372 Query: 258 APRDLGKVVTGRDVTV 273 +D+G + G++ + Sbjct: 373 QNKDIGFINVGQNAII 388 Score = 37.5 bits (87), Expect = 7e-05 Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 13/120 (10%) Query: 90 ELGIAISFPGEIRFDEDRTAHVVPRVPGVVEAVHAELGQAVKRGQVLAVIASQQISDLRS 149 ++ I + G++ + P +V+ + + G++V++G VL + + + Sbjct: 79 QVEIVATANGKLTHSGRSKE-IKPIENSIVKEIIVKEGESVRKGDVLLKLTALG---AEA 134 Query: 150 EQQAAQRRLELARLTFQREQ---------QLWQERISAEQDYLQARQALQEAEIALANAR 200 + Q L ARL R Q +L + ++ E + + +L + Sbjct: 135 DTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQ 194
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 779 bits (2014), Expect = 0.0 Identities = 230/1062 (21%), Positives = 426/1062 (40%), Gaps = 55/1062 (5%) Query: 5 LIQFAIEQRLVVMLAVVLMAAVGIHSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQR 64 + F I + + + +++ G + +LP+ P I V ++ PG + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 ITFAIETAMAGLPGLKQTRSLSRS-GLSQVTVIFDDGTDVFFARQLVNERLQVAREQLPE 123 +T IE M G+ L S S S G +T+ F GTD A+ V +LQ+A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GIEAGMGPISTGLGEIFLWTVEAEEGALKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAE 183 ++ + +L D T D+ +K L + GV + Sbjct: 121 EVQQQGISVEKSSS-SYLMVA-----GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGD 174 Query: 184 VNSIGGHAKQYLIAPEPKRLAAYKLTLNDLIAALERNNANVGAGYI------ERNGEQLL 237 V G I + L YKLT D+I L+ N + AG + Sbjct: 175 VQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNAS 233 Query: 238 IRAPGQVASAEDIANIVI-SSVDGTPIRVSHVAEVGLGEELRSGAATENGREVVLGTVFM 296 I A + + E+ + + + DG+ +R+ VA V LG E + A NG+ + + Sbjct: 234 IIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKL 293 Query: 297 LIGENSRTVSQAVAAKLVEINRNLPKGVVAVTVYDRTNLVEKAIATVKKNLIEGAILVIA 356 G N+ ++A+ AKL E+ P+G+ + YD T V+ +I V K L E +LV Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 357 VLFLFLGNIRAALITAMVIPLSMLFTFTGMFSNKVSANLMSLG--ALDFGIIVDGAVVIV 414 V++LFL N+RA LI + +P+ +L TF + + S N +++ L G++VD A+V+V Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 415 ENAIRRLAHAQQRHGRMLTRSERFHEVFAAAREARRPLIYGQLIIMVVYLPIFALTGVEG 474 EN R + + + + + L+ +++ V++P+ G G Sbjct: 414 ENVERVMMEDK---------LPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 475 KMFHPMAFTVVMALLGAMILSVTFVPAAIALFVTGKVKEEEGL----------VMRTARQ 524 ++ + T+V A+ ++++++ PA A + E + Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVN 524 Query: 525 RYAPVLAWVLGRRKVAFAAAAALVLLSGVMASRMGSEFIPSLSEGDFALQALRVPGTSLS 584 Y + +LG A +V V+ R+ S F+P +G F G + Sbjct: 525 HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQE 584 Query: 585 QSVD-MQQRLEQAIIAQVPEVERVFARTGTAEIASDPMPPNISDAYVMLRPREQWVDPGK 643 ++ + Q + + + VE VF G + N A+V L+P E+ Sbjct: 585 RTQKVLDQVTDYYLKNEKANVESVFTVNG---FSFSGQAQNAGMAFVSLKPWEERNGDEN 641 Query: 644 PRDELIAEVQRAAASVPGSNYELSQPIQLRFNELISGVRSDVA-VKLFGDDMDVLNRTAA 702 + +I + + EL + D + G D L + Sbjct: 642 SAEAVIHRAKMELGKIRDGFVIPFNM--PAIVELGTATGFDFELIDQAGLGHDALTQARN 699 Query: 703 QIASSL-QGVAGASEVKVEQTTGLPVLTIDIDRDKAARHGLNVGDVQDAIAIAVGGRTAG 761 Q+ Q A V+ +++D++KA G+++ D+ I+ A+GG Sbjct: 700 QLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVN 759 Query: 762 TLYEGDRRFDMVVRLPETLRTDVDGLSSLLIPVPASATAGAAQIGFIPLSQVATLNLQLG 821 + R + V+ R + + L + +A +P S T + G Sbjct: 760 DFIDRGRVKKLYVQADAKFRMLPEDVDKLYVR--------SANGEMVPFSAFTTSHWVYG 811 Query: 822 PNQVSREDGKRVVVVSANVRGRDLGSFVEDAEQTLIQQVQIPPGYWTRWGGQFEQLQSAT 881 ++ R +G + + + L ++P G W G Q + + Sbjct: 812 SPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENL--ASKLPAGIGYDWTGMSYQERLSG 869 Query: 882 ERLQVVVPVALLLVMALLLMMFNNLRDGLLVFTGIPFALTGGVLALWLRDIPLSISAGVG 941 + +V ++ ++V L ++ + + V +P + G +LA L + + VG Sbjct: 870 NQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVG 929 Query: 942 FIALSGVAVLNGLVMIAFIRGLRE-EGRPLRVAVEEGALTRLRPVLMTALVASLGFIPMA 1000 + G++ N ++++ F + L E EG+ + A RLRP+LMT+L LG +P+A Sbjct: 930 LLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA 989 Query: 1001 LATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYQWAYRR 1042 ++ G G+ Q + V+GG++S+T L + +P + R Sbjct: 990 ISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.7 bits (85), Expect = 2e-04 Identities = 37/155 (23%), Positives = 57/155 (36%), Gaps = 24/155 (15%) Query: 52 VALLKTFAVFAVAFALRPLGGIVFGALGDRLGRKRILSLTILLMAGSTTLIGLLPTYASI 111 LL +A+ A A P+ G AL DR GR+ +L +++ A ++ P Sbjct: 46 GILLALYALMQFACA--PVLG----ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW-- 97 Query: 112 GLAAPVLLTLARCLQGFSAGGEYAGACAYLMEHAPNDRRAFYGSFVPVSTFSAFACAAVI 171 +L + R + G + G A A AY+ + D RA + F+ V+ Sbjct: 98 ------VLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 172 AYGLEASLSAEAMNAWGWRVPFLIAAPLGLVGLYL 206 GL S PF AA L + Sbjct: 151 G-GLMGGFSP--------HAPFFAAAALNGLNFLT 176
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 30.3 bits (68), Expect = 0.020 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 12/90 (13%) Query: 6 SLLLIMGTCSVAWADSAPVELGATTIDGERDAASGVQLDEPIRTGSRLGLTARETPASVS 65 S LL++ AW S P+ GAT+ A V P+ GS ++ ++ Sbjct: 12 SSLLVLSLTGCAWIPSTPLVQGATS-------AQPVPGPTPVANGSIF-----QSAQPIN 59 Query: 66 VSDRRLIEERGAKDSQDVINAMTGVNASAN 95 + L E+R ++ D + + N SA+ Sbjct: 60 YGYQPLFEDRRPRNIGDTLTIVLQENVSAS 89
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.9 bits (158), Expect = 1e-15 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 7/120 (5%) Query: 2 HLLVVEDDDIVRMLMVEVLDELGYNVIEAEDAAAALRVLEDPNQALALMMTDVGLPDMRG 61 +LV +DD +R ++ + L GY+V +AA R + L++TDV +PD Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPDENA 62 Query: 62 ELLAGKARELRPLLPVLFASGYADSFNVPEGMHL-----IGKPFSIDQLRDKVVAILGNP 116 L + ++ RP LPVL S + + KPF + +L + L P Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 8e-18 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 1026 KVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDGF 1085 +L+ DDD L AL G V I N + D DLV+ DV+MP+ + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDENAF 63 Query: 1086 EATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLPQ 1145 + I++ LP++ ++A+ + + GA DYL KP DL L +I L + Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 1146 LER 1148 +R Sbjct: 122 PKR 124 Score = 71.0 bits (174), Expect = 1e-14 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 5/127 (3%) Query: 759 ILVIEDEPNFARILFDLAHELGYSCLVAQGADEGFELAAQYIPDAILLDMRLPDHSGLTV 818 ILV +D+ +L GY + A + A D ++ D+ +PD + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 819 LQRLKEQAGTRHIPVHIISVEDRVE---AAMHMGAVGYAVKPTSREELKEVFARLEAKLT 875 L R+K+ +PV ++S ++ A GA Y KP EL + R A+ Sbjct: 66 LPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 876 QKLKHIL 882 ++ + Sbjct: 124 RRPSKLE 130 Score = 63.3 bits (154), Expect = 3e-12 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 880 HILLVEDDDLQRESIARLIGDDDVEITAVAFAQDALALLRENIYDCMIIDLKLPDMLGNE 939 IL+ +DD R + + + ++ + A + D ++ D+ +PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 940 LLKRMTAEDIRSFPPVIVYTG 960 LL R+ PV+V + Sbjct: 65 LLPRIKKARPD--LPVLVMSA 83
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.3 bits (180), Expect = 3e-16 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 19/169 (11%) Query: 7 AKLLIVDDLPENLLALAALIQGEDREVHQAQSAEAALSLLLEHEFALAILDVQMPGMNGF 66 A +L+ DD L + +V +A + + L + DV MP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 67 ELAELMRGTEKTRNIPIVFVTAAGREMNYAFKGYESGAVDFLYKPLDTLAVKSKVSVFVD 126 +L ++ + ++P++ ++A M A K E GA D+L KP D Sbjct: 64 DLLPRIK--KARPDLPVLVMSAQNTFMT-AIKASEKGAYDYLPKPFD------------- 107 Query: 127 LYRQRKVLDRQLQALERSRQEQELLLTQLQTARVELEHAVRMRDDFMSI 175 +++ +AL ++ L Q + + M++ + + Sbjct: 108 ---LTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL 153
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.9 bits (171), Expect = 3e-17 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 12/121 (9%) Query: 9 VLVVEDEPAIRMILRDYLAGEGYHVLVAEDGEQAFAILASKPHLDLMVTDFRLPGGISGV 68 +LV +D+ AIR +L L+ GY V + + + +A+ DL+VTD +P + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDE-NAF 63 Query: 69 EIAEPAVKLRPDLKVIFISGYP-----AEILESGSPITRKAPILAKPFDLDTLHEQIQAL 123 ++ K RPDL V+ +S + E G+ L KPFDL L I Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGA-----YDYLPKPFDLTELIGIIGRA 118 Query: 124 L 124 L Sbjct: 119 L 119
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.0 bits (109), Expect = 2e-07 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 8/125 (6%) Query: 84 ALGTVT-ATNTVNVRSRVAGELVKIHFKEGQQVKAGDLLAEIDPRSYRIALQQAEGTLAQ 142 A G +T + + ++ + +I KEG+ V+ GD+L ++ + + +L Q Sbjct: 86 ANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQ 145 Query: 143 NQAQLKNAQVDL--ARYKGLYAEDSIAKQTLDTA-EAQVAQFQGLVK----TNQAQVNDA 195 + + Q+ L + E +V + L+K T Q Q Sbjct: 146 ARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK 205 Query: 196 RLNLD 200 LNLD Sbjct: 206 ELNLD 210 Score = 36.7 bits (85), Expect = 1e-04 Identities = 17/118 (14%), Positives = 47/118 (39%), Gaps = 11/118 (9%) Query: 133 LQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQGLVKTNQAQV 192 L+ + L Q ++++ +A+ + L+ + + K L + ++ Sbjct: 268 LRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK--LRQTTDNIGLLT-------LEL 318 Query: 193 NDARLNLDFTQIRSPINGRV-GLRQLDLGNLVAANDATALVVITQTEPISVAFTLPET 249 + IR+P++ +V L+ G +V + T +V++ + + + V + Sbjct: 319 AKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALVQNK 375
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 833 bits (2153), Expect = 0.0 Identities = 285/1037 (27%), Positives = 512/1037 (49%), Gaps = 28/1037 (2%) Query: 3 LSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMTSA 62 ++ FI RP+ + + +++AG +A LPV+ P + P + V YPGA Q + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTAPLERQFGQMPGLEQMASTS-SGGASVLTLRFNLDMNMDVAEQQVQAAINAASNLLPS 121 VT +E+ + L M+STS S G+ +TL F + D+A+ QVQ + A+ LLP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 DLPAPPVYNKVNPADTPVLTLAISS--KTMPLPKLNDLVDTRVAQKLAQISGVGMVSIAG 179 ++ + + + ++ S ++D V + V L++++GVG V + G Sbjct: 121 EVQQQGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 GQRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVS------MLDAND 233 Q +RI ++ D L L DV + N G G + + A Sbjct: 180 AQYA-MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QLRSPEEYANLILAYN-NGAPLRLKDVAEIVDGAENERLAAWANENHAVLLNIQRQPGAN 292 + ++PEE+ + L N +G+ +RLKDVA + G EN + A N A L I+ GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 VIEVVDRIKDLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMVTFVF 352 ++ IK L + P G+ V D T ++ ++ +V L AI+LV +V ++F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LRRFSATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISR 412 L+ ATLIP+IAVP+ L+GTF ++ G+S+N LT+ + +A G +VDDAIV++EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-EEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAI 471 + E+ P +A K QI L+ + L AV IP+ F G ++R+F+IT+ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 LISLVVSLTLTPMMCARLLKREPKE--EEQSRFYRASGAWIDWLIKHYGSALQWVLKHQP 529 +S++V+L LTP +CA LLK E E + F+ D + HY +++ +L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 530 LTLLVAVASLALTVFLYMVVPKGFFPVQDTGVIQGISEAPQSTSFAAMSERQQALSKVIL 589 LL+ +A V L++ +P F P +D GV + + P + + ++ L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 590 QDPA--VQSLSSYIGVDGDNATLNSGRLLINLKPHGERDV---TASQVISRLQPQVDRLV 644 ++ V+S+ + G N+G ++LKP ER+ +A VI R + ++ ++ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 645 GIRLFMQPVQDLSIEDRVSRTQYQFSL---SSPDADLLAQWSGKLVQALQQRP-ELADVA 700 F+ P +I + + T + F L + D L Q +L+ Q P L V Sbjct: 659 D--GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 701 SDLQDKGLQVYLVIDRDMASRLGITVSQITNALYDAFGQRQISTIYTQASQYRVVLQSQD 760 + + Q L +D++ A LG+++S I + A G ++ + ++ +Q+ Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 761 AAVIGPQALESIHVKATDGGQVRLSALARIEQRQAQLAISHIGQFPAVILSFNLGHGASL 820 + P+ ++ ++V++ +G V SA + P++ + G S Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 821 GEAVQVIEQVQKDIGMPLGVQTRFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYESY 880 G+A+ ++E + +P G+ + G + + S + L+ + V +++ L LYES+ Sbjct: 837 GDAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESW 894 Query: 881 IHPVTILSTLPSAAVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALEAERH 940 PV+++ +P VG LLA + + ++G++ IG+ KNAI++++FA + Sbjct: 895 SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEK 954 Query: 941 QGMSPRDAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQ 1000 +G +A A +R RPILMT+LA + G +PL ++ G+G+ + +G+ ++GG++ + Sbjct: 955 EGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSAT 1014 Query: 1001 VLTLFTTPVIYLYFDRL 1017 +L +F PV ++ R Sbjct: 1015 LLAIFFVPVFFVVIRRC 1031 Score = 92.6 bits (230), Expect = 5e-21 Identities = 88/515 (17%), Positives = 172/515 (33%), Gaps = 49/515 (9%) Query: 2 NLSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMTS 61 N + L IV ++ + LP S LP+ D M P + Q T Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 62 AVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNM---------DVAEQQVQAAI 112 V + + + + + G S N M + E +A I Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 113 NAASNLLPSDLPAPPVYNKVNPADTPVLTLAISSKTMP------------LPKLNDLVDT 160 + A +L + ++ L ++ L + + + Sbjct: 648 HRAK----MELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLG 703 Query: 161 RVAQKLAQISGVGMVSIAGGQRQAVRIKVNVD--ALAANGLNLDDV----RTLIGASNVN 214 AQ A + V G + K+ VD A G++L D+ T +G + VN Sbjct: 704 MAAQHPASLVSV----RPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVN 759 Query: 215 QPKGNFDGPTRVSMLDANDQLR-SPEEYANLILAYNNGAPLRLKDVAEIVDGAENERLAA 273 G + + A+ + R PE+ L + NG + + RL Sbjct: 760 DF--IDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRL-- 815 Query: 274 WANENHAVLLNIQR--QPGANVIEVVDRIKDLLPSITDNLPAGLDVSVLTDRTQTIRAAV 331 N + IQ PG + + + +++L LPAG+ T + R + Sbjct: 816 -ERYNGLPSMEIQGEAAPGTSSGDAMALMENLA----SKLPAGIGYDW-TGMSYQERLSG 869 Query: 332 KDVQHELLIAIVLVVMVTFVFLRRFSATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMA 391 + I+ V+V + +S + + VPL ++G L + ++ Sbjct: 870 NQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVG 929 Query: 392 LTIATGFVVDDAIVMLENI-SRHIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLL 450 L G +AI+++E +EG+ ++A L R ++ + + I ++PL Sbjct: 930 LLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA 989 Query: 451 FMADVVGRLFREFAITLAVAILISLVVSLTLTPMM 485 I + ++ + ++++ P+ Sbjct: 990 ISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 811 bits (2096), Expect = 0.0 Identities = 298/1037 (28%), Positives = 522/1037 (50%), Gaps = 30/1037 (2%) Query: 3 LSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMAST 62 ++ FIRRP+ +L++ +M+ G ++ LPVA P + P + VSAN GA + + T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VATPLERKLGSIAGVTTLTSSS-NQGSTRVVIGFEMGRDIDGAAREVQAAINATRNLLPS 121 V +E+ + I + ++S+S + GS + + F+ G D D A +VQ + LLP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 GMRSMPTYKKINPSQAPIMVLSLTSD--VLQKGQLYDLADTILSQSLAQVSGVGEVQIGG 179 ++ + S + +MV SD + + D + + +L++++GVG+VQ+ G Sbjct: 121 EVQQQGISVE-KSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 SSLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFV------EDAERNWQVRAND 233 + A+RI ++ LLN+Y L+ +V + N + G + + N + A Sbjct: 180 AQY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QLESAKDYEPVVIR-QQNGTILRLSDVATITDGVENRYNSGFFNDQAAVLLVVNRQTGAN 292 + ++ +++ V +R +G+++RL DVA + G EN N + A L + TGAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 IIETVDQIKAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLF 352 ++T IKA+L LQ P +++ D +P ++ ++ E TL A++LV LV+YLF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LGSLRASLIPSLAVPVSLVGTFAVMYLCGFSLNNLSLMALILATGLVVDDAIVVLENISR 412 L ++RA+LIP++AVPV L+GTFA++ G+S+N L++ ++LA GL+VDDAIVV+EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-EDGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAI 471 + ED PP +A ++ L+ + + L AVF+ + F GG ++++FSIT+ +A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 IVSLVVSLTLTPMLCARWLKP----HQAEQTRLQRWSDKLHQRMVNAYDRSLGWAIRHKR 527 +S++V+L LTP LCA LKP H + W + VN Y S+G + Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 528 LTLLSLLATIGINIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFSVMQPKMEIYRRALL 587 LL + + L++ +P + +P++D G + I+ G + Q ++ L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 588 ADP-----AVQSVAGFIGGNSGTNNAMVLVRLKPISERKID---AQKVIERLRKEMPKVP 639 + +V +V GF N M V LKP ER D A+ VI R + E+ K+ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 640 GGRLFLMADQD-LQLGGGGRDQTSSQYLYTLQSGDLAALRQWFPKVVAALRALPELTAID 698 G + ++LG L L R + A L ++ Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQH--PASLVSVR 716 Query: 699 ARDGAGTQQVTLVVDRDQAKRLGIDMDMVTTVLNNAYSQRQISTIYDSLNQYQVVLEINP 758 T Q L VD+++A+ LG+ + + ++ A ++ D ++ ++ + Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 759 KYAWDPSTLEQVQVITADGARVPLSTIARYENSLANDRVSHEGQFASEDIAFDVAEGYSP 818 K+ P ++++ V +A+G VP S + R+ S +I + A G S Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 819 DQAMAALERAVAKLGLPEEVIAKLGGTADAFAKTQQGQPFMILGALLLVYLVLGILYESY 878 AMA +E +K LP + G + + P ++ + ++V+L L LYES+ Sbjct: 837 GDAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESW 894 Query: 879 IHPLTILSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERH 938 P++++ +P VG LLA + + + ++GL IG+ KNAIL+++ A L Sbjct: 895 SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEK 954 Query: 939 QGLSPEESIRRACLLRLRPILMTTLAAILGALPLLLSHAEGAEMRQPLGLTIIGGLVFSQ 998 +G E+ A +RLRPILMT+LA ILG LPL +S+ G+ + +G+ ++GG+V + Sbjct: 955 EGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSAT 1014 Query: 999 ILTLYTTPVVYLYLDRL 1015 +L ++ PV ++ + R Sbjct: 1015 LLAIFFVPVFFVVIRRC 1031 Score = 97.6 bits (243), Expect = 1e-22 Identities = 84/511 (16%), Positives = 178/511 (34%), Gaps = 41/511 (8%) Query: 2 NLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANL-SGASPEVMA 60 N G + +L+ I+ V F LP + LP+ D V + L +GA+ E Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 STVATPLERKL-------GSIAGVTTLTSSSN-QGSTRVVIGFEMGRDIDGAAREVQAAI 112 + + L S+ V + S Q + + + + +G +A I Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 113 NATRNLLPSGMRSMPTYKKINPSQAPIMVLSLTS-------DVLQKG--QLYDLADTILS 163 + + L + I + I+ L + D G L + +L Sbjct: 648 HRAKMELG----KIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLG 703 Query: 164 QSLAQVSGVGEVQIGGSS-LPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVED 222 + + + V+ G ++ V+ + +SL ++ +S A + D Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 223 AERNWQVRA---NDQLESAKDYEPVVIRQQNGTILRLSDVATITDG----VENRYNSGFF 275 R ++ +D + + +R NG ++ S T RYN Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYN---- 819 Query: 276 NDQAAVLLVVNRQTGANIIETVDQIKAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAE 335 L + Q A + A + L S LPA + + S + + +A Sbjct: 820 -----GLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGYDW-TGMSYQERLSGNQAP 873 Query: 336 HTLLIAVVLVILVVYLFLGSLRASLIPSLAVPVSLVGTFAVMYLCGFSLNNLSLMALILA 395 + I+ V+V L + S + L VP+ +VG L + ++ L+ Sbjct: 874 ALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTT 933 Query: 396 TGLVVDDAIVVLENI-SRHIEDGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGG 454 GL +AI+++E ++G+ ++A + + +L +++ + + + G Sbjct: 934 IGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG 993 Query: 455 IVRNLFQEFSITLAAAIIVSLVVSLTLTPML 485 I + ++ + ++++ P+ Sbjct: 994 AGSGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024 Score = 86.4 bits (214), Expect = 3e-19 Identities = 69/428 (16%), Positives = 155/428 (36%), Gaps = 24/428 (5%) Query: 607 NAMVLVRLKPISERKIDAQKVIERLRKEMPKVPGGRLFLMADQDLQLGGGGRDQTSSQYL 666 + + + + ++ I +V +L+ P +P Q++Q G +++SS YL Sbjct: 87 SVTITLTFQSGTDPDIAQVQVQNKLQLATPLLP---------QEVQQQGISVEKSSSSYL 137 Query: 667 -YTLQSGDLAALRQWFPKVVAALRALPELTAI----DARDGAGTQQVTLVVDRDQAKRLG 721 D Q A L+ + D + + + +D D + Sbjct: 138 MVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYK 197 Query: 722 IDMDMVTTVLNNAYSQ----RQISTIYDSLNQYQVVLEINPKYAWDPSTLEQVQV-ITAD 776 + V L Q + T Q + ++ +P +V + + +D Sbjct: 198 LTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK-NPEEFGKVTLRVNSD 256 Query: 777 GARVPLSTIARYENSLANDR--VSHEGQFASEDIAFDVAEGYSPDQAMAALER-AVAKLG 833 G+ V L +AR E N G+ A+ + D A A + A + Sbjct: 257 GSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPF 316 Query: 834 LPEEV-IAKLGGTADAFAKTQQGQPFMILGALLLVYLVLGILYESYIHPLTILSTLPSAG 892 P+ + + T + + A++LV+LV+ + ++ L +P Sbjct: 317 FPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVL 376 Query: 893 VGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGLSPEESIRRACL 952 +G L G + +++ G+ L IG++ +AI++++ ++ L P+E+ ++ Sbjct: 377 LGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMS 436 Query: 953 LRLRPILMTTLAAILGALPLLLSHAEGAEMRQPLGLTIIGGLVFSQILTLYTTPVVYLYL 1012 ++ + +P+ + + +TI+ + S ++ L TP + L Sbjct: 437 QIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL 496 Query: 1013 DRLRHRFN 1020 + + Sbjct: 497 LKPVSAEH 504
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 0.001 Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 33/214 (15%) Query: 92 RSNQTVAQSEAQYRQA-------QALVRSSRAALFPSLDLSASKNRSAQGTGSSSSSLSN 144 + ++++ QA Q L RS P L L S Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 145 NSSGIRNTYNAQLGVSWEIDLWGKLRETMNANEASAEASFA----DLASIR--------- 191 N + +D R T+ A E L Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 192 ----LSQQSELVQNYLQLRVIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQAR 247 L Q+++ V+ +LRV Q +E+ + + + ++ ++ + Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN---------EIL 301 Query: 248 TQLKSTQADLIDLIWQRAQFENAIAVLLGKAPAD 281 +L+ T ++ L + A+ E + +AP Sbjct: 302 DKLRQTTDNIGLLTLELAKNEERQQASVIRAPVS 335
>PF06580#Sensor histidine kinase Length = 349 Score = 34.5 bits (79), Expect = 7e-04 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 13/128 (10%) Query: 291 ISEQATHAAEVIRRLRAFLRKGPRRLQALDVAEVAGEAMRLC----AWEAAR--DQVQVE 344 I E T A E++ L +R R A V+ + + + + + D++Q E Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVS--LADELTVVDSYLQLASIQFEDRLQFE 243 Query: 345 LRISAQLPSVYADRVLLEQVLLNLLRNAIDANRELHGEKPSRILLGATRDGEGVLVEVAD 404 +I+ + V +L++ ++ N +++ I + +ILL T+D V +EV + Sbjct: 244 NQINPAIMDVQVPPMLVQTLVENGIKHGIA-----QLPQGGKILLKGTKDNGTVTLEVEN 298 Query: 405 QGPGVSPE 412 G Sbjct: 299 TGSLALKN 306
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 100 bits (251), Expect = 5e-27 Identities = 28/147 (19%), Positives = 57/147 (38%) Query: 3 AKVYVVDDDQGMRDSTVWLLQSVGLQALPFASGQAFLDACVNDAPACVLLDVRMPGLGGL 62 A + V DDD +R L G ++ V+ DV MP Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 AVQQAMRERGLMLPVIFVSGHADVPIVVRAFKAGACDFIEKPYNDQLLLDSVQAALEHAA 122 + +++ LPV+ +S ++A + GA D++ KP++ L+ + AL Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 123 RARQGDQALALVQVRIDGLTPRERDVF 149 R + + + + G + ++++ Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIY 150
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 86.8 bits (215), Expect = 1e-20 Identities = 56/413 (13%), Positives = 118/413 (28%), Gaps = 90/413 (21%) Query: 12 AEPSRKRKAWLLGLLLLLILGGIGTWAWYSLVGRWHESTDDAYVNGNVVEITPLVTGTVT 71 E R+ L+ ++ L + V + +G EI P+ V Sbjct: 49 IETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVK 108 Query: 72 SIGADDGDLVHAGQVLLQFDPADSEVALQSAEAKLARSVRQVRGLYSNVDSL-------- 123 I +G+ V G VLL+ +E ++ L ++ + S+ Sbjct: 109 EIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPEL 168 Query: 124 -----------------------KAQLETRQAELRKAQQDFNRR---------------- 144 K Q T Q + + + + +++ Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYEN 228 Query: 145 ------------KVLADSGAIAA-------EELSHARDDLSVAQAAVNSARQQLSTS--- 182 L AIA + A ++L V ++ + ++ ++ Sbjct: 229 LSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEE 288 Query: 183 ----SALVDDTVVSSHPEVMAAAADLRQ----AYLDHARTTLVAPVTGYVAKRTVQ-LGQ 233 + L + ++ + L + + APV+ V + V G Sbjct: 289 YQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGG 348 Query: 234 RLQPGTATMAVIPLDQV-WIDANFKETQLRDMRIGQPVEI--SADLYGSEVKYSGTVDSL 290 + M ++P D + A + + + +GQ I A Y G V ++ Sbjct: 349 VVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNI 408 Query: 291 GAGTGSAFALLPAQNATGNWIKIVQRVPVRIHLSPDQLKDHPLRIGLSTVVEV 343 G ++ + + K+ PL G++ E+ Sbjct: 409 NLDA-------IEDQRLGLVFNVIISIEE--NCLSTGNKNIPLSSGMAVTAEI 452
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 119 bits (301), Expect = 2e-31 Identities = 81/403 (20%), Positives = 162/403 (40%), Gaps = 28/403 (6%) Query: 19 IGLSLATFMQVLDTTIANVALPTISGNLGVSYEQGTWVITSFAVSNAIALPLTGWLSRRF 78 I L + +F VL+ + NV+LP I+ + WV T+F ++ +I + G LS + Sbjct: 17 IWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQL 76 Query: 79 GEVKLFIWATLLFVLASFLCGIAQSMPELVGF-RVLQGVVAGPLYPMTQTLLIAVY-PPA 136 G +L ++ ++ S + + S L+ R +QG +P +++A Y P Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQG-AGAAAFPALVMVVVARYIPKE 135 Query: 137 KRGMALALLAMVTVVAPIAGPILGGWITDSYSWPWIFF---INVPIGLFAAAVVRQQMRT 193 RG A L+ + + GP +GG I W ++ I + F ++++++R Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRI 195 Query: 194 RPVVTSRQPMDYIGLLTLIIGVGALQVVLDKGNDLDWFESSFIIVGSLISVVFLAVFVIW 253 + D G++ + +G+ + F +S+ I ++SV+ +FV Sbjct: 196 ------KGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKH 239 Query: 254 ELTDRHPVVNLRLFVHRNFRVGTIVLVGGYAGFFGINLILPQWLQTQMGYTATWAGLAVA 313 P V+ L + F +G + + G ++P ++ + G + Sbjct: 240 IRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVII 299 Query: 314 PIGLLPVIMS-PFVGKYAHRFDLRVLA--GLAFLAIGTSCYMRAGFTSEVDFQHVALVQL 370 G + VI+ G R + G+ FL++ ++ A F E + ++ + Sbjct: 300 FPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS---FLTASFLLETTSWFMTIIIV 356 Query: 371 FMGIGVALFFMPTLSILLSDLPPHQIADGSGLATFLRTLGGSF 413 F+ G++ +I+ S L + G L F L Sbjct: 357 FVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 93.2 bits (231), Expect = 7e-25 Identities = 68/254 (26%), Positives = 114/254 (44%), Gaps = 17/254 (6%) Query: 4 VIVITGGSRGIGAATALLAARHGYRICINYHTDDQAAQNILGQVRALGAEAIAVRADASV 63 + ITG ++GIG A A A G I + + + ++ ++A A A AD Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 64 EDEIIQLFQRVDEELGPVTALVNNAGTIGQQSRVEEMSEFRLLKIMKTNVVGPMLCAKHA 123 I ++ R++ E+GP+ LVN AG + + + +S+ N G ++ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 124 LLRMAHRHGGQGGAIVNVSSMAARLGSPNEYVD-YAASKGALDTFTIGLAKEVAGEGVRV 182 M R + G+IV V S A G P + YA+SK A FT L E+A +R Sbjct: 128 SKYMMDR---RSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 183 NGVRPGYIHTGFH-----ALSGDPDRV----SKLEPGLPMGRGGRPEEVAEAILWLLSDK 233 N V PG T +G + + G+P+ + +P ++A+A+L+L+S + Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 234 ASYSTGSFIDLSGG 247 A + T + + GG Sbjct: 243 AGHITMHNLCVDGG 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.8 bits (189), Expect = 9e-17 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 570 RILLIEDQAALRMVVGEVLEELGYQVDAFENGPTALAHLQRGERPDLLLSDIGLPGGLNG 629 IL+ +D AA+R V+ + L GY V N T + G+ DL+++D+ +P N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE-NA 62 Query: 630 RQVAERCRERYPDIKVLFITGYDESAALSDGQLLQGTLVLTKPFELEVLAERVRELLE 687 + R ++ PD+ VL ++ + L KPF+L L + L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.9 bits (158), Expect = 3e-13 Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 2/107 (1%) Query: 428 RVMLVEDQSAMRLVLVEVLTELGHEVQAFDVGRPALEALHAGPLPDLLITDVGLPGGIDG 487 +++ +D +A+R VL + L+ G++V+ + AG DL++TDV +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE-NA 62 Query: 488 YQLAEAFQGFQANAPVLLITGYDAAELPPSTRPDSRTELLSKPFDLQ 534 + L + + + PVL+++ + + L KPFDL Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 46.7 bits (111), Expect = 7e-08 Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 24/149 (16%) Query: 34 VLIEGPRGMAKSTLARGLADL--LGEGPFVTLPLGASEERLVGTLDLDAAL-GQGKAQFS 90 ++I G G K +AR L D GPFV + + A L +++ L G K F+ Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDL-----IESELFGHEKGAFT 217 Query: 91 ------PGVLAQADGGVLYVDEVNLLPDTLVDLLLDVAASGTNRIERDGISHRHNARFVL 144 G QA+GG L++DE+ +P LL V G G + + Sbjct: 218 GAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGE--YTTVGGRTPIRSDVRI 275 Query: 145 IGTMNP------EEGELRPQLLDRFGLNV 167 + N +G R L R LNV Sbjct: 276 VAATNKDLKQSINQGLFREDLYYR--LNV 302
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 399 bits (1026), Expect = e-138 Identities = 167/482 (34%), Positives = 226/482 (46%), Gaps = 59/482 (12%) Query: 9 RLLIVDPCDDCHR---LLPGLRNAGWDVDSCMLGAALDHPCDVGLLRLQATHLRHPDAVK 65 +L+ D DD L L AG+DV A L G L T + PD Sbjct: 5 TILVAD--DDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD--- 59 Query: 66 DMIKRSNTEWIAVLSAEQLRMP-----AFGDF------VCEWFFDFHTLPFDVSRVQVTL 114 + + + + + +P A F + +D+ PFD++ + + Sbjct: 60 ----ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 115 GRAFGMARLRGKGAVKVDEATHELLGESRPIRELRKLLGKLAPTESPVLIRGESGTGKEL 174 GRA + R + L+G S ++E+ ++L +L T+ ++I GESGTGKEL Sbjct: 116 GRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKEL 175 Query: 175 VARTLHRQSQRSEQPFIAINCGAIPEHLIQSELFGHEKGAFTGAHQRKAGRIEAAHGGTL 234 VAR LH +R PF+AIN AIP LI+SELFGHEKGAFTGA R GR E A GGTL Sbjct: 176 VARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTL 235 Query: 235 FLDEIGDLPLELQANLLRFLQEKHIERVGGSQPIPVDVRVLAATHVDLERAIEQGRFRED 294 FLDEIGD+P++ Q LLR LQ+ VGG PI DVR++AAT+ DL+++I QG FRED Sbjct: 236 FLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFRED 295 Query: 295 LYYRLNVLQVVTAPLRDRHGDLSMLASHFAHFYSLETGRRPRSFSDHALAAMGRHDWPGN 354 LYYRLNV+ + PLRDR D+ L HF E G + F AL M H WPGN Sbjct: 296 LYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGN 354 Query: 355 VRELANRVRRGLVLAEGRQIEAQDLGLQLLDQ---------------------------- 386 VREL N VRR L I + + +L + Sbjct: 355 VRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQ 414 Query: 387 -------EQQPLGTLEEYKQRAERQALCDVLNRHSDNLSVAAKVLGISRPTFYRLLHKHQ 439 P G + E + L N AA +LG++R T + + + Sbjct: 415 YFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELG 474 Query: 440 IR 441 + Sbjct: 475 VS 476
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 2e-06 Identities = 20/115 (17%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 100 KAALARAEADLARAQSVMFEAQARVRRYEPLVKIEAVSQQDFDTASADLRSGQAAVRSAQ 159 + A +L +S + + ++ + + + + V+Q + LR + Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAK--EEYQLVTQLFKNEILDKLRQTTDNIGLLT 315 Query: 160 ADVETARLNLGYATVKAPISGRIGRALV-TEGALVGQGDATLMARIQQLDPIYVD 213 ++ + ++AP+S ++ + V TEG +V + TLM + + D + V Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVT 369 Score = 42.1 bits (99), Expect = 3e-06 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 8/121 (6%) Query: 47 PLTLAATLPGRVEPM-RVAEVRARVAGIVLHKRFEEGADVKAGDVLFQIDPAPFKAALAR 105 + + AT G++ R E++ IV +EG V+ GDVL ++ Sbjct: 79 QVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTA-------LG 131 Query: 106 AEADLARAQSVMFEAQARVRRYEPLVKIEAVSQQDFDTASADLRSGQAAVRSAQADVETA 165 AEAD + QS + +A+ RY+ L + +++ + + Sbjct: 132 AEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLI 191 Query: 166 R 166 + Sbjct: 192 K 192
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1157 bits (2994), Expect = 0.0 Identities = 509/1035 (49%), Positives = 708/1035 (68%), Gaps = 8/1035 (0%) Query: 1 MSKFFIKRPNFAWVVALFISLAGLLVIPTLPVAQYPNVAPPQITITATYPGASAKVLVDS 60 M+ FFI+RP FAWV+A+ + +AG L I LPVAQYP +APP ++++A YPGA A+ + D+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTSIIEESLNGAKNLLYFESTNNSNGMAEVVVTFEPGTDPELAQVDVQNRLKKAEARMPQ 120 VT +IE+++NG NL+Y ST++S G + +TF+ GTDP++AQV VQN+L+ A +PQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 AVITQGIQVEQTSAGFLLIYALSYKEGAGQADTTALGDYAARNINNELRRVPGVGKLQFF 180 V QGI VE++S+ +L++ D + DY A N+ + L R+ GVG +Q F Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDD--ISDYVASNVKDTLSRLNGVGDVQLF 178 Query: 181 SSEAAMRVWVDPQKLVGYGLSIDDVSNAIRGQNVQVPAGSFGSAPGSSQQELTATLAVQG 240 ++ AMR+W+D L Y L+ DV N ++ QN Q+ AG G P Q+L A++ Q Sbjct: 179 GAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 241 TLDDPQAFGRVVLRANPDGSLVRLADVARLEVGMESYNFSSRLNGKPAVAGAVQLAPGAN 300 +P+ FG+V LR N DGS+VRL DVAR+E+G E+YN +R+NGKPA ++LA GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 301 ALKTADLVKERLAELSAFFPEGVEYSVPYDTSRFVDVAIEKVIHTLLEAMVLVFLVMFLF 360 AL TA +K +LAEL FFP+G++ PYDT+ FV ++I +V+ TL EA++LVFLVM+LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 361 LQNIRYTLIPSIVVPVCLLGTLMVMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVER 420 LQN+R TLIP+I VPV LLGT ++ G+S+N +TMFGMVLAIG+LVDDAIVVVENVER Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 421 IMAEEGLSPVDATIKAMGQVSGAIIGITLVLSAVFMPLAFMSGSVGVIYQQFSLSLAVSI 480 +M E+ L P +AT K+M Q+ GA++GI +VLSAVF+P+AF GS G IY+QFS+++ ++ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 481 LFSGFLALTFTPALCATMLKPVAPGHHE-KRGFFGAFNRGFARLTERYSVMNNALVRRAG 539 S +AL TPALCAT+LKPV+ HHE K GFFG FN F Y+ ++ G Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 540 RYMLLYAGILAMLGYFYLRLPESFVPVEDQGYAIVDVQLPPGASRVRTDATGQALEQFLM 599 RY+L+YA I+A + +LRLP SF+P EDQG + +QLP GA++ RT + + + Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 600 SREA--LASAFLVSGFSFSGMGENAALAFPTYKDWSVRS-AEQSVDAETQAINAQFASHG 656 E + S F V+GFSFSG +NA +AF + K W R+ E S +A + Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 657 DGTIMAVNPPPIDGLGNAGGFALRLLDRGGLGREALLAARDKILGEANGNPVILYAMM-E 715 DG ++ N P I LG A GF L+D+ GLG +AL AR+++LG A +P L ++ Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 716 GLAEAPQLRVDIDREKARALGVPFETINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGE 775 GL + Q ++++D+EKA+ALGV IN T++TA G +NDF + GR +++ VQA+ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 776 RMTPESVLRLYAPNVDGQQVPFSSFVTTRWEEGPVQIVRYNGYPSIRISGDATPGYSTGQ 835 RM PE V +LY + +G+ VPFS+F T+ W G ++ RYNG PS+ I G+A PG S+G Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 836 AMAEMERLVSELPPGIGYAWTGLSYQEKVSSGQASSLFALAILVVFLLLVALYESWAIPL 895 AMA ME L S+LP GIGY WTG+SYQE++S QA +L A++ +VVFL L ALYESW+IP+ Sbjct: 839 AMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 896 TVMLIVPIGALGAVLAVMVTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEK-GYS 954 +VML+VP+G +G +LA + NDVYF VGL+T IGL+AKNAILIVEFAK+L EK G Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 955 LRDAAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGV 1014 + +A + A R+R RPI+MTS+AFILGV+PLAI++GAG+ +Q A+G GV+GGM+SATLL + Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1015 LFVPICFVWVLSLLK 1029 FVP+ FV + K Sbjct: 1019 FFVPVFFVVIRRCFK 1033 Score = 83.7 bits (207), Expect = 2e-18 Identities = 91/526 (17%), Positives = 172/526 (32%), Gaps = 45/526 (8%) Query: 530 MNNALVRRAGRYMLLYAGILAMLGYFYLRLPESFVPVEDQGYAIVDVQLP-PGAS-RVRT 587 M N +RR +L ++ L+LP + P V V PGA + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYP--TIAPPAVSVSANYPGADAQTVQ 58 Query: 588 DATGQALEQFLMSREALASAFLVSGFSFSGMGENAALAFPTYKDWSVRSAEQSVDAETQA 647 D Q +EQ + + L +S S S L F + D A+ V + Q Sbjct: 59 DTVTQVIEQNMNGIDNLMY---MSSTSDSAGSVTITLTFQSGTD--PDIAQVQVQNKLQL 113 Query: 648 INAQFASHGDGTIMAVNPPPIDGLGNAGGFALRLL---DRGGLGREALLAARDKILGEAN 704 V I ++ + + D G ++ + +N Sbjct: 114 ATPLLPQ-------EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDI-----SDYVASN 161 Query: 705 GNPVILYAMMEGLAEAP------QLRVDIDREKARALGVPFETINSTLATA---FGSAVI 755 + + + G+ + +R+ +D + + + + L + + Sbjct: 162 VKDTL--SRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQL 219 Query: 756 NDFTNAGRQQRVVVQAEQGERMTPESVLRLY-APNVDGQQVPFSSFVTTRW-EEGPVQIV 813 QQ Q PE ++ N DG V E I Sbjct: 220 GGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIA 279 Query: 814 RYNGYPSIRISGDATPGYST----GQAMAEMERLVSELPPGIGYAWTGLSYQEKVSSGQA 869 R NG P+ + G + A++ L P G+ + V Sbjct: 280 RINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYP-YDTTPFVQLSIH 338 Query: 870 SSLFAL--AILVVFLLLVALYESWAIPLTVMLIVPIGALGAVLAVMVTGMPNDVYFKVGL 927 + L AI++VFL++ ++ L + VP+ LG + G + G+ Sbjct: 339 EVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGM 398 Query: 928 ITIIGLAAKNAILIVE-FAKELWEKGYSLRDAAIEAARLRFRPIVMTSMAFILGVVPLAI 986 + IGL +AI++VE + + E ++A ++ +V +M +P+A Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 987 ASGAGAASQRAIGTGVIGGMLSATLLGVLFVPICFVWVLSLLKRKP 1032 G+ A R ++ M + L+ ++ P +L + + Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEH 504
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 32.3 bits (73), Expect = 7e-04 Identities = 17/141 (12%), Positives = 45/141 (31%), Gaps = 7/141 (4%) Query: 24 ATLKELAETAGVSKATLHRFCGTRDNLV-AMLENHGEQVLNQVIANAALHTAAPLEAVRH 82 +L E+A+ AGV++ ++ + +L + E + + A PL +R Sbjct: 32 TSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLRE 91 Query: 83 LI------AEHLKHREMLVFLMFQYRPDTLLGDSEDRRWLTYTRAMDAFFLRAQQMGVLR 136 ++ + R +L+ ++F + + + + Sbjct: 92 ILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEA 151 Query: 137 IDISAAVFTEVFITQIYAMVD 157 + A + T + + Sbjct: 152 KMLPADLMTRRAAIIMRGYIS 172
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 27.1 bits (60), Expect = 0.044 Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 9/77 (11%) Query: 14 RLQNQGFTLNEQTLSRRLERVAA-HVP--QGARLADIGSDHGYLPVALMLRGVLEAAVAG 70 L+ G+ + + T+SR ++ + VP G+ + +D + P++ + R +++A V Sbjct: 28 ILKKDGYNVTQATVSRDIKELHLVKVPTNNGSYKYSLPADQRFNPLSKLKRSLMDAFVKI 87 Query: 71 E------VAETPFASAQ 81 + V +T +AQ Sbjct: 88 DSASHLIVLKTMPGNAQ 104
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1129 bits (2921), Expect = 0.0 Identities = 540/1031 (52%), Positives = 737/1031 (71%), Gaps = 7/1031 (0%) Query: 1 MPQFFIDRPVFAWVVALFILLAGALAIPQLPVAQYPNVAPPQVEIYAVYPGASAATMDES 60 M FFI RP+FAWV+A+ +++AGALAI QLPVAQYP +APP V + A YPGA A T+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVSLIEQELNGADNLLYFESQS-SLGSATITATFAPGTNPELAQVDVQNRLKVVESRLPR 119 V +IEQ +NG DNL+Y S S S GS TIT TF GT+P++AQV VQN+L++ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 PVTQQGLQVEKVSTGFLLLATLTSEDGKLDETALSDILARNVMDEIRRLKGVGKAQLYGS 179 V QQG+ VEK S+ +L++A S++ + +SD +A NV D + RL GVG QL+G+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 ERAMRIWIDPRKLIGFNLTPNDVAEAIAAQNAQVAPGSIGDLPSRDTQEITANVVVKGQL 239 + AMRIW+D L + LTP DV + QN Q+A G +G P+ Q++ A+++ + + Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 STPEEFAAIVLRANLDGSTVTIGDVARVEIGAQEYQYGTRLNGKPATAFSVQLSPGANAM 299 PEEF + LR N DGS V + DVARVE+G + Y R+NGKPA ++L+ GANA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 ETATLVRAKMQDLARYFPEGVKYDIPYDTSPFVKVSIEQVINTLFEAMLLVFAVMFLFLQ 359 +TA ++AK+ +L +FP+G+K PYDT+PFV++SI +V+ TLFEA++LVF VM+LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NLRYTLIPTLVVPVALMGTFAVMLAMGFSVNVLTLFGMVLAIGILVDDAIVVVENVERIM 419 N+R TLIPT+ VPV L+GTFA++ A G+S+N LT+FGMVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 AEEGLPPKEATRKAMGQISGAIIGITLVLVAVFLPMAFMQGSVGVIYQQFSLSMAVSILF 479 E+ LPPKEAT K+M QI GA++GI +VL AVF+PMAF GS G IY+QFS+++ ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCATLLKPVAKGEHHARKGFFGWFNRRFESMSNGYQRWVVQALKRSGRY 539 S +AL LTPALCATLLKPV+ H + GFFGWFN F+ N Y V + L +GRY Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 540 LVVYAVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQLPPGASRMRTEQVAAQIE--AHNA 597 L++YA+++A + F +LP++FLP EDQG +T IQLP GA++ RT++V Q+ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 598 EEPGVGNTTLILGFSFSGSGQNAALAFTTLKDWSER-GTDDSAQSIADRATMAFSQLKDA 656 E+ V + + GFSFSG QNA +AF +LK W ER G ++SA+++ RA M +++D Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 IAFSVLPPPIDGLGESTGFEFRLQDRGGMGHAELMAARDQLLASAGKSKV-LTNVREASL 715 P I LG +TGF+F L D+ G+GH L AR+QLL A + L +VR L Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 AESPQVQLEIDRRQANALGVSFADIGTVLDVAVGSSYVNDFPNQGRMQRVVVQAEGNQRS 775 ++ Q +LE+D+ +A ALGVS +DI + A+G +YVNDF ++GR++++ VQA+ R Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 QVEDLLKIHVRNTSGKMVPLGAFVQAKWVSGPVQLTRYNGYPAVSISGEPAAGYSSGEAM 835 ED+ K++VR+ +G+MVP AF + WV G +L RYNG P++ I GE A G SSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 AEVERLVAQLPAGAGLEWTGLSLQERLSGSQAPMLMALSLLVVFLCLAALYESWSIPTAV 895 A +E L ++LPAG G +WTG+S QERLSG+QAP L+A+S +VVFLCLAALYESWSIP +V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 LLVVPLGVLGAVLAVTLRGMPNDVFFKVGLITLIGLSAKNAILIIEFAKHLVD-QGVDAV 954 +LVVPLG++G +LA TL NDV+F VGL+T IGLSAKNAILI+EFAK L++ +G V Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 DAAVQAARLRLRPIVMTSLAFILGVVPLAIASGASSASQQAIGTGVIGGMLSAT-LAVVF 1013 +A + A R+RLRPI+MTSLAFILGV+PLAI++GA S +Q A+G GV+GGM+SAT LA+ F Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1014 VPVFFVVVMRL 1024 VPVFFVV+ R Sbjct: 1021 VPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.6 bits (95), Expect = 8e-06 Identities = 30/209 (14%), Positives = 69/209 (33%), Gaps = 21/209 (10%) Query: 64 RTAEVRARVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATL--AKAEATLYQ 121 R+ E++ +V + + +EG V++GDVL + +AD +++L A+ E T YQ Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 122 ARLQEQRYRELVDDKAVSRQEYDNAKASFLQADAAVAEAKAALERARL---NLGYATVTA 178 + +L + K + N + ++ + + + + + L A Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRA 214 Query: 179 PISGRIGRAQVTEGALVGQNETTP----------------LATIQQLDPIHADVTQSTRE 222 + R E + L + ++ + Sbjct: 215 ERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQ 274 Query: 223 LNALRRALRAGELQQVGDSQARATLIQDD 251 L + + + + + +Q I D Sbjct: 275 LEQIESEILSAKEEYQLVTQLFKNEILDK 303 Score = 36.3 bits (84), Expect = 2e-04 Identities = 17/100 (17%), Positives = 40/100 (40%), Gaps = 10/100 (10%) Query: 102 KADHDSARATLAKAEATLYQARLQEQRYRELVDDKAVSRQEYDNAKASFLQADAAVAEAK 161 + ++ L + E+ + A+ + Q +L ++ + + Q + Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK---------LRQTTDNIGLLT 315 Query: 162 AALERARLNLGYATVTAPISGRIGRAQV-TEGALVGQNET 200 L + + + AP+S ++ + +V TEG +V ET Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 2e-21 Identities = 30/136 (22%), Positives = 63/136 (46%) Query: 2 PNILLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQKPDLVILDLMLPGIDGL 61 IL+ +DD+A+ ++ L R + V++ + + DLV+ D+++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QLCRLLRQESQSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121 L +++ LP+L+++A++ + E GA DY+ KP + L+ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 VNEPRLDNDLILIGGL 137 +L++D L Sbjct: 124 RRPSKLEDDSQDGMPL 139
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.005 Identities = 32/187 (17%), Positives = 66/187 (35%), Gaps = 43/187 (22%) Query: 259 ELDELVLELLSYSRLYNADQARERVEVSL---LELVDSVLG----SFAEELDGRGIQWEV 311 + E++ L R Y+ + R +VSL L +VDS L F + L + ++ Sbjct: 192 KAREMLTSLSELMR-YSLRYSNAR-QVSLADELTVVDSYLQLASIQFEDRLQ---FENQI 246 Query: 312 RAEGD---LPRFVLDPRLTARAVQNLVRNAMRYCDESLLLRLR-LEEDGACLLTVEDDGI 367 +P ++ V+N +++ + + + L+ +++G L VE+ G Sbjct: 247 NPAIMDVQVPPMLVQT-----LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGS 301 Query: 368 GIPVEERERIFQPFYRLDRSRDRNTGGFGLGLAISRRAIE---GQGGTLTVAQSALGGAQ 424 +E G GL R ++ G + ++ G Sbjct: 302 LALKNTKE------------------STGTGLQNVRERLQMLYGTEAQIKLS-EKQGKVN 342 Query: 425 FRIRLPA 431 + +P Sbjct: 343 AMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.6 bits (173), Expect = 6e-15 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 7/126 (5%) Query: 584 MARGERLLLVDDELNLRAVMREYLTERGFNVTDVGDANTALDRFRHGGPFDLVITDIGLP 643 M +L+ DD+ +R V+ + L+ G++V +A T G DLV+TD+ +P Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMP 58 Query: 644 GGFSGRQVAKAMRMQLEQQKILFITGYAD--QPIEAQLLGQPGTALMNKPFSLADLADEA 701 + + ++ +L ++ I+A G + KPF L +L Sbjct: 59 DE-NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKG--AYDYLPKPFDLTELIGII 115 Query: 702 IRVLDE 707 R L E Sbjct: 116 GRALAE 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.0 bits (231), Expect = 3e-22 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 420 HVLVVEDDPDVRHLLCQALRDDGFPCHSAANANEGLKVLRSAQAVDLLVSDVGLPGMNGR 479 +LV +DD +R +L QAL G+ +NA + + + DL+V+DV +P N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDENAF 63 Query: 480 QLAEIARSLRPHLPVLFITGYAETAMAREGFLGTGMHLICKPFELKQLQAQVTQILGKP 538 L + RP LPVL ++ A + + KPF+L +L + + L +P Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Score = 31.7 bits (72), Expect = 0.007 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 2/108 (1%) Query: 24 SNLLARAGIESLCAVDMANLQARLAEGAGLAIIAEQVFSHGPCESLQAYIDQQPSWSDLP 83 + L+RAG + + A L +A G G ++ + V L I + DLP Sbjct: 20 NQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKA--RPDLP 77 Query: 84 IVLVTQGAWSATGATNHPVGNLALLIAPFEHAQLLHMTQSALRNRRRQ 131 +++++ T G L PF+ +L+ + AL +R+ Sbjct: 78 VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125
>adhesinb#Adhesin B signature. Length = 310 Score = 34.8 bits (80), Expect = 4e-04 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 252 WLNRHEQREYALLALSRAVELDPDNTD-YRYTLAVTLHELEQLDAAQKQLETVLNRQPAN 310 WLN YA R E DP N + Y L + +L LD K+ + N P Sbjct: 142 WLNLENGIIYAQNIAKRLSEKDPANKETYEKNLKAYVEKLSALD---KEAKEKFNNIPGE 198 Query: 311 RRARV 315 ++ V Sbjct: 199 KKMIV 203
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 80.8 bits (199), Expect = 3e-21 Identities = 38/184 (20%), Positives = 79/184 (42%), Gaps = 12/184 (6%) Query: 1 MVRRTRAEMEETRATLLATARQCFTALGYADTSMDDLTAQAGLTRGALYHHFGDKQGLLT 60 M R+T+ E +ETR +L A + F+ G + TS+ ++ AG+TRGA+Y HF DK L + Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AVVEQIDAEMDQRLQAISEA-AEDAWEGFRQRCRVYLEMALEPEIQRIVLR--------- 110 + E ++ + + D R+ LE + E +R+++ Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 111 DAKAVLGGASPGSQRQCIASMQRLIADLMQQGVIAEA-DPQALASLIYGSLAE-AACWIA 168 AV+ A + +++ + ++ ++ + A ++ G ++ W+ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 169 QGED 172 + Sbjct: 181 APQS 184
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1102 bits (2852), Expect = 0.0 Identities = 434/1048 (41%), Positives = 647/1048 (61%), Gaps = 25/1048 (2%) Query: 4 SKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETV 63 + FFI RPIFA VL+++L++AG++++ QLP+++YP + PP V V AN+PGA+ + + +TV Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 AAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKLPEE 123 +EQ + G++N++YMSS S + G +T+T+TF GTD D AQVQVQN++ P LP+E Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 124 VTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMG 183 V + GI+V+K+S MV S + +S+Y N+KD L+RL GVGDVQLFG Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-A 180 Query: 184 DYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRL 243 Y++R+WLD + LT DV+ ++ QN Q+AAGQLG PA SI Q R Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 244 VNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGSNAI 303 N EEF + +R +DG + RLKD+ARVELG Y + + +N +PA + I G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 304 EISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILFLQ 363 + + ++AK+AEL+ FP+GM YD T FV+ SI VV TLFEA++LV LV+ LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 364 TWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVER-N 422 RA++IP +AVPV L+GTFA++ FG+S+N L++FG+VLAIG++VDDAIVVVENVER Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 423 IGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVI 482 + L P EAT+K+MS++ G ++ A+VL AVF+P AF G TG Y+QF++TI + + Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 483 SAFNSLTLSPALAAVLLK----DHHAPKDRFSRFLDKLLGSWLFAPFNRFFDRASHRYVG 538 S +L L+PAL A LLK +HH K F F FN FD + + Y Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGF------------FGWFNTTFDHSVNHYTN 528 Query: 539 GVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEA 598 V +++ S+G L +YA ++ + F P+ F+P +D+ + QLP A+ +RT+ Sbjct: 529 SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588 Query: 599 VIKRMSEIALKQPGVADSVAF--PGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAI 656 V+ ++++ LK F G S +G + N+G+ F LKP++ER SA A+ Sbjct: 589 VLDQVTDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 657 AAALNAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAK-S 715 + I+D ++ F P + LGT GF ++ D+ LG++AL + ++ + Sbjct: 647 IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706 Query: 716 HNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGR 775 + L + + + Q +D+EKA+ GV+++DI T+ LG Y NDF GR Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 776 TYQVNVQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEI 835 ++ VQA+ +FR+ E + +L VR+ GEM+P + F G R+ YNG + EI Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEI 826 Query: 836 NGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFL 895 G AAPG SSG A A +E L +LP G+ ++WT ++YQ+ LSGN A + + ++ FL Sbjct: 827 QGEAAPGTSSGDAMALMEN-LASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFL 885 Query: 896 VLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIV 955 LAA YESWS+P++V+L+VP+ ++ + + N+++ +GL+ +GL+ KNAILIV Sbjct: 886 CLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIV 945 Query: 956 EFAKDEQAK-GLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVA 1014 EFAKD K G + A L A R+RLRPILMTS+AFI+GV+PL S+GAGS ++A+G+ Sbjct: 946 EFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIG 1005 Query: 1015 VFSGMIGVTVFGLFLTPVFFFLIRRFVE 1042 V GM+ T+ +F PVFF +IRR + Sbjct: 1006 VMGGMVSATLLAIFFVPVFFVVIRRCFK 1033 Score = 84.1 bits (208), Expect = 2e-18 Identities = 65/322 (20%), Positives = 126/322 (39%), Gaps = 20/322 (6%) Query: 739 IDREKAKTHGVAITDIFDTL-----QVYLGSLYTNDFNRFGRTYQVNVQAEQQFRLDAEQ 793 +D + + + D+ + L Q+ G L G+ ++ A+ +F+ + E+ Sbjct: 188 LDADLLNKYKLTPVDVINQLKVQNDQIAAGQL-GGTPALPGQQLNASIIAQTRFK-NPEE 245 Query: 794 IGQLKVRNNL-GEMIPLATFLKVSDTSGPDRVM-HYNGFITAEINGAAAPGYSSGQ-AEA 850 G++ +R N G ++ L +V V+ NG A + A G ++ A+A Sbjct: 246 FGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKA 305 Query: 851 AIEKL--LKEELPNGM----TFEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAAQYESW 904 KL L+ P GM ++ T I L ++L FLV+ ++ Sbjct: 306 IKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLF---EAIMLVFLVMYLFLQNM 362 Query: 905 SLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDEQAK 964 L + VP+ LL + G N T G+++ +GL +AI++VE + + Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 965 -GLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAVFSGMIGVT 1023 L P A ++ ++ ++ +P+ F G+ + + + S M Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 1024 VFGLFLTPVFFFLIRRFVERRQ 1045 + L LTP + + V Sbjct: 483 LVALILTPALCATLLKPVSAEH 504
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 55.2 bits (133), Expect = 2e-10 Identities = 19/102 (18%), Positives = 43/102 (42%) Query: 65 EVRPRVSGQIDQVAFTEGAQVKKGDLLFQIDPRPFQAEVRRLEAQLQQAKATAIRSANEA 124 E++P + + ++ EG V+KGD+L ++ +A+ + ++ L QA+ R + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 125 RRGERLRDSNAISAELAESRSSAAAEARAGVDAIQAQLDLAR 166 R E + + ++ + E I+ Q + Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Score = 38.7 bits (90), Expect = 4e-05 Identities = 15/115 (13%), Positives = 37/115 (32%), Gaps = 9/115 (7%) Query: 104 RRLEAQLQQAKATAIRSANEARRGERLRDSNAISAELAESR-------SSAAAEARAGVD 156 LE + + +A +++ + + + E + + Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIG 312 Query: 157 AIQAQLDLARLNLSFTRVTAPISGRVSRAQ-FTAGNIVSADVTPLTSVVSTDKVY 210 + +L + + AP+S +V + + T G +V+ L +V D Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA-ETLMVIVPEDDTL 366
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 259 bits (663), Expect = 3e-85 Identities = 124/403 (30%), Positives = 211/403 (52%), Gaps = 10/403 (2%) Query: 3 YSLKALGRQG-VVQLQIDAEDAEQARRQAEDQGLRVLSLRGSGGSLR-----GMAWRREA 56 Y +AL QG + +A+ A QAR+ ++GL LS+ + G + G++ RR+ Sbjct: 4 YHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKI 63 Query: 57 AF---DLVLFSQELSTLLNAGLPLIDALESLAEKAPSPATRKVLAELVRQLYEGRSLSQA 113 DL L +++L+TL+ A +PL +AL+++A+++ P +++A + ++ EG SL+ A Sbjct: 64 RLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADA 123 Query: 114 LGQQPRVFPPLYVALVQSSERTGALGDALARYISYRQRLDLVRQKLVGASVYPLLLLLVG 173 + P F LY A+V + E +G L L R Y ++ +R ++ A +YP +L +V Sbjct: 124 MKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVA 183 Query: 174 GGVVLFLLGYVVPRFSQVFEGMGTELPWLSRVLMQIGLFLHAQQLPLALGTVGGVTALWL 233 VV LL VVP+ + F M LP +RVLM + + + L + G A + Sbjct: 184 IAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRV 243 Query: 234 LRRHPRVRHWASCQLRRLPALHQRLMMYELARFYRSLGILLQGGIPILTAMGMARGLLGS 293 + R + R +L LP + + AR+ R+L IL +P+L AM ++ ++ + Sbjct: 244 MLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMSN 303 Query: 294 AAA-QGLAQASQRVGEGLPLSDALEAGHLVTPVSLRLLRAGEQSGNLGEMLERCADFHDQ 352 A L+ A+ V EG+ L ALE L P+ ++ +GE+SG L MLER AD D+ Sbjct: 304 DYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQDR 363 Query: 353 EIGRWVEWFVKLFEPLLMTFIGLLIGLIVILMYMPIFELASSI 395 E + + LFEPLL+ + ++ IV+ + PI +L + + Sbjct: 364 EFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 185 bits (472), Expect = 8e-64 Identities = 59/141 (41%), Positives = 87/141 (61%), Gaps = 7/141 (4%) Query: 3 RRTNPQRGFTLLELLVVLVVLGLLAGIVAPKYFSQLGRSEAKVARAQIEGLSKALDLYRL 62 R T+ QRGFTLLE++VV+V++G+LA +V P +++ + A + I L ALD+Y+L Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61 Query: 63 EVGHYPNSEQGLQALVVAPS---GETRWTGPYLQKAVPQDPWGRPYIYRQPGENGGEYDL 119 + HYP + QGL++LV AP+ + K +P DPWG Y+ PGE+G YDL Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGA-YDL 120 Query: 120 LSMGKDGQPGGDGENAEITSW 140 LS G DG+ G + +IT+W Sbjct: 121 LSAGPDGEMGTED---DITNW 138
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 51.4 bits (123), Expect = 3e-09 Identities = 72/331 (21%), Positives = 120/331 (36%), Gaps = 27/331 (8%) Query: 21 AVIAGLLLFYLLFTGYFMLRPVRETMGVAGGVDNLQWLFTGTFIATLA-----CLPLFGW 75 +I L L G ++ PV + N G +A A C P+ G Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 76 LASKVQRRHILPWAYGFFASNLLLFAALFAGNPDDLWTARAFYIWLSVFNLLTISLAWSV 135 L+ + RR +L + A + + A A L+ R ++ T ++A + Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMA--TAPFLWVLYIGRI----VAGITGATGAVAGAY 119 Query: 136 LADLFSTAQGKRLFGLLAAGASLGGLSGPLFGALLVAPLGHAGLLVLAAAFLIGSIVAAL 195 +AD+ + R FG ++A G ++GP+ G L+ HA AA + + Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCF 179 Query: 196 FLQRWRARQPLPAQTERLASRPLGGNPFAG---ATAVLRSPYLLGIALFVVLLASVSTFL 252 L P + ER R NP A A + L+ + + L+ V L Sbjct: 180 LL-------PESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL 232 Query: 253 YFEQARIVSETFTDRTRQTQVFGLIDTVVQALAILTQVFITGRLARRLGVGVLLVAVPVV 312 + + F G+ L L Q ITG +A RLG L+ + Sbjct: 233 W---VIFGEDRF---HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIA 286 Query: 313 MAAGFLWLALAPVFAVFVVVMVVRRAGEYAL 343 G++ LA A + +MV+ +G + Sbjct: 287 DGTGYILLAFATRGWMAFPIMVLLASGGIGM 317
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 30.9 bits (70), Expect = 0.005 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 5/45 (11%) Query: 55 KAMGRDVPGLRAFPLLDAAVENPSTQHALWLWLRGNERGDLLLRA 99 +M LR + +Q L W+ + L+R+ Sbjct: 180 ASMAAT---LRKLLTSQRL--SARSQRQLLQWMVDDRVAGPLIRS 219
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.3 bits (81), Expect = 4e-05 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 77 LHLHEISVCREGQGQGVGRRLLRQVVDAARCAGVRELTL-TTFVDVPWNAPFYARFGF 133 + +I+V ++ + +GVG LL + ++ A+ L L T +++ FYA+ F Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINIS-ACHFYAKHHF 146
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.004 Identities = 20/186 (10%), Positives = 56/186 (30%), Gaps = 9/186 (4%) Query: 49 ELNGQQPVASEGGAALSDVLSRLVGQLATQLQDEADLKIEQAESTFTQQRETLEAQLEVA 108 ELN + +V V T L E + + + A+ Sbjct: 161 ELNKLPELKLPDEPYFQNVSEEEV-LRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTV 219 Query: 109 QQALNAAHQQHKIDA---AALAAETEKRLSTQSTLQAEQLRSASLNQSLGELQVRLTDKD 165 +N +++ ++ K+ + + ++ + L + +L + Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 166 EQVKSLEDKHRHA-----RDALEHYRNASREQREQEQRRHEAQLQQMQVEIRQLQQGMIV 220 ++ S +++++ + L+ R + + + +Q IR + Sbjct: 280 SEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQ 339 Query: 221 KQDELT 226 + T Sbjct: 340 QLKVHT 345
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.039 Identities = 27/216 (12%), Positives = 64/216 (29%), Gaps = 18/216 (8%) Query: 193 QLDAQKDLLLSQASQARAALKRWTGQDADVQARAFPQWAVNATDYLHALHA--------- 243 +A S QAR R+ ++ P+ + Y + Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 244 -HPALAVYGAMSREAEAQVHQAQAEKKSDWGWQLDYQRRGPAFSNMVSVQVSFQLPLFTG 302 + + + E + + +AE+ + L R S + ++ L Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLT----VLARINRYENLSRVEKSRLDDFSSLLH- 245 Query: 303 SRQDPMIAARRAQVRQLEDEQD-AALREHTAQLEADMAEYQ--RLQRAVARSRDTLLPLA 359 + A + + +E + + Q+E+++ + + L L Sbjct: 246 KQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR 305 Query: 360 EARVRLALADYRAGKSALSEVLAARRQRVDARLQDL 395 + + L K+ + + R V ++Q L Sbjct: 306 QTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQL 341
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 1e-06 Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 33/168 (19%) Query: 192 ATLIDRVARSGKVQALVTLVAPTAGVIQALELR-PGMTVLPGATLARINGVTNV-WLEAA 249 L +A++ + Q + AP + +Q L++ G V TL I + + A Sbjct: 312 GLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTAL 371 Query: 250 VPEAQAQGLREGLAVQAELPAYPG---HALTGKLTALLADADLQSRT-----LRLRIELP 301 V + G ++ A+P L GK+ + DA R + + IE Sbjct: 372 VQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEEN 431 Query: 302 NLEG-----RLRPGMTAQVTLHPVGQADDSLLIPAEAVIRTGKRNVVM 344 L L GM A I+TG R+V+ Sbjct: 432 CLSTGNKNIPLSSGM------------------AVTAEIKTGMRSVIS 461 Score = 29.8 bits (67), Expect = 0.028 Identities = 14/125 (11%), Positives = 42/125 (33%), Gaps = 16/125 (12%) Query: 197 RVARSGKVQALVTLVAPTAGVIQALELRPGMTVLPGATLARINGVT-------------N 243 ++ SG+ + + +++ + ++ G +V G L ++ + Sbjct: 89 KLTHSGRSK---EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQ 145 Query: 244 VWLEAAVPEAQAQGLREGLAVQAELPAYPGHALTGKLTALLADADLQSRTLRLRIELPNL 303 LE + ++ + + +LP P + L + ++ + + + Sbjct: 146 ARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK 205 Query: 304 EGRLR 308 E L Sbjct: 206 ELNLD 210
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 669 bits (1727), Expect = 0.0 Identities = 210/1057 (19%), Positives = 428/1057 (40%), Gaps = 49/1057 (4%) Query: 5 LIRWSVGNRVLVLFATLFLVAWGVLSVRSLPIDALPDLSDVQVIIRTSYPGQAPQIVENQ 64 + + + + + L+ G L++ LP+ P ++ V + +YPG Q V++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTYPLTTTMLSVPGAKTVRGFSA-FGDSFVYVLFEDGTDLYWARSRVLEYLSQVQSRLPA 123 VT + M + + S G + + F+ GTD A+ +V L LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 SAK-PILGPDATGVGWIYQYALVDRRGGHDLAQLRSLQDWFLRFELKTLPDVAEVASIGG 182 + + + + ++ V G + ++ L L V +V G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 183 MVKQYQVVLDPLRLATLGITQAQVTDAIAKANQETGGG------VLEQGEAQFMVRASGY 236 ++ LD L +T V + + N + G L + + A Sbjct: 181 Q-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 237 LKTLDDLRAIPLRLATNGAPVTLGDVATVQLGPEARRGIGELDGQGEAVGGVVILRSGKN 296 K ++ + LR+ ++G+ V L DVA V+LG E I ++G+ A G + L +G N Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGAN 298 Query: 297 AREAIARVKEKLEALKKGLPAGVELVTTYDRSQLIDRAVDNLSQKLLEEFIVVALVCAAF 356 A + +K KL L+ P G++++ YD + + ++ + + L E ++V LV F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 357 LWHLRSSLVAIVSLPVGVLIALIVMRHQGMNANIMSLGGIAIAIGAMVDAAVVMIENAHK 416 L ++R++L+ +++PV +L ++ G + N +++ G+ +AIG +VD A+V++EN + Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 417 HVEAWHARNPGGQLQGEQHWKVMTEAAVEVGPALFFSLMIITLSFVPVFTLQAQEGRLFA 476 + + ++ ++ AL M+++ F+P+ G ++ Sbjct: 419 VMME----------DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYR 468 Query: 477 PLAFTKTYAMAAAAGLAVTLVPVLMGYWIRGPLPAEARNP------LNRGLIRL---YRP 527 + T AMA + +A+ L P L ++ N N Y Sbjct: 469 QFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTN 528 Query: 528 ALEVVLRRPRMTLMGALLILLSSLWPLNHLGGEFLPPLDEGDLLYMPSALPGLSTQKASQ 587 ++ +L L+ LI+ + L FLP D+G L M G + ++ + Sbjct: 529 SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588 Query: 588 LLHRTDQ--LIRTVPEVASVFGKAGRAESATDPAPLEMFETIVRLKPKDQW-RPGMTSEK 644 +L + L V SVF G + S F V LKP ++ ++E Sbjct: 589 VLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAF---VSLKPWEERNGDENSAEA 645 Query: 645 LIEELDRTVQVPGLTNIWIPPIRNRIDMLATGIKSPIGVKVAGSDPG-LIDRVTLAVERA 703 +I + + + +++ + AG L + A Sbjct: 646 VIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMA 705 Query: 704 AKTVPGVTSALAERLTGGRYIDLDIDRQAAARHGLNIADVQAIVAGAIGGETIGETVEGL 763 A+ + S L L++D++ A G++++D+ ++ A+GG + + ++ Sbjct: 706 AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG 765 Query: 764 ARYPISVRYPREWRDSADALRQLPIYTAQGGQITLGTVAQVRITDGPPMLKSENARPSGW 823 + V+ ++R + + +L + +A G + G P L+ N PS Sbjct: 766 RVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPS-- 823 Query: 824 VYIDVRGRDLS-SVVADLRQVVER-EVKLEPGMSLSYSGQFEYLERANARLTWVVPATLA 881 ++++G + D ++E KL G+ ++G + + +V + Sbjct: 824 --MEIQGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFV 881 Query: 882 IIFVLLYLTFGRMEEALLIMGTLPFALTGGVWLLYLMGFNLSVATGVGFIALAGVAAEFG 941 ++F+ L + + +M +P + G + L V VG + G++A+ Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 942 VIMLLYLNNAWAERLAKGEHTQAALLDAIGEGAVHRIRPKAMTVAVIVAGLLPILWSDGT 1001 ++++ + + E +++A R+RP MT + G+LP+ S+G Sbjct: 942 ILIVEFAKDLM-------EKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGA 994 Query: 1002 GSEVMARIAVPMVGGMLTAPLLSLFVIPAAYWMIRRR 1038 GS + + ++GGM++A LL++F +P + +IRR Sbjct: 995 GSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.026 Identities = 16/110 (14%), Positives = 33/110 (30%) Query: 28 FEYPLLARCPEVLQGLSEVVAQRQQSALALRRLEVSLGAREVELEAARASLRAAELREAG 87 Y EVL+ S + Q + E++L + E A + E Sbjct: 173 EPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRV 232 Query: 88 LVERNRELDARRVELAQQAQVLLDQQQLWALLQTTLTEGVWDISVAHGDV 137 R + + + A +L+Q+ + L + ++ Sbjct: 233 EKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI 282
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 28.8 bits (64), Expect = 0.028 Identities = 15/44 (34%), Positives = 22/44 (50%) Query: 114 RSNEALARISDNISRTQDALGRCIALENPSHYLRLEGHDWDEIG 157 R + + R +D+I A+G + NP +Y LEG W IG Sbjct: 770 RMDICVVRNTDDIKACGTAIGNQSMVNNPENYKYLEGKAWKNIG 813
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 85.5 bits (211), Expect = 7e-22 Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 4/188 (2%) Query: 9 ALITGASTGIGSIYAERLARRGYDLVLVARNRERLNALAGRLTSETRQNVEVFPADLANA 68 A ITGA+ GIG A LA +G + V N E+L + L +E R E FPAD+ ++ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA-EAFPADVRDS 69 Query: 69 DDLAKV-ERKLREDASISVLINNAGIGTHTSLLDS-DVERMAEMITLNVTALTRLTYAAV 126 + ++ R RE I +L+N AG+ L+ S E ++N T + + + Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 127 PGFVARGQGAVINISSVVSLAPELLNGVYGGSKAYVTAFTQALNKELAGKGVKVQAVLPG 186 + R G+++ + S + P Y SKA FT+ L ELA ++ V PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 187 ATATDFWQ 194 +T TD Sbjct: 189 STETDMQW 196
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.016 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%) Query: 142 VQAPFSGHVAKVYVKPYQTVSAGTPLFDLVSDGALKVRLNVPSSQ 186 ++ + V ++ VK ++V G L L AL + +Q Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLT---ALGAEADTLKTQ 140
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 59.5 bits (144), Expect = 1e-11 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 10/147 (6%) Query: 178 RPSRRQVLLVALLFGALL---LVPVRQTALAPAQIV-SRQAQIVTSPIDGVINQVQVRPN 233 RP ++ L A + L V A A ++ S +++ + + ++ ++ V+ Sbjct: 56 RPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEG 115 Query: 234 QPVEAGTPLFALDETTLRSRADVLGKEVAVADAELVAASQRAFDNPQSKGELTLL----Q 289 + V G L L + AD L + ++ A L + +L L + Sbjct: 116 ESVRKGDVLLKLTAL--GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173 Query: 290 GRAQQRRAELAAVQAQLKRTQVLAPRA 316 Q E L + Q + Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQN 200 Score = 51.0 bits (122), Expect = 5e-09 Identities = 32/179 (17%), Positives = 67/179 (37%), Gaps = 17/179 (9%) Query: 246 DETTLRSRADVLGKEVAVADAELVAASQRAFDNPQSKGELTLLQGRAQQRRAELAAVQAQ 305 + +S+ + + E+ A E +Q F N +L ELA + + Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQL-FKNEIL-DKLRQTTDNIGLLTLELAKNEER 324 Query: 306 LKRTQVLAPRAGV----AVFSDPNDWLGKPVSTGERIMQVADPAQPAMQIQ--LAVADAI 359 + + + AP + V ++ G V+T E +M + P +++ + D Sbjct: 325 QQASVIRAPVSVKVQQLKVHTE-----GGVVTTAETLMVIV-PEDDTLEVTALVQNKDIG 378 Query: 360 ALEPGAEVTLFLTAYPLS---PLKGKVLETSYQARPADDGVVAYRLLASIDEHAAHARL 415 + G + + A+P + L GKV + A + + ++ SI+E+ Sbjct: 379 FINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGN 437
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.5 bits (87), Expect = 2e-04 Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 9/144 (6%) Query: 409 TRIPGRRKQLFYLGLGLAVLALAIPWHSQVDAVGVAR-----AEHQLRVYTPYPARLQTL 463 T + R + + Y +G V+A + QV+ V A + + + ++ + Sbjct: 51 TPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEI 110 Query: 464 --REQGPVKAGEVLAVLDEPDLDSRLRSSEATARSYQARLSGLLADPAGLSVDAATQQRL 521 +E V+ G+VL L ++ ++++ QARL S++ L Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLL--QARLEQTRYQILSRSIELNKLPEL 168 Query: 522 SVQNEEARAARNEIARLNLQAPFA 545 + +E +E L L + Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIK 192
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.3 bits (73), Expect = 0.004 Identities = 20/96 (20%), Positives = 33/96 (34%) Query: 296 PKPMAVSPEQAAAKIEYQPLPATAVGGKTAAEQRAEDAAKAAQAPAAPAEAPAQAAAQAG 355 K + +A AK + L A +A D+ P A A QAG Sbjct: 429 EKAELQAKLEAEAKALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAG 488 Query: 356 GGDFDKIHNVIQERCTVCHSSKPTSPLFSAAPAGVM 391 + + + + + + +P F+AA VM Sbjct: 489 TKPNQNKAPMKETKRQLPSTGETANPFFTAAALTVM 524
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 37.3 bits (86), Expect = 4e-05 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 14/144 (9%) Query: 42 PSHAGEWLQWHGESLTYLYGKDFKVNPDIQQTITFEHAN--KWKYGDTFMFVDKIFYNGK 99 P + +W WH +S+ + + P I+ E+ K + D + ++D + G Sbjct: 28 PQYLSDW--WH-QSVNVVGSYHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYIDAPVFFGG 84 Query: 100 ADPSKGV----TTYYGEFSPRLSFGKILDRKLAFGPIKDVLLAMTYERGEGDNEA----- 150 +KG+ + + E PR S K+ + L+FGP K+ A Y G N++ Sbjct: 85 NSTAKGIWNKGSPLFMEIEPRFSIDKLTNTDLSFGPFKEWYFANNYIYDMGRNDSQEQST 144 Query: 151 YLIGPGFDLDIPGFNYFTLNFYVR 174 + +G G D+D +LN Y + Sbjct: 145 WYMGLGTDIDTGLPMSLSLNVYAK 168
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 31.5 bits (71), Expect = 0.003 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 17/137 (12%) Query: 6 SLILAGGLLACGTTFGGD---------LLQWQNNSLTYLWGKNFKVNPETQQTFTFEHAD 56 +L+ AG ++A TTF L W + S+ + + + P+ + E+ + Sbjct: 4 TLLAAGAVVALSTTFAAGAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLEY-E 62 Query: 57 AWKYGDNFFFVDKI----FYQGKKDAN---NGPNTYYGEFSPRLSFGKIFDQKLEFGPVK 109 A+ D F F I F+ G A N + + E PR S K+ + L FGP K Sbjct: 63 AFAKKDWFDFYGYIDAPVFFGGNSTAKGIWNKGSPLFMEIEPRFSIDKLTNTDLSFGPFK 122 Query: 110 DVLLAMTYEFGEGDTES 126 + A Y + G +S Sbjct: 123 EWYFANNYIYDMGRNDS 139
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 74.3 bits (182), Expect = 1e-18 Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 22/207 (10%) Query: 5 RERNKELILRAASEEFADKGFAATKTSDIAAKAGLPKPNVYYYFKSKDNLYREVLESIIA 64 + ++ IL A F+ +G ++T +IA AG+ + +Y++FK K +L+ E+ E + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 65 PIMQAS------TPFNADGDPKEVLSAYIRSKIRISRDLPYASKVFASEIMHGAPHLSPN 118 I + P + +E+L + S + R +F G + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAV-VQ 127 Query: 119 QVEQLNEQARHNIEC--IQRWIDRGQI-AHVDAHHLMFSIWAATQTYADFDWQISAVTGK 175 Q ++ ++ ++ I+ + A + + IS + Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGY----------ISGLMEN 177 Query: 176 AKLADSDYDAA--AETIIRMVLKGCEP 200 A +D A + ++L+ Sbjct: 178 WLFAPQSFDLKKEARDYVAILLEMYLL 204
>PF06580#Sensor histidine kinase Length = 349 Score = 26.4 bits (58), Expect = 0.040 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 10/49 (20%) Query: 5 VAVIFLALVWALSLWFFLNYSKR---------QRELAAQQAEGDALRDQ 44 V+ + +W+L L+F ++ K + AQ+A+ AL+ Q Sbjct: 122 FNVVVVTFMWSL-LYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQ 169
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 72.7 bits (178), Expect = 9e-17 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 16/122 (13%) Query: 134 LNSSLLFGSGDAMPSDKAFAIIDKVANILK---PFANPVHVEGFTDNLPIRTAQYPTNWE 190 L S +LF A + A +D++ + L P V V G+TD I + Y N Sbjct: 217 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDAY--NQG 272 Query: 191 LSSARAASIVRLLAMEGVNPARMASVGYGEYQPVASNDTADGRAR---------NRRVVL 241 LS RA S+V L +G+ ++++ G GE PV N + + R +RRV + Sbjct: 273 LSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEI 332 Query: 242 VI 243 + Sbjct: 333 EV 334
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.1 bits (138), Expect = 4e-11 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 2 AVKVLVVDDSGFFRRRVSEILSADPTIQVVGTATNGKEAIDQALALKPDVITMDYEMPMM 61 +LV DD R +++ LS V +N A D++ D MP Sbjct: 3 GATILVADDDAAIRTVLNQALS-RAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGITAVRHIMQRCP-TPVLMFSSLTHEGARVTLDALDAGAVDYLPKNFEDISRNPDKVKQ 120 + + I + P PVL+ S+ + A + GA DYLPK F D++ + + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAI--KASEKGAYDYLPKPF-DLTELIGIIGR 117 Query: 121 LL 122 L Sbjct: 118 AL 119
>PF06580#Sensor histidine kinase Length = 349 Score = 43.3 bits (102), Expect = 2e-06 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 22/122 (18%) Query: 451 ETDLDKNLVEALADPLV--HLVRNAVDHGIEMPDEREASGKARTGRVVLSAEQEGDHILL 508 E ++ +++ P++ LV N + HGI + G+++L ++ + L Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTL 294 Query: 509 SISDDGKGMDPNILRAKAVEKGLMDKDAAERLSESDCYNLIFAPGFSTKTEISDVSGRGV 568 + + G N + GL + ERL +++ G + ++S+ G+ Sbjct: 295 EVENTGSLALKNTKESTGT--GLQNVR--ERL------QMLY--GTEAQIKLSEKQGKVN 342 Query: 569 GM 570 M Sbjct: 343 AM 344
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 5e-24 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 6 KILIVDDFSTMRRIIKNLLRDLGFTNTEEADDGTTALPMLENGHYDFLVTDWNMPGMSGI 65 IL+ DD + +R ++ L G+ + T + G D +VTD MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 DLLRKVRASEKLKSMPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFER 125 DLL +++ + +PVL+++A+ I+A++ G Y+ KPF L I + Sbjct: 64 DLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 319 bits (819), Expect = e-109 Identities = 103/348 (29%), Positives = 188/348 (54%), Gaps = 3/348 (0%) Query: 9 DKTEDPTEKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLSMMRMNFSL 68 +KTE PT K+ RDAR+KG++A+SKE+ + A+ +A + L+ + E +M + Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQ 63 Query: 69 TREVIVDERAMGAFLLASGKMAIWAVQPVLILLFVISFVAPIALSGFLFSGSLLQPKFSR 128 + + +A+ + + P+L + +++ + + GFL SG ++P + Sbjct: 64 SY--LPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKK 121 Query: 129 MNPLSGIKRMFSMNSLTELLKALAKFFVILIVAVVVLSNDRQALLSIANEPLEQAIIHSL 188 +NP+ G KR+FS+ SL E LK++ K ++ I+ +++ + LL + +E Sbjct: 122 INPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLG 181 Query: 189 QVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGKPEVKQRIRQL 248 Q++ + + G ++I+ AD F+ YQ K++KM+K E++ EYK+ EG PE+K + RQ Sbjct: 182 QILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQF 241 Query: 249 QREVSQRRMMAAVPQADVIITNPTHYAVALQYDPEKGGAAPLLLAKGSDFMALKIREIGV 308 +E+ R M V ++ V++ NPTH A+ + Y + PL+ K +D +R+I Sbjct: 242 HQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETP-LPLVTFKYTDAQVQTVRKIAE 300 Query: 309 EHKIQILESPALARAIYYSTEVEQEIPAGLYLAVAQVLAYVFQIRQYR 356 E + IL+ LARA+Y+ V+ IPA A A+VL ++ + + Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEK 348
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 136 bits (344), Expect = 3e-41 Identities = 97/255 (38%), Positives = 152/255 (59%), Gaps = 2/255 (0%) Query: 1 MLELTDTQIGTWVATFILPLFRVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPP 60 ML++T Q +W+ + PL RV A++ T PI R +P RV+L +A+ IT I P+LP Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 LPEFDPLSLRGLLLCAEQIIVGALFGLALQLLFQAFVIAGQIVAVQMGMAFASMVDPANG 120 S L L +QI++G G +Q F A AG+I+ +QMG++FA+ VDPA+ Sbjct: 61 NDVPV-FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 VNVTVISQFMTMLVSVLFLLMNGHLVVFEVLTESFTTLPVGSALVVNHFWELAGRMGW-V 179 +N+ V+++ M ML +LFL NGHL + +L ++F TLP+G + ++ + + G + Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 180 FAAGLLLILPVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMFIFWVGLADVLSH 239 F GL+L LP+I LL +N+A G++ R APQL+IF IGFPLTL +G+ + + + Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 Query: 240 YQALASETLQWLREL 254 + L SE L ++ Sbjct: 240 CEHLFSEIFNLLADI 254
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 53.6 bits (129), Expect = 3e-13 Identities = 21/74 (28%), Positives = 38/74 (51%) Query: 7 VDLFRDALWLTTLMVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLITLIVAG 66 V AL+L ++ + + ++GL+V +FQ TQ+ EQTL F +LL + + L + Sbjct: 5 VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64 Query: 67 PWLVQKFMEYITTL 80 W + + Y + Sbjct: 65 GWYGEVLLSYGRQV 78
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 266 bits (681), Expect = 2e-92 Identities = 135/244 (55%), Positives = 185/244 (75%), Gaps = 1/244 (0%) Query: 5 LRTMLTLALLLAAPLALAADPLSIPAITLSNTADGQQEYSVSLQILLIMTALSFIPAFVI 64 +R +L++A +L + A +P IT G Q +S+ +Q L+ +T+L+FIPA ++ Sbjct: 1 MRRLLSVAPVLLWLITPLAFA-QLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILL 59 Query: 65 LMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVFDRVNQDALQPYLKE 124 +MTSFTRIIIVF +LR ALG P NQ+L G+ALFLT FIM+PV D++ DA QP+ +E Sbjct: 60 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEE 119 Query: 125 QMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLSKRTDIAGPDQVPLTILVPAFVTSEL 184 +++ Q+A++K PL++FML QTR++DL LF RL+ + GP+ VP+ IL+PA+VTSEL Sbjct: 120 KISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSEL 179 Query: 185 KTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTL 244 KTAFQIGF IFIPFLIID+V+ASVLMA+GMMM+ P I+LPFK+MLFVLVDGW L++G+L Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239 Query: 245 ASSF 248 A SF Sbjct: 240 AQSF 243
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 120 bits (303), Expect = 4e-38 Identities = 64/154 (41%), Positives = 96/154 (62%), Gaps = 20/154 (12%) Query: 1 MANENEITSAEDQALADEWAAAL-EETGSAGQADIDALLGGDAGSSGSGRLPMEEFASSP 59 M++ N + AL D WA AL E+ + ++ DA+ G SG + Sbjct: 1 MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQ-------- 52 Query: 60 KPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLV 119 ++D+I+DIPV +++E+G T + I+ LL+L QGSV+ LD LAGEPLD+L+ Sbjct: 53 -----------DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILI 101 Query: 120 NGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKL 153 NG LIA GEVVVV +K+G+R+TD+I+PSER+++L Sbjct: 102 NGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 256 bits (655), Expect = 6e-86 Identities = 95/324 (29%), Positives = 164/324 (50%), Gaps = 9/324 (2%) Query: 5 DLLSQDEIDALLHGVDDGLVQTESASEPGSIKS---YDLTSQDRIVRGRMPTLEMINERF 61 ++LSQDEID LL + G E A + YD D+ + +M TL +++E F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 62 ARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAK 121 AR T S+ LR V V V + + E++ S+ P++L ++ + PL+G ++ +D Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 122 LVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVTFEYMNS 181 + F ++D FGG G+ AK++ R+ T E V+ V+ + +++E+W ++ + Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ-RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQI 181 Query: 182 EVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGF--QSDLDD 239 E NP A IV PSE VV+ T ++ G ++ +PY IEP+ L + F S Sbjct: 182 ETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRS 241 Query: 240 QDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVE---LPEHLVLRANG 296 +++ LR+ + V + + A V +L +RDIL ++ GD+I + + + VL Sbjct: 242 STTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGN 301 Query: 297 VPAFKARLGSHKGNLALQIIDPIE 320 F + G +A QI++ IE Sbjct: 302 RKKFLCQPGVVGKKIAAQILERIE 325
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 49.4 bits (117), Expect = 1e-08 Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 6/208 (2%) Query: 216 STESGDKAFGALVEEGLKDTKSASSDTRVDDFANRL-ASLTQAVTAKTANAVPANASPLH 274 +T D A G + A S V + + A+ + +T +P A+P+ Sbjct: 172 TTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVL 231 Query: 275 QPLPMNQNAWAEGLVNRVMYLSSQNLKSADIQLEPAELGRLDIRVNVAADQATQVTFISG 334 P+ + W + L + + Q +SA+++L P +LG + I + V +QA Q+ +S Sbjct: 232 SA-PLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQA-QIQMVSP 289 Query: 335 HAGVRDALDSQVHRLRELFAQQGLAQPDVNVADQSRGQQQNQGQAQGSNLSGVAARRGEQ 394 H VR AL++ + LR A+ G+ N++ +S QQ Q S A Sbjct: 290 HQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQ--SQRTANHEPL 347 Query: 395 GGVEVADSARPVE-QQVVVGDSAVDYYA 421 G + PV Q V G+S VD +A Sbjct: 348 AGEDDDTLPVPVSLQGRVTGNSGVDIFA 375
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.8 bits (189), Expect = 6e-17 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 3/137 (2%) Query: 5 QALTVLVAEDGAADRLLLAQIVRRQGHQVVTAENGEQAVALFIERRPQLVLLDALMPVMD 64 T+LVA+D AA R +L Q + R G+ V N LV+ D +MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 65 GFEAARQIKALAGEALVPIIFLTSLNEEEGLVRCLEAGGDDFMAKPYSA-VILAAKIRAM 123 F+ +IK + +P++ +++ N ++ E G D++ KP+ ++ RA+ Sbjct: 62 AFDLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 124 DRLRRLQATVLEQRDQI 140 +R + + + Sbjct: 120 AEPKRRPSKLEDDSQDG 136
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 50.6 bits (120), Expect = 7e-11 Identities = 39/134 (29%), Positives = 72/134 (53%) Query: 10 LAPVVDMAEEAERKAAQRLGHFQQQVVTAQAKLAELERFREDYQLQWINRGGQGVNGSWL 69 LA + D+AE+ AA+ LG ++ A+ +L L ++ +Y+ + G+ + Sbjct: 7 LATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAGITSNRW 66 Query: 70 VNYQRFLGQLEAAMTQQRQSLVWHQNNLNNARGIWQQAYARVEGLRKLVQRYMDEARRAE 129 +NYQ+F+ LE A+TQ RQ L ++ A W++ R++ + L +R A AE Sbjct: 67 INYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQSTAALLAE 126 Query: 130 DKREQRLLDELSQR 143 ++ +Q+ +DE +QR Sbjct: 127 NRLDQKKMDEFAQR 140
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 57.1 bits (137), Expect = 7e-12 Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 24/204 (11%) Query: 38 PEPEPEVIEEEVEEVPLEEVQPLTLEELEAIRQEAYNEGFATGEREGFHSTQLKVRQEAE 97 P V E EE +EE +P ++L ++ +A+ +G+ G EG Q +Q + Sbjct: 17 PPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEG---RQQGHKQGYQ 73 Query: 98 EALKAKLES---------------LERLMANLMEPIAEQDTQIEKSLVHLVAHMTRQVIG 142 E L LE +++L++ + D+ I L+ + RQVIG Sbjct: 74 EGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIG 133 Query: 143 RELRNDSSQITQVLREALKLLPMGADNIRIHLNPQDF----DLAKALRERHEESWRLLED 198 + D+S + + +++ L+ P+ + ++ ++P D D+ A H WRL D Sbjct: 134 QTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLH--GWRLRGD 191 Query: 199 SALLPGGCRIETAHSRIDATMETR 222 L PGGC++ +DA++ TR Sbjct: 192 PTLHPGGCKVSADEGDLDASVATR 215
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 303 bits (777), Expect = e-104 Identities = 104/330 (31%), Positives = 205/330 (62%) Query: 10 KLSRVDKAAILLLSLGETDAAQVLRHMGPKEVQRVGVAMAQMGNVHRDQVEQVMSEFVDI 69 L+ KAAILL+S+G +++V +++ +E++ + +A++ + + + V+ EF ++ Sbjct: 14 ALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKEL 73 Query: 70 VGDQTSLGVGSDAYIRKMLNQALGEDKANGLVDRILLGGNTSGLDSLKWMEPRAVADVIR 129 + Q + G Y R++L ++LG KA +++ + + + ++ +P + + I+ Sbjct: 74 MMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQ 133 Query: 130 YEHPQIQAIVVAYLDPDQAGEVLSNFDHKVRLDIVLRVSSLNTVQPAALKELNQILEKQF 189 EHPQ A++++YLDP +A +LS+ +V+ ++ R++ ++ P ++E+ ++LEK+ Sbjct: 134 QEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKL 193 Query: 190 SGNSNAARTTLGGIKRAADIMNFLDSSVEGALMDAIREIDSDLSEQIEDLMFVFNNLADV 249 + S+ T+ GG+ +I+N D E +++++ E D +L+E+I+ MFVF ++ + Sbjct: 194 ASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLL 253 Query: 250 DDRGIQALLREVSSDVLVVSLKGADERVKDKIFKNMSKRASELLRDDLEAKGPVRVSDVE 309 DDR IQ +LRE+ L +LK D V++KIFKNMSKRA+ +L++D+E GP R DVE Sbjct: 254 DDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVE 313 Query: 310 TAQKEILTIARRMAEAGEIVLGGKGAEEMI 339 +Q++I+++ R++ E GEIV+ G E+++ Sbjct: 314 ESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 533 bits (1373), Expect = 0.0 Identities = 206/572 (36%), Positives = 307/572 (53%), Gaps = 35/572 (6%) Query: 28 LENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAAA 87 LE ++++ +I L+V +A+VAI A+VLW++ PDYR L+ +LS D ++ L Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72 Query: 88 DIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEATR 147 +IPY SGA+ V AD + RL+LA G+ P G VGFELLD+E+ G SQF E Sbjct: 73 NIPYRFANGSGAIEVPADKVHELRLRLAQQGL-PKGGAVGFELLDQEK-FGISQFSEQVN 130 Query: 148 YRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQV 207 Y+R+LEGELART+ +L VK+ARVHLA+PK S+FVR+++ PSASV V L PGRAL+ GQ+ Sbjct: 131 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 190 Query: 208 MAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSSLTQAGKQFDYSRRVESMLTQRVH 267 A+V+LV+++V L VT+VDQ G+LL++ S Q ++ VES + +R+ Sbjct: 191 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQS-NTSGRDLNDAQLKFANDVESRIQRRIE 249 Query: 268 NILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPA----LRSEQSVDEQRASSQGPQ 323 IL P++GN A+V+A LDF+ E T E ++P+ A LRS Q ++ + P Sbjct: 250 AILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPG 309 Query: 324 GVPGALSNQPPGAASAPQTTGGAATPASAIQPGQPLVDANGQQIMDPATGQPMLAPYPSD 383 GVPGALSNQP AP T P N Q +T + P Sbjct: 310 GVPGALSNQPAPPNEAPIAT-------------PPTNQQNAQNTPQTSTSTNSNSAGPRS 356 Query: 384 KRQQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKLDPATGDATRAPWAAEDLARF 443 ++ T N+E+DR+I HT+ G + RLSVAVVV+ + D P A+ + + Sbjct: 357 TQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTL-----ADGKPLPLTADQMKQI 411 Query: 444 TRLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQVLGVVFILVL 503 L ++A+GF RGD++ V+N PF+A ++ F+QQ F D + + +LV+ Sbjct: 412 EDLTREAMGFSDKRGDTLNVVNSPFSA-VDNTGGELPFWQQQSFIDQLLAAGRWLLVLVV 470 Query: 504 VF----GVLRPVLNNITGGGKQAASDSDMELGGMMGLDGELANDRVSLGGPTSILLPSPS 559 + +RP L K A + + ++ L+ D + L Sbjct: 471 AWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRL---- 526 Query: 560 EGYEAQLNAIKGLVAEDPGRVAQVVKDWINAD 591 G E I+ + DP VA V++ W++ D Sbjct: 527 -GAEVMSQRIREMSDNDPRVVALVIRQWMSND 557
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 78.5 bits (193), Expect = 1e-22 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 17 MQADAMSLPKVTAAPELAPGQSTFADMLGQAIGKVHETQQASTQLANAFEIGKSGVDLTD 76 +QA AMS + P+ +FA L A+ ++ +TQ A+ A F +G+ GV L D Sbjct: 13 LQATAMSARAQESLPQ---PTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALND 69 Query: 77 VMIASQKASVSMQAMTQVRNKLVQAYQDIMQMPV 110 VM QKASVSMQ QVRNKLV AYQ++M M V Sbjct: 70 VMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 479 bits (1235), Expect = e-169 Identities = 174/472 (36%), Positives = 256/472 (54%), Gaps = 36/472 (7%) Query: 2 AVKVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVRGDAFSLVVSDVNMPGMDG 61 +L+ +DD +R L L G+ + +A + LVV+DV MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 HQLLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEP--------KALLSL 113 LL ++++ +P LPVL+M+A A++A +GA DYL KPF+ +AL Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 114 VQRHAAGRVTGEEGP--VACEPASRQLLELAARVARSDSTVLISGESGTGKEVLARYIHQ 171 +R + ++G V A +++ + AR+ ++D T++I+GESGTGKE++AR +H Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD 182 Query: 172 QSPRATQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLDEISE 231 R PFVAIN AAIP +++E+ LFGHEKGAFTGA G+FEQAEGGTL LDEI + Sbjct: 183 YGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGD 242 Query: 232 MPMALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYYRLSV 291 MPM Q +LLRVLQ+ E VGGR PI D+R++A TN+DL + G FREDLYYRL+V Sbjct: 243 MPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNV 302 Query: 292 FPLAWRPLRERPGDILQLAERLLARHVAKMKHAPVRLSPQARACLQAYAWPGNVRELDNA 351 PL PLR+R DI L + + K R +A ++A+ WPGNVREL+N Sbjct: 303 VPLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKRFDQEALELMKAHPWPGNVRELENL 361 Query: 352 LQRALILQQGGVIEAADFCL-----------------AGAIPLSAGTEPSL--------E 386 ++R L VI +G++ +S E ++ + Sbjct: 362 VRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGD 421 Query: 387 VAAEAGGLGDDMRRHEYQMIIDTLRAERGRRKEAAERLGISPRTLRYKLAQM 438 +G + EY +I+ L A RG + +AA+ LG++ TLR K+ ++ Sbjct: 422 ALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 3e-06 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKNTVGTGV 61 N +SGL AA ALN NNI++ G+ A S T VG GV Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANS-----TLGAGGWVGNGV 57 Query: 62 KTAAV 66 + V Sbjct: 58 YVSGV 62 Score = 37.6 bits (87), Expect = 9e-05 Identities = 15/48 (31%), Positives = 24/48 (50%) Query: 392 QITGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQTIIQM 439 Q++ S V+L E NL + Q Y ANA+ + T + I +I + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.3 bits (81), Expect = 5e-05 Identities = 8/38 (21%), Positives = 21/38 (55%) Query: 108 NVNVVEEMADMISASRAFQTNAELMNTAKSMMQKVLTL 145 VN+ EE ++ + + NA+++ TA ++ ++ + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 33.8 bits (77), Expect = 2e-04 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 25/152 (16%) Query: 4 SSVFNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGGSQS 63 SS+ N A SG++A LNT ++NI++ + R N+ G Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYT-------RQTTIMAQ-ANSTLGA--- 49 Query: 64 LFEDQGEAGQGVQVKGI--VEDQSTLEARYEPNHPAANKDGYVYYPNVNVVEEMADMISA 121 G G GV V G+ D ++ Y ++ ++ M ++ Sbjct: 50 ----GGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTA--RYEQMSKIDNMLSTSTS 103 Query: 122 SRA------FQTNAELMNTAKSMMQKVLTLGQ 147 S A F + L++ A+ + +G+ Sbjct: 104 SLATQMQDFFTSLQTLVSNAEDPAARQALIGK 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 307 bits (789), Expect = e-101 Identities = 114/371 (30%), Positives = 181/371 (48%), Gaps = 33/371 (8%) Query: 176 LAGAVLTLHRADRIGERIYNVRKQELRGFDSIFQSSRVMAAVVREARRMAPLDAPLLIEG 235 L + + RA +R + + + + + S M + R R+ D L+I G Sbjct: 108 LTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITG 167 Query: 236 ETGTGKELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGL 295 E+GTGKEL+ARA H R P +A+N A +P + E+ELFG+ GAF GA+ G Sbjct: 168 ESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRST-GR 226 Query: 296 LELTAGGTLFLDGVGEMSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSEL 355 E GGTLFLD +G+M Q +LLR LQ G + VG + DVR++ AT DL + Sbjct: 227 FEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQS 286 Query: 356 CARGEFRQDLYHRLNVLSLHIPPLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMEK 415 +G FR+DLY+RLNV+ L +PPLR+ + + LV+HF+ QA ++ G + R A+E Sbjct: 287 INQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALEL 345 Query: 416 LGQYHWPGNVRQLENVLFQAVSLCEGGVVKSEHIRLP----------------------- 452 + + WPGNVR+LEN++ + +L V+ E I Sbjct: 346 MKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSIS 405 Query: 453 ---DYGARQPLGEF----SLEGDLSQIVGRFEKAVLESLMGEFSSSRAL-GKRLGVSHTT 504 + RQ F G +++ E ++ + + ++ LG++ T Sbjct: 406 QAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNT 465 Query: 505 IANKLRDYALN 515 + K+R+ ++ Sbjct: 466 LRKKIRELGVS 476
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.1 bits (86), Expect = 1e-04 Identities = 74/369 (20%), Positives = 129/369 (34%), Gaps = 40/369 (10%) Query: 13 QVVSIVLFTFIGYLNIGIPLAVLPGYVHNDLGFSAVVA---GLVISVQYLATLLSRPTAS 69 ++ I+ + + IG+ + VLPG + DL S V G+++++ L P Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLL-RDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 70 RIIDNHGSKKAVMYGLAGCGLSGVFMLACAFLTHLPWLSLACLLVGRLVLGSAESLVGSG 129 + D G + ++ LAG + M FL W+ L +GR+V G +G Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL----WV----LYIGRIVAGI------TG 110 Query: 130 AIGWGIGRVGAANT-----AKVISWNGIASYGALAIGAPLGVLMVK---GLGLWSMGVSI 181 A G G A T A+ + + G LG LM ++ Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALN 170 Query: 182 ILLCIIGLLLAWPKQAA-------PIVSGVRLPFLRVLGKVFPHGSGLALGSIGFGTI-A 233 L + G L ++ + V + G + A Sbjct: 171 GLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPA 230 Query: 234 TFITLYYASR-GWS--DAALTLSLFGASFISAR-LLFGNLINRIGGFRVAIACLSVETLG 289 ++ R W ++L+ FG A+ ++ G + R+G R + + + G Sbjct: 231 ALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTG 290 Query: 290 LLMLWLAPSAEMALAGAALSGFGFSLVFPALGVEAVNQVSAANRGAAVGAYSLFIDLSLG 349 ++L A MA L G + PAL QV +G G+ + L+ Sbjct: 291 YILLAFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLT-S 348 Query: 350 VTGPLVGAV 358 + GPL+ Sbjct: 349 IVGPLLFTA 357 Score = 30.6 bits (69), Expect = 0.010 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 2/146 (1%) Query: 246 SDAALTLSLFGASFISARLLFGNLINRIGGFRVAIACLSVETLGLLMLWLAPSAEMALAG 305 + + L+L+ + + G L +R G V + L+ + ++ AP + G Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 306 AALSGFGFSLVFPALGVEAVNQVSAANRGAAVGAYSLFIDLSLGVTGPLVGAVAAGFGFA 365 ++G G + R G S + V GP++G + GF Sbjct: 103 RIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGM-VAGPVLGGLMGGFSPH 160 Query: 366 SMFLFAATAAACGLVLSLYLYRQARR 391 + F AA + +L ++ + Sbjct: 161 APFFAAAALNGLNFLTGCFLLPESHK 186
>cloacin#Cloacin signature. Length = 551 Score = 30.8 bits (69), Expect = 0.028 Identities = 15/49 (30%), Positives = 28/49 (57%) Query: 269 VVEAKLNVLPIPKYAVLVNVRYTSFMDALRDANALMAHKPLSIETVDSK 317 + E+ ++ LP+ K V VNVR + R ++++ P+S+ VD+K Sbjct: 164 ITESPVSSLPLDKATVNVNVRVVDDVKDERQNISVVSGVPMSVPVVDAK 212
>INTIMIN#Intimin signature. Length = 939 Score = 29.3 bits (65), Expect = 0.024 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 6/66 (9%) Query: 134 IEAINFDTSEIDAAIGVASHDLPGLICHRLHAEELVVILPPEAGAASQNWSPTRISEEVL 193 ++ I +D S + + G H A++ ILP S + T + + Sbjct: 482 LDRIVWDDSALRSQGGQIQHSGS------QSAQDYQAILPAYVQGGSNVYKVTARAYDRN 535 Query: 194 LNVANN 199 N +NN Sbjct: 536 GNSSNN 541
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 26.9 bits (59), Expect = 0.013 Identities = 11/44 (25%), Positives = 15/44 (34%) Query: 54 AGFSGSLIVAEFESLAAAQAWADADPYIAAGVYDKVVVKPFKQV 97 G GS+ E + A W +P A V V +V Sbjct: 279 IGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAVFNVAAAAKV 322
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 101 bits (253), Expect = 4e-27 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 3/135 (2%) Query: 4 LLLIDDDQELCELLGSWLTQEGFTVRACHDGQSARRALAEHAPAAVVLDVMLPDGSGLEL 63 +L+ DDD + +L L++ G+ VR + + R +A VV DV++PD + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 LKQLRSEHAELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVL---RRS 120 L +++ +LPVL++SA+ + I E GA DYL KP D EL + L +R Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 121 HPTATTSQVELGDLV 135 + LV Sbjct: 126 PSKLEDDSQDGMPLV 140
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 28.0 bits (62), Expect = 0.011 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%) Query: 1 MRKTLIALMFAAALPTVAMA 20 M+K+LIAL AALP AMA Sbjct: 1 MKKSLIALTL-AALPVAAMA 19
>PF06580#Sensor histidine kinase Length = 349 Score = 35.2 bits (81), Expect = 5e-04 Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 24/115 (20%) Query: 327 PGLTLQGWPTLIERAVDNLLRNALRFNPVGQPVEVSAVREQDRIVISVRDHGPGAAAEHL 386 P + +Q TL+E + ++ + P G + + ++ + + V + G A Sbjct: 256 PPMLVQ---TLVENGI----KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLAL---- 304 Query: 387 AQLGEPFFRAPGQDAPGHGLGLA-IARKAAERHGGSLVLDNHPQEG-FVARLELP 439 G GL + + +G + ++G A + +P Sbjct: 305 -----------KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.0 bits (67), Expect = 0.037 Identities = 49/263 (18%), Positives = 98/263 (37%), Gaps = 23/263 (8%) Query: 417 LQEARGTADQSAAIASQTSNGMQQQHREIEQV---------ATAANEMSATALDVAHNAS 467 L +A A + A A + +Q+ +EIE+ A E AL A Sbjct: 132 LAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAV 191 Query: 468 QAAQAARAADQASQEGLQLIDSTRQGIDRLAAGMNTAMDEARALEGRSGQIGSVLEVIRT 527 + AQ +A Q+ E +++ + RL++ ++ E + L G+ ++ + Sbjct: 192 EIAQKKLSAAQS--EVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKE 249 Query: 528 IAEQTNLLAL--NAAIEAARAGEAGRGFAVVADEVRGLAQRTQVSVEEIRQVIEGLQQGT 585 + E L+ N ++ EA R ++ S I ++ + Q Sbjct: 250 LDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQIQ 309 Query: 586 QDVVGAMHE------GQRQAQDSAARMEQALPALQRIGEAVAVISDMNLQIASA-AEEQS 638 + + + +A+++ + + L Q I +AV + E+ S Sbjct: 310 KAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQ-IKDAVDATVSFYQTLTEKYGEKYS 368 Query: 639 AVAEEVNRNVAG--IRDVTESLA 659 +A+E+ G I +V E+LA Sbjct: 369 KMAQELADKSKGKKIGNVNEALA 391
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 287 bits (737), Expect = 3e-98 Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 12/219 (5%) Query: 209 ALVGHDGNALAIPV--------VEVPAGQTTDTVTLFLSGDGGWRDLDRDVAGEMAKLGY 260 A + L + + V + T + +FLSGDGGW LD+ V G + + G+ Sbjct: 20 AFADEFADNLGLTLLPVEPSTQVNAASSHTKPPLVIFLSGDGGWATLDKAVGGILQQQGW 79 Query: 261 PVVGIDTLRYYWQHKTPEQSAADLSELMQHYRQKWGTKRFVLTGYSFGADVLPAIYNRLP 320 PVVG +L+YYW+ K P+ D ++ Y+ ++GT++ +L GYSFGA+V+P + N +P Sbjct: 80 PVVGWSSLKYYWKQKDPKDVTQDTLAIIDKYQAEFGTQKVILIGYSFGAEVIPFVLNEMP 139 Query: 321 PEDQQRIDAVMLLAFARSGSFEIEVEGWLGKEGQEAP--TGPEMAKLPASKVVCVYGVEE 378 ++ + +LL+ ++S FEI V + + Q A T PE+ K ++C+YG E+ Sbjct: 140 ARYRKNVLGAVLLSPSQSSDFEIHVSEMVTSDNQSARYLTLPEVNKQTTVPMLCLYGKED 199 Query: 379 TD-ESGCTE-KTAVGERLKLPGGHHFDENYPALAKRLIG 415 C E K ++L GGH FD++Y + K + G Sbjct: 200 DAPLHLCPEVKQPNVTVMELSGGHSFDDDYDKVVKLIKG 238
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 38.1 bits (88), Expect = 1e-04 Identities = 70/319 (21%), Positives = 104/319 (32%), Gaps = 27/319 (8%) Query: 27 VVAAPVCVSRDEVGMAGAAGMQFPGGVGGTGARAGGVGGTGAPLQQRPGGTGGTGAVAEG 86 V A P + V + GA+ + GG TG RA GV + A Sbjct: 208 VTAVPASGAPAAVSVLGASELTLDGG-HITGGRAAGV------AAMQGAVVHLQRATIRR 260 Query: 87 VDGTYFDHSHGGVGGTGAPIKRPGGTGGTGIVGTITGFASICVNGMEVHYGKDVPVSENG 146 D GG GA PGG G G + G+ + V+G V ++ S Sbjct: 261 GDAPAGGAVPGGAVPGGAV---PGGFGPGGFGPVLDGWYGVDVSGSSV----ELAQSIVE 313 Query: 147 APASSGHLAIGQVVAVEAFATQRGLQAGRISILNVFEGPLTALPNASAPLRVMGQP-VRL 205 AP + +G+ V G + G P A APL + Q Sbjct: 314 APELGAAIRVGRGARVTVSGGSLSAPHGNVI---ETGGARRFAPQA-APLSITLQAGAHA 369 Query: 206 AAGARVAEGLRPGEPVRVSGLRDARGEVVATRIERAPGLREASAIGAVDRAGNLQGLKLG 265 A + L + ++G DA+G++VAT + PG A+ G Sbjct: 370 QGKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGA--- 426 Query: 266 TRVAPAREVLVRGQWT---GRQLEVAQTRPDPSLPFAGRVQQAVVEGLVQRTQARQ-LVV 321 TR + + W + + D S+ F + + L T A L Sbjct: 427 TRAVDSLS-IDNATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFR 485 Query: 322 AGINVTLGQGTVIVGRQPA 340 + LG +V Q A Sbjct: 486 MNVFADLGLSDKLVVMQDA 504
>cloacin#Cloacin signature. Length = 551 Score = 47.8 bits (113), Expect = 8e-09 Identities = 30/87 (34%), Positives = 39/87 (44%) Query: 43 GGGGGGHGGGGGHGGGGGSGGGGGHGGGGGSGGGGHGGGGGSGSGGGHGSGGDGGGHAGN 102 GG G GH G G +GG G G GGG+ G + GGG GSG GG +G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 103 GNSGSGHDGQGHDGNSNSGRSSSHAEA 129 GN G + G G + + + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 44.7 bits (105), Expect = 1e-07 Identities = 31/79 (39%), Positives = 37/79 (46%) Query: 29 DSITHGSSAYAKDGGGGGGGHGGGGGHGGGGGSGGGGGHGGGGGSGGGGHGGGGGSGSGG 88 D H + A++ G GG G G G G GSG + GG G G GGGSG G Sbjct: 5 DGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 89 GHGSGGDGGGHAGNGNSGS 107 G G+G GGG GN + Sbjct: 65 GGGNGNSGGGSGTGGNLSA 83 Score = 42.0 bits (98), Expect = 9e-07 Identities = 29/65 (44%), Positives = 32/65 (49%), Gaps = 5/65 (7%) Query: 41 DGGGGGGGHGGGGGHGGGGGS-----GGGGGHGGGGGSGGGGHGGGGGSGSGGGHGSGGD 95 +GG G G GGG G G S GGG G G G G G GGG SGGG G+GG+ Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Query: 96 GGGHA 100 A Sbjct: 81 LSAVA 85 Score = 32.4 bits (73), Expect = 0.001 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 2/78 (2%) Query: 88 GGHGSGGDGGGH--AGNGNSGSGHDGQGHDGNSNSGRSSSHAEAGDDHGNHVGGEPGDDH 145 GG G G + G H +GN N G G G + SG SS + G G+ + G H Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 146 GNHVGGEPGDDHGNHVGG 163 GN G G Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 27.8 bits (61), Expect = 0.033 Identities = 21/85 (24%), Positives = 25/85 (29%), Gaps = 3/85 (3%) Query: 72 GSGGGGHGGGGGSGSG---GGHGSGGDGGGHAGNGNSGSGHDGQGHDGNSNSGRSSSHAE 128 G G GH G S SG GG G GGG + S ++ G S Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 129 AGDDHGNHVGGEPGDDHGNHVGGEP 153 + GG G P Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAP 87
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.1 bits (83), Expect = 2e-05 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 75 VDMLFVAPTHRGQGVGKRLLRYAI-----NELNAEYLDVNEQNPQALGFYLHEGFEVIG 128 ++ + VA +R +GVG LL AI N L+ + N A FY F + Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 0.032 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 20/72 (27%) Query: 355 LLENAYR------LSLGQVRVSLEQTPGQLTLCIEDDGPGVPADQRERILERGERLDSQH 408 L+EN + G++ + + G +TL +E+ G L + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA--------------LKNTK 308 Query: 409 PGQGIGLAVVKD 420 G GL V++ Sbjct: 309 ESTGTGLQNVRE 320
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 2e-21 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 18 KLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIVDLGLPGISGLE 77 +LV +D+A +R L L +G+ V ++A DL + D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 78 LITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEE-LEARLNALLRRSS 136 L+ R++ P+L+++A+ + ++ GA DYL KPF E + AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124
>SECA#SecA protein signature. Length = 901 Score = 27.9 bits (62), Expect = 0.036 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 18/60 (30%) Query: 133 ASRDTDY-GYAY---GLQAGVIQ--------------DITDKASVELGYRYLRTNAATEV 174 A RD + + GL G+ DIT + E G+ YLR N A Sbjct: 136 AQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSP 195
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 95.9 bits (238), Expect = 3e-26 Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 14/224 (6%) Query: 11 LQHHWPLPRPLPGAVLVSCTFDPARLAPDDFQRAGIVPSASLQRSVAKRQAEYLAGRVCA 70 L H+PLP G L FD + D + L+ + KR+AE+LAGR+ A Sbjct: 2 LTSHFPLP--FAGHRLHIVDFDASSFREHDLLW--LPHHDRLRSAGRKRKAEHLAGRIAA 57 Query: 71 RAALQRLDGRDYVPATHEDRSPIWPAGIHGSITHGQGWAAAVVAAEGSCQGLGLDQEALL 130 AL+ + G VP + R P+WP G+ GSI+H A AV+ S Q +G+D E ++ Sbjct: 58 VHALREV-GVRTVPGMGDKRQPLWPDGLFGSISHCATTALAVI----SRQRIGIDIEKIM 112 Query: 131 DDERAERLMGEILTSAELERLDSHQLG--LTVTLTFSLKESLFKTLYPLTHQRFYFEHAE 188 A L I+ S E + L + L L +TL FS KES++K + F A+ Sbjct: 113 SQHTATELAPSIIDSDERQILQASLLPFPLALTLAFSAKESVYKA-FSDRVTLPGFNSAK 171 Query: 189 VLDWSAEGLARLRLLTDLSPQWRHGAELQGQFCLQDGHLLSLVS 232 V +A L LL + ++ ++ +D +++LVS Sbjct: 172 VTSLTA-THISLHLLPAFAATMAE-RTVRTEWFQRDNSVITLVS 213
>PF06580#Sensor histidine kinase Length = 349 Score = 34.1 bits (78), Expect = 0.001 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 25/107 (23%) Query: 430 LQNLVGNAMRHA------ESEVRLSYQLGQQRCRIDVEDDGPGIPEGVWDRIFTPFTRLD 483 +Q LV N ++H ++ L ++VE+ G + + Sbjct: 260 VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE---------- 309 Query: 484 DSRTRASGGHGLGLSIVR-RIIYWHAGRASVGRSAALGGACFSLNWP 529 G GL VR R+ + A + S G + P Sbjct: 310 --------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.6 bits (191), Expect = 1e-18 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 1/136 (0%) Query: 6 PRILIVEDDQRLADLTAEYLQANGYEVSVEGDGARAARRIVDSQPDLVILDLMLPGEDGL 65 IL+ +DD + + + L GY+V + + A R I DLV+ D+++P E+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 SICRRVRSQYLG-PILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARIQALLRRSE 124 + R++ P+L+++A++ + ++ + GA DY+ KP L+ I L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 125 TVDSKRQDLAFGALHI 140 SK +D + + + Sbjct: 124 RRPSKLEDDSQDGMPL 139
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 70.6 bits (173), Expect = 3e-16 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 23/179 (12%) Query: 8 RLLLTGAAGGLGKVLRERL-QGYAEVLRLSDISP----------MAPAAGPHEEVITCDL 56 + L+TGAAG +G + +RL + +V+ + +++ + A P + DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 57 ADKAAVHALVE--GVDAIIHFG---GV--STE--HSFEDILGPNICGVFHVYEAARKHGV 107 AD+ + L + + V S E H++ D N+ G ++ E R + + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADS---NLTGFLNILEGCRHNKI 118 Query: 108 KRIIFASSNHTIGFYRQDERIDAHSPRRPDSYYGLSKCYGEDVASFYFDRYGIETVSIR 166 + +++ASS+ G R+ S P S Y +K E +A Y YG+ +R Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 26.1 bits (57), Expect = 0.018 Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 43 FGLHLLEVLFFNGSLRGRSHRWFDRLQILLTGIFHVMSIPRAQEAP 88 LHLL + R WF R ++T + + +P + AP Sbjct: 180 ISLHLLPAFAATMAERTVRTEWFQRDNSVITLVSAITRVPHDRSAP 225
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 124 bits (313), Expect = 3e-36 Identities = 55/140 (39%), Positives = 77/140 (55%), Gaps = 13/140 (9%) Query: 113 PAAPPATVAEPSPEVII--LDDNGAVMFAFDSADLTPAAQQRLQGLVAKLDS--PTVAKV 168 A A P+PEV V+F F+ A L P Q L L ++L + P V Sbjct: 196 AAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSV 255 Query: 169 RVIGHTDNVGSDSYNQALSERRASSVAEYLIGQGLEAGKVTSQGRGESEPVTDNETEEGR 228 V+G+TD +GSD+YNQ LSERRA SV +YLI +G+ A K++++G GES PVT N + + Sbjct: 256 VVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVK 315 Query: 229 AR---------NRRVELHLN 239 R +RRVE+ + Sbjct: 316 QRAALIDCLAPDRRVEIEVK 335
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 117 bits (295), Expect = 1e-33 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 11/139 (7%) Query: 101 PPEPAAVVEEVVVQKEEVIVIRDVHFEFDSARLTSSDKERLNTIATRLKQ-EAPSARLSV 159 P A VQ + + DV F F+ A L + L+ + ++L + + V Sbjct: 198 PVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVV 257 Query: 160 SGHTDSVGSDSYNQKLSERRAHSVTDYLVESGVPRRSFVSVVGAGETQPVADNATAEGR- 218 G+TD +GSD+YNQ LSERRA SV DYL+ G+P +S G GE+ PV N + Sbjct: 258 LGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIP-ADKISARGMGESNPVTGNTCDNVKQ 316 Query: 219 --------AMNRRTEIKIQ 229 A +RR EI+++ Sbjct: 317 RAALIDCLAPDRRVEIEVK 335
>SECA#SecA protein signature. Length = 901 Score = 48.7 bits (116), Expect = 2e-09 Identities = 14/22 (63%), Positives = 17/22 (77%) Query: 133 KAGRNDPCPCASGQKFKKCCAS 154 K GRNDPCPC SG+K+K+C Sbjct: 878 KVGRNDPCPCGSGKKYKQCHGR 899 Score = 28.7 bits (64), Expect = 0.010 Identities = 8/14 (57%), Positives = 8/14 (57%) Query: 6 CPCGSGNLLDACCG 19 CPCGSG C G Sbjct: 885 CPCGSGKKYKQCHG 898
>PERTACTIN#Pertactin signature. Length = 922 Score = 28.5 bits (63), Expect = 0.014 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%) Query: 53 HLRVDNPNDSRLFIRNLSYAVRLNDLLLVQDETS----VW-RSVGGHA 95 L VD S LF N+ + L+D L+V + S +W R+ G Sbjct: 468 VLMVDTLAGSGLFRMNVFADLGLSDKLVVMRDASGQHRLWVRNSGSEP 515
>SECA#SecA protein signature. Length = 901 Score = 56.8 bits (137), Expect = 1e-13 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 23 GHVHGPHCNHGHQEPVRNALKDVGRNDPCPCGSEKKFKKCHG 64 H + + VGRNDPCPCGS KK+K+CHG Sbjct: 858 SHQDDDS-AAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHG 898
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 32.9 bits (75), Expect = 0.002 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 3/101 (2%) Query: 53 LCLMLATYPVSRLMGRIGRKKAFMLGAIPLALSGVSGFLAVEHQHFPTLVLSHSALGV-Y 111 L + T +L ++G K+ + G I V GF V H F L+++ G Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGF--VGHSFFSLLIMARFIQGAGA 117 Query: 112 IAFANFNRFAATDNLSQALKPKALSLVVAGGVIAAVVGPTL 152 AF + + + KA L+ + + VGP + Sbjct: 118 AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 37.5 bits (87), Expect = 2e-05 Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 29/122 (23%) Query: 3 KIAIIGATGRAGSQLLEEALRRGHSVLAI-----ARDPSR------LQGRDGVTVKALDA 51 K + GA G G + + L GH V+ I D S L + G +D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 52 KDSAALQA--AVEGVDAVLSAAH-----FSTIEPHA-----------IIEPVKRAGVKRL 93 D + A + V + H +S PHA I+E + ++ L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 94 LV 95 L Sbjct: 122 LY 123
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 143 bits (361), Expect = 8e-40 Identities = 95/426 (22%), Positives = 181/426 (42%), Gaps = 27/426 (6%) Query: 1 MTAALPPTTLRN--VLTALMLAIFLGALDQTIVAVSLPAISAQFNDVG-LLAWVISGYMV 57 M + + LR+ +L L + F L++ ++ VSLP I+ FN WV + +M+ Sbjct: 1 MNTSYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFML 60 Query: 58 AMTVAVPIYGKLGDLYGRRRMILTGISLFTLASIACAMAQDMQQ-LVLARVLQGIGAGGM 116 ++ +YGKL D G +R++L GI + S+ + L++AR +QG GA Sbjct: 61 TFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAF 120 Query: 117 VSVSQAIIGDFVPPRERGRYQGYFSSMYAVASVAGPVLGGWLTEYLSWRWVFWINLPLGL 176 ++ ++ ++P RG+ G S+ A+ GP +GG + Y+ W ++ I + + Sbjct: 121 PALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITII 180 Query: 177 VALWAIRRALASMPVQRREAQVDYLGAVLLILGLGSLLLGITLVGQGHAWADPAVLALFA 236 + ++ R + D G +L+ +G+ +L T L + Sbjct: 181 TVPFLMK---LLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISF-------LIVS- 229 Query: 237 CALLGLALFIAHERRCPEPLLPLGLFGNR---VAVLCWGVIFFASFQSISLTMLMPLRYQ 293 +L +F+ H R+ +P + GL N + VLC G+IF +S+ M Sbjct: 230 --VLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVH 287 Query: 294 GITGAGADSAALHLLPLAMGLPMGAFTGGRMTSRTGRYKPQILAGALLMPVAIFAMALTP 353 ++ A S + P M + + + GG + R G + G + V+ + Sbjct: 288 QLSTAEIGSVI--IFPGTMSVIIFGYIGGILVDRRGPLY-VLNIGVTFLSVSFLTASFLL 344 Query: 354 PQSTLLSALFMLLTGIACGLQFPTSLVGT--QSAVASKDIGVATSTTNLFRSLGGAMGVA 411 ++ + ++ GL F +++ T S++ ++ G S N L G+A Sbjct: 345 ETTSWFMTIIIVFV--LGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIA 402 Query: 412 CMSSLL 417 + LL Sbjct: 403 IVGGLL 408
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 140 bits (355), Expect = 4e-44 Identities = 78/209 (37%), Positives = 120/209 (57%) Query: 1 MVRRTKEEAQETRAQIIEAAEKAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQ 60 M R+TK+EAQETR I++ A + F ++GV+ T+L +IA+ AGVTRGAIYWHF +K++L Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 ALLDSLHETHDHLARASESEDELDPLGCMRKLLLQVFNELVLDARTRRINEILHHKCEFT 120 + + L +++ DPL +R++L+ V V + R R + EI+ HKCEF Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 121 DDMCEIRQQRQGAVLDCHKGITLALANAVRRGQLPGELDVERAAVAMFAYVDGLIGRWLL 180 +M ++Q ++ L+ + I L + + LP +L RAA+ M Y+ GL+ WL Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 181 LPDSVDLLGDVEKWVDTGLDMLRLSPALR 209 P S DL + +V L+M L P LR Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLR 209
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.5 bits (100), Expect = 2e-06 Identities = 36/226 (15%), Positives = 80/226 (35%), Gaps = 23/226 (10%) Query: 73 ILKRLFKEGS----DVKEGQQLY---QIDPAVYEATLANAQANLQATRSLAERYKQLIDE 125 L + + V E + Y + VY++ L ++ + + + + QL Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 126 QAVSKQEYDDANAKRLQAEASLKSAQIDLRYTKVLAPISGRI-GRSSFTEGALVSNGQTN 184 + + K L + + + + AP+S ++ TEG +V+ +T Sbjct: 299 EILDK--LRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET- 355 Query: 185 AMATIQQLDPIYVDVTQSTAELLKLRRDL------ESGQLQKAGDNAASVQLVLEDGSLF 238 M + + D + V ++ + E+ + G V+ + D Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIED 415 Query: 239 KQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAG 284 ++ G + ++++E S + + L GM V A +K G Sbjct: 416 QRLGLVFNVIISIEENCLSTGNKNIP------LSSGMAVTAEIKTG 455 Score = 42.5 bits (100), Expect = 2e-06 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 2/96 (2%) Query: 61 RVAEVRPQVNGIILKRLFKEGSDVKEGQQLYQIDPAVYEATLANAQANLQATRSLAERYK 120 R E++P N I+ + + KEG V++G L ++ EA Q++L R RY+ Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 121 QLIDEQAVSKQEYDDANAKR--LQAEASLKSAQIDL 154 L ++K + L Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1318 bits (3413), Expect = 0.0 Identities = 667/1033 (64%), Positives = 829/1033 (80%), Gaps = 4/1033 (0%) Query: 1 MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60 M+ FFI RPIFAWV+A+++M+ GAL+IL+LP+ QYP+IAPPA++++ YPGA AQTVQDT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120 V QVIEQ +NGIDNL Y+SS S+S GS+TIT TF+ GT+PD AQVQVQNKL LATPLLPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180 EVQQQGI V K+ ++L+V G VS++ T+DD+++Y+ SN++D +SR GVGD Q+FGA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPAMPGTQLNATIIGKTRL 240 QYAMRIWLD LNK++LTPVDV + QN Q+++GQLGG PA+PG QLNA+II +TR Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTAEQFEKILLKVNNDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL 300 + E+F K+ L+VN+DGS VRL DVA+V LGGENY V A+ NGKPA+GL +KLATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 DTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQ 360 DTAKA++ + L+PFFP G+K ++PYDTTP V SI V+ TL EA++LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 N RAT+I T+ VPVVLLGTF ILAA G+SINTLTMF MVLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGL 480 E+ LPPKEAT++SM QIQGALVGIA+VLSAV +PMAFFGGSTG IYRQFSITIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGTILRNKVP 540 SVLVALI TPALCAT+LKP+ EHH KGGFFGWFN FD SVN Y SVG IL + Sbjct: 481 SVLVALILTPALCATLLKPVSA-EHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 541 FLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLK 600 +LL YALIV GM+ LF R+P++FLPEEDQGV +Q PAG++ ERTQ V+DQ+ +Y LK Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 601 DEADTVASVFTVNGFNFAGRGQSSGMAFIMLKPWDERS-KENSVFALAQRAQQHFFTFRD 659 +E V SVFTVNGF+F+G+ Q++GMAF+ LKPW+ER+ ENS A+ RA+ RD Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 660 AMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQSKI-LSAVRPNG 718 V F PA++ELG ATGFD L D+ G+GH+ L +ARNQ L AAQ L +VRPNG Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 719 LNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPNAR 778 L D Q++L +D E+A ALGV+++DIN T+S ALG +YVNDFIDRGRVKK+Y+Q + R Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 779 MSPEDLQKWYVRNGKGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEA 838 M PED+ K YVR+ GEMVPFS+F W YGSP+L RYNG+ +MEI G APG S+G+A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 839 MAEVERIAGELPSGVGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPIA 898 MA +E +A +LP+G+G+ WTGMSY+E+LSG+Q PAL A+S + VFLCLAALYESWSIP++ Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 899 VVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHE-QGRSL 957 V+LVVPLGI+G L+A +L NDVYF+VGLLTTIGL+AKNAILIVEFAK+L E +G+ + Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 958 YDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLAIF 1017 +A + A RMRLRPI+MTSLAFILGV+PL I++GAG+G+Q+A+G GV+GGM+SAT+LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1018 WVPLFFVAVSSLF 1030 +VP+FFV + F Sbjct: 1020 FVPVFFVVIRRCF 1032
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 75.2 bits (184), Expect = 2e-19 Identities = 30/90 (33%), Positives = 46/90 (51%) Query: 5 LPEFIIQKLAGRTFHSFDHFSQSFWLAIAEDPIYSQQFIPAQLNRLKKGWPPRAPFHETA 64 +P I KL G+TF ++ F + FW+A+A DP S+QF P L ++ G P E A Sbjct: 516 IPSQIADKLRGKTFKNWRDFREQFWIAVANDPELSKQFNPGSLAVMRDGGAPYVRESEQA 575 Query: 65 KGLRSYQLCHLNPPEWGGLMYDAENLRIMS 94 G ++ H GG +Y+ NL ++ Sbjct: 576 GGRIKIEIHHKVRVADGGGVYNMGNLVAVT 605
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 71.8 bits (176), Expect = 4e-15 Identities = 51/151 (33%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 33 VDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKVGTTGEEVDLALLV-DGLQAEREQGIT 91 VD GK+TL LL++S I ++G VD D ER++GIT Sbjct: 12 VDAGKTTLTESLLYNSGAI------------TELG----SVDKGTTRTDNTLLERQRGIT 55 Query: 92 IDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYI 151 I F K I DTPGH + + S D AI+L+ A+ GVQ QTR + Sbjct: 56 IQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA 115 Query: 152 ASLLGIKHIVVAVNKMDLKGFD-QDVFESIK 181 +GI I +NK+D G D V++ IK Sbjct: 116 LRKMGIPTIFF-INKIDQNGIDLSTVYQDIK 145
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 65.4 bits (159), Expect = 5e-14 Identities = 36/194 (18%), Positives = 64/194 (32%), Gaps = 38/194 (19%) Query: 103 ESSLGSAVIMSPEGYLLTNNHVTSGADQIVVALK------------DGRETLARVIGSDP 150 + + S V++ LLTN HV ALK +G T ++ Sbjct: 100 GTFIASGVVVGK-DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSG 158 Query: 151 ETDLAVLKIDL--------KNLPAITIGRSDNIHIGDVSLAIGNPFGVGQTVTMGIISAT 202 E DLA++K + + T+ + + G P TM + Sbjct: 159 EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD-KPVATMW--ESK 215 Query: 203 GRNQLGLNNYEDFIQTDAAINPGNSGGALVDANGNLVGINTAIFSKSGGSQGIGFAIP-- 260 G+ L +Q D + GNSG + + ++GI+ G+ Sbjct: 216 GK-ITYLKGE--AMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFNGA 263 Query: 261 VKLALEVMKSIVEH 274 V + V + ++ Sbjct: 264 VFINENVRNFLKQN 277
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 28.8 bits (64), Expect = 0.031 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 18/62 (29%) Query: 9 DMPPPVKTVGVLAWMRANLFSSWL------------------NTLLTLFALYLVWLIVPP 50 D P P+ + + W N+ SS L L++L+A + + L+VPP Sbjct: 47 DEPAPLNAMTLAQWSSPNVLSSLLAVYSDHIYRNQPMMIRENKPLISLWAQWYIGLMVPP 106 Query: 51 LL 52 L+ Sbjct: 107 LM 108
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 90.1 bits (223), Expect = 1e-23 Identities = 58/202 (28%), Positives = 86/202 (42%), Gaps = 14/202 (6%) Query: 4 VLITGCSSGIGRALADAFRDAGHHVWATARKPEDVEQL----SAAGYTARQ--LDVNDGE 57 ITG + GIG A+A G H+ A PE +E++ A A DV D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 58 AL----ARLADELESLDILINNAGYGAMGPLLDGGVDALRQQFETNVFAVVGVTRALFPL 113 A+ AR+ E+ +DIL+N AG G + + F N V +R++ Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 114 LRRSR-GLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAI 172 + R G +V +GS + AY +SKAA + L LELA + ++ V PG+ Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 173 ATQFASH---AQRQAEQVLAAD 191 T + AEQV+ Sbjct: 191 ETDMQWSLWADENGAEQVIKGS 212
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 138 bits (348), Expect = 6e-39 Identities = 57/368 (15%), Positives = 108/368 (29%), Gaps = 83/368 (22%) Query: 47 VVAPKVAGFIKDVLVEDNQQVTAGQLL---------------------ATIDARDYQAAL 85 + P +K+++V++ + V G +L A ++ YQ Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 86 DAA-------------------------------QAQLLVAQAQSADARATLERQAALIA 114 + + Q Q Q L+++ A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 115 QAEAAVKAAQAEAAFADHEVNRYSRLAEQGAGTVQNAQQARSGVDQARARLANAQAALVA 174 A + + + ++ +S L + A + + +A L ++ L Sbjct: 218 TVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQ 277 Query: 175 ARKQV----------------DILTAQVASADGQLKRAEAGLEKAQLDLSYTRITAPVDG 218 ++ +IL ++ + L K + + I APV Sbjct: 278 IESEILSAKEEYQLVTQLFKNEILD-KLRQTTDNIGLLTLELAKNEERQQASVIRAPVSV 336 Query: 219 MVGE-RALRVGAYVNPGARLLSVVPLQQAYVV-GNFQETQLTHVQPGQPVSISVDTFSGE 276 V + + G V L+ +VP V Q + + GQ I V+ F Sbjct: 337 KVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYT 396 Query: 277 K---LHGHVESIAPATGVTFAAVKPDNATGNFTKVVQRIPVKIVFDDGQPLLSRLRVGMS 333 + L G V++I D G V+ I + + + L GM+ Sbjct: 397 RYGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGNKNI--PLSSGMA 447 Query: 334 VEATIDTR 341 V A I T Sbjct: 448 VTAEIKTG 455
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 61.8 bits (150), Expect = 2e-12 Identities = 76/413 (18%), Positives = 155/413 (37%), Gaps = 29/413 (7%) Query: 33 LFGVLLAVLCAGLNESVTKISLADIRGAMGIGADEGAWLLAVYSAASVSAMAFAPWLATT 92 L + + + LNE V +SL DI W+ + A L+ Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 93 FSLRRFTMSAIGLFAVLGLLQPFAPNLHSLMLL-RVLQGFASGALPPMLMSVALRFLPPG 151 ++R + I + ++ + SL+++ R +QG + A P ++M V R++P Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 152 IKVYGLACYALTATFGPNLGTPLAGLWTEYVGWQWAFWQIILPSLLAIVCVGWGLPQDPL 211 + G +G + G+ Y+ W + ++L ++ I+ V + + Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSY----LLLIPMITIITVPFLMKLLKK 191 Query: 212 RLERFKQFDWRGVLLGLPAISCIVLGLSLGDRWGWFDSPLICWLLGGGLVLLVLFMFNEW 271 + FD +G++L I +L + + LI +L ++F+ + Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTS-YSISF----LIVSVLS-----FLIFVKHIR 241 Query: 272 SEPLPFFQLRMLQRRNLSFALVTLAGVLIVLSGVGSIPSAYLAQIQGYRPAQTSPLMMLV 331 PF + + ++ + ++G S+ + + A+ +++ Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP 301 Query: 332 A-MPQLIALPLTAALCNIRAVDCRWVLGIGLAMLAVSCVGSSLL--TSEWIRGDFYPFYL 388 M +I + L + R +VL IG+ L+VS + +S L T+ W F + Sbjct: 302 GTMSVIIFGYIGGILVDRRGP--LYVLNIGVTFLSVSFLTASFLLETTSW----FMTIII 355 Query: 389 LQVFGQPMAVLPLLMLS-TNGMTPQEGPFASSWFNTV----KGLAAVIAGGLL 436 + V G ++ ++ + QE S N +G I GGLL Sbjct: 356 VFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.4 bits (123), Expect = 1e-09 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 7/104 (6%) Query: 130 AQADYQQALAELAAAELNLKRTHIVATVDGYVTNLNIH-KGDYARTGEAVMAVV-DENSF 187 + ELA E + + I A V V L +H +G T E +M +V ++++ Sbjct: 307 TTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTL 366 Query: 188 WVYGFFEETKLPHVKVGDQAELQMMS-----GERIKGHVESIAR 226 V + + + VG A +++ + + G V++I Sbjct: 367 EVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL 410 Score = 48.3 bits (115), Expect = 1e-08 Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 19/163 (11%) Query: 2 KKFFSLIATLLVLVAAVAIGRQLWLHY---MTTP--WTRDGRVRADIINVAADVPGYVVD 56 + L+A ++ +A + T T GR + + V + Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKE----IKPIENSIVKE 109 Query: 57 VPVKDNQRVKKGDLLIQIDPEHYQLAVDQAKALVASRKATWEMRKVNAKRRADMDNLVIS 116 + VK+ + V+KGD+L+++ + + ++ + + + R R +++ L Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE-QTRYQILSRSIELNKLPEL 168 Query: 117 KENRDDASNIANAAQADYQQAL---------AELAAAELNLKR 150 K + + + +L + ELNL + Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 31.3 bits (71), Expect = 0.003 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 7/85 (8%) Query: 58 GEQLLAIIEDICQRTGADKVNLIGHSQGA--LSARYAAAKRPERVASVTSVA--GPNHGS 113 + LAII+ G KV LIG+S GA + R +V P+ S Sbjct: 100 TQDTLAIIDKYQAEFGTQKVILIGYSFGAEVIPFVLNEMPARYR-KNVLGAVLLSPSQSS 158 Query: 114 ELADHLAR--TAPGDSPQGRILKAV 136 + H++ T+ S + L V Sbjct: 159 DFEIHVSEMVTSDNQSARYLTLPEV 183
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 47.9 bits (114), Expect = 1e-09 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 2/143 (1%) Query: 26 TEGYHADRKEILRLLNESLATELVCVLRYKRHYFMASGIKASVAAEEFLEHATQEAEHAD 85 TE ++ + LN L+ + + R ++ G E+F E AE D Sbjct: 3 TENAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVD 62 Query: 86 KLAERIVQLGGEPDFNPDNLTKNSHAQ-YVAGNSLKEMVLEDLVAERIAIDSYREIIQYI 144 +AER++ +GG+P T+++ S EMV + + + +I Sbjct: 63 TIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLA 122 Query: 145 GD-KDPTTRRIFEDILAQEEEHA 166 + +D T +F ++ + E+ Sbjct: 123 EENQDNATADLFVGLIEEVEKQV 145
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.5 bits (141), Expect = 8e-13 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 11/175 (6%) Query: 3 PRAEQKLQTRQALLDAACLLMESGRGFGSVSLREVAKTAGIVPTGFYRHFSDMDALGLAL 62 ++ +TRQ +LD A L +G S SL E+AK AG+ Y HF D L + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQ-QGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 63 VAEIDTTFRQTIR--LVRQNEFELGGITDASVRIF-LDVVAAHR---AQFLFLAREQYGG 116 ++ + + L + + + + V R + +F E G Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 117 SQAVRQAIARLRQDISDDLATDLAR-MKRWQ---HLDSAALAVMADLVVKTVFAT 167 V+QA L + D + L ++ L + A++ + + Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN 177
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 90.9 bits (225), Expect = 5e-24 Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 14/243 (5%) Query: 5 VFITGATSGFGEATARRFAEAGWKLVLTGRRKERLDALCAELSAKTEV-HGLVLDVRDRK 63 FITGA G GEA AR A G + E+L+ + + L A+ DVRD Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 64 AMEQAIANLPAGFEKIRGLVNNAGLALGVDAAQNCSLDDWETMVDTNIKGLMYTTRLLLP 123 A+++ A + I LVN AG+ L + S ++WE N G+ +R + Sbjct: 71 AIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 124 RLIAHGRGASILNVGSVAGNYPYPGSNVYGGTKAFVGQFSLSLRCDLRGTGVRVSNIEPG 183 ++ R SI+ VGS P Y +KA F+ L +L +R + + PG Sbjct: 130 YMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 184 LCESEFSLV----------RFGGDQAKYDATYAGAEPIQPQDIAETIFWIL-NQPAHINI 232 E++ G + + +P DIA+ + +++ Q HI + Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 233 NSL 235 ++L Sbjct: 249 HNL 251
>PF06580#Sensor histidine kinase Length = 349 Score = 27.9 bits (62), Expect = 0.026 Identities = 20/140 (14%), Positives = 51/140 (36%), Gaps = 22/140 (15%) Query: 45 YGSTLLLLYSISTLYHSTRGRAKVIMRKLDHLSIYLLIAGSYTPFCLVSLRGPWGWSLFG 104 +G L + ++LY S + + + +++I L+ + R W Sbjct: 20 WGVYTLTGFGFASLYGSPKLHSMIF-----NIAISLMGLVLTHAYRSFIKRQGWLK---- 70 Query: 105 VVWGLAVIGMLQEIKPRSEARILSIIIYAVMGWIVLVAVKPLLNTLGTAG--FTWLAAGG 162 + I + + + ++ ++ ++ ++ LL + T FT A Sbjct: 71 --LNMGQIIL---------RVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALS 119 Query: 163 VFYTVGIIFFAFDSRFRHWH 182 + + V ++ F + + WH Sbjct: 120 IIFNVVVVTFMWSLLYFGWH 139
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 4e-15 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 1528 VMVVDDSVTVRKVTSRLLERHGMSVLTAKDGVDAMALLEEHRPDVLLLDIEMPRMDGFEV 1587 ++V DD +R V ++ L R G V + + D+++ D+ MP + F++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 1588 ATRIRRDARLKDLPIIMITSRTGQKHRDRAMAIGVNEYLGKP 1629 RI+ DLP+++++++ +A G +YL KP Sbjct: 66 LPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 5e-21 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 2 ARVLIVDDSPTEMYRLTEWLEKHGYQVLKASNGADGVALARQDKPDAVLMDIVMPGMNGF 61 A +L+ DD L + L + GY V SN A D V+ D+VMP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QATRQLSK-DPETSAIPVIVVTTKDQETDRIWATRQGARDFLTKPVEEDALIAKLKEVLG 120 ++ K P+ +PV+V++ ++ I A+ +GA D+L KP + LI + L Sbjct: 64 DLLPRIKKARPD---LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 A 121 Sbjct: 121 E 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.6 bits (173), Expect = 2e-17 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 6 KVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQ 65 ++V DD IR L AG +V S+ I ++ DV+MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 TCAVIKH-NSVFKDTPVILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIR 119 ++ D PV+++S+++ + G+ +L KPF EL+ I Sbjct: 65 ---LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 63.8 bits (155), Expect = 5e-14 Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 4/177 (2%) Query: 97 PFQDSKINKITPPPAARPEVVPPPTPQKSAVVTTAPKPQKVEPKPKESKAQPKPAAPAPD 156 P + + P + P P + P+P K P E P P Sbjct: 49 PISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPV 108 Query: 157 FDSSQLSSQIASLEAELSNEQQMYAKRPRIHRLNAASTMRDKGAWYKEEWRKKVERVGNL 216 Q + E P + A+ K + + R Sbjct: 109 KKVEQPKRDVKP--VESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRN-QP 165 Query: 217 NYPDEARRQQIYGNLRMMVSINRDGSLYEVLVLESSGQPVLDQAAQRIVRLAAPFAP 273 YP A+ +I G +++ + DG + V +L + + ++ + +R + P Sbjct: 166 QYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMR-RWRYEP 221
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.1 bits (73), Expect = 0.006 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 23/135 (17%) Query: 172 PSFRMISEAYRHLFHSHPYGN--PLGSTREGIEGIAPADLKRFHQRGYCASNLEMVVVGD 229 FRM+ E L+ G P + L+R++ G + ++ Sbjct: 776 AKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYN--GLPSMEIQGEAAPG 833 Query: 230 LSLAHAQAISQRISQALPQG-------------WSATELPIVPPATRATI------NVEQ 270 S A A+ + ++ LP G S + P + + + E Sbjct: 834 TSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYES 893 Query: 271 SGTSSAVLLALPMNV 285 +V+L +P+ + Sbjct: 894 WSIPVSVMLVVPLGI 908
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 32.1 bits (73), Expect = 0.002 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 15/74 (20%) Query: 79 KGLQQALQGRGWASVAVN-----WRGCSGEPNLLPRSYHSGASEDLAEIISHLRAQRPLA 133 K + LQ +GW V + W+ + ++D II +A+ Sbjct: 68 KAVGGILQQQGWPVVGWSSLKYYWKQKDPK----------DVTQDTLAIIDKYQAEFGTQ 117 Query: 134 PLYAVGYSLGGNVL 147 + +GYS G V+ Sbjct: 118 KVILIGYSFGAEVI 131
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 4e-12 Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 16/184 (8%) Query: 1 MAPRMK-----TRERIVQNSLELFNLQGERSVSTNHIAAHMEISPGNLYYHFPNKQAII- 54 MA + K TR+ I+ +L LF+ QG S S IA ++ G +Y+HF +K + Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 55 ALLFSQYEALVDSFLRPPQGRAATVEDK-RFYLKALLAAMW---NYRFLHRDLEHLLDSD 110 + + + L R L +L + R L + H + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 111 AELAARYRRFSERCLRQGQAIYRGFVEA----GILAMAPAQIESLTINAWI--VLTSWVR 164 E+A + CL I + + A + ++ + +I ++ +W+ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 165 FLST 168 + Sbjct: 181 APQS 184
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 220 bits (562), Expect = 7e-77 Identities = 74/154 (48%), Positives = 106/154 (68%) Query: 4 VLYPGTFDPITKGHGDLVERASRLFDHVIIAVAASPKKNPLFPLEQRVALAREVTKHLPN 63 +YPG+FDPIT GH D++ER RLFD V +AV +P K P+F +++R+ + HLPN Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLPN 62 Query: 64 VEVIGFSSLLAHFAKEQGANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESLFLTPSERY 123 +V F L ++A+++ A LRGLR +SDFE E Q+AN N+ LA D+E++FLT S Y Sbjct: 63 AQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTEY 122 Query: 124 SFISSTLVREIAALGGDITKFVHPVVADALTERF 157 SF+SS+LV+E+A GG++ FV VA AL ++F Sbjct: 123 SFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQF 156
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 5e-04 Identities = 38/165 (23%), Positives = 54/165 (32%), Gaps = 48/165 (29%) Query: 198 LAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDEHEALEVAAIQSISGHAP 257 R L L+ TG GTGK L+A L H+ Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVARAL---------HD--------------- 182 Query: 258 LNSWPQRPFRHPHHSASGP------ALVG-------GSSRPQPGEITLAHHGVLFLDEL- 303 PF + A+ P L G G+ G A G LFLDE+ Sbjct: 183 YGKRRNGPF-VAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 304 ---PEFERRVLEVLREPLESGEIVIARARDKVRFPARFQLVAAMN 345 + + R+L VL++ GE + + ++VAA N Sbjct: 242 DMPMDAQTRLLRVLQQ----GE--YTTVGGRTPIRSDVRIVAATN 280
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 37.3 bits (86), Expect = 2e-05 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 90 NAWDNEDFVKAVKATGKKQLIIAGVVTEVCVAFPALSALEEEFDVFVVTDASGTFNEMTR 149 +A+ + ++ ++ G+ QLII G+ + A A E+ F V DA F+ Sbjct: 127 SAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSL--- 183 Query: 150 DAAHDRMS 157 +M+ Sbjct: 184 --EKHQMA 189
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.0 bits (73), Expect = 0.009 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 37 GSAHASSQGGSMSADLILFNGKLHTVDREKPTATAVAIKDGRFVAVGN-------DAEAM 89 G + + +GG++ D ++ N + +D + +KDGR A+G + Sbjct: 57 GQSQVTREGGAV--DTVITNALI--LDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTI 112 Query: 90 AHKGAATQIIDLKQRTVIPGLNDSHLHLI 118 G T++I + + V G DSH+H I Sbjct: 113 I-VGPGTEVIAGEGKIVTAGGMDSHIHFI 140
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 37.3 bits (86), Expect = 2e-05 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 11/82 (13%) Query: 90 NAWDNEDFVKAVKATGKKQLIIAGVVTEVCVAFPALAALEEEFEVFVVTDASGTFNAMTR 149 +A+ + ++ ++ G+ QLII G+ + A A E+ + F V DA F+ Sbjct: 127 SAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFS---- 182 Query: 150 DAAHDRM------SRAGAQLMT 165 +M R +MT Sbjct: 183 -LEKHQMALEYAAGRCAFTVMT 203
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 97.6 bits (243), Expect = 1e-25 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%) Query: 1 MVGRNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGT 60 M G IL+ DD+A IR ++ AL AGYD N+ I DL++ D ++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 + +L R+K + D+P+++++A+ I+ E GA DY+ KPF EL+ + Sbjct: 61 NAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 121 LRRT 124 L Sbjct: 119 LAEP 122
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.014 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 25/99 (25%) Query: 329 LVFNAVKY----TQDEGNIRIRWWADAQGAHLSVQDSGVGIDAKHLPRLTERFYRVDSSR 384 LV N +K+ G I ++ D L V+++G + K+ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-SLALKNTKE------------ 309 Query: 385 ASNTGGTGLGLAIVKHVLMRHRGK---LEISSVPGHGST 420 TG GL V+ L G +++S G + Sbjct: 310 -----STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.021 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 7/42 (16%) Query: 211 PSGNFVRILHPDGTMGVYLHLMRGSVVVAEGQRVRQGQMLAK 252 SG I + + ++ V EG+ VR+G +L K Sbjct: 92 HSGRSKEIKPIEN--SIVKEII-----VKEGESVRKGDVLLK 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.9 bits (210), Expect = 1e-20 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 4/124 (3%) Query: 1 MSKVNVLVVDDAPFIRDLVRKCLRNAFPGMAIDDAVNGRKAMAMLGKEAFDLVLCDWEMP 60 M+ +LV DD IR ++ + L A G + N + DLV+ D MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRA--GYDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 EMSGLELLTWCRQQPALKHLQFIMVTSRGDKENVIQAIQAGVSDFVGKPFTNEQLLTKVK 120 + + +LL ++ A L ++++++ I+A + G D++ KPF +L+ + Sbjct: 59 DENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 121 KALT 124 +AL Sbjct: 117 RALA 120