>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.040 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEANARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQDMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 39.3 bits (91), Expect = 1e-05 Identities = 44/264 (16%), Positives = 81/264 (30%), Gaps = 6/264 (2%) Query: 10 GFYQVREELEARISELEDENENLINENTRLLASKEQLTKENTELLREKDNLIKENTELKT 69 F L+ + S+L N+ L + N L ++ + + + EL+ Sbjct: 61 KFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEA 120 Query: 70 DKDNLNNQLNASQMQVNELKNAHQVLEKEKDELLKDKDNLTKEKAELTEKNQKLTTEKDN 129 K +L L + + LE EK L K +L K + + + Sbjct: 121 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 180 Query: 130 LTKANAELKKENDKLNHQVIALTKEQDSLKYEKELCANLEKDNQQLTDKLKKLESTQKNL 189 L A L+ +L L + + LE + L + LE + Sbjct: 181 LEAEKAALEARQAELEKA---LEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGA 237 Query: 190 ENSKNQLLQAREKIAKENTELEREMARLKSLEATDKSELDLQNRRFKSA---IEDLKRQN 246 N + + E LE A L+ + + + K+ L+ + Sbjct: 238 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEK 297 Query: 247 RKLEEENIALKERVDGLKEQLSKQ 270 LE ++ L L+ L Sbjct: 298 ADLEHQSQVLNANRQSLRRDLDAS 321 Score = 34.3 bits (78), Expect = 4e-04 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 4/210 (1%) Query: 13 QVREELEARISELEDENENLINENTRLLASKEQLTKENTELLREKDNLIKENTELKTDKD 72 + E + + + L E L A K L K + + L+ +K Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186 Query: 73 NLNNQLNASQMQVNELKNAHQVLEKEKDELLKDKDNLTKEKAELTEKNQKLTTEKDNLTK 132 L + + + N + L +K L KA+L + + + Sbjct: 187 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 246 Query: 133 ANAELKKENDKLNHQVIALTKE----QDSLKYEKELCANLEKDNQQLTDKLKKLESTQKN 188 L+ E L + L K + + LE + L + LE + Sbjct: 247 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV 306 Query: 189 LENSKNQLLQAREKIAKENTELEREMARLK 218 L ++ L + + + +LE E +L+ Sbjct: 307 LNANRQSLRRDLDASREAKKQLEAEHQKLE 336 Score = 32.3 bits (73), Expect = 0.002 Identities = 45/249 (18%), Positives = 88/249 (35%), Gaps = 14/249 (5%) Query: 26 EDENENLINENTRLLASKEQLTKENTELLREKDNLIKENTELKTDKDNLNNQLNASQMQV 85 D E + + L +N++L L N EL + N +L + + Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 86 NELKNAHQVLEKEKDELLKDKDNLTKEKAELTEKNQKLTTEKDNLTKANAELKKENDKLN 145 +E + Q LE K +L K + + K + L EK L A+L+K + Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 168 Query: 146 HQVIALTKEQDSLKYEKELCANLEKDNQQLTDKLKKLESTQKNLENSKNQLLQAREKIAK 205 + A + + +L+ EK A LE +L L+ + L + +A Sbjct: 169 NFSTADSAKIKTLEAEK---AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAA 225 Query: 206 ENTELEREMARLKSLEATDKSELDLQNRRFKSAIEDLKRQNRKLEEENIALKERVDGLKE 265 +LE+ + + D +++ + L+ + LE L++ ++G Sbjct: 226 RKADLEKALEGAMNFSTADSAKI-----------KTLEAEKAALEARQAELEKALEGAMN 274 Query: 266 QLSKQPKPQ 274 + Sbjct: 275 FSTADSAKI 283
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1042 bits (2695), Expect = 0.0 Identities = 354/569 (62%), Positives = 442/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYASMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR YA+M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDTQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN D Q GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKF 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSVNLGFLAKGNASNDASLADQIEAGAIGLKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + +NL F KGNAS +L + + GA LK+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTYHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H YHTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKNIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNS 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+ Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.9 bits (64), Expect = 0.019 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 123 GEELTTREKGFKAVKEFLNEQLENIDLNYPNLVVAYEPIWAIGTKKS----ASLEE 174 E TT K F +K+ LN +L N + N N + EPI+A KK ASLEE Sbjct: 855 QAEATTLSKNFSDIKKELNAKLGNFN-NNNNNGLKNEPIYAKVNKKKAGQAASLEE 909
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.4 bits (146), Expect = 6e-13 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKSLYDSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.8 bits (106), Expect = 3e-07 Identities = 55/271 (20%), Positives = 104/271 (38%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLISLESIAKISFGLIALSFLICYFD 87 L+ S +T H L + LM + L LS + +S A+ + I Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKRALVGGFIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + ++RA GF+ + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLIGLKN-HSLKKKSVKKEESAFKIPFHL----- 200 + ++ + + F+ L H +++ +++E F Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLISCALNAIGFLPHTLFWVDYLIRHLNISPTIAGTSWAFFG-FGATLGSLISGP 256 L+ + + +G +P L WV + + T G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILVLKSIACFLPIFFHQI 287 +A +LG + A + ++ L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 65.5 bits (159), Expect = 3e-13 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 8/212 (3%) Query: 162 LPTLNAQEEKEEVKEEVKETPQEEEKSKDDEIQEGETLKDKEVSKELGTQEELKIPKEET 221 P+ + E K+E K + E+ + + Q E K+ + + + TQ Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 222 QEQAKEQEPIKEEMQEELEIPKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQEN-- 279 ++ + E + E+ E K ET++ +E + +Q SP ++ E +Q + +EN Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 280 --SNGQEDKKETQELETLQETEKQELETPQELETQESAEIPQENTETPQETL----QETE 333 + + + +T Q ++ Q + + E P+ T Q T Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTV 1211 Query: 334 KQELETPQELKTPQELKIPQELKTPQELKTPQ 365 E + + + ++ P + Sbjct: 1212 NSESSNKPKNRHRRSVRSVPHNVEPATTSSND 1243 Score = 62.0 bits (150), Expect = 4e-12 Identities = 47/273 (17%), Positives = 109/273 (39%), Gaps = 21/273 (7%) Query: 252 EKQEKTQDSPSAQELEAMQELVKEIQENSNGQEDKKETQELETLQETEKQELETPQELET 311 EK+ +T D+ + +Q V + N+ E + ++ + P Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNN------------EEIARVDEAPVPPPAPATP 1033 Query: 312 QESAEIPQENTETPQETLQETEKQELETPQELKTPQELKIPQELKTPQELKTPQELKTPQ 371 E+ E EN++ +T+++ E+ ET T Q ++ +E K+ + T Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATET-----TAQNREVAKEAKSNVKANTQTNEVAQS 1088 Query: 372 ELKTPQELKTPQEKETQELETPQESAETPQESAETPQKETPQKETQEKEAQEKKAQEKKA 431 +T +E +T + KET +E +++ +++ E P+ + QE+ + E Sbjct: 1089 GSET-KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR 1147 Query: 432 QEDHYESIEDIPEPVMAQAMGEELPFLSEAVAKIPNNENDTETLKESVIKTPQEKEESDK 491 + D +I++ A E+ + + + P E+ T SV++ P+ + Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Query: 492 NSSPLELRLNLQDLLKSLNQESLKNLLENKTLS 524 + + K+ ++ S++++ N + Sbjct: 1208 QP---TVNSESSNKPKNRHRRSVRSVPHNVEPA 1237 Score = 60.1 bits (145), Expect = 2e-11 Identities = 48/256 (18%), Positives = 90/256 (35%), Gaps = 19/256 (7%) Query: 194 QEGETLKDKEVSKELGTQEELKIPKEETQEQAKEQEPIKEEMQEELEIPKEETQEIKE-- 251 + +T+ ++ Q ++ +E A+ E P E T+ + E Sbjct: 987 KRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPAT--PSETTETVAENS 1044 Query: 252 -------EKQEKTQDSPSAQE----LEAMQELVKEIQENSNGQ--EDKKETQELETLQET 298 EK E+ +AQ EA + Q N Q + KETQ ET +ET Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET-KET 1103 Query: 299 EKQELETPQELETQESAEIPQENTET-PQETLQETEKQELETPQELKTPQELKIPQELKT 357 E E ++ET+++ E+P+ ++ P++ ET + + E +E +K PQ Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 358 PQELKTPQELKTPQELKTPQELKTPQEKETQELETPQESAETPQESAETPQKETPQKETQ 417 +T ++ P T +E P+ + + + K Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223 Query: 418 EKEAQEKKAQEKKAQE 433 + + + A Sbjct: 1224 RRSVRSVPHNVEPATT 1239 Score = 40.8 bits (95), Expect = 1e-05 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 26/198 (13%) Query: 147 LKALVQEEPNNEEQLLPTLNAQEEKEEVKEEVKETPQ--EEEKSKDDEIQEGETLKDKEV 204 K N + + E KE E KET +EEK+K + Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVE------------- 1115 Query: 205 SKELGTQEELKIPKEETQEQAKEQEPIKEEMQEELEIPKEETQEIKEEKQEKTQDSPSAQ 264 T++ ++PK +Q K+++ + Q E + T IKE + + + + Q Sbjct: 1116 -----TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170 Query: 265 ELEAMQELVKEIQENSNGQEDKKETQELETLQETEKQELETPQELETQESAEIPQE-NTE 323 + V+ Q + +E + T T Q ES+ P+ + Sbjct: 1171 PAKETSSNVE--QPVTESTTVNTGNSVVENPENTTP---ATTQPTVNSESSNKPKNRHRR 1225 Query: 324 TPQETLQETEKQELETPQ 341 + + E + Sbjct: 1226 SVRSVPHNVEPATTSSND 1243 Score = 30.0 bits (67), Expect = 0.033 Identities = 17/131 (12%), Positives = 32/131 (24%), Gaps = 1/131 (0%) Query: 152 QEEPNNEEQLLPTLNAQEEKEEVKEEVKETPQEEEKSKDDEIQEGETLKDKEVSKELGTQ 211 Q P E+ A+ +E + PQ + + D Q + + Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 212 EELKIPK-EETQEQAKEQEPIKEEMQEELEIPKEETQEIKEEKQEKTQDSPSAQELEAMQ 270 E E E PK + + + ++ + Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247 Query: 271 ELVKEIQENSN 281 L N+N Sbjct: 1248 ALCDLTSTNTN 1258
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (486), Expect = 3e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLIYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.009 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 30 VVALLGESGAGKSTILRILAGLE 52 V L G G GKST++ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 196 bits (501), Expect = 3e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPANPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 26.6 bits (59), Expect = 0.021 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%) Query: 27 NLADKRYDSLGLIGAGVLCCVLSGAIGIVGII--FVAIGIFLS-------FSNINLVKLV 77 + A L+ LC L ++ I V G +S IN ++ Sbjct: 69 SQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGA 128 Query: 78 EKLFKKQS 85 +++F +S Sbjct: 129 KRIFSIKS 136
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.025 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 277 APENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQ--------EAELAKY--KLKDLE 326 S + EE+ E +E L K E ++ +Y K+ +LE Sbjct: 44 GTLQSIADMAEEVTF-----VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELE 98 Query: 327 NQKKLKALEAELKKKN 342 ++ + L + L Sbjct: 99 QKQNVSELLSLLSNSP 114
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.5 bits (102), Expect = 9e-06 Identities = 39/260 (15%), Positives = 89/260 (34%), Gaps = 33/260 (12%) Query: 581 TPEAKKLLEEEAKESVKAYLDCVSQAKTETEKKECEKLLTPEARKKLEEAKKSVKAYLDC 640 P ++ + + ++KT + ++ T + R+ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 641 VSQAKTETEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAK 700 A++ +E KE + T E + +++ AK E EK + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKT---------------QE 1121 Query: 701 ESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSQARTEAEKKEC 760 + + ++E + + E + ++E + SQ T A+ ++ Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ----------SQTNTTADTEQP 1171 Query: 761 EKLLTPEAKKLLEEEAKESVKAYLDCISQAKTETEKKECEKLLTPEARKKLEEAKKSVKA 820 K + ++ + E + + + T + + K ++SV++ Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK--NRHRRSVRS 1229 Query: 821 YLDCVSQAKTETEKKECEKL 840 V A T + + L Sbjct: 1230 VPHNVEPATTSSNDRSTVAL 1249 Score = 37.7 bits (87), Expect = 5e-04 Identities = 30/187 (16%), Positives = 67/187 (35%), Gaps = 4/187 (2%) Query: 497 KARNEEERKACEKLLTPEAKKLLERQALDCLKNAKTEAE--KKRCVKDLPKDLQSDILAK 554 + NEE + E + P A +N+K E++ +K Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 555 ESVKAYRDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTETEKKE 614 E+ + E ++ T E K+ E +E K + + T + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 615 CEKLLTPEARKKLEEAKKSVKAYL--DCVSQAKTETEKKECEKLLTPEAKKLLEQQALDC 672 ++ + + + E A+++ + SQ T + ++ K + ++ + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 673 LKNAKTE 679 N+ E Sbjct: 1191 TGNSVVE 1197 Score = 37.4 bits (86), Expect = 7e-04 Identities = 38/242 (15%), Positives = 81/242 (33%), Gaps = 4/242 (1%) Query: 724 KLLTPEAKKL--LEEAKESLKAYKDCVSQARTEAEKKECEKLLT-PEAKKLLEEEAKESV 780 L PE +K + + +E ++ P ++ + Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 781 KAYLDCISQAKTETEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKTETEKKECEKL 840 + ++KT + ++ T + R+ +EAK +VKA A++ +E KE + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 841 LTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSRARNE 900 T E + +++ KT+ K + PK Q + + ++ A ++ + E Sbjct: 1099 ETKETATVEKEEKAKVET-EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 901 KEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSQARNEEERKACEKLLTPEARKKLEEAK 960 + + T + K E V+ + E T + E + Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 961 KS 962 K Sbjct: 1218 KP 1219 Score = 34.7 bits (79), Expect = 0.004 Identities = 37/214 (17%), Positives = 75/214 (35%), Gaps = 6/214 (2%) Query: 934 QARNEEERKACEKLLTPEARKKLEEAKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKL 993 + NEE + E + P A E ++V S+ + E+ E T + +++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET--TAQNREV 1068 Query: 994 LEEAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSR-ARN 1052 +EAK ++KA A++ E K + T E + ++E K V + Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 1053 EKEKQECEKLLTPEARKFLAKQALSCLEKARNEEERKACLKNIPKDLQKDVLAKESLKAY 1112 KQE + + P+A +++ +++ A + K+ +V + Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 1113 KDCLSQ-ARNEEERKACEKLLTPEARKLLEQEVK 1145 + + N E P + K Sbjct: 1189 VNTGNSVVENPENTTPATT--QPTVNSESSNKPK 1220 Score = 32.0 bits (72), Expect = 0.026 Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 10/201 (4%) Query: 643 QAKTETEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAE--KKRCVKDLPKDLQKKVLAK 700 + E + E + P A + +N+K E++ +K Q + +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 701 ESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLL-----EEAKESLKAYKDCVSQARTEA 755 E+ K + E ++ T E K+ E+AK + ++ + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 756 EKKECEKLLTPEAKKLLEEEAKESVKAYLDCISQAKTETEKKECEKLLTPEARKKLEEAK 815 K+E + + P+A+ E + ++K SQ T + ++ K + + + E+ Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQ---SQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 816 KSVKAYLDCVSQAKTETEKKE 836 + T + Sbjct: 1188 TVNTGNSVVENPENTTPATTQ 1208 Score = 32.0 bits (72), Expect = 0.029 Identities = 35/241 (14%), Positives = 84/241 (34%), Gaps = 17/241 (7%) Query: 858 KNAKTEAEKKRCVKDLP-KDLQKKVLAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKK 916 + + E+ V + P ++ + ++ ++ ++ ++ T + ++ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 917 LLEEAKESLKAYKDCVSQARNEEERKACEKLLT--PEARKKLEEAKKSVKAYLDCVSRAR 974 + +EAK ++KA A++ E K + T +K E+AK + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 975 NEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQ 1034 K+E + + P+A+ E + + +++ A + E +EQ Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVN------IKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 1035 EVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQALSCLEKARNEEERKACLKN 1094 V +S + E + TP + S K R+ ++ N Sbjct: 1182 PVTES--------TTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHN 1233 Query: 1095 I 1095 + Sbjct: 1234 V 1234
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 869 bits (2246), Expect = 0.0 Identities = 512/522 (98%), Positives = 514/522 (98%) Query: 1 MEQAFFKKIVGCFCLGYLFLSSVIEAAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 M QAFFKKIVGCFCLGYLFLSS IEA A DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EETVKQRAKDKINIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EE V+QRAKDKI+IKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEGELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 NFASAYLTVKLEYPQRHEVSSVIE ELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (298), Expect = 6e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNIAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIRREKVKNSPLTRLTFFITIKITPDTMENYEYITKKEVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.4 bits (73), Expect = 0.002 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKKLVALGFKKIKTLYQRHDDKEVTEEEKKFATNALREKLRNDRARAEQI 83 A+N AL+ +Y++ + K K + D KE+ E++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSIQKKATKHKGLQELNETNANPLNGNPNSNSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.7 bits (72), Expect = 0.017 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAVVIVLVALG 98 + L + LF Q LI + + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>PF07132#Harpin protein (HrpN) Length = 356 Score = 35.4 bits (81), Expect = 2e-05 Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 36 FWGEAVGAGMGGAMGGMIGSLGGPWSTVVGASIGGGIGAYSGAEIG 81 F G +G G+GG +GG+ SLGG ++G +GGG+G+ G+ +G Sbjct: 60 FMGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLG 105 Score = 27.4 bits (60), Expect = 0.014 Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 33 LGRFWGEAVGAGMGGAMGGMIGSLGGPWSTVVGASIGGGIGAYSGAEIGD 82 +G G +G G+GG + G GG +G +G +G+ G+ +G Sbjct: 61 MGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGG 110
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (707), Expect = 3e-96 Identities = 113/245 (46%), Positives = 162/245 (66%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLIYPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 0.001 Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 15/228 (6%) Query: 346 ELEQSKESVLKPLNQNANAFKQEQKNAEKIESAEKIEKPEKKENTETPQTPMLSAKDRIF 405 E+ + E+ + P A + + AE + K + +++ TET AK+ Sbjct: 1016 EIARVDEAPVPPP-APATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEA-K 1073 Query: 406 HNLFKQVQTLVYERNYELGAVFEKNIRFIDFDSQTKTLTWESLATHKDKELLRERFKI-- 463 N+ QT V + + + T K K + ++ Sbjct: 1074 SNVKANTQTN---------EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPK 1124 Query: 464 VKSIVDGVFGKGETIKIALKNHSENKSALEVVKEFKFPYSKPKPTTETMAEMKEKDTKEA 523 V S V + ET++ + EN +KE + + TE A+ + ++ Sbjct: 1125 VTSQVSPKQEQSETVQPQAEPARENDPT-VNIKEPQSQTNTT-ADTEQPAKETSSNVEQP 1182 Query: 524 AEKETKENDTREVQETQPKETPTALQEFMANHSDLIEEIKSEFEIKSV 571 + T N V E TP Q + + S + + ++SV Sbjct: 1183 VTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSV 1230
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 645 GNVFSQTGNSGQALIGAANTGR--RGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKA 702 ++ S GN L ++ T +S + S V+L NL Q+ + AN++ Sbjct: 472 ASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQV 531 Query: 703 VTTSDQILNTLLNLK 717 + T++ I + L+N++ Sbjct: 532 LQTANAIFDALINIR 546 Score = 39.2 bits (91), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 89.3 bits (221), Expect = 3e-23 Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 10/245 (4%) Query: 1 MGEKKESQKVAVITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALC------E 54 M K K+A ITGA+ GIG A L QG + A+ + + +L E Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 55 SIDIDVSDSSALKEAFLNISAKEDHCDVLINSAGYGVFGSVEDTPIDEVKKQFGVNFFAL 114 + DV DS+A+ E I + D+L+N AG G + +E + F VN + Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 115 CEVVQFCLPLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNV 174 + + ++ I + S V + Y++SK A ++ L LEL +N+ Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 175 QVCLIEPGPVKSNWEKTAFENDERKDSLYALEVNAAKSFYSGV-YQKALSPKAVAQKIVF 233 + ++ PG +++ + + + ++ + + + ++F +G+ +K P +A ++F Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIK---GSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 234 LAMSQ 238 L Q Sbjct: 238 LVSGQ 242
>SECA#SecA protein signature. Length = 901 Score = 27.5 bits (61), Expect = 0.015 Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 12/69 (17%) Query: 4 SPTKKDYTQYSEKQLFNLINQLERKIKKMQNDRASFKEKMAKELEKRDQNFKDKIDALNE 63 S + + +++ N+IN +E +++K+ ++ EL+ + F+ +++ Sbjct: 12 SRNDRTLRRM--RKVVNIINAMEPEMEKLSDE----------ELKGKTAEFRARLEKGEV 59 Query: 64 LLQKISQVF 72 L I + F Sbjct: 60 LENLIPEAF 68
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 1426 bits (3693), Expect = 0.0 Identities = 824/1195 (68%), Positives = 934/1195 (78%), Gaps = 143/1195 (11%) Query: 1 MANETINQPDQTPSQTAFDSQQFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAF 60 M NETI+Q Q ++ AF+ QQFINNLQVAF+KVD+AVAS+DPDQKPIVDKNDRDNRQAF Sbjct: 1 MTNETIDQ--QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAF 58 Query: 61 DGISQLREEYANKAIKNPTKKNQYFSDFISKSNDLINKDNLIDTDSSTKSFQKFGTERYQ 120 +GISQLREEY+NKAIKNPTKKNQYFSDFI+KSNDLINKDNLID +SSTKSFQKFG +RY+ Sbjct: 59 EGISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYR 118 Query: 121 IFMNWVSHQKDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQTRS 180 IF +WVSHQ DPSKINT+ IRNFMENIIQPPI DDKEKAEFL+SAKQSFAGIIIGNQ R+ Sbjct: 119 IFTSWVSHQNDPSKINTRSIRNFMENIIQPPILDDKEKAEFLKSAKQSFAGIIIGNQIRT 178 Query: 181 DEKFMGVFGESLDESLDESLDESLDESLDESLDESLDESLDESLDESLKERQEAENNGDP 240 D+KFMGVF DESLKERQEAE NG+P Sbjct: 179 DQKFMGVF------------------------------------DESLKERQEAEKNGEP 202 Query: 241 -GGDWLDTFLSFAFDKKQSSDLKETLNQEPRPNVGQNIATTTTDIQGLPPEARDLLDERG 299 GGDWLD FLSF FDKKQSSD+KE +NQEP P+V +IATTTTDIQGLPPEARDLLDERG Sbjct: 203 TGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDIATTTTDIQGLPPEARDLLDERG 262 Query: 300 NFPKFTLGD-------------PNYKFNQLVVHNNALSSMLMGSHSNMEPEKVSLLYGDN 346 NF KFTLGD PNYKFNQL++HNNALSS+LMGSH+ +EPEKVSLLYG N Sbjct: 263 NFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALSSVLMGSHNGIEPEKVSLLYGGN 322 Query: 347 GGPEARHDWNATVGYKNQQGNNVATLINAHLKNGSGLIIAGNENGINNPSFYLYKKDQLT 406 GGP ARHDWNATVGYK+QQGNNVAT+IN H+KNGSGL+IAG E GINNPSFYLYK+DQLT Sbjct: 323 GGPGARHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKGINNPSFYLYKEDQLT 382 Query: 407 GLEQALSQEEIQNKLGFMEFLAQNSARHVGLNNLSKEEKEKFQTEIGNFQKDPKPYLDSL 466 G ++ALSQEEIQNK+ FMEFLAQN+A+ L+NLS++EKEKF+TEI +FQKD K YLD+L Sbjct: 383 GSQRALSQEEIQNKIDFMEFLAQNNAK---LDNLSEKEKEKFRTEIKDFQKDSKAYLDAL 439 Query: 467 GNDRIAFVSKKDSKHLALVTEFGNGELSYTLKDYGKKPDRALDRETKTTLQGNLKHDGVM 526 GNDRIAFVSKKD+KH AL+TEFGNG+LSYTLKDYGKK D+ALDRE TLQG+LKHDGVM Sbjct: 440 GNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKALDREKNVTLQGSLKHDGVM 499 Query: 527 FVNYSNFKYTNASKSPNEGIGATNGVSHLEANFSKVAVFNLASSNELTISNFAKRNLEDK 586 FV+YSNFKYTNASK+PN+G+G TNGVSHLE F+KVA+FNL N L I++F +RNLEDK Sbjct: 500 FVDYSNFKYTNASKNPNKGVGVTNGVSHLEVGFNKVAIFNLPDLNNLAITSFVRRNLEDK 559 Query: 587 LIAKGLSGKESNKLIKDFLNSNKELLEKSLNFNKAVAEAKNTGNYGGVKKAQKDLEKSIR 646 L KGLS +E+NKLIKDFL+SNKEL+ K+LNFNKAVA+AKNTGNY VKKAQKDLEKS+R Sbjct: 560 LTTKGLSPQEANKLIKDFLSSNKELVGKTLNFNKAVADAKNTGNYDEVKKAQKDLEKSLR 619 Query: 647 KRERLEQEITKQFESKSGNKNKMEAKAQANSQKDEVFKLINEGAYKEARNIAYAQNLKGI 706 KRE LE+E+ K+ ESKSGNKNKMEAKAQANSQKDE+F LIN+ A ++AR IAYAQNLKGI Sbjct: 620 KREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYAQNLKGI 679 Query: 707 RRELRELFDKIENLNKNLKDFNKSFDALKSGKNKDFSKAEETLKALESSVKDLGI-PEWT 765 +REL DK+EN+NKNLKDF+KSFD K+GKNKDFSKAEETLKAL+ SVKDLGI PEW Sbjct: 680 KRELS---DKLENVNKNLKDFDKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWI 736 Query: 766 SKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQEITDKVDNLNQAVSIAKA 825 SKVENLNAALNEFKNGKNKDFSKVTQAKSDLENS+KDVIINQ++TDKVDNLNQAVS+AKA Sbjct: 737 SKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKA 796 Query: 826 TGDFSGLDQALAELKNF---------------NVGKNSDRSEPIYATIDDLDGSSPLKR- 869 TGDFS ++QALA+LKNF N K S+ + + ++ + L + Sbjct: 797 TGDFSRVEQALADLKNFSKEQLAQQAQKNESLNARKKSEIYQSVKNGVNGTLVGNGLSQA 856 Query: 870 ------------------------------------YAKVDDLSKAGRLDSP-EPIY--- 889 YAKV+ KAG+ S EPIY Sbjct: 857 EATTLSKNFSDIKKELNAKLGNFNNNNNNGLKNEPIYAKVNK-KKAGQAASLEEPIYAQV 915 Query: 890 -----ATIDDL------------GGPFSLKKYAKVDDLTKVGFSREQELTQKIGNLNQAV 932 A ID L F LK++ KVDDL+KVG SR QEL QKI NLNQAV Sbjct: 916 AKKVNAKIDRLNQIASGLGVVGQAAGFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAV 975 Query: 933 SEAKAGFFGNLEQTMDRLKDSTKKNVVNLWFEGARKVPISLPSSQAKLDNYATNSHTRIN 992 SEAKAGFFGNLEQT+D+LKDSTK N +NLW E A+KVP SL AKLDNYATNSH RIN Sbjct: 976 SEAKAGFFGNLEQTIDKLKDSTKHNPMNLWVESAKKVPASL---SAKLDNYATNSHIRIN 1032 Query: 993 SNVKNGTINEKAIGMLTQKNPEWLKLVNDKIVAHNVGSTPLSDYDKIGFNQKNMKGYSDS 1052 SN+KNG INEKA GMLTQKNPEWLKLVNDKIVAHNVGS PLS+YDKIGFNQKNMK YSDS Sbjct: 1033 SNIKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDS 1092 Query: 1053 FKFSTKLSNAVKNIKSGFEQLLTDCISAGSY---SPKKAEYGV----TKSGFQKS 1100 FKFSTKL+NAVK+ SGF Q LT+ S SY + + AE+G+ TK GFQKS Sbjct: 1093 FKFSTKLNNAVKDTNSGFTQFLTNAFSTASYYCLARENAEHGIKNVNTKGGFQKS 1147
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 40.1 bits (94), Expect = 1e-05 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 13/181 (7%) Query: 211 AASIATLSNDERELGVACVDIGGETCNLTIYSGNSIRYNKYLPIGSHHLSTDLSSMLNTP 270 AA+I G VDIGG T + + S N + Y+ + IG + + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 271 F------PYAEEVKIKYGDLSFESGEETASQSVQIPTTGSDGNESHVVPLIKIQNIMRDR 324 + AE +K + G S G+E V+ + +I +++ Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFQIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELAKAHFTNYPVRLAA-PM 380 + +++ E + G+VLTGG AL++ + L T PV +A P+ Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL-MEETGIPVVVAEDPL 322 Query: 381 E 381 Sbjct: 323 T 323
>PF02370#M protein repeat Length = 168 Score = 36.6 bits (84), Expect = 9e-05 Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 7 EMADETSTLRQKNRELKEKID--LQKDDYREKLEQDNRVLEKCKKDLLADNENLKNRIQE 64 ++ E + L ++N +L+++++ L D + + + R L +DL +++I+E Sbjct: 14 KLITEYNKLVEENSKLQKQLEEYLDSSDSKRENDPQYRALMGENQDLRKREGQYQDKIEE 73 Query: 65 LENEKNKLDPRDERIKELEEEKRELEEIRAQKKDAEQKYNTLLAHNNQLE 114 LE E+ + R ER +E E + + + + Q+K +Q+ L A +L Sbjct: 74 LEKERKEKQERPER-REKFERQHQDKHYQEQQKKHQQEQQQLEAEKQKLA 122 Score = 28.9 bits (64), Expect = 0.028 Identities = 25/124 (20%), Positives = 59/124 (47%), Gaps = 17/124 (13%) Query: 2 HRQLNEMADETSTLRQKNRELKEKIDLQKDDYREKLEQDNRVLEKCKKDLLADNENLKNR 61 Q + E LR++ + ++KI+ + + R++ ++ EK ++ ++ + + Sbjct: 47 DPQYRALMGENQDLRKREGQYQDKIE-ELEKERKEKQERPERREKFERQHQD--KHYQEQ 103 Query: 62 IQELENEKNKLDPRDERIKELEEEK-----------RELEEIRAQKKDAEQKYNTLLAHN 110 ++ + E+ +L+ ++L +EK R+LE RA KK+ E K+ L + Sbjct: 104 QKKHQQEQQQLE---AEKQKLAKEKQISDASRQGLNRDLEASRAAKKELEPKHQKLGTEH 160 Query: 111 NQLE 114 +L+ Sbjct: 161 QKLK 164
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.9 bits (64), Expect = 0.015 Identities = 13/33 (39%), Positives = 21/33 (63%) Query: 80 IENIFADEKEDTTYIITSYLNKEELFEKKPELK 112 + N+ A EK D ++++ L+ E FEK PE+K Sbjct: 314 VGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIK 346
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 33.1 bits (75), Expect = 0.009 Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 25/207 (12%) Query: 405 SNNYQIGTVTNAQGQNISAYDCASATGSLSSNTSSGISCKATSS------TNNTNNTNNT 458 N+ +G AQ I++ + G+L S+G++ A N+ + Sbjct: 287 FNHLTVGDHNAAQAGIIAS--NKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQ 344 Query: 459 NNTNNTNNTNNTNNTNNTNSFDNSLVATSKIQTI--------GGKEQI-GVNSFN----L 505 NN N ++ NN+N + ++IQ GGK + +N N Sbjct: 345 NNAKNDKQESSQNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADG 404 Query: 506 VSQVWSVYNSLKTSEANL--QNNAKILCPNGSNQDTCNNNNSGGLSISGNSQLQNIL--S 561 +V SL T+ A+L L S + N +G +++ G ++ N + Sbjct: 405 TIRVGGFKASLTTNAAHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGY 464 Query: 562 STSGTSANIQAKSNAPKLKATVVVNNE 588 + +G+SAN + K+ T NN+ Sbjct: 465 ALAGSSANFEFKAGTDTKNGTATFNND 491
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 98.4 bits (245), Expect = 2e-26 Identities = 35/202 (17%), Positives = 75/202 (37%), Gaps = 18/202 (8%) Query: 94 AERKIGDWIFSSAVFFFALALIEAIIIICLLPLKEKVPYLVTFSNATQNFAIVQR--ADK 151 +K+ + A ALA + + L PLK PY++T T +I + D Sbjct: 30 RSKKLAWVV---AGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLHGDA 86 Query: 152 SIRANQALIRQLVASYVNNRE--NISNIKEQNEIAHETIRLQSAFEVWDFFEKLVSYEH- 208 +I ++A+ + +A+YV RE + +E + + + SA D + + ++ Sbjct: 87 TITYDEAVRKYFLATYVRYREGWIAAAREEY----FDAVMVMSARPEQDRWSRFYKTDNP 142 Query: 209 ----SIYTNINLTRKISIINIALISKTQANIEISAQLFNKEKLESEKRYRIIMTFEFEPI 264 +I N + I ++ + A + + + ++ + ++ + Sbjct: 143 QSPQNILAN-RTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDAVATIKYKVDGT 200 Query: 265 EIDTKSVPLNPTGFIVTGYDVT 286 NP G+ V Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.2 bits (68), Expect = 0.025 Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 20/172 (11%) Query: 240 ETELDTLEKQARNNKSFRHENYFYKVL-GSATSQIESLKKRENALSDHLDSLKSLLEKTH 298 + ++E E YF V +K++ + + + L+K Sbjct: 154 QILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKR 213 Query: 299 WEKEKFTPLINEKE-----LNQQLKEIKWLNKESLTPKNTYKKTQKLVVCKSPLIKDYLY 353 E+ IN E +L + L + K+ + + Y+ Sbjct: 214 AERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENK----------YVE 263 Query: 354 TTKKLFATQKKIIALEKDYKDLK----VLKEEFSKDLEADLSHSKKRFELYT 401 +L + ++ +E + K ++ + F ++ L + L T Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLT 315
>SECA#SecA protein signature. Length = 901 Score = 31.0 bits (70), Expect = 0.011 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 21/162 (12%) Query: 61 EFETLQSIYSKELEELQQTITTDKMQQQLLEQDNIDFELQSALQND-LKDLEHLSDDLQN 119 + + + E++ + + Q LE+ LQ L+ND DL + Sbjct: 668 DVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKE 727 Query: 120 DKLNLE-IKEFINKQDDKNYQNKEQLNTETKENIRENSKS-----------SHLIPITNL 167 +L+ E ++E I Q + YQ KE++ E +R K HL + L Sbjct: 728 PELHEETLRERILAQSIEVYQRKEEVVGA--EMMRHFEKGVMLQTLDSLWKEHLAAMDYL 785 Query: 168 KNFLHNRRENFKVTQQDLPSEKQKKYSDKLFKKELLEYAKHN 209 + +H R Q+D P ++ K+ S +F +LE K+ Sbjct: 786 RQGIHLR----GYAQKD-PKQEYKRESFSMF-AAMLESLKYE 821
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 1e-04 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 20/94 (21%) Query: 192 SGSNGANGNNSNHNAVGSGIDTDGVLGVDGVNGSSSSSGGSVGGYENNFTNHGSTNNNTG 251 SG +G N H+ G+ +NG + G G ++ + S NN G Sbjct: 2 SGGDGRGHNTGAHSTSGN------------INGGPTGLGVGGGA--SDGSGWSSENNPWG 47 Query: 252 GYDNFNNGSSSGGGLGNGGLFPIPFGNGDTNNSN 285 G G G GNGG GNG++ + Sbjct: 48 GGSGSGIHWGGGSGHGNGG------GNGNSGGGS 75 Score = 33.5 bits (76), Expect = 0.003 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 21/111 (18%) Query: 168 INGKDGANGSNGYGINGNDGINGSSGSNGANGNNSNHNAVGSGIDTDGVLGVDGVNGSSS 227 ++G DG G N + + ING G G S+ GSG ++ + G S Sbjct: 1 MSGGDG-RGHNTGAHSTSGNINGGPTGLGVGGGASD----GSGWSSE-----NNPWGGGS 50 Query: 228 SSGGSVGGYENNFTNHGSTNNNTGGYDNFNNGSSSGGGLGNGGL-FPIPFG 277 SG GG G N G N+G SG G + P+ FG Sbjct: 51 GSGIHWGG------GSGHGNGGGNG----NSGGGSGTGGNLSAVAAPVAFG 91
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 221 bits (566), Expect = 2e-77 Identities = 65/148 (43%), Positives = 94/148 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAYSCAKNPMFSLKERLEMIQLATKGFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERLE I A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 5e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 33.9 bits (77), Expect = 0.003 Identities = 72/270 (26%), Positives = 117/270 (43%), Gaps = 33/270 (12%) Query: 545 HLEPGFNPKTL--IESVCSKVLKEFEKVEILDKYGVYQLFKDYYNEVLQDDWFLLSFNDF 602 HLE GFN + + + + + F + + DK L N++++D LS N Sbjct: 527 HLEVGFNKVAIFNLPDLNNLAITSFVRRNLEDKLTTKGLSPQEANKLIKD---FLSSNKE 583 Query: 603 LSAKELRELNPLKDKNKKANYLEEPDFVIQKTYYKSDLIPKNLIKQRFFEKE-AKELEQL 661 L K L + D NY E ++K + DL K+L K+ EKE K+LE Sbjct: 584 LVGKTLNFNKAVADAKNTGNYDE-----VKKA--QKDL-EKSLRKREHLEKEVEKKLESK 635 Query: 662 ENALNEKEADFEEFIEEHSSEEGLFYELKINESVLKKELKNATDLEDKKILKTALELLEA 721 N+ EA + +S++ + L IN+ + A K I + + LE Sbjct: 636 SGNKNKMEAK-----AQANSQKDEIFAL-INKEANRDARAIAYAQNLKGIKRELSDKLEN 689 Query: 722 KNKALKMKNKAHEELE-------LKAFHQYKNLKLGEIKDLIIQDKWLKSLKNALENKIL 774 NK LK +K+ +E + KA K LK G +KDL I +W+ ++N + Sbjct: 690 VNKNLKDFDKSFDEFKNGKNKDFSKAEETLKALK-GSVKDLGINPEWISKVEN-----LN 743 Query: 775 KRINAFTSALNKIISNYSNSLLELDKEVKE 804 +N F + NK S + + +L+ VK+ Sbjct: 744 AALNEFKNGKNKDFSKVTQAKSDLENSVKD 773
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.7 bits (87), Expect = 2e-04 Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 5/181 (2%) Query: 403 EQNKANENAQQETKNSQAQETTSSQAYESVSQANTQDTTQANESI-KPQTNSTATQQENT 461 A+ + S+ E A E+ +Q + QTN A T Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 462 KESQATQQNSAIQAQKEPHAKEEPKKVSHHDEPWLDYDPKN---HAGLKERQENQEKTPS 518 KE+Q T+ +KE AK E +K + PK + + +E P+ Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 519 KGNDEPYIEHGKRM-QEKAKAHYQACLEKERAKQNQQNTQNTIENQNKEVPTIDYGYTQN 577 EP + E+ + +E+ + NT N++ + T N Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212 Query: 578 T 578 + Sbjct: 1213 S 1213
>cloacin#Cloacin signature. Length = 551 Score = 35.8 bits (82), Expect = 7e-04 Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 5/107 (4%) Query: 111 GENDSEMSSAIGINKNTYTSSKNGKGFSGSGASGMGYASGYGDTGNNTSSNGSNGSSMSG 170 G N S++ IN G G G + G G++S G + S G Sbjct: 8 GHNTGAHSTSGNIN-----GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 171 TSGTNGSRGANGSNGTNGANGYQGVGSDPFPPIAGSGSGSSGSSNSG 217 +G GS + + FP ++ G+G S S Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 35.5 bits (81), Expect = 8e-04 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%) Query: 130 SSKNGKGFSGSGASGMGYASGYGDTGNNTSSNGSNGSSMSGTSGTNGSRGANGSNGTNGA 189 S +G+G + S G +G G TG S+GS S + G G +GS G Sbjct: 2 SGGDGRGHNTGAHSTSGNING-GPTGLGVGGGASDGSGWSSENNPWG--GGSGSGIHWGG 58 Query: 190 NGYQGVGSDPFPPIAGSGSGSSGSSNSGYTP 220 G G +G GSG+ G+ ++ P Sbjct: 59 GSGHGNGGGNGN--SGGGSGTGGNLSAVAAP 87 Score = 34.7 bits (79), Expect = 0.001 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 149 SGYGDTGNNTSSNGSNGSSMSGTSGTNGSRGANGSNGTNGANGYQGVGSDPFPPIAGSGS 208 SG G+NT ++ ++G+ G +G GA+ +G + N G GS G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 209 GSSGSSNSGYTPFTSSGGGMGGGFIPFPYS-PGLQN-GSGANGINGTNGA 256 +G N + +GG + P + P L G+G ++ + GA Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 32.0 bits (72), Expect = 0.009 Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 17/102 (16%) Query: 168 MSGTSGTNGSRGANGSNGT-NGANGYQGVGSDPFPPIAGSGSGSSGSSNSGYTPFTSSGG 226 MSG G + GA+ ++G NG GVG A GSG S +N GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGG-----ASDGSGWSSENNP-------WGG 48 Query: 227 GMGGGFIPFPYSPGLQNGSGANGINGTNGANGTNGANGSNSA 268 G G G + G G + G +GT G + +A Sbjct: 49 GSGSG----IHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAA 86
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 89.9 bits (223), Expect = 5e-23 Identities = 35/217 (16%), Positives = 73/217 (33%), Gaps = 15/217 (6%) Query: 113 ESFKKDELDLSSVFEIQRKNTQMAYRLAIGGLIGVISLSVALAFLMPLKQIEPYFVDFAN 172 F++ ++ ++A+ +A + VA+A L PLK +EPY + Sbjct: 12 AYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDR 71 Query: 173 SDKHFAVVQKADTKVDYS--EAFLRNLVGSYIMGRETINHIDDKIRLNETIREQSSDEVW 230 + ++ K + EA + + +Y+ RE + + + S+ Sbjct: 72 NTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYF-DAVMVMSARPEQ 130 Query: 231 KTLEQLVSGKG-----SIYSNSNMDREIKIINISIYKQGKQQNIAVADIVAKVFDKGYLI 285 + +I +N D ++I +S Q V V Sbjct: 131 DRWSRFYKTDNPQSPQNILANRT-DVFVEIKRVSFLGGNVAQ---VYFTKESVTGSN--S 184 Query: 286 SEKRYRVSLIYRFKPLIQFDYSSMPKNPTGFIVDKYS 322 ++ ++ Y+ + KNP G+ V+ Y Sbjct: 185 TKTDAVATIKYKVDGTPSKEVDRF-KNPLGYQVESYR 220
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 110 bits (276), Expect = 3e-28 Identities = 76/401 (18%), Positives = 151/401 (37%), Gaps = 29/401 (7%) Query: 54 KKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRILEITGAKDLAYKSENFILRLEM 113 K P + + N N I + L + ++ ++ +N + L + Sbjct: 170 KLNPFDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTL----SSEICFRLKNNSIDLSL 225 Query: 114 IPKKANLMILDKEKCVIEA--FRFNDRVAKNDILGALPPN-TYEHQERDLDFKGLLDILE 170 K + + I++ F FN N +G N + + + + +LE Sbjct: 226 SNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLE 285 Query: 171 KDFLSYQHKE-LEHKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTY 229 + + + L+ K + + K + R +K + L + + + LL Sbjct: 286 NFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTAN 345 Query: 230 QHLINKHESRVVLKDFED---KECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEE 286 + + K S + L ++ I +D++ + + + K K+ + + Sbjct: 346 IYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLL 405 Query: 287 NLKEKIAFKENQINYVKGAQEESVLE------------MFMPVKNSKTKRPMSGYEVLYY 334 +E++ + + + + A +E F + SK + + Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISK 465 Query: 335 KDFKIGLGKNQKENIKL-LQDARANDLWMHVRDIPGSHLIVFCQKNTPKDEIIMELAKML 393 I +GKN +N L L+ A +D+W H ++IPGSH+IV + P + ++E A + Sbjct: 466 DGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIP-ESTLLEAANLA 524 Query: 394 IKMQKDVFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 K +S +DYT+ K VK GA VIYS +TI Sbjct: 525 AYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 34.8 bits (80), Expect = 6e-04 Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 5/92 (5%) Query: 46 NAPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRI--LEITGAKDLAYK 103 N P I L+ + +K + L K+ NAKI+ + I+ DRI ++ +L + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 104 SENFILRLEMIPKKANLMILDK-EKCVIEAFR 134 S + L +E++ + +N+ ++ K + ++++ + Sbjct: 114 SI-YSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 132 bits (333), Expect = 3e-40 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 6/203 (2%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIA-LSYLFDT 215 Q+ L + V I +A V + + + K +A + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST--KTDAVATIKYKVDG 199 Query: 216 PDFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 200 TPSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.4 bits (73), Expect = 0.002 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 191 KEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQ-RKWYCLWICSKKSKLSLMPEEI 249 KE+ +EE+ I D A+ + Q + ALK + + Y + +K +MP EI Sbjct: 365 KEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEI 419 Query: 250 FNDKQFTYFKF 260 F+D FTYF F Sbjct: 420 FDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.5 bits (217), Expect = 2e-21 Identities = 74/369 (20%), Positives = 130/369 (35%), Gaps = 62/369 (16%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171 Query: 180 -------FAVNGILFNHESRVRGET---FVTRKITRAASAIAYNLTDCLYLGNLDAKRDW 229 F V G R + T+ + S YN KRD+ Sbjct: 172 PATGLRFFTVYG------PWGRPDMALFKFTKAMLEGKSIDVYN--------YGKMKRDF 217 Query: 230 GHAKDYVKMMYLMLQAPVPQDYVIATGKTTSVRDFVKMSFEFIGIGLEFQNTGIKEIGLI 289 + D + + + D T + IG ++ ++ + I Sbjct: 218 TYIDDIAEAIIRLQDVIPHADTQWTVETGTPAA--SIAPYRVYNIG---NSSPVELMDYI 272 Query: 290 KSVDEKRANALKLNLSHLKKGQIVVRIDERYFRPTEVDLLLGDPTKAEKELGWVREYDLK 349 +++++ K N+ L+ G +V D + +G+ E +K Sbjct: 273 QALEDALGIEAKKNMLPLQPG--------------DVLETSADTKALYEVIGFTPETTVK 318 Query: 350 ELVKDMLEY 358 + VK+ + + Sbjct: 319 DGVKNFVNW 327
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 48.2 bits (115), Expect = 2e-08 Identities = 51/346 (14%), Positives = 106/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGVYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TG G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSAYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + AY NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYKMVAQVLDYKGAFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>FLAGELLIN#Flagellin signature. Length = 507 Score = 285 bits (731), Expect = 9e-93 Identities = 128/519 (24%), Positives = 220/519 (42%), Gaps = 18/519 (3%) Query: 2 SFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANL 61 + INTN +L + ++ LSS++E+LSSGLRIN A DD++G AIA+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLE 121 QA RNAND I + QT + A++E L ++ +VQA + +++Q +IQ+ LE Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSG 181 E+D ++N T FNG ++LS + Q+GA T+ + +G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVN---- 175 Query: 182 EGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVR 241 + ++ +FK V G + Y + + +G + + V Sbjct: 176 -----GPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN 230 Query: 242 ASYNVMATG----GTPVQSGTVKELTINGVEIGTVNDVHKNDADGRLINAINSVKDRTGV 297 A+ + T T V + T E + K +G + V Sbjct: 231 AANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFD-YKGVTFTIDT 289 Query: 298 EASLDIQGRINLHSIDGRAISVHATSASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARD 357 + D G+++ +I+G +++ + S D + Sbjct: 290 KTGNDGNGKVST-TINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 358 IIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAG 417 S ++ +G ++ TVN + + AG + + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 418 --VTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRD 475 + K + DSA +++D +RS +G++Q + I N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 476 VDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 D+A E +N SK IL Q+G+ +AQAN V QNVL LL+ Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 0.002 Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 45/191 (23%) Query: 122 IELEQEKQKTSNIETSNQIKVEQEKQKTSNIETS------------------NQIKTEQE 163 +E + T+NI T N I+ + ++N E + + E Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 164 KQKTSNIETSNQIKTEQEKQ------------KTNKSGIELEQEKQKTIKAQKDFIKDLE 211 KQ++ +E + Q TE Q K N E+ Q +T + Q K+ Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 212 QNCEEKHGQFFIKKARIKDSISIEVEAECKTPKPTKTNQTPIQPKHLP--------NSKQ 263 +E+ KA+++ + EV P + +QP+ P N K+ Sbjct: 1105 TVEKEE-------KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 264 PHSQRGSKAQE 274 P SQ + A Sbjct: 1158 PQSQTNTTADT 1168 Score = 32.7 bits (74), Expect = 0.003 Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 9/174 (5%) Query: 96 DDQSKKEVAEAQKEAESARDRANKSGIELE-QEKQKTSNIETSNQIKVE-QEKQKTSNIE 153 + EVA++ E + + K +E +EK K +T KV Q K E Sbjct: 1078 ANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSE 1137 Query: 154 TSN-QIKTEQEKQKTSNI-----ETSNQIKTEQEKQKTNKSGIELEQEKQKTIKAQKDFI 207 T Q + +E T NI +T+ TEQ ++T+ + + E Sbjct: 1138 TVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197 Query: 208 KDLEQNCEEKHGQFFIKKA-RIKDSISIEVEAECKTPKPTKTNQTPIQPKHLPN 260 + + + K+ V + +P T+ L + Sbjct: 1198 NPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCD 1251 Score = 29.3 bits (65), Expect = 0.032 Identities = 40/220 (18%), Positives = 89/220 (40%), Gaps = 26/220 (11%) Query: 98 QSKKEVAEAQKEAESARDRANKSGIELEQEKQKTSNIETSNQIKVEQEKQKTSNIETSNQ 157 Q+++ EA+ ++ + E ++ +T+ + + ++ ++EK K +ET Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE-KEEKAK---VETE-- 1117 Query: 158 IKTEQEKQKTSNIETSNQIKTEQEKQKTNKSGIELEQEKQKTIKAQKDFIKDLEQNCEEK 217 KT++ + TS Q+ +QE+ +T + E +E T+ ++ + N Sbjct: 1118 -KTQEVPKVTS------QVSPKQEQSETVQPQAEPARENDPTVNIKE---PQSQTNTTAD 1167 Query: 218 HGQFFIKKARIKDSISIEVEAECKTPKPTKTNQTPIQPKH-LPNSKQPHSQRGSKAQELI 276 Q A+ S + E T N P++ P + QP S + Sbjct: 1168 TEQ----PAKETSSNVEQPVTESTTVN--TGNSVVENPENTTPATTQPTVNSESSNKPKN 1221 Query: 277 AYLQKELESLPYSQKAIAKQVNFYRPSSIAYLELDPRDFN 316 + ++ + S+P++ + N S++A +L + N Sbjct: 1222 RH-RRSVRSVPHNVEPATTSSN--DRSTVALCDLTSTNTN 1258
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.005 Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 4/172 (2%) Query: 117 KQIELEQEKQKANKSGIELEQEKQKTEQERQKTNKSGIELEQERQKAEQEKQKTNKSGIE 176 I Q S +E + ++ E AE KQ++ Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN 1054 Query: 177 LEQERQKTEQEKQKTIKAQKDFIKDLEQNCEEKHGQFFIKKARIKDSISIEVEAECKTPK 236 + + T Q ++ +A+ + + + N + G + + + VE E K Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK--A 1112 Query: 237 PTKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQ 288 +T +T PK S+ Q S+ + A +E + ++ ++ Sbjct: 1113 KVETEKTQEVPKV--TSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQT 1162 Score = 29.6 bits (66), Expect = 0.021 Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 4/143 (2%) Query: 54 PKKSNAALVVLTHVACKKAKELDDKVQDKSKQAEKENKINWWKYSGLTIATSFLLAACSV 113 P + A T + +K+ V+ + A + N V Sbjct: 1026 PPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEV 1085 Query: 114 DTDKQIELEQEKQKANKSGIELEQEKQKTEQERQKTNKSGIELEQERQKAEQEKQKTNKS 173 E + + ++ ++EK K E E+ + + +QE+ +T + Sbjct: 1086 AQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPK----VTSQVSPKQEQSETVQP 1141 Query: 174 GIELEQERQKTEQEKQKTIKAQK 196 E +E T K+ + Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNT 1164
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 294 bits (755), Expect = 3e-92 Identities = 105/441 (23%), Positives = 185/441 (41%), Gaps = 67/441 (15%) Query: 388 DLEHMNSFKEGEILVTDN-TDPDWEPCMKK-ASAVITNRGGRTCHAAIVAREIGVPAIVG 445 + + + E +++ ++ T D K+ T+ GGRT H+AI++R + +PA+VG Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 446 VSGATDSLYTGMEITVSCAEGE---------EGYVYAGIYEHEIERVELSNMQETQT--- 493 T+ + G + V EG E ++ E + + + Sbjct: 206 TKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTK 265 Query: 494 -----KIYINIGNPEKAFGFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEK 548 ++ NIG P+ G G+GL R E + +++ + P Sbjct: 266 DGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQ-LPTE------------- 311 Query: 549 NEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEP 608 E Y K++ + KPV++RT D ++ + L P Sbjct: 312 ---EEQFEAY--------KEVVQ-------RMDGKPVVIRTLDIGGDKELSYL----QLP 349 Query: 609 NEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVL 668 E NP LG+R + F + AL N+KVM P + T+EE ++ Sbjct: 350 KELNPFLGFRAIRLCLE--KQDIFRTQLRALL---RASTYGNLKVMFPMIATLEELRQAK 404 Query: 669 EILRKNNLESGKNG------LEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGV 722 I+++ + G +E+ IM E+P + A+ F D FSIG+NDL Q T+ Sbjct: 405 AIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAA 464 Query: 723 DRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITS 782 DR +E VS+++ + A+L++ I+A K+ G+CG+ D L+ G+ Sbjct: 465 DRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLGLGLDE 523 Query: 783 ISLNPDSVIPTWNAVAKLEKE 803 S++ S++P + + KL KE Sbjct: 524 FSMSATSILPARSQLLKLSKE 544
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 148 bits (376), Expect = 5e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKTLSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.015 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 360 bits (925), Expect = e-126 Identities = 119/345 (34%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDVQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++DV +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIMVHPIVVTSQDITLKITKEPLDN--------SKNAQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.027 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.006 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.015 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 102 RGETILKALERIAFE---EFQLNSLHLEVMENNFKAIAFYEKNHYELEG 147 R + + AL A E E L LE + N A FY K+H+ + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 552 bits (1423), Expect = 0.0 Identities = 178/582 (30%), Positives = 294/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKILKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL++ + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQRKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ ++ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIVLKDGANTLEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 349 bits (898), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 31.3 bits (71), Expect = 0.006 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 36.3 bits (83), Expect = 6e-05 Identities = 46/212 (21%), Positives = 94/212 (44%), Gaps = 17/212 (8%) Query: 45 PNPEEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKI 103 P E + E +I+ + L L +LQMQ A E+ +A I + G+K Sbjct: 17 PPQAEFVPIVEPEETIIE---EAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQ 70 Query: 104 GFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALE----KELSAIAIDI 159 G++EG + L + E K+Q + + + + + L AL+ L +A++ Sbjct: 71 GYQEG---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEA 127 Query: 160 AKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---K 216 A++VI + ++ + + + L + L + L+V+P D +++ L + + Sbjct: 128 ARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWR 187 Query: 217 LESSEAISKGGVMITSSNGSLDGNLMERFKTL 248 L + GG +++ G LD ++ R++ L Sbjct: 188 LRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 141 bits (356), Expect = 2e-37 Identities = 99/437 (22%), Positives = 174/437 (39%), Gaps = 85/437 (19%) Query: 3 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANVYIAL 119 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNHLEILPVINKIDLPNANVLEVKQDIEDTIGIDCFNANEVSAKARLGIKD--------- 170 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 171 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 198 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 199 F--------------------DNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 238 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 239 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 295 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 296 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 355 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 356 EREFGLNLIATAPTVVY 372 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.2 bits (65), Expect = 0.021 Identities = 8/40 (20%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAVTG 42 + A + L+ SNN+++ N G+ R + Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.6 bits (95), Expect = 8e-06 Identities = 58/315 (18%), Positives = 104/315 (33%), Gaps = 67/315 (21%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSQTTSKTTIKEETQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 263 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 LKIFLTNSSSFSPK-------ESSFIMLLALSYFIFLQPLCG---MLADKIKRTQMLMVF 313 IF+ + + ++ M+ L I + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 314 AIAGLIVTPVVFYGI 328 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 6e-04 Identities = 49/230 (21%), Positives = 76/230 (33%), Gaps = 41/230 (17%) Query: 179 TPSDIQKKETK---NDKEKENLKENPI-DENHKTPNEESFLAIPTPYNTTLNALEPQEGL 234 TP++IQ N++E + E P+ TP+E + T + + Sbjct: 999 TPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT--------ETVAENSKQESKT 1050 Query: 235 VQISSNHPTHYTI----YPKKNRFDDLSNPTNPTLKEIKQETKEKEPTPKKETLT----- 285 V+ + T T K+ + + +N + + ETKE + T KET T Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 286 ------------PATPATLKP-------VMPTLAPNTENDNKTENHKAPNHPTKEENMQE 326 P + + P V P P END T N K P T E Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND-PTVNIKEPQSQTNTTADTE 1169 Query: 327 NTQEENIKEMIKENIKEEEKEVQNAPSFSPITPTSAKKPVMVKELSENKE 376 +E + + + N+ +P T A V S NK Sbjct: 1170 QPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 28.5 bits (63), Expect = 0.003 Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 2 KIKAIMLGLVVSGGLLLANGEQDAYNFKAMEKEIKEITKMIITTGEAVKMNEKQFDQLNA 61 K+ +L L+ GG +LAN NF EKE K+ I A+K + + + Sbjct: 5 KLGVRLLSLLALGGFVLANPVFADQNFARNEKEAKDSAITFIQKSAAIKAGARSAEDIKL 64 Query: 62 D 62 D Sbjct: 65 D 65
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 32.0 bits (73), Expect = 0.008 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 14/124 (11%) Query: 86 LAVVFTLF-----VVYLSMGAMLSPSLLPESLLTIDNHSNFLNACLQL-IGALIVMHLGR 139 L V + V + + ++ + + + + G +VM LG Sbjct: 120 LTVALAILQGTGLVATARSAPLFGRCSVGGQIVPDQSIFTTITMVICMTAGTCVVMWLGE 179 Query: 140 DFYIQGFKALWHRQPNMSSLIAIGTSAALISSLWPLYLVYTNQWSYGHYYFESVCVILMF 199 +G MS L+ I +A S+LW + + G F +V + + Sbjct: 180 LITDRGIGN------GMSILMFISIAATFPSALWAIK--KQGTLAGGWIEFGTVIAVGLI 231 Query: 200 VMVG 203 ++ Sbjct: 232 MVAL 235
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.4 bits (79), Expect = 0.001 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 28/131 (21%) Query: 157 KKLINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGK 216 ++ E + + G A +E+ ++ R +++ G GTGK Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLA------RLMQTDLT----LMITGESGTGK 173 Query: 217 TLLAKAV---AGEAHVPFFSMGGSSF------IEMF-----VGLGASRVRD-LFETAKKQ 261 L+A+A+ + PF ++ ++ E+F GA FE A+ Sbjct: 174 ELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGG 233 Query: 262 APSIIFIDEID 272 +F+DEI Sbjct: 234 T---LFLDEIG 241
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.0 bits (213), Expect = 5e-23 Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Query: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLNANADTKVLITDWNMPEMNG 61 +LV DD + +R ++ LSR GY DV + W + A D +++TD MP+ N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWI-AAGDGDLVVTDVVMPDENA 62 Query: 62 LDLVIKVRADERFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQ 110 DL+ +++ + ++P+++++ + I A + G +Y+ KPF Sbjct: 63 FDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>PF07520#Virulence protein SrfB Length = 1041 Score = 29.2 bits (65), Expect = 0.010 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 121 LEAEDNKIAAIGSGG---NFALSAARALDNFAHLEPRKLVEESLKIAGD 166 E+ ++A I GG + ++ R DN L P + E ++AGD Sbjct: 590 GESPSLRLACIDVGGGTTDLMVTTYRGEDNRV-LHPEQTFREGFRVAGD 637
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.044 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 48 TPKNILMIGSTGVGKTEIARRI---AKIMKLPFVKV 80 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF03944#delta endotoxin Length = 633 Score = 32.3 bits (73), Expect = 0.002 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQYASQFLALVPLSAKKSQNLN 161 + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.5 bits (69), Expect = 0.003 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLIDILGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 49.2 bits (117), Expect = 4e-09 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 14/206 (6%) Query: 104 PTPPKPIEKPKPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIVEQKVEQKK 163 P P +PI P P+ + VE E + + E +E +V +K + K Sbjct: 44 PAPAQPISVTMVAPADLEPPQAV--QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 101 Query: 164 VEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDIDELYGEEFGDLGTAEKDF 223 + KPVKK P ++V P +N Sbjct: 102 KPKPKPVKKVEQP------KRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVA- 154 Query: 224 IRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDISDLKIIIGSEYKMLDDN 283 +++ +YP A L +G V+F + P+G + +++I+ M + Sbjct: 155 -----SGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFERE 209 Query: 284 TLKTIQIAYKDYPRPKTKTLIRIRVR 309 ++ + +P + ++ I + Sbjct: 210 VKNAMRRWRYEPGKPGSGIVVNILFK 235
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.005 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 11/112 (9%) Query: 25 NQTTELHHKNPYELLVATILSAQCTDARVNKITPKLFEKYPSVKDLAL-----ASLEEVK 79 N+ E+ K E A ++ + T +I + K P+ K+L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 80 ETIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 131 ET+ + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLAGELLIN#Flagellin signature. Length = 507 Score = 244 bits (624), Expect = 6e-77 Identities = 127/518 (24%), Positives = 210/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQANSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKISSSAGTGIGVLAEVINKDSNQTGVRAHASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQNGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SLDGRGIEIKTDSTSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K +T NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFSAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNTVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 AGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.010 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSKNILKDFQSFENFKQEVT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.025 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 16/113 (14%) Query: 203 LARMIALQKKLEQIKTDIKRVTKLYDEGLTTIDDL-----QSLKAQGNLSEY--DILDIQ 255 LAR+ + K+ + + L + + + ++A L Y + I+ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 256 FALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQD-LVSLREQISALKYQ 307 + + + +T K +D +LR+ D + L +++ + + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.8 bits (124), Expect = 6e-10 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Query: 27 NVKAVQDSKLTLDSTGIVDSIKVTEGSVVKKGDVLLLLYNQEKQAQSDSTEQQLIFAKKQ 86 K ++ IV I V EG V+KGDVLL L +A + T+ L+ A+ + Sbjct: 95 RSKEIKPI-----ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149 Query: 87 YQRYSKTGGAVDKNTLESYEFN 108 RY +++ N L + Sbjct: 150 QTRYQILSRSIELNKLPELKLP 171 Score = 29.8 bits (67), Expect = 0.009 Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKTGGAVDKNTLESYEFNYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 894 bits (2311), Expect = 0.0 Identities = 286/1040 (27%), Positives = 517/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDMPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKRIQAISP-NYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRRASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + + A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESYYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F ++YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKIGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + ++ F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTAQNPFKAKIFVQLKPLKERKKERKLGQFELMSALRKELKS 631 + + E FT + G AQN FV LKP +ER + ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENS-AEAVIHRAKMELGK 656 Query: 632 MPEAKGLESINLSEVSLIGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKQDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRISVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + + + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQSLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 279 bits (714), Expect = 6e-78 Identities = 107/407 (26%), Positives = 187/407 (45%), Gaps = 15/407 (3%) Query: 2785 SAGLNAIES-AGNNSLMWLNALFMAKGGNPLFAPYYLQDTPTEHIVTLMKDITGALGMLT 2843 S ++ + + +G L L + + +A + T I + T L + Sbjct: 894 SNDIDTLYANSGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIA 952 Query: 2844 NSNLKNNSTDVLQLNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDV 2903 + K + L L+ RL LS + F++RL +LK+QRFA + +A +V Sbjct: 953 SLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEV 1011 Query: 2904 ILKYSQRDKLKNNLWATGVGGVSFVENGTGTLYGINVGYDRFIKG---VIVGGYAAYGYS 2960 + +++ + + N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS Sbjct: 1012 LYQFAPKYEKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYS 1071 Query: 2961 GFYER--ITSSKSDNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDALLSMINQSY 3018 F + +S ++N + G+Y+R F + E F G++++ ++ ALL +NQSY Sbjct: 1072 SFSNQANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSY 1131 Query: 3019 QYSTWTTNARVNYGYDFMFKNKSIILKPQIGLRYYYIGMTGLEGVMNNALYNQFKANADP 3078 Y ++ R +YGYDF F +++LKP +G+ Y ++G T + + Sbjct: 1132 NYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGA 1187 Query: 3079 SKKSVLTIDFAFENRHYFNKNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNTLSYRKGELY 3138 S + + E R+Y+ SYFY G+ ++ + V + R Sbjct: 1188 SSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--L 1244 Query: 3139 NTFASITTGGEVRLFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3185 NT A + GGE++L K + N G L + + N+GMR +F Sbjct: 1245 NTHARVMMGGELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 33.5 bits (76), Expect = 0.019 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 5/100 (5%) Query: 699 SYTFDGVNNAFNENKFNGGSFNFNHVEQTDAFNNNSFNGGSFNFNAKQVDFNHNSFNGGV 758 SY+ + E FN + ++ Q +N + G+ + + N + G Sbjct: 272 SYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGG 330 Query: 759 FDF---NNTPKVSFTDDTFNVNNQFKING-TQTTFTFNKG 794 + + + + + + N TQ N Sbjct: 331 YKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSA 370
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 31.2 bits (70), Expect = 6e-04 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSERKSSFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.2 bits (133), Expect = 1e-10 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGKELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKSDSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK LPV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.8 bits (66), Expect = 0.019 Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 309 EEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEIL 345 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVL 224
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 1966 bits (5095), Expect = 0.0 Identities = 1107/1301 (85%), Positives = 1185/1301 (91%), Gaps = 10/1301 (0%) Query: 1 MEIQQTHRKINRPLVSLVLAGALISAIPQESHAAFFTTVIIPAIVGGIATGTAVGTVSGL 60 MEIQQTHRKINRPLVSL L GAL+S PQ+SHAAFFTTVIIPAIVGGIATG AVGTVSGL Sbjct: 1 MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 Query: 61 LSWGLKQAEEANKTPDKPDKVWRIQAGRGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 L WGLKQAEEANKTPDKPDKVWRIQAG+GFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR Sbjct: 61 LGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 Query: 121 HYWVKGGQWNKLEVDMKDAVGTYKLSGLRNYTGGDLDVNMQKATLRLGQFNGNSFTSFKD 180 HYWVK GQWNKLEVDM++AVGTY LSGL N+TGGDLDVNMQKATLRLGQFNGNSFTS+KD Sbjct: 121 HYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSYKD 180 Query: 181 GADRTTRVDFNAKNISIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSSKNAEISLYD 240 ADRTTRVDFNAKNI IDNFLEINNRVGSGAGRKASSTVLTLQASEGITS +NAEISLYD Sbjct: 181 SADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYD 240 Query: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDRNAAQA 300 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGD NAAQA Sbjct: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQA 300 Query: 301 GIIASKKTYIGTLDLWQSAGLNIIAPPEGGYKNQTDNTTSQSSAKNDKNESAKNDKQKSS 360 GIIAS KT+IGTLDLWQSAGLNIIAPPEGGYK++ ++ S ++ N AKNDKQ+SS Sbjct: 301 GIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNN-----AKNDKQESS 355 Query: 361 QDNSNTQVINPPNSGQKTEIQPTQVIDGPFAGGKDTAVTIDSLNTKSDGTIKVGGYKASL 420 Q+NSNTQVINPPNS QKTEIQPTQVIDGPFAGGK+T V I+ +NT +DGTI+VGG+KASL Sbjct: 356 QNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASL 415 Query: 421 TTNAANLNIGKGGVNLSNQASGRSLLVENLTGNITVNGALKVNGQAGGYALSGSSANFEF 480 TTNAA+L+IGKGG+NLSNQASGRSLLVENLTGNITV+G L+VN Q GGYAL+GSSANFEF Sbjct: 416 TTNAAHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEF 475 Query: 481 KAGVDTKQGTIAFNNNISLGRFVNLKASAHTVNFKDIDTGNGGFNTLDFSGVTNKVNINK 540 KAG DTK GT FNN+ISLGRFVNLK AHT NFK IDTGNGGFNTLDFSGVTNKVNINK Sbjct: 476 KAGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINK 535 Query: 541 LITASTNVAVKNFNINELLVKTNGISVGEYTHFSEDIGNQSRINTVRLETGTRSIYSGGV 600 LITASTNVAVKNFNINEL+VKTNG+SVGEYTHFSEDIG+QSRINTVRLETGTRSIYSGGV Sbjct: 536 LITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGGV 595 Query: 601 KFKGGKKLVIDEIYHAPWNYFDARNITDVEINKKILFGAPGYIAGKTGLMFNNLTLNSNA 660 KFKGG+KLVI++ Y+APWNYFDARNI +VEI K+ FG G G LMFNNLTL NA Sbjct: 596 KFKGGEKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLGQNA 655 Query: 661 SMDYGKDLDLTIQGHFTNNQAVMNLFVQDRRVATLNAGHQASMIFNNMIDNTTGFYKPLI 720 MDY + +LTIQG F NNQ +N V+ +VATLN G+ A+M F+N +D+ TGFY+PL+ Sbjct: 656 VMDYSQFSNLTIQGDFVNNQGTINYLVRGGQVATLNVGNAAAMFFSNNVDSATGFYQPLM 715 Query: 721 KINDAQNLTKNKEHVLVKARNIDYNLVGVQGASYDNISASNTNLMEQFKERLALYNNNNR 780 KIN AQ+L KNKEHVL+KA+ I Y G A D+I+ N NL+EQFKERLALYNNNNR Sbjct: 716 KINSAQDLIKNKEHVLLKAKIIGY---GNVSAGTDSIA--NVNLIEQFKERLALYNNNNR 770 Query: 781 MDICVVRNTDDIKACGMAIGNQAMVNNPDSYKYLIGKAWKNTGINKTADNTTIAVNLGNN 840 MDICVVRNTDDIKACG AIGNQ+MVNNP++YKYL GKAWKN GI+KTA+ + I+V+ N Sbjct: 771 MDICVVRNTDDIKACGTAIGNQSMVNNPENYKYLEGKAWKNIGISKTANGSKISVHYLGN 830 Query: 841 STPTSSESNTTNLPTNTTNKVRFARYALIKNAPFAHYSATPNLVAINKHDFGTIESVFEL 900 STPT + NTTNLPTNTTNKVRFA YALIKNAPFA YSATPNLVAIN+HDFGTIESVFEL Sbjct: 831 STPTENGGNTTNLPTNTTNKVRFASYALIKNAPFARYSATPNLVAINQHDFGTIESVFEL 890 Query: 901 ANRSKDIDTLYANSGAQGRDLLQTLLIDSHNAGYARTMIDATSANEITKQLNEANSALNN 960 ANRS DIDTLYANSGAQGRDLLQTLLIDSH+AGYARTMIDATSANEITKQLN A + LNN Sbjct: 891 ANRSNDIDTLYANSGAQGRDLLQTLLIDSHDAGYARTMIDATSANEITKQLNTATTTLNN 950 Query: 961 IASLDHKTSGLQTLSLSNAMILNSRLVNLSRKHTNHIDSFAKRLQALKDQRFASLESAAE 1020 IASL+HKTSGLQTLSLSNAMILNSRLVNLSR+HTNHIDSFAKRLQALKDQRFASLESAAE Sbjct: 951 IASLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFASLESAAE 1010 Query: 1021 VLYQFAPKYEKPTNVWANAIGGASLNNGGNASLYGTSAGVDAYLDGEVEAIVGGFGSYGY 1080 VLYQFAPKYEKPTNVWANAIGG SLN+GGNASLYGTSAGVDAYL+GEVEAIVGGFGSYGY Sbjct: 1011 VLYQFAPKYEKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGY 1070 Query: 1081 SSFSNQANSLNSGANNANFGVYSRIFANQHEFDFEAQGAVGSDQSSLNFKSALLRDLNQS 1140 SSFSNQANSLNSGANN NFGVYSRIFANQHEFDFEAQGA+GSDQSSLNFKSALLRDLNQS Sbjct: 1071 SSFSNQANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQS 1130 Query: 1141 YNYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFESNSTHKVALKNGASSQ 1200 YNYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNF+SNS KVALKNGASSQ Sbjct: 1131 YNYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSNQKVALKNGASSQ 1190 Query: 1201 HLFNASANVEARYYYGDTSYFYMNAGVLQEFAQLGSNNAASLNTFKVNVARNPLNTHARV 1260 HLFNASANVEARYYYGDTSYFYMNAGVLQEFA GS+NA SLNTFKVN RNPLNTHARV Sbjct: 1191 HLFNASANVEARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNATRNPLNTHARV 1250 Query: 1261 MMGGELQLAKEVFLNLGFIYLHNLISNASHFASNLGMRYSF 1301 MMGGEL+LAKEVFLNLGF+YLHNLISN HFASNLGMRYSF Sbjct: 1251 MMGGELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 808 bits (2089), Expect = 0.0 Identities = 224/1062 (21%), Positives = 452/1062 (42%), Gaps = 73/1062 (6%) Query: 5 IIDLSVKNKLLTTLVTLLIFLASLWAIKSVRLDALPDLSPAQVVVQITYPNQSPKVVQEQ 64 + + ++ + ++ +++ +A AI + + P ++P V V YP + VQ+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTYPLVSTFMSIANIDTVRGIS-SYESGLIYIIFKDGVNLYWARDRVLEQLNRALN-LPK 122 VT + I N+ + S S S I + F+ G + A+ +V +L A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 123 DAKV-EIGSDSTSIGWAYQYALSSDSKNLS--DLKVLQDFYYRYALLGVDGVSEVASVGG 179 + + I + +S + SD+ + D+ + L ++GV +V G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 FVKDYEVTLQNDSLIRYNLSLEQVANAIKNSNNDTGGGVI------LENGFEKIIRSHGY 233 + L D L +Y L+ V N +K N+ G + I + Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 IQSLKDLEEIVVK-KEGAIPLKIKDIASVRLTPKPRRGVANLNGDKEVVGGIVMVRYHAD 292 ++ ++ ++ ++ +++KD+A V L + +A +NG K G + + A+ Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARING-KPAAGLGIKLATGAN 298 Query: 293 TYKVLKAIKEKIATLQASNP-DVKITSVYDRSELIEKGIDNLIHTLIEESVIVLVIIAIF 351 KAIK K+A LQ P +K+ YD + ++ I ++ TL E ++V +++ +F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 352 LLHFRSALVVIITLPLSVCISFLLMRYFNIEASIMSLGGIAIAIGAMVDAAIVMVENAHK 411 L + R+ L+ I +P+ + +F ++ F + +++ G+ +AIG +VD AIV+VEN + Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 412 HLQHIDVKDNAQRVNAIMQGVKHVGGAIFFALMIIVVSFLPIFALTGQEEKLFAPLAYTK 471 + +D A + + + GA+ M++ F+P+ G ++ + T Sbjct: 419 VMM----EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 472 TFAMLVGALLSITMVPILMVWLIKGRILEESKNPINAFF----------MKIYGVSLNVV 521 AM + L+++ + P L L+K E +N FF + Y S+ + Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENK-GGFFGWFNTTFDHSVNHYTNSVGKI 533 Query: 522 LKFRYAFLIAIVVGLGGLYVAYQKLNWEFIPQINEGVVMYMPVTINGVGID-------TA 574 L +L+ + + G+ V + +L F+P+ ++GV + M G + Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593 Query: 575 LEYLKKSNSAIKRLDFVKQVFGKVGRANTSTDAAGLAMIETYIELKPQNEWKEKLSYKEV 634 +Y K+ A F F G+A + A ++ LKP W+E+ + Sbjct: 594 TDYYLKNEKANVESVFTVNGFSFSGQAQNAGMA--------FVSLKP---WEERNGDENS 642 Query: 635 RDKL--EKTLQLKGLTNSWTYPIRGRTDMLLTGIRTPLGIKL-------YGNDTDKLQEL 685 + + ++L + + + P + L G T +L + T +L Sbjct: 643 AEAVIHRAKMELGKIRDGFVIPFNMPAIVEL-GTATGFDFELIDQAGLGHDALTQARNQL 701 Query: 686 AILMEQQLKTLKESLSVFAERSNNGYYITLDLNDENLARYGINKNAVLDTIKFALGGTTL 745 + Q +L +SV + L+++ E G++ + + TI ALGGT + Sbjct: 702 LGMAAQHPASL---VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYV 758 Query: 746 TTMIKGVENYPISLRLEDTERNTIEKLQNLYIKTAYNYM-PLRELARIYYDNSPAVLKSE 804 I + ++ + R E + LY+++A M P ++ L+ Sbjct: 759 NDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERY 818 Query: 805 KGLNVNFIYIVPQANISSDTYRQLAQKALEKIKLPSGYYYEFSGESQYLEEAFKTLQYIV 864 GL I SS L + KLP+G Y+++G S + +V Sbjct: 819 NGLPSMEIQGEAAPGTSSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALV 876 Query: 865 PVSVFIIFILIVFALKNLTNSLLCFFTLPFAFLGGLIFMNIMGFNMSVAALVGFLALLGV 924 +S ++F+ + ++ + + +P +G L+ + V +VG L +G+ Sbjct: 877 AISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGL 936 Query: 925 ASETAIVMIIYLEDAFQKFIKTPLKEQNSAALKEAIMHGAVLRVRPKLMTFFSILASLIP 984 +++ AI+++ + +D L E+ + EA + +R+RP LMT + + ++P Sbjct: 937 SAKNAILIVEFAKD---------LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLP 987 Query: 985 IMYSHGTGSEIMKSIAAPMLGGMISSVVLTLFIIPTAYFVIK 1026 + S+G GS ++ ++GGM+S+ +L +F +P + VI+ Sbjct: 988 LAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIR 1029
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 27.9 bits (62), Expect = 0.035 Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 6/88 (6%) Query: 144 FGSLVGSLVGTHFSFD---TQGMEFVMTAIFIVLFMEQYKRNTNHKN--AWLGIFIAVVC 198 G +G ++ + + M ++T F++ +++ R H + + + + +V Sbjct: 154 VGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 199 LALFGTEYFLLIALVLMVLALILFKKQL 226 LF T Y + L++ VL+ ++F K + Sbjct: 214 FMLFTTSYSISF-LIVSVLSFLIFVKHI 240
>cloacin#Cloacin signature. Length = 551 Score = 35.1 bits (80), Expect = 4e-04 Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 9/99 (9%) Query: 28 AKLSRSNEQLSDMLYKLNESLRIYQSVLSNNQDQL----KEIKKANSTLNSQRRFFNASQ 83 ++L +N+ L+D + ++ + R ++ + ++A + +N+++ F+A+ Sbjct: 356 SELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAA 415 Query: 84 IRLMDTDALLKQSALELEKLQALEKRLKERMEQERLIEE 122 D DA L SA+E K +K K+R + L +E Sbjct: 416 KEKSDADAAL-SSAMESRK----KKEDKKRSAENNLNDE 449
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 47.1 bits (112), Expect = 3e-09 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 11 ALYGGSFDPLHKAHLAIIDQTLELLPFAKLIVLPAYQNPFKKPCFLDAQTRFKELERALK 70 A+Y GSFDP+ HL II++ L F ++ V +NP K+P F Q R +++ +A+ Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRL--FDQVYVAVL-RNPNKQPMF-SVQERLEQIAKAIA 58 Query: 71 GMDRVLLSDFE 81 + + FE Sbjct: 59 HLPNAQVDSFE 69
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.013 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 35.7 bits (82), Expect = 2e-04 Identities = 29/183 (15%), Positives = 78/183 (42%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQAAVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + +K R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQVY 277 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.2 bits (78), Expect = 6e-04 Identities = 31/183 (16%), Positives = 74/183 (40%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 217 + A LA+ ++ + +K R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWISPLSPEDVLNNPKFSTIKAIKNKQVY 275 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.031 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217