PredictBias

		>BINARYTOXINA#Clostridial binary toxin A signature.

		          Length = 454

		

		 Score = 73.9 bits (181), Expect = 4e-16

		 Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 18/191 (9%)

		

		Query: 429 ESEKWGIDGFSVWRNSLSSREIQAIRDYTDIWHYGNMNGYLR--GSVEKLAPDNAERIKN 486

		           + + WG + +S W N L+  E+  + DY     Y  +N YL   G +    P+   ++ N

		Sbjct: 260 KGDLWGKENYSDWSNKLTPNELADVNDYMR-GGYTAINNYLISNGPLNNPNPELDSKVNN 318

		

		Query: 487 LSSALEKAELPDNIILYRGTSSEILD--------NFLDLKNLN--YQNLVGKTIEEKGFM 536

		           + +AL+   +P N+I+YR +  +           +F  ++N++   +   GK I    F+

		Sbjct: 319 IENALKLTPIPSNLIVYRRSGPQEFGLTLTSPEYDFNKIENIDAFKEKWEGKVITYPNFI 378

		

		Query: 537 STT--TISNQTFSGN-VTMKINAPKGSKGAYLAHFSETPEEAEVLFNIGQKMLIKEVTEL 593

		           ST+  +++   F+   + ++IN PK S GAYL+       E EVL N G K  I +V   

		Sbjct: 379 STSIGSVNMSAFAKRKIILRINIPKDSPGAYLSAIPGYAGEYEVLLNHGSKFKINKVDSY 438

		

		Query: 594 -NGKI-EIIVD 602

		            +G + ++I+D

		Sbjct: 439 KDGTVTKLILD 449

		

		

		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

		           family signature.

		          Length = 354

		

		 Score = 28.2 bits (63), Expect = 0.030

		 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 21/90 (23%)

		

		Query: 62  LVLLALLCYIILYPQKMTIRFQNLQYLLYICCFQFLVFMVIRYFYSNLIYGIQNMVSLTA 121

		           +VLL++L +II+                        +  +++     +      +  +  

		Sbjct: 147 VVLLSILIWIIIKG---------------------NLVTLLQLPTCGIECITPLLGQILR 185

		

		Query: 122 QTLVASYVFLLVLWILALIFFYFHFRKKLR 151

		           Q +V   V  +V+ I    F Y+ + K+L+

		Sbjct: 186 QLMVICTVGFVVISIADYAFEYYQYIKELK 215

		

		

		>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP

		           signature.

		          Length = 245

		

		 Score = 32.5 bits (74), Expect = 0.004

		 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

		

		Query: 134 IRVVNYINMLSDLLSNGLINLISDILSVIVTLGFM------LMIDPVLTLYSLALIPVLF 187

		           ++ + +I  L+      ++ +++    +I+  G +          P   L  LAL    F

		Sbjct: 42  VQTLVFITSLT--FIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFF 99

		

		Query: 188 VIVMVIKTAQRKAYQVLSNKQSNMNAYIHESIAGIKVTQSFSREEENFEIFTEVSNE 244

		           ++  VI      AYQ  S ++ +M   + +    ++        E +  +F  ++N 

		Sbjct: 100 IMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANT 156

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 29.9 bits (67), Expect = 9e-04

		 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

		

		Query: 1   MEYKNGENR-IYAVNDEGVEVGEVTFVPTGEDMFIIDHTGVDDAARGQGIAQELVKRAVE 59

		           + Y   E +  +    E   +G +          +I+   V    R +G+   L+ +A+E

		Sbjct: 57  VSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIE 116

		

		Query: 60  KAKSEG 65

		            AK   

		Sbjct: 117 WAKENH 122

		

		

		>TONBPROTEIN#Gram-negative bacterial tonB protein signature.

		          Length = 239

		

		 Score = 43.8 bits (103), Expect = 1e-06

		 Identities = 20/88 (22%), Positives = 24/88 (27%), Gaps = 8/88 (9%)

		

		Query: 673 TTPVSFEIVAGETDPIVKVTKENTLVPPTPVPPTPVPPTPVPPTPVPPTPLPPVPYEPTV 732

		             P+S  +V                    P P   V P P P     P    PV  E   

		Sbjct: 42  AQPISVTMVTPADLE--------PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 93

		

		Query: 733 PPTKPEVPVTPKKTENSEDSPKTTPIRI 760

		           P  KP+     K  E  +   K    R 

		Sbjct: 94  PKPKPKPKPVKKVQEQPKRDVKPVESRP 121

		

		

		>PF05043#Transcriptional activator

		          Length = 493

		

		 Score = 49.6 bits (118), Expect = 2e-08

		 Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 15/231 (6%)

		

		Query: 4   SERQRSLLEKLNDSQKTVTAKALSEMLGVSSKTVRNDIMQINQSFSSTIIASKAGKGYFL 63

		           S RQ  LLE L + ++      L+E+L  + + V++D+  +  +F   I  S       +

		Sbjct: 9   SHRQLELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNGIRII 68

		

		Query: 64  MPNEQLSQMNLTK-NNENLHFELLRHIIEQDHTNFYDLADQFFISESTLARIIKELNIVI 122

		             ++   +M        + HF +L  I   +      +  +F+IS S+L RII ++N VI

		Sbjct: 69  NTDDSDIEMVYHHFFKHSTHFSILEFIFFNEGCQAESICKEFYISSSSLYRIISQINKVI 128

		

		Query: 123 AEKDESLCIIRKNNELLTEGGEEEKRRIFNLFLNQEIENHQLSLDKYADYFDYCNLKQLS 182

		             + +    +          G E   R F      E    +    ++   F+  + + LS

		Sbjct: 129 KRQFQFEVSLTPV----QIIGNERDIRYFFAQYFSE----KYYFLEWP--FENFSSEPLS 178

		

		Query: 183 ELIIAYHKKHEFFMNDFSTISFILHIAVLIERISMGSYIERTALLEQDKTS 233

		           +L+   +K+  F MN  +     L +   + RI  G ++E    +++D  +

		Sbjct: 179 QLLELVYKETSFPMNLSTHRMLKLLLVTNLYRIKFGHFME----VDKDSFN 225

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 29.8 bits (67), Expect = 0.025

		 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

		

		Query: 31  DYYLHEAGLENGDVASDHYHRYEEDIRMMKEGGQNSYRFSLSWPRIIKNRQGDINLKGIE 90

		            +  H+  L + +  +D +     + R+     + + R+SL  P        D NL G  

		Sbjct: 53  GFQFHKIDLADREGMTDLFASGHFE-RVFISPHRLAVRYSLENPHAYA----DSNLTG-- 105

		

		Query: 91  FYQNLLDTCKKYDIEPFV 108

		            + N+L+ C+   I+  +

		Sbjct: 106 -FLNILEGCRHNKIQHLL 122

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 30.0 bits (67), Expect = 0.016

		 Identities = 17/89 (19%), Positives = 25/89 (28%)

		

		Query: 253 HNEKKRMELHFRKLEKQKLELEKKNKELISENYNLDLEIKNKHTVIEKLSKNKMEVEANK 312

		            N         + LE +K  L  +  +L                 I+ L   K  +EA +

		Sbjct: 133 MNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQ 192

		

		Query: 313 ELLKICKIENGNLIKKVSALNFELVKMKE 341

		             L+       N     SA    L   K 

		Sbjct: 193 AELEKALEGAMNFSTADSAKIKTLEAEKA 221

		

		

		>ALARACEMASE#Alanine racemase signature.

		          Length = 356

		

		 Score = 29.4 bits (66), Expect = 0.011

		 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 7/70 (10%)

		

		Query: 132 GVGPIFPTISKADAEPVSGTAILEE---IRRAGITIPIVGIGGINETNSAEVLTAGADGV 188

		           G+  I+  I   D         LEE   +R  G   PI+ + G       E+        

		Sbjct: 42  GIERIWSAIGATDG---FALLNLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQ-HRLT 97

		

		Query: 189 SVISAITQSD 198

		           + + +  Q  

		Sbjct: 98  TCVHSNWQLK 107

		

		

		>TONBPROTEIN#Gram-negative bacterial tonB protein signature.

		          Length = 239

		

		 Score = 36.1 bits (83), Expect = 1e-04

		 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 9/106 (8%)

		

		Query: 268 PVTPPKNDPEPDNPEEPVTPVDPATPIPDEPSTPTDPATPEKPEITTPENPESTVVEADS 327

		           P   P  +PEP+    P  P +    I      P       KP     E P+  V   +S

		Sbjct: 63  PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP---KPVKKVQEQPKRDVKPVES 119

		

		Query: 328 SENEPEKSADSKIVNNPIQITSQATKTATKQAKSSATKTTLPLPKA 373

		               P ++        P ++TS     AT +  +S       L + 

		Sbjct: 120 RPASPFEN------TAPARLTSSTATAATSKPVTSVASGPRALSRN 159

		

		

		>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature.

		          Length = 1104

		

		 Score = 36.2 bits (83), Expect = 0.002

		 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

		

		Query: 1015 VTVNKDPAPIISA------KTEITYDKFSKKTEAAFLDDIDADTNDGSIVTSNFATAVN- 1067

		            V VNK+P  +I +      + EI +D    K E   +   + D  DG    SN A A + 

		Sbjct: 769  VHVNKEPKAVIKSDSSVIVEEEINFDGTESKDEDGEIKAYEWDFGDGE--KSNEAKATHK 826

		

		Query: 1068 LDKAGDYTVTLNSINSDGVAGTPTAIIVHVEKEKIATISTNTAQQ-YEKYAKINETQFL 1125

		             +K G+Y V L   +++G   T +  I  VE + +  I+ +     +EK  +I ++  L

		Sbjct: 827  YNKTGEYEVKLTVTDNNGGINTESKKIKVVEDKPVEVINESEPNNDFEKANQIAKSNML 885

		

		

		

		 Score = 33.9 bits (77), Expect = 0.007

		 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 21/195 (10%)

		

		Query: 1313 TNFKTAMSYTVTLNAVNEDGISAEPVAVTVTINKEPAAALKADA------EVSYAKNEAV 1366

		             N K   +     + V   G++ +     V +NKEP A +K+D+      E+++   E+ 

		Sbjct: 742  VNHKVDGNGNYVYDVVFH-GMNTDTNT-DVHVNKEPKAVIKSDSSVIVEEEINFDGTESK 799

		

		Query: 1367 TESDFFKDVHLE-GTEAPST-AKATSNFDSVVDRSKTGDYTVTINATNEDGAVSTPIEVI 1424

		             E    K    + G    S  AKAT  ++      KTG+Y V +  T+ +G ++T  + I

		Sbjct: 800  DEDGEIKAYEWDFGDGEKSNEAKATHKYN------KTGEYEVKLTVTDNNGGINTESKKI 853

		

		Query: 1425 VHIEAESAPVITANA-EVKYNKHEQTDERRFL----YDSEAKIDEANVEIKTDFAEKVDI 1479

		              +E +   VI  +     + K  Q  +   L       E   D+   ++      K+ +

		Sbjct: 854  KVVEDKPVEVINESEPNNDFEKANQIAKSNMLVKGTLSEEDYSDKYYFDVAKKGNVKITL 913

		

		Query: 1480 NKVGTYTVTLTATNE 1494

		            N + +  +T T   E

		Sbjct: 914  NNLNSVGITWTLYKE 928

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  135 bits (342), Expect = 4e-41

		 Identities = 83/254 (32%), Positives = 126/254 (49%), Gaps = 12/254 (4%)

		

		Query: 12  ITDKVAVVTGAASGIGKAMAELFSEKGAYVVLLDIKED--VKDVAAKINPSRTL-ALQVD 68

		           I  K+A +TGAA GIG+A+A   + +GA++  +D   +   K V++    +R   A   D

		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65

		

		Query: 69  ITKKENIEKVVAEIKKVYPKIDILANSAGVALLEKAEDLPEEYWDKTMELNLKGSFLMAQ 128

		           +     I+++ A I++    IDIL N AGV        L +E W+ T  +N  G F  ++

		Sbjct: 66  VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125

		

		Query: 129 IIGREMIATGGGKIVNMASQASVIALDKHVAYCASKAAIVSMTQVLAMEWAPYNINVNAI 188

		            + + M+    G IV + S  + +      AY +SKAA V  T+ L +E A YNI  N +

		Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185

		

		Query: 189 SPTVILTELGKKAWAGQVGED---------MKKLIPAGRFGYPEEVAACALFLVSDAASL 239

		           SP    T++    WA + G +          K  IP  +   P ++A   LFLVS  A  

		Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245

		

		Query: 240 ITGENLIIDGGYTI 253

		           IT  NL +DGG T+

		Sbjct: 246 ITMHNLCVDGGATL 259

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 30.0 bits (67), Expect = 0.014

		 Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

		

		Query: 150  TQITVQSNIERIVGGAGEDTV-IARVGEAVVSTVG---ETREHTDVLENPNSISK--KVQ 203

		            T IT  +NI+  V     +   IARV EA V        +     V EN    SK  +  

		Sbjct: 995  TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN 1054

		

		Query: 204  EQGLGDGTAYTILSIDIAEMRIGDNIKAKLDIEKANADMEVAQAAASKRKAEAIALEQEN 263

		            EQ   + TA        A+  +  N +     E A +  E  +   ++ K  A   ++E 

		Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTN---EVAQSGSETKETQTTETKETATVEKEEK 1111

		

		Query: 264  RAAVVAAEAEVPRALSRA 281

		                     EVP+  S+ 

		Sbjct: 1112 AKVETEKTQEVPKVTSQV 1129

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 42.6 bits (100), Expect = 7e-08

		 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

		

		Query: 50  EMVGGVTAKISYGE-LHVSLLSVDPSTQGSGVGTELMAQIERYGRANSCHHISLTTFSYQ 108

		             +G +  + ++     +  ++V    +  GVGT L+ +   + + N    + L T    

		Sbjct: 75  NCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDIN 134

		

		Query: 109 AP--EFYRKCGFTELGRV-----KDFPIKGEEKYFF 137

		                FY K  F  +G V      +FP   E   F+

		Sbjct: 135 ISACHFYAKHHFI-IGAVDTMLYSNFPTANEIAIFW 169

		

		

		>PF08280#M protein trans-acting positive regulator

		          Length = 530

		

		 Score = 32.9 bits (75), Expect = 0.004

		 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 22/157 (14%)

		

		Query: 21  SHLSAQKLSQDLHISERTIRTDIAKLTEFLESHGATITLTRGAGYKIEILDPTVFQAFQA 80

		           S L   ++++   ++   +     +L  F                 + I    +      

		Sbjct: 57  SSLPITEVAEKTGLTFLQLNHYCEELNAFFPDS-----------LSMTIQKRMI----SC 101

		

		Query: 81  EKNKPKNADYF-DLDNPEERVKYEIFLLLSSADYIKLEDLADTIFASRATISNDMKQVRK 139

		           +   P    Y   L      ++   FL+ + +    L D A + F S ++     + +  

		Sbjct: 102 QFTHPSKETYLYQLYASSNVLQLLAFLIKNGSHSRPLTDFARSHFLSNSSAYRMREALIP 161

		

		Query: 140 VIASYDLTLVSKPGSGVKIVGDEEKMRYALTALIASK 176

		           ++ +++L L        KIVG+E ++RY L AL+ SK

		Sbjct: 162 LLRNFELKLSKN-----KIVGEEYRIRY-LIALLYSK 192

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 34.3 bits (78), Expect = 5e-04

		 Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 22/142 (15%)

		

		Query: 121  ENGAFSLSVNELDKAQDAVLSIVIDGQTKEQTLKLALTPAYETKIAEKAEAERV------ 174

		             NG + L   E++K    V +  I      Q    A  P+  +   E A  +        

		Sbjct: 974  VNGRYDLYNPEVEKRNQTVDTTNITTPNNIQ----ADVPSVPSNNEEIARVDEAPVPPPA 1029

		

		Query: 175  -------AAEKAEAERVERERVAAEEKRAADAKIAAEKKAEEAR--VAAEKKAAEEKRVA 225

		                       AE  + E + V   E+ A +      + A+EA+  V A  +  E  +  

		Sbjct: 1030 PATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089

		

		Query: 226  AERSKA---AAAQPDTSNEQGQ 244

		            +E  +       +  T  ++ +

		Sbjct: 1090 SETKETQTTETKETATVEKEEK 1111

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 94.7 bits (235), Expect = 2e-25

		 Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

		

		Query: 3   IKNKVIIITGASSGIGKATALLLAEKGAKLVLAARRVEKLEKIVQTIKANSGEAIFAKTD 62

		           I+ K+  ITGA+ GIG+A A  LA +GA +       EKLEK+V ++KA +  A     D

		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65

		

		Query: 63  VTKREDNKKLVELAIERYGKVDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNGIA 122

		           V       ++        G +D +   AG++    + +L ++EWE    +N  GV N   

		Sbjct: 66  VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125

		

		Query: 123 AVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWAVRDLMEVLRMESAQEGTNIRTV 182

		           +V    + ++SG I+   S          A Y ++K A     + L +E A    NIR  

		Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA--EYNIRCN 183

		

		Query: 183 TIYPAAINTELLETI--TDKETEQGMTSLYKQY--GITPDRIA 221

		            + P +  T++  ++   +   EQ +    + +  GI   ++A

		Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLA 226

		

		

		>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature.

		          Length = 1104

		

		 Score = 34.3 bits (78), Expect = 0.007

		 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 12/109 (11%)

		

		Query: 1594 NKPGKYEVTITATDTKGNQTTKEITVQVSKDKPV---ITADPKISYQGKIEVTEANFLSG 1650

		            NK G+YEV +T TD  G   T+   ++V +DKPV     ++P   ++   ++ ++N L  

		Sbjct: 828  NKTGEYEVKLTVTDNNGGINTESKKIKVVEDKPVEVINESEPNNDFEKANQIAKSNMLVK 887

		

		Query: 1651 VHAEVTDELDGDVKITSDFAEKVDFNKVGTYTVTLNAKDEYGNTAEPVK 1699

		                  D  D             D  K G   +TLN  +  G T    K

		Sbjct: 888  GTLSEEDYSDK---------YYFDVAKKGNVKITLNNLNSVGITWTLYK 927

		

		

		>PF05043#Transcriptional activator

		          Length = 493

		

		 Score = 58.4 bits (141), Expect = 3e-11

		 Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 38/247 (15%)

		

		Query: 1   MREYLDSKSQKKVALLEKIF--YAENHTSTQEELLN-----------DLNITYPTLISTI 47

		           MR+ L  KS +++ LLE +F      H S   ELLN            +   +P LI   

		Sbjct: 1   MRDLLSKKSHRQLELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHS 60

		

		Query: 48  KTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLAS 107

		            T              I+++           D+  I+++ + + + S  F ILE +    

		Sbjct: 61  ST----------NGIRIINT-----------DDSDIEMVYHHFFKHSTHFSILEFIFFNE 99

		

		Query: 108 FPNLQALAKKVHVSYSGIKKEIKELNEELRER-NLSISTGNQVEITGDEFSLRIFYAFLF 166

		               +++ K+ ++S S + + I ++N+ ++ +    +S    V+I G+E  +R F+A  F

		Sbjct: 100 GCQAESICKEFYISSSSLYRIISQINKVIKRQFQFEVSLTP-VQIIGNERDIRYFFAQYF 158

		

		Query: 167 LVTYSGDRWPFSFVQYDEITDLLESCPKEIYRANSIDKGMMIHYYVAMHLLRDRMN--CQ 224

		              Y    WPF     + ++ LLE   KE     ++    M+   +  +L R +     +

		Sbjct: 159 SEKYYFLEWPFENFSSEPLSQLLELVYKETSFPMNLSTHRMLKLLLVTNLYRIKFGHFME 218

		

		Query: 225 IDTTRQF 231

		           +D     

		Sbjct: 219 VDKDSFN 225

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 42.7 bits (100), Expect = 2e-07

		 Identities = 14/48 (29%), Positives = 22/48 (45%)

		

		Query: 7  TKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFYYHFTDKYDLL 54

		          T++ I    + L   +     S+ +I    G+ R   Y+HF DK DL 

		Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF 59

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score =  129 bits (325), Expect = 6e-35

		 Identities = 92/400 (23%), Positives = 168/400 (42%), Gaps = 14/400 (3%)

		

		Query: 25  FIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFF 84

		           F  + +E  LN++L D+   F+   A+  W+ T ++LT  I   + G L      + L  

		Sbjct: 24  FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83

		

		Query: 85  TAVSFSIAGTLIAALSPTFAMLMI-GRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGM 143

		             +  +  G++I  +  +F  L+I  R +Q  G A    L+   +    P+  RG A G+

		Sbjct: 84  FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143

		

		Query: 144 IGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDI 203

		           IG ++     VGP I G+I   + W+++  I +   II + F MK ++    +     DI

		Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKEVRIKGH-FDI 201

		

		Query: 204 LSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGIALGLFVWRQLTMEKPLMDLKV 263

		             IIL      G+VF              V V      ++  +FV     +  P +D  +

		Sbjct: 202 KGIILM---SVGIVFFMLFTTSYSISFLIVSV------LSFLIFVKHIRKVTDPFVDPGL 252

		

		Query: 264 FKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAG-LVLLPGGVLNGLMSPF 322

		            K   F +G++   I F  +   + ++P  +++   L+    G +++ PG +   +    

		Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312

		

		Query: 323 TGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQT 382

		            G L D  GP  ++  G     V+    + +   TS    I++  VL  G+S       T

		Sbjct: 313 GGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFTKTVIST 371

		

		Query: 383 NGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAG 422

		              + L  +    G +++N    +S   G A+   ++S  

		Sbjct: 372 IVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIP 411

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 45.7 bits (108), Expect = 1e-08

		 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 14/107 (13%)

		

		Query: 52  EEAEYIEESDKNPGSVMLLCFIDDELASISQLIGHIKKRELHTSELA---ISIRKKYWGL 108

		            +  Y+EE  K       L ++++        IG IK R           I++ K Y   

		Sbjct: 55  MDVSYVEEEGK----AAFLYYLENNC------IGRIKIRSNWNGYALIEDIAVAKDYRKK 104

		

		Query: 109 GIGTICMEELIKYAKSSEYLKLIYLEVVTENKRAINLYKKFGFIEAG 155

		           G+GT  + + I++AK + +  L  LE    N  A + Y K  FI   

		Sbjct: 105 GVGTALLHKAIEWAKENHFCGL-MLETQDINISACHFYAKHHFIIGA 150

		

		

		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

		           family signature.

		          Length = 354

		

		 Score = 32.0 bits (73), Expect = 0.005

		 Identities = 35/206 (16%), Positives = 65/206 (31%), Gaps = 46/206 (22%)

		

		Query: 59  GEVFSSPVAIIMLLILALLILLFVYYELGFFIMMAIYQLRGESYTFFKIIQRLNVKAKYF 118

		           G+V  S   +   LI+AL  +L    +  F     +  +  E           +    Y 

		Sbjct: 21  GQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQ-----SYLPFSQALSYV 75

		

		Query: 119 LSYQAIYFLLYFFLLLPIAGLSL-------------------------PITITENLYLPH 153

		           +    + F    F LL +A L                           PI   + ++   

		Sbjct: 76  VDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSIK 135

		

		Query: 154 FITDELMKTTTGTWLYVIAIAIIFYISARLVFALPYFIEDKSLKISGAIRKSWKYPQKHL 213

		            +  E +K+     L V+ ++I+ +I           +    L   G            L

		Sbjct: 136 SLV-EFLKSI----LKVVLLSILIWI-----IIKGNLVTLLQLPTCGI------ECITPL 179

		

		Query: 214 FFMLLKWVLIIVAIGFLVSIIATIIM 239

		              +L+ +++I  +GF+V  IA    

		Sbjct: 180 LGQILRQLMVICTVGFVVISIADYAF 205

		

		

		>TATBPROTEIN#Bacterial sec-independent translocation TatB protein

		           signature.

		          Length = 171

		

		 Score = 25.8 bits (56), Expect = 0.045

		 Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

		

		Query: 53  QVESKLNGVSMPISEEISRDKLKDAIKQAQAGKIDFEIFIKLAGLAGVRLWEADLSAMKV 112

		            + S    V   +++E+   + +D++K+ +   +        A +  +R        MK 

		Sbjct: 38  ALRSLATTVQNELTQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAES---MKR 94

		

		Query: 113 TYIDNTGNDLVIEP 126

		           +Y+ N       E 

		Sbjct: 95  SYVANDPEKASDEA 108

		

		

		>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP

		           signature.

		          Length = 245

		

		 Score =  167 bits (425), Expect = 1e-53

		 Identities = 79/239 (33%), Positives = 132/239 (55%)

		

		Query: 14  FIVIFAISLVVFWPGVNVHAESWMDSLGVNGTDGVNSSVALFVLVTVLSLSASIVLMFTH 73

		            + +  + L +  P                G    +  V   V +T L+   +I+LM T 

		Sbjct: 4   LLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTS 63

		

		Query: 74  FTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSA 133

		           FT  IIV GL R  LG  + PPNQVL+GLALFL+ F+M P+I   Y D Y+P  +E+ S 

		Sbjct: 64  FTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISM 123

		

		Query: 134 SKVWDETQPLLTKYVAENTYKHDINMMLKAEGEDPVTKKEDAPLMALMPAFILTQITQGF 193

		            +  ++    L +++   T + D+ +  +     P+   E  P+  L+PA++ +++   F

		Sbjct: 124 QEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAF 183

		

		Query: 194 LTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQT 252

		             G  I++ F+ IDL+++++LM LGMMMVPP TI+LPFK+++F+ + G+ L+   + Q+

		Sbjct: 184 QIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQS 242

		

		

		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein

		          family signature.

		          Length = 86

		

		 Score = 42.8 bits (101), Expect = 5e-09

		 Identities = 15/76 (19%), Positives = 34/76 (44%)

		

		Query: 6  ITQIFQDFFYSGLALILPVSLICIVVVIVVAILMAMMQIQDQSLTFLPKIVAFVVALFIL 65

		          +        Y  L L    +++  ++ ++V +   + Q+Q+Q+L F  K++   + LF+L

		Sbjct: 4  LVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLL 63

		

		Query: 66 GPWMFEHMTDLFVGIF 81

		            W  E +      + 

		Sbjct: 64 SGWYGEVLLSYGRQVI 79

		

		

		>TYPE3IMRPROT#Type III secretion system inner membrane R protein

		           family signature.

		          Length = 261

		

		 Score = 94.0 bits (234), Expect = 3e-25

		 Identities = 51/230 (22%), Positives = 107/230 (46%), Gaps = 1/230 (0%)

		

		Query: 12  VFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVATWVDVSGITTLPD-LLLRVTSEV 70

		              RV + +   P+L  R++P  VK+   M I+  +A  +  + +       L     ++

		Sbjct: 19  PLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQI 78

		

		Query: 71  VFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAILDTFFVVIFL 130

		           + G+AL   ++      + AG +I   +G S    +DP+      + A I+D   +++FL

		Sbjct: 79  LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFL 138

		

		Query: 131 SLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIALPIMGSIFIVN 190

		           +  G  +LI  L+ +F                 L         + + +ALP++  +  +N

		Sbjct: 139 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLN 198

		

		Query: 191 IILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEMI 240

		           + L  +++ APQ++IF+  F + +T GI ++A  +P+++   ++L  E+ 

		Sbjct: 199 LALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248

		

		

		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

		           family signature.

		          Length = 354

		

		 Score =  275 bits (704), Expect = 1e-92

		 Identities = 96/340 (28%), Positives = 183/340 (53%), Gaps = 2/340 (0%)

		

		Query: 4   DNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVALLK 63

		             KTE+ TP++I+ AR +G VAKSKE+ +   ++ ++ +L    + + ++  +  +   +

		Sbjct: 3   GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAE 62

		

		Query: 64  QP--PKLANMESYSLFYLMEFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRL 121

		           Q   P    +       L+EF  +  P++ +  +  + ++ VQ G L S +A+KP  K++

		Sbjct: 63  QSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKI 122

		

		Query: 122 NPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFA 181

		           NP    KR+FS+K +VE +K++L + LLS + +I  + +L TL+             +  

		Sbjct: 123 NPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQ 182

		

		Query: 182 LFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIA 241

		           + +   +   +   VI + D+ ++ Y Y K L+MSK EIK E K+ EG PE+K ++R   

		Sbjct: 183 ILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQFH 242

		

		Query: 242 RGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQVADTD 301

		           + +   ++ + +  ++ VV NPTHI++ + Y + +   P +  K  D     +R++A+ +

		Sbjct: 243 QEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEE 302

		

		Query: 302 GVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVMKELM 341

		           GVP++    LAR++Y+    D YI  +  +   EV++ L 

		Sbjct: 303 GVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE 342

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 31.2 bits (70), Expect = 0.007

		 Identities = 24/182 (13%), Positives = 60/182 (32%), Gaps = 9/182 (4%)

		

		Query: 7   EKMEIFKGNSKREIHKKIQLVTNEPYKITDERVTKLGIFKKQYEVTAVIMSEVAIADGRM 66

		             +E  +   ++ +   +   T +  KI      K  +  ++ ++   +   +  +    

		Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245

		

		Query: 67  DFQETFQKSVVKTRPKTDDLLKKEKLLEMLAAGAELAQST------PLLEERKTQEEELS 120

		              +T +        +  +L K  +     +        T       L  E+   E +  

		Sbjct: 246 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQ 305

		

		Query: 121 SMRLELAALNRELAVKMREEREQNSDFVKFLKGRGISDTYVADF---MQAGRKQFKQVET 177

		            +     +L R+L      +++  ++  K  +   IS+         + A R+  KQ+E 

		Sbjct: 306 VLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEA 365

		

		Query: 178 AH 179

		            H

		Sbjct: 366 EH 367

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 28.4 bits (63), Expect = 0.036

		 Identities = 5/32 (15%), Positives = 13/32 (40%)

		

		Query: 3  GLYIGAAGMMNYMQHIQVHSNNVANAQTPGFK 34

		           +    +G+      +   SNN+++    G+ 

		Sbjct: 3  LINNAMSGLNAAQAALNTASNNISSYNVAGYT 34

		

		

		>SECFTRNLCASE#Bacterial translocase SecF protein signature.

		          Length = 333

		

		 Score = 28.3 bits (63), Expect = 0.032

		 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 8/50 (16%)

		

		Query: 3   ITTIIGLVLAVIVIAGSFMIQNISLAMLFSAEALIVIILGTITAVMMAHP 52

		           +TT+  L L  ++I G  +I+    AM++       +  GT ++V +A  

		Sbjct: 262 MTTL--LALVPMLIWGGDVIRGFVFAMVWG------VFTGTYSSVYVAKN 303

		

		

		>OMPADOMAIN#OMPA domain signature.

		          Length = 346

		

		 Score = 57.6 bits (139), Expect = 1e-11

		 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)

		

		Query: 148 ITIRDDILFQSGSAEL-SAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSN 206

		            T++ D+LF    A L   G+  + +   +L          +V G+TD   I +  Y  N

		Sbjct: 215 FTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDAY--N 270

		

		Query: 207 WELSVARAVNFMEAIIQENSEVNPGEFSARGYGEFRPVAKNDIAANREK---------NR 257

		             LS  RA + ++ +I +   +   + SARG GE  PV  N     +++         +R

		Sbjct: 271 QGLSERRAQSVVDYLISKG--IPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDR 328

		

		Query: 258 RVEIMVRPI 266

		           RVEI V+ I

		Sbjct: 329 RVEIEVKGI 337

		

		

		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD

		           chaperone signature.

		          Length = 168

		

		 Score = 28.7 bits (64), Expect = 0.039

		 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 8/130 (6%)

		

		Query: 165 IYHYGYMSEIVEKQDKSDRNLRLLEKEVKNNKNSGFVHFNIGQEMNRLGNKKEALKEFSE 224

		           +Y   +      K + + +  + L   V ++ +S F    +G     +G    A+  +S 

		Sbjct: 39  LYSLAFNQYQSGKYEDAHKVFQALC--VLDHYDSRF-FLGLGACRQAMGQYDLAIHSYSY 95

		

		Query: 225 AFRLRDHNHYIWAKLSAYHIAELLEQEKRYDESLAIIEEARVIWPNVPEFPLKKANILYV 284

		              +             +H AE L Q+    E+ + +  A+ +  +  EF      +  +

		Sbjct: 96  GAIMDIKEPR-----FPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSM 150

		

		Query: 285 NHQLEDAKEI 294

		              ++  KE+

		Sbjct: 151 LEAIKLKKEM 160

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 42.9 bits (101), Expect = 9e-07

		 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

		

		Query: 175 TIFIAEDSQMLRQLLEDTLHEAGYTNLQFFANGREAQEHIFKLLKEQKEQTFENVNLLIT 234

		           TI +A+D   +R +L   L  AGY      +N       I               +L++T

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRIT-SNAATLWRWI-------AAGDG---DLVVT 53

		

		Query: 235 DIEMPQMDGHHLTKVIKEDEIGRELPVVIFSSLITEDLEHKGAGVGADAQVSKP 288

		           D+ MP  +   L   IK  +   +LPV++ S+  T     K +  GA   + KP

		Sbjct: 54  DVVMPDENAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score =  127 bits (319), Expect = 2e-35

		 Identities = 84/277 (30%), Positives = 129/277 (46%), Gaps = 9/277 (3%)

		

		Query: 1   MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLD 60

		             +NTN +SL TQ  L K+   ++ A ERL+SG RINS+ DDAAG A+  R      GL 

		Sbjct: 2   QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61

		

		Query: 61  AASKNSSMGIDLLQTADSALSSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKE 120

		            AS+N++ GI + QT + AL+ +++ LQR+R+L+VQ++NG+ SD D K    E    ++E

		Sbjct: 62  QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121

		

		Query: 121 LDHVADTTNYNNIKLLDQTATGAATQVSIQASDKANDLINIDLFNAKGLSAGTITLGSGS 180

		           +D V++ T +N +K+L Q       Q+ IQ      + I IDL      S G      G 

		Sbjct: 122 IDRVSNQTQFNGVKVLSQD-----NQMKIQVGANDGETITIDLQKIDVKSLG----LDGF 172

		

		Query: 181 TVAGYSALSVADADSSQQATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKA 240

		            V G    +V D  SS +     D      +  R  + +G          V ++     A

		Sbjct: 173 NVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAA 232

		

		Query: 241 SASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQT 277

		           +     D        ++ K    T  +    + A   

		Sbjct: 233 NGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269

		

		

		

		 Score = 75.9 bits (186), Expect = 1e-17

		 Identities = 51/294 (17%), Positives = 103/294 (35%), Gaps = 16/294 (5%)

		

		Query: 4   NTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAAS 63

		           +T   ++  + Y+   N  +T       +   +  +    AG A    +     G     

		Sbjct: 217 DTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGD 276

		

		Query: 64  KNSSMGIDLLQTADSALSSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDH 123

		                G+       +       +   +    V  +                 + ++   +

		Sbjct: 277 TFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVAD----ITAGAANVDAATLQSSKN 332

		

		Query: 124 VADTTNYNNIKLLDQTATGAATQVSIQASDKANDLINIDLFNAKGLSAGTITLGSGSTVA 183

		           V  +         D+T   +A    ++A++       I +  A+  +       + +   

		Sbjct: 333 VYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKT 392

		

		Query: 184 GYSA------------LSVADADSSQQATEAIDELINNISNGRALLGAGMSRLSYNVSNV 231

		            +               + A   S+     +ID  ++ +   R+ LGA  +R    ++N+

		Sbjct: 393 MFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNL 452

		

		Query: 232 NNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285

		            N      ++ S IEDAD A E+S M+K +IL Q   S+L+QANQ PQ +  L+

		Sbjct: 453 GNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 93.4 bits (232), Expect = 9e-26

		 Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

		

		Query: 3   KLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMDGL 62

		            +L+ DD   +RT++   +  + ++V     N     +       D+V  D+ MP+ +  

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

		

		Query: 63  EALAQIMAKDPSAKVIMCSAMGQQGMVVDAIKKGAKDFIVKPFQADRVLEALEKA 117

		           + L +I    P   V++ SA       + A +KGA D++ KPF    ++  + +A

		Sbjct: 64  DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 35.6 bits (82), Expect = 5e-04

		 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 9/67 (13%)

		

		Query: 353 LIRNSVDHGAETVEVRRKNGKNETATINLKAFHSGNNVVIEIADDGAGINKRKVLEKAIA 412

		           L+ N + HG             +   I LK       V +E+ + G+   K         

		Sbjct: 263 LVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTG 314

		

		Query: 413 -KNVVTR 418

		            +NV  R

		Sbjct: 315 LQNVRER 321

		

		

		>FLGMOTORFLIN#Flagellar motor switch protein FliN signature.

		          Length = 137

		

		 Score = 59.9 bits (145), Expect = 5e-15

		 Identities = 20/81 (24%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

		

		Query: 21  GREKGSIRQVD---NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEK 77

		           G   G+++ +D   +I V L V LG+  M + ++  L+ G V+ ++   G  ++I ++  

		Sbjct: 45  GDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104

		

		Query: 78  KVGIGEAILMDENFGIVISEI 98

		            +  GE +++ + +G+ I++I

		Sbjct: 105 LIAQGEVVVVADKYGVRITDI 125

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 28.9 bits (64), Expect = 0.041

		 Identities = 33/202 (16%), Positives = 56/202 (27%), Gaps = 19/202 (9%)

		

		Query: 48   EADNEEQATIPLKEIAPSLVSAKLLDSEPETKLPSAPLELKEVKETLAAIAKQAIDQPKI 107

		             A N E A      +  +  + ++  S  ETK  +   E KE   T+    K  ++  K 

		Sbjct: 1062 TAQNREVAKEAKSNVKANTQTNEVAQSGSETK-ETQTTETKE-TATVEKEEKAKVETEKT 1119

		

		Query: 108  DSAPQVAQ--PP------------EMNTPKEPT---KNTTREQQPPPELIMPTKDSPKLA 150

		               P+V     P            E     +PT   K    +     +   P K++    

		Sbjct: 1120 QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNV 1179

		

		Query: 151  ENVAKNQPALAKLPQEKEAVQLFKASIKEPVTAKEEVAVKKPAESSNIWHDTTKQLTPAA 210

		            E        +       E  +    +  +P    E     K     ++            

		Sbjct: 1180 EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATT 1239

		

		Query: 211  KVEVPVTLKQLDKTITDQIEQL 232

		                  T+   D T T+    L

		Sbjct: 1240 SSNDRSTVALCDLTSTNTNAVL 1261

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 44.9 bits (106), Expect = 4e-07

		 Identities = 16/36 (44%), Positives = 25/36 (69%)

		

		Query: 5  MYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVV 40

		          +  A+SG+NA Q AL+  SNNI++ N  GY +Q+ +

		Sbjct: 4  INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI 39

		

		

		

		 Score = 38.4 bits (89), Expect = 4e-05

		 Identities = 12/47 (25%), Positives = 25/47 (53%)

		

		Query: 363 ISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVNL 409

		           +S      S V+L  E+ NL  +Q  +  N +V++ A+ +   ++N+

		Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545

		

		

		>FLGMOTORFLIN#Flagellar motor switch protein FliN signature.

		          Length = 137

		

		 Score = 51.4 bits (123), Expect = 4e-12

		 Identities = 22/68 (32%), Positives = 37/68 (54%)

		

		Query: 7   IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGKMF 66

		           IP+++  ELGRT+  +  LL + +G+V  L+      + I I+G  I  GE++    K  

		Sbjct: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119

		

		Query: 67  VKITKLGE 74

		           V+IT +  

		Sbjct: 120 VRITDIIT 127

		

		

		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.

		          Length = 344

		

		 Score =  145 bits (368), Expect = 4e-43

		 Identities = 81/334 (24%), Positives = 166/334 (49%), Gaps = 9/334 (2%)

		

		Query: 1   MSDKLSQEQIDALLSQMSEGKV-VDESTEIGDFGRFHPYDFHKPEKFGAEHLESLKTIAS 59

		           M++ LSQ++ID LL+ +S G   ++++  I D  +   YDF +P+KF  E + +L  +  

		Sbjct: 1   MTEVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHE 60

		

		Query: 60  AFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELGQIII 119

		            F + +   +S ++R  +H      DQ+++   +I ++P  S    +I + +P  G  ++

		Sbjct: 61  TFARLTTTSLSAQLRSMVHVHVASVDQLTYEE-FIRSIPTPS-TLAVITM-DPLKGNAVL 117

		

		Query: 120 ELDLAYIIYIHECLSGGNPKRKLSERRLLSVFEELTLKSILEKFCEALKDSFKSVHPISP 179

		           E+D +    I + L GG   +    +R L+  E   ++ ++ +    +++S+  V  + P

		Sbjct: 118 EVDPSITFSIIDRLFGGT-GQAAKVQRDLTDIENSVMEGVIVRILANVRESWTQVIDLRP 176

		

		Query: 180 EIVNIETNPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKLEN---VV 236

		            +  IETNP   ++  P++M+ LV+++ K       M   +P+ ++E I++KL +     

		Sbjct: 177 RLGQIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFS 236

		

		Query: 237 EYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL-LTETHIRDTLK 295

		                    +   +  +L  V+ +    VG ++ + +++  L VGD++ L +TH+ D   

		Sbjct: 237 SVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFV 296

		

		Query: 296 GYVTEKWKFECYMGKSGNQKAVKFMRHTGRTEQE 329

		             +  + KF C  G  G + A + +     T QE

		Sbjct: 297 LSIGNRKKFLCQPGVVGKKIAAQILERIESTSQE 330

		

		

		>FLGMOTORFLIN#Flagellar motor switch protein FliN signature.

		          Length = 137

		

		 Score = 51.4 bits (123), Expect = 4e-10

		 Identities = 21/71 (29%), Positives = 42/71 (59%)

		

		Query: 444 ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVD 503

		           ++ DIPV L V  G  ++ +++ +   +  V+ L     EPL + +NG  I +G +V V 

		Sbjct: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115

		

		Query: 504 DHFGIQMTELV 514

		           D +G+++T+++

		Sbjct: 116 DKYGVRITDII 126

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score =  135 bits (340), Expect = 2e-36

		 Identities = 112/556 (20%), Positives = 215/556 (38%), Gaps = 66/556 (11%)

		

		Query: 4   SDFNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTAVYGDGGLLGGKQTGYGVKV 63

		           S  N ++SG++AAQ A   A  NIS+ N  GY RQ         +  L  G   G GV V

		Sbjct: 2   SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTT--IMAQANSTLGAGGWVGNGVYV 59

		

		Query: 64  TDIKRLTNTALTTQYNNQIAKQSASLYQSGALNQALNLFGTPGKNTPSDNLDNFFTAWAA 123

		           + ++R  +  +T Q      + S    +   +++  N+  T   +  +  + +FFT+   

		Sbjct: 60  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLAT-QMQDFFTSLQT 118

		

		Query: 124 LAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELETTIAADTDAAIQDLNSLIKKLGSI 183

		           L  N +      AL+       +Q       L++ +  +     A++  +N+  K++ S+

		Sbjct: 119 LVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASL 178

		

		Query: 184 NKAI----GNAGSNPPNDLLNQRDQLLSTMAGYAGISVSAHPNNPDVYDVTIG-GRLVVQ 238

		           N  I    G      PN+LL+QRDQL+S +    G+ VS        Y++T+  G  +VQ

		Sbjct: 179 NDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDG--GTYNITMANGYSLVQ 236

		

		Query: 239 GDETTEITS-------TRTATGFEFSVDGQKLNMPE-----GSIIASVRVNQNEIKSYQE 286

		           G    ++ +       +RT   +        + +PE     GS+   +     ++   + 

		Sbjct: 237 GSTARQLAAVPSSADPSRTTVAY-VDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRN 295

		

		Query: 287 KIETFSNGLAKALDDIQV------KNVNKTMDDLQK------------------INDALQ 322

		            +   +   A+A +           +  +    + K                  + DA  

		Sbjct: 296 TLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASA 355

		

		Query: 323 ANPNDEKLLSNRDELLRQLEKFPGVTRSGDTLTIGGVDHPVDTLGTSTYVTDVNDFSIPI 382

		               D K+  + ++   Q+ +    T    T    G         T T    VND S  +

		Sbjct: 356 VLATDYKISFDNNQW--QVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVND-SFTL 412

		

		Query: 383 FAQSSGKWILNPAIT-------------SNADNKPFLGVIAADIASLKTDKNIQGTTFPS 429

		              S     ++  IT              ++DN+    ++     S          +F  

		Sbjct: 413 KPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGA---KSFND 469

		

		Query: 430 FMDGIITEVATDASKSSATATADTQALSSLTESKSSLEGVNIDEEMTNIMQYQSYYVANT 489

		               +++++    +    ++      ++ L+  + S+ GVN+DEE  N+ ++Q YY+AN 

		Sbjct: 470 AYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANA 529

		

		Query: 490 KAMNTVNDMMKALLAM 505

		           + + T N +  AL+ +

		Sbjct: 530 QVLQTANAIFDALINI 545

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score = 45.4 bits (107), Expect = 1e-07

		 Identities = 37/238 (15%), Positives = 75/238 (31%), Gaps = 1/238 (0%)

		

		Query: 1   MRISTNQQASSIINQLNNVSGNLAKYQLQVSSGKKYESMSENPGATAQILSYNHVLSQLN 60

		             I+TN  +    N LN    +L+    ++SSG +  S  ++    A    +   +  L 

		Sbjct: 2   QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61

		

		Query: 61  REKTDVTEAKSLLNTAETSLSSMSTSMNRVNALVLQAINGTSDKDNMSQSAEEIKGLLDV 120

		           +   +  +  S+  T E +L+ ++ ++ RV  L +QA NGT+   ++    +EI+  L+ 

		Sbjct: 62  QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121

		

		Query: 121 LISVANSED-DGRYVFSGSSTSVKPFTTDKTTGEIIYNGTTENKKFRVTDTLEVEVFHDG 179

		           +  V+N    +G  V S  +        +      I     + K   +            

		Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEAT 181

		

		Query: 180 SAMTDVFNNIQKIVDAMKTGDKDALSALQETNSKNIEIITNSMTNIGGQKNGVTAYDN 237

		                         D    G       +                 +           +

		Sbjct: 182 VGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 32.6 bits (74), Expect = 3e-04

		 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

		

		Query: 4   GINTSGSALNAAKQWMEVSSNNIANADSSAAPGETPFLRKRVVLSEITPFETALTGTKGV 63

		            IN + S LNAA+  +  +SNNI++ + +       + R+  ++++      A  G  G 

		Sbjct: 3   LINNAMSGLNAAQAALNTASNNISSYNVAG------YTRQTTIMAQANSTLGA-GGWVGN 55

		

		Query: 64  KVSEISSDTGSVKRVYDPTHPNANEAGYVNYANVDMTAEMTNLMVGQKMYAANTSALQAN 123

		            V         V+R YD      N+       +  +TA    +     M + +TS+L   

		Sbjct: 56  GV-----YVSGVQREYDAFI--TNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQ 108

		

		

		

		 Score = 28.4 bits (63), Expect = 0.008

		 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

		

		Query: 65  VSEISSDTGSVKRVYDPTHPNANEAGY---VNYANVDMTAEMTNLMVGQKMYAANTSALQ 121

		           VS+I + T ++K     T  N          + + V++  E  NL   Q+ Y AN   LQ

		Sbjct: 475 VSDIGNKTATLKTSSA-TQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQ 533

		

		Query: 122 ANEKMMEKDLEI 133

		               + +  + I

		Sbjct: 534 TANAIFDALINI 545

		

		

		>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE

		           signature.

		          Length = 103

		

		 Score = 31.2 bits (70), Expect = 2e-04

		 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

		

		Query: 35  QMLDSMSDTQSNAQTSVSNLLTTGEG-NASDVLIQMKKAESEMKTAAVIRDNVIESYKQL 93

		             LD +SDTQ+ A+T          G   +DV+  M+KA   M+    +R+ ++ +Y+++

		Sbjct: 39  AALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEV 98

		

		Query: 94  LNMQV 98

		           ++MQV

		Sbjct: 99  MSMQV 103

		

		

		>FLGMRINGFLIF#Flagellar M-ring protein signature.

		          Length = 559

		

		 Score =  171 bits (435), Expect = 7e-49

		 Identities = 110/584 (18%), Positives = 219/584 (37%), Gaps = 83/584 (14%)

		

		Query: 9   SKLKNWHKGAILVGLFVVVTVLL---LYMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVD 65

		           ++L+   +  ++V     V +++   L+  TP    TL+ NLS+     +  QL +M + 

		Sbjct: 17  NRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYR-TLFSNLSDQDGGAIVAQLTQMNIP 75

		

		Query: 66  YTVDK-SGNILVDEKVETLVRDKFADLGIPYTGQDGNDILLNSSLGASEEDKKMQEKVGT 124

		           Y     SG I V       +R + A  G+P  G  G ++L     G S+  +++  +   

		Sbjct: 76  YRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRAL 135

		

		Query: 125 KVNLEKEIVQSYGTTIDSASVQLTLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLG 184

		           +  L + I       + SA V L +P+ S  F    +  +A+VT+  +  + L   Q+  

		Sbjct: 136 EGELARTIETLGP--VKSARVHLAMPKPSL-FVREQKSPSASVTVTLEPGRALDEGQISA 192

		

		Query: 185 IQRTVSAAVPNVASDDVAIIDTKNGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIE 244

		           +   VS+AV  +   +V ++D    ++++++TS  + + A   ++   N +   ++  IE

		Sbjct: 193 VVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDA---QLKFANDVESRIQRRIE 249

		

		Query: 245 GTLSSIFALDNFRVNTNVAVNFDEIKQNTEHY-PNDGKVRSNQKDTSTDTSKGSANTTES 303

		             LS I    N        ++F   +Q  EHY PN    ++  +    + S+        

		Sbjct: 250 AILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPG 309

		

		Query: 304 ---GTASN--------------------ADVPNYTEQNGDDTNTYTSEKSSETTNYELDS 340

		              G  SN                     + P  +     ++    S + +ET+NYE+D 

		Sbjct: 310 GVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDR 369

		

		Query: 341 TIQEIKKHPA-LAKTNVVVWVDQNALNK------NGVDMAEFTKAIGVSAGLTPNMTTEE 393

		           TI+  K +   + + +V V V+   L            M +       + G +       

		Sbjct: 370 TIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMGFSDK----- 424

		

		Query: 394 AGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAEPASKAWIWW----L 448

		                              GD + ++   F      +  D T    P  +   +      

		Sbjct: 425 ------------------RGDTLNVVNSPF------SAVDNTGGELPFWQQQSFIDQLLA 460

		

		Query: 449 AGGLLFAVIAAGIITYIILLKRKEQLEEALEPEEKDYIPAEEAIINPEEHPDFNFQTDAF 508

		           AG  L  ++ A I+    +  +  +  E  +  ++     +  +    E       +   

		Sbjct: 461 AGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQE-----QAQVRQETEEAVEVRLSKDE 515

		

		Query: 509 DLSE--PELKARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550

		            L +     +   E +  ++ EM+  DP   A VI++W++   E

		Sbjct: 516 QLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWMSNDHE 559

		

		

		>FLGMOTORFLIG#Flagellar motor switch protein FliG signature.

		          Length = 344

		

		 Score =  193 bits (491), Expect = 8e-61

		 Identities = 112/335 (33%), Positives = 189/335 (56%), Gaps = 4/335 (1%)

		

		Query: 34  SGISRREKAALIIWSLDEQIATEVVDLLPDASKQRLAREMAKMKEMDGGAVEEATREFLG 93

		           S ++ ++KAA+++ S+  +I+++V   L     + L  E+AK++ +     +    EF  

		Sbjct: 13  SALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFK- 71

		

		Query: 94  ELELLSGGIAKLDREHLQRLFPDMTTEELNQLIYGVEAESRIGETALDILREIDDVDSLF 153

		           EL +    I K   ++ + L       +    I      S +     + +R  D   ++ 

		Sbjct: 72  ELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIIN-NLGSALQSRPFEFVRRADPA-NIL 129

		

		Query: 154 TIISDESPQTIAMIASYMKPEEASKLLALLPEEKMINTVIGIASLEQFDSEVMQNVSNLL 213

		             I  E PQTIA+I SY+ P++AS +L+ LP E   N    IA +++   EV++ V  +L

		Sbjct: 130 NFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVL 189

		

		Query: 214 RIKLDTMSNSSLNKTDGIKNVANILNNVTRGLERTIFEHLDAEQAELSERIKEKMFMFED 273

		             KL ++S+       G+ NV  I+N   R  E+ I E L+ E  EL+E IK+KMF+FED

		Sbjct: 190 EKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFED 249

		

		Query: 274 IILLDNMTLQQVLAEIQDNNKIARALKNEKEELKEKILSCVSKNRRDMITEELEVLGPIR 333

		           I+LLD+ ++Q+VL EI D  ++A+ALK+    ++EKI   +SK    M+ E++E LGP R

		Sbjct: 250 IVLLDDRSIQRVLREI-DGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTR 308

		

		Query: 334 LSDVEQAQQDIANVVKNLEKDGKIVIQRGEQDVLI 368

		             DVE++QQ I ++++ LE+ G+IVI RG ++ ++

		Sbjct: 309 RKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 32.0 bits (72), Expect = 0.002

		 Identities = 15/79 (18%), Positives = 33/79 (41%)

		

		Query: 24  YLDDIEETEEIESPYSKELEQLESHQKELEKHLSAIEIEQQKLANEKAALQAERQAIEEL 83

		               I+  E  ++       +LE   +      +A   + + L  EKAAL+AE+  +E  

		Sbjct: 244 DSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQ 303

		

		Query: 84  RRDAEAEIEANKQAFEKEK 102

		            +   A  ++ ++  +  +

		Sbjct: 304 SQVLNANRQSLRRDLDASR 322

		

		

		>BINARYTOXINA#Clostridial binary toxin A signature.

		          Length = 454

		

		 Score = 30.0 bits (67), Expect = 0.011

		 Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 41/159 (25%)

		

		Query: 99  ILGSSSGSIVAMHVLKNHPEVVKKIAFHEPPINTFLPDSE---MWQEANEKIVQTALTKN 155

		           IL SS  S      L+     +   AF E P + FL D E    W++   + V+  L   

		Sbjct: 17  ILTSSFPSYTYAQDLQIASNYITDRAFIERPED-FLKDKENAIQWEKKEAERVEKNLDTL 75

		

		Query: 156 MAEAMQLFGETLHIAPIDAESMSKPAVT--------IDEVTKDSTTQQM----------- 196

		             EA++L+ +       D+E +S  + T        I+   ++   + +           

		Sbjct: 76  EKEALELYKK-------DSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAISKNKIDK 128

		

		Query: 197 -----------KYWFTYEIRQYTSSNISLDDFKPYVHQI 224

		                      K+ F  EIR    + ISL+ F      I

		Sbjct: 129 PINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKETI 167

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 27.8 bits (62), Expect = 0.031

		 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 11/52 (21%)

		

		Query: 63  EASKKMTNPAPHKIYNTQVWIKNDRAVAIMQATIQTRTIINGVEMELNSDAK 114

		           E      + AP+++YN    I N   V +M         I  +E  L  +AK

		Sbjct: 244 ETGTPAASIAPYRVYN----IGNSSPVELM-------DYIQALEDALGIEAK 284

		

		

		>MALTOSEBP#Maltose binding protein signature.

		          Length = 396

		

		 Score = 64.4 bits (156), Expect = 2e-13

		 Identities = 80/314 (25%), Positives = 127/314 (40%), Gaps = 21/314 (6%)

		

		Query: 65  KVKYVMQENVEEKLLTGIAGGELPDIIMWDRYQTALYAPKGVLEPLDKLVKEDNLKMDDF 124

		           KV     + +EEK     A G+ PDII W   +   YA  G+L      +  D    D  

		Sbjct: 60  KVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAE----ITPDKAFQDKL 115

		

		Query: 125 YEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEAGVKPPTTWDELATAAQKTTKWDGN 184

		           Y  +   + Y+ KL   P+  +   L YNK LL      PP TW+E+  A  K  K  G 

		Sbjct: 116 YPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP----NPPKTWEEIP-ALDKELKAKGK 170

		

		Query: 185 KMTQAGMSLQDVGLFNLYLMQAGG------ELVTSDNKETAFNSEQGLEVLNYW-DKMQN 237

		                  +LQ+   F   L+ A G      E    D K+   ++      L +  D ++N

		Sbjct: 171 SALM--FNLQE-PYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 227

		

		Query: 238 DLKVYQRGFDDGSDAFAAGKEAMTYNGPWALADYNKVEDLDYGVVEPPKGPNGDKGAIMG 297

		                   +     AF  G+ AMT NGPWA ++ +    ++YGV   P          +G

		Sbjct: 228 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDT-SKVNYGVTVLPTFKGQPSKPFVG 286

		

		Query: 298 GFGLVMPKQAEHKDGAWDFMKWWTTKPENGVEFAKISGWLPANKIAAEDEYFTKDPNYSV 357

		                +   + +K+ A +F++ +    E G+E       L A  + + +E   KDP  + 

		Sbjct: 287 VLSAGINAASPNKELAKEFLENYLLTDE-GLEAVNKDKPLGAVALKSYEEELAKDPRIAA 345

		

		Query: 358 FVNTMKYAKIRPTV 371

		            +   +  +I P +

		Sbjct: 346 TMENAQKGEIMPNI 359

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 28.6 bits (64), Expect = 0.033

		 Identities = 18/71 (25%), Positives = 30/71 (42%)

		

		Query: 152 KIAVSGATGGVGSLSSAILSKRGFSVVASSGKSDAKEFLEKFGVSEIVSREAFQPEKVRA 211

		           K  V+GA G +G   S  L + G  VV     +D  +   K    E++++  FQ  K+  

		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

		

		Query: 212 LDKQLYAGAID 222

		            D++       

		Sbjct: 62  ADREGMTDLFA 72

		

		

		>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.

		          Length = 52

		

		 Score = 24.4 bits (53), Expect = 0.043

		 Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

		

		Query: 1  MKKKWLLLILSVIVLCAIIFGIKWLLYRDNLVEM 34

		          MK     L+  V+++C  +    +L  R +L E+

		Sbjct: 1  MKLPRSSLVWCVLIVCLTLLIFTYLT-RKSLCEI 33

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 36.3 bits (84), Expect = 3e-04

		 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

		

		Query: 42  DKSVEEITSPVSGTIKEIKVAEGTVATVGQVLVTFDGVEGHEDDAEEESAAPKAESTEST 101

		               +EI    +  +KEI V EG     G VL+    +     +A+              

		Sbjct: 93  SGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGA---EADTLKTQSSLLQARLE 149

		

		Query: 102 PAPAQASGKGIFEFKLPDIG 121

		               Q   + I   KLP++ 

		Sbjct: 150 QTRYQILSRSIELNKLPELK 169

		

		

		

		 Score = 32.5 bits (74), Expect = 0.004

		 Identities = 11/36 (30%), Positives = 16/36 (44%)

		

		Query: 152 DKSVEEITSPVDGTVKDILVSEGTVATVGQVLVTFE 187

		               +EI    +  VK+I+V EG     G VL+   

		Sbjct: 93  SGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLT 128

		

		

		

		 Score = 31.7 bits (72), Expect = 0.008

		 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

		

		Query: 152 DKSVEEITSPVDGTVKDILV-SEGTVATVGQVLV 184

		            +    I +PV   V+ + V +EG V T  + L+

		Sbjct: 324 RQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLM 357

		

		

		

		 Score = 31.7 bits (72), Expect = 0.009

		 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

		

		Query: 18  EIVKWFVQPGDKIEE-DESLFEVQNDKSVEEITSPVSGTIKEIKV-AEGTVATVGQVLV 74

		           EI+    Q  D I      L + +  +    I +PVS  ++++KV  EG V T  + L+

		Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLM 357

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 89.5 bits (222), Expect = 7e-23

		 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 5/126 (3%)

		

		Query: 3   KILIAEDDSAILGVITAFLTEAGYQVMTAKNGIEAYHLFQKETFDLIIMDIMMPSMDGYT 62

		            IL+A+DD+AI  V+   L+ AGY V    N    +        DL++ D++MP  + + 

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 63  LTELIRST-STTPILMMTALSEEDDELKGFDLGADDYIQKPFSYLVLLKRVQVLLRRVNQ 121

		           L   I+      P+L+M+A +     +K  + GA DY+ KPF     L  +  ++ R   

		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD----LTELIGIIGRALA 120

		

		Query: 122 SETKKQ 127

		              ++ 

		Sbjct: 121 EPKRRP 126

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature.

		          Length = 478

		

		 Score = 36.0 bits (83), Expect = 0.001

		 Identities = 8/33 (24%), Positives = 19/33 (57%)

		

		Query: 1114 TIQAPFDGEVSSIYVSDGDTIESGDLLIEVNRI 1146

		             I+   +  V  I V +G+++  GD+L+++  +

		Sbjct: 98   EIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL 130

		

		

		

		 Score = 31.0 bits (70), Expect = 0.028

		 Identities = 13/35 (37%), Positives = 20/35 (57%)

		

		Query: 1083 TGSVIQVVVKKGDSVKKGDPLLITEAMKMETTIQA 1117

		               V +++VK+G+SV+KGD LL   A+  E     

		Sbjct: 104  NSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLK 138

		

		

		>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.

		          Length = 296

		

		 Score = 36.8 bits (85), Expect = 6e-05

		 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 9/130 (6%)

		

		Query: 50  PTKIVSLIPSNTEILFALGLGD-EVKGVSAYDDYPKEAQKIEKV----TSTSVDTEKIIA 104

		           P +IV+L     E+L ALG+    V     Y  +  E    + V      T  + E +  

		Sbjct: 35  PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTE 94

		

		Query: 105 LKPDLVLGHESMLATEKDAYKILTDAGINVFVVPDATN-LKEVEKSIATIGDLTGTEKEA 163

		           +KP  ++       + +   +I   A    F   D    L    KS+  + DL   +  A

		Sbjct: 95  MKPSFMVWSAGYGPSPEMLARI---APGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAA 151

		

		Query: 164 TKVTDSMEKQ 173

		                  E  

		Sbjct: 152 ETHLAQYEDF 161

		

		

		>FLGFLGJ#Flagellar protein FlgJ signature.

		          Length = 313

		

		 Score = 70.9 bits (173), Expect = 2e-15

		 Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 26/228 (11%)

		

		Query: 43  EVAREEMPPESEEPVFSLEQNR-------DDAMAALVVPQTRNSFLRAASTPTFQQTFIN 95

		           ++  E+  PE   P   ++          + A++ LV      ++    S P   + F+ 

		Sbjct: 97  QMTPEQPLPEESTPAAPMKFPLETVVRYQNQALSQLVQKAVPRNYDD--SLPGDSKAFLA 154

		

		Query: 96  SISTQAMDLCKKYNLYPSVMIAQAALESNWGRSELGKA---PNYNLFGIK--GSYNGKSV 150

		            +S  A    ++  +   +++AQAALES WG+ ++ +    P+YNLFG+K  G++ G   

		Sbjct: 155 QLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVT 214

		

		Query: 151 TMKTWEYSDSKGWYQINANFAKYPSHKESLEDNAKKLRNGPSWDSSYYKGAWRENAKTYK 210

		            + T EY + +   ++ A F  Y S+ E+L D    L   P + +     +  + A+  +

		Sbjct: 215 EITTTEYENGEA-KKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQ 273

		

		Query: 211 DATAWLQGRYATDNTYASKLNTLISSYNLTQYDTLYDTIKQQKNVSED 258

		           DA       YATD  YA KL  +I      Q  ++ D + +  +++ D

		Sbjct: 274 DAG------YATDPHYARKLTNMIQ-----QMKSISDKVSKTYSMNID 310

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score =  185 bits (471), Expect = 2e-58

		 Identities = 81/333 (24%), Positives = 138/333 (41%), Gaps = 28/333 (8%)

		

		Query: 1   MNLLVTGGAGFIGSNFVHHILNKHDDYKVVNLDLLT-YAGT---MSNLEDIKENPNHVFV 56

		           M  LVTG AGFIG +    +L       VV +D L  Y       + LE +   P   F 

		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLLEAGHQ--VVGIDNLNDYYDVSLKQARLE-LLAQPGFQFH 57

		

		Query: 57  EGNICDYDLVKKLVTDHKIDTIVNFAAESHVDRSIINPGIFIETNVQGTLNLLNVAKELN 116

		           + ++ D + +  L      + +        V  S+ NP  + ++N+ G LN+L   +   

		Sbjct: 58  KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117

		

		Query: 117 VAKYLQVSTDEVYGSLGETGYFTEETPIA-PNSPYSASKASADLLVRSYFETYGLNVNIT 175

		           +   L  S+  VYG L     F+ +  +  P S Y+A+K + +L+  +Y   YGL     

		Sbjct: 118 IQHLLYASSSSVYG-LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL 176

		

		Query: 176 RCSNNYGPHHFPEKLIPLMITNGLDGENLPIYGDGKNIRDWLHVSDHCAAIDLVIHNGKS 235

		           R    YGP   P+  +       L+G+++ +Y  GK  RD+ ++ D   AI  +      

		Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPH 236

		

		Query: 236 ------------------GEVYNVGGHNERTNNEIVHIIVDDLNLSKDKIVYVEDRLGHD 277

		                               VYN+G  +     + +  + D L + + K   +  + G  

		Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI-EAKKNMLPLQPGDV 295

		

		Query: 278 LRYAIDPKKIETELGWEPKYTFDTGIKETIEWY 310

		           L  + D K +   +G+ P+ T   G+K  + WY

		Sbjct: 296 LETSADTKALYEVIGFTPETTVKDGVKNFVNWY 328

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 63.6 bits (155), Expect = 9e-14

		 Identities = 53/244 (21%), Positives = 89/244 (36%), Gaps = 47/244 (19%)

		

		Query: 1   MSILVTGANGQLGTELVQLLKEHNLTVTEWD----------KDS--------------VD 36

		           M  LVTGA G +G  + + L E    V   D          K +              +D

		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60

		

		Query: 37  IVDKAAVKKAMLDLKPEWIIHCAAFTNVEAA-EDELKNVNWEVNVDGTENISEAAEIVGA 95

		           + D+  +         E +        V  + E+       + N+ G  NI E       

		Sbjct: 61  LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYA--DSNLTGFLNILEGCRHNKI 118

		

		Query: 96  K-LVYISTDYVFDGTKKEAYLPDDKTN-PLNQYGIAKLAGEKVALEKNSQTYVIRTS--- 150

		           + L+Y S+  V+   +K  +  DD  + P++ Y   K A E +A    S  Y +  +   

		Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTY-SHLYGLPATGLR 177

		

		Query: 151 --WVFGKYGN------NFVYSMLKLAETHKELKVVNDQLGRPTYTY--DLADFIRFVIEK 200

		              V+G +G        F  +ML+     K + V N    +  +TY  D+A+ I  + + 

		Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLE----GKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233

		

		Query: 201 NPAY 204

		            P  

		Sbjct: 234 IPHA 237

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 39.3 bits (91), Expect = 7e-05

		 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 16/226 (7%)

		

		Query: 505  HERQNENGNESTANRPTSTKQNRSAGTRAGEKMGDLMEAKNRMVDKAGDMKDTIKNAPTN 564

		            +  + E  N++      +T  N  A   +     + +   +             +   T 

		Sbjct: 981  YNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETV 1040

		

		Query: 565  AKYAVHKGKRDLVRNVSEFSQSFADTRNLQQQERATKRNEKKATVAQRRQEMDKAKAEKS 624

		            A+ +  + K            +  +    ++ +   K N +   VAQ   E  + +  ++

		Sbjct: 1041 AENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET 1100

		

		Query: 625  NLEPYASMQKRQRDYEERKQPVPRTAPTPAP-----QASTPKATPERTASTNQQHERPLQ 679

		                    +++ +   E+ Q VP+     +P     +   P+A P R        + P Q

		Sbjct: 1101 KETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP-Q 1159

		

		Query: 680  KQKNTTKEQVKANKR----------ENTSTTSKNSKTENKITKTTT 715

		             Q NTT +  +  K           E+T+  + NS  EN    T  

		Sbjct: 1160 SQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPA 1205

		

		

		>CARBMTKINASE#Bacterial carbamate kinase signature.

		          Length = 314

		

		 Score = 49.8 bits (119), Expect = 4e-09

		 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 25/148 (16%)

		

		Query: 124 TLESLLERGI---------IPIVNENDTVAVEELEHVTKYGDNDLLSAIVAKLVQADLLI 174

		           T++ L+ERG+         +P++ E+      E++ V    D DL    +A+ V AD+ +

		Sbjct: 178 TIKKLVERGVIVIASGGGGVPVILEDG-----EIKGVEAVIDKDLAGEKLAEEVNADIFM 232

		

		Query: 175 MLSDIDGFYGSNPSTDPDAVMFSEINQITPEIEALAGGKGSKFGTGGMLTKLSAAS-YCM 233

		           +L+D++G       T         + ++  E E     +   F  G M  K+ AA  +  

		Sbjct: 233 ILTDVNGAA-LYYGT-EKE---QWLREVKVE-ELRKYYEEGHFKAGSMGPKVLAAIRFIE 286

		

		Query: 234 NANQKMILTNGKNPTIIFDIMQGEQIGT 261

		              ++ I+    +     + ++G+  GT

		Sbjct: 287 WGGERAIIA---HLEKAVEALEGK-TGT 310

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 32.7 bits (74), Expect = 0.002

		 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

		

		Query: 175 ALESDLKPNSTLILLGSSGVGKSSFINSLAGTDLMKTAGIREDDSKGKHTTTHREMHLLS 234

		            +E   K + +++L G+ G+GKS+ IN+L G D         D   GK +       +  

		Sbjct: 588 VMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHF--DIGTGKDSY----EQIAG 641

		

		Query: 235 NGWIV 239

		                

		Sbjct: 642 I-VAY 645

		

		

		>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein

		           signature.

		          Length = 533

		

		 Score = 26.8 bits (59), Expect = 0.038

		 Identities = 13/38 (34%), Positives = 21/38 (55%)

		

		Query: 52  KNKYEKLLAQQEVDKATEAEAKKKAEEDAKKKAEEAKK 89

		           +   EKL AQQE D   + +   K ++ A +K++E K 

		Sbjct: 391 RKAMEKLAAQQEEDAKNQGKGDCKQQQGASEKSKEGKV 428

		

		

		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD

		           chaperone signature.

		          Length = 168

		

		 Score = 33.7 bits (77), Expect = 8e-04

		 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 4/114 (3%)

		

		Query: 401 NVAVQQYLQEQNKKEATKITDNLISSGSADGYSYTYAASIALQD-KQIDKAETMAKEAIN 459

		           ++A  QY   +  ++A K+   L      D   +        Q   Q D A         

		Sbjct: 41  SLAFNQYQSGK-YEDAHKVFQALCVLDHYD-SRFFLGLGACRQAMGQYDLAIHSYSYGAI 98

		

		Query: 460 IDKDIPEAHYYLSVCYRIKGDMPNAIKEANSARELSSN-PFFDSYYDELEKIKE 512

		           +D   P   ++ + C   KG++  A      A+EL ++   F      +  + E

		Sbjct: 99  MDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLE 152

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 34.5 bits (79), Expect = 2e-05

		 Identities = 16/46 (34%), Positives = 27/46 (58%)

		

		Query: 1  MNKINGFSLVESMVSLLLFAMVCSFLLPTAMTIFEKLDHQKETSRV 46

		           +K  GF+L+E MV +++  ++ S ++P  M   EK D QK  S +

		Sbjct: 4  TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDI 49

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 28.1 bits (62), Expect = 0.042

		 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

		

		Query: 68  DLKNTYTENQHLKERLE-ELAQLESEVADLKKENKDLKESLDIT 110

		            L+     ++  K+++E  L +  S++A L+K NK+L+ES  +T

		Sbjct: 383 SLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLT 426

		

		

		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

		           signature.

		          Length = 347

		

		 Score =  470 bits (1210), Expect = e-170

		 Identities = 192/338 (56%), Positives = 247/338 (73%), Gaps = 6/338 (1%)

		

		Query: 1   MFGFGNKDIGIDLGTANTLVYMKGKGIVLREPSVVAMKKD----TQEIVAVGSDAKNMIG 56

		             G  + D+ IDLGTANTL+Y+KG+GIVL EPSVVA+++D     + + AVG DAK M+G

		Sbjct: 5   FRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLG 64

		

		Query: 57  RTPGNIVAIRPMKDGVIADYDTTAAMMKYYIQKA-GKSVNASKPRVMICVPSGITGVEKR 115

		           RTPGNI AIRPMKDGVIAD+  T  M++++I++    S     PRV++CVP G T VE+R

		Sbjct: 65  RTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERR 124

		

		Query: 116 AVIDATRQAGAKDAFTIEEPFAAAIGAGLPVGEPTGSMVVDIGGGTTEVAVISLGGIVTS 175

		           A+ ++ + AGA++ F IEEP AAAIGAGLPV E TGSMVVDIGGGTTEVAVISL G+V S

		Sbjct: 125 AIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYS 184

		

		Query: 176 RSVRTAGDDLDEVIINYIRKKYNLLIGDRTAEAIKMEIGSASPKGLDLSPFSIRGRDLVT 235

		            SVR  GD  DE IINY+R+ Y  LIG+ TAE IK EIGSA P G ++    +RGR+L  

		Sbjct: 185 SSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYP-GDEVREIEVRGRNLAE 243

		

		Query: 236 GLPKTIEITPEEISEALADTVAAIIDAVKGTLENTPPELSADIMDKGIVLTGGGALLRNL 295

		           G+P+   +   EI EAL + +  I+ AV   LE  PPEL++DI ++G+VLTGGGALLRNL

		Sbjct: 244 GVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNL 303

		

		Query: 296 DTVISEETKMPVIIADEPLDCVAIGTGKALENMDMYKR 333

		           D ++ EET +PV++A++PL CVA G GKALE +DM+  

		Sbjct: 304 DRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGG 341

		

		

		>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family

		           signature.

		          Length = 290

		

		 Score = 94.1 bits (234), Expect = 3e-25

		 Identities = 48/206 (23%), Positives = 98/206 (47%), Gaps = 14/206 (6%)

		

		Query: 35  SECNYCQKKLAFYHIIPIFSFLFFRGKSRCCERPIPIIYFLMELVTPIYILLLYIQFSFS 94

		           S C +C   +     IP+ S+L+ RG+ R C+ PI   Y L+EL+T +  + + +  +  

		Sbjct: 72  SCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAVAMTLAPG 131

		

		Query: 95  YSFLLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLATIAILYNQ-----SLMDLIYS 149

		           +  L   ++ + L      D+  + +P+ +       L    +L+N      SL D +  

		Sbjct: 132 WGTLAALLLTWVLVALTFIDLDKMLLPDQLT----LPLLWGGLLFNLLGGFVSLGDAVIG 187

		

		Query: 150 G----GISCLFYLLFFIIFRK-GIGLGDIKILIILSTFLGFKIGYYIFFLAIIMGTIILL 204

		                 +    Y  F ++  K G+G GD K+L  L  +LG++    +  L+ ++G  + +

		Sbjct: 188 AMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGI 247

		

		Query: 205 TALMLKKVKKNKQVPFVPYIFVSFLL 230

		             ++L+   ++K +PF PY+ ++  +

		Sbjct: 248 GLILLRNHHQSKPIPFGPYLAIAGWI 273

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 52.0 bits (124), Expect = 1e-08

		 Identities = 33/262 (12%), Positives = 87/262 (33%), Gaps = 3/262 (1%)

		

		Query: 676 KHELGQLAEKIAELNESTREMESAVQLAKDSMAKKREELEETRVIGENLRLQEKELLGKL 735

		             EL      + +  E      +A      ++  ++  L   +    +L    +  +   

		Sbjct: 115 IQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARK---ADLEKALEGAMNFS 171

		

		Query: 736 DRETENLERFNKQLQLYDIEKADGSEELNKLLERKETLLQEQVEIAKQIEVTDEEIKAMT 795

		             ++  ++    +    +  +A+  + L   +        +   +  +          + 

		Sbjct: 172 TADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLE 231

		

		Query: 796 SSSKALESKRAADLESLSSLKAQIAAKREQLQSATEAVERVTTTLHENYEQKEAAEQKLA 855

		            + +   +   AD   + +L+A+ AA   +     +A+E        +  + +  E + A

		Sbjct: 232 KALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKA 291

		

		Query: 856 SLKTNLTSVHTSEETARKSIEELRKDKTETSEKLTQTRQTRAELQEKLELLEAELTQKNN 915

		           +L+     +    +    + + LR+D   + E   Q      +L+E+ ++ EA       

		Sbjct: 292 ALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRR 351

		

		Query: 916 QISFYMEQKNNAEISIGRLEVD 937

		            +    E K   E    +LE  

		Sbjct: 352 DLDASREAKKQLEAEHQKLEEQ 373

		

		

		

		 Score = 48.5 bits (115), Expect = 1e-07

		 Identities = 42/248 (16%), Positives = 98/248 (39%), Gaps = 10/248 (4%)

		

		Query: 669 KSSILTRKHELGQLAEKIAELNESTREMESAVQLAKDSMAKKREELEETRVIGENLRLQE 728

		           K+++  R+ EL +  E     + +       ++  K ++A ++ +LE+      N    +

		Sbjct: 185 KAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 244

		

		Query: 729 KELLGKLDRETENLERFNKQLQLYDIEKADGSEELNKLLERKETLLQEQVEIAKQIEVTD 788

		              +  L+ E   LE    +L+                  + +TL  E+  +  +    +

		Sbjct: 245 SAKIKTLEAEKAALEARQAELEK---ALEGAMNFSTADSAKIKTLEAEKAALEAEKADLE 301

		

		Query: 789 EEIKAMTSSSKALESKRAADLESLSSLKAQIAAKREQLQSATEAVERVTTTLHENYEQKE 848

		            + + + ++ ++L     A  E+   L+A+     EQ + +  + + +   L  + E K+

		Sbjct: 302 HQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKK 361

		

		Query: 849 AAEQKLASLKTNLTSVHTSE-------ETARKSIEELRKDKTETSEKLTQTRQTRAELQE 901

		             E +   L+        S        + +R++ +++ K   E + KL    +   EL+E

		Sbjct: 362 QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEE 421

		

		Query: 902 KLELLEAE 909

		             +L E E

		Sbjct: 422 SKKLTEKE 429

		

		

		

		 Score = 37.7 bits (87), Expect = 3e-04

		 Identities = 26/225 (11%), Positives = 60/225 (26%)

		

		Query: 145 KIDEILNSKPEERRSIFEEAAGVLKYKHRKKQAENKLFETEENLNRVQDILYELEGQLEP 204

		            ++    +    +  + +   G + +          L   +  L   Q  L +       

		Sbjct: 145 TLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMN 204

		

		Query: 205 LEMQASIAKDYLFQQEELEKYEVTLLASEISSLTEKLAEVRKEFGENQTVLIKLREELHA 264

		                S     L  ++         L   +            +    +     L      

		Sbjct: 205 FSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAE 264

		

		Query: 265 EEAVISREKQALNETDIALDKLQERLLVETEKLEQLEGERNLQLERKKHSSENEQVYAET 324

		            E  +             +  L+        +   LE +  +    ++    +     E 

		Sbjct: 265 LEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREA 324

		

		Query: 325 LAVITEKITALEEQKEVLSSSKLEKETALEIAIKSKKVLEATLAK 369

		              +  +   LEEQ ++  +S+      L+ + ++KK LEA   K

		Sbjct: 325 KKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQK 369

		

		

		

		 Score = 37.0 bits (85), Expect = 5e-04

		 Identities = 42/285 (14%), Positives = 86/285 (30%), Gaps = 17/285 (5%)

		

		Query: 760  SEELNKLLERKETLLQEQVEIAKQIEVTDEEIKAMTSSSKALESKRAADLESLSSLKAQI 819

		             E  +K      TL  +  +++   +   +    +T      + K    L       ++ 

		Sbjct: 56   QERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEK----LRKNDKSLSEK 111

		

		Query: 820  AAKREQLQSATEAVERVTTTLHENYEQKEAAEQKLASLKTNLTSVHTSEETARKSIEELR 879

		            A+K ++L++    +E+             A  + L + K  L +     E A +      

		Sbjct: 112  ASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFS 171

		

		Query: 880  KDKTETSEKLTQTRQTRAELQEKLELLEAELTQKNNQISFYMEQKNNAEISIGRLEVDIA 939

		               +   +           L+ +   LEA   +    +   M         I  LE + A

		Sbjct: 172  TADSAKIK----------TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKA 221

		

		Query: 940  NRIDRLQEAYLLTPEQAEEKILSEVNTEQARSKVRLLKRSIDELGIVNIGAIEEFERIQE 999

		                R  +                   +   ++   L+    EL     GA+        

		Sbjct: 222  ALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSA 281

		

		Query: 1000 RFDFLTGQQADL---LAAKETLFKVMDEMDEEMKIRFSESFEAIK 1041

		            +   L  ++A L    A  E   +V++   + ++     S EA K

		Sbjct: 282  KIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK 326

		

		

		

		 Score = 32.7 bits (74), Expect = 0.008

		 Identities = 46/236 (19%), Positives = 90/236 (38%), Gaps = 14/236 (5%)

		

		Query: 678 ELGQLAEKIAELNESTREMESAVQLAKDSMAKKREELEETRVIGENLRLQEKELLGKLDR 737

		           ++  L  + A L     E+E A++ A +       +++        L  ++ +L  +   

		Sbjct: 247 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV 306

		

		Query: 738 ETENLERFNKQLQLYDIEKADGSEELNKLLERKETLLQEQVEIAKQIEVTDEEIKAMTSS 797

		              N +   + L      K     E  KL E+ +     +  + + ++ + E  K + + 

		Sbjct: 307 LNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAE 366

		

		Query: 798 SKALESKRAADLESLSSLKAQIAAKREQLQSATEAVERVTTTLHENYEQKEAAEQKLASL 857

		            + LE +      S  SL+  + A RE    A + VE+            E A  KLA+L

		Sbjct: 367 HQKLEEQNKISEASRQSLRRDLDASRE----AKKQVEK----------ALEEANSKLAAL 412

		

		Query: 858 KTNLTSVHTSEETARKSIEELRKDKTETSEKLTQTRQTRAELQEKLELLEAELTQK 913

		           +     +  S++   K   EL+      ++ L +    +AE   KL   +A  +Q 

		Sbjct: 413 EKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAGKASDSQT 468

		

		

		>FbpA_PF05833#Fibronectin-binding protein

		          Length = 577

		

		 Score =  708 bits (1830), Expect = 0.0

		 Identities = 226/572 (39%), Positives = 346/572 (60%), Gaps = 11/572 (1%)

		

		Query: 1   MAFDAMFLKAMTEELAEHGESGRIMKIHQPFSHELVLYIRKNRENKRLLISSHPSYARIQ 60

		           MA D +FL ++ +EL     +G+I K++QP   E++L IRK R + +LLISS  +Y RI 

		Sbjct: 1   MALDGIFLYSIIDELKNTIINGKIDKVNQPEKDEIILNIRKGRLSFKLLISSSSNYPRIH 60

		

		Query: 61  WTDDIPENPATPPMFCMLLRKYLEGAIIESITQLPNERILQFSIRGKDDIGENRFCDLFV 120

		            TD    NP   PMFCM+LRKY+  A I  I Q+  +RI+       D++G N    L +

		Sbjct: 61  LTDLTKPNPIKAPMFCMVLRKYISNAKIVDIHQINQDRIVVIDFESTDELGFNSIYSLII 120

		

		Query: 121 EIMGRHSNITLVDRAKNVIVDCIKHVSPAQNSYRTLLPGATYVLPPATDKLNPFEVTSEQ 180

		           EIMGRHSN+TL+ +  N+I+D IKH++P  N+YR++ PG  YV PP + KLNPF+ + + 

		Sbjct: 121 EIMGRHSNMTLIRKRDNIIMDSIKHITPDINTYRSIYPGIEYVYPPKSPKLNPFDFSYDM 180

		

		Query: 181 ILDRLDFSAGRIDKQ-LVQNFAGFSPLLAREIVFRAGNLTADSLVAAFFEVMGLVND--- 236

		           I +    ++ +++     + F G S  L+ EI FR  N + D  ++   E++ +  D   

		Sbjct: 181 IENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVEVCKDLFK 240

		

		Query: 237 HLGSAAVPNEWRIQNKEDYYFFSLRHV---DAEITEFANLSTLLDHFYIGKARRDRVHQF 293

		            + S         +N     F+ L  +   D +  ++ + S LL++FY  K + DR+   

		Sbjct: 241 EIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAKDKSDRLKSK 300

		

		Query: 294 AHDLEKLLSNELARSRLKIEKLENTLLETEKADVYRIQGELLTANLHLMERGMEEITVEN 353

		           + DL+K++ N + R   K + L NTL + E  D++++ GELLTAN++ +++G+  I + N

		Sbjct: 301 SSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYALKKGLSHIELAN 360

		

		Query: 354 FYDD-MKKMTIPLDTRKTPSANAQSYFSRYQKLRNAVEVVKEQIALTKEEITYLESVESQ 412

		           +Y +    + I LD  KTPS N QSY+ +Y KL+ + E   EQ+   +EE+ YL SV + 

		Sbjct: 361 YYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTN 420

		

		Query: 413 LETSGPQD-VEEIRQELAEQGYLRYKQKKGSRKKATLPAPEKYTSSTGLTILVGKNNKQN 471

		           +  +   D +EEI++EL E GY+++K+   S+K  T   P  + S  G+ I VGKNN QN

		Sbjct: 421 INNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSK-PMHFISKDGIDIYVGKNNIQN 479

		

		Query: 472 DYLTNKLARNNEYWFHVKDLPGSHVVIQSN-NPDETSITEAAMIAAYYSKARLSATVPVD 530

		           DYLT K A  ++ WFH K++PGSHV++++  +  E+++ EAA +AAYYSK++ S+ VPVD

		Sbjct: 480 DYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIPESTLLEAANLAAYYSKSQNSSNVPVD 539

		

		Query: 531 GTLVKHVKKPNGAKPGYVIYDNQTTYFVTPDE 562

		            T VK+VKKPNGAKPG VIY    T +VTP  

		Sbjct: 540 YTEVKNVKKPNGAKPGMVIYSTNQTIYVTPTN 571