>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 28.9 bits (64), Expect = 0.032 Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 19/121 (15%) Query: 37 GGVFRATEGLQKKYGDQRVWDSPISEGGIAGSAVG-----ASAAGLRPVVEIQFSGFSFP 91 GG +RA GL+ + + S G G VG A ++P ++ F Sbjct: 795 GGAYRAANGLRVRD------EGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQ-EFD 847 Query: 92 AMNQIFTNAARYRTRSHGVYSCPMVVRMPCGGGVKALEHHSEALEAIYSHVPGLKVIMPS 151 + TN +RT G R G G+ A +L A Y + G K+ MP Sbjct: 848 GAGTVHTNGIAHRTELRG-------TRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPW 900 Query: 152 T 152 T Sbjct: 901 T 901
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 29.2 bits (65), Expect = 0.019 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 7/87 (8%) Query: 1 MKKIKFLLASFATSLAAIPFIAAKCGITDDSKKPTETPAENPALAKVKEAWNNNIKDKIS 60 MKK K +L + A +P +A CG D+S + ++K N N K + Sbjct: 1 MKKSKKILLGLSPIAAILPAVAVSCGNNDESN----ISFKEKDISKYTTT-NANGKQVVK 55 Query: 61 SAKNYTMILTMLKD--SITDASLKESI 85 +A+ + ++ D I D S +S Sbjct: 56 NAELLKLKPVLITDEGKIDDKSFNQSA 82
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 80.7 bits (199), Expect = 2e-18 Identities = 73/313 (23%), Positives = 119/313 (38%), Gaps = 54/313 (17%) Query: 13 VNIGTIGHVDHGKTTLTAAIATVLAKKGLSEAKSYDA----IDNAPEEKARGITINTSHI 68 +NIG + HVD GKTTLT ++ + ++E S D DN E+ RGITI T Sbjct: 4 INIGVLAHVDAGKTTLTESL--LYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 EYNTEKRHYAHVDCPGHADYIKNMITGAAQMDGSILVVAATDGAMPQTKEHVLLAKQVGV 128 + E +D PGH D++ + + +DG+IL+++A DG QT+ +++G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PKMVVFLNKCD----------------------------------MIKPEDAEMIDLVEM 154 P + F+NK D + ++E D V Sbjct: 122 PT-IFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180 Query: 155 EVRELLTKYGFDGD-----------NTPFVRGSALQALQGKPEYEENILELMNAVDTWIE 203 +LL KY G + F S G + I L+ + Sbjct: 181 GNDDLLEKY-MSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFY 239 Query: 204 TPVKDFEKPFLMAVEDVFTISGRGTVATGRVERGRLSLNEEVEIVGLKPTKKT-VVTGIE 262 + + V + R +A R+ G L L + V I + K T + T I Sbjct: 240 SSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSIN 299 Query: 263 MFRKNLKEAQAGD 275 + +A +G+ Sbjct: 300 GELCKIDKAYSGE 312
>cloacin#Cloacin signature. Length = 551 Score = 33.1 bits (75), Expect = 0.003 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 6/103 (5%) Query: 97 NNRDGNNGSNN--GNSNNSSNSNGNNGNNINIPGNSNTPT-NSDGRNNNSASGNRDGNNG 153 + R N G+++ GN N G G + G S+ G + G G +G Sbjct: 5 DGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG---GGSG 61 Query: 154 SNSGDRSSNNGSNSGIDPNKNPYADPFSEKWPADNSSGNNGIS 196 +G + N+G SG N + A P + +PA ++ G G++ Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 30.6 bits (69), Expect = 0.021 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 7/90 (7%) Query: 369 SRVARRKDKEEKRLTKSISKNKNKLDKTNNKLEN----KLLKTQEKLLKA--KNTKEENK 422 R+ + +K + +I++ K NN L+ + K +LL A K+ Sbjct: 295 DRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYALKKGLS 354 Query: 423 LNKVFDKTKNKLDKTNVKLDNKLNKQE-AQ 451 ++ + D + LD + Q Sbjct: 355 HIELANYYSENYDTVKITLDENKTPSQNVQ 384
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.0 bits (67), Expect = 0.027 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 2/113 (1%) Query: 8 AYKNKLEALSRKIDKEVNNVNDIRKEIAKLIEQIQKIKFEIEIKKIENTSSVLTEKLFDE 67 + + + I + NN N + + E ++K + + +I++ F + Sbjct: 300 RINADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIKDAVDATVS--FYQ 357 Query: 68 SDADKIKDAERRYAKELADKLKVYNNHRTKSANATVELFSNEWLREIEKAKRD 120 + +K + + A+ELADK K A A E + + ++ KA RD Sbjct: 358 TLTEKYGEKYSKMAQELADKSKGKKIGNVNEALAAFEKYKDVLNKKFSKADRD 410
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 47.8 bits (113), Expect = 1e-07 Identities = 45/321 (14%), Positives = 106/321 (33%), Gaps = 17/321 (5%) Query: 255 KQYEAYISNLKNELETNKKSIEKKIAENKSKLNYLEK---EKLVKAKVELAETKESKKDI 311 K + +S L+ + + ++++ K KL +K EK K + A + +K + Sbjct: 70 KLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKAL 129 Query: 312 LDLLEGAKEEKSNYESEAKIANEEVAKIKVFGDKIDALEKQIKESEAKIEKISSDVKKKD 371 + + + + ++ A+ ++ AKI+ + ++ + Sbjct: 130 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 189 Query: 372 VFSQLLKSFYQSSYELKKQIKYLEDRIKDKNSNNFSEEFYFNNEVKFNYELISEWNKAIE 431 L+ + + ++ + + + + ++ + + I+ Sbjct: 190 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIK 249 Query: 432 RDNEELTELQNEINTFLKVNAKAIEEINKLIDEANKEGHNKDNLASELEKLNEQVKALTK 491 E L+ K A+ + K L +E L Q + L Sbjct: 250 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNA 309 Query: 492 NSKDWRTYLDSKSKEAEKYNDNVATYDKDIEKLNVHMATGEKEEAAGTQVVKEAEEDLAQ 551 N + R LD+ + ++L E++ + DL Sbjct: 310 NRQSLRRDLDASREA--------------KKQLEAEHQKLEEQNKISEASRQSLRRDLDA 355 Query: 552 LKEEERKLESELAKLLEKEKI 572 +E +++LE+E KL E+ KI Sbjct: 356 SREAKKQLEAEHQKLEEQNKI 376
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.9 bits (64), Expect = 0.015 Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 11/189 (5%) Query: 8 TLPVLFTFPIVSASCTDINQNNSTAENKKPDSNEKIKVDNATTNNANSNENKNDGRSKTE 67 PV P + T+ NS E+K + NE+ + N + E K++ ++ T+ Sbjct: 1022 EAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQ 1081 Query: 68 QPSKDQAETYSTSNVNKQKEEMLKKLKEELPKLKEKKVELEKTIE------ETKPTEEQL 121 Q+ + + + +E KEE + KVE EKT E + P +EQ Sbjct: 1082 TNEVAQSGSETKETQTTETKETATVEKEE-----KAKVETEKTQEVPKVTSQVSPKQEQS 1136 Query: 122 KKAWQDIENKANTSPSEYDESKLKEAYEKWLTVYDKLTNAKNELEILTKSKMIEQTEQAI 181 + E P+ + + T + N + +T+S + + Sbjct: 1137 ETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVV 1196 Query: 182 EKLETKLKA 190 E E A Sbjct: 1197 ENPENTTPA 1205
>SALVRPPROT#Salmonella virulence-associated 28kDa protein signature. Length = 241 Score = 28.9 bits (64), Expect = 0.022 Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 79 ELRKGKEDIEAARKALSTRPFYAMM 103 ELR G++ E R+AL PFY +M Sbjct: 215 ELRSGRDGGEMQRQALLEEPFYRLM 239
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 418 bits (1077), Expect = e-148 Identities = 185/399 (46%), Positives = 264/399 (66%), Gaps = 8/399 (2%) Query: 4 KVLVINAGSSSIKLQLLDKEKLNVIASGLAERIGESGNGNIAIKFNGQKFEKSVKLDDHA 63 K+LVIN GSSS+K QL++ + NV+A GLAERIG + + + NG+K + + DH Sbjct: 2 KILVINCGSSSLKYQLIESKDGNVLAKGLAERIGIN-DSLLTHNANGEKIKIKKDMKDHK 60 Query: 64 KAVEYILEIF--EENKIITDPKEIELIGFRVVQGGEYFNSSVKLGDKEIELIDEVKMYAP 121 A++ +L+ + +I D EI+ +G RVV GGEYF SSV + D ++ I + AP Sbjct: 61 DAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAP 120 Query: 122 LHNPGALQAIRAFKKVMPHAKLSADFDTAFHTSIPALYATYPIPYEISEKLKIKRYGAHG 181 LHNP ++ I+A ++MP + A FDTAFH ++P YPIPYE K KI++YG HG Sbjct: 121 LHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHG 180 Query: 182 ISHEYITLKVQELLNK--EKVNIINLHIGNGASLCAIKESKSIDTTMGLTPLAGIMMGSR 239 SH+Y++ + E+LNK E + II H+GNG+S+ A+K KSIDT+MG TPL G+ MG+R Sbjct: 181 TSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTR 240 Query: 240 SGDIDPSIHQFVMKNMNLSIDEFTDILNKKSGMLGVSGISNDLRDIL-AAMEKGDKRAQF 298 SG IDPSI ++M+ N+S +E +ILNKKSG+ G+SGIS+D RD+ AA + GDKRAQ Sbjct: 241 SGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQL 300 Query: 299 AFDLYCQKIVDFVANYANKLENKIDTIVFTAGVGENTPELREQVVNSLHFTNIKLDKNKN 358 A +++ ++ + +YA + +D IVFTAG+GEN PE+RE +++ L F KLDK KN Sbjct: 301 ALNVFAYRVKKTIGSYAAAM-GGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKN 359 Query: 359 FGKIGEYELISTPDSDVKVYVIRTNEELLIAKHAIELYK 397 + GE +IST DS V V V+ TNEE +IAK ++ + Sbjct: 360 KVR-GEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIVE 397
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 123 bits (310), Expect = 5e-39 Identities = 39/137 (28%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Query: 3 SAIYPGSFDSMHEGHIAIVKKALKIFDKLFVIVSVNPDKESVSDIDKRFVEAKEKLKEFK 62 +AIYPGSFD + GH+ I+++ ++FD+++V V NP+K+ + + +R + + + Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 63 NVEVLINKDGLIAEIAKKLGANFLVRSARNNIDFQYELVLAAGHNSMNKDLETILIMPDY 122 N +V +GL A++ A ++R R DF+ EL +A + ++ DLET+ + Sbjct: 62 NAQVDSF-EGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTST 120 Query: 123 DMIEYSSTVIRHKNKLG 139 + SS++++ + G Sbjct: 121 EYSFLSSSLVKEVARFG 137
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 134 bits (340), Expect = 4e-37 Identities = 75/356 (21%), Positives = 143/356 (40%), Gaps = 49/356 (13%) Query: 7 IGIDLGTTNSVV-----SIVDNGSPVVLENLNGKRTTPSVVSFKDGEIIVGDNAKNQIET 61 + IDLGT N+++ IV N VV + + SV + VG +AK + Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA-------VGHDAKQMLGR 65 Query: 62 NPDTVASIKRLMGTSKTVHVNNKDYKPEEISAMILEH-LKKYAEEKIGHKVEKAVITVPA 120 P +A+I+ + V + ++ +L+H +K+ + ++ VP Sbjct: 66 TPGNIAAIRPM---KDGVIAD------FFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPV 116 Query: 121 YFDNAQREATKIAGKIAGLEVLRIINEPTAAALAFGLDKVKKEQKILVFDLGGGTFDVSI 180 +R A + + + AG + +I EP AAA+ GL V + +V D+GGGT +V++ Sbjct: 117 GATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGL-PVSEATGSMVVDIGGGTTEVAV 175 Query: 181 LELAEGTFEVLSTAGDNRLGGDDWDNEIVKWLIDLIKKDYKTDVTNNKMAMARLKAAAEK 240 + L + R+GGD +D I+ ++++Y +A AE+ Sbjct: 176 ISLNGVV-----YSSSVRIGGDRFDEAIIN----YVRRNYG---------SLIGEATAER 217 Query: 241 AKIDLSSS----QQATIMLPFLVMQQGSEPISVEATLR--RSQFEEMTSHLVERCRKPIE 294 K ++ S+ + I + + +G P +E + +V +E Sbjct: 218 IKHEIGSAYPGDEVREIEVRGRNLAEGV-PRGFTLNSNEILEALQEPLTGIVSAVMVALE 276 Query: 295 TALADAKIKISDLDDVILVGGSTRIPAVQQLVESILNKKANRSVNPDEVVAMGAAI 350 + IS+ ++L GG + + +L+ + +P VA G Sbjct: 277 QCPPELASDISE-RGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGK 331
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 34.3 bits (78), Expect = 7e-04 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 4/74 (5%) Query: 10 GSVASMAAIPFVAAKCGGTKEENKKPAEMPGGTEQPGKPGDTDQPAQPN----PGTTPST 65 GS + A P N P E PG P D + A P+ PGT P + Sbjct: 318 GSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDS 377 Query: 66 PAKPGKTPERMAQD 79 PA P + R ++ Sbjct: 378 PAVPDRPNGRHRKE 391
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 30.0 bits (67), Expect = 0.014 Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 15/113 (13%) Query: 1 MKKSKFVLLGSVASLVSIPFVAAKCGGTKDEEKKPADTQGRGQKNPGDNQNSGTENGGNS 60 MKKSK +LLG +P VA CG + + N +N Sbjct: 1 MKKSKKILLGLSPIAAILPAVAVSCGNNDESNISFKEKDISKYTTTNANGKQVVKNAELL 60 Query: 61 NGNSATTNEKKSLSVLISNENQQLGEIKKKD-KDSILDALLAKNKALNLDKSQ 112 VLI++E G+I K S +AL A NK ++ + Sbjct: 61 KLK----------PVLITDE----GKIDDKSFNQSAFEALKAINKQTGIEINN 99
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 33.2 bits (75), Expect = 9e-04 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 4/74 (5%) Query: 10 GSVASMAAIPFVAAKCGGTKEENKKPAEMPGGTEQPGKPGDTDQPAQPN----PGTTPST 65 GS + A P N P E PG P D + A P+ PGT P + Sbjct: 318 GSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDS 377 Query: 66 PAKPGKTPERMAQD 79 PA P + R ++ Sbjct: 378 PAVPDRPNGRHRKE 391
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 33.4 bits (76), Expect = 0.001 Identities = 39/172 (22%), Positives = 60/172 (34%), Gaps = 30/172 (17%) Query: 1 MKKSKFLLLGSLFSLAAIPFVAAKCGGTKEEGNKNPADTQGGGQTDSTPSTSTTVDLSKL 60 MKKSK +LLG A +P VA C G D + + D+SK Sbjct: 1 MKKSKKILLGLSPIAAILPAVAVSC-----------------GNNDESNISFKEKDISKY 43 Query: 61 DQTIQAQLNKLAKDGVKKEEVL---VILKTVEGLKDIKAEDLSTVEFKDK-----KLVIA 112 T N K VK E+L +L T EG D K+ + S E + I Sbjct: 44 TTT-----NANGKQVVKNAELLKLKPVLITDEGKIDDKSFNQSAFEALKAINKQTGIEIN 98 Query: 113 AKEGSKLVSGKYEFSAQSESDTLMESNKIDLNKLEESVKQELNKLAKNNVLF 164 E S Y + + + + +++ + +L +N + Sbjct: 99 NVEPSSNFESAYNSALSAGHKIWVLNGFKHQQSIKQYIDAHREELERNQIKI 150