>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.9 bits (90), Expect = 1e-04 Identities = 34/292 (11%), Positives = 83/292 (28%), Gaps = 33/292 (11%) Query: 881 EINRERNEIDRELNQFNNGEQQLRIQLDNAKEKLQLLNKLIPQLNVLADEDLIDRIEECR 940 +++ + ++ + +L + L I ++L R + Sbjct: 75 DLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKI--------QELEARKADLE 126 Query: 941 EQLDIAE----QDEYFIRQYGVTLSQLEPIANSLQSDPENYEGLKNELTQAIERQKQVQQ 996 + L+ A D I+ + L L+ E + I+ + + Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186 Query: 997 RVFALADVVQRKPHFGYEDAGQAET------------SELNEKLRQRLEQMQAQRDTQRE 1044 + A +++ + + L + LE Sbjct: 187 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 246 Query: 1045 QVRQKQSQFAEYNRVLIQLQSSYDSKYQLLNELIGEISDLGVRADDGAEERARIR----- 1099 +++ +++ A +L+ + + +I L E+A + Sbjct: 247 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV 306 Query: 1100 ----RDELHQQLSTSRQRRSYVEKQLTLIESEADNLNRLIRKTERDYKTQRE 1147 R L + L SR+ + +E + +E + + RD RE Sbjct: 307 LNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASRE 358 Score = 33.5 bits (76), Expect = 0.007 Identities = 52/358 (14%), Positives = 114/358 (31%), Gaps = 29/358 (8%) Query: 414 ANDALEESQAQFEQTEIEIDAVRAQLADYQKALDAQQTRALQYQQAIAALEKAKTLCGLA 473 + E S ++ V+ + ++ + + + AL+ Sbjct: 34 VVNTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKD-------- 85 Query: 474 DLSVKNVEDYHAEFEAHAESLTETVLELEHKMSISEAAKSQFDKAYQLVCKIAGEMPRSA 533 + + + + +++ E K+ EA K+ +KA + + + Sbjct: 86 --HNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTAD-SAK 142 Query: 534 AWESAKELLREYPSQKLQAQQTPQLRTKLHELEQRYAQQQSAVKLLNDFNQRTNLSLQTA 593 E + + + ++ L +L+ A Sbjct: 143 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 202 Query: 594 EELEDYHAEQEALIEDISAGLSEQVENRSTLRQKRENLTALYDENARKAPAWLTAQAALE 653 A I+ + A + ++ L + E ++ K T +A Sbjct: 203 MNFST---ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIK---TLEAEKA 256 Query: 654 RLEQQSGETFEHSQDVMNFMQSQLVKERELTMQRDQLEQKRLQLDE--QISRLSQPDGSE 711 LE + E + + MNF + K + L ++ LE ++ L+ Q+ ++ Sbjct: 257 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRR 316 Query: 712 DPRLNMLAERFGGVLLSELYDDVTIEDAPYFSALYGPSRHAIVVRDLNAVREQLAQLE 769 D + A++ +L + I +A SR + + RDL+A RE QLE Sbjct: 317 DLDASREAKKQLEAEHQKLEEQNKISEA---------SRQS-LRRDLDASREAKKQLE 364 Score = 30.8 bits (69), Expect = 0.042 Identities = 35/201 (17%), Positives = 63/201 (31%), Gaps = 31/201 (15%) Query: 337 KAKAEQNLSQHRLVDLSREAAELAENERTLEVDHQSAVDHLNLVLNALRHQEKITRYQED 396 A ++ L E A L + LE + A++ + + + Sbjct: 236 GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFST---ADSAKIKTLEAEKAA 292 Query: 397 IAELTERLEEQKMV----VEDANDALEESQAQFEQTEIEI-------DAVRAQLADYQKA 445 + LE Q V + L+ S+ +Q E E A ++ Sbjct: 293 LEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD 352 Query: 446 LDAQQTRALQYQQAIAALEKAKTLCGLADLSV--------------KNVEDYHAEFEAHA 491 LDA + +Q A +K + +++ S K VE E + Sbjct: 353 LDASRE---AKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKL 409 Query: 492 ESLTETVLELEHKMSISEAAK 512 +L + ELE ++E K Sbjct: 410 AALEKLNKELEESKKLTEKEK 430
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 26.7 bits (59), Expect = 0.015 Identities = 8/30 (26%), Positives = 13/30 (43%) Query: 42 DRLETAEQTQARFEQMEHLGEFLKELTNSS 71 + + AR EQ E + L+NS+ Sbjct: 164 EHPDGISGAMARIEQAAEGLECRRSLSNSA 193
>PF05043#Transcriptional activator Length = 493 Score = 29.9 bits (67), Expect = 0.018 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 7/65 (10%) Query: 10 IEQDFGIEIPEELLLSIYGQYLMVVTEGGEI-------QKSRVTGKYHHKGSYCDEVSIK 62 E ++ I + EE++ ++ Y + E + S V YH + D++S+K Sbjct: 245 FESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKDSYVEKSYHLLSDFIDQISVK 304 Query: 63 ISGSV 67 + Sbjct: 305 YQIEI 309
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 32.8 bits (74), Expect = 0.003 Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 18/140 (12%) Query: 337 LNFNYSPDMFDDKKTQKPINPSRPSNPGGSSNNTHSNKHD--------EDNYGDPNYPNL 388 LN + +PD D + +P +P+ P P G D D P Sbjct: 359 LNPDANPDT-DGQPGTRPDSPAVPDRPNGRHRKERKEGEDGGLLCKFFPDILACDRLP-- 415 Query: 389 EPPTAHQILEPFKKFFPEFQNLTIQGKAAQCP---TWSFNALNRT----YTIDSHCPILE 441 EP A + P + EFQ I +AQCP T++ L+ + ++ ++ C I E Sbjct: 416 EPNPAEDLNLPSETVNVEFQKSGIFQDSAQCPAPVTFTVTVLDSSRQFAFSFENACTIAE 475 Query: 442 QNRAILGALFTLIWSIIAIR 461 + R +L AL + + IR Sbjct: 476 RLRYMLLALAWAVAAFFCIR 495
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 95.4 bits (237), Expect = 2e-23 Identities = 50/284 (17%), Positives = 113/284 (39%), Gaps = 36/284 (12%) Query: 125 KDEEGAVSASG--DKLVYYGKTEDIARVKSVLKGVDVPSREVVVTGYVFEVQTEEKEGSG 182 D+ + A G + L+ + + ++ V+ +D+ +V+V + EVQ + G Sbjct: 306 LDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLG 365 Query: 183 INLLAKLLSGKLGINIGV-------------------------KQNYENFI-TVNTGNLD 216 I K N G+ ++ GN Sbjct: 366 IQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWA 425 Query: 217 AMIELFRTDSRFHVVSSPTLRVKSGSKGNFSVGSDVPVLGAVTYDRDGRAVQSIEYRSSG 276 ++ + ++ ++++P++ + F+VG +VPVL ++E ++ G Sbjct: 426 MLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVG 485 Query: 277 VIFDIQPTI-KNNAIDLKINQQLSNFVKTDTGVNQS--PTLIKRDIVTDVTLKSGDIVVL 333 + ++P I + +++ L+I Q++S+ + + T R + V + SG+ VV+ Sbjct: 486 IKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVV 545 Query: 334 GGLAENKITEGETGFSFLPKGILSGR-----SKSNSKTDIVILL 372 GGL + +++ L + G SK SK ++++ + Sbjct: 546 GGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFI 589
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 2e-22 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 1 MTR-KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKI-KENPKLILLDWMLPGR 58 MT IL+ +D+ AIR ++ LS+ YDV S+ T I + L++ D ++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 59 SGIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAV 118 + + IKK +P+++++A++T I GA DY+ KPF L+ I Sbjct: 61 NAFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 119 WRRIYEQQSQ 128 + S+ Sbjct: 119 LAEPKRRPSK 128
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 70.3 bits (172), Expect = 2e-14 Identities = 59/278 (21%), Positives = 96/278 (34%), Gaps = 77/278 (27%) Query: 350 IMGHVDHGKTSLLDYIRKAKVAAGEAG------------------GITQHIGAYHVEMDD 391 ++ HVD GKT+L + + A E G GIT G + ++ Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 392 GKMITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTIEAIQHAKAAGAPLVVA 451 K + +DTPGH F + R D +L+++A DGV QT + G P + Sbjct: 68 TK-VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFF 126 Query: 452 VNKIDKPEANP-----------------------------------DRVEQELLQHDVIS 476 +NKID+ + ++ + + +D + Sbjct: 127 INKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLL 186 Query: 477 EKFGGDVQ------------------FVPV---SAKKGTGVDDLLDAILLQSEVLELTAV 515 EK+ PV SAK G+D+L++ I ++ T Sbjct: 187 EKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVIT--NKFYSSTHR 244 Query: 516 KDGMASGVVIESYLDKGRGPVATILVQSGTLRKGDIVL 553 G V + + R +A I + SG L D V Sbjct: 245 GQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVR 282
>SECA#SecA protein signature. Length = 901 Score = 33.3 bits (76), Expect = 1e-04 Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 52 DLSDEELKKLAAELKKRCGCGGAVKNGIIEIQGEKRDLLKQLLEQKGFKVKLSGG 106 LSDEELK AE + R G ++N I E R+ K++ + F V+L GG Sbjct: 37 KLSDEELKGKTAEFRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGG 91
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 107 bits (268), Expect = 3e-34 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 2 TKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLENGDRVEVRGFGSFSLHHRQPRLG 61 K +L+ K+ A+ L K+ V + +S L G++V++ GFG+F + R R G Sbjct: 3 NKQDLIAKV-AEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGDSVNLSAKSVPYFKAGKELKARV 90 RNP+TG+ + + A VP FKAGK LK V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.029 Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 22/162 (13%) Query: 318 PSKVVSLGDTVEVMVLEIDEERRRISLG-LKQCKANPWTQFADTHNKGDKVTGKIKSITD 376 + T ++ ++ + +I+ G L A P Q N + K+ + Sbjct: 190 ADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQL----NASIIAQTRFKNPEE 245 Query: 377 FGIFIGLEGGIDGLVHLSDISWSISGEEAVRQYKKGDEVSAVVLAV------------DA 424 FG +V L D++ G E + + A L + A Sbjct: 246 FGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKA 305 Query: 425 VKERISLGIKQLEED-----PFNNFVAINKKGAVVSATVVEA 461 +K +++ + P++ + V T+ EA Sbjct: 306 IKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEA 347
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 32.0 bits (72), Expect = 0.011 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 600 ETMAYATLLDEGVNVRLSGEDAGRGTFFHRHAVVHNQNDGTGYVPLTHLHANQGRFEVWD 659 E + Y+ L + G NV L+G +AGR R+ + T P L+ +W Sbjct: 202 EHIYYSYLAENGDNVDLNGNEAGRDRSAMRYLSKVQYGNAT---PAADLY-------LWT 251 Query: 660 SVLSEES---VLAFEYGYATTDPKTLTIWEAQFGDFANGAQIVIDQFISSGEQKWGRMCG 716 S L F+YG DP+ + AQ A Q + E + R+C Sbjct: 252 SATPAVQWLFTLVFDYGERGVDPQVPPAFTAQNSWLAR--QDPFSLYNYGFEIRLHRLCR 309 Query: 717 LVMLLPH 723 V++ H Sbjct: 310 QVLMFHH 316
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.7 bits (85), Expect = 9e-05 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 13/107 (12%) Query: 124 DINECKAFKRDYNNAISELRKQIQE----QKKQAIAKQKAVEQQRKAQQIQAEKKRKARE 179 + A Y N + ++ + KQAIAK +EQ+ K + E Sbjct: 215 ERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNE------- 267 Query: 180 AYLKTPQGQAELARQQQAEYQRQMLAQQREYQQQMLEMQRQAAQQAA 226 L+ + Q E + + + + ++ ++L+ RQ Sbjct: 268 --LRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIG 312
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 31.5 bits (71), Expect = 0.004 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 6/74 (8%) Query: 153 KIKKHYTVYPNYKNIVSNIEPISLWDNKVDGDIDG--KVSFFIGQPLLNTKEENISLIKK 210 I+K + + P + PIS+ D DI + QP LN ++ + I Sbjct: 127 PIRKPFKLTPPQPTMS----PISIADRDFGIDIPNIPQAQRQAAQPPLNDQKRAAARIAW 182 Query: 211 LKEQISFDYYFPHP 224 LK DY P Sbjct: 183 LKNCAGIDYMVKDP 196
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.5 bits (87), Expect = 1e-04 Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 9/161 (5%) Query: 246 SNKPLQIFILIAIILLLANLLIGAMNPYLYIDYFNSKFALSIGGTLP---VIASFCVAPF 302 N+PL + + + + LI + P L D +S + G L + F AP Sbjct: 3 PNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPV 62 Query: 303 AQTLVKKFGKKESASIALLLTGIGYFILFGVKTTDVWLYMAIAFVSLLGLNYFMVIIWAF 362 L +FG++ ++L + Y + LY+ + G + A+ Sbjct: 63 LGALSDRFGRRPVLLVSLAGAAVDYA-IMATAPFLWVLYIGRIVAGITGAT--GAVAGAY 119 Query: 363 ITDIIDYQFLKTHRREDGTIYAVYSFARKIGQALAGGLGGV 403 I DI D R G + A + F G L G +GG Sbjct: 120 IADITD---GDERARHFGFMSACFGFGMVAGPVLGGLMGGF 157 Score = 30.6 bits (69), Expect = 0.014 Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 20/171 (11%) Query: 187 IIPEMFTIIMGVLMLIAFYLYQFCWRNSVERIQLPEKVGRRHNRNECFGDVKAIFVSLFS 246 P L + F F S + + P + + S Sbjct: 157 FSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRR-----------EALNPLASFRW 205 Query: 247 NKPLQIFILIAIILLLANLLIGAMNPYLYIDYFNSKFALS---IGGTLPVIA---SFCVA 300 + + + + + + L +G + L++ + +F IG +L S A Sbjct: 206 ARGMTVVAALMAVFFIMQL-VGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQA 264 Query: 301 PFAQTLVKKFGKKESASIALLLTGIGYFILFGVKTTDVWLYMAIAFVSLLG 351 + + G++ + + ++ G GY +L T W+ I + G Sbjct: 265 MITGPVAARLGERRALMLGMIADGTGYILL--AFATRGWMAFPIMVLLASG 313
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 29.4 bits (66), Expect = 0.028 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 403 FVYFGAVRSGNVVWNFADTVMAVMAIINLIAILMLSPI 440 A RS + W A V +A ++A+ L+P+ Sbjct: 23 DKLAAAERSKKLAWVVA-GVAGALATAGVVAVAALTPL 59
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 169 bits (429), Expect = 3e-56 Identities = 72/171 (42%), Positives = 100/171 (58%), Gaps = 4/171 (2%) Query: 1 MFDIGFSELILLMVLGLVVLGPKRLPIAIRTVMDWVKTIRGLAANVQNELKQELKLQELQ 60 MFDIGFSEL+L+ ++GLVVLGP+RLP+A++TV W++ +R LA VQNEL QELKLQE Q Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ 60 Query: 61 DSIKKVESLNLQALSPELSKTVEELKAQADKMK----AELEDKAAQAGTTVEEQIKEIKS 116 DS+KKVE +L L+PEL +++EL+ A+ MK A +KA+ T+ + + Sbjct: 61 DSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVKDNE 120 Query: 117 AAENAEKPQNAISVEEAAETLSEAEKTPTDLTALETHEKVELNTHLSSYYP 167 AA P A + + E E P A + K + SS P Sbjct: 121 AAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKTAAPSPSSSDKP 171
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 1e-05 Identities = 36/255 (14%), Positives = 77/255 (30%), Gaps = 45/255 (17%) Query: 51 EGE--AKNRLLAEL---QTSIDLLQQIQAQQKINDALQTTLSHSESEIRKNNAEIQALKK 105 EGE K +L +L D + Q+ QT I N L Sbjct: 114 EGESVRKGDVLLKLTALGAEADT-LKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPD 172 Query: 106 QQETATSTDDNAQSQDYLQNSLTKLNDQLQDTQNALSTANAQLAGQSSISERAQAALTEN 165 + +++ L Q QN L + + A + Sbjct: 173 EPYFQNVSEEEVLRLTSLIKE------QFSTWQNQKYQKELNLDKKRAERLTVLARINRY 226 Query: 166 VVRTQQINQQLANNDIGSILRKQYQIELQLIDLKNSYNQNLLKNNDQLSLLYQSRYDLLN 225 ++ +L +D S+L KQ + +++ +N Y + Sbjct: 227 ENLSRVEKSRL--DDFSSLLHKQAIAKHAVLEQENKYVE-------------------AV 265 Query: 226 LRLQVQQQNIIAIQEVINQKNLQQSQNQVEQAQQQQKTVQNDYIQKELDRNAQLSQYLLQ 285 L+V + + I+ +++ A+++ + V + + LD+ Q + + Sbjct: 266 NELRVYKSQLEQIE------------SEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL 313 Query: 286 QTEKANSLTQDELRM 300 T + + + Sbjct: 314 LTLELAKNEERQQAS 328 Score = 32.5 bits (74), Expect = 0.011 Identities = 24/217 (11%), Positives = 67/217 (30%), Gaps = 33/217 (15%) Query: 255 EQAQQQQKTVQNDYIQKELDRNAQLSQYLLQQTE----KANSLTQDELRMRNILDSLTQT 310 E ++ ++ + E D S L + E + S + + ++ + Sbjct: 116 ESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPY 175 Query: 311 QRTIDEQISALQGTLVLSRIIQQQKQKLPTNLNIQGLSKQIADLRVHIFDITQK------ 364 + + E+ +L+ + Q QK LN+ + + I Sbjct: 176 FQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Query: 365 ---------------RNELYDLDNYINKVESEDGKQFTEAERTQVKTLLTERR--KMTSD 407 ++ + + +N + +E ++ E+ + + L + +T Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 408 LIKSLNNQLNLAISLELTQLQITQISDQIQSKLEQQS 444 + ++L I ++ ++ E+Q Sbjct: 296 FKNEILDKLRQT------TDNIGLLTLELAKNEERQQ 326
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 150 bits (379), Expect = 9e-47 Identities = 56/209 (26%), Positives = 84/209 (40%), Gaps = 25/209 (11%) Query: 55 MVLEEPAPEPEDVQKEPENVQKEPEPEKQEIVEDPTIKPEPKKIKEPEKEKPKPKEKPKE 114 MV P+ VQ PE EPEPE + I E P E P EKPK Sbjct: 49 MVTPADLEPPQAVQPPPE-PVVEPEPEPEPIPEPPK-------------EAPVVIEKPKP 94 Query: 115 KPKNKPKKEVKPQKKPINKELPKGDENIDSSANVNDKASTTSAANSNAQVAGSGTDTSEI 174 KPK KPK K Q++P +++ + S A TS+ + A + S Sbjct: 95 KPKPKPKPVKKVQEQP-KRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 153 Query: 175 AAYRSAIRREIESHKRYPTRAKIMRKQGKVSVSFNVGADGSLSGAKVTKSSGDESLDKAA 234 A +YP RA+ +R +G+V V F+V DG + ++ + ++ Sbjct: 154 RALSRN-------QPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREV 206 Query: 235 LDAINVSRSVGTRPAGFPSSLSVQISFTL 263 +A+ R +P S + V I F + Sbjct: 207 KNAMRRWRYEPGKPG---SGIVVNILFKI 232
>PF06291#Lambda prophage Bor protein Length = 102 Score = 28.1 bits (62), Expect = 0.011 Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 1 MKKIILSLTTAIILVGCSSNPETLKASNDSFQKSEASIPHF 41 MKK++ S A+++ GC+ T+ + E HF Sbjct: 6 MKKMLFSAALAMLITGCAQQTFTVGNKPTAVTPKETITHHF 46
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 26.6 bits (58), Expect = 0.011 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Query: 48 PEMFAYMQELIEDAELVRIAEERKAEG 74 P+MF YM +L E +I+E K EG Sbjct: 262 PDMFEYMNKL-EKGGFEKISESLKKEG 287
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 25.5 bits (55), Expect = 0.019 Identities = 13/45 (28%), Positives = 24/45 (53%) Query: 29 RLGNAKDAIKSAQMAYTNPNFVRQIKKDPDKLIYQGIQTLIAKYG 73 +LGNA + + PN ++Q+ ++ KL QG+Q + + G Sbjct: 436 KLGNALSKMMGETIKKLVPNVLKQLAQNGSKLFTQGMQRITSGLG 480
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 28.3 bits (63), Expect = 0.033 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Query: 117 LPPLVNELNPEPSIEPSDNHHIKKTTQKSESEILLEQF-GITGQLAKDFIAHRKAKKGVI 175 PP +LNP + K+ + + I + F G++ L+ + K + Sbjct: 164 YPPKSPKLNPFDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDL 223 Query: 176 NQTQLNRLQKQ 186 + + L + + Sbjct: 224 SLSNLKEIVEV 234
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 30.7 bits (69), Expect = 0.006 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 17/85 (20%) Query: 166 WFEWEKDNRKEIPKLHPT-------------QKPIAVLKRLIEIFTDEGDVVIDPVAG-- 210 W WE+D + T P + +LI + TD D+ I+ G Sbjct: 20 WQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKLISVKTDVLDLTINTRGGDV 79 Query: 211 -SASTLRAARELNRPSYGFEIKKDS 234 A +ELN F++ + S Sbjct: 80 EQALLPAYPKELNSTQ-PFQLLETS 103
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 27.9 bits (62), Expect = 0.049 Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 2/77 (2%) Query: 118 SNTGNGSVATNTGYQSVATNTGDLSVATNTGDLSAATNTGDRSVATNTGYQ-SVATNTGD 176 S+ NG + G +LS + TG + Y+ Sbjct: 624 SHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIG 683 Query: 177 LSAATNTGDLSAVEVSG 193 S + + L VSG Sbjct: 684 YSHSDDIKQLYY-GVSG 699
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 108 bits (270), Expect = 4e-31 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 8/117 (6%) Query: 42 ADLQQRYNT----VYFGFDKYDITGEYVQILDAHAAYLNAT--PAAKVLVEGNTDERGTP 95 ++Q ++ T V F F+K + E LD + L+ V+V G TD G+ Sbjct: 208 PEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSD 267 Query: 96 EYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLA 152 YN L +RRA +V YL KG+ A K+ GE P V G+ K R A++ Sbjct: 268 AYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNP-VTGN-TCDNVKQRAALID 322
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 63.9 bits (155), Expect = 6e-13 Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 4/188 (2%) Query: 98 HQQEVQRQEELKRQQEIKKQQEQARQEALEKQKQAEEARAKQAAEAAKLKA-DAEAKRLA 156 + EV+++ + I E AR +A A +E Sbjct: 981 YNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETV 1040 Query: 157 AAAKQAEEEAKAKAAEIAAQKAKQEAEA--KAKLEAEAKAKAVAEAKAKAEAEAKAKAAA 214 A + E + K + A + Q E +AK +A + A++ +E + Sbjct: 1041 AENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET 1100 Query: 215 EAKAKAEAEAKAKAEAKAKAEAKAKAEAEAKAKAEAEAKAKAAAEAKAKADAEAKAATEA 274 + A E E KAK E + E K ++ K E + AE + D Sbjct: 1101 KETATVEKEEKAKVETEKTQEV-PKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 275 KRKADQAS 282 + A Sbjct: 1160 SQTNTTAD 1167 Score = 61.2 bits (148), Expect = 4e-12 Identities = 36/246 (14%), Positives = 77/246 (31%), Gaps = 21/246 (8%) Query: 43 EGEGDVIGAVIVDTGTAAQEWGRIQQQKKGQSDKQKRPEPVVEEKPPEPNQEEIKHQQEV 102 E + + T Q S+ ++ +E P P + Sbjct: 986 EKRNQTVDTTNITTPNNIQ-----ADVPSVPSNNEEIARV--DEAPVPPPAPATPSETTE 1038 Query: 103 QRQEELKRQQEIKKQQEQARQEALEKQKQAEEARAKQAAEAAKLKADAEAKRLAAAAKQA 162 E K++ + ++ EQ E A+ ++ A+ AK A + A+ Sbjct: 1039 TVAENSKQESKTVEKNEQDATET--------TAQNREVAKEAKSNVKANTQT-NEVAQSG 1089 Query: 163 EEEAKAKAAEIAAQKAKQEAEAKAKLEAEAKAKA---VAEAKAK-AEAEAKAKAAAEAKA 218 E + + E + A E E KAK+E E + ++ K ++E A A+ Sbjct: 1090 SETKETQTTE-TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 219 KAEAEAKAKAEAKAKAEAKAKAEAEAKAKAEAEAKAKAAAEAKAKADAEAKAATEAKRKA 278 + +++ A + A+ + + ++ + E T Sbjct: 1149 NDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ 1208 Query: 279 DQASLD 284 + + Sbjct: 1209 PTVNSE 1214 Score = 46.2 bits (109), Expect = 2e-07 Identities = 29/228 (12%), Positives = 69/228 (30%), Gaps = 10/228 (4%) Query: 67 QQQKKGQSDKQKRPEPVVEEKPPEPNQEEIKHQ-----QEVQRQEELKRQQEIKKQQEQA 121 Q ++ + K + + E + Q + ++E K + E +K QE Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVP 1123 Query: 122 RQEALEKQKQAEEARAKQAAEAAKLKADAEAKRLAAAAKQAEEEAKAKAAEIAAQKAKQE 181 + + KQ + + AE A+ + ++ + A+ + +Q Sbjct: 1124 KVTSQVSPKQEQSETVQPQAEPARENDPTVNIK-EPQSQTNTTADTEQPAKETSSNVEQP 1182 Query: 182 AEAKAKLEAEAKAKAVAEAKAKAEAEAKAKAAAEAKAKAEAEAKAKAEA---KAKAEAKA 238 + E A + + + K K ++ + + Sbjct: 1183 VTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242 Query: 239 KAEAEAKAKAEAEAKAKAAAEAKAKADAEAKAATEA-KRKADQASLDD 285 A + ++A+AKA A +A + Q +++ Sbjct: 1243 DRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNN 1290 Score = 32.3 bits (73), Expect = 0.004 Identities = 23/184 (12%), Positives = 54/184 (29%), Gaps = 3/184 (1%) Query: 57 GTAAQEWGRIQQQKKGQSD---KQKRPEPVVEEKPPEPNQEEIKHQQEVQRQEELKRQQE 113 A E + Q+ K S KQ++ E V + P + + +E Q Q E Sbjct: 1110 EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169 Query: 114 IKKQQEQARQEALEKQKQAEEARAKQAAEAAKLKADAEAKRLAAAAKQAEEEAKAKAAEI 173 ++ + E + + + + + ++ Sbjct: 1170 QPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRS 1229 Query: 174 AAQKAKQEAEAKAKLEAEAKAKAVAEAKAKAEAEAKAKAAAEAKAKAEAEAKAKAEAKAK 233 + + A + ++A+AKA A +A ++ ++ + Sbjct: 1230 VPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMN 1289 Query: 234 AEAK 237 E + Sbjct: 1290 NEGQ 1293
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1040 bits (2692), Expect = 0.0 Identities = 361/575 (62%), Positives = 435/575 (75%), Gaps = 8/575 (1%) Query: 1 MALTISRAQYVATYGPTVGDKVRLGDTNLWATIEQDLLTKGDECKFGGGKSVRDGMAQSG 60 M+ +SRA Y +GPTVGDKVRL DT L+ +E+D T G+E KFGGGK +RDGM QS Sbjct: 1 MSYRMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQS- 59 Query: 61 TATRDNPNVLDFVITNVMIIDARLGIIKADIGIRDGRIVGIGQAGNPDTMDNVTPNMIIG 120 TR+ +D VITN +I+D GI+KADIG++DGRI IG+AGNPD V +I+G Sbjct: 60 QVTREG-GAVDTVITNALILDH-WGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVG 115 Query: 121 ASTEVHNGVHLIATAGGIDTHIHFICPQQAQHAIESGVTTLIGGGTGPADGTHATTCTPG 180 TEV G I TAGG+D+HIHFICPQQ + A+ SG+T ++GGGTGPA GT ATTCTPG Sbjct: 116 PGTEVIAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPG 175 Query: 181 AWYMEHMFQAAEALPVNVGFFGKGNCSTLDPLREQIEAGALGLKIHEDWGATPAVIDSAL 240 W++ M +AA+A P+N+ F GKGN S L E + GA LK+HEDWG TPA ID L Sbjct: 176 PWHIARMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCL 235 Query: 241 KVADEMDIQVAIHTDTLNESGFLEDTMKAIDGRVIHTFHTEGAGGGHAPDIIKAAMYSNV 300 VADE D+QV IHTDTLNESGF+EDT+ AI GR IH +HTEGAGGGHAPDII+ NV Sbjct: 236 SVADEYDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNV 295 Query: 301 LPASTNPTRPFTKNTIDEHLDMLMVCHHLDKRVPEDVAFADSRIRPETIAAEDILHDMGV 360 +P+STNPTRP+T NT+ EHLDMLMVCHHL +PED+AFA+SRIR ETIAAEDILHD+G Sbjct: 296 IPSSTNPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGA 355 Query: 361 FSIMSSDSQAMGRIGEVVIRTWQTADKMKMQRGELGNE--GNDNFRIKRYIAKYTINPAI 418 FSI+SSDSQAMGR+GEV IRTWQTADKMK QRG L E NDNFR+KRYIAKYTINPAI Sbjct: 356 FSIISSDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAI 415 Query: 419 AHGIAEHIGSLEVGKIADIVLWKPMFFGVKPEVVIKKGFISYAKMGDPNASIPTPQPVFY 478 AHG++ IGSLEVGK AD+VLW P FFGVKP++V+ G I+ A MGDPNASIPTPQPV Y Sbjct: 416 AHGLSHEIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHY 475 Query: 479 RPMYGAQGLATAQTAVFFVSQAAEKADIRAKFGLHKETIAVKGCR-NVGKKDLVHNDVTP 537 RPM+GA G + ++V FVSQA+ A + + G+ KE +AV+ R +GK ++HN +TP Sbjct: 476 RPMFGAYGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTP 535 Query: 538 NITVDAERYEVRVDGELITCEPVDSVPLGQRYFLF 572 +I VD E YEVR DGEL+TCEP +P+ QRYFLF Sbjct: 536 HIEVDPETYEVRADGELLTCEPATVLPMAQRYFLF 570
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 1e-04 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 28/160 (17%) Query: 570 VIGQEEAVDAVANAIRRRRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAM 629 ++G+ A+ + + R L + + + G +G GK + + L + Sbjct: 139 LVGRSAAMQEIYRVLAR----LMQTDLTL---MITGESGTGKELVARALHDYGKRRNGPF 191 Query: 630 VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSV-------ILLDEVEKA 682 V I+M+ S L G +E+G + T A R + LDE+ Sbjct: 192 VAINMAAIPRDLIESELFG-------HEKGAF-TGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 683 HADVFNILLQVLDDG---RLTDGQGRTVDFRNTVVIMTSN 719 D LL+VL G + D R ++ +N Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN 280 Score = 36.3 bits (84), Expect = 5e-04 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 151 DQNAEESRQALEKYTIDLTARAESG-KLDPVIGRDEEIRRAIQVLQRRTKNN-PVLI-GE 207 + +AL + + + P++GR ++ +VL R + + ++I GE Sbjct: 109 TELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGE 168 Query: 208 PGVGKTAI 215 G GK + Sbjct: 169 SGTGKELV 176
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 175 bits (446), Expect = 2e-49 Identities = 103/443 (23%), Positives = 177/443 (39%), Gaps = 62/443 (13%) Query: 9 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFESARGDVDE--RVMDSNDLEKERGITILAKN 66 K+ NI ++AHVD GKTTL + LL SG G VD+ D+ LE++RGITI Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITEL-GSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 67 TAINWNDYRINIVDTPGHADFGGEVERVLSMVDSVLLVVDAFDGPMPQTRFVTQKAFAHG 126 T+ W + ++NI+DTPGH DF EV R LS++D +L++ A DG QTR + G Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 Query: 127 LKPIVVINKVDRPGARPDWVVDQVFDLF---------VNLGASDEQLDFPII--YASALN 175 + I INK+D+ G V + + V L + +F + + + Sbjct: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180 Query: 176 G--------VAG--LEHEDLAEDMT-----------------------PLFEAIVKYVES 202 G ++G LE +L ++ + L E I S Sbjct: 181 GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYS 240 Query: 203 PKVELDAPFQMQISQLDYNNYVGVIGIGRIKRGSIKPNQPVTIINSEGKTRQGRIGQVLG 262 + ++ +++Y+ + R+ G + V I E +I ++ Sbjct: 241 STHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI----KITEMYT 296 Query: 263 HLGLQRYEEDVAYAGDIVAITGLGELNISDTICDINAVEALPSLTVDEPTVTMFFCVNTS 322 + + + D AY+G+IV + L ++ + D + + P + + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEF-LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKP 355 Query: 323 PFAGQEGKYVTSRQILERLNKELVHNVALRVEETPNPDEFRVSGRGELHLSVLIENMRRE 382 Q L ++ + LR E +S G++ + V ++ + Sbjct: 356 ---QQREML---LDALLEISDS---DPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEK 406 Query: 383 -GYELAVSRPKVIYRDIDGKKQE 404 E+ + P VIY + KK E Sbjct: 407 YHVEIEIKEPTVIYMERPLKKAE 429 Score = 32.9 bits (75), Expect = 0.004 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 3/89 (3%) Query: 404 EPYEQVTIDVEEQHQGSVMEALGIRKGEVRDMLPDGKG-RVRLEYIIPSRGLIGFRGDFM 462 EPY I +++ + D K V L IP+R + +R D Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVD--TQLKNNEVILSGEIPARCIQEYRSDLT 594 Query: 463 TMTSGTGLLYSSFSHYDEIKGGDIGQRKN 491 T+G + + Y G + Q + Sbjct: 595 FFTNGRSVCLTELKGYHVTTGEPVCQPRR 623
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 28.7 bits (64), Expect = 0.033 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 207 KENIIKLLPSFSQSKSQSNIHSMEYDLSAL-HFLQKHYGINIYCISPES 254 +E +I LL +F S++ I EY + L L +GI +Y ++ + Sbjct: 156 REALIPLLRNFELKLSKNKIVGEEYRIRYLIALLYSKFGIKVYDLTQQD 204
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 27.4 bits (60), Expect = 0.032 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%) Query: 33 SLNQTNQEFKQGFNLRLDELRFSKEQIEENLTEA---KKV--QVENLTNALDIAKNTPVV 87 +LN EFK G N ++ +K +E ++ + +KV +V+NL A+ +AK T Sbjct: 741 NLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKATGDF 800 Query: 88 YPANYYITDRQLFKLNKLASQLELVEDVKT 117 + D + F +LA Q + E + Sbjct: 801 SRVEQALADLKNFSKEQLAQQAQKNESLNA 830
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 29.1 bits (65), Expect = 0.038 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 316 GAGGMFGKVLDASGVGKALADVLSSTGLPV-LLLGFILAALLRAAQGSATVAVITTATIL 374 AG G V + L VLSS G + G +L +RA + ++ +++ IL Sbjct: 218 AAGSQRGTVAGGVNTDR-LTSVLSSAGGSFGIFNGDVLGLSVRALKTNSHSKILSVPRIL 276
>PF03309#Bvg accessory factor Length = 271 Score = 29.3 bits (66), Expect = 0.031 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 12/74 (16%) Query: 5 LGIDCGGTFIKAAIFDQNGTLQSIARRNIPIISEKPGYAERDMDELWNLCAQVIQKTIRQ 64 L ID T + +G + + I +E E DEL +I Sbjct: 3 LAIDVRNTHTVVGLISGSGDHAKV-VQQWRIRTEP----EVTADELALTIDGLIGDD--- 54 Query: 65 SSILPQQIKAIGIS 78 +++ Sbjct: 55 ----AERLTGASGL 64
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 27.6 bits (61), Expect = 0.023 Identities = 46/203 (22%), Positives = 67/203 (33%), Gaps = 45/203 (22%) Query: 1 MKKSLLAVIVGAFAFASVANA-----NIYAEGDIGLSQTKANGSSNTRVEPR-------V 48 MKK+ +A+ V FA+VA A Y +G SQ G N Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGA 60 Query: 49 SVGYKVGNTRVA--------GDYTHHGKVDGT--KIQG------LGASVLYDFDTNSKVQ 92 GY+V N V G + G V+ K QG LG + D D ++ Sbjct: 61 FGGYQV-NPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTR-- 117 Query: 93 PYVGARVATNQFKYTNRAEQKFKSSSDIKLGYGVVAGAKYKLDGNWYANGGVEYNRLGNF 152 +G V K + + D + G +Y + +EY N Sbjct: 118 --LGGMVWRADTK-----SNVYGKNHDTGVSPVFAGGVEYAITPEIAT--RLEYQWTNNI 168 Query: 153 -----DSTKVNNYGAKVGVGYGF 170 T+ +N +GV Y F Sbjct: 169 GDAHTIGTRPDNGMLSLGVSYRF 191
>PF03895#Serum resistance protein DsrA. Length = 79 Score = 39.0 bits (91), Expect = 5e-07 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Query: 97 KGTAGSVSAGNEIR--GITRQITGVAAGTYRGQSAVAAGVRYTPKPNMVISLSGSADTNN 154 G A + ++ G+ + A G YR ++A+A GV + +T N Sbjct: 7 TGLANQSALSMLVQPNGVGKTSVSAAVGGYRDKTALAIGVGSRITDRFTAKAGVAFNTYN 66 Query: 155 GVGAATGVSFGF 166 G G + G S G+ Sbjct: 67 G-GMSYGASVGY 77
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.4 bits (73), Expect = 0.003 Identities = 13/56 (23%), Positives = 22/56 (39%) Query: 1 MSNNDFLVLKNITKAFGKAVVIDNLDLTIKRGTMVTLLGPSGCGKTTVLRLVAGLE 56 L+ + K V ++ K V L G G GK+T++ + GL+ Sbjct: 565 YKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 55.3 bits (133), Expect = 2e-10 Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 1/185 (0%) Query: 36 LSDIAQSFDMQTADTGLMMTVYAWTVLIMSLPAMLATGNMERKSLLIKLFIIFIVGHILS 95 L DIA F+ A T + T + T I + + + K LL+ II G ++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 96 VIAWNFW-ILLLARMCIALAHSVFWSITASLVMRISPKHKKTQALGMLAIGTALATILGL 154 + +F+ +L++AR + F ++ +V R PK + +A G++ A+ +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 155 PIGRIVGQLVGWRVTFGIIAVLALSIMFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWL 214 IG ++ + W I + +++ FL+ L + K I + L++ + L Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFML 216 Query: 215 YVTTA 219 + T+ Sbjct: 217 FTTSY 221
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 32.0 bits (72), Expect = 0.006 Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 166 EKMENADENDRTSEEEQDEWEQEFDFDSEEDTALIDDALDEELEEEQDK 214 K NA+ + +Q E+EFD+ +E AL++ EL E + K Sbjct: 388 SKKNNAEMKSKQMSTDQMTSEKEFDYYTETLKALLEKEDSAELNENEKK 436
>cloacin#Cloacin signature. Length = 551 Score = 28.9 bits (64), Expect = 0.023 Identities = 13/46 (28%), Positives = 22/46 (47%) Query: 100 PFDVGFMDYEFRKLNLNVKTDDICLVTDTLQMARQMYPGKRSNLDA 145 P + +YE + LN +D+ + A Q+Y ++S LDA Sbjct: 315 PVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDA 360
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 43.7 bits (103), Expect = 6e-07 Identities = 60/280 (21%), Positives = 101/280 (36%), Gaps = 49/280 (17%) Query: 2 KKTLAALIVGAFAASAANAAVVYNNEGTKVELGGRLSVIAEQSNTTVDDQKQQHGALRNQ 61 +K LA +I AA AA+AA +YN +G K++L G++ + S+ + D Q + Sbjct: 3 RKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTY------ 56 Query: 62 GSRFHIKATHNFGDGFYAQGYLETRLVTDVTKNSADHFGDITTKYAYVTLGNKALGEVKL 121 R K D G E + + T+ + T+ A+ L G Sbjct: 57 -MRVGFKGETQINDQLTGYGQWEYNVQANTTEGEGA---NSWTRLAFAGLKFGDYGSFDY 112 Query: 122 GRAKTIADGITSAED--KEYGVLNNSKYVPTNGNTVGYTFKGIDGLVLGANYLLAQERST 179 GR + + D E+G G++ Y D + G +A R+T Sbjct: 113 GRNYGVLYDVEGWTDMLPEFG-----------GDSYTYA----DNYMTGRANGVATYRNT 157 Query: 180 SDFFGTPGEVSPQKISNGVQVGAKYDANNIIAAIAFGRTNYRENIQPNVSLSGR---KQQ 236 DFFG + +G+ +Y N ++ NI N +G Sbjct: 158 -DFFG---------LVDGLNFALQYQGKN------ESQSADDVNIGTNNRNNGDDIRYDN 201 Query: 237 LEGVLSTLGYRFSDLGLLVSLDSGYAKTKNHKEMPSRSGN 276 +G + Y D+G+ S + Y + E + G Sbjct: 202 GDGFGISTTY---DIGMGFSAGAAYTTSDRTNEQVNAGGT 238 Score = 33.3 bits (76), Expect = 0.001 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 15/122 (12%) Query: 151 NGNTVGY--TFKGIDGLVLGANYLLAQERSTSDFFGTPGEVSPQKISNGVQVGAKYDANN 208 NG+ G T+ G GA Y T++ G ++ ++ G KYDANN Sbjct: 201 NGDGFGISTTYDIGMGFSAGAAY--TTSDRTNEQVNAGGTIAGGDKADAWTAGLKYDANN 258 Query: 209 IIAAIAFGRTN-----YRENIQPNVSLSGRKQQLEGVLSTLGYRFSDLGLLVSLDSGYAK 263 I A + T + + + ++ + Q E Y+F D GL ++ + Sbjct: 259 IYLATMYSETRNMTPYGKTDKGYDGGVANKTQNFEVTAQ---YQF-DFGLRPAV--SFLM 312 Query: 264 TK 265 +K Sbjct: 313 SK 314
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.8 bits (75), Expect = 0.002 Identities = 12/29 (41%), Positives = 19/29 (65%) Query: 339 PARAIGVDDRLGSVEKGKIANLAVFTPNY 367 PA A G+ +GS+E GK A+L ++ P + Sbjct: 413 PAIAHGLSHEIGSLEVGKRADLVLWNPAF 441
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.0 bits (78), Expect = 9e-04 Identities = 33/192 (17%), Positives = 66/192 (34%), Gaps = 53/192 (27%) Query: 51 LEESAVENKDKLPTPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGK 110 + A+ + P+ E + ++G+ A +Y R + Sbjct: 114 IIGRALAEPKRRPSKLEDDSQDGMPLVGRSAA----MQEIYRVLAR---------LMQTD 160 Query: 111 SNILLIGPTGSGKTLLAQTL---ARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNC 167 +++ G +G+GK L+A+ L +R N PF + + ++++ L Sbjct: 161 LTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIP---------RDLIESELFGH 211 Query: 168 EYDT------------EKAEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEG 215 E E+AE G +++DEI + Q LL++++ Sbjct: 212 EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMP--------------MDAQTRLLRVLQQ 257 Query: 216 TIASIPPQGGRK 227 GGR Sbjct: 258 G--EYTTVGGRT 267
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 139 bits (351), Expect = 9e-46 Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 18 EGKSKGLNTFLWVLAVIFFAAAAIGNIYFQQIYSLPIRVIGMAIALVIAFILAAITNQGT 77 +G +GL WV+ V A +GN ++ I LP+R + + I + A +A +T +G Sbjct: 8 QGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIM-LPLRALAVVILIAAAGGVALLTTKGK 66 Query: 78 KARAFFNDSRTEARKVVWPTRAEARQTTLIVIGVTMIASLFFWAVDSIIVTVINFLTDLR 137 AF ++RTE RKV+WPTR E TTLIV VT + SL W +D I+V +++F+T LR Sbjct: 67 ATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGLR 126 Query: 138 F 138 F Sbjct: 127 F 127
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 319 bits (820), Expect = e-113 Identities = 111/253 (43%), Positives = 159/253 (62%), Gaps = 11/253 (4%) Query: 4 KAILTAL-LGAIALTGCANNNDTKQASERNDSLEGFNRTMWKFNYNVLDRYVLEPVAKGW 62 K L+AL LG L GCA++ +Q R+D LEGFNRTM+ FN+NVLD Y++ PVA W Sbjct: 2 KLRLSALALGTTLLVGCASSGTDQQ--GRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAW 59 Query: 63 NNYVPKPISSGLAGIANNLDEPVSFINRLIEGEPKKAFVHFNRFWINTVFGLGGFIDFAS 122 +YVP+P +GL+ NL+EP +N ++G+P + VHF RF++NT+ G+GGFID A Sbjct: 60 RDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAG 119 Query: 123 -ASKELRIDNQRGFGETLGSYGVDAGTYIVLPIYNATTPRQLTGAVVDAAYMYPFWQWVG 181 A+ +L+ FG TLG YGV G Y+ LP Y + T R G + DA +YP W+ Sbjct: 120 MANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADA--LYPVLSWLT 177 Query: 182 GPWALVKYGVQAVDGRAKNLNNAELLRQAQDPYITFREAYYQNLQFKVNDGKLVESK--- 238 P ++ K+ ++ ++ RA+ L++ LLRQ+ DPYI REAY+Q F N G+L + Sbjct: 178 WPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGELKPQENPN 237 Query: 239 -ESLPDDILKDID 250 +++ DD LKDID Sbjct: 238 AQAIQDD-LKDID 249
>PF01206#SirA family protein Length = 76 Score = 90.2 bits (224), Expect = 5e-28 Identities = 24/71 (33%), Positives = 42/71 (59%) Query: 8 QTLNTLGLRCPEPVMLVRKNIRHLNDGEILLIIADDPATTRDIPSFCQFMDHTLLQSEVE 67 Q+L+ GL CP P++ +K + +N GE+L ++A DP + +D SF + H LL+ + E Sbjct: 6 QSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKEE 65 Query: 68 KPPFKYWVKRG 78 + + +KR Sbjct: 66 DGTYHFRLKRA 76
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.1 bits (140), Expect = 8e-13 Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 1 MRQAKTDLAEQIFSATDRLMAREGLNQLSMHKLAKEANVAAGTIYLYFKNKDELLEQFAH 60 +Q + + I RL +++G++ S+ ++AK A V G IY +FK+K +L + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 RVFSMFMATLEKDFDET 77 S + + Sbjct: 65 LSESNIGELELEYQAKF 81
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.5 bits (126), Expect = 1e-09 Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 90 GAVSQVLVQNGQNVKKGEVLVELDSSVERANLQAAQAQLSALRQTYQRYVGLLNS 144 V +++V+ G++V+KG+VL++L + A+ Q+ L R RY L S Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRS 159 Score = 44.4 bits (105), Expect = 5e-07 Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 39/216 (18%) Query: 118 RANLQAAQAQLSALRQTYQRYVGLLNSNAVSRQEMDNAKAAYDAQVASIESLKAAIERRK 177 + + +A+ + + Q ++ + ++ + + + Sbjct: 279 ESEILSAKEEYQLVTQLFKNEI---------LDKLRQTTDNIGLLTLELAKNEERQQASV 329 Query: 178 IVAPFDGKAGIVKVN-VGQYVNVGT---EIVRVEDTSSMKVDFALSQNDLDKLHIGQRVT 233 I AP K +KV+ G V IV +DT ++V + D+ +++GQ Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDT--LEVTALVQNKDIGFINVGQNAI 387 Query: 234 ATTDARLGKTFSARITAIEPAINSSTGLVDVQATFDPEDGHKLLSGMFSRLRIALPTETN 293 +A F + +++ A D G + I++ Sbjct: 388 IKVEA-----FPYTRY---GYLVGKVKNINLDAIEDQRLGL------VFNVIISIEENCL 433 Query: 294 QVVVPQVAISYNMYGE----------IAYLLEPLSE 319 + +S M I+YLL PL E Sbjct: 434 STGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEE 469
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 896 bits (2316), Expect = 0.0 Identities = 323/1044 (30%), Positives = 537/1044 (51%), Gaps = 48/1044 (4%) Query: 5 DIFIRRPVLAVSISLLMIILGLQAISKLAVREYPKMTTTVITVSTAYPGADANLIQAFVT 64 + FIRRP+ A +++++++ G AI +L V +YP + ++VS YPGADA +Q VT Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 SKLEESIAQADNIDYMSSTSAPS-SSTITIKMKLNTDPAGALADVLAKVNAVKSALPNGI 123 +E+++ DN+ YMSSTS + S TIT+ + TDP A V K+ LP + Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 EDPSVSSS-SGGSGIMYISFRSKKLDSSQ--VTDYINRVVKPQFFTIEGVAEVQVFGAAE 180 + +S S S +M F S ++Q ++DY+ VK + GV +VQ+FGA + Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-Q 181 Query: 181 YALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDN------GYYVSYRNKVETTTK 234 YA+RIWLD + L+ V++ L N Q AAG G ++ +T K Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 235 SVEQLSNLIISSNGD-DLVRLRDIATVELNKENDNSRATANGAESVVLAINPTSTANPLT 293 + E+ + + N D +VRL+D+A VEL EN N A NG + L I + AN L Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 294 VAEKIRPLYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIGS 353 A+ I+ ++ P M+ YD T + SIHEV+KT+ EA ++V +V+ +F+ + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 354 FRAILIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENIDRHIK 413 RA LIP +A+P+ L+G +L +F +SIN +T+ ++LAIGL+VDDAIVV+EN++R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 414 AGETPFRAAII-GTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFIS 472 + P + A +I ++ + + L AV+ PMA GG TG ++++F++T+ A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 473 GVVALTLSPMMSSKLLKSNAKP---------TWMEERVEHTLGKVNRVYEYMLDLVMLNR 523 +VAL L+P + + LLK + W +H+ VN + ++ Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHS---VNHYTNSVGKILGSTG 538 Query: 524 KSMLAFAVVIFSTLPFLFNSLSSELTPNEDKGAFIAIGNAPSSVNVDYIQNAMQP----Y 579 + +L +A+++ + LF L S P ED+G F+ + P+ + Q + Y Sbjct: 539 RYLLIYALIVAGMV-VLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYY 597 Query: 580 MKNVMETPEVSF---GMSIAGAPTSNSSLNIITLKDWKERSRK---QSAIMNEINEKAKS 633 +KN E F G S +G N+ + ++LK W+ER+ A+++ + Sbjct: 598 LKNEKANVESVFTVNGFSFSG-QAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGK 656 Query: 634 IPEVSVSAFNIPEIDTG--EQGPPVSIVLKTAQDYKSLANTAEKFLS-AMKASGKFIYTN 690 I + V FN+P I G ++ + + +L + L A + + Sbjct: 657 IRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 691 LDLTYDTAQMTISVDKEKAGTYGITMQQISSTLGSFLSGATITRVDVDGRAYKVISQVKR 750 + DTAQ + VD+EKA G+++ I+ T+ + L G + GR K+ Q Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 751 DDRLSPESFQNYYLTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGTSS 810 R+ PE Y+ ++NG+ VP S+ + L R++ L S EI PGTSS Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 811 GDAIAWLQQHATDNLPQGYTFDFKSEARQLVQEGNALAVTFALAVIIIFLVLAIQFESIR 870 GDA+A ++ LP G +D+ + Q GN A++ +++FL LA +ES Sbjct: 837 GDAMALMEN-LASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895 Query: 871 DPMVIMISVPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAK 930 P+ +M+ VPL + G L++ + ++Y VGL+T +GL K+ IL+ E AK Sbjct: 896 IPVSVMLVVPLGIVGVLLAAT------LFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 931 EEQL-NGKTRIEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAG 989 + GK +EA A ++RLRPILMT+ A + G++PL + GAG+ ++ ++GI ++ G Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 990 LSIGTIFTLFVLPVVYSYVATEHK 1013 + T+ +F +PV + + K Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRCFK 1033
>PF04647#Accessory gene regulator B Length = 212 Score = 31.3 bits (71), Expect = 0.003 Identities = 8/41 (19%), Positives = 15/41 (36%) Query: 2 AHRDFAARRSSNNKKKNKKKNTNVLIFLALFIVLVFVVGLY 42 D SN +++ K ++ + LF + LY Sbjct: 122 VPVDNPRNLISNTEQRKTLKLKTSMVLMVLFGGSIGAYRLY 162
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 80.6 bits (199), Expect = 1e-18 Identities = 57/415 (13%), Positives = 121/415 (29%), Gaps = 101/415 (24%) Query: 25 SIFILLLLIIGIACALYWFFFLKDFEETEDAYVGGNQVMVSSQV-------AGNVAKINA 77 + ++ + A + E ++ S + V +I Sbjct: 57 PRLVAYFIMGFLVIAFILSVL----GQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIV 112 Query: 78 DNMDKVHAGDILVELDDTNAKLSFEQAKSNLANA----------VRQIEQLGFTV----- 122 + V GD+L++L A+ + +S+L A R IE Sbjct: 113 KEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPD 172 Query: 123 ----QQLQSAVHANEISLAQAQGNLARRVQLEKMGAIDK---------ESFQHAKEAVEL 169 Q + SL + Q + + + +K +DK + + Sbjct: 173 EPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRV 232 Query: 170 AKANLNA----------SKNQLAANQALL------RNVPLREQPQIQNAMSSLKQ----- 208 K+ L+ +K+ + + V + QI++ + S K+ Sbjct: 233 EKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLV 292 Query: 209 ----------------------------AWLNLQRTKIRSPIDGYVARRNVQ-VGQAVSV 239 Q + IR+P+ V + V G V+ Sbjct: 293 TQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT 352 Query: 240 GGALMAVV-SNEQMWLEANFKETQLTNMRIGQPVKIHFDLYGKNK--EFDGVINGIEMGT 296 LM +V ++ + + A + + + +GQ I + + + G + I + Sbjct: 353 AETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA 412 Query: 297 GNAFSLLPSQNATGNWIKVVQRVPVRIKLDPQQFTETPLRIGLSATAKVRISDSS 351 G V+ + + PL G++ TA+++ S Sbjct: 413 -------IEDQRLGLVFNVIISIEENCLSTGNK--NIPLSSGMAVTAEIKTGMRS 458
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 37.5 bits (87), Expect = 6e-05 Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 22/133 (16%) Query: 129 IPVINENDAVATAEIKVGDNDNLSALVAILVQAEQLYLLTDQQGLFDSDPRKNSEAKLIP 188 +PVI E+ + E V D D +A V A+ +LTD G E L Sbjct: 197 VPVILEDGEIKGVE-AVIDKDLAGEKLAEEVNADIFMILTDVNGAA-LYYGTEKEQWLRE 254 Query: 189 V-VEQITDHIRSIAGGSGTNLGTGGMMTKIIAADVATRSGIETIIAPGNRPNVIADL--- 244 V VE++ + + G M K++AA G +IA L Sbjct: 255 VKVEELRKYYEE------GHFKAGSMGPKVLAAIRFIEW--------GGERAIIAHLEKA 300 Query: 245 --AYEQNIGTKFI 255 A E GT+ + Sbjct: 301 VEALEGKTGTQVL 313 Score = 33.6 bits (77), Expect = 8e-04 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Query: 3 KKTIVVKFGTSTLTQGSPKLNSPHMMEIVR----QIAQLHNDGFRIVIV 47 K +V+ G + L Q K + MM+ VR QIA++ G+ +VI Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVIT 50
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 28.7 bits (64), Expect = 0.003 Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 8/68 (11%) Query: 12 VNITDVLEQSPFAKIMKK---GLAINELNQ-KFNRIFPQEFHGKFRIGNITDHLIFIEV- 66 + + ++ F +++K I +++Q +RI +F +G + + + IE+ Sbjct: 64 LTKPNPIKAPMFCMVLRKYISNAKIVDIHQINQDRIVVIDFESTDELGFNSIYSLIIEIM 123 Query: 67 ---SNAIV 71 SN + Sbjct: 124 GRHSNMTL 131
>PF06580#Sensor histidine kinase Length = 349 Score = 26.4 bits (58), Expect = 0.023 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 53 KVAREVQRQAIPQPSISRQTEK---QLKIQPHFFTEALN-ISAPIRAGP 97 K ++ + S++++ + + +I PHF ALN I A I P Sbjct: 142 KNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDP 190
>SECA#SecA protein signature. Length = 901 Score = 1328 bits (3438), Expect = 0.0 Identities = 613/897 (68%), Positives = 728/897 (81%), Gaps = 1/897 (0%) Query: 1 MSILTRIFGSRNERVLRKLKKQVVKINKMEPAFEALSDDELKAKTQEFRDRLSGGETLQQ 60 + +LT++FGSRN+R LR+++K V IN MEP E LSD+ELK KT EFR RL GE L+ Sbjct: 3 IKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLEN 62 Query: 61 ILPEAFATVREASKRVLGMRHFDVQLIGGMVLTNRCIAEMRTGEGKTLTATLPCYLIALE 120 ++PEAFA VREASKRV GMRHFDVQL+GGMVL RCIAEMRTGEGKTLTATLP YL AL Sbjct: 63 LIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALT 122 Query: 121 GKGVHVVTVNDYLARRDAETNRPLFEFLGMSVGVNIPGLSPEEKREAYAADITYATNSEL 180 GKGVHVVTVNDYLA+RDAE NRPLFEFLG++VG+N+PG+ KREAYAADITY TN+E Sbjct: 123 GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEY 182 Query: 181 GFDYLRDNLAHSKEERFQRTLGYALVDEVDSILIDEARTPLIISGQAEKSSELYIAVNKL 240 GFDYLRDN+A S EER QR L YALVDEVDSILIDEARTPLIISG AE SSE+Y VNK+ Sbjct: 183 GFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKI 242 Query: 241 IPSLIKQEKEDTEEYQGEGDFTLDLKSKQAHLTERGQEKVEDWLIAQGLMPEGDSLYSPS 300 IP LI+QEKED+E +QGEG F++D KS+Q +LTERG +E+ L+ +G+M EG+SLYSP+ Sbjct: 243 IPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPA 302 Query: 301 RIVLLHHVMAALRAHTLFEKDVDYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEG 360 I+L+HHV AALRAH LF +DVDYIVKDGE++IVDEHTGRTM GRRWSDGLHQA+EAKEG Sbjct: 303 NIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEG 362 Query: 361 VDIKSENQTVASISYQNYFRLYERLAGMTGTADTEAFEFQQIYGLETVVIPTNRPMIRDD 420 V I++ENQT+ASI++QNYFRLYE+LAGMTGTADTEAFEF IY L+TVV+PTNRPMIR D Sbjct: 363 VQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKD 422 Query: 421 RTDVMFENEQYKFNAIIEDIKDCVERQQPVLVGTISVEKSEELSKALDKAGIKHNVLNAK 480 D+++ E K AIIEDIK+ + QPVLVGTIS+EKSE +S L KAGIKHNVLNAK Sbjct: 423 LPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAK 482 Query: 481 FHQQEAEIVAEAGFPSAVTIATNMAGRGTDIILGGNWKAQAAKLENPTQEQIEALKAEWE 540 FH EA IVA+AG+P+AVTIATNMAGRGTDI+LGG+W+A+ A LENPT EQIE +KA+W+ Sbjct: 483 FHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQ 542 Query: 541 KNHEIVMKAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDGLMRIYLNEG 600 H+ V++AGGLHIIGTERHESRRIDNQLRGRSGRQGD GSSRFYLS+ED LMRI+ ++ Sbjct: 543 VRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDR 602 Query: 601 KRNLMRKAFTVAGEAMESKMLAKVIASAQAKVEAFHFDGRKNLLEYDDVANDQRHAIYEQ 660 +MRK GEA+E + K IA+AQ KVE+ +FD RK LLEYDDVANDQR AIY Q Sbjct: 603 VSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQ 662 Query: 661 RNYLLDNDDISETINAIRHDVFNGVIDQYIPPQSLEEQWDIKGLEERLSQEFGMELPISN 720 RN LLD D+SETIN+IR DVF ID YIPPQSLEE WDI GL+ERL +F ++LPI+ Sbjct: 663 RNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAE 722 Query: 721 WLEEDNNLHEESLRERIVEIAEKEYKEKEALVGEDAMHHFEKGVMLQTLDELWKEHLASM 780 WL+++ LHEE+LRERI+ + + Y+ KE +VG + M HFEKGVMLQTLD LWKEHLA+M Sbjct: 723 WLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAM 782 Query: 781 DYLRQGIHLRGYAQKDPKQEYKKESFRMFTEMLDSLKHHVIMTLTRVRVRTQEEMEEAEL 840 DYLRQGIHLRGYAQKDPKQEYK+ESF MF ML+SLK+ VI TL++V+VR EE+EE E Sbjct: 783 DYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQ 842 Query: 841 ARQEMATRINQ-NNLPVDENSQTTQNSETEDYSDRRIGRNEPCPCGSGKKYKHCHGS 896 R+ A R+ Q L ++ + +R++GRN+PCPCGSGKKYK CHG Sbjct: 843 QRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGR 899
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 30.2 bits (68), Expect = 0.007 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 68 AKVIGTDLSEKMLEQAEKDLQKCGQFSARF-SLYHLPMEKLAELPESHFDVITSSFAFHY 126 AK I LS K E + +++ + L +K ++P ++TS AF Y Sbjct: 151 AKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKY 210 Query: 127 IEN 129 Sbjct: 211 FSK 213
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 98.7 bits (246), Expect = 6e-26 Identities = 78/348 (22%), Positives = 130/348 (37%), Gaps = 68/348 (19%) Query: 2 IIVTGGAGFIGSNIVKALNDLGRKDILVVDNLKD--------------GTKFANLVDLDI 47 +VTG AGFIG ++ K L + G ++ +DNL D +D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 48 ADYCDKEDFIASIIAGDEFGDIDAVFHEGACSATTEWDGKYIMHNNYEYSK-------EL 100 AD + + + A F + VF A +Y + N + Y+ + Sbjct: 62 ADR----EGMTDLFASGHF---ERVFISPHRLAV-----RYSLENPHAYADSNLTGFLNI 109 Query: 101 LHYCLDREIP-FFYASSAATYGDTKV--FREEREFEGPLNVYGYSKFLFDQYVRNILPEA 157 L C +I YASS++ YG + F + + P+++Y +K + Sbjct: 110 LEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY 169 Query: 158 KSPVCGFRYFNVYGPRENHKGSMASVAFHLNNQILKGENPKLFAGSEGFRRDFVYVGDVA 217 P G R+F VYGP + MA F +L+G++ ++ +RDF Y+ D+A Sbjct: 170 GLPATGLRFFTVYGPWG--RPDMA--LFKFTKAMLEGKSIDVY-NYGKMKRDFTYIDDIA 224 Query: 218 AVNI------------WCWQNGISG-------IYNLGTGNAESFRAVADAVVKFHG-KGE 257 I W + G +YN+G + A+ G + + Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284 Query: 258 IETIPFPEHLKSRYQEYTQADLTKLRS-TGYDKPFKTVAEGVAEYMAW 304 +P T AD L G+ P TV +GV ++ W Sbjct: 285 KNMLPLQPG----DVLETSADTKALYEVIGF-TPETTVKDGVKNFVNW 327
>SECA#SecA protein signature. Length = 901 Score = 27.9 bits (62), Expect = 0.022 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 11/37 (29%) Query: 67 TSPA-INSLANEGYQVVSVALRSGNEADVNDYLSKHD 102 T PA +N+L +G VV+V NDYL++ D Sbjct: 113 TLPAYLNALTGKGVHVVTV----------NDYLAQRD 139
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.5 bits (87), Expect = 1e-04 Identities = 39/178 (21%), Positives = 58/178 (32%), Gaps = 53/178 (29%) Query: 194 DLTDIIGQ----QHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLPEMTDLEAIE 249 D ++G+ Q R L L+ G GTGK ++A A+ Sbjct: 135 DGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVA-------------RALH 181 Query: 250 TASVTSLVQNELNFHNWKQRPFRAPHHSASMP------ALVG-------GGTIPKPGEIS 296 + PF A + A++P L G G G Sbjct: 182 DYG------------KRRNGPFVAI-NMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFE 228 Query: 297 LATNGVLFLDEL----PEFERKVLDALRQPLESGEIIISRANAKIQFPARFQLVAAMN 350 A G LFLDE+ + + ++L L+ GE I+ R +VAA N Sbjct: 229 QAEGGTLFLDEIGDMPMDAQTRLLRV----LQQGEYTTVGGRTPIRSDVR--IVAATN 280
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.011 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 54 VVGESGCGKSTLARAI 69 + GESG GK +ARA+ Sbjct: 165 ITGESGTGKELVARAL 180