>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 29.5 bits (66), Expect = 0.029 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 15/58 (25%) Query: 227 SGAYIDGVGLSDAQAEPVVQFLIAKGASNAETLENLRGAVGESAIGAEGIGELAEIAG 284 S AY GLS+ +A+ VV +LI+KG + I A G+GE + G Sbjct: 266 SDAY--NQGLSERRAQSVVDYLISKG-------------IPADKISARGMGESNPVTG 308
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 101 bits (254), Expect = 7e-24 Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 380 DDTLTGGAGNDALYGGVGNDTLYGGDGDDLIDGGDGDDMIDAGLGIDIDTIFGGAGNDTI 439 D G G+D + G GND LYG G+D + GG+GDD + GG GND + Sbjct: 737 TDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLY-----------GGDGNDKL 785 Query: 440 NSGDGIDWVYGGDGDDSIDAANG---FDRVFGGAGNDTIDGGATSDTIYGGAGNDSILGG 496 G +++ GGDGDD + +FGG GND + G +D + GG G+D + GG Sbjct: 786 IGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGG 845 Query: 497 GGSKSYDLIFGEDGADTI-EGGAGDDVIHGDNV 528 G+ Y G I + G +D + ++ Sbjct: 846 YGNDIY-RYLSGYGHHIIDDDGGKEDKLSLADI 877 Score = 91.2 bits (226), Expect = 2e-20 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 29/154 (18%) Query: 383 LTGGAGNDALYGGVGNDTLYGGDGDDLIDGGDGDDMIDAGLGIDIDTIFGGAGNDTINSG 442 L G D +G D +G DGDDLI+G DG+D + Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRL----------------------- 758 Query: 443 DGIDWVYGGDGDDSIDAANGFDRVFGGAGNDTIDGGATSDTIYGGAGNDSILGGGGSKSY 502 YG G+D++ NG D+++GG GND + G A ++ + GG G+D G S + Sbjct: 759 ------YGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAK 812 Query: 503 DLIFGEDGADTIEGGAGDDVIHGDNVATSITNGD 536 +++FG G D + G G D++ G + G Sbjct: 813 NVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGY 846 Score = 91.2 bits (226), Expect = 2e-20 Identities = 52/150 (34%), Positives = 72/150 (48%), Gaps = 12/150 (8%) Query: 377 GGGDDTLTGGAGNDALYGGVGNDTLYGGDGDDLIDGGDGDDMIDA-GLGIDIDTIFGGAG 435 G+DTL+GG G+D LYGG GND L G G++ ++GGDGDD G + + +FGG G Sbjct: 761 DKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKG 820 Query: 436 NDTINSGDGIDWVYGGDGDDSIDAANGFDRVFGGAGNDTIDGGATS--DTIYGGAGNDSI 493 ND +YG +G D +D G D + GG GND + I G + Sbjct: 821 NDK---------LYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDK 871 Query: 494 LGGGGSKSYDLIFGEDGADTIEGGAGDDVI 523 L D+ F +G D I +V+ Sbjct: 872 LSLADIDFRDVAFKREGNDLIMYKGEGNVL 901 Score = 80.0 bits (197), Expect = 5e-17 Identities = 36/116 (31%), Positives = 58/116 (50%) Query: 428 DTIFGGAGNDTINSGDGIDWVYGGDGDDSIDAANGFDRVFGGAGNDTIDGGATSDTIYGG 487 D FG D + DG D + G DG+D + G D + GG G+D + GG +D + G Sbjct: 729 DKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGV 788 Query: 488 AGNDSILGGGGSKSYDLIFGEDGADTIEGGAGDDVIHGDNVATSITNGDFENALTG 543 AGN+ + GG G + + + + GG G+D ++G A + G+ ++ L G Sbjct: 789 AGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKG 844 Score = 79.2 bits (195), Expect = 7e-17 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 669 NIAFNNGSGDDIIDGEDGNDLIFGGADDDLILGGAGNDTIDGGLGRDTITGGDGDDLMTG 728 F+ GDD+I+G DGND ++G +D + GG G+D + GG G D + G G++ + G Sbjct: 737 TDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNG 796 Query: 729 GSDGYDIFYIDGNDGDDTIHSAGYSNWLVFENVGA 763 G DG D F + GN + G N ++ + GA Sbjct: 797 G-DGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGA 830 Score = 62.3 bits (151), Expect = 1e-11 Identities = 44/128 (34%), Positives = 57/128 (44%), Gaps = 20/128 (15%) Query: 376 TGGGDDTLTGGAGND------------ALYGGVGNDTLYGGDGDDLIDGGDGDDMIDAGL 423 G++ L GG G+D L+GG GND LYG +G DL+DGG+GDD++ G Sbjct: 787 GVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGY 846 Query: 424 GIDIDTIFGGAGNDTINSGDGIDWVYGGDGDDSIDAANGFDRV-FGGAGNDTIDGGATSD 482 G DI G G+ I+ GG D A F V F GND I + Sbjct: 847 GNDIYRYLSGYGHHIIDD-------DGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGN 899 Query: 483 TIYGGAGN 490 + G N Sbjct: 900 VLSIGHKN 907 Score = 59.2 bits (143), Expect = 9e-11 Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 19/183 (10%) Query: 377 GGGDDTLTGGAGNDALYGGVGNDTLYGGDGDDLIDGGDGDDMIDAG-------LGIDIDT 429 G GDD + AG+ +Y G G+D +Y D DG +AG LG D+ Sbjct: 617 GDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKV 676 Query: 430 IFGGAGNDTINSGDGIDWV---------YGGDGDDSIDAANGFDRVFGGAGNDTIDGGAT 480 + ++ G + G D + + G D G Sbjct: 677 LQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKF 736 Query: 481 SDTIYGGAGNDSILGGGGSKSYDLIFGEDGADTIEGGAGDDVIHGDNVATSITNGDFENA 540 +D +G G+D I G G+ D ++G+ G DT+ GG GDD ++G + + N Sbjct: 737 TDIFHGADGDDLIEGNDGN---DRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNY 793 Query: 541 LTG 543 L G Sbjct: 794 LNG 796 Score = 57.7 bits (139), Expect = 3e-10 Identities = 46/194 (23%), Positives = 71/194 (36%), Gaps = 21/194 (10%) Query: 675 GSGDDIIDGEDGNDLIFGGADDDLILGGAGNDTIDGGLGRDTITGGDGDDLMTGGS---- 730 + D G D+ G DDLI G GND + G G DT++GG+GDD + GG Sbjct: 725 TTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDK 784 Query: 731 --DGYDIFYIDGNDGDDTIHSAGYSNWLVFENVGATDGVTVAHADFGLTGSYAFSGVGGT 788 Y++G DGDD G S G + +G G+ G G Sbjct: 785 LIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKL-----YGSEGADLLDGGEGD 839 Query: 789 ATGTFDNIFSIQGTENDDVFDATAVTLNSTRANFVSNGGDDQFLFGDNGNFDVYLASGDN 848 ++G +D++ + + + G +D+ D DV N Sbjct: 840 DL--------LKGGYGNDIYRYLSGYGHHIIDD--DGGKEDKLSLADIDFRDVAFKREGN 889 Query: 849 TITSTGAKVEVFAI 862 + + V +I Sbjct: 890 DLIMYKGEGNVLSI 903 Score = 57.3 bits (138), Expect = 3e-10 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 17/130 (13%) Query: 658 GNDNSEGALLDNIAFNNGSGDDIIDGEDGNDLIFGGA----------DDDLILGGAG--N 705 GND G ++ + G+GDD + G DGND + G A DD+ + G Sbjct: 754 GNDRLYGDKGNDT-LSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAK 812 Query: 706 DTIDGGLGRDTITGGDGDDLMTGGSDGYDIFYIDGNDGDDT-IHSAGYSNWLVFENVGAT 764 + + GG G D + G +G DL+ GG + G G+D + +GY + ++ ++ G Sbjct: 813 NVLFGGKGNDKLYGSEGADLLDGGEGDDLLK---GGYGNDIYRYLSGYGHHIIDDDGGKE 869 Query: 765 DGVTVAHADF 774 D +++A DF Sbjct: 870 DKLSLADIDF 879 Score = 54.2 bits (130), Expect = 3e-09 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 7/98 (7%) Query: 133 DVETTLTHGFDIDFTDSANTVGTYDGSDRAEVLDAS-------GTTTGQDLSGDGGNDSI 185 E T +G ++ TD+ +V G+ RA+ S G + G+ GND + Sbjct: 699 SYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRL 758 Query: 186 YGGSGDDTLSGGEQSDLVIGGAGSDQIDGGAGADTLHG 223 YG G+DTLSGG D + GG G+D++ G AG + L+G Sbjct: 759 YGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNG 796 Score = 52.7 bits (126), Expect = 1e-08 Identities = 47/179 (26%), Positives = 68/179 (37%), Gaps = 35/179 (19%) Query: 681 IDGEDGNDLIFGGADDDLILGGAGNDTIDGGLGRDTITGGDGDDLMTGGSDGYDIFYIDG 740 + G D FG D+ G G+D I+G G D + G G+D ++GG +G D + G Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGG-NGDD--QLYG 778 Query: 741 NDGDDTIHSAGYSNWLVFENVGATDGVTVAHADFGLTGSYAFSGVGGTATGTFDNIFSIQ 800 DG+D + +N+L G G F G N+ Sbjct: 779 GDGNDKLIGVAGNNYLN-----------------GGDGDDEFQVQGN---SLAKNVLF-G 817 Query: 801 GTENDDVFDATAVTLNSTRANFVSNGGDDQFLFGDNGNFDVYL---ASGDNTITSTGAK 856 G ND ++ S A+ + G D L G GN D+Y G + I G K Sbjct: 818 GKGNDKLY-------GSEGADLLDGGEGDDLLKGGYGN-DIYRYLSGYGHHIIDDDGGK 868 Score = 50.7 bits (121), Expect = 4e-08 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 17/89 (19%) Query: 148 DSANTVGTYDGSDRAEVLDASGTTTGQDLSGDGGNDSIYGGSGDDTLSGGEQSDLVIGGA 207 D + + DG+DR G LSG G+D +YGG G+D L G ++ + GG Sbjct: 744 DGDDLIEGNDGNDRL-----YGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGD 798 Query: 208 GSD------------QIDGGAGADTLHGD 224 G D + GG G D L+G Sbjct: 799 GDDEFQVQGNSLAKNVLFGGKGNDKLYGS 827 Score = 47.7 bits (113), Expect = 4e-07 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 10/111 (9%) Query: 654 FTEVGNDNSEGALLDNI--AFNNGSGDDIIDGEDGNDLIFGGADDDLILGGAGNDTIDGG 711 GN+ G D+ N +++ G GND ++G DL+ GG G+D + GG Sbjct: 786 IGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGG 845 Query: 712 LGRDTITGGDGDDLMTGGSDGYDIFYIDGNDGDDTIHSAGYSNWLVFENVG 762 G D G G+ I DG D + + F+ G Sbjct: 846 YGNDIYRYLSG--------YGHHIIDDDGGKEDKLSLADIDFRDVAFKREG 888 Score = 46.9 bits (111), Expect = 6e-07 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 998 GSTRADIVDAGGGNDTLLGGDGDDQLTGGAGDDIFVYTSGDGLDTITDFNAGNTGTLNDE 1057 G D + G D L GG+GDD L GG G+DI+ Y SG G I D + G L+ Sbjct: 817 GGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDD-DGGKEDKLSLA 875 Query: 1058 DSGNND 1063 D D Sbjct: 876 DIDFRD 881 Score = 46.1 bits (109), Expect = 9e-07 Identities = 37/124 (29%), Positives = 50/124 (40%), Gaps = 15/124 (12%) Query: 366 DNVVITPVTPTGGGDDTLTGGAGNDALYGGVGNDTLYGGDGDDLI-------------DG 412 N + V G G+D L G G D L GG G+D L GG G+D+ DG Sbjct: 807 GNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDG 866 Query: 413 GDGDDMIDAGLGIDIDTIFGGAGNDTINSGDGIDWVYGGDGDDSIDAANGFDRVFGGAGN 472 G D + A + D F GND I + + G + I N F++ G N Sbjct: 867 GKEDKLSLADIDFR-DVAFKREGNDLIMYKGEGNVLSIGH-KNGITFRNWFEKESGDISN 924 Query: 473 DTID 476 I+ Sbjct: 925 HEIE 928 Score = 43.0 bits (101), Expect = 9e-06 Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 5/98 (5%) Query: 1003 DIVDAGGGNDTLLGGDGDDQLTGGAGDDIFVYTSGDGLDTITDFNAGNTGTLNDE----- 1057 D + G GND L+G G++ L GG GDD F + GN E Sbjct: 774 DQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLL 833 Query: 1058 DSGNNDFIDLSGYYDHISELYADQADDGILNQSNTTDT 1095 D G D + GY + I + I + D Sbjct: 834 DGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDK 871 Score = 41.9 bits (98), Expect = 2e-05 Identities = 47/215 (21%), Positives = 64/215 (29%), Gaps = 65/215 (30%) Query: 419 IDAGLGIDIDTIFGGAGNDTINSGDGIDWVYGGDGDD---SIDAANGF------------ 463 I++ LG D +F AG+ I +G G D VY D +ID Sbjct: 612 IESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLG 671 Query: 464 ------------------------------DRVFGGAGNDTID---------GGATSDTI 484 G D G +D Sbjct: 672 GDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKF 731 Query: 485 YGGAGNDSILGGGGSKSYDLIFGEDGADTIEGGAGDDVIHGDNVATSITNGDFENALTGW 544 +G D G G DLI G DG D + G G+D + G N + GD + L G Sbjct: 732 FGSKFTDIFHGADGD---DLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIG- 787 Query: 545 TAVSPETGPEDVYLGNGSTNIVFEMDAVSGQTTVL 579 + YL G + F++ S VL Sbjct: 788 -------VAGNNYLNGGDGDDEFQVQGNSLAKNVL 815 Score = 41.5 bits (97), Expect = 2e-05 Identities = 58/257 (22%), Positives = 96/257 (37%), Gaps = 37/257 (14%) Query: 692 GGADDDLILGGAGNDTIDGGLGRDTITGGDGDDLMTGGSDGYDIFYIDGND----GDDTI 747 G DD + AG+ I G G D + D IDG G+ T+ Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTD---------TGYLTIDGTKATEAGNYTV 666 Query: 748 HSAGYSNWLVFENVGATDGVTVAHADFGLT-GSYAFSGVGGTATGTFDNIFSIQ---GTE 803 + V + V V+V SY F+ + G DN++S++ GT Sbjct: 667 TRVLGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTT 726 Query: 804 NDDVFDATAVTLNSTRANFVSNGGD-DQFLFGDNGNFDVYLASGDNTITSTGAKVEVFAI 862 D F ++ + +G D D + G++GN +Y G++T++ +++ Sbjct: 727 RADKF-------FGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYG- 778 Query: 863 ESGWATETWTGTDVGNNTITTGAADDYFEFWGADATWTGSATVSAGAGHDFFITDNMT-- 920 G + G GNN + G DD F+ G + G G+D Sbjct: 779 --GDGNDKLIGVA-GNNYLNGGDGDDEFQVQGNS---LAKNVLFGGKGNDKLYGSEGADL 832 Query: 921 ---GDFTWVLEDGFGND 934 G+ +L+ G+GND Sbjct: 833 LDGGEGDDLLKGGYGND 849 Score = 39.9 bits (93), Expect = 8e-05 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 12/60 (20%) Query: 176 LSGDGGNDSIYGGSGDD------------TLSGGEQSDLVIGGAGSDQIDGGAGADTLHG 223 L G GN+ + GG GDD L GG+ +D + G G+D +DGG G D L G Sbjct: 785 LIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKG 844 Score = 39.6 bits (92), Expect = 9e-05 Identities = 18/47 (38%), Positives = 25/47 (53%) Query: 174 QDLSGDGGNDSIYGGSGDDTLSGGEQSDLVIGGAGSDQIDGGAGADT 220 Q + ++GG G+D L G E +DL+ GG G D + GG G D Sbjct: 804 QVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDI 850 Score = 39.2 bits (91), Expect = 1e-04 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Query: 998 GSTRADIVDAGGGNDTLLGGDGDDQLTGGAGDDIFVYTSGDGLDTITDFNAGNTGTLNDE 1057 GS DI G+D + G DG+D+L G G+D +GD D G G ND+ Sbjct: 733 GSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGD------DQLYGGDG--NDK 784 Query: 1058 DSGNNDFIDLSG 1069 G L+G Sbjct: 785 LIGVAGNNYLNG 796 Score = 38.4 bits (89), Expect = 2e-04 Identities = 18/52 (34%), Positives = 26/52 (50%) Query: 174 QDLSGDGGNDSIYGGSGDDTLSGGEQSDLVIGGAGSDQIDGGAGADTLHGDN 225 ++L G D +G D G + DL+ G G+D++ G G DTL G N Sbjct: 720 EELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGN 771
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1064 bits (2754), Expect = 0.0 Identities = 436/570 (76%), Positives = 493/570 (86%), Gaps = 1/570 (0%) Query: 1 MPVQIPRTQYAAMYGPTTGDRLRLADTDLIIEVERDLTIYGEEVKFGGGKTIRDGMGQSQ 60 M ++ R YA M+GPT GD++RLADT+L IEVE+D T +GEEVKFGGGK IRDGMGQSQ Sbjct: 1 MSYRMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQ 60 Query: 61 VTRAGGAVDTVITNALIVDHSGIYKADVALKDGLIHAIGKAGNPDTQSGVDIIVGPGTEV 120 VTR GGAVDTVITNALI+DH GI KAD+ LKDG I AIGKAGNPD Q GV IIVGPGTEV Sbjct: 61 VTREGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEV 120 Query: 121 IAGEGRILTAGGMDSHIHFICPQQMEDSLHSGVTTCFGGGTGPAHGTLATTCTPGPWNIG 180 IAGEG+I+TAGGMDSHIHFICPQQ+E++L SG+T GGGTGPAHGTLATTCTPGPW+I Sbjct: 121 IAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIA 180 Query: 181 RMLQSFDGIPMNIGLSGKGNASQPEALIEMVKGGACALKLHEDWGTTPAAIDCCLSVADD 240 RM+++ D PMN+ +GKGNAS P AL+EMV GGA +LKLHEDWGTTPAAIDCCLSVAD+ Sbjct: 181 RMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADE 240 Query: 241 MDVQVMIHTDTLNESGFVEHTIGALKGRTIHAFHTEGAGGGHAPDIIKICGDANVLPSST 300 DVQVMIHTDTLNESGFVE TI A+KGRTIHA+HTEGAGGGHAPDII+ICG NV+PSST Sbjct: 241 YDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSST 300 Query: 301 NPTRPFTVNTLEEHLDMLMVCHHLDKSIPEDVAFAESRIRRETIAAEDILHDMGAFSIIA 360 NPTRP+TVNTL EHLDMLMVCHHL +IPED+AFAESRIR+ETIAAEDILHD+GAFSII+ Sbjct: 301 NPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIIS 360 Query: 361 SDSQAMGRVGEVLIRTWQTADKMKKQRGALPEETGENDNIRVRRYIAKYTINPAIAQGVS 420 SDSQAMGRVGEV IRTWQTADKMK+QRG L EETG+NDN RV+RYIAKYTINPAIA G+S Sbjct: 361 SDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLS 420 Query: 421 HVIGDISIGKRADLVLWNPAFFGVKPEMVLMAGSIVVAQMGDPNASIPTPQPVYSRPMFG 480 H IG + +GKRADLVLWNPAFFGVKP+MVL+ G+I A MGDPNASIPTPQPV+ RPMFG Sbjct: 421 HEIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFG 480 Query: 481 AYGSALRHTSVSFVSGAAQAAGIGQTLGLTKQTVAVRNTR-TIGKADMILNDALPKVEVH 539 AYG + ++SV+FVS A+ AG+ LG+ K+ VAV+NTR IGKA MI N P +EV Sbjct: 481 AYGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVD 540 Query: 540 PETYEVRADGVLLTCQPAAVLPMAQRYFMF 569 PETYEVRADG LLTC+PA VLPMAQRYF+F Sbjct: 541 PETYEVRADGELLTCEPATVLPMAQRYFLF 570
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 101 bits (253), Expect = 4e-28 Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 9/247 (3%) Query: 3 VLITAGASGIGRAMAEAFDAEGADVWVTDVDKKALANLPA-------HWGAADVDASNEA 55 IT A GIG A+A ++GA + D + + L + + H A D + A Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 56 AMADFFAELEARWGRLDVLCANAGIAGPTAPVEEIALADWQRCVSVNLEGAFLAARYATP 115 A+ + A +E G +D+L AG+ P + ++ +W+ SVN G F A+R + Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 116 IMKTALSGSIVLTSSTAGQYGYPFRAPYAAAKWAVIGLMKTLAMELGPYGIRANAICPGA 175 M SGSIV S A YA++K A + K L +EL Y IR N + PG+ Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 176 VEGERMEGVLAREALAKGMTRDAVYQGYASGTSMRSFVTAEDVANMAVFLGSDKARLVSG 235 E + + A E A+ + + ++ + +G ++ D+A+ +FL S +A ++ Sbjct: 190 TETDMQWSLWADENGAEQVIKGSLET-FKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 236 QVIAVDG 242 + VDG Sbjct: 249 HNLCVDG 255
>cloacin#Cloacin signature. Length = 551 Score = 32.4 bits (73), Expect = 0.004 Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 19/209 (9%) Query: 254 AIQRLDADTTNEAAHKIYKKNIKIGYDPTEGVVRMEVIAADPIVATDFSKALI-SYAEER 312 A+Q L TN + G + + V+R + V S L ++R Sbjct: 240 AVQTLSPGVTNNTDKDVRPAGFTQGGNTRDAVIRFPKDSGHNAVYVSVSDVLSPDQVKQR 299 Query: 313 VDELS--QNIRNDA--MEDARRNLERAKVERREAQENLIRLQEVYSADPTEQLAALRTQI 368 DE + Q + +E A RN ERA+ E +A E++ R QE A + + ++++ Sbjct: 300 QDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQE-RQAKAVQVYNSRKSEL 358 Query: 369 TSYDQQLLEKKLALQALLDNPRPNQAKVDGARGDVRRLQDVLTGLNARMIEADSSGLSLV 428 + ++ L + ++ D G R Q + GL A+ + D + Sbjct: 359 DAANKTLADAIAEIKQFNRFAH------DPMAGGHRMWQ--MAGLKAQRAQTD-----VN 405 Query: 429 QQSTEIELARADLATADAFLQSALQGEKQ 457 + + A + + ADA L SA++ K+ Sbjct: 406 NKQAAFDAAAKEKSDADAALSSAMESRKK 434
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 43.8 bits (103), Expect = 4e-07 Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 41 SAVDLMPETAIFPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPITSVDKAASNVQKP 95 + DL P A+ P PEP EPEPEPEP PEP E P +P V+K Sbjct: 51 TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 106 Score = 42.3 bits (99), Expect = 1e-06 Identities = 21/51 (41%), Positives = 27/51 (52%) Query: 31 VEEEETPVEASAVDLMPETAIFPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 81 V E P + +V ++ + P +P PEP EPEPEPEP PEP E Sbjct: 35 VIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEA 85 Score = 40.4 bits (94), Expect = 6e-06 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 39 EASAVDLMPETAIFPEPEPEPEPEPEPE---PEPEPEPEPEPEPEPITSVDKAASNVQKP 95 AV PE + PEPEPEP PEP E +P+P+P+P+P+P+ V + KP Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKP 116 Query: 96 G 96 Sbjct: 117 V 117 Score = 40.0 bits (93), Expect = 8e-06 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 32 EEEETPVEASAVDLMPETAIFPEPEPEPEPEPEPEPEPEPEPEPEPEPEPITSVDKAASN 91 E VE P+ P +P+P+P+P+P+P + + +P V S Sbjct: 63 PPPEPVVEPEPEP--EPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Query: 92 VQKP 95 P Sbjct: 121 PASP 124 Score = 37.7 bits (87), Expect = 4e-05 Identities = 14/65 (21%), Positives = 30/65 (46%) Query: 31 VEEEETPVEASAVDLMPETAIFPEPEPEPEPEPEPEPEPEPEPEPEPEPEPITSVDKAAS 90 E E + P+ A +P+P+P+P+P+P + + +P+ + +P+ S + Sbjct: 66 EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPF 125 Query: 91 NVQKP 95 P Sbjct: 126 ENTAP 130 Score = 33.0 bits (75), Expect = 0.001 Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 32 EEEETPVEASAVDLMPETAIFPEPEPEPEPEPEPEPEPEPEPEPEPEPEPITSVDKAA 89 E A ++ + P+P+P+P + + +P+ + +P P + A Sbjct: 75 PEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPAR 132
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 291 bits (747), Expect = 3e-91 Identities = 116/477 (24%), Positives = 188/477 (39%), Gaps = 93/477 (19%) Query: 323 EAQASAARAEPCVLVRRETSPEDIRGMH--VAVAVLTERGGMTSHAAVIGRGMGLPCVVG 380 E + A AE V++ + +P D ++ T+ GG TSH+A++ R + +P VVG Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 381 ASSLVFNLQKKTLTSSDGRVFKEGDTITVDGTSGDVLVG----EPAMLEATHDDAFLELM 436 + + + GD + VDG G V+V E E + Sbjct: 206 TKEVTEKI-------------QHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQ 252 Query: 437 EWSDAA---------RDIGVRANADTPNDAITARNFGAEGIGLCRTEHMFFEADRLTPMR 487 EW+ + + AN TP D G EGIGL RTE ++ + D+L P Sbjct: 253 EWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQL-PTE 311 Query: 488 EMIFADKPQDRRAALERLLPMQRDDFTELFRIMQGKPVCIRLLDPPLHEFLPHDKVGCRE 547 E Q + + E+ + M GKPV IR LD + L + Sbjct: 312 EE-------------------QFEAYKEVVQRMDGKPVVIRTLDIGGDKELSY------- 345 Query: 548 LAEALDLPLSDVTRRVEALGEYNPMLGMRGVRLGVTVPEIYDMQARAIFEATIAASRDGD 607 L L E NP LG R +RL + +I+ Q RA+ A+ + Sbjct: 346 ------LQLPK---------ELNPFLGFRAIRLCLEKQDIFRTQLRALLRASTYGN---- 386 Query: 608 PVVPEIMIPLVSAMREVELVKTRIDAVAAAVRTETGEDFE-FRLGVMVETPRAALRAEEI 666 ++M P+++ + E+ K + + +E + + +G+MVE P A+ A Sbjct: 387 ---LKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLF 443 Query: 667 APYVSFLSFGTNDLTQMTYGLSRDDAGRFMSTYVQQGVYPEDPFHTLDIEGVGELLEIGA 726 A V F S GTNDL Q T R + + Y P+H + V +++ Sbjct: 444 AKEVDFFSIGTNDLIQYTMAADRMNE---------RVSYLYQPYHPAILRLVDMVIKAAH 494 Query: 727 TRGRKAEPDLVLSICGEHGGNPESIAFCRNAGFNYVSCSPFRVPVARLAAAQLALRD 783 + G+ + +CGE G+ +I G + S S + AR +L+ + Sbjct: 495 SEGKW------VGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKEE 545
>PF05043#Transcriptional activator Length = 493 Score = 27.2 bits (60), Expect = 0.027 Identities = 7/36 (19%), Positives = 19/36 (52%) Query: 10 KILRALVRDASKSSKSLGEELGLSQPAVWRRIKRLK 45 IL + + ++S+ +E +S +++R I ++ Sbjct: 90 SILEFIFFNEGCQAESICKEFYISSSSLYRIISQIN 125
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 29.4 bits (66), Expect = 0.006 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 6/37 (16%) Query: 25 AKHAAALYLDGQVDRILLTGGIGQNPPSEAHVAAQIC 61 +AAA+ G VD I+ T GIG+N + I Sbjct: 314 GSYAAAM---GGVDVIVFTAGIGEN---GPEIREFIL 344
>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C signature. Length = 170 Score = 64.1 bits (156), Expect = 2e-15 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 3/138 (2%) Query: 24 KQISALGWLSFLASFCPLHRSYQGGALAELFIPAINNDCVRFFKNDAGQICAALIWARLS 83 K + LG +S+L + PLHR++ A +PAI + D + A WA LS Sbjct: 5 KPLEILGHVSWLWASSPLHRNWPVSLFAINVLPAIQANQYVLLTRDDYPV-AYCSWANLS 63 Query: 84 DDVSERMVFERKPPQASEWTSGKNLWFLDILAPFNHGTLIARHIARQPPDGPFFFARLGP 143 + + + + A +WTSG WF+D +APF + +++ ++ PD F R+ P Sbjct: 64 LENEIKYLNDVTSLVAEDWTSGDRKWFIDWIAPFGDNGALYKYMRKKFPDELFRAIRVDP 123 Query: 144 DGQVRKI--VRGDASNRK 159 V K+ G +++ Sbjct: 124 KTHVGKVSEFHGGKIDKQ 141
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 56.7 bits (137), Expect = 2e-11 Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 33/168 (19%) Query: 4 LKLLITGANGFLGRACVSAALTRGHSVRAL-------------VRSAAVFPEGVQVVQGD 50 +K L+TGA GF+G L GH V + R + G Q + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 51 LAVGCDAAWLT------GIDAVIHTAA------SVSNAPDALARDTLQATEKLIGAAVAA 98 LA D +T + V + S+ N P A A L ++ Sbjct: 61 LA---DREGMTDLFASGHFERVFISPHRLAVRYSLEN-PHAYADSNLTGFLNILEGCRHN 116 Query: 99 EQPPLMVLASSIAVYDADVSGAVDEGSPIETLIREREPYVGAKLAQEE 146 + ++ ASS +VY + ++ + Y K A E Sbjct: 117 -KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPV---SLYAATKKANEL 160
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 68.2 bits (166), Expect = 1e-15 Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 8/169 (4%) Query: 12 VAIVTGAGSGLGRALARGLAARGVRVAAFGRRLEPLQETA------AGHAGILPIACDVS 65 +A +TGA G+G A+AR LA++G +AA E L++ A HA P DV Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA--DVR 67 Query: 66 DPLALTKAFAQVRAELGPVLLLINNAAVYPRRDVFEDSQASFMATVATNLGGTFGATRLA 125 D A+ + A++ E+GP+ +L+N A V + S + AT + N G F A+R Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 126 LEDMADAGFGRIVNVTSFADIAPLPASGAYSVSKGAQRILTRVLLADLS 174 + M D G IV V S P + AY+ SK A + T+ L +L+ Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 29.0 bits (65), Expect = 0.016 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%) Query: 44 EAARVGRSYSWSFKRD-GAGWALVVP 68 A R+ R W K D G GW VVP Sbjct: 141 TAKRLAREKGWIVKEDSGRGWRRVVP 166
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.0 bits (70), Expect = 0.021 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 9/57 (15%) Query: 254 EVVREFFTSASLTALVDFPFLALFVTVIYMIGGPLAIVPLVAVPVVLIAGLIVQPFL 310 EVV+ F + L LV + FL ++P +AVPVVL+ + Sbjct: 339 EVVKTLFEAIMLVFLVMYLFLQNMRA---------TLIPTIAVPVVLLGTFAILAAF 386
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 227 bits (581), Expect = 1e-71 Identities = 86/427 (20%), Positives = 167/427 (39%), Gaps = 14/427 (3%) Query: 16 RSGRTGTYLLFAVGLVLMSVGYWAHLTEIDDVTRADARVVPSQLVQVVQAAETGTITEIG 75 R R Y + ++ + L +++ V A+ ++ S + ++ E + EI Sbjct: 55 RRPRLVAYFIMGFLVI---AFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEII 111 Query: 76 VKVGDIVEPGDVIMRLDPTLLHSELNTAQADAAALFIRQNRLKSQISGTDFN------MI 129 VK G+ V GDV+++L ++ Q+ + Q R + + N + Sbjct: 112 VKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLP 171 Query: 130 TEPETQDILDAEH----QLFLSLQEQLFADLLVLEARRDIKMAEIKGAEVGRDVAEENIA 185 EP Q++ + E L E D K AE + E Sbjct: 172 DEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSR 231 Query: 186 LLLEEIKVVEPLVEKRIESPLALISLRRQFAELNGRLRETETQIVMAQTAVTEIESQIVA 245 + + L+ K+ + A++ ++ E LR ++Q+ ++ + + + Sbjct: 232 VEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQL 291 Query: 246 RKRDQLTKAHQELTEVHARLASLETRIPALQTRLKRAEIRSPTRGIVNQVLFATLGGVAQ 305 + + +L + + L + + R + + IR+P V Q+ T GGV Sbjct: 292 VTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVT 351 Query: 306 QGQTVAEIVPFGDTVTVEAFVDPADIAFIRPNQEVKVRITAYDASRYGALDGAVTRIGAD 365 +T+ IVP DT+ V A V DI FI Q +++ A+ +RYG L G V I D Sbjct: 352 TAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLD 411 Query: 366 TVEAPDGERSVYVVEIRLQGTLTDADGVELEIIPGMIAQVDMLSQKKTVLAYLTQPVVRI 425 +E V+ V I ++ + + GM ++ + ++V++YL P+ Sbjct: 412 AIEDQRLG-LVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEES 470 Query: 426 KDRAFRD 432 + R+ Sbjct: 471 VTESLRE 477
>PF09025#YopR Core Length = 143 Score = 28.8 bits (64), Expect = 0.009 Identities = 24/76 (31%), Positives = 30/76 (39%) Query: 87 PGYPKPRVGESEAAGRYRAKRDAAHLDGLKMELPERQRRMGEYHAWVLGVPLSESAASPL 146 PG+ +AA + A L E P RR+ LG L + A PL Sbjct: 8 PGFAVYPSASPKAANLPAVDQVLAFEQALGGEPPAAGRRLAGLENGALGERLLQRFAQPL 67 Query: 147 VVWEGSHLKLAAMLRA 162 E L+L AMLRA Sbjct: 68 QGLEADRLELKAMLRA 83
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.1 bits (101), Expect = 2e-06 Identities = 36/181 (19%), Positives = 58/181 (32%), Gaps = 10/181 (5%) Query: 136 DASAPKAKAKASAAKPAVKS-TAAKAKGKAAATKTAAKTGGAKASTTTKAAAKPAVKTAE 194 D + A P+V S A+ A A ++ + T +K KT E Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 195 KPAA-AKSASKPATKKASDAKAPAKGTAAKPATAKAAAAKPAAKPAAKKTTAAV-KATTA 252 K A + + A +AK+ K A++ + + K TA V K A Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 253 KPATKAKA-APKAAAKAASKTASKTAAKPAAKA------TAKAAAKPAGEKKPRTLSAPR 305 K T+ PK ++ + K +P A+ T + P Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 306 K 306 K Sbjct: 1173 K 1173
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.9 bits (64), Expect = 0.007 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 4/84 (4%) Query: 51 GDLVQFVVTMDGEAMPDDVRRYTECA----AAQYSLIRGYGFARHLRTNVEIKGGQWRGD 106 G+L Q + + + + + E A A+ + + Y H+R N IK G Sbjct: 984 GNLEQTIDKLKDSTKHNPMNLWVESAKKVPASLSAKLDNYATNSHIRINSNIKNGAINEK 1043 Query: 107 AVYTISAALPRGLKTIDAEVIVHN 130 A ++ P LK ++ +++ HN Sbjct: 1044 ATGMLTQKNPEWLKLVNDKIVAHN 1067
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 26.9 bits (59), Expect = 0.047 Identities = 15/44 (34%), Positives = 23/44 (52%) Query: 37 AKAALKSADQVIVTLPNADHPRVKSLAGLHVDIMFVPEHAAGMS 80 AK ++ A VTLP + +V SL H+ + +P AA M+ Sbjct: 150 AKESVYKAFSDRVTLPGFNSAKVTSLTATHISLHLLPAFAATMA 193
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 112 bits (282), Expect = 6e-27 Identities = 82/349 (23%), Positives = 127/349 (36%), Gaps = 41/349 (11%) Query: 1011 DRDNVSGGAGDDIIRTGDDRDTITGGTGDDTIFAGIDDDEVFGNEGNDSIVDIQGADFIV 1070 D N+ A + + R G GDD +F ++ +G+D + + + Sbjct: 592 DYSNLIQHASVGNNQYREIRIESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYL 651 Query: 1071 GGDGDDTIEAGTNTFSDYIGDDPNLPVAGFPDILTD-PNTTDGL------DTVFGGAGND 1123 DG EAG T + +G D + + T+ T G Sbjct: 652 TIDGTKATEAGNYTVTRVLGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLT 711 Query: 1124 VISTGDDADEIDGGTGNDTIDGGIDDDTITGGTGDDSIIGQHGADSIFGNDGDDFINAGG 1183 +E+ G T D G D G GDD I G G D ++G+ G+D ++ G Sbjct: 712 ETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGG- 770 Query: 1184 STYGGNEPDATDILPENDRDFADGGAGNDTIFGEDDDDTLIGGDGDD---FLDGGIDEDS 1240 N D GG GND + G ++ L GGDGDD + ++ Sbjct: 771 ----------------NGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNV 814 Query: 1241 LTGGNGSDTGIGGQGDDFIDLSGFLEEPDSTDPNPGNDRDLAEGGDGNDVIDSSGGDNLT 1300 L GG G+D G +G D +D E D GND G G+ +ID GG Sbjct: 815 LFGGKGNDKLYGSEGADLLDGG---EGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKE-- 869 Query: 1301 DDVDTDPEDDRDSIIGGNGDDTITTGDDDDTIVSGAGNDVVDAGIDDDL 1349 D+ S+ + D + +D I+ +V+ G + + Sbjct: 870 ---------DKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGI 909 Score = 108 bits (272), Expect = 1e-25 Identities = 73/301 (24%), Positives = 106/301 (35%), Gaps = 32/301 (10%) Query: 1285 GDGNDVIDSSGGDNLTDDVDTDPEDDRDSIIGGNGDDTITTGDDDDTIVSGAGNDVVDAG 1344 D V D S + + R G+GDD + I +G G+DVV Sbjct: 585 QDKGAVYDYSNLIQHASVGNNQYREIRIESHLGDGDDKVFLSAGSANIYAGKGHDVVYYD 644 Query: 1345 IDDDLVTTGDGSDTVLGGQGNDTIDTSGSFLPLIDEADPFPDNDRDSVDAGAGDDVITTG 1404 D T DG+ G T G L + V G + Sbjct: 645 KTDTGYLTIDGTKATEAGNYTVTRVLGGDVKVLQEVVK------EQEVSVGKRTEKTQYR 698 Query: 1405 DDDDTVIGGAGDDTIDTGIDDDLVDAGDGNDSVIAGQGNDTVVAGAGDDTVDGGDGDDSI 1464 + T I G D + + D + D GDD ++G DG+D + Sbjct: 699 SYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRL 758 Query: 1465 IGGDGCDVVDAGAGNDFIDTSDPSPILDATDPNPLDDCDSVIGGAGNDTILTGDDADTIF 1524 G G D + G G+D + GG GND ++ + + Sbjct: 759 YGDKGNDTLSGGNGDDQLY-----------------------GGDGNDKLIGVAGNNYLN 795 Query: 1525 GGLGDD---LIDAGIDNDLVDGGAGNDTIDAGEGDDVVDGGAGDDSILGGLGADTLLGGD 1581 GG GDD + + +++ GG GND + EG D++DGG GDD + GG G D Sbjct: 796 GGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLS 855 Query: 1582 G 1582 G Sbjct: 856 G 856 Score = 86.6 bits (214), Expect = 7e-19 Identities = 83/297 (27%), Positives = 113/297 (38%), Gaps = 25/297 (8%) Query: 910 DDIVRAGDGADTVLAGDGDDDVQGGTGDDDLSGEAGDDSLFGEEGNDIIDGGDGDDTIDG 969 D D DGDD ++G G+D L G+ G+D+L G G+D + GGDG+D + G Sbjct: 728 ADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIG 787 Query: 970 GDGRDSVGGGDGNDVIDTSGSDPLIDEQVFPGLPVDS----------DPEDDRDNVSGGA 1019 G + + GGDG+D G+ L +F G D D + D + GG Sbjct: 788 VAGNNYLNGGDGDDEFQVQGNS-LAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGY 846 Query: 1020 GDDI--IRTGDDRDTIT--GGTGDDTIFAGID-DDEVFGNEGNDSIVDIQ-GADFIVGGD 1073 G+DI +G I GG D A ID D F EGND I+ G +G Sbjct: 847 GNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHK 906 Query: 1074 GDDTIEAGTNTFSDYIGDDPNLPVAGFPDILTDPNTTDGLDTVFGGAG-NDVISTGDDAD 1132 T N F GD N + D T D L N+ S D Sbjct: 907 NGITFR---NWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNKASYVYGND 963 Query: 1133 EIDGGTGNDTIDGGIDDDTITGGTGDDSIIGQHGADSIFGNDGDDFINAGGSTYGGN 1189 + G+ D + I G + + A S+ G NA +YG N Sbjct: 964 ALAYGSQGDLNPLINEISKIISAAGSFDVKEERTAASLLQLSG----NASDFSYGRN 1016 Score = 85.8 bits (212), Expect = 1e-18 Identities = 59/206 (28%), Positives = 77/206 (37%), Gaps = 38/206 (18%) Query: 1431 GDGNDSVIAGQGNDTVVAGAGDDTVDGGDGDDSIIGGDGCDVVDAGAGN----------- 1479 GDG+D V G+ + AG G D V D + DG +AG Sbjct: 617 GDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKV 676 Query: 1480 ----------------------DFIDTSDPSPILDATDPNPLDDCDSVIGGAGNDTILTG 1517 + T L TD L + +IG D Sbjct: 677 LQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDN--LYSVEELIGTTRADKFFGS 734 Query: 1518 DDADTIFGGLGDDLIDAGIDNDLVDGGAGNDTIDAGEGDDVVDGGAGDDSILGGLGADTL 1577 D G GDDLI+ ND + G GNDT+ G GDD + GG G+D ++G G + L Sbjct: 735 KFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYL 794 Query: 1578 LGGDGQDYFGAITGG---DVVDGGDG 1600 GGDG D F +V+ GG G Sbjct: 795 NGGDGDDEFQVQGNSLAKNVLFGGKG 820 Score = 84.2 bits (208), Expect = 3e-18 Identities = 71/310 (22%), Positives = 110/310 (35%), Gaps = 62/310 (20%) Query: 957 IIDGGDGDDTIDGGDGRDSVGGGDGNDVIDTSGSDPLIDEQVFPGLPVDSDPEDD----- 1011 GDGDD + G ++ G G+DV+ +D L +D + Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTD-------TGYLTIDGTKATEAGNYT 665 Query: 1012 -RDNVSGGAGDDIIRTGDDRDTITGGTGDDTIFAGIDDDEVFGNEGNDSIVDIQGADFIV 1070 + G +++ ++ G + + + ++ + ++ Sbjct: 666 VTRVLGGDV--KVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELI 723 Query: 1071 GGDGDDTIEAGTNTFSDYIGDDPNLPVAGFPDILTDPNTTDGLDTVFGGAGNDVISTGDD 1130 G D F DI + DG D + G GND + Sbjct: 724 GTTRADKFFGSK-----------------FTDIF---HGADGDDLIEGNDGNDRLY---- 759 Query: 1131 ADEIDGGTGNDTIDGGIDDDTITGGTGDDSIIGQHGADSIFGNDGDDFINAGGSTYGGNE 1190 G GNDT+ GG DD + GG G+D +IG G + + G DGDD G++ N Sbjct: 760 -----GDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKN- 813 Query: 1191 PDATDILPENDRDFADGGAGNDTIFGEDDDDTLIGGDGDDFLDGGIDED----SLTGGNG 1246 GG GND ++G + D L GG+GDD L GG D G+ Sbjct: 814 -------------VLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHH 860 Query: 1247 SDTGIGGQGD 1256 GG+ D Sbjct: 861 IIDDDGGKED 870 Score = 83.5 bits (206), Expect = 5e-18 Identities = 67/292 (22%), Positives = 106/292 (36%), Gaps = 33/292 (11%) Query: 1284 GGDGNDVIDSSGGDNLTDDVDTDPEDDRDSIIGGNGDDTITTGDDDDTIVSGAGNDVVDA 1343 G G+DV+ D +D + GN T G D + V Sbjct: 634 AGKGHDVVYYDKTDTGYLTIDGTKATEA-----GNYTVTRVLGGDVKVLQEVVKEQEVSV 688 Query: 1344 GIDDDLVTTGDGSDTVLGGQGNDTIDTSGSFLPLIDEADPFPDNDRDSVDAGAGDDVITT 1403 G + T + G+ D S LI D D+ Sbjct: 689 GKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIG------TTRADKFFGSKFTDIFHG 742 Query: 1404 GDDDDTVIGGAGDDTIDTGIDDDLVDAGDGNDSVIAGQGNDTVVAGAGDDTVDGGDGDDS 1463 D DD + G G+D + +D + G+G+D + G GND ++ AG++ ++GGDGDD Sbjct: 743 ADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDE 802 Query: 1464 IIGGDG---CDVVDAGAGNDFIDTSDPSPILDATDPNPLDDCDSVIGGAGNDTIL--TGD 1518 +V+ G GND + S+ + +LD + + D + GG GND +G Sbjct: 803 FQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGD-----DLLKGGYGNDIYRYLSGY 857 Query: 1519 DADTIF--GGLGD----------DLIDAGIDNDLVDGGAGNDTIDAGEGDDV 1558 I GG D D+ NDL+ + + G + + Sbjct: 858 GHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGI 909
>cloacin#Cloacin signature. Length = 551 Score = 29.3 bits (65), Expect = 0.007 Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 26 DAVTPASVDPEELAQLRAELEEEKLVSGQLEERNKKLREKYDAAREALEAELETQRMATA 85 DA P + RAEL + + +ER K + Y++ + L+A +T A A Sbjct: 311 DATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIA 370 Query: 86 KLD 88 ++ Sbjct: 371 EIK 373
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 184 bits (468), Expect = 1e-62 Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 5/159 (3%) Query: 3 IGLYPGTFDPVTLGHLDIIKRGAALVDRLVIGVAINRDKGPLFSLEERVEMIEAECAELS 62 +YPG+FDP+T GHLDII+RG L D++ + V N +K P+FS++ER+E I A L Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 63 RKTGTEIVVHPFENLLIDCAKDVGAQIIVRGLRAVADFEYEYQMVGMNRSLDDSVETVFL 122 V FE L ++ A+ A I+RGLR ++DFE E QM N++L +ETVFL Sbjct: 62 -----NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFL 116 Query: 123 MAEARHQAIASKLVKEIARLDGDISKFVPPLVRERVLSR 161 + ++S LVKE+AR G++ FVP V + + Sbjct: 117 TTSTEYSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQ 155
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 136 bits (343), Expect = 2e-41 Identities = 84/251 (33%), Positives = 123/251 (49%), Gaps = 13/251 (5%) Query: 4 LTGKCALVTGASGGIGGAIATALHGAGATVALSGTREEPLKALAAEL---GDRAHVLPCN 60 + GK A +TGA+ GIG A+A L GA +A E L+ + + L A P + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 LSDAEAVDALPKQAIEAMGALDILVNNAGITRDQLFMRMSDDEWQSVLDVNLTSTMRLCR 120 + D+ A+D + + MG +DILVN AG+ R L +SD+EW++ VN T R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 121 GVMRPMMKARWGRIINISSIVGATGNPGQANYAASKAGMVGMTKSIAYEVASRGITANAI 180 V + MM R G I+ + S A YA+SKA V TK + E+A I N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 181 APGFIATAMTDKLTDEQK----------EKINVQIPAARMGQPEEIAAAVLYLASPEAAY 230 +PG T M L ++ E IP ++ +P +IA AVL+L S +A + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 231 VTGATLHVNGG 241 +T L V+GG Sbjct: 246 ITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 77.9 bits (192), Expect = 6e-18 Identities = 81/368 (22%), Positives = 146/368 (39%), Gaps = 26/368 (7%) Query: 12 LITLILLTAISVLSLNMFLPALAQMASSFEVSYAVIS---VAVGGYMVVSSALQLIIGPL 68 LI ++ A+ + + + +P L + S V + + + Y ++ A ++G L Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 69 SDMYGRRPVILAGMAIFTVASVGCYFASNVWLFLALRMLQGAVISGMVLSRAVVRDIAPP 128 SD +GRRPV+L +A V A +W+ R++ G + ++ A + DI Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDG 126 Query: 129 QEAARLLGMIGTAMALAPLMGPVLGGFLGETFGWRANFIAYAIMGALMFALSWHDLAETN 188 E AR G + + GPVLGG +G F A F A A + L F L E++ Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPESH 185 Query: 189 LTPSDSFTAQFRS------YPELFKSKVFWAYCLCLIGSVGGFYAFLGGAALVGEGLFGL 242 + + + ++ VG A L + GE F Sbjct: 186 KGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL--WVIFGEDRFHW 243 Query: 243 TPSQLGIGIGSISA-GFMLGNFLTGRLSGRIPMLRLMLWGRLSATFGPLVIICIMALGAM 301 + +GI + + + +TG ++ R+ R ++ G ++ G I+ A Sbjct: 244 DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTG-----YILLAFAT 298 Query: 302 NFWVMFAGAIFVGLGNGLTLPAANAGVMSVNP------RLAGSASGLSGAITILGGAGAT 355 W+ F + + G G+ +PA ++S +L GS + L+ +I+G T Sbjct: 299 RGWMAFPIMVLLASG-GIGMPALQ-AMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFT 356 Query: 356 ALTGALAG 363 A+ A Sbjct: 357 AIYAASIT 364
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 28.0 bits (62), Expect = 0.029 Identities = 10/35 (28%), Positives = 19/35 (54%) Query: 1 MEIGTGLLVLALVLAALLVWRLWPSRRRLSPLGQE 35 M+ LLV+AL+ + ++W+ W + P Q+ Sbjct: 1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQ 35
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 29.3 bits (65), Expect = 0.038 Identities = 17/65 (26%), Positives = 34/65 (52%) Query: 407 SHFTKLNSDYVAKHGFPFIIAVRDHDKASILAAFDQRINNTRAIEFEEACRQVERIAHFR 466 SH ++ SD++A +G+ + V D + S+L D + +EF + R++ ++ R Sbjct: 198 SHEVEIYSDWIASYGYQRRLVVLDFIEGSLLTDIDANDASCSRLEFGQLLRRLTQLKMLR 257 Query: 467 LKDIL 471 D+L Sbjct: 258 SADLL 262
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.7 bits (79), Expect = 2e-04 Identities = 12/23 (52%), Positives = 17/23 (73%) Query: 30 ALVIRGPNGIGKTTLLRTLAGLQ 52 ++V+ G GIGK+TL+ TL GL Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 348 bits (894), Expect = e-122 Identities = 179/317 (56%), Positives = 238/317 (75%), Gaps = 6/317 (1%) Query: 2 RLRLVPQDTNWDFFARYKLWLGISAFMMVVAFASFVLQGLNYGIDFRGGTTIRTDSSMPI 61 RL+LVP+ TN+DFF G + MM+ + ++ GLN+GIDF+GGTTIRT+S+ I Sbjct: 4 RLKLVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAI 63 Query: 62 VIADYRDSIEPLGLGDITITEVFDPSFGEDKNVAMIRIQAQDGEE------AVTSEVIEA 115 + YR ++EPL LGD+ I+EV DPSF ED++VAMIRIQ Q+ + A E++ Sbjct: 64 DVGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNK 123 Query: 116 VLIALQEKAPDITFSSVESVGPKVSGELIQTAMIAVVLAIGAVLIYIWLRFEWQFAVGAV 175 V AL P + +S ESVGPKVSGEL+ TA+ +++ A ++ YIW+RFEWQFA+GAV Sbjct: 124 VETALTAVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAV 183 Query: 176 VALVHDVLLTIGVFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKQKPLK 235 VALVHDVLLT+G+F+ LQ++FDL +AALLTI GYS+NDTVVVFDR+RENL KYK PL+ Sbjct: 184 VALVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLR 243 Query: 236 EVMNISINETLSRTMMTSVTTLLALLALFFLGGDVIRGFVFAMIWGVIVGTYSSVFVAST 295 +VMN+S+NETLSRT+MT +TTLLAL+ + GGDVIRGFVFAM+WGV GTYSSV+VA Sbjct: 244 DVMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKN 303 Query: 296 ILLWLGVKRDWTKPNAT 312 I+L++G+ R+ K + + Sbjct: 304 IVLFIGLDRNKEKKDPS 320
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 99.5 bits (248), Expect = 4e-25 Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 4/185 (2%) Query: 370 AGLEFLEERTIGPELGADSIEAGKLACVVAFVGVLVFMVLSYG-TFGVFANIALVINVVL 428 L+ ++GP++ + + + + A V ++ ++ + + F + A +ALV +V+L Sbjct: 133 PALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLL 192 Query: 429 IFGLLSMLGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKSAKG--PARAIDLGYEK 486 GL ++L L +A ++ G +++ V+VF+R+RE L K ++L + Sbjct: 193 TVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNE 252 Query: 487 ALSAIVDANITTFITAVILYAVGSGPVRGFAITLGLGILTSVFTAIFV-TRLIVVIWFER 545 LS V +TT + V + G +RGF + G+ T +++++V +++ I +R Sbjct: 253 TLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIGLDR 312 Query: 546 RKPKT 550 K K Sbjct: 313 NKEKK 317
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 36.8 bits (85), Expect = 2e-04 Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 32/189 (16%) Query: 5 LAIVGRPNVGKSTLFNRL-----VGKRLALVDDQPGVTR-DLREGEAKLG---------- 48 + ++ + GK+TL L L VD G TR D E + G Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDK--GTTRTDNTLLERQRGITIQTGITSF 63 Query: 49 ---DLRFTVIDTAGLEDATDDSLQGRMRRLTERAVEMADACLFMIDARAGVTPTDEVFAD 105 + + +IDT G D + R++ + D + +I A+ GV + Sbjct: 64 QWENTKVNIIDTPGHMDFLAE---------VYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 106 ILRRKGSPVFVAANKAEGMAAD-AGVMEAYGLGLGDPIRLSAEHGEGLNELYTALMPLAD 164 LR+ G P NK + D + V + L I + + N T ++ Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTN-FTESE 173 Query: 165 QYEERAKED 173 Q++ + + Sbjct: 174 QWDTVIEGN 182 Score = 31.0 bits (70), Expect = 0.011 Identities = 37/142 (26%), Positives = 53/142 (37%), Gaps = 30/142 (21%) Query: 196 KPLQIAVVGRPNAGKSTLINKIL---------GE--------DRLLTGPEAGITRDAISL 238 K + I V+ +AGK+TL +L G D L + GIT Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 239 TLDWSGTPVRIFDTAG-MRKKAKVQDKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQD 297 + W T V I DT G M A+V LSV DG ++L+ A + Q Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVY---RSLSVLDG---------AILLISAKDGVQAQT 109 Query: 298 LRIADLAEREGRAVVVAVNKWD 319 + + G + +NK D Sbjct: 110 RILFHALRKMGIPTIFFINKID 131
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.5 bits (100), Expect = 2e-06 Identities = 34/268 (12%), Positives = 74/268 (27%), Gaps = 45/268 (16%) Query: 123 LAEAEARLAEARARIPETEAQIPRAQAQLEQAKAQLEEALINDNAARKLSKGGFASDSRV 182 + + + + + + A+ A++ + + + L + V Sbjct: 195 FSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAV 254 Query: 183 AATAAAVRGAEAAVKSAEAALKTSQSGMLGVQAAI-------------ESAQAGVDASKK 229 A ++ ++ L+ +S +L + + Q + Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 230 EI---------SRLEIRAPFQGL-LESDTAELGSLIQPGGACATVIQLD---------PI 270 + IRAP + G ++ ++ D Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQN 374 Query: 271 KLVGFVPEAQVDRVKVGALAGGRLTTGQNVTGAVSFLGRSADQLTRT---FRVEIEVP-- 325 K +GF+ Q +KV A T + G V + A + R F V I + Sbjct: 375 KDIGFINVGQNAIIKVEAFPY---TRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEEN 431 Query: 326 -----NPDLAIRDGQTAEIIIGAEGRTA 348 N ++ + G I R+ Sbjct: 432 CLSTGNKNIPLSSGMAVTAEIKTGMRSV 459 Score = 40.6 bits (95), Expect = 9e-06 Identities = 24/171 (14%), Positives = 54/171 (31%), Gaps = 10/171 (5%) Query: 67 EIDSAVILRGQ-TEAARQVDVRSETSGLVVSPPLRKGAFVNEGQILCQLDTGTRGSILAE 125 +++ G+ T + R +++ + +V +++G V +G +L +L Sbjct: 79 QVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALG------- 131 Query: 126 AEARLAEARARIPETEAQIPRAQAQLEQA-KAQLEEALINDNAARKLSKGGFASDSRVAA 184 AEA + ++ + + + R Q +L E + D + Sbjct: 132 AEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLI 191 Query: 185 TAAAVRGAEAAVKSAEAALKTSQSGMLGVQAAIESAQAGVDASKKEISRLE 235 + E L ++ L V A I + K + Sbjct: 192 -KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFS 241
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 383 bits (986), Expect = e-117 Identities = 222/1161 (19%), Positives = 421/1161 (36%), Gaps = 178/1161 (15%) Query: 18 FIVLSLLVGGFAYANLPKEGEPDIQIPGLFISVPFPGISASDSETLLVKVMETELADLDG 77 ++ ++ G A LP P I P + +S +PG A + + +V+E + +D Sbjct: 15 LAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNMNGIDN 74 Query: 78 LESMSATAAENYAG-IFIEFEFGWDKSAVMADVREAMNAAEAAFPDGAEKYSINEINFSE 136 L MS+T+ + I + F+ G D V+ + A P ++ I+ S Sbjct: 75 LMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSS 134 Query: 137 FPVLIINLTGDVPERTMSR----VAESLKDKIESLDAVLEAGIAGKRDEMLEVLIDPLRL 192 +++ D P T VA ++KD + L+ V + + G + M + +D L Sbjct: 135 SYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQYAM-RIWLDADLL 193 Query: 193 EAYNVTAGELISVVRNNNQLIAAGEVESSTGA------FSVKIPSSFNEPQDVYNLPVKV 246 Y +T ++I+ ++ N IAAG++ + S+ + F P++ + ++V Sbjct: 194 NKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRV 253 Query: 247 NGD-RIVTLGDLAEIRLTFEDRLGTARFNGETTVALQVVKRKGFNLLDMADDVKVVVARA 305 N D +V L D+A + L E+ AR NG+ L + G N LD A +K +A Sbjct: 254 NSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAEL 313 Query: 306 SAEWPAELQSAVYVGTSNDQSRVVGSMISQLEGSVLTAIALVMIVILAALG-VRPALLVG 364 +P + V D + V I ++ ++ AI LV +V+ L +R L+ Sbjct: 314 QPFFPQ----GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPT 369 Query: 365 FAIPTSFLLCFAFLALMGVTISNIVMFGLILAVGMLVDGAIVVVE-YADKRISEGTGPMH 423 A+P L FA LA G +I+ + MFG++LA+G+LVD AIVVVE + + P Sbjct: 370 IAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKE 429 Query: 424 AYVEAAKRMFWPVVSSTATTLCAFLPMLFWPGVPGQFMGMLPVTLIFVLSASLVVALIYL 483 A ++ ++ +V L I + Sbjct: 430 ATEKSMSQIQGALVGIAMV---------------------------------LSAVFIPM 456 Query: 484 PVMGGVSGRMSRLFGRS-ADALRAATPWWLRAALVLPSLYMVFLGAMQTLNPGYLFGGTP 542 GG +G + R F + A+ + L A ++ P+L L P Sbjct: 457 AFFGGSTGAIYRQFSITIVSAMALSV---LVALILTPALCATLLK--------------P 499 Query: 543 IFEGVMSLLPGMVLFLLGSFASSITLGAAQIAWKKTSVQAGRRRTYFGQFIQLITGNPIM 602 + G + +F S+ + + R Sbjct: 500 VSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGK----ILGSTGRYLL------------- 542 Query: 603 PVVSAAAVLFFVMSVFGYYGSNNNGTEFFVESEPEMAIVYVRARGNLSLEQKDDLIKRAE 662 L V + + F E + + + ++ + E+ ++ + Sbjct: 543 -----IYALIVAGMVVLF---LRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 663 DIVLAHPGIDNAFSFAGDSGLNTNTGGAQPPNDTIGQIQFETIPWEDRRDRPDLDGDLVL 722 D L + N S +G + + Q N + + + PWE+R + + + V+ Sbjct: 595 DYYLKNE-KANVESVFTVNGFSFSG---QAQNAGMAFVSLK--PWEER-NGDENSAEAVI 647 Query: 723 QELTEQLSALPGTKIEILA--ASRGPASAKPVHLRLK---ADDWEDLISAAQTARAKFDE 777 +L + + A +A L + L A + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 778 TEG------LTLQEDTLPLPGIDWQLDVDVQEAGRYGADVQTVGGMIQLVTRGILLDTMR 831 EDT +L+VD ++A G + + I G ++ Sbjct: 708 HPASLVSVRPNGLEDTAQF-----KLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFI 762 Query: 832 VDSSDEEIEIRVRLPEKDR-VLSTLDTLKLRTADG-LIPLSNFLTRKPVAKLAEINRADQ 889 ++ V+ K R + +D L +R+A+G ++P S F T V + R + Sbjct: 763 DR--GRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNG 820 Query: 890 MRFFDVKAGVVNATMLLTNAETNETRLISAADWNEDAALQAQSEREGFEAVPLTPANRIE 949 + +++ A + A+ +E Sbjct: 821 LPSMEIQGEA-------------------APGTSSGDAMAL-----------------ME 844 Query: 950 AITSWLQTAPFPEGVAWEWTGDQEDEAESQAFLSSAFMGALGLMFIILLAQFNSFYNSIL 1009 + S L P G+ ++WTG E S + + ++F+ L A + S+ + Sbjct: 845 NLASKL-----PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 1010 VLLAVVLSTAGVLIGMLVMDQTFSIIMTGTGIVALAGIVVNNNIVLIDTYQEY--SSYMP 1067 V+L V L GVL+ + +Q + G++ G+ N I++++ ++ Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVY-FMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 1068 RQEAIVRTAEDRIRPVLLTTITTMAGLAPMMFGLSLDFINGGYSIDSPTALWWKQLATAV 1127 EA + R+RP+L+T++ + G+ P+ G + + V Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG-----AGSGAQNA-------VGIGV 1006 Query: 1128 VFGLGIATVLTLVFTPSMLAL 1148 + G+ AT+L + F P + Sbjct: 1007 MGGMVSATLLAIFFVPVFFVV 1027 Score = 103 bits (258), Expect = 2e-24 Identities = 82/519 (15%), Positives = 180/519 (34%), Gaps = 55/519 (10%) Query: 2 TGLVDWAAARARMIMAFIVLSLLVGGFAYANLPKEGEPDIQIPGLFISVPFP-GISASDS 60 T V + L + + LP P+ + P G + + Sbjct: 527 TNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERT 586 Query: 61 ETLLVKVMETELADL-DGLESMSATAAENYAG-------IFIEF----EFGWDKSAVMAD 108 + +L +V + L + +ES+ +++G F+ E D+++ A Sbjct: 587 QKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 109 VREAMNAAEAAFPDGAEKYSINE------INFSEFPVLIINLTGDVPERTMSRVAESLKD 162 + A E N + F +I+ G + +++ L Sbjct: 647 IHRAKM--ELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHD-ALTQARNQLLG 703 Query: 163 KIESLDAVLEAGIAGKRDEMLEVLIDPLR--LEAYNVTAGELISVVRNN------NQLIA 214 A L + ++ + ++ + +A V+ ++ + N I Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 215 AGEVESSTGAFSVKIPSSF-NEPQDVYNLPVKVNGDRIVTLGDLAEIRLTFEDRLGTA-- 271 G V+ V+ + F P+DV L V+ +V + G+ Sbjct: 764 RGRVKK----LYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVY----GSPRL 815 Query: 272 -RFNGETTVALQVVKRKGFNLLDMADDVKVVVARASAEWPAELQSAVYVGTSNDQSRVVG 330 R+NG ++ +Q G + D ++ +++ PA + + G S + Sbjct: 816 ERYNGLPSMEIQGEAAPGTSS----GDAMALMENLASKLPAGI-GYDWTGMSYQERLSGN 870 Query: 331 SMISQLEGSVLTAIALVMIVILAAL--GVRPALLVGFAIPTSFLLCFAFLALMGVTISNI 388 +++ +V+ + LAAL + V +P + L Sbjct: 871 QA-----PALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVY 925 Query: 389 VMFGLILAVGMLVDGAIVVVEYA-DKRISEGTGPMHAYVEAAKRMFWPVVSSTATTLCAF 447 M GL+ +G+ AI++VE+A D EG G + A + A + P++ ++ + Sbjct: 926 FMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGV 985 Query: 448 LPMLFWPGVPGQFMGMLPVTLIFVLSASLVVALIYLPVM 486 LP+ G + + ++ + ++ ++A+ ++PV Sbjct: 986 LPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 28.7 bits (63), Expect = 0.003 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Query: 43 TERAVSEEKRKFMVARFNQIDGRLDKIDGHIAR 75 T++A+ E ++ +F Q+D RLDK+D + + Sbjct: 353 TKKAIRESN-QYTDHKFRQLDNRLDKLDTRVDK 384
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.6 bits (64), Expect = 0.032 Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 8/96 (8%) Query: 147 RAKNRPVIIITSNNEKELPDAFLRRCFFHYIRFP-DMDTMRQIV--AVHHPAIKEQLLTT 203 + PV+++++ N + + Y+ P D+ + I+ A+ P + L Sbjct: 72 ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLED 131 Query: 204 ALTQFYEIREQSGLKKKPSTSEVLDWLKLLLAEDLS 239 + +S + E+ L L+ DL+ Sbjct: 132 DSQDGMPLVGRS-----AAMQEIYRVLARLMQTDLT 162
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 28.8 bits (64), Expect = 0.009 Identities = 9/37 (24%), Positives = 19/37 (51%) Query: 77 GNIGPALDGVADRWNEAELRGIVSNAKLTYDGTMMPS 113 N+ A+D + ++W++ G A+ Y +M+ S Sbjct: 226 ANVSTAIDNLVNQWHDNYSGGNTLPARTQYTESMVYS 262
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 35.8 bits (82), Expect = 5e-04 Identities = 49/277 (17%), Positives = 91/277 (32%), Gaps = 43/277 (15%) Query: 165 ARAKAASELMAARKA----------------------------------IEALREEEEYL 190 ARAKAA+E A KA A++ E+E L Sbjct: 71 ARAKAAAEAQAKAKANRDALTQRLKDIVNEALRHNASRTPSATELAHANNAAMQAEDERL 130 Query: 191 RYSVAELDKLSPKAGEDEALDRQRRQMQGAEKVRSDIVRALSVLRDEKGAEDSASEALRW 250 R + AE ++A ++ + E+ +++ R L + E+ + SE + Sbjct: 131 RLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKA 190 Query: 251 LEAVGGEAAEL------LVEAIEALERGLNELALASDAVEDTLRAMEFSPAELEACEERL 304 +E + + + I+ L L+ A DA TL A+ A + L Sbjct: 191 VEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKEL 250 Query: 305 FAIRGLARKYEVQPDALAEHAETLRTKLEQVDASDA---ELGALEAASKAADAAYRAAAE 361 + P E R ++ + ++ A E +A + Sbjct: 251 DELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQIQK 310 Query: 362 ALSAARHTAAAKLDAAVMAELAPLKMERAVFTTELTD 398 A+S + A + AE K + + +++ D Sbjct: 311 AISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIKD 347
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.3 bits (91), Expect = 4e-05 Identities = 37/227 (16%), Positives = 70/227 (30%), Gaps = 29/227 (12%) Query: 309 KMRVSVVATGIDASEVRNELPVP--RRSLAEPLRQKVAAEEAPVEPQEAAVAFTAAEPAV 366 + VS+V +D + +L R L P + + A P+V Sbjct: 952 HLNVSLVGNTVDLGAWKYKLRNVNGRYDLYNP-EVEKRNQTVDTTNITTPNNIQADVPSV 1010 Query: 367 AAAPVERSLFEELPDAENAAAEEQMEDIFTPRRDAYEAPAASMVEDDLPPPAYQPQAAQR 426 + E + +E P A A E+ E D A + A R Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQD----ATETTAQNR 1066 Query: 427 QETIDAAPEEFVAPRAPAPGTPSPEALARLRQAVHNNRPTQEADVPQAEEKPRFGINSLI 486 + +A +A+ + T+ + E++ + + Sbjct: 1067 EVAKEAKSN--------VKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV---- 1114 Query: 487 NRMTGHEQAQKPAAPQAAAPQQAPRPAAAARVQPQVSSAQPQQQPDA 533 E + P+ + Q +P+ + VQPQ A+P ++ D Sbjct: 1115 ------ETEKTQEVPKVTS-QVSPKQEQSETVQPQ---AEPARENDP 1151 Score = 36.2 bits (83), Expect = 3e-04 Identities = 43/224 (19%), Positives = 67/224 (29%), Gaps = 36/224 (16%) Query: 323 EVRNELPVPRRSLAEPLRQKVAAEEAPVEPQEAAVAFTAAEPAVA-AAPVERS-LFEELP 380 E RN+ V ++ P + P +E A A P A A P E + E Sbjct: 986 EKRNQ-TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 381 DAENAAAEEQMEDIFTPRRDAYEA--PAASMVEDDLPPPAYQPQAAQRQETIDAAPEEFV 438 E+ E+ +D E A S V+ + A ET + E Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN---TQTNEVAQSGSETKETQTTE-- 1099 Query: 439 APRAPAPGTPSPEALARLRQAVHNNRPTQEADVPQAEEKPRFGINSLINRMTGHEQAQKP 498 T + + +A TQE ++ P+ Q Q Sbjct: 1100 --------TKETATVEKEEKAKVETEKTQEVPKVTSQVSPK--------------QEQSE 1137 Query: 499 AAPQAAAPQQAPRPAAAARVQPQVSSAQPQQQPDADQERIEIPA 542 A P + P + +PQ +Q D +Q E + Sbjct: 1138 TVQPQAEPARENDPTVNIK-EPQ---SQTNTTADTEQPAKETSS 1177 Score = 34.3 bits (78), Expect = 0.002 Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 31/158 (19%) Query: 418 AYQPQAAQRQETIDAAPEEFVAPRAPAPGTPSP------------------------EAL 453 A P E I A +E P PAP TPS E Sbjct: 1005 ADVPSVPSNNEEI-ARVDEAPVPP-PAPATPSETTETVAENSKQESKTVEKNEQDATETT 1062 Query: 454 ARLRQAVHNNRPTQEADVPQAEEKPRFGINSLINRMTGHEQAQKPAAPQAAAPQQAPRPA 513 A+ R+ + +A+ Q E + G + + T ++ + A + + Sbjct: 1063 AQNREVAKEAKSNVKAN-TQTNEVAQSGSETKETQTTETKETATVEK-EEKAKVETEKTQ 1120 Query: 514 AAARVQPQVSSAQPQQ---QPDADQERIEIPAFLRRQA 548 +V QVS Q Q QP A+ R P ++ Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 55.5 bits (134), Expect = 1e-10 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 14/166 (8%) Query: 228 EQELGAACIDMGGGTTGVSIFMKKHMIYADAVRLGGDHVTGDI------SMGLQVPMSTA 281 + G+ +D+GGGTT V++ ++Y+ +VR+GGD I + G + +TA Sbjct: 156 SEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATA 215 Query: 282 ERIKTFYGGVVATGMDDREMIDMGGD--TGDWEHDRRSVSRTELIGIMRPRVEEILEEVR 339 ERIK G G + RE+ G + G ++ E++ ++ + I+ V Sbjct: 216 ERIKHEIGSAY-PGDEVREIEVRGRNLAEGVPRGFT--LNSNEILEALQEPLTGIVSAVM 272 Query: 340 AKLDAAGFDH---LPSQQIVLTGGASQIPGLDGLASRILGQQVRLG 382 L+ + + + +VLTGG + + LD L G V + Sbjct: 273 VALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVA 318
>PF07675#Cleaved Adhesin Length = 1358 Score = 30.8 bits (69), Expect = 0.001 Identities = 25/85 (29%), Positives = 30/85 (35%), Gaps = 17/85 (20%) Query: 12 LALWVRPAAAQD----SAHQAVIASQIEAFQADDFVRAFSYASPTIQNVFRTPENFGAMV 67 L WV AQD S H AV AS A +F A T + V PE Sbjct: 708 LTFWV---CAQDANYASEHYAVYASST-GNDASNFADALLEEVLTAKTVVTAPEAIRGTR 763 Query: 68 KQGYPMVWR------PSDVRYLEAR 86 QG W P+ +Y+ R Sbjct: 764 VQG---TWYQKTVQLPAGTKYVAFR 785
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 37.9 bits (88), Expect = 9e-06 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 11/70 (15%) Query: 33 GSFDPAHKGHVHITREALKRFGLDEVWWLVSPGNPLKAEGPAPM---AERMARARDVMQH 89 GSFDP GH+ I + F D+V+ V NP K PM ER+ + + H Sbjct: 7 GSFDPITFGHLDIIERGCRLF--DQVYVAVL-RNPNK----QPMFSVQERLEQIAKAIAH 59 Query: 90 -PRVKISDFE 98 P ++ FE Sbjct: 60 LPNAQVDSFE 69
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.013 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 4/57 (7%) Query: 328 AMGDKLLVEGLSFALPPG----GIVGVIGPNGAGKSTLFKMLTGQEQPDEGSVTYGD 380 +G +L+ ++ + PG V + G G GKSTL L G + + G Sbjct: 575 LVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGT 631
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.7 bits (165), Expect = 3e-16 Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 10/195 (5%) Query: 1 MARTQGSHSDITGPRIRAAARVLFARHGYAAVSMRQIASEVGLQAGALYNYTADKQSLLA 60 MAR + T I A LF++ G ++ S+ +IA G+ GA+Y + DK L + Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 ELMREHMDDLLEARADV-NSPAKAPLEALAEFVRFHIGFHIERP-DEVFIAYMELRALAP 118 E+ ++ E + PL L E + + + + + + + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 119 ENFAEIEGLRRQYENE----LEGILRRGAEAGVFVFEDAKITTLAVI---AMLTGVNTWY 171 A ++ +R E +E L+ EA + D A+I + + W Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLP-ADLMTRRAAIIMRGYISGLMENWL 179 Query: 172 RQGGRLSLEEVEDIY 186 L++ Y Sbjct: 180 FAPQSFDLKKEARDY 194
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 73.9 bits (181), Expect = 4e-18 Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 25/190 (13%) Query: 4 ILITGANRGIGARLAELYAVTGDTVTAT-----------------ARSGDGYAALDVTNP 46 ITGA +GIG +A A G + A AR + + DV + Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP-ADVRDS 69 Query: 47 ASVKALASAMAEET--VDLLICNAGIYPDKGQALEDGYPSDMWAQSFATNVTGVFLTVQA 104 A++ + + + E +D+L+ AG+ L + W +F+ N TGVF ++ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLR---PGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 105 FLPHLMRSDAPKIAIISSQMGSDTKAPGGSYIYRSSKAAALNLARNLAADLAPEGVAVGA 164 ++M + I + S + +Y SSKAAA+ + L +LA + Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAY--ASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 165 YHPGWVRTDM 174 PG TDM Sbjct: 185 VSPGSTETDM 194
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 484 bits (1248), Expect = e-166 Identities = 178/566 (31%), Positives = 296/566 (52%), Gaps = 5/566 (0%) Query: 186 VRGATGQEGAAEGHVWLH-EPRVVVTNPIAEDPHREFERLSEAVEELRVGVDKMLAGARG 244 + G G A ++H EP V + D E E+L+ A+E+ + + + Sbjct: 5 ITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEA 64 Query: 245 G-GKEQLDVLEAYRMFANSKGWMSRMEQDI-GRGLSAEAAVEKEQSTARARMQQVTDAYL 302 G ++ ++ A+ + + + ++ I ++AE A+++ + + + + Y+ Sbjct: 65 SMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEYM 124 Query: 303 RERLHDLDDLSNRLLRILTGQGLETGAEMPPDPVLIARNIGPAELLDYGRS-LKAIVLEE 361 +ER D+ D+S R+L L G + A + + V+IA ++ P++ + +K + Sbjct: 125 KERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDI 184 Query: 362 GSVGSHAAIVARALAIPLIIHASRITTEALNGDHIMVDGDQGVAHLRPDDTVVAAFRDKI 421 G SH+AI++R+L IP ++ +T + +GD ++VDG +G+ + P + V A+ +K Sbjct: 185 GGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKR 244 Query: 422 AMQAQAQERYTSIREKPATSLDGQTIALTMNAGLMADLPSLDSSGAEGVGLFRTELQFLV 481 A + ++ + + +P+T+ DG + L N G D+ + ++G EG+GL+RTE ++ Sbjct: 245 AAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMD 304 Query: 482 RNQMPRRSELSALYARVLDAAQGKRVVFRTLDIGSDKVLPYMKPNDEPNPALGWRAIRVG 541 R+Q+P E Y V+ GK VV RTLDIG DK L Y++ E NP LG+RAIR+ Sbjct: 305 RDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAIRLC 364 Query: 542 LDKPGIMRMQLQALLRAANGRPLTVMFPFVAQFEEYRAARVEMDKALARERALGHALPSS 601 L+K I R QL+ALLRA+ L VMFP +A EE R A+ M + + + G + S Sbjct: 365 LEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDS 424 Query: 602 LEIGAMLETPSLAFAPDKFFDEVDFLSIGGNDLKQFFFAADRENERVRRRYDTLNVSFLT 661 +E+G M+E PS A A + F EVDF SIG NDL Q+ AADR NERV Y + + L Sbjct: 425 IEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAILR 484 Query: 662 FLEGIVKRCDASGTALSFCGEDAGRPVEAVCLAAIGLRSLSMRPASIGPVKSLLRRVDLE 721 ++ ++K + G + CGE AG V L +GL SM SI P +S L ++ E Sbjct: 485 LVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKE 544 Query: 722 AVKALIEAA-AQEGQQSVRPAVVEYL 746 +K + A + + V V + Sbjct: 545 ELKPFAQKALMLDTAEEVEQLVKKTY 570
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 27.6 bits (61), Expect = 0.050 Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 4/115 (3%) Query: 112 TVAGEPSWMTRALTTAMGAAGGFGGLPSALAELPVTTTVLLRAIQTIAEEHGFDTREAAV 171 T E + T GF A V+ L ++ R AA Sbjct: 103 TRPDEKQYDTVETQLRFMTENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAALTDRPAAP 162 Query: 172 KYDCITVFAVAGPLEDDDGADLAFLSTRLLVNGTAVSGLIARIAPRLSVVLGQKL 226 + + A + D D + AF L + + G ++ L +V G KL Sbjct: 163 DENLPPLLREALQIMDSDDGEQAF----LHGLESLIRGFEVQLTALLQIVGGDKL 213
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 116 bits (292), Expect = 8e-34 Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 22/252 (8%) Query: 3 RTALVTGGSRGIGAAIAKRLKDDGYNVAA--------TYAGNDDAAAAFTAETGIKTYKW 54 + A +TG ++GIG A+A+ L G ++AA + A A AE + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA----FPA 64 Query: 55 NVADYDESAAGLAKVEAEVGPIDVVVANAGITRDAPFHKMTPQQWHEVIDTNLTGVFNTV 114 +V D A++E E+GPID++V AG+ R H ++ ++W N TGVFN Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 115 HPIWNGMRDRKFGRVIVISSINGQKGQFAQVNYAATKAGDLGIVKSLAQEGARAGITANA 174 + M DR+ G ++ + S + + YA++KA + K L E A I N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 175 ICPGYIATEM--VMAVPEKVRESIIG--------QIPAGRLGEPEEIARCVAFLASDDAG 224 + PG T+M + E E +I IP +L +P +IA V FL S AG Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 225 FINGSTISANGG 236 I + +GG Sbjct: 245 HITMHNLCVDGG 256
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 32.5 bits (74), Expect = 2e-04 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 10/88 (11%) Query: 43 DEIAKLRFVRRCRDLG-FPISNIQTFLSLTPQYDRSCGEVRTMAENHLGEINAKIENLMR 101 D IA+ R +G P++ ++ + G + +E +N + Sbjct: 62 DTIAE-----RLLAIGGQPVATVKEYTEHASI--TDGGNETSASEMVQALVNDYKQISSE 114 Query: 102 LREALLSLSKNCDDGTADCPMLDALMKD 129 + + +N D+ TAD + L+++ Sbjct: 115 SKFVIGLAEENQDNATAD--LFVGLIEE 140
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 412 bits (1060), Expect = e-129 Identities = 201/1054 (19%), Positives = 421/1054 (39%), Gaps = 69/1054 (6%) Query: 3 VARFSIVNPIYTWIVILMCLLGGIWGFSSLGRLEDPAFTIKVAIVVTQYPGASAEEVATE 62 +A F I PI+ W++ ++ ++ G L + P V YPGA A+ V Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VSEPIESAIQKMGEVKLIE-TMNQPALSWITVEMEDHYDGSELPSIWTKLRNRVSEA--A 119 V++ IE + + + + T + IT+ + G++ +++N++ A Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQS---GTDPDIAQVQVQNKLQLATPL 117 Query: 120 LPSGATAPYV-NDSFGDVYGLYYAI--TAPGFSDREINNLADF-LRREVLSVEGVADAVI 175 LP + + Y + PG + +I++ ++ + + GV D + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 176 SGAPNE-RIYVEPDLALSTSLGIPPAMMQAALANADEIVEGGSI---QDAEGRTL---IQ 228 GA RI+++ DL + P + L ++ + G + G+ L I Sbjct: 178 FGAQYAMRIWLDADLLNK--YKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235 Query: 229 RPDGSDSVSAIAALSVGVG--GQIVNLSDFADVYRGREDNPDLILRHNGVEAFSLGVAGL 286 + +++ V G +V L D A V G E N ++I R NG A LG+ Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGE-NYNVIARINGKPAAGLGIKLA 294 Query: 287 STENIVEVGHAVDARLELLKQSIPVGITIEPIYQQHVVVEEASNSFLVNLAMSVAIVIIV 346 + N ++ A+ A+L L+ P G+ + Y V+ + + + L ++ +V +V Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 347 LAVFMG-WRAAVVVGVTLLLTVVGTLFFMALGSIEMERISLGALIIAMGMLVDNAIVVAE 405 + +F+ RA ++ + + + ++GT +A + +++ +++A+G+LVD+AIVV E Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 406 GMQINMQRGQTS-REASTEAASKTQIPLLGATVIGIMAFAGIGLSPDATGEFLFSLFAVI 464 ++ M + +EA+ ++ S+ Q L+G ++ F + +TG I Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 465 AISLMSSWVLAITVTPLLGHYFFRQGEKGASGGYDG----------AIFRGYASLLRASL 514 ++ S ++A+ +TP L + G Y + + L Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 515 KLRWLVLVGLIGTTVVCYAMFGQIKQQFFPDSNTPLYFVNYKLPQGAGIDQTSSDMQTLE 574 L+ +F ++ F P+ + ++ +LP GA ++T + + Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 575 NWLV--ERDDVIAVTSYSGMGASRFMLTYDSEDPNPSYGHLIV-----RVTTLDVIQSEM 627 ++ + E+ +V +V + +G + + N + + R + ++ + Sbjct: 595 DYYLKNEKANVESVFTVNGFS-------FSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 628 DELEAFAVEAVPQG---EFRVKR-LAFGPGGGAPIE-VRFSGADPAVLRDLADEAVERLS 682 + + + G F + + G G E + +G L ++ + + Sbjct: 648 HRAKM-ELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706 Query: 683 AASPNIISPRYDWREKELVLRPIYAGDRAQESGISRSDITSILQFATEGTAAGVFREGDR 742 +++S R + E + ++AQ G+S SDI + A GT F + R Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 743 QIPIILRTAPDA--GLSLMDHVIYSESNDTLVPMAQAIDGFRFEPQDTLVFRRDRANVIT 800 + ++ +D + +N +VP + + + R + + Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTT-SHWVYGSPRLERYNGLPSME 825 Query: 801 VGADIPRNLTAAGVLAEVRATIEDMS--IPDGYTMEWGGEYESSTDAQASLGSQLPMSII 858 + + A +E+++ +P G +W G + + + +S + Sbjct: 826 IQG----EAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFV 881 Query: 859 IMVLITVLLFNALRQPLIIWLLVPMSVNGVSLALLGTGLPFTFTALLGLLSLSGMLIKNG 918 ++ L L+ + P+ + L+VP+ + GV LA ++GLL+ G+ KN Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 919 IVLVEEIDLTRKADPDMPLEDAIVTASTSRLRPVFLAAATTILGMLPLLWD-----AFFQ 973 I++VE + +A + A RLRP+ + + ILG+LPL Sbjct: 942 ILIVEFA-KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQN 1000 Query: 974 SMAATIMGGLAFASLLTMVAAPVLYYVFFKRSKG 1007 ++ +MGG+ A+LL + PV + V + KG Sbjct: 1001 AVGIGVMGGMVSATLLAIFFVPVFFVVIRRCFKG 1034 Score = 63.3 bits (154), Expect = 4e-12 Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 13/205 (6%) Query: 814 VLAEVRATIEDM--SIPDGYTMEWGGEYESSTDAQASLGS---QLPMSIIIMVLITVLLF 868 ++A + ++ P G M+ Y+++ Q S+ L +I+++ L+ L Sbjct: 302 TAKAIKAKLAELQPFFPQG--MKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 869 NALRQPLIIWLLVPMSVNGVSLALLGTGLPFTFTALLGLLSLSGMLIKNGIVLVEEIDLT 928 +R LI + VP+ + G L G + G++ G+L+ + IV+VE ++ Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 929 RKADPDMPLEDAIVTASTSRLRPVFLAAATTILGMLPLLW-----DAFFQSMAATIMGGL 983 D P E A + + + A +P+ + A ++ + TI+ + Sbjct: 420 MMEDKLPPKE-ATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 984 AFASLLTMVAAPVLYYVFFKRSKGP 1008 A + L+ ++ P L K Sbjct: 479 ALSVLVALILTPALCATLLKPVSAE 503
>BACINVASINC#Salmonella/Shigella invasin protein C signature. Length = 409 Score = 27.5 bits (60), Expect = 0.042 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 124 LLTLHAIKSANERVLLAVALGKLNGSVTQFASQIGLTKEACYRALKDLSDQ 174 L++ A K+ ++ + L+GS++Q A Q+G+T K L ++ Sbjct: 153 LVSFDAAKTTASSMMRE-GMNALSGSISQSALQLGITGVGAKLEYKGLQNE 202
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.007 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 5/50 (10%) Query: 143 GVVAAGGTLGIMIPPSVPLIIYGLVAEEDIGKLFIAGTIPGLLLVLLFLA 192 GVV TL +++P L + LV +DIG + G ++ A Sbjct: 348 GVVTTAETLMVIVPEDDTLEVTALVQNKDIGFIN-----VGQNAIIKVEA 392
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 42.7 bits (100), Expect = 6e-07 Identities = 53/271 (19%), Positives = 96/271 (35%), Gaps = 59/271 (21%) Query: 8 VTGVASGIGAELARVLKTQGHRVIGFD-------LHETHVNVDRF----IPLDLDDMESI 56 +TG A GIG +AR L +QG + D + + + P D+ D +I Sbjct: 13 ITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAI 72 Query: 57 AAATRQLDE---PLNGLCNNAGL---PPRDGLEV----TILQVNFLGTRAFTQRLRDHLL 106 T +++ P++ L N AG+ L VN G ++ + +++ Sbjct: 73 DEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYMM 132 Query: 107 P--AASILNMASRAGHGWRDGIDQVKRLAQLTRRDQLEDFVRTEAITATQCYNLSKEAII 164 + SI+ + S R + Y SK A + Sbjct: 133 DRRSGSIVTVGSNPAGVPRTSM---------------------------AAYASSKAAAV 165 Query: 165 LWTIAETEAMVARDIRVNSLSPGGVLTGI--------IGDFQRAFGD-KMAKNVARAGRT 215 ++T + +IR N +SPG T + G Q G + K + Sbjct: 166 MFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKL 225 Query: 216 GTAEEIAEIAAFVLSPASNWLKGEDIAIDGG 246 +IA+ F++S + + ++ +DGG Sbjct: 226 AKPSDIADAVLFLVSGQAGHITMHNLCVDGG 256
>SECA#SecA protein signature. Length = 901 Score = 32.2 bits (73), Expect = 0.003 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 11/78 (14%) Query: 62 ERILRRARTITSEVSRLEEEVAQLRGEQVGAVTVGLSPLAAV-----RVMPRALTLFRKT 116 +R LRR R + + ++ +E E+ +L E++ T ++P A + R+ Sbjct: 15 DRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLENLIPEAFAVVREA 74 Query: 117 HANI------DVRLTGGL 128 + DV+L GG+ Sbjct: 75 SKRVFGMRHFDVQLLGGM 92
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 25.9 bits (57), Expect = 0.036 Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 3/32 (9%) Query: 62 YAARLAASDQPQLQAWGERLADLKALCDRAIA 93 + + + D ++ ER AD++ + R + Sbjct: 112 FVSMFESMDNEYMK---ERAADIRDVSKRVLG 140
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.020 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Query: 138 AMLGYVGLGPYTMLNTNFGTLVGYMTLTLPLVVILQTVTMANIDKNLIEAARNLGCSPLR 197 +LG + + N T+ G M L + L+V V + N+++ ++E + + Sbjct: 375 VLLGTFAILAAFGYSINTLTMFG-MVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEK 433 Query: 198 TIWQVIIPLSKTGLIIAAIFCFILSFGDFVAPFY 231 ++ Q+ L ++++A+F + FG Y Sbjct: 434 SMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIY 467
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 90.5 bits (224), Expect = 6e-24 Identities = 66/253 (26%), Positives = 110/253 (43%), Gaps = 11/253 (4%) Query: 10 LSGKVACITGASSGLGRRAALTLAAAGAKVVGVARRADALDNLCAEI---GPAAAAVVAD 66 + GK+A ITGA+ G+G A TLA+ GA + V + L+ + + + A A AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 67 VASRDGLERTVADISAPFGAPDILVHAAGVNTREAADDVTFNGWDQTLALNLSAPFFLSK 126 V ++ A I G DILV+ AGV ++ W+ T ++N + F S+ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 127 AFVPEMRKKGWGRIVNFASLQTTRAFPGGIAYGATKGGIAQLTRAMAEAWSPDGITANAI 186 + M + G IV S AY ++K T+ + + I N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 187 GPGFFPTELTAAVFEDDARAARNAAQTC--------IGRNGTLSDMDGPILFLCSDASAY 238 PG T++ +++ D+ A + + + + SD+ +LFL S + + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 239 VTGQVLMVDGGFT 251 +T L VDGG T Sbjct: 246 ITMHNLCVDGGAT 258
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 32.3 bits (73), Expect = 0.006 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 25/119 (21%) Query: 14 WKADPEAFWMKAAEAINWDEKPSKALFDKGDNLYEWFADAKCNTCYNAVDRH----VEAG 69 + PE F AI W++K ++ + D L + A++ + + Sbjct: 43 FIERPEDFLKDKENAIQWEKKEAERVEKNLDTLEK-----------EALELYKKDSEQIS 91 Query: 70 RGEQTAII-YDSPITHTKREISYVELRNRVATLAGALRAKGIEKGDRVIIYMPMVPEAL 127 QT YD I RE Y LRN A+ I+K + +Y PE Sbjct: 92 NYSQTRQYFYDYQIESNPREKEYKNLRN-------AISKNKIDK--PINVYYFESPEKF 141
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 0.001 Identities = 20/172 (11%), Positives = 41/172 (23%), Gaps = 16/172 (9%) Query: 105 EAPAAAAPAPAPAPRVAAAKPAAAPKPAPKPVVAKPAPRVAPAPQPRVIDATPTTRPAPQ 164 E P + + +P A P P V +P+ T P Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN--------IKEPQSQTNTTADTEQPA 1172 Query: 165 RVQQARIQPAPQRVQPVQRTIAPVPAP--------APRQVQRVTRATTCANFTGISAQYA 216 + + ++ V + V P P + + + + Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPH 1232 Query: 217 GSGPGVRCGSQTQPVTGAVQVQRQPVTVMRNGQKKTVQQRVAQQPSSAPEIS 268 P + V V+ + + K + + + IS Sbjct: 1233 NVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHIS 1284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 57.0 bits (137), Expect = 3e-10 Identities = 55/323 (17%), Positives = 101/323 (31%), Gaps = 10/323 (3%) Query: 183 KLKGAETNLTRVDDVLEQLAAQLAQLARQARQ-AARYREIGDELRRAEGLL--LYRRWKE 239 L+ + + + L + + L+ + E+ +EL A+ L + E Sbjct: 51 TLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSE 110 Query: 240 AQVAHLEEQNILKERTVAAAQAEAAAREATKLRQQREDALPALREEEAIAAAVLQRLSVQ 299 E + + A A + + + E AL +A L+ Sbjct: 111 KASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNF 170 Query: 300 RDTLEDQEKRAIATIETLEARIRQLAADMEREEALNRDAGETIARLEWETEELKKAGAGH 359 + K A LEAR +L +E + I LE E L A Sbjct: 171 STADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL 230 Query: 360 EAKLAQAAEASQEAAQVLQARENALSELTEDVARLAARHQSAQRLL-------EDSRKTE 412 E L A S + ++ E + L A L + A + + Sbjct: 231 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 290 Query: 413 ARSSEEAEKAKRAAGEARALLEKAAVDFEAAQQAESAATKRSQDAEEALTAAEAARAATQ 472 A E + + A + D +A+++A+ Q EE +EA+R + + Sbjct: 291 AALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLR 350 Query: 473 SREADARAELSEADGEVNALSAE 495 +R + + E L + Sbjct: 351 RDLDASREAKKQLEAEHQKLEEQ 373 Score = 56.6 bits (136), Expect = 4e-10 Identities = 67/348 (19%), Positives = 128/348 (36%), Gaps = 11/348 (3%) Query: 162 RILEEAAGISGLYQRRHEAELKLKGAETNLTRVDDVLEQLAAQLAQLARQARQAARYREI 221 + + + L E +L A+ L + D L + A+++ +L +AR+A + + Sbjct: 72 KNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQEL--EARKADLEKAL 129 Query: 222 GDELRRAEGLLLYRRWKEAQVAHLEEQNILKERTVAAAQAEAAAREATKLRQQREDALPA 281 + + + EA+ A L + E+ + A + A A + E A Sbjct: 130 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKI--KTLEAEKAA 187 Query: 282 LREEEAIAAAVLQRLSVQRDTLEDQEKRAIATIETLEARIRQLAADMEREEALNRDAGE- 340 L +A L+ + K A L AR L +E + Sbjct: 188 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK 247 Query: 341 ------TIARLEWETEELKKAGAGHEAKLAQAAEASQEAAQVLQARENALSELTEDVARL 394 A LE EL+KA G + + A E ++L L Sbjct: 248 IKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVL 307 Query: 395 AARHQSAQRLLEDSRKTEARSSEEAEKAKRAAGEARALLEKAAVDFEAAQQAESAATKRS 454 A QS +R L+ SR+ + + E +K + + A + D +A+++A+ Sbjct: 308 NANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEH 367 Query: 455 QDAEEALTAAEAARAATQSREADARAELSEADGEVNALSAEASALARL 502 Q EE +EA+R + + +R + + + +++ +AL +L Sbjct: 368 QKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKL 415 Score = 49.3 bits (117), Expect = 8e-08 Identities = 72/361 (19%), Positives = 129/361 (35%), Gaps = 14/361 (3%) Query: 146 QGQISELINAKPKSRRRILEEAAGISGLYQRRHEAELKLKGAETNLTRVDDVLEQLAAQL 205 ++S K+ + + E+A+ I L R+ + E L+GA T ++ L A+ Sbjct: 91 TEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEK 150 Query: 206 AQLARQARQAARYREIGDELRRAEGLLLYRRWKEAQVAHLEEQNILKERTVAAAQAEAAA 265 A LA + + E A + K + + E A A + Sbjct: 151 AALAARKADLEKALEGAMNFSTA----DSAKIKTLEAEKAALEARQAELEKALEGAMNFS 206 Query: 266 REATKLRQQREDALPALREEEAIAAAVLQRLSVQRDTLEDQEKRAIATIETLEARIRQLA 325 + + E AL +A L+ + K A LEAR +L Sbjct: 207 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 266 Query: 326 ADMEREEALNRDAGETIARLEWETEELKKAGAGHEAKLAQAAEASQEAAQVLQARENALS 385 +E + I LE E L+ A E + Q + L A A Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK 326 Query: 386 ELTEDVARLAARHQSA-------QRLLEDSRKTEARSSEEAEKAKRAAGEARALLEKAAV 438 +L + +L +++ + +R L+ SR+ + + E +K + + A + Sbjct: 327 QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRR 386 Query: 439 DFEAAQQAESAATKRSQDAEEALTAAEAARAATQSREADARAELSEADGEVNALSAEASA 498 D +A+++A+ K ++A L A E + + E +E + L AEA A Sbjct: 387 DLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAK---LEAEAKA 443 Query: 499 L 499 L Sbjct: 444 L 444 Score = 37.0 bits (85), Expect = 5e-04 Identities = 51/294 (17%), Positives = 91/294 (30%), Gaps = 14/294 (4%) Query: 240 AQVAHLEEQNILKERTVAAAQAEAAAREATKLRQQREDALPALREEEAIAAAVLQRLSVQ 299 + VA + + L++ A + E AL++ L + Sbjct: 41 SAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEK 100 Query: 300 RDTLEDQEKRAIATIETLEARIRQLAADMEREEALNRDAGETIARLEWETEELKKAGAGH 359 + + I+ LEAR L +E + I LE E L A Sbjct: 101 LRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL 160 Query: 360 EAKLAQAAEASQEAAQVLQARENALSELTEDVARLAARHQSAQRLLEDSRK--------- 410 E L A S + ++ E + L A L + A Sbjct: 161 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 220 Query: 411 -TEARSSEEAEKAKRAA----GEARALLEKAAVDFEAAQQAESAATKRSQDAEEALTAAE 465 A + EKA A A ++ + A + ++ K + A TA Sbjct: 221 AALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADS 280 Query: 466 AARAATQSREADARAELSEADGEVNALSAEASALARLVERDTAEGGQIIDQLQV 519 A ++ +A AE ++ + + L+A +L R ++ Q+ + Q Sbjct: 281 AKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQK 334 Score = 36.2 bits (83), Expect = 8e-04 Identities = 41/269 (15%), Positives = 83/269 (30%), Gaps = 8/269 (2%) Query: 628 AAALRLEQMNRLEALKQQMEAATSKAQGARLAHQVLTEQLKRDGEADKAAREARRAADTA 687 A+ E R L++ +E A + + + L + +A A Sbjct: 111 KASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNF 170 Query: 688 VAEAARALSRAEADRTLAESRLDSLGLAVKRHEDEAMAARRSLQEAERGLAGLGN-LETA 746 + + EA++ E+R L A++ + + A ++ E A L Sbjct: 171 STADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL 230 Query: 747 RAEVEDVKMTVEAARMTMMAKRSGHDELRREGEARTRRGQEVTKELSGWRHRLETAEKRI 806 +E A + + L + + + +++T E Sbjct: 231 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 290 Query: 807 AELAERKTASEAELKDATAAPEEIAAKREELGHSISQAEARKAKASDALSTAEGAERDAT 866 A L K E + + A + + + + Q EA K + +E + + Sbjct: 291 AALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQ--- 347 Query: 867 LAEREAERAASEAREARARSEARTDAAGE 895 R +REA+ + EA E Sbjct: 348 ----SLRRDLDASREAKKQLEAEHQKLEE 372
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.9 bits (67), Expect = 0.007 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Query: 101 AVAAGVGVAMSLGH--GAPVVLLMGVMTGTFGGLMR 134 +V++G+ A + GAPV L+G +TG G++ Sbjct: 377 SVSSGISAA-ATTSLVGAPVSALVGAVTGIISGILE 411
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.8 bits (67), Expect = 0.013 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Query: 125 TSEPAAIV--LNRQAFNDLLVPSSRQDLIQLMRD 156 T+ PA++ L + + L S++ L+Q M D Sbjct: 176 TTTPASMAATLRKLLTSQRLSARSQRQLLQWMVD 209
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 2e-19 Identities = 29/117 (24%), Positives = 54/117 (46%) Query: 2 KYLLVEDNLELAEAVASRIRLDGHTVDHAAKIADANAFADTGEYDLILLDIMLPDGDGRS 61 L+ +D+ + + + G+ V + A + G+ DL++ D+++PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 FLKQHRARKNLTPVIVLTARSQVSDRISLLDLGADDYLTKPFDHAELQARCRAVLRR 118 L + + + PV+V++A++ I + GA DYL KPFD EL L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.1 bits (65), Expect = 0.038 Identities = 30/183 (16%), Positives = 61/183 (33%), Gaps = 4/183 (2%) Query: 5 LILLCFAYVLSQFYRAFLAVLTEVLERDVGASPEDLATASGLWFLAFAAMQIPVGWALDK 64 LI LC S L V + D P + + L F+ G D+ Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 65 VGPRRTASVLLLIGGGGGAAVFALASAPVHISIAMLLIGVGCSPVLMASYYIFARTYPAA 124 +G +R ++I G F S + +A + G G + + AR P Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 125 VFATLAAVILGVGSVGNLASALPTTLAVEAFGWRAVVGGTAVVSVLTALGLFFIVRDPEA 184 +I + ++G + W ++ ++ ++T + + F+++ + Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL----LIPMITIITVPFLMKLLKK 191 Query: 185 AQS 187 Sbjct: 192 EVR 194
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 139 bits (351), Expect = 2e-42 Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 10/252 (3%) Query: 3 LEGKTAIVTGGASGFGAGIARKFAAEGAQVMIVDINHDGAMGMAEELGAGSF---GHVAN 59 +EGK A +TG A G G +AR A++GA + VD N + + L A + A+ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 60 VAVSADVAETVATARQVFGEVDILVNNAGVTHLPKPMEEVSEEEFDRVFAVNCKSVYLFA 119 V SA + E A + G +DILVN AGV P + +S+EE++ F+VN V+ + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLR-PGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 120 HELAPFMKQRRAGAILNIASTAGVSPRPNLNWYNASKGWMNTATKAMAVELAPHGVRVNA 179 ++ +M RR+G+I+ + S PR ++ Y +SK TK + +ELA + +R N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 180 LNPVAGETPLLASFMGEDTPEMR------AKFISTIPIGRFSTPEDLGNAACFMCSDEAS 233 ++P + ET + S ++ + F + IP+ + + P D+ +A F+ S +A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 234 MITGVCMEVDGG 245 IT + VDGG Sbjct: 245 HITMHNLCVDGG 256
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 29.7 bits (66), Expect = 0.017 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 14/103 (13%) Query: 196 TSHGAYKFSKKPTGETLAIKRIEEIHAKIPNVHLVMHGSSSVPQYLQDLINEYGGEMPQT 255 +S + K + + L I I+EI + + +VP +LQ+L+ Y GE Sbjct: 103 SSSSSDKVNNASDAKDLFIDSIKEISQQTKDSKNNELLHWAVPYFLQNLVFVYRGE---- 158 Query: 256 YGVPVEEIERG-------IKSGVRKVNIDTDNRMAITGTWRKI 291 + E+E+ IK+ V+ + DNR+ R I Sbjct: 159 ---KISELEQENVSWTDVIKAIVKHKDRFNDNRLVFIDDARTI 198
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 98.2 bits (244), Expect = 2e-26 Identities = 72/258 (27%), Positives = 113/258 (43%), Gaps = 15/258 (5%) Query: 10 LTGKVALVTGGATGIGRMAAEGLVAAGARVFIASRKAEACEAVAAELNTKGYSGTAEGFG 69 + GK+A +TG A GIG A L + GA + E E V + L + AE F Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEAR--HAEAFP 63 Query: 70 GDVATEEGIAALVAEVQSRTDTLHILMNNAGRSWGAPMGQHPYDAWDKLLKLNVQGMFHL 129 DV I + A ++ + IL+N AG + + W+ +N G+F+ Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 130 TQSLLPLLLKAASPEDPARVVNVGSVMGEVPKGTATYSYAVSKGAVHHMTRVLSNDLAPE 189 ++S+ ++ S +V VGS VP+ T+ +YA SK A T+ L +LA Sbjct: 124 SRSVSKYMMDRRS----GSIVTVGSNPAGVPR-TSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 190 FITVNAIAPGPFPSKMTDFALGSEEGRAESAK--------GVPLGRVGTAEDIAGALQFL 241 I N ++PG + M E G + K G+PL ++ DIA A+ FL Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 242 CSRAGAYVSGAILPLSGG 259 S +++ L + GG Sbjct: 239 VSGQAGHITMHNLCVDGG 256
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 27.8 bits (62), Expect = 0.040 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 29/102 (28%) Query: 16 LYFAALFLLGLAANLVGLYGGYWLGLQLNKVLVGLGVSFGEYSWMILPFFLAIMFWGVAA 75 + L AN V ++ + L L + ++L+G+ L F + F V Sbjct: 48 MMITFAIAPSLPANDVPVFSFFALWLAVQQILIGI----------ALGFTMQFAFAAVRT 97 Query: 76 ATVI-----------------GSSVTRVGQFMGGHMFVTVLL 100 A I ++ + + M M +L Sbjct: 98 AGEIIGLQMGLSFATFVDPASHLNMPVLARIM--DMLALLLF 137
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 111 bits (280), Expect = 1e-26 Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 6/178 (3%) Query: 1110 ANAQGASIDNVEMYELIQGAGGDDSVLGDLGDDVIVAGAGEDTVRGGMGNDSILGNSGND 1169 DN+ E + G D G D+ G+D + G GND + G+ GND Sbjct: 706 NGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGND 765 Query: 1170 SIYGNEGDDTILGGAGNDSIYGETGNDYVSGGVGDDSLE---GNEGADTIIGGAGNDWVR 1226 ++ G GDD + GG GND + G GN+Y++GG GDD + + + + GG GND + Sbjct: 766 TLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLY 825 Query: 1227 GSFGNDSIEGNEGDDFLWGGYGDDTIVFADNFGDDTVEGEEAQETDGDTIDLSGITSD 1284 GS G D ++G EGDD L GGYG+D + +G + + D + L+ I Sbjct: 826 GSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHII---DDDGGKEDKLSLADIDFR 880 Score = 110 bits (277), Expect = 4e-26 Identities = 81/292 (27%), Positives = 113/292 (38%), Gaps = 34/292 (11%) Query: 1756 GAGNDSVVAGFGDDTIFAGAGIDTVAGGDGNDSI------------------FGEAGNDV 1797 G G+D V G I+AG G D V + V Sbjct: 617 GDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKV 676 Query: 1798 LNGGAGNDTVSGGGGNDSILGDIGADSLSGGSGDDTVN---------GGTGDDWVNGNDG 1848 L VS G + + G + G T D G+ Sbjct: 677 LQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKF 736 Query: 1849 NDTVYGGEGNDSVFGAEGNDVMFGEDGADSMEGWLGDDTMSGGTGNDYLDGADGDDLLVG 1908 D +G +G+D + G +GND ++G+ G D++ G GDD + GG GND L G G++ L G Sbjct: 737 TDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNG 796 Query: 1909 DDGNDTL-LGGNNGGADTLIGGVGNDYLSAGDGDDLLQGGSGDDQMIGAEGQDTFSLDDS 1967 DG+D + GN+ + L GG GND L +G DLL GG GDD + G G D + Sbjct: 797 GDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSG 856 Query: 1968 FGMDTISGGSGGID---FDQIDASNMTTAV---NLTLTVAEGGTLVSGADTA 2013 +G I G D ID ++ +L + EG L G Sbjct: 857 YGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNG 908 Score = 103 bits (257), Expect = 7e-24 Identities = 78/267 (29%), Positives = 107/267 (40%), Gaps = 16/267 (5%) Query: 382 GSNRDSVEAGAGADTVNSGDGADTVRGEAGDDLIYGDNYTALDAGDLLDGGAGNDTIYGG 441 G D V AG+ + +G G D V + D G Y +D + G T G Sbjct: 617 GDGDDKVFLSAGSANIYAGKGHDVVYYDKTD---TG--YLTIDGTKATEAGNYTVTRVLG 671 Query: 442 GGRDMILGGAGADSLFGEIGNDTVFGGDGSDTISGGAGDDVLDGDDATATAGADSIDGAA 501 G ++ + + T G D + + + G Sbjct: 672 GDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSV-----EELIGTT 726 Query: 502 GNDEIIGDEGNDTLIGGTGNDTIYAGNDDDIAYGDEGQDQLFGGAGDDSLYGGDDADSLY 561 D+ G + D G G+D I + +D YGD+G D L GG GDD LYGGD D L Sbjct: 727 RADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLI 786 Query: 562 GEAGGDFLSGGAGDDYI---DGGIDGDDIDGGAGNDTVLGGTGNDNIDGNDGADSLQGGS 618 G AG ++L+GG GDD + + + GG GND + G G D +DG +G D L+GG Sbjct: 787 GVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGY 846 Query: 619 GADSIW---GDAGDDYIDGGDDGDALY 642 G D G D G D L Sbjct: 847 GNDIYRYLSGYGHHIIDDDGGKEDKLS 873 Score = 103 bits (257), Expect = 7e-24 Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 7/204 (3%) Query: 1737 DMVDNLDAADGSNDDTISAGAGNDSVVAGFGDDTIFAGAGIDTVAGGDGNDSIFGEAGND 1796 ++V + + G + + + + G ++ + G D FG D Sbjct: 679 EVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKFTD 738 Query: 1797 VLNGGAGNDTVSGGGGNDSILGDIGADSLSGGSGDDTVNGGTGDDWVNGNDGNDTVYGGE 1856 + +G G+D + G GND + GD G D+LSGG+GDD + GG G+D + G GN+ + GG+ Sbjct: 739 IFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGD 798 Query: 1857 GNDSVFGAEGNDVMFGEDGADSMEGWLGDDTMSGGTGNDYLDGADGDDLLVGDDGNDTLL 1916 G+D F +GN + + + G G+D + G G D LDG +GDDLL G GND Sbjct: 799 GDD-EFQVQGNSL-----AKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYR 852 Query: 1917 GGNNGGADTLI-GGVGNDYLSAGD 1939 + G + G D LS D Sbjct: 853 YLSGYGHHIIDDDGGKEDKLSLAD 876 Score = 88.1 bits (218), Expect = 3e-19 Identities = 69/276 (25%), Positives = 102/276 (36%), Gaps = 30/276 (10%) Query: 449 GGAGADSLFGEIGNDTVFGGDGSDTISGGAGDD---VLDGDDATATAGADSIDGAAGNDE 505 G G D +F G+ ++ G G D + D +DG AT AG ++ G D Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKAT-EAGNYTVTRVLGGDV 674 Query: 506 IIGDEG---NDTLIGGTGNDTIYAGNDDDIAYGD--------EGQDQLFGGAGDDSLYGG 554 + E + +G T Y + G ++L G D +G Sbjct: 675 KVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGS 734 Query: 555 DDADSLYGEAGGDFLSGGAGDDYIDGGIDGDDIDGGAGNDTVLGGTGNDNIDGNDGADSL 614 D +G G D + G G+D + G D + GG G+D + GG GND + G G + L Sbjct: 735 KFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYL 794 Query: 615 QGGSGADSIWGDAGDDYIDGGDDGDALYGGAGADEIIGGSGGDFISVDSGADTVSGGADA 674 GG G D + L+GG G D++ G G D + G D + GG Sbjct: 795 NGGDGDDEF------QVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGN 848 Query: 675 DNIVVAAGAFADGTVVTVDGGSTATTGADNDTLNLS 710 D +G G D L+L+ Sbjct: 849 DIYRYLSGYGHH---------IIDDDGGKEDKLSLA 875 Score = 73.5 bits (180), Expect = 8e-15 Identities = 82/298 (27%), Positives = 107/298 (35%), Gaps = 74/298 (24%) Query: 1834 VNGGTGDDWVNGNDGNDTVYGGEGNDSVFGAEGNDVMFGEDGADSME-GWLGDDTMSGGT 1892 + G GDD V + G+ +Y G+G+D V+ + + DG + E G + GG Sbjct: 614 SHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGD 673 Query: 1893 GNDYLDGADGDDLLVGD--------DGNDTLLGGNNGGA-DTL------IGGVGNDYLSA 1937 + ++ VG T + G N D L IG D Sbjct: 674 VKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFG 733 Query: 1938 GDGDDLLQGGSGDDQMIGAEGQDTFSLDDSFGMDTISGGSGGIDFDQIDASNMTTAVNLT 1997 D+ G GDD + G +G D D G DT+SGG+G DQ+ Sbjct: 734 SKFTDIFHGADGDDLIEGNDGNDRLYGDK--GNDTLSGGNGD---DQLYG---------- 778 Query: 1998 LTVAEGGTLVSGADTASFDDIELFSLGSGNDTVTGGVGNENVVLGLGDDFAE-------- 2049 G GND + G GN + G GDD + Sbjct: 779 --------------------------GDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAK 812 Query: 2050 ----GGAGNDTLAGSEGDDTLSGGAGADELSGGDGND-----SISVNENDTASGGDGD 2098 GG GND L GSEG D L GG G D L GG GND S + GG D Sbjct: 813 NVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKED 870 Score = 73.5 bits (180), Expect = 1e-14 Identities = 46/146 (31%), Positives = 62/146 (42%), Gaps = 24/146 (16%) Query: 1454 DSVVAGAGDDTVQSFAGNDSIDAGTGNDSVDAGDGDDNIVGGGGNDTLQGWFGDDSLTGD 1513 D GDD ++ GND + GND++ G+GDD + GG GND L G G++ L G Sbjct: 738 DIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGG 797 Query: 1514 DGDD---------------------SLIGWTGDDTLAGGIGADSIEGGDDQDVIILEDAF 1552 DGDD L G G D L GG G D ++GG D+ + Sbjct: 798 DGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGY 857 Query: 1553 GQDTIDGGDGGATDFDTLDMSALTVD 1578 G ID G D L ++ + Sbjct: 858 GHHIIDDDGGKE---DKLSLADIDFR 880 Score = 70.4 bits (172), Expect = 7e-14 Identities = 74/319 (23%), Positives = 115/319 (36%), Gaps = 62/319 (19%) Query: 649 EIIGGSGGDFISVDSGADTVSGGADADNIVVAAGAFADGTVVTVDGGSTATTGADNDTLN 708 E G G D + + +G+ + G D + D +T+DG G T Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKT---DTGYLTIDGTKATEAGNYTVTRV 669 Query: 709 LSSWAS-YANLTQTNDPDANSTSGSVDVTD-------GAGNTITVNFTEIEALILPSILD 760 L + + + + G T T N +E LI Sbjct: 670 LGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELI------ 723 Query: 761 YIVEGTAGNDLIDGSYLLDP--EGDRVDNSDHSDGSNDDRIEAGDGDDTILGGSGADSIY 818 GT D GS D D D + +DG +DR+ G+DT+ GG+G D +Y Sbjct: 724 ----GTTRADKFFGSKFTDIFHGADGDDLIEGNDG--NDRLYGDKGNDTLSGGNGDDQLY 777 Query: 819 AGTGNDTVYDETDVASTSDTSADFVDLGDGNDVFIGTGLGPSDQDTIFGGAGNDTISVRQ 878 G GND + ++++ GDG+D F G + ++ +FGG GN Sbjct: 778 GGDGNDKLIGV--------AGNNYLNGGDGDDEFQVQGNSLA-KNVLFGGKGN------- 821 Query: 879 SYDTVFGGDGDDLITSEDELSVYGDWLSGDAGNDTIIGANTDDTILGGTGDDSIQGGGSG 938 D ++G +G DL L G G+D + G +D +G G Sbjct: 822 --DKLYGSEGADL-------------LDGGEGDDLLKGGYGNDIYRYLSGY------GHH 860 Query: 939 DIIDGGTGDDTILADDLTA 957 I D G +D + D+ Sbjct: 861 IIDDDGGKEDKLSLADIDF 879 Score = 67.3 bits (164), Expect = 7e-13 Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 9/129 (6%) Query: 2003 GGTLVSGADTASFDDIELFSLGSGNDTVTGGVGNENVVLGLGDDFAEGGAGNDTLAGSEG 2062 G T + F DI F G+D + G GN+ + G+D GG G+D L G +G Sbjct: 724 GTTRADKFFGSKFTDI--FHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDG 781 Query: 2063 DDTLSGGAGADELSGGDGNDSISVNENDTAS----GGDGDDYFEVLPGSEV---GAGTIN 2115 +D L G AG + L+GGDG+D V N A GG G+D G+++ G G Sbjct: 782 NDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDL 841 Query: 2116 IVGGEGAET 2124 + GG G + Sbjct: 842 LKGGYGNDI 850 Score = 64.6 bits (157), Expect = 4e-12 Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 1471 NDSIDAGTGNDSVDAGDGDDNIVGGGGNDTLQGWFGDDSLTGDDGDDSLIGWTGDDTLAG 1530 D D DGDD I G GND L G G+D+L+G +GDD L G G+D L G Sbjct: 728 ADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIG 787 Query: 1531 GIGADSIEGGDDQDVIILED-AFGQDTIDGGDG 1562 G + + GGD D ++ + ++ + GG G Sbjct: 788 VAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKG 820 Score = 62.3 bits (151), Expect = 2e-11 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 1/108 (0%) Query: 1456 VVAGAGDDTVQSFAGNDSIDAGTGNDSVDAGDGDDNIVGGGGNDTLQGWFGDDSLTGDDG 1515 ++ D D G+D ++ DG+D + G GNDTL G GDD L G DG Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDG 781 Query: 1516 DDSLIGWTGDDTLAGGIGADSIEGGDDQDVI-ILEDAFGQDTIDGGDG 1562 +D LIG G++ L GG G D + + +L G D + G +G Sbjct: 782 NDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEG 829 Score = 60.0 bits (145), Expect = 1e-10 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 1450 GTNADSVVAGAGDDTVQSFAGNDSIDAGTGNDSVDAGDGDDNIVGGGGNDTLQGWFGDDS 1509 T AD D G+D I+ GND + G+D + GG G+D L G G+D Sbjct: 725 TTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDK 784 Query: 1510 LTGDDGDDSLIGWTGDDTLA---GGIGADSIEGGDDQDVIILEDAFGQDTIDGGDG 1562 L G G++ L G GDD + + + GG D + + G D +DGG+G Sbjct: 785 LIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSE--GADLLDGGEG 838 Score = 50.0 bits (119), Expect = 1e-07 Identities = 54/268 (20%), Positives = 89/268 (33%), Gaps = 22/268 (8%) Query: 925 GGTGDDSIQGGGSGDIIDGGTGDDTILADD-----LTATGANLIVNGSFEDTTGMETRTW 979 G GDD + I G G D + D LT G G++ T + Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDV- 674 Query: 980 GFVAPGGSVSGWTDANGSSIEFVNNGRGGLLATEGNNWLDTEGLAGQNLVISQAVAGVSD 1039 V + G E G N +T+ L +I A Sbjct: 675 --KVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFF 732 Query: 1040 GEVYALRFDAGDLVDAHDGTALDNQFQVIWNGEVIASIDPSDGSWTSYEFYLTGGSGD-- 1097 G + F D D +G +++ + ++ + D L GG G+ Sbjct: 733 GSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDD--------QLYGGDGNDK 784 Query: 1098 --GSNTLTFVGSGQANAQGASIDNVEMYELIQGAGGDDSVLGDLGDDVIVAGAGEDTVRG 1155 G ++ G + + N ++ G G+D + G G D++ G G+D ++G Sbjct: 785 LIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKG 844 Query: 1156 GMGNDSIL--GNSGNDSIYGNEGDDTIL 1181 G GND G+ I + G + L Sbjct: 845 GYGNDIYRYLSGYGHHIIDDDGGKEDKL 872 Score = 48.4 bits (115), Expect = 4e-07 Identities = 41/187 (21%), Positives = 68/187 (36%), Gaps = 12/187 (6%) Query: 1450 GTNADSVVAGAGDDTVQSFAGNDSIDAGTGNDSVDAGDGDDNIVGGGGNDTLQGWFGDDS 1509 V G + Q + + G D + ++G D G D Sbjct: 680 VVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKFTDI 739 Query: 1510 LTGDDGDDSLIGWTGDDTLAGGIGADSIEGGDDQDVI-------ILEDAFGQDTIDGGDG 1562 G DGDD + G G+D L G G D++ GG+ D + L G + ++GGDG Sbjct: 740 FHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDG 799 Query: 1563 GATDFDTLDMSALTVDTTVDLTSANPEAGSVTAGADIASFVDIENIVLGG-GTDTIVLAD 1621 D + ++ V + + GAD+ + ++++ GG G D Sbjct: 800 D----DEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLS 855 Query: 1622 GSGSDTV 1628 G G + Sbjct: 856 GYGHHII 862
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 38.4 bits (89), Expect = 1e-04 Identities = 16/35 (45%), Positives = 23/35 (65%) Query: 273 ALGIANIDLTGHAGADVLIGNAGDNVLDGGAGADT 307 A G+ + G +G D+L+GN+ DN+L GGAG D Sbjct: 335 AHGVTIENAIGGSGNDILVGNSADNILQGGAGNDV 369
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 84.3 bits (208), Expect = 4e-19 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 7/126 (5%) Query: 359 IDQNAGGPSGQVLEGSAAADELEGGAGADQILGGAGDDRLNGGAGADIILDGAGSDRMWG 418 G + + GG+G D ++G + D+ L GGAG D++ GAG+D ++G Sbjct: 322 FSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYG 381 Query: 419 GAGADIFV-----LSGDGENDFIEDFEIGVDRIDMSDMGRFY--SFEALTFESKNYGAII 471 GAG D FV S D+I DF+ G+D+ID+S SF F K ++ Sbjct: 382 GAGRDTFVYGSGQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVML 441 Query: 472 GFGGET 477 + Sbjct: 442 QWDAAN 447 Score = 33.4 bits (76), Expect = 0.004 Identities = 13/29 (44%), Positives = 21/29 (72%) Query: 799 DDILDGGAGRNVLFGGMWTDSFVFDAQED 827 +D+L GGAG + L+GG D+FV+ + +D Sbjct: 367 NDVLYGGAGADTLYGGAGRDTFVYGSGQD 395
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.014 Identities = 12/45 (26%), Positives = 18/45 (40%) Query: 36 IILGPNGAGKSTLLRLLHGLEKPSEGRVRFAAPRAEAYAQQAFVF 80 ++ G G GKSTL+ L GL+ S+ + V Sbjct: 600 VLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVA 644
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 29.4 bits (66), Expect = 0.021 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 14/76 (18%) Query: 167 KNAAQYLNHRYGIPVIGW---RH-------EMVTLDLDAALAYYKRFYAPNNAILV---V 213 K L + G PV+GW ++ + VT D A + Y+ + IL+ Sbjct: 68 KAVGGILQQQ-GWPVVGWSSLKYYWKQKDPKDVTQDTLAIIDKYQAEFGTQKVILIGYSF 126 Query: 214 AGDVTPEAVKALAEQY 229 +V P + + +Y Sbjct: 127 GAEVIPFVLNEMPARY 142
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 32.5 bits (73), Expect = 0.003 Identities = 40/231 (17%), Positives = 85/231 (36%), Gaps = 31/231 (13%) Query: 97 GSALYLLPNL-PAAWLPSQGENPMEALAQKLEAQSQEIAAMKAELADAGANEALEARVAD 155 +AL NL P + + + L+ ++Q++ + ++ GA L + Sbjct: 101 DAALGPAKNLAPLDVI----NRSLTIVGNALQQKNQKLLLNQKKITSLGAKNFLTRTAEE 156 Query: 156 VSGQ-------------VSGLAGEIAALKAP------VEAIAELGVRLDALEKAPVANAS 196 + Q + L E+ L A EAI+ L +R++ L A + + Sbjct: 157 IGEQAVREGNINGPEAYMRFLDREMEGLTAAYNVKLFTEAISSLQIRMNTLTAAKASIEA 216 Query: 197 PVAVEAYQREMDEL--RAEIGAMTAEAEAKRASAEMTAQEALRRSAMSQILTSLETGSG- 253 A +A ++ E +AE A A + M A ++ +A + L + G+ Sbjct: 217 AAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAAS 276 Query: 254 ----FAEAIESLSATGVNVPEALVAQAAGVPTVAGLSADFPEAAREALAAA 300 ++AI L + P + A + + + + + +++ A Sbjct: 277 LAQAISDAIAVLGRVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYA 327
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 135 bits (341), Expect = 4e-43 Identities = 43/159 (27%), Positives = 88/159 (55%), Gaps = 4/159 (2%) Query: 2 AENGAAPEAQAETPQVKMNVINQFIRDLSFENILAQKGVQGEVTPDVNVQVNLDAKKRSA 61 + AA + P +++ +++D+SFE Q + P ++ ++ +AK+ Sbjct: 5 NQVNAADTQATQQPVLQIQ--RIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQV-G 61 Query: 62 ENQFEVAIKLAITSVNKENTAEKLFLMEIDYVGIFSIAGVPEDQLHPFLLIECPRLLFPF 121 ++ +EV + +++ + E++ + F+ E+ G+F+I+G+ E Q+ L +CP +LFP+ Sbjct: 62 DDLYEVCLNISVETT-MESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPY 120 Query: 122 LRRIVSDVTRDGGFPPLNLETIDFMALYRNELMRRQADE 160 R +VS + G FP LNL ++F AL+ + L R++ E Sbjct: 121 ARELVSSLVNRGTFPALNLSPVNFDALFMDYLQRQEQAE 159
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.021 Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 1/77 (1%) Query: 37 DNSDIMLAIQHEGGLVAGAFSEGRMLGFLFGFPTSQPDVQHSHRLAVHPDSRGMGLGVKL 96 D+ + ++ EG + E +G + ++ +AV D R G+G L Sbjct: 52 DDDMDVSYVEEEGKAAFLYYLENNCIGRI-KIRSNWNGYALIEDIAVAKDYRKKGVGTAL 110 Query: 97 KWYQRDWCLERGITTVR 113 +W E + Sbjct: 111 LHKAIEWAKENHFCGLM 127
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.4 bits (66), Expect = 0.024 Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 26/182 (14%) Query: 135 LKAALGGVGSSVDVGVSLGIAPIEKTLDRIDEALASGYKRTKLKIAQGHDVKIVEAVRNQ 194 L AL G V + + TL R A T + + + ++ ++ Sbjct: 19 LNQALSRAGYDVRITSNA------ATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKA 72 Query: 195 YPDIKLTVDANTDYGLADLPVLQALDGFNLDYIEQPLAFDDIHD---HAQVQASLKTAIC 251 PD+ + V + + +A + DY+ +P ++ A + + + Sbjct: 73 RPDLPVLV--MSAQNTFMTAI-KASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKL 129 Query: 252 LDESVRSA-----SDARKALEMRAARVINIKV--------GRVGGFAAARAIHDTSAAFG 298 D+S S A + + AR++ + G G ARA+HD Sbjct: 130 EDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESG-TGKELVARALHDYGKRRN 188 Query: 299 AP 300 P Sbjct: 189 GP 190
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 29.8 bits (67), Expect = 0.010 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 163 VALVVYRTRLGAMVRAAA-FDRNMAASLGV--RVGWVYSGAFAFGVALAGLAGVLLAPIY 219 +A+ + + L A AA ++R+ A+ ++ WV +G +A L P+ Sbjct: 1 MAVGIPKDELKAYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLK 60 Query: 220 SVFP 223 +V P Sbjct: 61 TVEP 64
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.013 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 11/64 (17%) Query: 29 VIGLFGRNGVGKTTFFKTIAGWLRPTDGSVTL-----DGETLTGH------SPDAMNRAG 77 + L G G+GK+T T+ G +D + E + G A RA Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAFRRAD 657 Query: 78 VAIV 81 V Sbjct: 658 AEAV 661
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 147 bits (373), Expect = 6e-44 Identities = 75/346 (21%), Positives = 142/346 (41%), Gaps = 43/346 (12%) Query: 3 NVLVTGGAGYIGSHACKALRAAGFNPVTFDSLVTGWEDAVKFG----------PFERGDL 52 LVTG AG+IG H K L AG V D+L ++ ++K F + DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 53 LDRARLDEVFAAYRPVAVMHFAALSQVGESMQIPGKYWLNNAGGSLNLIEAAAAAGCKRF 112 DR + ++FA+ V V S++ P Y +N G LN++E + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 113 VFSSTCATYGDQDNVVLNEQ-SAQLPINAYGASKRAIEDMLSDFGASDGIESVIFRYFNV 171 +++S+ + YG + + S P++ Y A+K+A E M + G+ + R+F V Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181 Query: 172 AGADPEGDVGEYHQPETHLIPLILDAIDGKRAALTIFGTDYDTPDGTCIRDYVHVCDLVD 231 G P G P+ L ++GK ++ ++ G RD+ ++ D+ + Sbjct: 182 YG--PWGR------PDMALFKFTKAMLEGK--SIDVYN------YGKMKRDFTYIDDIAE 225 Query: 232 AHVLGLKWLAEGKGS---------------RVFNLGTGAGFSVREVMDRAAEVTGKPVPC 276 A + + RV+N+G + + + + + G Sbjct: 226 AIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKK 285 Query: 277 TEGPRRAGDCTKLVSGSKRAEEELGWRPQRSNLEEMVADAWMWHQS 322 P + GD + + +K E +G+ P+ + +++ V + W++ Sbjct: 286 NMLPLQPGDVLETSADTKALYEVIGFTPETT-VKDGVKNFVNWYRD 330
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 136 bits (343), Expect = 3e-37 Identities = 75/391 (19%), Positives = 141/391 (36%), Gaps = 89/391 (22%) Query: 2 SKVIGIDLGTTNSCIAIMDG-------SAARVIENSEGARTTPSIVAFTEDERLVGQSAK 54 S + IDLGT N+ I + S + + A + S+ A VG AK Sbjct: 10 SNDLSIDLGTANTLIYVKGQGIVLNEPSVVAI--RQDRAGSPKSVAA-------VGHDAK 60 Query: 55 RQAVTNPENTVFGVKRLIGRRFDDADLAKDKKHMPFNVVNGGNGDAWIEARGEKYSPSQI 114 + P N ++ + KD F V ++ Sbjct: 61 QMLGRTPGNIA-AIRPM-----------KDGVIADFFV------------------TEKM 90 Query: 115 SAFILGKMKETAESYLGEEVKQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAA 174 + ++ + + ++ VP +R+A +++ + AG + +I EP AA Sbjct: 91 LQHFIKQVHSNS---FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAA 147 Query: 175 ALAYGLDKKETQTIAVYDLGGGTFDVTILEIDDGLFEVKSTNGDTFLGGEDFDMRIVAYL 234 A+ GL E V D+GGGT +V ++ ++ + + +GG+ FD I+ Y+ Sbjct: 148 AIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYV 202 Query: 235 ADQFQKENGVDLTKDKMALQRLKEAAEKAKIELSSSSQTEINQPFISMGKD---GSPLHM 291 + G + AE+ K E+ S+ + + G++ G P Sbjct: 203 RRNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGF 249 Query: 292 VMKLTRAKLESL------VSDLIKNSLKPC----AAALKDAGLSTSDIDEVVLVGGMTRM 341 + + LE+L + + +L+ C A+ + + G +VL GG + Sbjct: 250 TLN-SNEILEALQEPLTGIVSAVMVALEQCPPELASDISERG--------MVLTGGGALL 300 Query: 342 PKVIEEVTKFFGKEPHKGVNPDEVVAMGAAI 372 + + + G +P VA G Sbjct: 301 RNLDRLLMEETGIPVVVAEDPLTCVARGGGK 331
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 57.6 bits (139), Expect = 4e-11 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 13/123 (10%) Query: 406 LTTSFRFETGSVRLDAQSRSNVEQLASALEAGIYDGKSLVFIGFSDGKGPAAANLEISRR 465 L + F L + ++ ++QL S L S+V +G++D G A N +S R Sbjct: 217 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSER 276 Query: 466 RAEVVKNAIEKAAETADFTQLDVSVQAYGEAMPMA---CDDTEWGRQV------NRRVEV 516 RA+ V + + AD +S + GE+ P+ CD+ + + +RRVE+ Sbjct: 277 RAQSVVDYLISKGIPAD----KISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEI 332 Query: 517 WIR 519 ++ Sbjct: 333 EVK 335
>SECA#SecA protein signature. Length = 901 Score = 1195 bits (3092), Expect = 0.0 Identities = 479/908 (52%), Positives = 612/908 (67%), Gaps = 26/908 (2%) Query: 4 LGSLAKKVFGTANDRKVKATKPLIDKINALEPSFESLSDEQIIAKTAEFKRRVADGESLD 63 L L KVFG+ NDR ++ + +++ INA+EP E LSDE++ KTAEF+ R+ GE L+ Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 64 DLLPEAFANCREAAKRALGLRAFDVQLMGGIFLHQGNISEMKTGEGKTLVATFPAYLNAL 123 +L+PEAFA REA+KR G+R FDVQL+GG+ L++ I+EM+TGEGKTL AT PAYLNAL Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 124 TGKGVHVVTVNDYLARRDAEWMSNVFSALGMTTGVIYPQQPESEKSEAYASDITYATNNE 183 TGKGVHVVTVNDYLA+RDAE +F LG+T G+ P P K EAYA+DITY TNNE Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 184 LGFDYLRDNMKSELKQINQKVHHFAVVDEVDSILIDEARTPLIISGPSEDRSELYIEIDK 243 GFDYLRDNM ++ Q+ H+A+VDEVDSILIDEARTPLIISGP+ED SE+Y ++K Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNK 241 Query: 244 LIPELT------------EEHYSLDEKTRNVTFSDEGNEFLEQLLRQRGVLEEEQSLYDP 291 +IP L E H+S+DEK+R V ++ G +E+LL + G+++E +SLY P Sbjct: 242 IIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 301 Query: 292 ESTTIVHHVNQGLRAHKLFIRDKDYIVRNGDVVLIDEFTGRMMAGRRLSEGLHQAIEAKE 351 + ++HHV LRAH LF RD DYIV++G+V+++DE TGR M GRR S+GLHQA+EAKE Sbjct: 302 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKE 361 Query: 352 GCNIQPENVTLAQVTFQNYFRLYDKLAGMTGTATTEAEEFMEIYGLGVVEVPTNKPIARI 411 G IQ EN TLA +TFQNYFRLY+KLAGMTGTA TEA EF IY L V VPTN+P+ R Sbjct: 362 GVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRK 421 Query: 412 DDDDAVYRTAQEKYAAIVETIKESNAKGQPILVGTTSIEKSEFLSEMLTKEGVKHNVLNA 471 D D VY T EK AI+E IKE AKGQP+LVGT SIEKSE +S LTK G+KHNVLNA Sbjct: 422 DLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA 481 Query: 472 RQHEQEAQIVADAGKLGAVTIATNMAGRGTDIKLGGNVEFKIMEAIAASPEDDNEEVRAK 531 + H EA IVA AG AVTIATNMAGRGTDI LGG+ + ++ A+ E+ E K Sbjct: 482 KFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEV-----AALENPTAEQIEK 536 Query: 532 IEADHKDWEQKVKDAGGLFVLATERHESRRIDNQLRGRSGRQGDPGRSSFYLSLEDDLMR 591 I+AD + V +AGGL ++ TERHESRRIDNQLRGRSGRQGD G S FYLS+ED LMR Sbjct: 537 IKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMR 596 Query: 592 IFGSERLDKVLSTLGMKEGEAIVHPWVNKSLERAQAKVEGRNFDIRKQLLKFDDVMNEQR 651 IF S+R+ ++ LGMK GEAI HPWV K++ AQ KVE RNFDIRKQLL++DDV N+QR Sbjct: 597 IFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQR 656 Query: 652 KVIFRQRRDIMEAADLSAITQDMRNQVIDDLVDEYMPPKTYADQWDTEGLYAACIEKLGI 711 + I+ QR ++++ +D+S +R V +D Y+PP++ + WD GL + Sbjct: 657 RAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDL 716 Query: 712 DVPVIDWAAEE-GVDDEEITERLEKASDEFMASKAAHFGPETMRMIEKQVLLQTIDKKWR 770 D+P+ +W +E + +E + ER+ S E K G E MR EK V+LQT+D W+ Sbjct: 717 DLPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWK 776 Query: 771 EHLLTLEHLRSVVSFRGYAQRDPLNEYKNEAFQLFEGMLDSLREDVTQQLGLVRPLSEEE 830 EHL +++LR + RGYAQ+DP EYK E+F +F ML+SL+ +V L V+ EE Sbjct: 777 EHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEE 836 Query: 831 Q----QQALAMMREREQSSMPQDKASELATAPAEGFVENDPNTWGNPGRNEECPCGSGKK 886 QQ Q + + A A A GRN+ CPCGSGKK Sbjct: 837 VEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQT----GERKVGRNDPCPCGSGKK 892 Query: 887 FKHCHGRV 894 +K CHGR+ Sbjct: 893 YKQCHGRL 900
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 64.9 bits (158), Expect = 8e-13 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 24/185 (12%) Query: 331 ITIMGHVDHGKTSLLDAIRDAKVVAGEAG------------------GITQHIGAYQVTT 372 I ++ HVD GKT+L +++ E G GIT G Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 373 ESGAVLSFLDTPGHAAFTSMRSRGAQVTDIVVLVVAADDAVMPQTIEAINHAKAAKVPMI 432 E ++ +DTPGH F + R V D +L+++A D V QT + + +P I Sbjct: 66 E-NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI 124 Query: 433 VAINKIDKPAANPTKVRTDL---LQHEVVVEAMSGDVQDVEVSAITGQGLDELLDAIALQ 489 INKID+ + + V D+ L E+V++ ++ V ++ I Sbjct: 125 FFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCV--TNFTESEQWDTVIEGN 182 Query: 490 AEILE 494 ++LE Sbjct: 183 DDLLE 187
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 27.9 bits (62), Expect = 0.004 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 5/31 (16%) Query: 20 RLLDSKGVDYTEYNILTD-----PKLKPEMI 45 R K +D+ Y +L D P LKP+++ Sbjct: 447 RYFSDKSIDFHSYYLLQDNVYQIPDLKPDLV 477
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 3e-19 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 5/130 (3%) Query: 18 VLVVDDSRLQRSILRASLKKWGYRVAEVSSGDEALDFCENKQPDLVISDWMMPGMDGIEF 77 +LV DD R++L +L + GY V S+ + DLV++D +MP + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 78 CRRFKALDTERFGYFILLTSKSDKSEIAQGLDAGADDFLTKPVSSAELRARLVAGERILN 137 R K + +++++++ + + GA D+L KP EL + R L Sbjct: 66 LPRIKKARPDL--PVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII---GRALA 120 Query: 138 MERELTRKNE 147 + K E Sbjct: 121 EPKRRPSKLE 130
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 110 bits (277), Expect = 1e-35 Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 1/88 (1%) Query: 3 RSELVQKIAEENPHLFQRDVERIVNTIFEEIIDAMAAGDRVELRGFGAFSVKQRDARTGR 62 + +L+ K+AE L ++D V+ +F + +A G++V+L GFG F V++R AR GR Sbjct: 4 KQDLIAKVAEAT-ELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 63 NPRTGEAVEVEEKHVPFFKTGKLLRDRL 90 NP+TGE ++++ VP FK GK L+D + Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 27.5 bits (61), Expect = 0.008 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 12/60 (20%) Query: 43 GFSIELPLFVVIFIGILAGL----LMGFVWEWLREHKHRAEAARHRGEVKKLEGELKRIK 98 GF++ + V++ IG+LA L LMG +K +A+ + ++ LE L K Sbjct: 9 GFTLLEIMVVIVIIGVLASLVVPNLMG--------NKEKADKQKAVSDIVALENALDMYK 60
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.3 bits (68), Expect = 0.004 Identities = 29/115 (25%), Positives = 37/115 (32%), Gaps = 10/115 (8%) Query: 78 YADDNDGHDSSDSHDDNDSHDSNDSHDDNDGHDSNDSHDDNDGHDSNDSHDSSDDH---- 133 + D G D D + ND +D ND + D G D ND + Sbjct: 736 FTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLN 795 Query: 134 -GRGDGESDGHD----SDSHDGHGGDSDSDGHGGDSDSDGHGGDSDSDGDSDGDD 183 G GD E + G G+ G G DG GD G G+D Sbjct: 796 GGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKG-GYGND 849 Score = 28.8 bits (64), Expect = 0.015 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 9/81 (11%) Query: 94 NDSHDSNDSHDDNDGHDSNDSHDDNDGHDS--NDSHDSSDDHGRGDGESDGHDSDSHDGH 151 D + D G D +D + NDG+D D + + G GD + G G Sbjct: 728 ADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYG-------GD 780 Query: 152 GGDSDSDGHGGDSDSDGHGGD 172 G D G + + G G D Sbjct: 781 GNDKLIGVAGNNYLNGGDGDD 801
>cloacin#Cloacin signature. Length = 551 Score = 32.8 bits (74), Expect = 4e-04 Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 6/74 (8%) Query: 87 GHGGLLTLPSGDGGEDGNDVGGDEGGDDGDG------DDGGDHGDDGDDGGDDGGDDGGH 140 GH SG+ +G G DG G GG G GG G +GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 141 GGDDGDGDGDGDGG 154 G+ G G G G Sbjct: 68 NGNSGGGSGTGGNL 81 Score = 27.0 bits (59), Expect = 0.039 Identities = 14/36 (38%), Positives = 16/36 (44%) Query: 112 GDDGDGDDGGDHGDDGDDGGDDGGDDGGHGGDDGDG 147 G DG G + G H G+ G G G G DG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG 38
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 63.8 bits (155), Expect = 6e-12 Identities = 63/277 (22%), Positives = 97/277 (35%), Gaps = 86/277 (31%) Query: 1315 DRFILGGGNDTLDAGDGFDMVRYDRSGVGPITADLGAGTVTGTW---------------- 1358 D+ L G+ + AG G D+V YD++ G +T D T G + Sbjct: 621 DKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKVLQEV 680 Query: 1359 ---------------------------DGVAFSDMLMNIEEIRGSRDG--------ADSL 1383 + +D L ++EE+ G+ D Sbjct: 681 VKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIF 740 Query: 1384 TAANTGSVLRAYEGDDTLTGGAGNDYLRGGDGGDTFVVGHGGYDVIADFNISEGDMIVDV 1443 A+ ++ +G+D L G GND L GG+G D + G G D + G + Sbjct: 741 HGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDD-QLYGGDGNDKLI------GVAGNNY 793 Query: 1444 LADSRGEEQLVLTAVGGSTEVSIGGTTVLLENVFIEDVEDYLAGLGGILGTAEDDTLVGT 1503 L G+++ + + V GG +D L G+ Sbjct: 794 LNGGDGDDEFQVQGNSLAKNVLFGG--------------------------KGNDKLYGS 827 Query: 1504 EGDDTLNGLGGDDVLTGGAGADEFV--VGLGNDTITD 1538 EG D L+G GDD+L GG G D + G G+ I D Sbjct: 828 EGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDD 864 Score = 60.4 bits (146), Expect = 7e-11 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 7/152 (4%) Query: 797 DDLFAQFTNTVVGSADGDDLDFDDISPNNDSVDGGAGDDNLSFGAGDDSYQGGEGDDYIF 856 D F + ADGDDL + + ND + G G+D LS G GDD GG+G+D + Sbjct: 729 DKFFGSKFTDIFHGADGDDLI--EGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLI 786 Query: 857 DSLGSNTIDGGAGDYDQVAYWRAKAGVTVDLNAGTATKGDGSVDTITNVEMVRGSMFADS 916 G+N ++GG GD D+ G ++ N KG+ + +++ G D Sbjct: 787 GVAGNNYLNGGDGD-DEFQV----QGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDL 841 Query: 917 IQLADGDGPSRARGLDGNDTLMGGSGDNDRVS 948 ++ G+ R G+ + G D++S Sbjct: 842 LKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLS 873 Score = 51.1 bits (122), Expect = 4e-08 Identities = 77/306 (25%), Positives = 107/306 (34%), Gaps = 46/306 (15%) Query: 828 VDGGAGDDNLSFGAGDDSYQGGEGDDYIFDS---LGSNTIDG----GAGDY--------- 871 G GDD + AG + G+G D ++ G TIDG AG+Y Sbjct: 614 SHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGD 673 Query: 872 -----DQVAYWRAKAGVTVDL-------NAGTATKGDGSVDTITNVEMVRGSMFADSIQ- 918 + V G + K D + +VE + G+ AD Sbjct: 674 VKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFG 733 Query: 919 ------LADGDGPSRARGLDGNDTLMGGSGDNDRVSYDRDAQ-YGGNAGVTVDLQAGTAT 971 DG G DGND L G G++ + D Q YGG+ + AG Sbjct: 734 SKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNY 793 Query: 972 -DGFGATDMLSGFEEVQGTEFADSLTAADSGSD-LRAGGGDDTVVSGAGDDTMVLGAGAD 1029 +G D +VQG A ++ G+D L G D + G GDD + G G D Sbjct: 794 LNGGDGDDEF----QVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGND 849 Query: 1030 VVRYSG--GLDWVEDFDVSEDTLEFVGGAASSVLNVSVGEYNNGTGPYDQGAFLDFGDGN 1087 + RY G ++D ED L V G N+ +G L G N Sbjct: 850 IYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREG--NDLIMYKGEGNVLSIGHKN 907 Query: 1088 GLTLNG 1093 G+T Sbjct: 908 GITFRN 913 Score = 50.0 bits (119), Expect = 1e-07 Identities = 68/322 (21%), Positives = 105/322 (32%), Gaps = 56/322 (17%) Query: 848 GGEGDDYIFDSLGSNTIDGGAGDYDQVAYWRAKAG-VTVDLNAGTATKGDGSVDTITNVE 906 G+GDD +F S GS I G G +D V Y + G +T+D GT G+ + Sbjct: 616 LGDGDDKVFLSAGSANIYAGKG-HDVVYYDKTDTGYLTID---GTKATEAGNYTVTRVLG 671 Query: 907 MVRGSMFADSIQLADGDGPSRARGLDGNDTLMGGSGDNDRVSYDRDAQYGGNAGVTVD-- 964 GD + + +G + + G D Sbjct: 672 ---------------GDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNL 716 Query: 965 -----LQAGTATDGFGATDMLSGF------EEVQGTEFADSLTAADSGSDLRAGGGDDTV 1013 L T D F + F + ++G + D L L G GDD + Sbjct: 717 YSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQL 776 Query: 1014 VSGAGDDTMVLGAGADVVRYSGGLDWVEDFDVSEDTLEFVGGAASSVLNVSVGEYNNGTG 1073 G G+D ++ AG + + G D EF S NV G N Sbjct: 777 YGGDGNDKLIGVAGNNYLNGGDGDD------------EFQVQGNSLAKNVLFGGKGNDKL 824 Query: 1074 PYDQGAFLDFGDGNGLTLNGVSGAEAQALLLGLDLEGVSLTGTTGNDTLEGTLGDDTLNA 1133 +GA L G L G G + L G G+ ++ G + + Sbjct: 825 YGSEGADLLDGGEGDDLLKGGYGNDIYRYLSG-----------YGHHIIDDDGGKEDKLS 873 Query: 1134 LSNDDGNDRLVASLGDDQLVFS 1155 L++ D D G+D +++ Sbjct: 874 LADIDFRDVAFKREGNDLIMYK 895 Score = 46.5 bits (110), Expect = 1e-06 Identities = 34/140 (24%), Positives = 47/140 (33%), Gaps = 37/140 (26%) Query: 1293 GAGNIELETSSAADSVMGSAFGDRFILGGGNDTLDAGDGFDMVRYDRSGVGPITADLGAG 1352 GN L + D + G D+ I GN+ L+ GDG D + + + G G Sbjct: 761 DKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKG 820 Query: 1353 TVTGTWDGVAFSDMLMNIEEIRGSRDGADSLTAANTGSVLRAYEGDDTLTGGAGNDYLRG 1412 L EG D L GG G+D L+G Sbjct: 821 NDK------------------------------------LYGSEGADLLDGGEGDDLLKG 844 Query: 1413 GDGGDTFVVGHG-GYDVIAD 1431 G G D + G G+ +I D Sbjct: 845 GYGNDIYRYLSGYGHHIIDD 864 Score = 43.0 bits (101), Expect = 1e-05 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 10/105 (9%) Query: 1493 GTAEDDTLVGTEGDDTLNGLGGDDVLTGGAGADEFVVGLGNDTITDFNPE------EGDD 1546 G DD + G +G+D L G G+D L+GG G D+ G GND + +GDD Sbjct: 742 GADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDD 801 Query: 1547 VYTAEDIDIDFDT----ALTDTTYDGSAAARVAFGGGNSVTLAGY 1587 + + + + D Y A + G G+ + GY Sbjct: 802 EFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGY 846 Score = 41.9 bits (98), Expect = 3e-05 Identities = 43/156 (27%), Positives = 56/156 (35%), Gaps = 43/156 (27%) Query: 1298 ELETSSAADSVMGSAFGDRFILGGGNDTLDAGDGFDMVRYDRSGVGPITADLGAGTVTGT 1357 EL ++ AD GS F D F G+D ++ DG D + D Sbjct: 721 ELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGD------------------- 761 Query: 1358 WDGVAFSDMLMNIEEIRGSRDGADSLTAANTGSVLRAYEGDDTLTGGAGNDYLRGGDGGD 1417 G D+L+ N L +G+D L G AGN+YL GGDG D Sbjct: 762 --------------------KGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDD 801 Query: 1418 TFVVGHGGYDVIADFNISEGDMIVDVLADSRGEEQL 1453 F V N+ G D L S G + L Sbjct: 802 EFQVQGNSL----AKNVLFGGKGNDKLYGSEGADLL 833 Score = 40.3 bits (94), Expect = 1e-04 Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 7/124 (5%) Query: 822 SPNNDSVDGGAGDDNLSFGAGDDSYQGGEGDDYIFDSLGSNTIDGGAGDYDQVAYWRAKA 881 + D G D GDD +G +G+D ++ G++T+ GG GD DQ+ Sbjct: 725 TTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGD-DQLYGGDGND 783 Query: 882 GVTVDLNAGTATKGDGSVDTITNVEMVRGSMFADSIQLADGDGPSRARGLDGNDTLMGGS 941 + GDG + E L G G + G +G D L GG Sbjct: 784 KLIGVAGNNYLNGGDG------DDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGE 837 Query: 942 GDND 945 GD+ Sbjct: 838 GDDL 841 Score = 33.8 bits (77), Expect = 0.008 Identities = 61/218 (27%), Positives = 76/218 (34%), Gaps = 32/218 (14%) Query: 1007 GGGDDTVVSGAGDDTMVLGAGADVVRYSGG------LDWVEDFDVSEDTLEFVGGAASSV 1060 G GDD V AG + G G DVV Y +D + + T+ V G V Sbjct: 617 GDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKV 676 Query: 1061 LN-------VSVG------EYNNGTGPYDQGAFLDFGDGNGLTLNGVS---GAEAQALLL 1104 L VSVG +Y + + G L D L V G Sbjct: 677 LQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETD----NLYSVEELIGTTRADKFF 732 Query: 1105 GLDLEGVSLTGTTGNDTLEGTLGDDTLNALSNDDGNDRLVASLGDDQLVFSDGTATTYAE 1164 G + G G+D +EG G+D L D GND L GDDQL DG Sbjct: 733 GSKFTDI-FHGADGDDLIEGNDGNDRL---YGDKGNDTLSGGNGDDQLYGGDGNDKLIGV 788 Query: 1165 IDYSNLVGTGITATVDYQANT--GSVSKGALGTDTLVG 1200 + L G Q N+ +V G G D L G Sbjct: 789 AGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYG 826 Score = 32.2 bits (73), Expect = 0.025 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 11/134 (8%) Query: 1260 KGDDAVIANLGTGAVDIGGGAGSVQINVTGAADGAGNIELETSSAADSVMGSAFGDRFIL 1319 G+D +I G ++ GG G + V G + L D + GS D Sbjct: 780 DGNDKLIGVAGNNYLN--GGDGDDEFQVQG--NSLAKNVLFGGKGNDKLYGSEGADLLDG 835 Query: 1320 GGGNDTLDAGDGFDMVRYDRSGVGPITADLGAGTVTGTWDGVAFSDMLMNIEEIRGSRDG 1379 G G+D L G G D+ RY I D G D ++ +D ++ ++ R+G Sbjct: 836 GEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKE-----DKLSLAD--IDFRDVAFKREG 888 Query: 1380 ADSLTAANTGSVLR 1393 D + G+VL Sbjct: 889 NDLIMYKGEGNVLS 902
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 28.2 bits (62), Expect = 0.049 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 4/106 (3%) Query: 114 SALMRDLDHALRMIEAVTAAVTLPVTLKTRLGWDDDSLNAAELAQRAESAGVKRLVIHGR 173 A MR LD + + A V L + L ++L AA+ + A +A R Sbjct: 171 EAYMRFLDREMEGLTA-AYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAE 229 Query: 174 TRCQFYKGRADWAAIRAVKDAVNIPVFANGDICSASDARNALEASG 219 + + + AAIRA A + ANG + + + R ++ + Sbjct: 230 AKRKAEEQARQQAAIRA---ANTYAMPANGSVVATAAGRGLIQVAQ 272
>PF06580#Sensor histidine kinase Length = 349 Score = 34.8 bits (80), Expect = 4e-04 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 29/115 (25%) Query: 235 LLQVLL-NLLKNAAEAAGAGGVIRLRTSYEHGFRLRTEDGLGRPLPLQIEVIDNGRGIAP 293 L+Q L+ N +K+ GG I L+ + ++G + +EV + G Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGT-------------VTLEVENTGSLALK 305 Query: 294 DMIDDIFEPFVSGRENGTGLGLALTAKIMAA---HEGWVSVRSEPGATVFRLSLP 345 + + TG GL + + E + + + G + +P Sbjct: 306 NT------------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 387 bits (995), Expect = e-133 Identities = 207/482 (42%), Positives = 281/482 (58%), Gaps = 35/482 (7%) Query: 3 GTVLVADDDRTIRTVLTQALTRAGCKVQATSSLTTLMRWVGEGLGDVVITDVMMPDGNGL 62 T+LVADDD IRTVL QAL+RAG V+ TS+ TL RW+ G GD+V+TDV+MPD N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EMLPKIAADRPDLPVIVISAQNTIMTTIKAAEAEAFDYLPKPFDLPDLMKRTAKALEVSR 122 ++LP+I RPDLPV+V+SAQNT MT IKA+E A+DYLPKPFDL +L+ +AL + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 123 KRGGGRAMNVSPEPNELPLVGRSVPMQEVYKLVARVLNANLPVIVTGESGAGKSLVARVI 182 +R + + +PLVGRS MQE+Y+++AR++ +L +++TGESG GK LVAR + Sbjct: 124 RR--PSKLEDDSQDG-MPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 183 HDMSDRRTQPFVV---------LTESA-FGK-----SGALADV---LAEAGQGTVLFEEI 224 HD RR PFV L ES FG +GA +A GT+ +EI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 225 SDLPDAYQMKAVHLM----------DAAGRNGPRFLATSQMELSQAMAQGKLRNDLFYRL 274 D+P Q + + ++ R+ R +A + +L Q++ QG R DL+YRL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 275 DGAVLSLPSLRARVEDIGLLAEHFLSQSRATG-AAHSFAPAALEALRHYSWPGNVRQLAN 333 + L LP LR R EDI L HF+ Q+ G F ALE ++ + WPGNVR+L N Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 334 TVERLALTARSGEISETEV---GSALAAQPALAPSLGSLSDEKLAESVARHVKRYFDLHG 390 V RL I+ + + + + ++++V ++++YF G Sbjct: 361 LVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFG 420 Query: 391 DALPPPGLYARILREMELPLIEIALDATGGNQAKCADLLGLNRNTLRKKITDLDISVTRR 450 DALPP GLY R+L EME PLI AL AT GNQ K ADLLGLNRNTLRKKI +L +SV R Sbjct: 421 DALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRS 480 Query: 451 RK 452 + Sbjct: 481 SR 482
>PF06580#Sensor histidine kinase Length = 349 Score = 31.4 bits (71), Expect = 0.015 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 22/107 (20%) Query: 654 LIKNAGE-AIETRREELGGDIVPQIKISARRVDNDAEISISDNGIGLPEDRAKLFEPYVT 712 L++N + I + GG +I + + + + + + G ++ Sbjct: 263 LVENGIKHGIAQLPQ--GG----KILLKGTKDNGTVTLEVENTGSLALKNTK-------- 308 Query: 713 TRDKGTGLGLPIVKKIIEEHGGSLKLEDAALFEGESHHGAMALIRLP 759 + TG GL V++ ++ G +A + E A++ +P Sbjct: 309 ---ESTGTGLQNVRERLQMLYG----TEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 406 bits (1044), Expect = e-140 Identities = 146/475 (30%), Positives = 254/475 (53%), Gaps = 32/475 (6%) Query: 4 ILIVDDERDIRELISDILEDEGFTTRLAGNSDDAMKEVHEKRPGLLILDIWLKDSKMDGI 63 IL+ DD+ IR +++ L G+ R+ N+ + + L++ D + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTD--VVMPDENAF 63 Query: 64 DILKAVKTDYPEVPVVIISGHGNIEIAVAAIRQGAYDFIEKPFNIDQLLVVIRRAMETSR 123 D+L +K P++PV+++S A+ A +GAYD++ KPF++ +L+ +I RA+ + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 124 LRRENIELRRKETVPSEMIGSSAAFRAMQGQLDKVTKSNGRVMLSGPSGSGKESAARYIH 183 R +E ++ ++G SAA + + L ++ +++ +M++G SG+GKE AR +H Sbjct: 124 RRPSKLEDDSQD--GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181 Query: 184 SNSNRAAAPFVTVGCAAIEPDQMENVLFGRESPE----KGVEMGLLEEANGGIIYFDEIA 239 R PFV + AAI D +E+ LFG E + G E+A GG ++ DEI Sbjct: 182 DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 240 DMPLGTQSKILRVLVDQQFLRVGGANKVKVDLRVVSSTSKNLESEVSAGRFREELYHRLN 299 DMP+ Q+++LRVL ++ VGG ++ D+R+V++T+K+L+ ++ G FRE+LY+RLN Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301 Query: 300 VVPIAVPSLEDRREDIPLLAQHFIERLNKDQGLAQRVVSEEALALLQTMTWPGNLRQLKN 359 VVP+ +P L DR EDIP L +HF+++ K+ GL + +EAL L++ WPGN+R+L+N Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 360 MIERLLILGDSN------------GDISAKELSAGEALQGN-------DDSGKIVLPSVM 400 ++ RL L + +I + A G+ +++ + S Sbjct: 361 LVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFG 420 Query: 401 ATLP----LREAREEFEREYLLTQINRFGGNISRTAQFVGMERSALHRKLKSLGV 451 LP E E +L + GN + A +G+ R+ L +K++ LGV Sbjct: 421 DALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 30.9 bits (70), Expect = 0.009 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 8/89 (8%) Query: 1 MKVIICG-AGQVGWQIARHLSGEANDVTVIDSNPDL--VRRAMDTLDVQGFAGFASYPDI 57 MK ++ G AG +G+ +++ L + V ID+ D V L++ GF + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFH--- 57 Query: 58 LDKAGARDADMVIAATHSDEVNMVICQVA 86 K D + + S V Sbjct: 58 --KIDLADREGMTDLFASGHFERVFISPH 84
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.8 bits (72), Expect = 7e-04 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Query: 81 RALLLGPVAVHPTRQGEGVGGLLIRQSLAKAGETGWARVML------VGDAPYYARFGFT 134 L+ +AV + +GVG L+ +++ A E + +ML + +YA+ F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 135 PLAGVE 140 + V+ Sbjct: 148 -IGAVD 152
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.003 Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 8/170 (4%) Query: 219 VGPVYGQEVGLEVTQIATF---LAAFVLGGALAQYPIGWLADKYDRRWVLIWLSLAAILS 275 V P +++ A + LA + L +G L+D++ RR VL+ ++ + Sbjct: 27 VLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLL---VSLAGA 83 Query: 276 CASTALLQDLTTTGILLNAAFFGLTTFPIYSVAAAHAHDFATSEERVELSAALMFWFATG 335 A++ +L T +VA A+ D +ER + F G Sbjct: 84 AVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFG 143 Query: 336 AIAAPLAASYLMEAFGPPALFIMIAVGHAGLAVFGLARMRSRSSPTERTP 385 +A P+ + F P A F A + + G + S ER P Sbjct: 144 MVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLP-ESHKGERRP 191
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 29.9 bits (67), Expect = 0.008 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 5/79 (6%) Query: 48 EEIYLMKPDLVLAGTYTARASVEMLERLGLRVVRFAPA---NSLADVPLRLREMGAVLGR 104 E + MKP ++ + S EML R+ F + LA L EM +L Sbjct: 90 ELLTEMKPSFMV-WSAGYGPSPEMLARIA-PGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 105 EARAAELVAAFEAGLARLK 123 ++ A +A +E + +K Sbjct: 148 QSAAETHLAQYEDFIRSMK 166
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (267), Expect = 4e-30 Identities = 72/254 (28%), Positives = 108/254 (42%), Gaps = 13/254 (5%) Query: 11 LTGKRALVTGASSGIGQGCAVALAEAGAHVVCSARGMGRLQSTVDEMAGQGFSAEALSLD 70 + GK A +TGA+ GIG+ A LA GAH+ +L+ V + + AEA D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 71 ISDLDAIKAG----LTEQAPFDIIVNAAGYAKHTPATETEPSDFDAVMNINLRGAYFLSA 126 + D AI E P DI+VN AG + +++A ++N G + S Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 127 WAAKAMQDAGIEGSIIHISSQMGHVGGIDRAVYCASKFGLEGMVKAMAIEWGKSRIRINT 186 +K M D GSI+ + S V A Y +SK K + +E + IR N Sbjct: 126 SVSKYMMDRR-SGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 187 ICPTFIRTPLTEPTFAD----PARVAWIEEKIKLG----RTGVVEDIMGAVLYLASPASS 238 + P T + +AD + E K G + DI AVL+L S + Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 239 LVTGSSMLIDGGWT 252 +T ++ +DGG T Sbjct: 245 HITMHNLCVDGGAT 258
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 30.8 bits (69), Expect = 0.011 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 6/101 (5%) Query: 238 PADLVASALGGTGLAPIGIATL----VGVPAYLNGYAALPLVGGLMEQGMAPGAGLAFLV 293 P ++ A+A+GGT L G A+L GV AYLNG +VGG G + + A + Sbjct: 1022 PTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEA-IVGGFGSYGYSSFSNQANSL 1080 Query: 294 AGGVSSLPAAVAVWALVKRQVFVLYIALALVGSFASGLLFQ 334 G ++ V + F A +GS S L F+ Sbjct: 1081 NSGANNTNFGVYSRIFANQHEFDFE-AQGALGSDQSSLNFK 1120
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 86.6 bits (214), Expect = 1e-22 Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 16/224 (7%) Query: 3 VAGKTYWLVGASEGLGEALALKLAAEGAHLVLSARSEDKL----AALAAKMPNAQIAPLD 58 + GK ++ GA++G+GEA+A LA++GAH+ + +KL ++L A+ +A+ P D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 59 VTDKPSVVAA----AASVGPLDGVIYLAGYYDPMKAQSWNAEAVEQMCAVNFTGALHILG 114 V D ++ +GP+D ++ +AG P S + E E +VN TG + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 115 QTVPAFVDKDAGHIVLIGSLAGYRGLPGSIGYGASKAALMHMGETLYADLHKTGVKVQNI 174 +D+ +G IV +GS Y +SKAA + + L +L + ++ + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 175 NPGFIKTRLTAKNEFNMPQLMTPEEAADHVIRAMKSNRFETAFP 218 +PG +T + L E A+ VI+ F+T P Sbjct: 186 SPGSTETDMQW-------SLWADENGAEQVIKG-SLETFKTGIP 221
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 37.9 bits (88), Expect = 6e-05 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 2/103 (1%) Query: 255 LAAALSVPLWSALVRRHGARRILPLAMTLAIVSFMGAALLPEGAALAFALICLASGAALG 314 ++ + + LV R G +L + +T VSF+ A+ L E + +I + L Sbjct: 304 MSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLS 363 Query: 315 ADMVILPVLFSTALARAGLSAGAAFGLWSFAGKLSLALAAALA 357 ++ + S++L + AGA L +F LS A+ Sbjct: 364 FTKTVISTIVSSSLKQQ--EAGAGMSLLNFTSFLSEGTGIAIV 404
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.0 bits (83), Expect = 3e-04 Identities = 30/163 (18%), Positives = 48/163 (29%), Gaps = 15/163 (9%) Query: 187 AELRSARRNSWLVVG-SAFLASGLLLAGIVQAGGRTIQEQRQRLQTQLAQSEHLAEQNIA 245 RS N + + V I+EQ Q Q Q E N+ Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK----ELNLD 210 Query: 246 LRRKAITANLRATAQLEQTIRHVGSDLHDGPAQHLSLAALRLDSAFDKNA---DPNARSE 302 +R L + E R S L D ++L A K+A N E Sbjct: 211 KKRAERLTVLARINRYENLSRVEKSRLDD-------FSSLLHKQAIAKHAVLEQENKYVE 263 Query: 303 IRASIDRALEEIRAISRGLALPELEQMDLASLVRAAISEREVQ 345 + ++ I + + E + L + I ++ Q Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQ 306
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 52.9 bits (127), Expect = 2e-10 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 3/116 (2%) Query: 2 AIRLILADDHPIFRDGLVQSITETGEFEVLGVGESAEEAVALAAQHSPDIALLDLSMPG- 60 +++ADD R L Q+++ G ++V +A A D+ + D+ MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAG-YDVRITS-NAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 NGITAAKRIIEGGFAKHVAMLTVSEDGADVTKALQVGAIGYVLKGVSADDLRRILK 116 N RI + V +++ KA + GA Y+ K +L I+ Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.4 bits (63), Expect = 0.027 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%) Query: 55 GGDDGDGDDGDD---GDDGDDDSDNDDGD 80 G D +G+DG+D GD G+D +GD Sbjct: 745 GDDLIEGNDGNDRLYGDKGNDTLSGGNGD 773
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 57.3 bits (138), Expect = 4e-11 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 31/163 (19%) Query: 269 SPPKTTTSSGTGFVVSAQGHILTNDHVVDSCSRYTV---------------DGK-QAERI 312 T T +G VV + +LTN HVVD+ +G AE+I Sbjct: 95 VEAPTGTFIASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQI 153 Query: 313 AGSP-EFDLALLK-------APIKKDAAVAVFSA-APPRLNSDVTVVGYPYGGALSGLNV 363 E DLA++K I + A S A ++N ++TV GYP ++ + Sbjct: 154 TKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWE 213 Query: 364 TRGSVSSLKGLGGDATRLQITAPVQQGNSGGPLVAADGEIVGV 406 ++G ++ LKG +Q GNSG P+ E++G+ Sbjct: 214 SKGKITYLKGEA-----MQYDLSTTGGNSGSPVFNEKNEVIGI 251
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 37.2 bits (86), Expect = 1e-04 Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 400 ELTAMIETQRAYTSNAKVIQTVDEMLQETANIK 432 E + Q+ Y +NA+V+QT + + NI+ Sbjct: 514 EYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 36.1 bits (83), Expect = 3e-04 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 13/74 (17%) Query: 4 SSSLNAGVAGLTANATRLATISDNIANSATYGYKRMEADFHSMVISST-------GGTYS 56 SS +N ++GL A L T S+NI++ GY R I + GG Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTR------QTTIMAQANSTLGAGGWVG 54 Query: 57 AGGVRTTTQRLIDE 70 G + QR D Sbjct: 55 NGVYVSGVQREYDA 68
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 88.1 bits (218), Expect = 1e-20 Identities = 107/551 (19%), Positives = 199/551 (36%), Gaps = 85/551 (15%) Query: 7 LSNAISGLTAATRSAQVVSSNMANSMTEGYGRRDVELQSQDTR-------GGGVSVVATV 59 ++NA+SGL AA + S+N+++ GY R+ + ++ G GV V Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGVQ 63 Query: 60 RHREPALVAEMRDANADRSAQSSVAGFHSKLEQLVGTPDSASSLTSRLASFEASLVSAAS 119 R + + ++R A S ++ SK++ ++ S SSL +++ F SL + S Sbjct: 64 REYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLS--TSTSSLATQMQDFFTSLQTLVS 121 Query: 120 RPDLSGRLDQVVREANSITRSLNTASQGIQDMRVSADRSIQTAVSALNTKLVQVQELNVQ 179 + ++ ++ + T Q ++D + +I +V +N Q+ LN Q Sbjct: 122 NAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLNDQ 181 Query: 180 IAGGSAAKRDVSA--LFDHREALIGEIAELVPVKEMRRPNQGVALYTQGGALLLDGNAAE 237 I+ + S L D R+ L+ E+ ++V V+ + + G L+ G+ A Sbjct: 182 ISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTAR 241 Query: 238 LAFTNANTIVPHMTQAGGLLSGITINGVDVSVDPEHGPLRGGQLGAFFEIRDDLAVGAQA 297 ++ P T ++G +++ L G LG R + Sbjct: 242 QLAAVPSSADPSRTTVA------YVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRN 295 Query: 298 ELDAVARDLSER---MQDAGLDPTTPTGAAGLFTDAGVYVEAANEVGLASR----ISVNA 350 L +A +E AG D G ++ G + +A Sbjct: 296 TLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASA 355 Query: 351 VVDPDRG----GESWRLR--------------------DGLGAAVRGP--VGNAELLQSF 384 V+ D W++ DGL G V ++ L+ Sbjct: 356 VLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPV 415 Query: 385 SSALSSTRSYASGGFAGQIAAAS----------DLASLVTEKFGSQRLGAEQKL------ 428 S A+ + + +IA AS + +L+ + S+ +G + Sbjct: 416 SDAIVNMDVLITD--EAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYAS 473 Query: 429 -------------TFAAVRATEAEQFLME----DGVDTDRELQRLMLIEQAYAANARVLQ 471 T +A + Q + GV+ D E L +Q Y ANA+VLQ Sbjct: 474 LVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQ 533 Query: 472 TVDDMMNALMG 482 T + + +AL+ Sbjct: 534 TANAIFDALIN 544
>FLAGELLIN#Flagellin signature. Length = 507 Score = 29.6 bits (66), Expect = 0.021 Identities = 29/189 (15%), Positives = 55/189 (29%), Gaps = 9/189 (4%) Query: 124 VATLNTSVAGRALFSGSATDSAALASADDILADLRSALAGQTTLAGVEAVMDGWFGASGG 183 + ++ + +G+A AA + + S + GQ T Sbjct: 303 INGEKVTLTVADITAGAANVDAATLQSSKNVYT--SVVNGQFTFDDKTKNESAKLSDLEA 360 Query: 184 FEAVGYTGGLSDMSAFHLGDGERIDLKIKGDDEVFRATLKSAAMAALSYDPALALSNGTR 243 AV ++ A + + GD A + Sbjct: 361 NNAVKGESKITVNGAEYTANA-------AGDKVTLAGKTMFIDKTASGVSTLINEDAAAA 413 Query: 244 VEMLGRAGELSLGAVDSLTTARATLGYAEARIEEASVRLTAQNTSLEIARSELISADPYD 303 + A+ + R++LG + R + A L T+L ARS + AD Sbjct: 414 KKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYAT 473 Query: 304 TIVKLEETQ 312 + + + Q Sbjct: 474 EVSNMSKAQ 482
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 356 bits (915), Expect = e-124 Identities = 163/354 (46%), Positives = 223/354 (62%), Gaps = 8/354 (2%) Query: 15 AALASDVRIKDLVEFDGVRGNDLIGYGLVVGLNGTGDGIRNAPFTEEIMSNILERLGVNV 74 A A RIKD+ R N LIGYGLVVGL GTGD +R++PFTE+ M +L+ LG+ Sbjct: 23 PAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITT 82 Query: 75 SGEQYRPKNVAAVFVTAELPAFARAGGTIDVNVSAIGDAKSLMGGTLIMTPLNAADGQIY 134 G Q KN+AAV VTA LP FA G +DV VS++GDA SL GG LIMT L+ ADGQIY Sbjct: 83 QGGQSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIY 142 Query: 135 AVAQGTIIAGGAAAEGEAGGVVKGVPTAGVIPSGARVEREIEFELSSLTTLRLALREADF 194 AVAQG +I G +A+G+A + +GV T+ +P+GA +ERE+ + L L LR DF Sbjct: 143 AVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDF 202 Query: 195 TTAGRIEKAINR----NFGKRVASMLDSGTVQISVEATGRRSTAHAIGEIENILVRPERR 250 +TA R+ +N +G +A DS + V+ + EIEN+ V + Sbjct: 203 STAVRVADVVNAFARARYGDPIAEPRDSQEIA--VQKPRVADLTRLMAEIENLTVETDTP 260 Query: 251 ARVVVDQRSGTIVMGEDVRISRVAVSQGGLTLRIQEAPLAIQPNPFSEGETVVVPRTNAA 310 A+VV+++R+GTIV+G DVRISRVAVS G LT+++ E+P IQP PFS G+T V P+T+ Sbjct: 261 AKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIM 320 Query: 311 IEEEPGISLAEVPDGTTLSEVIAGLNALGVKPRDMIDILKSIKAAGALHAEFVV 364 +E + +G L ++AGLN++G+K +I IL+ IK+AGAL AE V+ Sbjct: 321 AMQEGSKVA--IVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQAELVL 372
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.7 bits (90), Expect = 3e-05 Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 24/177 (13%) Query: 1 MADADNLLTEIEALEGRLTAAKAEITRRFIGQ----ERVVDLTLSALLCGGHGLLIGLPG 56 + L E + +L + +G+ + + + + ++ G G Sbjct: 112 IGIIGRALAEPKRRPSKLEDDSQDG-MPLVGRSAAMQEIYRVLARLMQTDLTLMITGESG 170 Query: 57 LGKT---RLIETLSTVMGLDGKRVQFTPDLMPADILGSEVLE------TGADGSRAFKFI 107 GK R + +G V +P D++ SE+ TGA +F Sbjct: 171 TGKELVARALHDYG--KRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFE 228 Query: 108 E---GPIFCQLLMADEINRASPRTQSALLQAMQERQVSVSGQTRDLAKPFHVLATQN 161 + G +F DEI Q+ LL+ +Q+ + + G + ++A N Sbjct: 229 QAEGGTLFL-----DEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN 280
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 212 bits (541), Expect = 3e-71 Identities = 100/245 (40%), Positives = 143/245 (58%), Gaps = 1/245 (0%) Query: 1 MLLRISAILTLAALFVVAAGPLLAQEFSVSLGDGASLSGRSVQLILLITVLSIAPGLAIM 60 M +S L L A L S L G VQ ++ IT L+ P + +M Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 61 VTCFPFLVTVLSILRQAIGLQQSPPNMLLVSLAMFLTYFIMEPVFIQAWTDGIEPLTREE 120 +T F ++ V +LR A+G +PPN +L+ LA+FLT+FIM PV + + D +P + E+ Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 121 ITMAEAFPKVADPFRTFMLGRIDPETFASIASLRPEIASLSPSADAPLSVLVPSFMLSEV 180 I+M EA K A P R FML + A L P P+ +L+P+++ SE+ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGP-EAVPMRILLPAYVTSEL 179 Query: 181 ARAFQVGFLIFVPFLVIDLVVAAILMSMGMMMVPPAVVALPFKLSFFVLADGWRLLTEGL 240 AFQ+GF IF+PFL+IDLV+A++LM++GMMMVPPA +ALPFKL FVL DGW+LL L Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239 Query: 241 VRSYF 245 +S++ Sbjct: 240 AQSFY 244
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 59.1 bits (143), Expect = 8e-15 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 4/75 (5%) Query: 19 VPIELTVSVGRARPLIRDLLALGEDAILPLDTRVDDPVELFVGDRLVARGELQELEGEEA 78 +P++LTV +GR R I++LL L + +++ LD +P+++ + L+A+GE+ + Sbjct: 60 IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA---- 115 Query: 79 GQLAVRITEIADAGK 93 + VRIT+I + Sbjct: 116 DKYGVRITDIITPSE 130
>FLAGELLIN#Flagellin signature. Length = 507 Score = 67.4 bits (164), Expect = 6e-15 Identities = 48/259 (18%), Positives = 92/259 (35%), Gaps = 3/259 (1%) Query: 4 ILTNNSAMVALQTLKGINSNLSDVQSQISTGKTVSSAKDNSAVWAISKVMESDVNGFKAI 63 I TN+ +++ L S+LS ++S+G ++SAKD++A AI+ S++ G Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 SDSLALGESSVAVARNAAETITDLLTDMKTKIVAA---QGENVDRTKINTDVTALKEQIA 120 S + G S A I + L ++ V A + D I ++ E+I Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 121 SVVSAAQFNGLNLVDGTTASVNVLSSLDRSSSGVDASNIAVTGQNLSTGGYTAKAAFVTG 180 V + QFNG+ ++ + + D + +D I V L G Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVG 183 Query: 181 AATNGVSATLDSFGFALDATGGAADDAAITIATTAFAAGDSISMRLGDTDISYTITAEDV 240 + +A+ A D + + T A + + + T + Sbjct: 184 DLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAEN 243 Query: 241 ASTTTRDVVCLTSAPAGQI 259 + ++A + Sbjct: 244 NTAVDLFKTTKSTAGTAEA 262
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 27.4 bits (60), Expect = 0.010 Identities = 14/78 (17%), Positives = 29/78 (37%) Query: 24 KLHEAAKNLEASFLAEMLKAAGVGKTREAFGGGAGEEHFASFLAEAHAKNLVDRGGIGLA 83 + A+ +E F+ MLK+ ++ + S + A+ + G+GLA Sbjct: 32 NIRPVARQVEGMFVQMMLKSMRDALPKDGLFSSEHTRLYTSMYDQQIAQQMTAGKGLGLA 91 Query: 84 ESIFNALKERQNAQSHTE 101 E + + Q + Sbjct: 92 EMMVKQMTPEQPLPEEST 109
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 29.9 bits (67), Expect = 0.028 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%) Query: 398 IFPV---QVTSQAEVLSMGPQLQSPLPRHGYERDFISLEAMALVSQAEVN 444 ++P+ Q TS A++ + P++Q+ R G ++ IS E MAL +VN Sbjct: 369 MYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVN 418