>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 28.6 bits (64), Expect = 0.042 Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 34/110 (30%) Query: 83 LNRLNAGVLPEASLQAIYREIISCSFFLEGGLTIAYLGPKGTWSH----------QAALK 132 +NRL G P+ + +++++ + + +G SH A+ Sbjct: 128 MNRL--GFQPD-RVLTVWQQLRAMAN----------VGEMTLMSHFAEAEHPDGISGAMA 174 Query: 133 QFGKSCELIPCQ----------SFKDV-FDMVDRGKAQYGVVPVENSSEG 171 + ++ E + C+ + FD V G YG P + Sbjct: 175 RIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDI 224
>adhesinb#Adhesin B signature. Length = 310 Score = 186 bits (474), Expect = 2e-59 Identities = 81/317 (25%), Positives = 144/317 (45%), Gaps = 27/317 (8%) Query: 4 RILIP-FLCLLGLF-CSLQAQDAPV----LKIAALHPVLGDMARAIGGSRVQVADLLRPN 57 R L+ L +GL CS Q L + A + ++ D+ + I G ++ + ++ Sbjct: 5 RFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVATNSIIADITKNIAGDKINLHSIVPVG 64 Query: 58 GNLHSFEPSPQDIAAAGRARLVLASGKNLE----PYLPKLKDAL--GGSAQILDLGASVP 111 + H +EP P+D+ +A L+ +G NLE + KL + + + V Sbjct: 65 QDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENKDYYAVSEGVD 124 Query: 112 DVPVEEDTADHDHEHDGDCCAHGPNDPHWWHTPANMKRAARTLAATLTRLDPAHEQDYKA 171 + +E + D PH W N A+ +A L+ DPA+++ Y+ Sbjct: 125 VIYLEG----QSEKGKED--------PHAWLNLENGIIYAQNIAKRLSEKDPANKETYEK 172 Query: 172 GLSRWNRKMDQLSSWARKELADIPETDRVLVTGHAAMNHFCREFGFRSISIQGISREDEG 231 L + K+ L A+++ +IP +++VT +F + + S I I+ E+EG Sbjct: 173 NLKAYVEKLSALDKEAKEKFNNIPGEKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEG 232 Query: 232 NSAQLASTLKKLRSAGVKALFPEYSSNPKSLTEIAKSLNIPVARPINTDGLAPEGH---T 288 Q+ + ++KLR V +LF E S + + + ++K NIP+ I TD +A +G + Sbjct: 233 TPDQIKTLVEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYAKIFTDSVAEKGEEGDS 292 Query: 289 FESMFKQNTGIIKEALS 305 + SM K N I E LS Sbjct: 293 YYSMMKYNLEKIAEGLS 309
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 468 bits (1207), Expect = e-165 Identities = 156/480 (32%), Positives = 248/480 (51%), Gaps = 46/480 (9%) Query: 1 MDKTRIIVVEDNIVYCEYICNMLAREGYDTVKAYHLSTAKKQLQQAADDDIVVSDLRLPD 60 M I+V +D+ + L+R GYD + +T + + A D D+VV+D+ +PD Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA-AGDGDLVVTDVVMPD 59 Query: 61 GDGIELLRWMRKEGKMQPFIIMTDYAEVHTAVESMKLGSIDYIPKKLIEDKLVPLIRTIQ 120 + +LL ++K P ++M+ TA+++ + G+ DY+PK +L+ +I Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 121 KERQAGLNRIPVFAREG-------SAFQKIMHRIKLVATTDMSVMIFGENGTGKEHIAHH 173 E + +++ +++G +A Q+I + + TD+++MI GE+GTGKE +A Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 174 LHEKSKRAGKPFVAVDCGSLSRELAPSAFFGHVKGAFTGADSTKKGYFHEAEGGTLFLDE 233 LH+ KR PFVA++ ++ R+L S FGH KGAFTGA + G F +AEGGTLFLDE Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239 Query: 234 VGNLALETQQMLLRAIQERRYRPVGDKSDRSFNVRIIATTNEDLEAAVSEKRFRQDLLYR 293 +G++ ++ Q LLR +Q+ Y VG ++ +VRI+A TN+DL+ ++++ FR+DL YR Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299 Query: 294 LRDFVITMPPLRDCQEDIMPLAEFFREIANKELECNASGFSSEARKALLTHAWPGNVREL 353 L + +PPLRD EDI L F + A KE + F EA + + H WPGNVREL Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVREL 358 Query: 354 RQKIMGAVLQAQEGVVTKEHLELAVPK--PTSPVSFALRNDAE----------------- 394 + + V+T+E +E + P SP+ A Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 395 ------------------DKERIMRALKQTNGNRCAAAELLGISRTTLYGKLEEYGLKYK 436 + I+ AL T GN+ AA+LLG++R TL K+ E G+ Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVY 478
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 71.4 bits (175), Expect = 2e-15 Identities = 43/251 (17%), Positives = 92/251 (36%), Gaps = 45/251 (17%) Query: 88 VKAGQMLAEIDKLPVQLDVQRAEASKAQAIAGIARSKADIQ----QAKAKHQQARLDRER 143 V ++L + Q + + K Q + + +A+ + +R+++ R Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQ--KYQKELNLDKKRAERLTVLARINRYENLSRVEKSR 236 Query: 144 --------AEKLGPGDAL--SKSSYDQYIADEETARANVAVAEASLQEAEASLKQAEAAL 193 ++ A+ ++ Y + + + ++ + E+ + A+ + Sbjct: 237 LDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLF 296 Query: 194 KKEMR----------------------NLEYTTIKSPVDGVVVKRLVNIGQTVVSSMSAS 231 K E+ + + I++PV V + V+ VV+ +A Sbjct: 297 KNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVT--TAE 354 Query: 232 SLFYIATDLSKLKIWAAVNEADIGSIRKGQEVLFTVDAFAGRKF---KGTVDKIRLDATM 288 +L I + L++ A V DIG I GQ + V+AF ++ G V I LDA Sbjct: 355 TLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIE 414 Query: 289 --TSNVVTYIV 297 +V ++ Sbjct: 415 DQRLGLVFNVI 425 Score = 46.0 bits (109), Expect = 2e-07 Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 17/159 (10%) Query: 60 VDVGAQVSGIIMEFGKD------LNGKV----VDYSSPVKAGQMLAEIDKLPVQLDVQRA 109 V++ A +G + G+ N V V V+ G +L ++ L + D + Sbjct: 80 VEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKT 139 Query: 110 EASKAQAIAGIARSKADIQQAKAKHQ-------QARLDRERAEKLGPGDALSKSSYDQYI 162 ++S QA R + + + + E++ +L K + + Sbjct: 140 QSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Query: 163 ADEETARANVAVAEASLQEAEASLKQAEAALKKEMRNLE 201 + N+ A A + + E + E L+ Sbjct: 200 NQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 29.2 bits (65), Expect = 0.035 Identities = 41/171 (23%), Positives = 63/171 (36%), Gaps = 26/171 (15%) Query: 225 RIPQLEAQVASSKNQLAVLLGTYNSRVELTLPKASVF---EKTPTVPVGLPSELLRRRPD 281 LE ++A + L ++RV L +PK S+F +K+P+ V + P Sbjct: 131 YQRALEGELARTIETLG---PVKSARVHLAMPKPSLFVREQKSPSASV-----TVTLEPG 182 Query: 282 VIAAEADLHAAVANVGVAVADLYP----------RFSLTGSLSSRGGDFGQLFRENNNAW 331 E + A V V AVA L P + S R + QL N+ Sbjct: 183 RALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVES 242 Query: 332 SLGG---NLLQPLFRGGALRATVRAQ--KAAAEQAAETYRKTLITAVSEVE 377 + +L P+ G + A V AQ A EQ E Y + + + Sbjct: 243 RIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLR 293
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 61.6 bits (149), Expect = 9e-12 Identities = 45/264 (17%), Positives = 86/264 (32%), Gaps = 15/264 (5%) Query: 15 KLRRRLVTAAPAAAPKVKFVSPAAE---GVEVVKPR--FLTPELQAKLAQEQEEAARRAA 69 + R + V P + E+ + + P A ++ E A + Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 70 EQAEADRIAAEKAAAEQEAARIAAEKEAARIAAEQEAARI-KAEQEAAEAARIAAEKEAA 128 ++++ + A R A++ + + A + + ++ E E KE A Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET-KETA 1104 Query: 129 RVAAEEERARL----AAELEKKEAASAPQPEPSVDAQIQDALAKVAEAQKALAEAQAAAL 184 V +EE+A++ E+ K + +P+ E S Q Q A+ + + E Q+ Sbjct: 1105 TVE-KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 185 AQAAGVAPAAVQTPEPSVPEPAPAGGAPKLKVFKTAAAPAAAEKSPVAAPESA-VPKLKV 243 A PA + P V + A P ES+ PK + Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223 Query: 244 LKS--PVGAAPASSVAPAAVPQPV 265 +S V + + V Sbjct: 1224 RRSVRSVPHNVEPATTSSNDRSTV 1247 Score = 53.1 bits (127), Expect = 4e-09 Identities = 42/296 (14%), Positives = 85/296 (28%), Gaps = 54/296 (18%) Query: 10 SPEPPKLRRRLVTAAPAAAPKVKFVSPAAEGVEVVKPRFLTPELQAKLAQEQEEAARRAA 69 +PE K + + T ++ P+ R + E A Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA 1041 Query: 70 EQAEADRIAAEKAAAEQEAARIAAEKEAARIAAEQEAARIKAEQEAAEAARIAAEKEAAR 129 E ++ + + EQ+A A+ R A++ + +KA + E A+ +E + + Sbjct: 1042 ENSK--QESKTVEKNEQDATETTAQ---NREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 130 VAAEEERARLAAELEKKEAASAPQPEPSVDAQIQDALAKVAEAQKALAEAQAAALAQAAG 189 +E A + E + K Q P V +Q+ K +++ +A+ A Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVPKVTSQVS---PKQEQSETVQPQAEPA------- 1146 Query: 190 VAPAAVQTPEPSVPEPAPAGGAPKLKVFKTAAAPAAAEKSPVAAPESAVPKLKVLKSPVG 249 E P ++ + A E Sbjct: 1147 -------------RENDPT----------VNIKEPQSQTNTTADTEQP------------ 1171 Query: 250 AAPASSVAPAAVPQPVVAEGVSPAAGAPPAGDGGIQPPAGTESARDMAASVDKSRS 305 + + V QPV + P + +++ K+R Sbjct: 1172 ----AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223
>SECA#SecA protein signature. Length = 901 Score = 31.4 bits (71), Expect = 8e-04 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 86 DLRRLAAVLEEIAELEAQTAKL--DTLRAEAEELRNRLTAKQ 125 LRR+ V+ I +E + KL + L+ + E R RL + Sbjct: 17 TLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGE 58
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 28.8 bits (64), Expect = 0.040 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 18/82 (21%) Query: 244 VDTYRSGGKGGQNVNKVETAVRITHIPSGVIVACQNERSQLRNKEEAMNMLRAKLYQIEE 303 V TYRS V+KVET I S + + +E+ N L+A ++Q+E+ Sbjct: 31 VQTYRSVEHTDGKVSKVETGSEIADFGSKI---------GFKGQEDLGNGLKA-VWQLEQ 80 Query: 304 DKKQAEADRQYSEKGDIGWGNQ 325 A + GWGN+ Sbjct: 81 GASVA--------GTNTGWGNK 94
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 27.5 bits (61), Expect = 0.024 Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 117 EKFRNEAERHGLTVPEWASEALDALSS 143 F +AE+ GL V + EAL+ + + Sbjct: 322 RHFVQQAEKEGLDVKRFDQEALELMKA 348
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 35.2 bits (81), Expect = 0.001 Identities = 50/341 (14%), Positives = 95/341 (27%), Gaps = 65/341 (19%) Query: 253 SLSQPYVVTAEVDVPGGVKVSDTAGQYSPAETGSLGYDAPRMIVRGDKFPTGTAQWAARV 312 + PY + G + S TAG+Y G+ + PR F T Sbjct: 357 IFTVPYSSVPLLQREGHTRYSITAGEYRS---GNAQQEKPR-------FFQSTLLHGLP- 405 Query: 313 KRWAPALEDCAGLEVAASPKITSITPADAEHRGYSSAAVTHELTSGQINGKSARIKWGKV 372 + G ++A Y + G + S + Sbjct: 406 --AGWTIY--GGTQLA---------------DRYRAFNFGIGKNMGALGALSVDMTQANS 446 Query: 373 RVDLRVRATDPPDTVKQYFPEYGGKSGTGDRWIGTLTFEVTTTNVGYASYRVDRAGTVES 432 + P+ G R++ + + TN+ YR +G + Sbjct: 447 TL-----------------PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYF-N 488 Query: 433 VSDDGGSPGDDETSGSYDTSALYKNFLKSYYEATRALPYDGSATVHDDFDQVCGGRLSIT 492 +D S + + D K YY TV + L ++ Sbjct: 489 FADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGR--TSTLYLS 546 Query: 493 GGLKEWEAMRSVIQEISLDLKTGVSDVTV-------------GAPEQISLQDSIDRSRQL 539 G + + +V ++ L T D+ G + ++L +I S L Sbjct: 547 GSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWL 606 Query: 540 AEALRRTAWADSSTSAGGGSSGGGSGSGGG--GSSGADDEV 578 + S++ + G + G G+ D+ + Sbjct: 607 RSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNL 647
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 33.9 bits (77), Expect = 0.002 Identities = 44/225 (19%), Positives = 74/225 (32%), Gaps = 70/225 (31%) Query: 344 GEVWAKA------SRLEKN---ALFSYTGNGYARINNDLRKGKS--------NAKAKQIA 386 G++W K ++L N + Y GY INN L ++K I Sbjct: 261 GDLWGKENYSDWSNKLTPNELADVNDYMRGGYTAINNYLISNGPLNNPNPELDSKVNNIE 320 Query: 387 KVIDRCKVPQDMVVFRGCGVY---------------KELKDAL--NWKGEEITDELVDML 429 + +P +++V+R G E DA W+G+ IT Sbjct: 321 NALKLTPIPSNLIVYRRSGPQEFGLTLTSPEYDFNKIENIDAFKEKWEGKVIT------- 373 Query: 430 NLSVVGNPLKDEGFMSAAVAEGKGFMNRPVLFRILLKKKTRAIYAEPFSRFGAGAGKDWD 489 + + + MSA F R ++ RI + K + Y Sbjct: 374 YPNFISTSIGSVN-MSA-------FAKRKIILRINIPKDSPGAYLSAIPG---------- 415 Query: 490 GLSPQTYFSSEDEIIIQKGGTLKFLQFHNQNG----KLIIDCELI 530 ++ E E+++ G K + + KLI+D LI Sbjct: 416 -------YAGEYEVLLNHGSKFKINKVDSYKDGTVTKLILDATLI 453
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.025 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Query: 18 VIIYGPEGVGKSTLAAGL-PAPLFLDTE 44 V++ G G+GKSTL L F DT Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTH 626
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 36.0 bits (83), Expect = 2e-05 Identities = 27/141 (19%), Positives = 62/141 (43%), Gaps = 16/141 (11%) Query: 15 FQLRAYYVSEFSIRTNKRFDNKKEPDLKFNSLKFELDFEELDSEKGAQKSEHLKGFNLWE 74 Q++ YV + S F+ P + + +L D A++ +L+E Sbjct: 20 LQIQRIYVKDVS------FEAPNLPHIFQQDWEPKLS---FDLSTEAKQVGD----DLYE 66 Query: 75 VRLNVSMDEKKVEENNIPYSFFIALSGLFSFPQKNPTPKDDQLRFVRINGPSILYGFVRE 134 V LN+S++ ++ + + +G+F+ + + P++L+ + RE Sbjct: 67 VCLNISVETTMESSGDVAFICEVKQAGVFTISG---LEEMQMAHCLTSQCPNMLFPYARE 123 Query: 135 IVNSFYDKGPYPSPVLPTISF 155 +V+S ++G +P+ L ++F Sbjct: 124 LVSSLVNRGTFPALNLSPVNF 144
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 40.6 bits (95), Expect = 2e-05 Identities = 57/282 (20%), Positives = 91/282 (32%), Gaps = 80/282 (28%) Query: 279 RARLISPDKNKVTFKDVAGISEAKEEVWELVEFLRNPEKFRDLGATIPRGVLMVGAPGTG 338 + R + + + G S A +E++ ++ +++ G GTG Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL----------ARLMQTDLTLMITGESGTG 172 Query: 339 KTLLARAIAGES---NASFYS-----ISGSDFVEMFVGV------GASRVRD-MFEQA-K 382 K L+ARA+ N F + I G GA FEQA Sbjct: 173 KELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEG 232 Query: 383 RTAPSLIFIDEIDA-----------VGRQRGYGMGGGNDEREQTLNALLVEMDGFENNSN 431 T +F+DEI V +Q Y GG S+ Sbjct: 233 GT----LFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPI----------------RSD 272 Query: 432 VIVIAATNRADILDPALLRPGRFDRQ--------VVVNLPDVRGR--------EQILQVH 475 V ++AATN+ D+ + G F R+ V + LP +R R +Q Sbjct: 273 VRIVAATNK-DL--KQSINQGLF-REDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQA 328 Query: 476 ARKVKMAPGVSFERIARGTS-GFSG--AQLANLVNEAALLAA 514 ++ E + + + G +L NLV L Sbjct: 329 EKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYP 370
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.005 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Query: 14 GKQWIFENYNRVFTSGIT-----ILKGYSGCGKTTLLKILAG 50 GK + + RV G +L+G G GK+TL+ L G Sbjct: 577 GKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVG 618
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.3 bits (78), Expect = 0.004 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 18/94 (19%) Query: 418 VVHLNAYHALRCRFSA-----------------GVLDEEYHAIRTLSVEGVTKEFLRSGR 460 +N H R A G ++Y R ++ V K L G Sbjct: 526 AADMNRVHPFRDWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYIL-MGH 584 Query: 461 VLDNIDLTVKRGEMVCILGPSGSGKSTLLSMLAG 494 V ++ K V + G G GKSTL++ L G Sbjct: 585 VARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVG 618
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 70.5 bits (172), Expect = 2e-16 Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 9/197 (4%) Query: 1 MHTARLQYDRIIITGASSGFGEAFAGTLAPHTAELVLIARNEAALRQLAAALEKRHSGLH 60 M+ ++ ITGA+ G GEA A TLA A + + N L ++ ++L+ H Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE--ARH 58 Query: 61 ASVLPCDLADEASLNMLISRLDSLPPGRTLLINNAG---AGDYGDFSDGRWEKIRFLLRL 117 A P D+ D A+++ + +R++ +L+N AG G SD WE + Sbjct: 59 AEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEAT---FSV 115 Query: 118 NVESLTRLCHALVPSMK-RNGGDIINLSSLGALLPIPDFAVYAATKAYVSSLSEALRLEL 176 N + ++ M R G I+ + S A +P A YA++KA ++ L LEL Sbjct: 116 NSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL 175 Query: 177 REHGIRVLVVCPGPVST 193 E+ IR +V PG T Sbjct: 176 AEYNIRCNIVSPGSTET 192
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 33.6 bits (76), Expect = 0.002 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 471 APKPPPAPKPESGGTAETPADKRKKEEAPGNKPAPAPAPPASPQTAP 517 A P P PE AE PA+ E PG +P P P P +P P Sbjct: 320 AEAPNAQPLPEVS-PAENPANNPAPNENPGTRPNPEPDPDLNPDANP 365 Score = 31.3 bits (70), Expect = 0.012 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Query: 478 PKPE-SGGTAETPADKRKKEEAPGNKPAPAPAPPASPQTAP 517 P+P+ + G+AE P + E +P PA PAP +P T P Sbjct: 311 PRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRP 351
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 401 bits (1033), Expect = e-138 Identities = 132/364 (36%), Positives = 194/364 (53%), Gaps = 30/364 (8%) Query: 172 EERAALVAENEKLRELLTTN--PGELIGNCSTMLQVYEQIRQVAPSDATVLIRGSSGTGK 229 AL + +L + L+G + M ++Y + ++ +D T++I G SGTGK Sbjct: 114 IIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGK 173 Query: 230 ELVARAVVNLSGRKDKPLVTLNCAAMPENLLESELFGHEKGSFTGATSRRIGRAEAADGG 289 ELVARA+ + R++ P V +N AA+P +L+ESELFGHEKG+FTGA +R GR E A+GG Sbjct: 174 ELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGG 233 Query: 290 TLFLDEIGDLSLQMQVKLLRFLQEKTFSRVGSNRELHADVRFIAATSRNLEELMAASKFR 349 TLFLDEIGD+ + Q +LLR LQ+ ++ VG + +DVR +AAT+++L++ + FR Sbjct: 234 TLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFR 293 Query: 350 EDLYYRLNIFPIVMPDLSKRKGDVMLLAEHFLSKFNLKYGKDIKRLSTPAINMLMAYHWP 409 EDLYYRLN+ P+ +P L R D+ L HF+ + K G D+KR A+ ++ A+ WP Sbjct: 294 EDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWP 352 Query: 410 GNVRELENCMERAVITAQDDCIYGYNLPASLQMPSHDVPYSRDG---------------- 453 GNVRELEN + R D I + L+ D P + Sbjct: 353 GNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENM 412 Query: 454 -----------EAPADLPTMVDSFERELIVAALKRSPGNMSAAARELGISPRVLHYKMHR 502 ++ E LI+AAL + GN AA LG++ L K+ Sbjct: 413 RQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472 Query: 503 LGLQ 506 LG+ Sbjct: 473 LGVS 476
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.3 bits (169), Expect = 1e-16 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 9/148 (6%) Query: 6 KSQSDRSAETSGKILRAAQKLFALRGFNGVTMRAVASEAGVNLASIVYYFENKEGLYLAV 65 + + ET IL A +LF+ +G + ++ +A AGV +I ++F++K L+ + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 66 YRQYAEPLMKARMKMLKEADLHPSLRAYARAFIEPAFRLFLDESLGGPDHVRLLWRLP-Q 124 + + +++ +A + R + + E + RLL + Sbjct: 63 WELSESNI--GELELEYQAKFPGDPLSVLREILIHVLESTVTE-----ERRRLLMEIIFH 115 Query: 125 EPEYLG-RKIYDEFYAPSIQEMIARIRR 151 + E++G + + E RI + Sbjct: 116 KCEFVGEMAVVQQAQRNLCLESYDRIEQ 143
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 37.3 bits (86), Expect = 5e-05 Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 1/60 (1%) Query: 1 MDIPLPPLEAPPLPPPMDIPLPPLPEVPLPPPVDIPLPPPAGIPPLPPLSGRPTVPRQKK 60 D+ P PP P ++ P P P + + P P P V Q K Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP-KPVKKVQEQPK 111 Score = 30.0 bits (67), Expect = 0.010 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Query: 10 APPLPPPMDIPLPPLPEV-PLPPPVDIPLPPPAGIPPLPPLSGRPTVPRQKK 60 L PP + PP P V P P P IP PP + +P + Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPV 103
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 28.4 bits (63), Expect = 0.041 Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 108 RRYYLSGEKSYEKAKGENPKPATITFTDKGGYCYYK 143 R Y + +Y A+G+N +T+TD G + K Sbjct: 128 RPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTK 163
>cdtoxinb#Cytolethal distending toxin B signature. Length = 269 Score = 31.1 bits (70), Expect = 0.002 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 13/123 (10%) Query: 63 YAKAIDYSGGSYGVGILSREKPLSVKRIPLPGREEARVLLMAEF-RDYWFCVTHLSLTKE 121 Y A+D GG + ++S + V + P R+ R LL D +F +++ Sbjct: 103 YFSAVDALGGRVNLALVSNRRADEVFVLS-PVRQGGRPLLGIRIGNDAFFTAHAIAMRNN 161 Query: 122 DSSASIDMIAALAAKCSKP------FFIAGDFNLTPDS-----EPITRMKKYFILLSDPA 170 D+ A ++ + P + I GDFN P R I + Sbjct: 162 DAPALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNLTVPVRRASEIISPAAAT 221 Query: 171 QKT 173 Q + Sbjct: 222 QTS 224
>PF06580#Sensor histidine kinase Length = 349 Score = 26.8 bits (59), Expect = 0.017 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 5/86 (5%) Query: 14 IGWPLGFKLSQTPGTGPGKFAACIACSVFSMVLSGFLLWLAQRNIPIGTAYAVW-----T 68 IGW + + G ++ L G +L A R+ + Sbjct: 18 IGWGVYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQII 77 Query: 69 GIGALGTFLVGILWFGDSSNIWRMLA 94 ++G++WF +++IWR+LA Sbjct: 78 LRVLPACVVIGMVWFVANTSIWRLLA 103
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 37.3 bits (86), Expect = 3e-04 Identities = 63/226 (27%), Positives = 88/226 (38%), Gaps = 21/226 (9%) Query: 706 AGGLAVNS-LWSSASNAAALGGNVLSRLSVPRLTDRHARNLWGMGLGDFARQRSRGGVDG 764 GG+ + S LW + SNA + RL RL A WG G + +R G Sbjct: 616 TGGVGLASTLWYAESNA------LSKRLGELRLNP-DAGGAWGRGFAQRQQLDNRAG-RR 667 Query: 765 YDYNGGGYSVGADSGMGGEGEGIWGIAFGQLCGHARS-RDFQGRNTQDTLMGSLYWGRLM 823 +D G+ +GAD + G G W + G L G+ R R F G T S++ G Sbjct: 668 FDQKVAGFELGADHAVAVAG-GRWHL--GGLAGYTRGDRGFTGDGGGHT--DSVHVGGYA 722 Query: 824 EESNRACWIFKGSLTWAETRNNMTSRLGGAPASTGKWNNETWLAQAEVSRTADCAGGWRL 883 + + +L + N+ A GK+ A E R A GW L Sbjct: 723 TYIADSGFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHADGWFL 782 Query: 884 TPFVRMEFTHGRQDAFREQGGYG-RDFGG-AALKRLSIPVGLEIGR 927 P + A+R G RD GG + L RL GLE+G+ Sbjct: 783 EPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRL----GLEVGK 824
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1097 bits (2839), Expect = 0.0 Identities = 519/1027 (50%), Positives = 715/1027 (69%), Gaps = 6/1027 (0%) Query: 1 MPDFFIRRPIFAWVVALLISLMGLLAIPSLPIAQYPDIAPPVITLRTTYPGASAQDTEEA 60 M +FFIRRPIFAWV+A+++ + G LAI LP+AQYP IAPP +++ YPGA AQ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTAVIEKEINGAPGLMYMSATSSSDGTVEIAATFTQGTDPDIAAVEVQNRLKIVESRLPE 120 VT VIE+ +NG LMYMS+TS S G+V I TF GTDPDIA V+VQN+L++ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 SVRREGVFVEKSSNNIQAMISLSST-GSLNDTELGEWASARIIPELKRVKGVGRVELFGA 179 V+++G+ VEKSS++ + S ++ ++ ++ + L R+ GVG V+LFGA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 ETSMRIWPDPEKLEALGLTPTDIVNAVAAQSERIIIGDIGGAAVPESAPINAGVVAEDAF 239 + +MRIW D + L LTP D++N + Q+++I G +GG +NA ++A+ F Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 RTPEEFASIALRTLSDGSSVKLGDVARVELGANSYAFFSRCNGQTATGMAIKMAPGSNAV 299 + PEEF + LR SDGS V+L DVARVELG +Y +R NG+ A G+ IK+A G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 ETMGLLKAKMDELSRDFPPGVSYQIPYETTHFVEISIRKVISTLLEAVLLVFLVMFLFLQ 359 +T +KAK+ EL FP G+ PY+TT FV++SI +V+ TL EA++LVFLVM+LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NFRATLIPTLVVPVALLGTFAVMWLSGFSINMLTMFGMVLSIGILVDDAIVVVENVERIM 419 N RATLIPT+ VPV LLGTFA++ G+SIN LTMFGMVL+IG+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 MEEGLDARRATVKAMKQIGGAIVGITAVLVAVFVPMAFFSGAVGNIYRQFAVTLIVSISF 479 ME+ L + AT K+M QI GA+VGI VL AVF+PMAFF G+ G IYRQF++T++ +++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCAAMLKPSSVEHQE-KKGFFGWFNRTIHRSTDRYGRAVSGMIRRPVRS 538 S +AL LTPALCA +LKP S EH E K GFFGWFN T S + Y +V ++ R Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 539 LFLYALIIAGAGYLYLTLPTSFLPEEDQGNFMAMVSLPAGTLQKETSVRLREVEDYLMRH 598 L +YALI+AG L+L LP+SFLPEEDQG F+ M+ LPAG Q+ T L +V DY +++ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 599 EP--VEHVYSVGGFSFMGSGTNMAMLFVGLKNWDERPGENSSVQAIIDRVNARFAGDGQM 656 E VE V++V GFSF G N M FV LK W+ER G+ +S +A+I R Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 MVMALNMPALPELGNSSGFDFRLQDKGGLGYARMAEARDELLARANANP-NLAGVYFSGQ 715 V+ NMPA+ ELG ++GFDF L D+ GLG+ + +AR++LL A +P +L V +G Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 ADTPRLHVSIDREKAFSMGVPIAEISNSLAVMFGSSYVGDFMHDSQVRRIMVQADGKSRL 775 DT + + +D+EKA ++GV +++I+ +++ G +YV DF+ +V+++ VQAD K R+ Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 NGNDIEDLHVRNDQGKLLPLSSFVRLDWTAGPPQLTRYNNYPSFTINGSSAPGKSSGDAM 835 D++ L+VR+ G+++P S+F W G P+L RYN PS I G +APG SSGDAM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 NALEQITASLPQGVGFEWTGQSYEEKLAGSQATLLFGLSILIVFLVLAALYESWSIPLAV 895 +E + + LP G+G++WTG SY+E+L+G+QA L +S ++VFL LAALYESWSIP++V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 ILVVPLGLLGALLAVFLRDMPNDIYFKVGLITTIGLSAKNAILIVEVAREFYR-EGMNAA 954 +LVVPLG++G LLA L + ND+YF VGL+TTIGLSAKNAILIVE A++ EG Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 EAAVAAAKLRLRPILMTSLAFGAGVIPLAFAHGAAAGAQRAVGTGVLGGIITATLLAIFL 1014 EA + A ++RLRPILMTSLAF GV+PLA ++GA +GAQ AVG GV+GG+++ATLLAIF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1015 VPLFFRL 1021 VP+FF + Sbjct: 1021 VPVFFVV 1027 Score = 89.5 bits (222), Expect = 4e-20 Identities = 91/526 (17%), Positives = 177/526 (33%), Gaps = 50/526 (9%) Query: 532 IRRPVRSLFLYALIIAGAGYLYLTLPTSFLPEEDQGNFMAMVSLP-AGTLQKETSVRLRE 590 IRRP+ + L +++ L LP + P + P A + +V + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV-TQV 64 Query: 591 VEDYLMRHEPVEHVYSVGGFSFMGSGTNMAMLFVGLKNWDERPGENSSVQAIIDR----- 645 +E + + + ++ S + GS T G + + +Q Sbjct: 65 IEQNMNGIDNLMYMSSTSDSA--GSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 646 ----VNARFAGDGQMMVMALNMPALPELGNSSGFDFRLQDKGGLGYARMAEARDELLARA 701 ++ + +MV S D + + + L+R Sbjct: 123 QQQGISVEKSSSSYLMVAGFV---------SDNPGTTQDDISDYVASNVKDT----LSRL 169 Query: 702 NANPNLAGVYFSGQADTPRLHVSIDREKAFSMGVPIAEISNSLAV----MFGSSYVGDFM 757 + V G + + +D + + ++ N L V + G Sbjct: 170 ---NGVGDVQLFGAQY--AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPA 224 Query: 758 HDSQVRRIMVQADGKSRLNGNDIEDLHVR-NDQGKLLPLSSF--VRLDWTAGPPQLTRYN 814 Q + A + + N + + +R N G ++ L V L + R N Sbjct: 225 LPGQQLNASIIAQTRFK-NPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARIN 282 Query: 815 NYPSFTINGSSAPGKSSGDAMNA----LEQITASLPQGVGFEW---TGQSYEEKLAGSQA 867 P+ + A G ++ D A L ++ PQG+ + T + + Sbjct: 283 GKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVK 342 Query: 868 TLLFGLSILIVFLVLAALYESWSIPLAVILVVPLGLLGALLAVFLRDMPNDIYFKVGLIT 927 TL I++VFLV+ ++ L + VP+ LLG + + G++ Sbjct: 343 TLFEA--IMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVL 400 Query: 928 TIGLSAKNAILIVE-VAREFYREGMNAAEAAVAAAKLRLRPILMTSLAFGAGVIPLAFAH 986 IGL +AI++VE V R + + EA + ++ ++ A IP+AF Sbjct: 401 AIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460 Query: 987 GAAAGAQRAVGTGVLGGIITATLLAIFLVPLFFRLTAGKRGPDHPE 1032 G+ R ++ + + L+A+ L P +H E Sbjct: 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHE 506
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.8 bits (106), Expect = 3e-07 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 7/139 (5%) Query: 65 EVRARVTGIIQERCYQEGQTVRPGDLLFKIDP-------APLQAVLDECKAAVARARAVL 117 E++ I++E +EG++VR GD+L K+ Q+ L + + R + + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 118 SDAEDKAARYSSLVAKGAVSIREHKQARAEEERARAEYAAAAASLEQARLNLEYTRVEAP 177 E L + ++ + +++ Q LNL+ R E Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 178 ISGRVRRALVTEGAFANQN 196 Sbjct: 218 TVLARINRYENLSRVEKSR 236 Score = 31.0 bits (70), Expect = 0.010 Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 10/94 (10%) Query: 99 LQAVLDECKAAVARARAVLSDAEDKAARYSSLVAKGAVSIREHKQARAEEERARAEYAAA 158 L K+ + + + + A+++ + L + + + Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLF---------KNEILDKLRQTTDNIGLL 314 Query: 159 AASLEQARLNLEYTRVEAPISGRV-RRALVTEGA 191 L + + + + AP+S +V + + TEG Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGG 348
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.2 bits (70), Expect = 0.012 Identities = 43/250 (17%), Positives = 64/250 (25%), Gaps = 35/250 (14%) Query: 148 DAFGEHAPLVHAYSDAWRQWQDARRAYDDLEHAEAATAREIELLRHQVDEIDSAAFTPEE 207 + E + + + +LE +A + +E + + T E Sbjct: 89 ELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEA 148 Query: 208 VL--------TLEERWQRARNGTRLREQVSKMLS---MLEETDVPGLGTQLREL------ 250 LE+ + A N + K L E L L Sbjct: 149 EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTA 208 Query: 251 -TRAAHELERMDASTAAWLAPLAGVNLELKEIEGRLADYSAELDCDPRELFQLEERINLL 309 + LE A+ AA A L + L+ E LE R L Sbjct: 209 DSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLE---AEKAALEARQAEL 265 Query: 310 ESLKMKYGPSFEDVCSRREEAASRLDRIEHRTERLEELRASIAVLRKQMDAAGQALTRAR 369 E + + +I+ L A A L Q Q L R Sbjct: 266 EKALEGA----------MNFSTADSAKIKTLEAEKAALEAEKADLEHQS----QVLNANR 311 Query: 370 QDSAPRLAAS 379 Q L AS Sbjct: 312 QSLRRDLDAS 321
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 126 bits (317), Expect = 2e-40 Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 8/132 (6%) Query: 9 GFLEEFKAFALKGNVIDLAVAVVIGGAFNKIVSVFVSSIITPIIGYLTSGVNLAYLVLKL 68 ++EF+ FA++GNV+DLAV V+IG AF KIVS V+ II P +G L G++ + L Sbjct: 2 SIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTL 61 Query: 69 GD-------VELKYGELLQATIDFLIIAFSVFVAIKLIGALRRKSEEAPAAPAPKPDDVV 121 D V + YG +Q DFLI+AF++F+AIKLI L RK EE AAPAP + V Sbjct: 62 RDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAAPAPT-KEEV 120 Query: 122 LLEQIRDILQKQ 133 LL +IRD+L++Q Sbjct: 121 LLTEIRDLLKEQ 132
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 49.2 bits (117), Expect = 1e-10 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 2/107 (1%) Query: 14 QLLFAVLVIVSLLLLGVVLMQRPKQEGLGAAFGAAITDQAFGAR-TTDVLKKATVYFGTA 72 + L V +IV++ L+G++++Q+ K +GA+FGA + FG+ + + + + T T Sbjct: 3 EALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLATL 62 Query: 73 FMVLCLGLGMLINRQHVKSSESLLSPEMMKAAARQEASVPAKTPEEL 119 F ++ L LG IN + + + + PAK ++ Sbjct: 63 FFIISLVLGN-INSNKTNKGSEWENLSAPAKTEQTQPAAPAKPTSDI 108
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 60.7 bits (147), Expect = 4e-14 Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 8 RKSKGFTLIELLVVIAIILTLAGIAMTVVNGVMEKSKVTTARSDCNGLQTAVENYMLDNG 67 K +GFTL+E++VVI II LA + + + G EK+ A SD L+ A++ Y LDN Sbjct: 5 DKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNH 64 Query: 68 RVP 70 P Sbjct: 65 HYP 67
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 77.0 bits (189), Expect = 2e-17 Identities = 42/212 (19%), Positives = 81/212 (38%), Gaps = 43/212 (20%) Query: 50 YKGVVKIEMDSLTPDYATPWNTGRYQGGIGTGFLIGENAFMTNAHVVSNAERIYI----- 104 Y V I++++ T + I +G ++G++ +TN HVV Sbjct: 87 YAPVTYIQVEAPTGTF------------IASGVVVGKDTLLTNKHVVDATHGDPHALKAF 134 Query: 105 ------SMYGDSRKIPARVKFIAHDADLALLE----ADDPRPFKGIRPFEFSKN-LPHLE 153 Y + ++ + + DLA+++ + + ++P S N + Sbjct: 135 PSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVN 194 Query: 154 DEVRVIGYPIGGNR--LSVTRGVVSRIDFTTYAHPRNTEHLTIQVDAAINPGNSGGPVLM 211 + V GYP + ++G ++ + + +Q D + GNSG PV Sbjct: 195 QNITVTGYPGDKPVATMWESKGKITYL-----------KGEAMQYDLSTTGGNSGSPVFN 243 Query: 212 GNK-VIGVAFQGLNNANNTGYVIPTPVIRHFL 242 VIG+ + G+ N N I +R+FL Sbjct: 244 EKNEVIGIHWGGVPNEFNGAVFI-NENVRNFL 274
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.3 bits (68), Expect = 0.006 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 10/102 (9%) Query: 52 LVVLLLLHLLVIGGVYVRSTWFRNTAETVEMAAALPAPPTVPQRPAPAAPPAALPQVPQA 111 ++ + +H V+ G+ S V LPAP A PQ Q Sbjct: 18 TLLSVCIHGAVVAGLLYTS---------VHQVIELPAPAQPISVTMVAPADLEPPQAVQP 68 Query: 112 PPAAPVTITQPEQVVDARPNRQPAPAVEEHIPDAAPVAGPAR 153 PP PV +PE P ++ +E+ P P P + Sbjct: 69 PPE-PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK 109 Score = 28.0 bits (62), Expect = 0.039 Identities = 12/85 (14%), Positives = 20/85 (23%) Query: 85 ALPAPPTVPQRPAPAAPPAALPQVPQAPPAAPVTITQPEQVVDARPNRQPAPAVEEHIPD 144 A +P P P + P+ + A + A Sbjct: 90 APVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKP 149 Query: 145 AAPVAGPARHIVRTGDTWERVARDN 169 VA R + R + A+ Sbjct: 150 VTSVASGPRALSRNQPQYPARAQAL 174
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.8 bits (67), Expect = 0.029 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 11/79 (13%) Query: 247 GGH-TELLLEQGATVWGIDR-----DADARRAAMLRLARFGSRFKVLAGNFQD---VESI 297 G H ++ LLE G V GID D ++A + LA+ F+ + D + + Sbjct: 13 GFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQ--PGFQFHKIDLADREGMTDL 70 Query: 298 LSQQGVSRVDGLLADLGVS 316 + RV L V Sbjct: 71 FASGHFERVFISPHRLAVR 89
>PF07520#Virulence protein SrfB Length = 1041 Score = 28.4 bits (63), Expect = 0.014 Identities = 12/38 (31%), Positives = 19/38 (50%) Query: 33 GCALLLLSGRRLDLPTVKAYTREKFQQLIDKIETTPGY 70 GC ++LL+GR LP V+A E ++ + Y Sbjct: 803 GCDVVLLTGRPSRLPAVRAIVEEMLVVPPHRLISMHRY 840
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 39.9 bits (93), Expect = 2e-05 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 22/118 (18%) Query: 1 MNTRTVTSLWVGGE--LPLMSVLCIKSFLDH--GHAFQLFT---YRNYDNIPAGTLVRDA 53 M + + W+ G P + C+ S + + Y+ + +IP Sbjct: 66 MRQKYIFICWLQGIEKAPYIVQQCVASVKKNSGDFKVIIIDGNNYKEWVDIP-------- 117 Query: 54 RDILPEEAIFHDSHNSLAPFSDWFRMKFLSQEGGFWVDMDVICLGDELPTSPLWFCRE 111 D L + + + A FSD R+ L + GG W+D V P + Sbjct: 118 -DFLIKR--WQEGKMLDAWFSDILRLFLLCKYGGLWIDATVYMFDKV----PNYIVES 168
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 32.2 bits (73), Expect = 6e-05 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Query: 3 SGAIGSAGAGVGAAP-GSVVGARIGALIGDVTG 34 S + S +G+ AA S+VGA + AL+G VTG Sbjct: 372 STVLASVSSGISAAATTSLVGAPVSALVGAVTG 404
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 26.8 bits (59), Expect = 0.018 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 8 IKDTGSWSPFYYW-IVGVVTMCALMWMLPNNYPREPWENIIRVLLGALFIFLFFVCPVWM 66 I D + P+Y I+ VTM + M P +P + I + +F F P + Sbjct: 455 IHDLSAQDPYYILPILMGVTMFFIQKMSPTTVT-DPMQQKIMTFMPVIFTVFFLWFPSGL 513 Query: 67 IISAIRYWKT 76 ++ Y+ Sbjct: 514 VL----YYIV 519
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 30.6 bits (69), Expect = 0.004 Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 20/113 (17%) Query: 96 RIDSFLKKHPYLERKDVPSEMVTASASGLDPHITPESAY---------------VQVKRV 140 +++ +L K P LE+K SE+++ ++ + ++ AY ++ Sbjct: 86 QVNQYLSKVPELEQKQNVSELLSLLSNSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDA 145 Query: 141 AKARGMEEGAVRSLVDQAVEKPLLGMFGTE---KVNVLKLNIALEKADPSGKH 190 K R E + LV+QA+ + G + ++ + Sbjct: 146 LKGRP-ELAHLSHLVEQALVS-MAEEQGETIVLGARITPEAYRESQSGVNPLQ 196
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.5 bits (74), Expect = 0.003 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 44 QLNEETKRLIASYRRDPSEANRLALRKQVGINYDKVLDRKKAKLEELKRTARHASKI 100 +L E +IA P+ L ++ G N KAKL EL+ K+ Sbjct: 269 ELGGENYNVIARINGKPAAG--LGIKLATGANALDTAKAIKAKLAELQPFFPQGMKV 323
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 32.4 bits (73), Expect = 0.009 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 10/104 (9%) Query: 188 RCGILHRDIKPANLLLDEA-GEVHVSDFGLAFLLQGRNEVIEKEGAQSGTLRYMSPERLV 246 + G++H DIKP N++ D A GE V D G L R+ E + T + +PE V Sbjct: 263 KAGVVHNDIKPGNVVFDRASGEPVVIDLG----LHSRS----GEQPKGFTESFKAPELGV 314 Query: 247 HGVN-TFSSDQYAFGVTLYELVAKSPPFPGLAPEELMERICREP 289 + + SD + TL + P + P + + I EP Sbjct: 315 GNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRFITSEP 358
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 29.0 bits (65), Expect = 0.045 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 14/77 (18%) Query: 67 ILAVLLLTWVLAAPVWPGKGSGQTVVFILD--DSANMAPFRQEAVNAVSEDMDTILRCGI 124 + ++L+LT L AP G V F L S++ F A+ I Sbjct: 6 VFSLLILTLFLTAPAVEG-----DVSFRLSGATSSSYGVFISNLRKALP---YERKLYDI 57 Query: 125 PVTWVLMGSRASGQPLY 141 P+ + S G Y Sbjct: 58 PL----LRSTLPGSQRY 70
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 26.8 bits (59), Expect = 0.015 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 8/75 (10%) Query: 27 QTVTTEGAGGKLKVTATC-DGNLTELVIDPSIIDPSDSEFLQELLLQTINAAIAKGKETA 85 TV + G KLKV +G+ L I+ + +D+ + A Sbjct: 477 NTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADA---ASSTSSDLGATFNTRTVNN 533 Query: 86 AAEMKK----LTGGL 96 A + + GGL Sbjct: 534 AVLVGSGETVVVGGL 548
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 30.7 bits (69), Expect = 0.014 Identities = 11/43 (25%), Positives = 17/43 (39%) Query: 651 PEPVQEELAPLPAPPPSASTIPAPKPHTPQKKTAEPVQEASKE 693 PEP E + P P P PKP K + ++ ++ Sbjct: 71 PEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 113
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 25.9 bits (56), Expect = 0.016 Identities = 10/21 (47%), Positives = 16/21 (76%) Query: 29 TVFSGKDLVTHGSERLEDEFP 49 T ++G D+V HG+E+ +EFP Sbjct: 567 TGYTGGDVVNHGTEQDNEEFP 587
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.8 bits (69), Expect = 0.006 Identities = 27/151 (17%), Positives = 61/151 (40%), Gaps = 4/151 (2%) Query: 23 DNEEALTKERRECASRYKNLNGLRGEFTEEKTKYVDFLVKNEALTNDINALTKEKDELEV 82 + + E A+ L K + L + AL EK +LE Sbjct: 243 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEH 302 Query: 83 KNQELASANEAKKSDLQTQQTALAELQSKSKDMESIQAIADR-IKGLEEESKQLEVVKQA 141 ++Q L + ++ + DL + A +L+++ + +E I++ + L + K+ Sbjct: 303 QSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQ 362 Query: 142 EQGKHDAIVAETEQLVVNNAALRQLKADQDA 172 + +H + + + ++ A+ + L+ D DA Sbjct: 363 LEAEHQKLEEQNK---ISEASRQSLRRDLDA 390 Score = 30.8 bits (69), Expect = 0.006 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 1/108 (0%) Query: 62 KNEALTNDINALTKEKDELEVKNQELASANEAKKSDLQTQQTALAELQSKSKDM-ESIQA 120 + L + K + L + A + + AL + S I+ Sbjct: 191 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 250 Query: 121 IADRIKGLEEESKQLEVVKQAEQGKHDAIVAETEQLVVNNAALRQLKA 168 + LE +LE + A A+ + L AAL KA Sbjct: 251 LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKA 298 Score = 27.7 bits (61), Expect = 0.047 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 1/104 (0%) Query: 62 KNEALTNDINALTKEKDELEVKNQELASANEAKKSDLQTQQTALAELQSKSKDME-SIQA 120 KN L+ + AL DEL + L + + + EL+++ D+E +++ Sbjct: 72 KNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEG 131 Query: 121 IADRIKGLEEESKQLEVVKQAEQGKHDAIVAETEQLVVNNAALR 164 + + K LE K A + + E + + A Sbjct: 132 AMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 175
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.1 bits (75), Expect = 0.001 Identities = 25/148 (16%), Positives = 57/148 (38%), Gaps = 6/148 (4%) Query: 48 EIRTWTSLRNDMIKNRGLAAEENLSLISNKASVTQQRDEQLSKEAELKEEEVQLNADLSK 107 + + +N L N ++ DE + + KE+ + + LS+ Sbjct: 51 TLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSE 110 Query: 108 INKQIEELKSKLQDFG------VSSVQEIQEKMESLEASNKKLQEDIDQIKSATEVASKR 161 +I+EL+++ D ++ K+++LEA L ++ A E A Sbjct: 111 KASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNF 170 Query: 162 RAEQASELASRQKEQAEYRAALAKNGEE 189 ++++ + + E+A A A+ + Sbjct: 171 STADSAKIKTLEAEKAALEARQAELEKA 198
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 31.3 bits (70), Expect = 0.003 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Query: 30 PSASGRPSLANPAPEPTPADDEQPNPPPPSDPGS---PQGDP 68 P ++ P+ A P PE +PA++ NP P +PG+ P+ DP Sbjct: 317 PGSAEAPN-AQPLPEVSPAENPANNPAPNENPGTRPNPEPDP 357
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 28.9 bits (64), Expect = 0.011 Identities = 16/57 (28%), Positives = 24/57 (42%) Query: 13 TGARGNGLEEHDVACVIARHLFAQLKDMGHTVHVLDFPDKGNTEDLNATIKVANADG 69 +GA + LE+ D+ I L A + V+DF D N + A+ DG Sbjct: 93 SGAMSHKLEKADLLKAIQEQLIANVHSNDDYFEVIDFASDATITDRNGKVYFADKDG 149
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.010 Identities = 28/228 (12%), Positives = 61/228 (26%), Gaps = 11/228 (4%) Query: 135 LSNTASIIAAQQAQQNANTSSTNAETASQAAKTATDA------AATAAARAEEAEGYAGS 188 + A ++ + A S ++T + + AT+ A A +A Sbjct: 1025 VPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNE 1084 Query: 189 AWASKSAAADSATAAG--TSATNAARDAKSANDAKTDVESLAATWP--ETVSNGEKKIVD 244 S S ++ T T+ AK + +V + + + S + + Sbjct: 1085 VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144 Query: 245 AGNEAVTAIQDKQADSVLAVGRASQTAQQNIAGARTDAVAAVQTAQERAVGAITPLVQRA 304 E + K+ S ++ + + V T P Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTP 1204 Query: 305 ETAKEAIDQA-EGRINTAATNAATSATSAANSATEAQQALEAIPQVDA 351 T + ++ + + S AT + + D Sbjct: 1205 ATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252
>SECA#SecA protein signature. Length = 901 Score = 30.2 bits (68), Expect = 0.013 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 9/49 (18%) Query: 18 LVPAFLASCREASERQDQIRFGLFPNVTHVQGLVARHFS-----RTGEG 61 L+P A REAS+R FG+ + G + + RTGEG Sbjct: 63 LIPEAFAVVREASKR----VFGMRHFDVQLLGGMVLNERCIAEMRTGEG 107
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 56.8 bits (137), Expect = 1e-10 Identities = 45/137 (32%), Positives = 60/137 (43%), Gaps = 17/137 (12%) Query: 24 VDDGKSTLIGRLLYDSKLIFDDQLAELRKASEKNGTAGAGKIDYALLLDGLRAEREQGIT 83 VD GK+TL LLY+S I +L + K GT D ER++GIT Sbjct: 12 VDAGKTTLTESLLYNSGAI--TELGSVDK-----GTT---------RTDNTLLERQRGIT 55 Query: 84 IDVAYRYFTTPRRKFIIADCPGHEQYTRNMATGASTADAAIILIDARHGVLTQTKRHAFI 143 I F K I D PGH + + S D AI+LI A+ GV QT+ Sbjct: 56 IQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA 115 Query: 144 VSLLKIRHLIVAVNKMD 160 + + I I +NK+D Sbjct: 116 LRKMGIP-TIFFINKID 131
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.003 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Query: 37 SDKGKVTIGETAQIKGDITAGDVRIYGNVEGKVTS 71 D G + +G+ A IK + A YG + GKV + Sbjct: 375 KDIGFINVGQNAIIK--VEAFPYTRYGYLVGKVKN 407
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 31.7 bits (72), Expect = 0.002 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 13/62 (20%) Query: 124 RSYLDNNKIVIFAAGTGNPFFST-------------DTTAALRASEINAEVVMKATSVDG 170 + ++ IVI + G G P D A E+NA++ M T V+G Sbjct: 180 KKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNG 239 Query: 171 VY 172 Sbjct: 240 AA 241
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.3 bits (84), Expect = 2e-04 Identities = 44/223 (19%), Positives = 81/223 (36%), Gaps = 18/223 (8%) Query: 133 TVSVAWSVLSDVMKPGQMKRLFALVASGSSLGAMAGPAVTAALAGVAGYLWLFLAAAVFL 192 T +VA + ++D+ + R F +++ G +AGP + + G + + F AAA+ Sbjct: 112 TGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNG 171 Query: 193 ALAMLAGMYLHRWRDGNSPEDEETGVLLPADCRERPLGGNPFAGASAVFRSPFLMG-IGL 251 + L G + A R G A AVF L+G + Sbjct: 172 LNFLTGCFLLPESHKGERRPLRREALNPLASFRWA-RGMTVVAALMAVFFIMQLVGQVPA 230 Query: 252 FIILLAGTNTFLYFELMSVVASSFPDPVRQTQVFGALDVVVQGCTMLLQVFLAGRIVRKF 311 + ++ G + F + ++ + FG L L Q + G + + Sbjct: 231 ALWVIFGEDRFHWDATTIGISLA---------AFGILHS-------LAQAMITGPVAARL 274 Query: 312 GLAALLAAVPVLISLGFVWMAFAPVFAVVAVVMAVRRIGEYGM 354 G L + G++ +AFA + +M + G GM Sbjct: 275 GERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGM 317
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 56.5 bits (136), Expect = 3e-11 Identities = 36/190 (18%), Positives = 79/190 (41%), Gaps = 7/190 (3%) Query: 176 FIVPGLIAVLVLINSILSG-SLSIAREREEGTFDQLLVAPYTPGEILLGKGTASVVTGIM 234 F+ G++A + + + R + T++ +L G+I+LG+ + + Sbjct: 68 FLAAGMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAAL 127 Query: 235 QAVFVVLVAMFWFRIPFQGSIWLLSAALLLFIVTAAAIGLCISSFAQSLQQAIVGTFLLL 294 + +VA + ++ L L + A+ +G+ +++ A S I L++ Sbjct: 128 AGAGIGVVAAALGYTQWLSLLYALPVIALTGLAFAS-LGMVVTALAPSYDYFIFYQTLVI 186 Query: 295 VPMVMLSGFATPISSMPEIFQDLTLLNPMRYGLELIQRIFLEGAG-----FLDLWPLFAA 349 P++ LSG P+ +P +FQ P+ + ++LI+ I L + ++ Sbjct: 187 TPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIV 246 Query: 350 IMAVTVAAVL 359 I A+L Sbjct: 247 IPFFLSTALL 256
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 35.7 bits (82), Expect = 2e-04 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 2/145 (1%) Query: 196 AREYERGTLESLFVTPVGSGEILAAKAATNFLLGMVSLAISMLFAAFVFGIPIRGSLTLL 255 R + T E++ T + G+I+ + A ++ A + AA + SL Sbjct: 92 GRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQ-WLSLLYA 150 Query: 256 LAVSALFLIVALGLGLVISTATKNQFLACQFAIMGTFMPALMLSGFLYDILNMPPAVRAI 315 L V AL + LG+V+ TA + F P L LSG ++ + +P + Sbjct: 151 LPVIALTGLAFASLGMVV-TALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTA 209 Query: 316 TYLIPARYYVTLLQTLFLAGDIPSV 340 +P + + L++ + L + V Sbjct: 210 ARFLPLSHSIDLIRPIMLGHPVVDV 234
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 75.3 bits (185), Expect = 4e-17 Identities = 46/287 (16%), Positives = 98/287 (34%), Gaps = 31/287 (10%) Query: 67 PGQKLATLETVRLRQAADEARQIAEAARQNYLRVKNGPRAEEIAQARANVQAAEATLNNA 126 P + + E V + + + ++ + + E A + E Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233 Query: 127 GMRSKRLEALAETKSISRQEADDAVASRQVAAANLDVARKQLELLLAGSRE--------- 177 R +L ++I++ + A L V + QLE + + Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 178 --------EDVAQALAQYNQAKASLTIREQNLKDAVLYAPGNGVVRN-RILEKGDMASPQ 228 + + Q L E+ + +V+ AP + V+ ++ +G + + Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353 Query: 229 KPVYNIS-LNHTKWVRAYLTESQLGKVKPGFSATVRNDSFPDTGFKGTVGFISSVAEFTP 287 + + I + T V A + +G + G +A ++ ++FP T + VG + ++ Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA- 412 Query: 288 KNVETPDLRTALVYEVRIIVD-------DPDNRLRLGAPATVTIPLG 327 D R LV+ V I ++ + + L G T I G Sbjct: 413 ----IEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTG 455
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 31.3 bits (70), Expect = 0.003 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Query: 13 REEAIPGSEGEGPGGGAPPPASPVDSPPPANPPVPS-NPYDFSGGAEQPDPDPGSPPPLS 71 R + PGS E P P SP ++P AN P P+ NP G P+PDP P + Sbjct: 312 RPDLTPGS-AEAPNAQPLPEVSPAENP--ANNPAPNENP----GTRPNPEPDPDLNPDAN 364 Query: 72 PQEETE 77 P + + Sbjct: 365 PDTDGQ 370
>FLAGELLIN#Flagellin signature. Length = 507 Score = 32.3 bits (73), Expect = 0.008 Identities = 22/217 (10%), Positives = 62/217 (28%), Gaps = 13/217 (5%) Query: 137 MATTAAQAFAYHALQASKNAHADAETASQAAKTATDAAATAATRTEEAEGYAGSAWASKR 196 A + + ++ + A+ A A + + Y G + Sbjct: 230 NAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDT 289 Query: 197 AAADSAAAADTSATNADRDAKSAHDAKTAVESLAATWPETVSNGEKKIVDAGNEAVTAIQ 256 + ++ N ++ + D ++ A ++ N +V+ + Sbjct: 290 KTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTK 349 Query: 257 DKQADSVLAVGRASQTAQQNIAGARTDAVAAVQTAQERAVGAITPLVQRAETAKEDIDQA 316 ++ A + + I + A + G + + A Sbjct: 350 NESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTA---------- 399 Query: 317 ERRINTAATNAANSATSAGNSATAAANALAAIPQVDE 353 + ++A + ++A A+ +A+ +VD Sbjct: 400 ---SGVSTLINEDAAAAKKSTANPLASIDSALSKVDA 433
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 35.2 bits (81), Expect = 2e-04 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 3/99 (3%) Query: 20 QAQERPSYIAIEANSGKLLFSSNAEEKRPVASLSQVATAMVALDWVARTRLPLDTFIAVP 79 Q R I ++ SG+ L + A+E+ P+ S +V L V L+ I Sbjct: 35 QLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYR 94 Query: 80 QEAFGLRAGNP-MDLQPGDRLTLRDALYSTLLGSDNVSA 117 Q+ L +P + D +T+ + + + SDN +A Sbjct: 95 QQD--LVDYSPVSEKHLADGMTVGELCAAAITMSDNSAA 131
>PF07132#Harpin protein (HrpN) Length = 356 Score = 28.5 bits (63), Expect = 0.045 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 13/112 (11%) Query: 70 WKAQQTVNKPTESQ-----QLDNVIEFPALAKAASASPGLANLLAKALGAGVGGTVGALG 124 + +Q + N + SQ Q N+ E L+ + + +++ LG G+GG +LG Sbjct: 24 FPSQSSQNGGSPSQSAFGGQRSNIAE--QLSDIMTTMMFMGSMMGGGLGGGLGGLGSSLG 81 Query: 125 GGAGAAHLARHLGAGDTATALTGILGMGAGGLGGVLIGSSVANKVTPPNEGD 176 G G L G L LG G G G +G ++ + N Sbjct: 82 GLGGG------LLGGGLGGGLGSSLGSGLGSALGGGLGGALGAGMNAMNPSA 127
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 34.8 bits (79), Expect = 0.001 Identities = 48/270 (17%), Positives = 97/270 (35%), Gaps = 20/270 (7%) Query: 109 NPSTHRYFVRLSDAVTVSVDSVDLSWWAYAHALKAQESMESLADAWPETVSEAKQDVHAA 168 N + R V ++ + + + + L E +A ++ + Sbjct: 109 NLAPLDVINRSLTIVGNALQQKNQKLLLNQKKITSLGAKNFLTRTAEEIGEQAVREGNIN 168 Query: 169 KEDALAAIRDKQADAVLAVGRAQKTATDKIAGTQA--DAVSAVQAAGKEAQGTITPLVQQ 226 +A D++ + + A K T+ I+ Q + ++A +A+ + A Sbjct: 169 GPEAYMRFLDREMEGLTAAYNV-KLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAA 227 Query: 227 AETAKDDIDQAERRINTAATNAATSATSAANSATAAQQALAAMPQVDASGNMTLAGGLTA 286 AE + +QA ++ A N + + ATAA + L + Q AS ++ + Sbjct: 228 AEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAV 287 Query: 287 AGAINANGGVNIPLAVGAATDTGAV----------NRLYAAGMAGVTGLFTLPAYLDTGA 336 G + A+ + + + T + + YA GM LP ++ A Sbjct: 288 LGRVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAK--LGLPPSVNLNA 345 Query: 337 ITATGTAATTVSIPGQYAKTNIPSGTHSTI 366 + A+ TV +P TN G +T+ Sbjct: 346 VAK---ASGTVDLP--MRLTNEARGNTTTL 370
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 27.1 bits (60), Expect = 0.044 Identities = 10/25 (40%), Positives = 13/25 (52%) Query: 25 GVAVQIAAHLARYLRERGQSVSVID 49 G A I H+++ L E G V ID Sbjct: 7 GAAGFIGFHVSKRLLEAGHQVVGID 31
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 28.0 bits (62), Expect = 0.039 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 8/63 (12%) Query: 111 KIEKDFLYEVCNYYRNIRNN----FIHKGEK----SPTKPKKKNGEYIVLSKKIKKLEIH 162 K E+D E+ + ++ N GE P + KK ++IV+ +K K + Sbjct: 103 KSEEDHTEEINDKIYSLNYNELEVLAKNGETIENFVPKEGVKKADKFIVIERKKKNINTT 162 Query: 163 NSD 165 D Sbjct: 163 PVD 165
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.0 bits (72), Expect = 0.012 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 15/132 (11%) Query: 631 EELHQKRLQVEQMEAELDSQEEEQRGDNGFFFEWEKVDLAALKSRIKEIKGDLLAAEELA 690 ++ + +EA E+ G F + + L++ ++ + E Sbjct: 246 AKIKTLEAEKAALEARQAELEKALEGAMNFS-TADSAKIKTLEAEKAALEAEKADLEH-- 302 Query: 691 FLRDFLDRKNTVKEWKAEIKTLETKLSIQTRQACDALSEEEGKMLVVDKKWLESLRSGIH 750 ++ V A ++L L R+A L E K L K E+ R + Sbjct: 303 --------QSQVLN--ANRQSLRRDLDAS-REAKKQLEAEHQK-LEEQNKISEASRQSLR 350 Query: 751 EDVERVMHAFAQ 762 D++ A Q Sbjct: 351 RDLDASREAKKQ 362
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.8 bits (69), Expect = 0.005 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 89 ENAIAEAERNGNTGRANMLREQLARANSNNQWYLNELKQKADAGDAGAQREL 140 +N I+EA R + RE + + +Q L E + ++A +R+L Sbjct: 338 QNKISEASRQSLRRDLDASREAKKQLEAEHQ-KLEEQNKISEASRQSLRRDL 388
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 40.9 bits (95), Expect = 1e-05 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Query: 147 VLDGLDYLHGRGIYHRDIKPGNILFDE-RGLPVLIDFGAALNKPEVTCTVTQGEFSYAYA 205 +LD ++L G+ H DIKPGN++FD G PV+ID G E F+ ++ Sbjct: 254 LLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGE-----QPKGFTESFK 308 Query: 206 SPEQITGKGEIGPWTDFYALAATWYGLISSIPVEP 240 +PE G +D + + +T I P Sbjct: 309 APELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNP 343
>ENTEROTOXINA#Heat-labile enterotoxin A chain signature. Length = 258 Score = 30.0 bits (67), Expect = 0.039 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 9/42 (21%) Query: 268 RNRERRDDLFRRLSSLPGAAVLPSEANFLLFRLAGAPHGLAA 309 RNRE RD +R L+ + P+E +RLAG P A Sbjct: 159 RNREYRDRYYRNLN------IAPAEDG---YRLAGFPPDHQA 191
>PF06580#Sensor histidine kinase Length = 349 Score = 33.3 bits (76), Expect = 0.001 Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 10/135 (7%) Query: 64 VWLITGGGALFAAFPYVYASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRGWDT 123 V+ +TG G S+ ++ M L+LT +R+ F +Q G Sbjct: 22 VYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTHAYRS----FIKRQGWLKLNMGQII 77 Query: 124 TFSI-SSLLAALLIGVAMGNVTKGIPLDDHGNFTGTFLSLLNPYSILLGLTTVALFAMHG 182 + + ++ ++ VA ++ + + + T P ++ + V + M Sbjct: 78 LRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFT-----LPLALSIIFNVVVVTFMWS 132 Query: 183 GIYLLMKTQGSLQEQ 197 +Y + ++ Sbjct: 133 LLYFGWHFFKNYKQA 147
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.013 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 17/97 (17%) Query: 454 NNTVSRPRTVSAQAPSPK----------KTPKEKRKPEEKG-QDAPTTDSAAPEKQKAAS 502 N ++R P+P + K++ K EK QDA T + E K A Sbjct: 1014 NEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAK 1073 Query: 503 S------SEAAAAREEASEENSVVTETEESPSVPAEE 533 S A+ + + + TET+E+ +V EE Sbjct: 1074 SNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110
>TYPE3OMBPROT#Type III secretion system outer membrane B protein family signature. Length = 538 Score = 26.6 bits (58), Expect = 0.014 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 10/70 (14%) Query: 3 LVGSNIFGRE-ALAEIRVNAAQDLGDRRGE-TNISLLGNPGFAQSVR--------GAKVG 52 L +++ G E ++ + +VNA + L +RGE T + + + G + V V Sbjct: 282 LTPTSLTGGEESMLKDQVNALKGLNSKRGEPTKLLIRNSDGLLKEVSVNLKVVTFNFGVN 341 Query: 53 TTALQLGAGL 62 AL++G G Sbjct: 342 ELALKMGLGW 351
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 32.0 bits (72), Expect = 0.029 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 26/112 (23%) Query: 493 ATAEHVIGGNNKGASTTLTGNTNVTVKDNAIVAGAIIGGSTSSHNAVTTITGNTSVLVTN 552 + E N + T++ NT+ + + + G+ H + I G+ S Sbjct: 301 SKNEDQSTQNTDSQTRTISKNTS-----TSRTHTSEVHGNAEVHASFFDIGGSVS---AG 352 Query: 553 IQHSNSATVNLGDFGNVTAQNFITGGSAWTANQTSGTTIQGNTSVTINVGDA 604 +SNS+TV + + G W ++ +N D Sbjct: 353 FSNSNSSTVAIDH------SLSLAGERTW------------AETMGLNTADT 386
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.2 bits (83), Expect = 0.002 Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 17/171 (9%) Query: 449 TDYVWNAADEGGALEGSGNLEKTGSAKLTINMDNADYAGKVIL-GGGTLEMGNDAALGTG 507 TDY W++ + + G EK+ + L D ++ V G GTL + N+ G G Sbjct: 347 TDYSWSSNGKTSTITGG---EKSLNVDLADGKDKPNHGKSVTFEGSGTLTLNNNIDQGAG 403 Query: 508 DLAFDGGTLRYGTGVTADISGQISTTSKSSVKVDTNGNNVSWASADHYKALNLEKSGNGV 567 L F+G Y T+D +TT K + G V+W + + L K G G Sbjct: 404 GLFFEGD---YEVKGTSD-----NTTWKGAGVSVAEGKTVTW-KVHNPQYDRLAKIGKGT 454 Query: 568 LTLGG-AVYTGGLTVDEGGVSI---TSGSVQTKFSAGVTVNAGGTLAISST 614 L + G G L V +G V + T+GS Q F++ V+ TL ++ Sbjct: 455 LIVEGTGDNKGSLKVGDGTVILKQQTNGSGQHAFASVGIVSGRSTLVLNDD 505
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 185 bits (471), Expect = 1e-58 Identities = 83/336 (24%), Positives = 148/336 (44%), Gaps = 38/336 (11%) Query: 4 RILITGGAGFIGSHLSERLLREGHEVICMDNFFTGSKQNI----LHLTDYPGFEVIRHDV 59 + L+TG AGFIG H+S+RLL GH+V+ +DN ++ L L PGF+ + D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 60 T-------VPYVMEVDQIYNLACPASPPHYQFDPIHTMKTSVLGALNMLGLAKRCK-ARI 111 + ++++ + + +P +++ G LN+L + K + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 112 LQASTSEVYGDPMVHPQPETYWGNVN-PVGVRSCYDEGKRCAETLFMDYRRMNGVDVRII 170 L AS+S VYG P + +V+ PV S Y K+ E + Y + G+ + Sbjct: 122 LYASSSSVYGLN--RKMPFSTDDSVDHPV---SLYAATKKANELMAHTYSHLYGLPATGL 176 Query: 171 RIFNTYGPRMNPNDGRVVSNFIVQALKGEDITIYGTGKQTRSFQYVDDLVEGMVRMMDTE 230 R F YGP P+ + F L+G+ I +Y GK R F Y+DD+ E ++R+ D Sbjct: 177 RFFTVYGPWGRPD--MALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVI 234 Query: 231 GFSGP------------------VNLGNPEEFTMLELAEKVIEMTGSSSKTVFRPLPLDD 272 + N+GN +++ + + + G +K PL D Sbjct: 235 PHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGD 294 Query: 273 PTQRKPDIRLAKEKLGWKPHITLEKGLEKTIAYFRG 308 + D + E +G+ P T++ G++ + ++R Sbjct: 295 VLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 105 bits (264), Expect = 1e-28 Identities = 42/138 (30%), Positives = 69/138 (50%) Query: 4 SAYTILIAEDDDSIRHALTDVLTASGYEVLALEEGLAAIHAVRERNFDLALLDVAMPGAD 63 + TIL+A+DD +IR L L+ +GY+V + + DL + DV MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 64 GFQVLQVMSEERPGTPVIMLTARGEEEDRVQGLKLGADDYIVKPFSIRELLARIEAVLRR 123 F +L + + RP PV++++A+ ++ + GA DY+ KPF + EL+ I L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 124 SPERPRQLREIRIPGATL 141 RP +L + G L Sbjct: 122 PKRRPSKLEDDSQDGMPL 139
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 154 bits (390), Expect = 1e-50 Identities = 60/165 (36%), Positives = 99/165 (60%), Gaps = 4/165 (2%) Query: 4 IAVYAGSFDPLTNGHLWMIRQGARMFDELIVAMGDNPDKRYTFSHEERMDMLRVALSDMP 63 A+Y GSFDP+T GHL +I +G R+FD++ VA+ NP+K+ FS +ER++ + A++ +P Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 DVRIAEFHNRFLVDFANEHGATFMLRGIRSTQDYEYERVMRHINADMAPKVCTVFLMPPR 123 + ++ F V++A + A +LRG+R D+E E M + N +A + TVFL Sbjct: 62 NAQVDSFEG-LTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTST 120 Query: 124 DTAELSSSMVKGLIGPEGWEGQVSRYVPHNVFAMLKEKYREVFPR 168 + + LSSS+VK + + G V +VP +V A L +++ V R Sbjct: 121 EYSFLSSSLVKEVA---RFGGNVEHFVPSHVAAALYDQFHPVVER 162
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 29.6 bits (66), Expect = 0.044 Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 82 SRWMKPAEWLWHTCVALGLATIAAG 106 S W+KP +WL H AL A ++AG Sbjct: 51 SAWIKPGDWLEHVSPALAGAAVSAG 75
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 92.4 bits (230), Expect = 2e-28 Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 2/88 (2%) Query: 2 NKAQLIELIQSKLGADTTKKHAEEALAAVLESIKEGVKESGKVQIIGFGTFATKTREART 61 NK LI + + TKK + A+ AV ++ + + KVQ+IGFG F + R AR Sbjct: 3 NKQDLIAKVAEA--TELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARK 60 Query: 62 GRNPKTGNTINIPASKTVAFKASSALKD 89 GRNP+TG I I ASK AFKA ALKD Sbjct: 61 GRNPQTGEEIKIKASKVPAFKAGKALKD 88
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 63.0 bits (153), Expect = 1e-13 Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 14/182 (7%) Query: 41 VNPKRVAVLDYGSLETIGELGVTPA----LALPKKFL--PPYLSKFSGEQYTDLGTVKEF 94 ++P R+ L++ +E + LG+ P + ++ PP + D+G E Sbjct: 33 IDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPL-----PDSVIDVGLRTEP 87 Query: 95 NIETINAFKPDLIIISGRQQDYYQKLSSIAPVYLVD-TLAKDQLGEAKKNIRLLGDVFGV 153 N+E + KP ++ S + L+ IAP + + K L A+K++ + D+ + Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 154 PEKAAEAVKNIDEAVTRTKDKAQASGKKALVL--LTNDGKVSAYGSGSRFGLVHDALGVA 211 A + ++ + K + G + L+L L + + +G S F + D G+ Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 212 QA 213 A Sbjct: 208 NA 209
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 28.4 bits (63), Expect = 0.050 Identities = 9/44 (20%), Positives = 16/44 (36%) Query: 269 FDCSTRRFWEPEFEGSRLNLAGWTRKLTGKPTISVGSVGLKGDF 312 FD T R +P+ + + + G + + G GD Sbjct: 297 FDADTIRIAQPKSATAIFDTTTLNPTIAGAGDVKASAEGQLGDT 340
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.1 bits (70), Expect = 0.012 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 108 ALLAEYGAEIFKLSAEMGTPIYFEASAGGGIPIIQ--SLQNSLICNHINSIVGIINGTSN 165 +LLA + E + A + T AS GI SL + + + ++ GII+G Sbjct: 352 SLLAAFHKETGAIDASLTTISTVLASVSSGISAAATTSLVGAPVSALVGAVTGIISGILE 411 Query: 166 YILSAMGEHGA-DYADALAQAQKLGFAEEDPSLDVNGWDAAHKALI 210 AM EH A AD +A+ +K + + NG+DA H A + Sbjct: 412 ASKQAMFEHVASKMADVIAEWEK----KHGKNYFENGYDARHAAFL 453
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 36.3 bits (84), Expect = 2e-04 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 8/100 (8%) Query: 112 RIHSIDPTLMNKYLQEGNILICAGFQGV---TEEGMVQTL-GRGGSDLSAIAIAAALKAD 167 + + K ++ G I+I +G GV E+G ++ + DL+ +A + AD Sbjct: 172 GHVEAET--IKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNAD 229 Query: 168 VCQIFTDVDGVYTCDPRVVKDAKKIQTLSYDEMLEMASNG 207 + I TDV+G + + ++ + +E+ + G Sbjct: 230 IFMILTDVNGAALYYGT--EKEQWLREVKVEELRKYYEEG 267
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 31.6 bits (71), Expect = 0.026 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 820 AVLTADELAVVNGAAHIESIPWLNKKDLPVFDCAA--TNGNGIRAISPAGHVLMLGALQP 877 A +T A+V+G HI ++ L +DLP TN + A V +LGA + Sbjct: 169 ANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASEL 228 Query: 878 FISG 881 + G Sbjct: 229 TLDG 232
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 41.3 bits (96), Expect = 5e-06 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Query: 149 RLLDILHYLHSMGVYHCDIKPSN-IFIQPDGTPKLIDFGAVRTKTLQHQGLVQITPGYTP 207 RLLD+ ++L GV H DIKP N +F + G P +ID G Q +G T + Sbjct: 253 RLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPKGF---TESFKA 309 Query: 208 PEFYPG 213 PE G Sbjct: 310 PELGVG 315
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 313 bits (803), Expect = e-107 Identities = 109/362 (30%), Positives = 176/362 (48%), Gaps = 15/362 (4%) Query: 9 AWAEIDLGAIRHNLNVVKQAAKGEYYMPVVKAGAYGHGLEQVCRTLDSEGIAFFGVANVG 68 A +DL A++ NL++V+QAA VVKA AYGHG+E++ + + F + N+ Sbjct: 5 IQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDG--FALLNLE 62 Query: 69 EARRISQAGCRTRPYILGPAF-PEEREEIVLNGWRSFISTMEEAAHYNSLARLYGKTLPI 127 EA + + G + +L F ++ E + + + + + + L I Sbjct: 63 EAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARL--KAPLDI 120 Query: 128 HLSVDTGMGRGGFLPDQLEELLSRLGELDSLHLEGLGAHLPCADEDREITLRQISRFEQM 187 +L V++GM R GF PD++ + +L + ++ L +H A+ + ++R EQ Sbjct: 121 YLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHP-DGISGAMARIEQA 179 Query: 188 AARIREKLPLKYCHLANSAASLDYEIPSNNMCRPGLVLYGFSPIPS---PWAVQLKPAMA 244 E L + L+NSAA+L + + RPG++LYG SP L+P M Sbjct: 180 ----AEGLECRR-SLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMT 234 Query: 245 LFSRLTVVRTLPEGHGISYGGTFVTDHPTRVATVGIGYADGYLRSLAHKGARVMVDGVSC 304 L S + V+TL G + YGG + R+ V GYADGY R G V+VDGV Sbjct: 235 LSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAP-TGTPVLVDGVRT 293 Query: 305 PLLGRVTMDQIMVDVSRMPHAEPGMTAEIMGPHIPVTELAEKAGTISWEIFTGIGPRVPR 364 +G V+MD + VD++ P A G E+ G I + ++A AGT+ +E+ + RVP Sbjct: 294 MTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPV 353 Query: 365 HY 366 Sbjct: 354 VT 355
>PF05844#YopD protein Length = 295 Score = 31.5 bits (71), Expect = 0.007 Identities = 6/35 (17%), Positives = 14/35 (40%) Query: 266 AQAVASQVSSGVTSLMGSFSSAMQPQITKSYAAGD 300 A AV + V + ++++GS + + Sbjct: 122 AMAVIAGVGALASAVVGSLGALKNGKAISQEKTLQ 156
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 35.7 bits (82), Expect = 2e-04 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%) Query: 42 AQLGAGYATKYISRGLAFQNSASDHVIPLEAVGA-YQLNNQYSLIGGLKYQWLTDNGLEH 100 +LG + ++ + + V P+ A G Y + + + L+YQW + G H Sbjct: 116 TRLGGMVW-RADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIAT--RLEYQWTNNIGDAH 172 Query: 101 NDSGICDEGSAILGVSRKFGKSTVAA 126 D G LGVS +FG+ A Sbjct: 173 TIGTRPDNGMLSLGVSYRFGQGEAAP 198
>PF07132#Harpin protein (HrpN) Length = 356 Score = 30.0 bits (67), Expect = 0.022 Identities = 23/47 (48%), Positives = 25/47 (53%), Gaps = 5/47 (10%) Query: 431 MGAMMKQMASMKGKGGKMPGLPGMGGGLGGLKGLGGLGGGLGGLFGG 477 MG+MM G GG + GL GGLGG GGLGGGLG G Sbjct: 61 MGSMM-----GGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGS 102 Score = 30.0 bits (67), Expect = 0.023 Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 4/40 (10%) Query: 438 MASMKGKGGKMPGLPGMGGGLGGLKGLGGLGGGLGGLFGG 477 M +M G M G G+GGGLGGL LGG GGL GG Sbjct: 55 MTTMMFMGSMMGG--GLGGGLGGL--GSSLGGLGGGLLGG 90
>PF01540#Adhesin lipoprotein Length = 475 Score = 31.2 bits (70), Expect = 0.013 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%) Query: 105 PEVVGKLKENVENRLNKKTKLDAEEVRMTLGFQLMDAYEKIDLNAQELSR-EGKTEEAAG 163 P ++ KL VEN +++ K+D ++ D KI A+EL + K + A Sbjct: 89 PAIISKLSAAVENAKSEQQKVDQANK------KIADENLKIKEGAKELLKLSEKIQSFA- 141 Query: 164 QESIAAQLKTAAGRLYSKEITARIQGLQFVNTMQQKST-MATFA 206 ++IA + G+ + + T + Q + + + +KS + TFA Sbjct: 142 -DTIALTITKLEGKKFQIDETFKKQLISTIELLNKKSAEVKTFA 184
>PF06580#Sensor histidine kinase Length = 349 Score = 34.1 bits (78), Expect = 0.001 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 19/73 (26%) Query: 403 ILVSVTDNGPGVPKDLHEKIFRPNFTTKKKGLSFGLGLGLTIVR-RIVDSYGG--RIRLE 459 + + V + G K+ E G GL VR R+ YG +I+L Sbjct: 292 VTLEVENTGSLALKNTKE----------------STGTGLQNVRERLQMLYGTEAQIKLS 335 Query: 460 SVPGHTVFTIVIP 472 G ++IP Sbjct: 336 EKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.7 bits (168), Expect = 2e-16 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 10/131 (7%) Query: 1 MEKINIICVDDQPEVLDSVLRDLRPLNSCFRLEGVESASECRELLEEFDQDGELTGLIIS 60 M I+ DD + + + L + + +A+ + D D L+++ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGD-----LVVT 53 Query: 61 DHVMPGGSGVELLGGIAKDDRFAGTRKILLTGQATHADTIQAVNDAHIDNYLEKPWDPAV 120 D VMP + +LL I K ++++ Q T T ++ +YL KP+D Sbjct: 54 DVVMPDENAFDLLPRIKKAR--PDLPVLVMSAQNT-FMTAIKASEKGAYDYLPKPFDLTE 110 Query: 121 LLATARKLLTR 131 L+ + L Sbjct: 111 LIGIIGRALAE 121
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 64.3 bits (157), Expect = 2e-17 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 2 NKTQFIRELQRELGNDVTSRQAEHALNAVLETIARSVRRRSLVKFRGFGTFRVKRRRARI 61 NK I ++ ++T + + A++AV ++ + + V+ GFG F V+ R AR Sbjct: 3 NKQDLIAKVAEA--TELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARK 60 Query: 62 VRHPENGGRLLVHESKTMKFRPSSLL 87 R+P+ G + + SK F+ L Sbjct: 61 GRNPQTGEEIKIKASKVPAFKAGKAL 86
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 26.6 bits (58), Expect = 0.020 Identities = 14/44 (31%), Positives = 19/44 (43%) Query: 50 PWAPAPAQQEILPEDENEESAPGPAVLPGDFRPGLRTPRLPETL 93 P+ P Q + D P DFRPGL+ +L +TL Sbjct: 171 PYKEKPIQNQAKSVDVEYTVQFTPLNPDDDFRPGLKDTKLLKTL 214
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 31.3 bits (71), Expect = 0.003 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 2 SNFRILILAFLVVVLAVLGMIYVNISSRMDVIQQQQQMASAPAPVNPSPYLPMPTQAPAS 61 + V ++ V +++V + R +Q ++M + S Y+P+ + + Sbjct: 217 GGWIEFGTVIAVGLIMVALVVFVEQAQRRIPVQYAKRMIGRRSYGGTSTYIPL--KVNQA 274 Query: 62 AVQPVVVA 69 V PV+ A Sbjct: 275 GVIPVIFA 282
>PF07472#Fucose-binding lectin II Length = 245 Score = 25.4 bits (55), Expect = 0.037 Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 20/65 (30%) Query: 23 SCTTDSYGNSSVTPGGAAAIGVGALAAGAAIGAAVQHDRDKDRYRNDWRHHNPPPPPPRP 82 +CT G V PG AA GVGA+ ++ P P P Sbjct: 83 ACTVTWAGAPGVLPGAAAKFGVGAVV--------------------NYFSKATPQPEPTQ 122 Query: 83 PHRPQ 87 P Sbjct: 123 PGTTT 127
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.9 bits (116), Expect = 2e-09 Identities = 19/152 (12%), Positives = 54/152 (35%), Gaps = 12/152 (7%) Query: 2 PKRKSTREHLLNTGAMIVGESGLRALTVRGLSLRAGTNTGSFVYHFGNREAFLTELLERW 61 + + TR+H+L+ + + G+ + ++ ++ AG G+ +HF ++ +E+ E Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 62 YEPLFTGIRTHANIHLPAFEKLEAILGDVMEFLL--------RHGQFIAQLVLDALAGEQ 113 + ++L +++ +L R GE Sbjct: 67 ESNI---GELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 114 AAI-RFISGIHTRHPLVLLETIREAQQEGSVL 144 A + + + + +T++ + + Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLP 155
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 569 bits (1468), Expect = 0.0 Identities = 233/1066 (21%), Positives = 437/1066 (40%), Gaps = 72/1066 (6%) Query: 7 FCLNNRITVILLTIALAIISIFVVKNIPVDVFPELKVPRVTIQTEAPGLTAEEVEQYITI 66 F + I +L I L + + +PV +P + P V++ PG A+ V+ +T Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63 Query: 67 PIESAMNGTAGVKGVRSSSGS-GLSFVWVDFDWNKDIYQARQIVTERLGAVRESLPEGTS 125 IE MNG + + S+S S G + + F D A+ V +L LP+ Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123 Query: 126 PELAPIVSITGE-IMLIALTGD-KDTSQLDMRQLAEYKLRTRLLAIPGVGQVTVLGGRLP 183 + + + +M+ D T+Q D+ ++ L + GVG V + G + Sbjct: 124 QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY- 182 Query: 184 EYQVIYDPNKLKLAGVDLSSLKTAIQESQSSVPAGYLED---VAGQEL--PIQQDTRTAN 238 ++ D + L + + ++ + AG L + GQ+L I TR N Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 239 IEQLNRALVPDHASG-ILRLQDVAEVKIDGAPRRGDAGFMGEDAVVLSVQKVPGANTLAL 297 E+ + + ++ G ++RL+DVA V++ G A G+ A L ++ GAN L Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 298 TQAVDAAVREFSQSQLPKGMKLHTAAYRQADFIEMSLDNGTETLLIAGAVVMIVIFLTLL 357 +A+ A + E P+GMK+ Y F+++S+ +TL A +V +V++L L Sbjct: 303 AKAIKAKLAELQPF-FPQGMKV-LYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 358 NLRTAIITLISMPLSILFGLMMFPVFGLAINIMTLGGLAVAVGDVVDNAIIFVEIAWRHL 417 N+R +I I++P+ +L + FG +IN +T+ G+ +A+G +VD+AI+ VE R + Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 418 NRNAALPKDKRKSKYEVLMKAKSEIVGSISFSSVIILLVFTPVLFLSGLEGQFFRPLGIS 477 + PK E K+ S+I G++ ++++ VF P+ F G G +R I+ Sbjct: 421 MEDKLPPK-------EATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSIT 473 Query: 478 YMLALLSSLIVAVTITPVLCYIWFKKSKN---------AATLESGDSFSSRLIKRIYAPI 528 + A+ S++VA+ +TP LC K + S I Sbjct: 474 IVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKI 533 Query: 529 LEFCLRFSKTVCAIMTAITLLALWLGSTFGTSFLPPFNEDCYTVFVSTVPGTSLDETERI 588 L R+ I+ + L +SFLP ++ + + G + + T+++ Sbjct: 534 LGSTGRYLLIYALIV----AGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKV 589 Query: 589 SRKVMKDI--EQIPGVLSVTQRTGRAENDEHAEPVSASELLV-------RVDLKKDQKEL 639 +V + V SV G + + + +A V R + + + Sbjct: 590 LDQVTDYYLKNEKANVESVFTVNGFSFSG---QAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 640 RAAIKKCIDGIPGTSSMIGYPLAHRISSALSGSNSEIAINIYGTELPQLRLAARK--AKE 697 K + I + I + + + + AR Sbjct: 647 IHRAKMELGKIRDGFVIPFNMP--AIVELGTATGFDFELIDQAGLGHDALTQARNQLLGM 704 Query: 698 ILENMPEVADARANREIMVDTIRVQYNQEALASYGLTMANAAEQVSTAMNGQKLGEVIKN 757 ++ + R N +++ +QE + G+++++ + +STA+ G + + I Sbjct: 705 AAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDR 764 Query: 758 QDHWNIVLRIDPRLKTSMEDVKNLELISPNKKTVRLDDVAQVYREEVSNLILRDNTMRKA 817 + ++ D + + EDV L + S N + V + S + R N + Sbjct: 765 GRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSM 824 Query: 818 MISCNPSPNSNLGD---LAKACREQLDPVMNAMGCTVDYDGTIKARESASQRLYVLGAIV 874 I +P ++ GD L + +L G D+ G + + L AI Sbjct: 825 EIQGEAAPGTSSGDAMALMENLASKLPA-----GIGYDWTGMSYQERLSGNQAPALVAIS 879 Query: 875 MVLIVLLLSSALGSVRRAMLTLVNIPLCLVGGIVAVFLASPGTLSSLFGGTYIPPILSVA 934 V++ L L++ S + ++ +PL +VG ++A L V Sbjct: 880 FVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLF---------NQK-----NDVY 925 Query: 935 SIVGFVTVIGFAIRSGLILLNRYR-ALEHQGMEPAEAIREGSLERVVPIIMTSLTTVLGL 993 +VG +T IG + ++ ++++ + +E +G EA R+ PI+MTSL +LG+ Sbjct: 926 FMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGV 985 Query: 994 LPLIWAIDQPGGELLGPLAIVQFGGLVTATILNLLIIPATAKLFSR 1039 LPL + G + I GG+V+AT+L + +P + R Sbjct: 986 LPLAISNG-AGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030 Score = 96.8 bits (241), Expect = 2e-22 Identities = 91/551 (16%), Positives = 195/551 (35%), Gaps = 72/551 (13%) Query: 528 ILEFCLRFSKTVCAIMTAITLLALWLGSTFGTSFLPPFNEDCYTVFVSTVPGTSLDETE- 586 + F +R + + + + P +V + PG + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVS-ANYPGADAQTVQD 59 Query: 587 RISRKVMKDIEQIPGVLSVTQRTGRAENDEHAEPVSASELLVR----VDLKKDQKELRAA 642 +++ + +++ I ++ ++ + A + + + D Q +++ Sbjct: 60 TVTQVIEQNMNGIDNLMYMSSTSDSAGS---------VTITLTFQSGTDPDIAQVQVQNK 110 Query: 643 IKKCIDGIP----------GTSSMIGYPLAHRISSALSGSNSEIAINIYGTELPQLRLAA 692 ++ +P SS +A +S + +I+ A Sbjct: 111 LQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDIS-----------DYVA 159 Query: 693 RKAKEILENMPEVADAR---ANREIMVDTIRVQYNQEALASYGLTMANAAEQVSTAMN-- 747 K+ L + V D + A + R+ + + L Y LT + Q+ + Sbjct: 160 SNVKDTLSRLNGVGDVQLFGAQYAM-----RIWLDADLLNKYKLTPVDVINQLKVQNDQI 214 Query: 748 --GQKLGEVIKNQDHWNIVLRIDPRLKTSMEDVKNLELISPNKKTVRLDDVAQVYR-EEV 804 GQ G N + R K E K ++ + VRL DVA+V E Sbjct: 215 AAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 805 SNLILRDNTMRKAMISCNPSPNSNLGDLAKACRE---QLDPVM-NAMGCTVDYDGTIKAR 860 N+I R N A + + +N D AKA + +L P M YD T + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 861 ESASQRLYVL-GAIVMVLIVLLLSSALGSVRRAMLTLVNIPLCLVGGIVAVFLASPGTLS 919 S + + L AI++V +V+ L L ++R ++ + +P+ L+G + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLF--LQNMRATLIPTIAVPVVLLGTFAILAA------- 385 Query: 920 SLFGGTYIPPILSVASIVGFVTVIGFAIRSGLILL-NRYRALEHQGMEPAEAIREGSLER 978 FG + ++ ++ G V IG + ++++ N R + + P EA + + Sbjct: 386 --FGYS-----INTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQI 438 Query: 979 VVPIIMTSLTTVLGLLPLIWAIDQPGGELLGPLAIVQFGGLVTATILNLLIIPATAKLFS 1038 ++ ++ +P + G + +I + + ++ L++ PA Sbjct: 439 QGALVGIAMVLSAVFIP-MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 1039 RWIASRRKELK 1049 + +++ E K Sbjct: 498 KPVSAEHHENK 508
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.002 Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 10/94 (10%) Query: 167 VKSAQQVRKGELLYTLASPDIVEMEGNASQARAALDRAAAELGTLRERRAQLEKIGTRNS 226 VK + VRKG++L L + E + + +++L +A E + +E Sbjct: 112 VKEGESVRKGDVLLKL---TALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPEL 168 Query: 227 ELNTSI-------QFKEAEIHSLRAALNASNNKL 253 +L + ++ + N+ Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQK 202
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.1 bits (62), Expect = 0.031 Identities = 13/34 (38%), Positives = 15/34 (44%) Query: 106 PEAAKARKTASARATMIPFFTALILLGMLAAGLL 139 P R+ S T PFFTA L M AG+ Sbjct: 497 PMKETKRQLPSTGETANPFFTAAALTVMATAGVA 530
>PF03627#PapG Length = 336 Score = 28.0 bits (62), Expect = 0.033 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Query: 52 FSMSLRGNLIAFQ----YQLNNV--WNRFDLKFKDRGQEILSWKDGKAGV 95 FS+ + G A+ Y L NV + ++ R Q I SW+ G A V Sbjct: 10 FSLCVSGESSAWNNIVFYSLGNVNSYQGGNVVITQRPQFITSWRPGIATV 59
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 231 bits (590), Expect = 2e-71 Identities = 94/311 (30%), Positives = 156/311 (50%), Gaps = 16/311 (5%) Query: 480 LNLFKKKTNIDFMSQKIWSCSLSAILLMICIVFGAVKGKDCLGMDFTGGSSISYLVNKG- 538 L L +KTN DF + + + ++++ ++ V G + G+DF GG++I Sbjct: 5 LKLVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLN-FGIDFKGGTTIRTESTTAI 63 Query: 539 --DISFREVEGVVNKLSLTQKATVQEVAESTDSSKVNILINFSDHAQDKEA--------- 587 + +E + + + E + + I + + + Sbjct: 64 DVGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNK 123 Query: 588 ITTALDKAFPVLDNAPFSEETIGQSMGYDTLITSAWALFFGILGIMVYLTVRFEWTFAIG 647 + TAL P L F E++G + + + T+ W+L + IM Y+ VRFEW FA+G Sbjct: 124 VETALTAVDPALKITSF--ESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALG 181 Query: 648 AVIALTHDVLLVLGLVIVSGTELNVIHIGALLTVAGYSINDKIIVFDRIREFLRFSDPNE 707 AV+AL HDVLL +GL V + ++ + ALLT+ GYSIND ++VFDR+RE L Sbjct: 182 AVVALVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLI-KYKTM 240 Query: 708 SASQIMNEAINQTLSRTILTSLSTLAVLVCLYFFGGPSMEDFAWTISAGILIGTYSSIFI 767 +MN ++N+TLSRT++T ++TL LV + +GG + F + + G+ GTYSS+++ Sbjct: 241 PLRDVMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYV 300 Query: 768 ASPAALFFSRK 778 A LF Sbjct: 301 AKNIVLFIGLD 311 Score = 78.0 bits (192), Expect = 1e-17 Identities = 31/174 (17%), Positives = 75/174 (43%), Gaps = 3/174 (1%) Query: 297 KLNFESASEISASLGHTALLQGEYAGITGLILCFIMMIIYYRFA-GLVAIMGLTINALLL 355 L S + + + ++ + ++ + + + + L A++ L + LL Sbjct: 134 ALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLT 193 Query: 356 LGAMSIFGFELTLPGIAGIVLTLGVAVDSNVLIYERLRE--EKEMGRPFRVAIRNSFDKA 413 +G ++ + L +A ++ G +++ V++++RLRE K P R + S ++ Sbjct: 194 VGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNET 253 Query: 414 FSAIFDSNITSLITAVILYWMATGTIKGFAVTLTVGVITSMIGAILVTRVLFYW 467 S + +T+L+ V + I+GF + GV T ++ V + + + Sbjct: 254 LSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLF 307
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.9 bits (69), Expect = 0.008 Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 16/157 (10%) Query: 61 VQMKRIDPGIMIVGEELVLAKYDTDKDGKLSDEEIAVLQADVKKAQEARKAAILKKFDKD 120 +Q K + +M E + A D L +++ V D K+ +E +KA +K K+ Sbjct: 97 IQPKSVKSNLMFEKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKE 156 Query: 121 GDGKLSKEERKAMQEEWLKDHPEAAKRMEEMKARQEARKAEILKKYDKDGDGKLSDEEKK 180 K K++R+ +EE K+ M Q + L + K Sbjct: 157 QAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQ----------- 205 Query: 181 AMREDWAKNHPEAAKRMEEMKARQEAHAAAMIKKFDK 217 RE N + +R+E+M+ + +A+A I++ +K Sbjct: 206 -QRE----NELDQMERLEDMQEQAQANALKQIEELNK 237
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 51.0 bits (122), Expect = 1e-09 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 4/79 (5%) Query: 170 REAMGSGDAWILMMAGCACGWQGALFSLFLGSLLGIVQAAASRM----GFGRNLPFGPAL 225 +E MG GD +L G GWQ L L SL+G + + +PFGP L Sbjct: 208 KEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRNHHQSKPIPFGPYL 267 Query: 226 LSAALIWLLGGSQWWQAYI 244 A I LL G + Y+ Sbjct: 268 AIAGWIALLWGDSITRWYL 286
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.4 bits (66), Expect = 0.029 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 150 MNTAVPGDFHEETSRDQMKRLGIDLPPLVTPDVPGTTRMRTLLEWMREGQNG 201 +N A+PGD + T+ + L L+T R LL+WM + + Sbjct: 165 LNEALPGDARDTTT---PASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVA 213
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 29.2 bits (65), Expect = 0.025 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Query: 292 GGPLLNLKGELIGMNIARVNRAENYALPISVVQKSVQNILKN 333 G P+ N K E+IG++ V N A+ + ++V+N LK Sbjct: 238 GSPVFNEKNEVIGIHWGGVPNEFNGAV---FINENVRNFLKQ 276
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 54.6 bits (131), Expect = 7e-11 Identities = 35/154 (22%), Positives = 54/154 (35%), Gaps = 19/154 (12%) Query: 71 GSGSGILVSEKGLVFSAAHVVD---KKGTTLKIIL--------PDGTRLPGKTTAQNSNS 119 SG++V K + + HVVD LK P+G + T + Sbjct: 102 FIASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEG 160 Query: 120 DAGMAKITSQLNKKL------PCVEKAEKMPRVGDWVFALGHGGGLDRKRGPMVRLGRVV 173 D + K + K P +V + G+ G G++ Sbjct: 161 DLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP-VATMWESKGKIT 219 Query: 174 SLKNGVIQTDCKLIRGDSGGPLFNLDGKLIGIHS 207 LK +Q D G+SG P+FN ++IGIH Sbjct: 220 YLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHW 253
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 30.6 bits (69), Expect = 0.007 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 26/108 (24%) Query: 106 EAAEERQLRPMHSPLVPLVRQFPSHAGHARREYSTQIIGN--------IAAGSLAESDTV 157 E ++ +Q + L+ + P + + +II + + L E V Sbjct: 351 EPSKPQQREMLLDALLEISDSDPLLR-YYVDSATHEIILSFLGKVQMEVTCALLQEKYHV 409 Query: 158 ------PSTIYMERPLGKNEYVVRVE----------GKSMEPLIPDGS 189 P+ IYMERPL K EY + +E G S+ PL P GS Sbjct: 410 EIEIKEPTVIYMERPLKKAEYTIHIEVPPNPFWASIGLSVSPL-PLGS 456