>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 156 bits (396), Expect = 6e-49 Identities = 119/256 (46%), Positives = 168/256 (65%), Gaps = 1/256 (0%) Query: 1 MFSVTYAQLNGWLTAFLWPFVRMLALVATAPVVGHAAVPVRVKIGIAAFMALVVAPTLGA 60 M VT Q WL + WP +R+LAL++TAP++ +VP RVK+G+A + +AP+L A Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 MPDVTVFSAPGIWIVVTQFLIGIALGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSN 120 DV VFS +W+ V Q LIGIALGFTMQ FAAV AG+ IGL MGL FATF DP S+ Sbjct: 61 -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 GATPVMGRFLNAIAMLAFLAVDGHLQVFAALAASFQTLPVSGDLLHAPGWRTLAAFGATV 180 PV+ R ++ +A+L FL +GHL + + L +F TLP+ G+ L++ + L G+ + Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 181 FEMGLLLALPVVAALLIANLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPF 240 F GL+LALP++ LL NLALG+LNR APQ+ IF IGFP+T+ VG+ L+ ++P + PF Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 Query: 241 VSHLFDMGLDAMGRVL 256 HLF + + ++ Sbjct: 240 CEHLFSEIFNLLADII 255
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 65.9 bits (161), Expect = 4e-18 Identities = 28/85 (32%), Positives = 44/85 (51%) Query: 4 EQVMTLAHQAMMVGLLLAAPLLLVALAVGLVVSLFQAATQINESTLSFIPKLLAVAATLV 63 + ++ ++A+ + L+L+ +VA +GL+V LFQ TQ+ E TL F KLL V L Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 IAGPWMLTTMLDYLRQTLLHVATLG 88 + W +L Y RQ + G Sbjct: 62 LLSGWYGEVLLSYGRQVIFLALAKG 86
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 289 bits (742), Expect = e-101 Identities = 153/247 (61%), Positives = 196/247 (79%), Gaps = 4/247 (1%) Query: 6 LRRAARFAPALILGLAPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPA 65 +RR AP L+ + P A LP + P P GG ++SL VQT++ +T L+F+PA Sbjct: 1 MRRLLSVAPVLLWLITPLAF----AQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPA 56 Query: 66 MLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPF 125 +LLMMTSFTRIIIV LLR ALGT + PPNQVL+GLA+FLTFF+MSPV+D+ Y D Y+PF Sbjct: 57 ILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPF 116 Query: 126 SDGSMPMEQAVRRGVAPFKTFMLKQTRETDLALFAKISKAAPMQGPEDVPLSLLVPAFVT 185 S+ + M++A+ +G P + FML+QTRE DL LFA+++ P+QGPE VP+ +L+PA+VT Sbjct: 117 SEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVT 176 Query: 186 SELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLI 245 SELKT FQIGFTIFIPFLIID+V+ASVLM++GMMMV P+T++LPFKLMLFVLVDGWQLL+ Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 246 GSLAQSF 252 GSLAQSF Sbjct: 237 GSLAQSF 243
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 133 bits (335), Expect = 7e-43 Identities = 75/132 (56%), Positives = 98/132 (74%), Gaps = 3/132 (2%) Query: 31 AAQEDQGLDD-WAAALAEQNLQPVQAGATGAGVFQPLSKAAASSTHNDIEMILDIPVKMT 89 + + LDD WA AL EQ ++ A VFQ L S DI++I+DIPVK+T Sbjct: 8 SDENTGALDDLWADALNEQKATTTKSAADA--VFQQLGGGDVSGAMQDIDLIMDIPVKLT 65 Query: 90 VELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDI 149 VELGRT++ I+ LL+L QGSVV LDG+AGEP+D+L+NG LIAQGEVVVV DK+G+R+TDI Sbjct: 66 VELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125 Query: 150 ITPAERIRKLNR 161 ITP+ER+R+L+R Sbjct: 126 ITPSERMRRLSR 137
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 272 bits (697), Expect = 4e-92 Identities = 80/324 (24%), Positives = 158/324 (48%), Gaps = 10/324 (3%) Query: 5 EFMSQEEVDALLKGV-TGETDTVDEQ--RDLSSVRPYNIATQERIVRGRMPGLEIINDRF 61 E +SQ+E+D LL + +G+ D + D + Y+ ++ + +M L ++++ F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 62 ARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPN 121 ARL + +R + V+ V Y EF R++P P+ L ++ + PL+G ++ DP+ Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 122 LVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYATAWKSVRPLQFEFVR 181 + F ++D LFGG G+ RD T E ++ ++ + + +W V L+ + Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQ 180 Query: 182 SEMHTQFANVATPNEIVIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEAL-- 239 E + QFA + P+E+V++ + G G ++ C+PY IEPI LSS ++ Sbjct: 181 IETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240 Query: 240 EVDRRWVRVLSQQVQSAEVELSANLAEIPSTFEKILNLRAGDVLPLE---IEDTITAKVD 296 +++ VL ++ + ++++ A + + + IL LR GD++ L + D + Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300 Query: 297 GVPVMECGYGIFNGQYALRVQKMI 320 C G+ + A ++ + I Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERI 324
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 120 bits (303), Expect = 1e-31 Identities = 84/398 (21%), Positives = 161/398 (40%), Gaps = 16/398 (4%) Query: 30 LALGTFMEVLDTSIANVAVPTISGSLGVATSEGTWVISSYSVASAIAVPLTGWLARRVGE 89 L + +F VL+ + NV++P I+ + WV +++ + +I + G L+ ++G Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 90 VRLFTLSVLAFTIASALCGLA-SNFETLIAFRLLQGLVSGPMVPLSQTILMRSYPPAKRG 148 RL ++ S + + S F LI R +QG + L ++ R P RG Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138 Query: 149 LALGLWAMTVIVAPIFGPLLGGWISDNYTWPWIFYINLPIGIFSAACAYFLLRGRETKTS 208 A GL V + GP +GG I+ W ++ I + I L ++ Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLL---KKEVRI 195 Query: 209 RQRIDAVGLALLVIGVSCLQMMLDLGKDRDWFNSTFIVALALIAVVSLAFMLVWEATEKE 268 + D G+ L+ +G+ + F +++ ++ +++V+S + + Sbjct: 196 KGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTD 245 Query: 269 PVVDLSLFKDRNFALGALIISFGFMAFFGSVVIFPLWLQTVMGYTAGKAGLATA-PVGLL 327 P VD L K+ F +G L F G V + P ++ V + + G P + Sbjct: 246 PFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMS 305 Query: 328 ALVLSPLIGRNMHRLDLRMVASFAFIVFAGVSVWNSTFTLDVPFNHVILPRLVQGIGVAC 387 ++ + G + R V + + F VS ++F L+ + + + G++ Sbjct: 306 VIIFGYIGGILVDRRGPLYVLNIG-VTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF 364 Query: 388 FFVPMTTITLSSISDERLASASGLSNFLRTLSGAIGTA 425 ++TI SS+ + + L NF LS G A Sbjct: 365 TKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIA 402
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 26.8 bits (59), Expect = 0.035 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%) Query: 5 ATIARPYAEALFRVAEGGDIAAWSTLVQELAQVARLPEVLSVASSPKVTRTQVVELLLAA 64 AT + A+A+F+ GGD+ S +Q++ + +P L+V TR + ELL Sbjct: 28 ATTTKSAADAVFQQLGGGDV---SGAMQDIDLIMDIPVKLTVELGR--TRMTIKELLRLT 82 Query: 65 VKSPVAAGAEAKNFVQMLVDNHRIA 89 S VA A + +L++ + IA Sbjct: 83 QGSVVALDGLAGEPLDILINGYLIA 107
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 68.5 bits (167), Expect = 7e-15 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 38/183 (20%) Query: 116 NLGSGVIVSPEGYILTNQHVVDGADQIEVALA------------DGRTATAKVIGSDPET 163 + SGV+V +LTN+HVVD AL +G ++ E Sbjct: 102 FIASGVVVGK-DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEG 160 Query: 164 DLAVLKIN--------MTNLPTITLGRSDQSRVGDVVLAIGNPFGVGQTVTMGIISALGR 215 DLA++K + + T+ + +++V + G P ++ + Sbjct: 161 DLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD-------KPVATMWE 213 Query: 216 NHLGINTFEN-FIQTDAPINPGNSGGALVDVNGNLLGINTAIYSRSGGSLGIGFAIPVST 274 + I + +Q D GNSG + + ++GI+ G+ + Sbjct: 214 SKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFNGAV 264 Query: 275 ART 277 Sbjct: 265 FIN 267
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 39.2 bits (91), Expect = 1e-04 Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 25/142 (17%) Query: 915 SPEAAQAAASGQLASQLQGMAPAATTA---AMGLASGGSAGAVLGGLASSALPAAASALG 971 + +AAA +L +++ G + A A G S A GL +SA+ A S L Sbjct: 263 ADTRTKAAAGVELTTKVLGNVGKGISQYIIAQRAAQGLSTSAAAAGLIASAVTLAISPLS 322 Query: 972 GAGVVSALRTASSLSGAAKQV-----------------AGMVQAARQG---GLAALAAPA 1011 + + A+ + +++ G + A+ LA++++ Sbjct: 323 FLSIADKFKRANKIEEYSQRFKKLGYDGDSLLAAFHKETGAIDASLTTISTVLASVSSGI 382 Query: 1012 ANAASGALQGALPG--VAGISG 1031 + AA+ +L GA V ++G Sbjct: 383 SAAATTSLVGAPVSALVGAVTG 404
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.0 bits (73), Expect = 0.005 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 18/84 (21%) Query: 19 RQADVFVADGKIAALAPAG--------TAPAGFNAEKTIDASGLIVAPGLVDLCARLREP 70 +AD+ + DG+IAA+ AG T G E I G IV G +D P Sbjct: 84 VKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTE-VIAGEGKIVTAGGMDSHIHFICP 142 Query: 71 GYEHKATLASEMAAAVAGGVTTLV 94 ++ A+ G+T ++ Sbjct: 143 ---------QQIEEALMSGLTCML 157
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 97.5 bits (243), Expect = 2e-25 Identities = 70/343 (20%), Positives = 120/343 (34%), Gaps = 63/343 (18%) Query: 7 SVLITGAGGVIGHALKQELADSGYSNVVAITSSD------------------------ID 42 L+TGA G IG + + L ++G+ VV I + + ID Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 43 LRDQSATEKMFDELRPTIVFHMAARVYGIMGNMSNRGIAYLD-NVRINTNVVEAARQTGC 101 L D+ +F VF R+ + ++ N AY D N+ N++E R Sbjct: 61 LADREGMTDLFASGHFERVFISPHRL-AVRYSLEN-PHAYADSNLTGFLNILEGCRHNKI 118 Query: 102 KKFVAMGSTAIYSDQVRLPMSEEQIWVGAPHHSEAPYAHSKRGMLAQLEAYKDQYGMDYA 161 + + S+++Y ++P S + H + YA +K+ Y YG+ Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDS----VDHPVSLYAATKKANELMAHTYSHLYGLPAT 174 Query: 162 FCVSTNLFGPHDKFDEKFGHVIPSLVSKFYRASVLGQPISVWGSGKAERDFLFSGDAAYA 221 ++GP + D KF +A + G+ I V+ GK +RDF + D A A Sbjct: 175 GLRFFTVYGPWGRPDMAL--------FKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEA 226 Query: 222 LRLIAENHTGA--------------------INLATGQSHTIRHTVDTLCQISGFSGSVE 261 + + + A N+ + + L G Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKN 286 Query: 262 WDATKPDGQKLRAY-DISRL-TALGFKPRFSFDEALAITYDWY 302 +P G L D L +GF P + + + +WY Sbjct: 287 MLPLQP-GDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWY 328
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.4 bits (110), Expect = 1e-07 Identities = 20/159 (12%), Positives = 66/159 (41%), Gaps = 10/159 (6%) Query: 223 FDGFIRASESDMIRRAMDLEQQLIESRKQLQEAHEGWSLEKGAREELEVRLNSMTDRAHD 282 F SE +++R +++Q + Q + + ++ ++ R + Sbjct: 173 EPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK-------ELNLDKKRAERLTVLARINR 225 Query: 283 EQASQVVLKDSSQDC--VVQNSKISQNEIEQLKARVAASEGDLESHRAQLAELRTRLTES 340 + V K D ++ I+++ + + + + + +L +++QL ++ + + + Sbjct: 226 YENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA 285 Query: 341 E-KSAQVLSTERDTAYQELFESSRHAAWLSQERVRLQER 378 + + V ++ +L +++ + L+ E + +ER Sbjct: 286 KEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEER 324
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 176 bits (449), Expect = 9e-55 Identities = 90/350 (25%), Positives = 135/350 (38%), Gaps = 43/350 (12%) Query: 2 ILVTGGAGFIGANFVLDWLRHDVEPVLNVDKLT--YAGNLRTL-QSLSGNPKHVFARVDI 58 LVTG AGFIG + L V+ +D L Y +L+ L P F ++D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 59 CDRAALDALFAEHKPRAVAHFAAESHVDRSIHGPADFVQTNVVGTFTLLEAARSYWSGLN 118 DR + LFA V V S+ P + +N+ G +LE R Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ-- 119 Query: 119 DADKAGFRFLHVSTDEVFGSLSPTDPQFSETTPYA-PNSPYSATKAGSDHLVRAYHHTYG 177 L+ S+ V+G L+ P FS P S Y+ATK ++ + Y H YG Sbjct: 120 -------HLLYASSSSVYG-LNRKMP-FSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 178 LPTLTTNCSNNYGPYQFPEKLIPLMIANALAGKPLPIYGDGQNVRDWLYVGDHCSAIREV 237 LP YGP+ P+ + L GK + +Y G+ RD+ Y+ D AI + Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230 Query: 238 L------------------ARGVPGETYNVGGWNEKKNLDVVHTLCDLLDSASPKAAGSY 279 A P YN+G + + +D + L D L +A + Sbjct: 231 QDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG---IEAKKNM 287 Query: 280 RDQITYVTDRPGHDRRYAIDARKLERELGWKPAETFETGLAKTVRWYLDN 329 +PG + D + L +G+ P T + G+ V WY D Sbjct: 288 LPL------QPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 49.0 bits (117), Expect = 7e-09 Identities = 48/212 (22%), Positives = 72/212 (33%), Gaps = 61/212 (28%) Query: 10 TILVTGVTGQIGFELLRALQGLG-RVVPCD--------------RSVL----------DL 44 LVTG G IGF + + L G +VV D +L DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 45 ADLDRVRAFARDLKPALIVNPAAYTAVDTAESEVELARRLNVDVPRVFAE---------- 94 AD + + + AV R +++ P +A+ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAV-----------RYSLENPHAYADSNLTGFLNIL 110 Query: 95 EAARSGG--TLIHYSTDYVF-DGTKVGAYVETDAPNPLNAYGATKLEGEQAIAAT----- 146 E R L++ S+ V+ K+ + +P++ Y ATK E +A T Sbjct: 111 EGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANEL-MAHTYSHLY 169 Query: 147 GCAHVILRTSWVYGRRGR------NFLRTMLK 172 G LR VYG GR F + ML+ Sbjct: 170 GLPATGLRFFTVYGPWGRPDMALFKFTKAMLE 201
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.9 bits (75), Expect = 0.003 Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 23/159 (14%) Query: 175 FARVKQLRLQEPPALHEAGARIRLLDVLGGVSPDYAIVAQKSCSEAEAGLFDEAFHEDYG 234 AR++Q R Q L + +L ++ P + V SE E E + Sbjct: 145 QARLEQTRYQ---ILSRSIELNKLPELKLPDEPYFQNV-----SEEEVLRLTSLIKEQFS 196 Query: 235 LSLAELAARFDAGAARQHEHAAEQIQRTQAEVRRLHGELGVIHEELTR----------TR 284 + + ++ E A + R V L + Sbjct: 197 TWQNQKYQKELNLDKKRAE-----RLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 285 SELTQAVDELGQVRRDLGRVRSDLGQVNGELKRVHDEAQ 323 + + ++ + +L +S L Q+ E+ +E Q Sbjct: 252 HAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ 290
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 97.2 bits (242), Expect = 4e-25 Identities = 65/347 (18%), Positives = 121/347 (34%), Gaps = 57/347 (16%) Query: 7 IITGITGQDGAYLAELLLDKGYTVYG-----TYRRTSSVNFWRIEELGIAKHPNLHLVEY 61 ++TG G G ++++ LL+ G+ V G Y S + L + P + Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVS----LKQARLELLAQPGFQFHKI 59 Query: 62 DLTDLSASIRLLQTTGATEVYNLAAQSFVGVSFDQPVTTAEITGVGPLNLLEAIRIVNPK 121 DL D L + V+ + V S + P A+ G LN+LE R + Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 122 IRFYQASTSEMFGKVQAIPQIESTPF-YPRSPYGVAKLYAHWITVNYRESYDIFGCSGIL 180 AS+S ++G + +P +P S Y K + Y Y + Sbjct: 120 -HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 181 FNHESPLRGR-EFVTRKITDSVAKIKLGQLDVLELGNMDAKRDWGFAKEYVEGMWRMLQA 239 F P GR + K T ++ + K +DV G M KRD+ + + E + R+ Sbjct: 179 FTVYGP-WGRPDMALFKFTKAMLEGK--SIDVYNYGKM--KRDFTYIDDIAEAIIRLQDV 233 Query: 240 DEPDT-------------------FVLATNRTETVRDFVRMAFKAAGVDLEFKGSDEQEI 280 + + + + D+++ A G++ + Q Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ-- 291 Query: 281 AVDVATGKTLVRVNPKFHRPAEVDLLIGNPEKAKQKLGWEPKTTLEE 327 P +V + + + +G+ P+TT+++ Sbjct: 292 -------------------PGDVLETSADTKALYEVIGFTPETTVKD 319
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 122 bits (307), Expect = 2e-34 Identities = 75/313 (23%), Positives = 125/313 (39%), Gaps = 42/313 (13%) Query: 11 RALVTGLGGFTGDYLAESLRAAGYRVFGTTHAADTIEPD---------------TYRVDL 55 + LVTG GF G ++++ L AG++V G + D + +++DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 56 CDRPTLADVVAEVQPDIVAHLAAVSFV--AHGDADAIYRTNVVGTRNLLEALANLENRPR 113 DR + D+ A + V V + + A +N+ G N+LE N+ + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR--HNKIQ 119 Query: 114 AVLLASSANIYG-NAAVEIIDESIEPNPANDYAVSKLAMEYMARLWRD--KLPIVIARPF 170 +L ASS+++YG N + + +P + YA +K A E MA + LP R F Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 171 NYTGVGQSPQFLLPKIVGHFQRGERVIELGNIDVERDFSDVRRVADAYRRLLELSPAGG- 229 G P L K G+ + ++RDF+ + +A+A RL ++ P Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADT 239 Query: 230 -----------------VFNVCSGRAVSLKAVISMMERIAGYAIEVRVNPAFVRANDVRR 272 V+N+ + V L I +E G IE + N ++ DV Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG--IEAKKNMLPLQPGDVLE 297 Query: 273 LQGNDARLQAAIG 285 + L IG Sbjct: 298 TSADTKALYEVIG 310
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 114 bits (286), Expect = 2e-31 Identities = 78/341 (22%), Positives = 130/341 (38%), Gaps = 37/341 (10%) Query: 1 MRLVITGANGFVGRAVCRRALDAGHTVTAL----------VRRPGACIDGVREWVHGSAD 50 M+ ++TGA GF+G V +R L+AGH V + +++ + + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 51 WEGLDAAWPADLVA----DCVIHLAARVHVMRDDSPDPDAAFDATNVAGTLRLAEAARKY 106 D DL A + V R+ V R +P A D +N+ G L + E R Sbjct: 61 LA--DREGMTDLFASGHFERVFISPHRLAV-RYSLENPHAYAD-SNLTGFLNILEGCRHN 116 Query: 107 GVRRIVYASSIKAVGESDSGAPLSESWPAD-PQDAYGRSKLRAEQQLARFGTSAGLDVVI 165 ++ ++YASS G + P S D P Y +K E + GL Sbjct: 117 KIQHLLYASSSSVYGLNRK-MPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATG 175 Query: 166 VRPPLVYGPHVTAN--FLRMMDAVARGMPLPL-GSISARRSIVYVDNLADALLQCATDPR 222 +R VYGP + + A+ G + + +R Y+D++A+A+++ Sbjct: 176 LRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIP 235 Query: 223 AAGECFHVADDDAPSVTGLLRLVGDALGKPARLLPVPTAALRALGKLTGRSATIDRLTGS 282 A + V + R+ P L+ ++AL G A + Sbjct: 236 HADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDY----IQALEDALGIEA--KKNMLP 289 Query: 283 LQL--------DTGRIKRVLGWQPPYTTRQGLEATAAWYRS 315 LQ DT + V+G+ P T + G++ WYR Sbjct: 290 LQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 124 bits (314), Expect = 7e-35 Identities = 92/388 (23%), Positives = 142/388 (36%), Gaps = 65/388 (16%) Query: 1 MKKTLIVAALAGVAASAAHAQSSVTLYGLIDAGITYTNNQHGHSAW-----QETSGSING 55 MKK+LI LA + +A + VTLYG I AG+ + + + A T G Sbjct: 1 MKKSLIALTLAALPVAAM---ADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLG 57 Query: 56 SRWGLRGTEDLGGGLKAIFTLENGFGINNGSLKQNGREFGRQAFVGLAHNSFGSLTLGRQ 115 S+ G +G EDLG GLKAI+ +E I + RQ+F+GL FG L +GR Sbjct: 58 SKIGFKGQEDLGNGLKAIWQVEQKASIAGT----DSGWGNRQSFIGLKGG-FGKLRVGRL 112 Query: 116 YDSVVDYLG--PLSLTGTQYGGTQFAHPFDNDNLNNSFRINNSVKYQSANYGGLKFGGLY 173 + D P G + A P + I SV+Y S + GL Y Sbjct: 113 NSVLKDTGDINPWDSKSDYLGVNKIAEP-------EARLI--SVRYDSPEFAGLSGSVQY 163 Query: 174 GFSNSTGFANNRAYSVGASYSYMGFNVAAAYLQLNNNINALALAASDPGAVAGDWTFAAS 233 +++ G N+ +Y G +Y GF V ++ Sbjct: 164 ALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHH--------------QVQENVNIE 209 Query: 234 RQRTWGAGLNYTFGPATAGFVFTQTRLTNSAGISAGQSGVS-TGIPLTGGTRFNNYEVNG 292 + + Y A + + ++ + S S T + T RF N Sbjct: 210 KYQIHRLVSGYD---NDALYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNV---- 262 Query: 293 RYALTPAFSLAGSYTYTDSRLDGQTPSWHQFNLQADYALSKRTDLYLQSEYQRVNTNGLA 352 ++ A GS+ T+ + Q + A+Y SKRT + + + + Sbjct: 263 TPRVSYAHGFKGSFDATNY-----NNDYDQVVVGAEYDFSKRTSALVSAGWLQEG----- 312 Query: 353 IGANINGLGAASSTNKQIAVTAGMRHRF 380 G ST A G+RH+F Sbjct: 313 -----KGESKFVST----AGGVGLRHKF 331
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 25.6 bits (56), Expect = 0.040 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Query: 13 VVGDGTPGPGRKK-GVPN---KMTVEVK-----EMIRQALDEAGGVDYLVERAKDPRTAS 63 V+GD P R++ P + TVE EM+ AL E D L+ D T Sbjct: 326 VLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHE 385 Query: 64 AFLSLVGKV 72 LS +GKV Sbjct: 386 IILSFLGKV 394
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.011 Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 16/152 (10%) Query: 25 VEVGQTIKEDQPLADVMTDKAAVEIPS--PVAGKVLALGGRIGEMMAVGSELIRVEVEGN 82 + I+ D P V ++ + PV A E +A S+ VE N Sbjct: 997 ITTPNNIQADVP--SVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN 1054 Query: 83 GNLKPGTKARDAEADATSRPAAVDTPAKS------SKVTEAAEAHDASKAARHTAERAPA 136 T A++ E ++ + S+ E A E+A Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 137 EPRRTEHAA------APRAALAPGERPLASPA 162 E +T+ +P+ + +P A PA Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.8 bits (106), Expect = 4e-07 Identities = 82/403 (20%), Positives = 136/403 (33%), Gaps = 31/403 (7%) Query: 17 RPGGSATLPLLALAAGAFGIGTTEFSPMGLLPVIADGVHVSIPQA---GMLISAYAIGVM 73 +P + L +A A GIG M +LP + + S G+L++ YA+ Sbjct: 2 KPNRPLIVILSTVALDAVGIGLI----MPVLPGLLRDLVHSNDVTAHYGILLALYALMQF 57 Query: 74 VGAPLMTLLLARWSRRSALIALMSIFTIGNLLSAIAPDYTTLLLARLVTSLNHGAFFGLG 133 AP++ L R+ RR L+ ++ + + A AP L + R+V + G Sbjct: 58 ACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG 117 Query: 134 SVVAAGLVPRERQASAVATMFMGLTIANVGGVPAATWLGQMIGWRMSFAATAALGLIAIA 193 + + A + + +A M V G +G F A AAL + Sbjct: 118 AYI-ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFL 175 Query: 194 GLFAALPKGEAGKMPNLRAELSVLTRPVVLGALATTVLGAGAMF-----------TLYTY 242 LP+ G+ LR E T V A+F L+ Sbjct: 176 TGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVI 235 Query: 243 VAPTLEHVTGATPGFVTAMLVLIGVGFSIGNIAGGRLADRSLDATLIGFLVLLIVTMAGF 302 H T G A ++ + G +A R + + ++ +I G+ Sbjct: 236 FGEDRFHWDATTIGISLAAFGILHSLAQA--MITGPVAARLGERRAL--MLGMIADGTGY 291 Query: 303 PLLARTHVGAAATLLVWGVATFAVVPPLQMRVM--RAAHEAPGLASAVNIGAFNLGNALG 360 LLA G A ++ +A+ + P ++ + E G +L + +G Sbjct: 292 ILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVG 351 Query: 361 AAAGGAAISAGFGYAAVPLVGGLIAAAGLALVALQRMQRRRGA 403 A +A G AG AL L RRG Sbjct: 352 PLLFTAIYAASITTW-----NGWAWIAGAALYLLCLPALRRGL 389
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 30.2 bits (68), Expect = 0.021 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 6/47 (12%) Query: 182 QVDRIVDKVPRVDIPGDRVHFV--VEAGRPFYVEPL----FTRDPAA 222 + +++ V ++ V F ++P+ FTRDP A Sbjct: 121 MISKMISGVVTEELKNYTSSLDDLVNGANLFIIDPMPNVLFTRDPFA 167
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 2e-21 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 5 ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64 ILV +D+ AI +++ L AG+ NA I+ DLV+ D ++P ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL---R 121 ++ + +P+++++A+ + E GA DY+ KPF EL+ I L + Sbjct: 66 LPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 RRAPQLTEDVVSINGL 137 RR +L +D L Sbjct: 124 RRPSKLEDDSQDGMPL 139
>PF06580#Sensor histidine kinase Length = 349 Score = 39.8 bits (93), Expect = 1e-05 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 26/106 (24%) Query: 328 LVTNAIRY----TPDGGKIFVSWRREGAQGVFSVTDSGFGIPAADLPRLTERFYRVDRSR 383 LV N I++ P GGKI + ++ V ++G Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLAL------------------ 304 Query: 384 SRDTGGTGLGLAIVKHVLQR---HDSHLYVQSEEGRGSTFTARFPA 426 TG GL V+ LQ ++ + + ++G+ P Sbjct: 305 KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV-NAMVLIPG 349
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 47.4 bits (112), Expect = 2e-07 Identities = 32/120 (26%), Positives = 47/120 (39%) Query: 547 HDETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTST 606 +D ++ G+ T+T N + G T+T N LT G T +L+ ST Sbjct: 876 YDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGST 935 Query: 607 ETVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 +T L G G T + +AG S G + + G T TAG + L G Sbjct: 936 QTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAG 995 Score = 47.4 bits (112), Expect = 2e-07 Identities = 38/145 (26%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 554 GHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTETVGLAK 613 G+ T T ++ G T+T TL G ++T + +L ST G Sbjct: 915 GYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDS 974 Query: 614 ALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG-SSVLIM 672 +L G G T +AG S + S T G T TAG L G S L Sbjct: 975 SLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTS 1034 Query: 673 ESNGHITLRGTQLLIEGSGPVQING 697 +T LI G V G Sbjct: 1035 GIRSFLTAGYGSTLISGLRSVLTAG 1059 Score = 47.1 bits (111), Expect = 3e-07 Identities = 31/120 (25%), Positives = 47/120 (39%) Query: 547 HDETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTST 606 D ++ G+ T+T + ++ G T+T LT G T +L+ ST Sbjct: 252 DDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGST 311 Query: 607 ETVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 +T G T G G T + +AG S G + + G T TAG+ L G Sbjct: 312 QTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAG 371 Score = 45.9 bits (108), Expect = 5e-07 Identities = 42/160 (26%), Positives = 58/160 (36%), Gaps = 9/160 (5%) Query: 547 HDETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTST 606 D ++ G+ T+T N + G T+T N LT G T +L+ ST Sbjct: 828 ADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGST 887 Query: 607 ETVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 +T G LT G G T + + G S G + + G T TA + L G Sbjct: 888 QTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAG 947 Query: 667 --SSVLIMESNGHITLRGTQL-------LIEGSGPVQING 697 SS E + G+ LI G G Q G Sbjct: 948 YGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAG 987 Score = 45.1 bits (106), Expect = 9e-07 Identities = 32/113 (28%), Positives = 45/113 (39%) Query: 554 GHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTETVGLAK 613 G+ T T ++ ++ G T+T G + +LT G +T Q +L ST T G Sbjct: 243 GYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADS 302 Query: 614 ALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 +L G G T +AG S + G T TAGD L G Sbjct: 303 SLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAG 355 Score = 44.7 bits (105), Expect = 1e-06 Identities = 29/120 (24%), Positives = 49/120 (40%) Query: 547 HDETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTST 606 ++ ++ G+ T+T T+ G ++T +LT G +L+ ST Sbjct: 924 YESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGST 983 Query: 607 ETVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 +T G LT G G T + +AG S G + + G ++T+G R L G Sbjct: 984 QTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAG 1043 Score = 44.7 bits (105), Expect = 1e-06 Identities = 41/154 (26%), Positives = 57/154 (37%), Gaps = 7/154 (4%) Query: 546 DHDETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTS 605 H + G+ TET ++ T+ G T T G + TL G +T + + S Sbjct: 171 THQSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGS 230 Query: 606 TETVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKT 665 T+T LT G G T + AG S + G + G T TA +L Sbjct: 231 TQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTA 290 Query: 666 GSSVLIMESNGHITLRGTQLLIEGSGPVQINGKD 699 G S G T LI G G Q G++ Sbjct: 291 GYG-----STG--TAGADSSLIAGYGSTQTAGEE 317 Score = 44.4 bits (104), Expect = 2e-06 Identities = 32/119 (26%), Positives = 46/119 (38%) Query: 548 DETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTE 607 D ++ G+ T+T T G T+T LT G T +L+ ST+ Sbjct: 301 DSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQ 360 Query: 608 TVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 T G +LT G G T + +AG S G + + G T TAG+ G Sbjct: 361 TAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAG 419 Score = 43.6 bits (102), Expect = 3e-06 Identities = 41/161 (25%), Positives = 55/161 (34%), Gaps = 9/161 (5%) Query: 548 DETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTE 607 D ++ G+ T+T N + G T+T LT G T +L+ ST+ Sbjct: 637 DSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQ 696 Query: 608 TVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG- 666 T G LT G G T + ++G S G + + G T TA L G Sbjct: 697 TAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGY 756 Query: 667 --------SSVLIMESNGHITLRGTQLLIEGSGPVQINGKD 699 SVL T LI G G Q G Sbjct: 757 GSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYH 797 Score = 42.4 bits (99), Expect = 6e-06 Identities = 40/162 (24%), Positives = 56/162 (34%), Gaps = 9/162 (5%) Query: 547 HDETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTST 606 ++ ++ G+ T+T T+ G T+T N L G T +L+ ST Sbjct: 492 YESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGST 551 Query: 607 ETVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 +T LT G G T + +AG S G + + G T TA L G Sbjct: 552 QTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAG 611 Query: 667 ---------SSVLIMESNGHITLRGTQLLIEGSGPVQINGKD 699 SVL T LI G G Q G + Sbjct: 612 YGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYN 653 Score = 42.4 bits (99), Expect = 7e-06 Identities = 32/119 (26%), Positives = 47/119 (39%) Query: 548 DETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTE 607 D ++ G+ T+T + ++ G T+T LT G T +L+ ST+ Sbjct: 589 DSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQ 648 Query: 608 TVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 T G LT G G T + +AG S G + + G T TAG L G Sbjct: 649 TAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAG 707 Score = 42.4 bits (99), Expect = 7e-06 Identities = 31/120 (25%), Positives = 44/120 (36%) Query: 547 HDETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTST 606 + G+ T T + ++ G T+T G + LT G +T Q +L ST Sbjct: 764 EQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGYGSTQTAQERSDLTTGYGST 823 Query: 607 ETVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 T G +L G G T +AG S + + G T TAG L G Sbjct: 824 STAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAG 883 Score = 42.0 bits (98), Expect = 8e-06 Identities = 41/159 (25%), Positives = 60/159 (37%), Gaps = 9/159 (5%) Query: 548 DETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTE 607 D ++ G+ T+T + ++ G T+T LT G T +L+ ST+ Sbjct: 733 DSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQ 792 Query: 608 TVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG- 666 T G LT G G T + + G S G + + G T TAG L G Sbjct: 793 TAGYHSILTAGYGSTQTAQERSDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGY 852 Query: 667 -SSVLIMESNGHITLRGT-------QLLIEGSGPVQING 697 S+ E++ T G+ LI G G Q G Sbjct: 853 GSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAG 891 Score = 42.0 bits (98), Expect = 9e-06 Identities = 29/113 (25%), Positives = 43/113 (38%) Query: 554 GHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTETVGLAK 613 + T + + + G TET G++ TL G T L+ ST+T G Sbjct: 163 TYGSTLSGTHQSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEES 222 Query: 614 ALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 + G G T + +AG S G + + G T TAG+ L G Sbjct: 223 SQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAG 275 Score = 42.0 bits (98), Expect = 9e-06 Identities = 41/155 (26%), Positives = 54/155 (34%), Gaps = 9/155 (5%) Query: 554 GHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTETVGLAK 613 G+ T T + ++ G T+T G N LT G +T Q +L ST T G Sbjct: 819 GYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDS 878 Query: 614 ALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG------- 666 +L G G T +AG S + + G T TAG L G Sbjct: 879 SLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTA 938 Query: 667 --SSVLIMESNGHITLRGTQLLIEGSGPVQINGKD 699 S L+ T R L G G + G D Sbjct: 939 SFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYD 973 Score = 41.3 bits (96), Expect = 1e-05 Identities = 42/161 (26%), Positives = 56/161 (34%), Gaps = 9/161 (5%) Query: 548 DETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTE 607 D ++ G+ T+T T G T+T LT G T +L+ ST+ Sbjct: 397 DSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQ 456 Query: 608 TVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG- 666 T G +LT G G T + +AG S G + + G T TAG L G Sbjct: 457 TAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGY 516 Query: 667 --------SSVLIMESNGHITLRGTQLLIEGSGPVQINGKD 699 S LI T LI G G Q + Sbjct: 517 GSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYN 557 Score = 40.5 bits (94), Expect = 3e-05 Identities = 30/119 (25%), Positives = 45/119 (37%) Query: 548 DETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTE 607 D ++ G+ T+T + ++ G T+T LT G T +L+ ST+ Sbjct: 445 DSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQ 504 Query: 608 TVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 T G LT G G T + G S G + + + G T TA L G Sbjct: 505 TAGYGSTLTAGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAG 563 Score = 40.1 bits (93), Expect = 3e-05 Identities = 31/119 (26%), Positives = 47/119 (39%) Query: 548 DETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTE 607 D ++ G+ T+T + ++ G T+T LT G T +L+ ST+ Sbjct: 349 DSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQ 408 Query: 608 TVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 T G T G G T + +AG S G + + G T TAG+ L G Sbjct: 409 TAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAG 467 Score = 40.1 bits (93), Expect = 3e-05 Identities = 41/161 (25%), Positives = 56/161 (34%), Gaps = 9/161 (5%) Query: 548 DETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTE 607 D T+ G+ T+T + G T+T LT G T +L+ ST+ Sbjct: 205 DSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQ 264 Query: 608 TVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTGS 667 T G +LT G G T + +AG S G + + G T TAG+ G Sbjct: 265 TAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGY 324 Query: 668 SVLIMESNGHITLRG---------TQLLIEGSGPVQINGKD 699 G G LI G G Q G+D Sbjct: 325 GSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGED 365 Score = 40.1 bits (93), Expect = 4e-05 Identities = 31/119 (26%), Positives = 45/119 (37%) Query: 548 DETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTE 607 D ++ G+ T+T + + G T+T LT G T +L+ ST+ Sbjct: 781 DSSLIAGYGSTQTAGYHSILTAGYGSTQTAQERSDLTTGYGSTSTAGADSSLIAGYGSTQ 840 Query: 608 TVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 T G LT G G T + + G S G + + G T TAG L G Sbjct: 841 TAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAG 899 Score = 39.7 bits (92), Expect = 4e-05 Identities = 31/119 (26%), Positives = 44/119 (36%) Query: 548 DETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTE 607 D ++ G+ T+T N + G T+T LT G T +L+ ST+ Sbjct: 685 DSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQ 744 Query: 608 TVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 T +LT G G T + G S G + + G T TAG L G Sbjct: 745 TASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHSILTAG 803 Score = 39.4 bits (91), Expect = 6e-05 Identities = 29/119 (24%), Positives = 44/119 (36%) Query: 548 DETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTE 607 + ++ G+ T+T N + G T+T LT G T +++ ST+ Sbjct: 541 NSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYGSTQ 600 Query: 608 TVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 T +LT G G T + G S G + + G T TAG L G Sbjct: 601 TASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAG 659 Score = 39.4 bits (91), Expect = 6e-05 Identities = 31/113 (27%), Positives = 43/113 (38%) Query: 554 GHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTETVGLAK 613 G+ T T ++ G T+T G TLT G +T Q +L+ ST T G Sbjct: 483 GYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQNESDLITGYGSTSTAGANS 542 Query: 614 ALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 +L G G T + +AG S + G T TAG + G Sbjct: 543 SLIAGYGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAG 595 Score = 39.0 bits (90), Expect = 7e-05 Identities = 32/117 (27%), Positives = 43/117 (36%) Query: 550 TVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTETV 609 + G+ T T + ++ G T+T G N LT G +T Q +L ST T Sbjct: 623 VLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTA 682 Query: 610 GLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTG 666 G +L G G T +AG S + G T TAG L G Sbjct: 683 GADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAG 739 Score = 37.0 bits (85), Expect = 3e-04 Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 9/160 (5%) Query: 547 HDETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTST 606 +D ++ G+ T+T T+ G T+T ++ TLT G T +L+ S+ Sbjct: 972 YDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSS 1031 Query: 607 ETVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVG---------KTYTITA 657 T G+ LT G G + +AG S+ G + G ++ I Sbjct: 1032 LTSGIRSFLTAGYGSTLISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQIASHRSSLIAG 1091 Query: 658 GDRIELKTGSSVLIMESNGHITLRGTQLLIEGSGPVQING 697 + ++ S+LI T LI G+ VQ+ G Sbjct: 1092 PESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAG 1131 Score = 32.0 bits (72), Expect = 0.010 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 7/104 (6%) Query: 569 IGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTSTETVGLAKALTVGGGYQVTVAGA 628 I R+ + E+ + GNR+ I G S++T G L G Sbjct: 1081 IASHRSSLIAGPESTQITGNRSMLIAGK-------GSSQTAGYRSTLISGADSVQMAGER 1133 Query: 629 VNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIELKTGSSVLIM 672 AG S + G + G +TAGDR +L G+ ++M Sbjct: 1134 GKLIAGADSTQTAGDRSKLLAGNNSYLTAGDRSKLTAGNDCILM 1177 Score = 32.0 bits (72), Expect = 0.011 Identities = 27/117 (23%), Positives = 42/117 (35%) Query: 547 HDETVHVGHDRTETVDNNETIHIGVDRTETVGNNETLTVGGNRNETIQGMENLLIALTST 606 H ++ G + T+ N + G ++T G TL G + + L+ ST Sbjct: 1084 HRSSLIAGPESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADST 1143 Query: 607 ETVGLAKALTVGGGYQVTVAGAVNTSAGLASAEEVGLSKTTMVGKTYTITAGDRIEL 663 +T G L G +T +AG G G +TAG R +L Sbjct: 1144 QTAGDRSKLLAGNNSYLTAGDRSKLTAGNDCILMAGDRSKLTAGINSILTAGCRSKL 1200
>PERTACTIN#Pertactin signature. Length = 922 Score = 29.7 bits (66), Expect = 0.041 Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 6/135 (4%) Query: 374 GVGALIDRTY-LD-SPGWVGIRQRKVHLQELIGAAIGRLRGLGEPVRIVDIAAGHGRYVL 431 G G L+D Y +D S V + Q V +L GAAI RG V ++A HG + Sbjct: 282 GFGPLLDGWYGVDVSDSTVDLAQSIVEAPQL-GAAIRAGRGARVTVSGGSLSAPHGNVIE 340 Query: 432 DAIATAAERDGAAPDDITLRDYSPPNVEAGRVLIAQRGLEPIARFERGDAFDEASLATLE 491 A+P ITL+ + GR L+ + EP+ G A + + E Sbjct: 341 TGGGARRFPPPASPLSITLQAGARAQ---GRALLYRVLPEPVKLTLAGGAQGQGDIVATE 397 Query: 492 PRPTLAIVSGLYELF 506 P SG ++ Sbjct: 398 LPPIPGASSGPLDVA 412
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 27.2 bits (60), Expect = 0.031 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Query: 15 GALDAGAWAIAAALAAAGAGWWIASGWA--PATIARVLLAVVSTGSGI 60 GA+DA I+ LA+ +G A+ + A ++ ++ AV SGI Sbjct: 362 GAIDASLTTISTVLASVSSGISAAATTSLVGAPVSALVGAVTGIISGI 409
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 32.1 bits (72), Expect = 0.008 Identities = 19/68 (27%), Positives = 28/68 (41%) Query: 11 SVATFGALHAAALSAAPMPAVPAAASASAGTPAAPSPASGAAVPNAASVASAGLPTTTVH 70 + T A A P+ + A A + A + PSP + AA P + LPT Sbjct: 170 QLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAP 229 Query: 71 LPFASLGA 78 + A LG+ Sbjct: 230 VLSAPLGS 237
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 32.3 bits (73), Expect = 0.006 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 8/56 (14%) Query: 491 DALRHCRPRRAGDVVTADAAHLYVFLFACEPVDAEDALARIFDVPVDTLSDRVVCL 546 D L H P AG V+A A HL V A A R F++PV LS R +C+ Sbjct: 58 DWLEHVSPALAGAAVSAGAEHLVVPWLA--------ATERPFELPVPHLSCRRLCV 105
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 29.8 bits (67), Expect = 0.033 Identities = 36/238 (15%), Positives = 59/238 (24%), Gaps = 48/238 (20%) Query: 308 YRAGYQVPVGPLSTRLGVA---YSEMHYRLAGEFSDLEYHGRASVQSVFVAQPLVRARQM 364 R Y + T + + YS Y + + +G V Q + Sbjct: 459 VRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFT-- 516 Query: 365 DLTAQIQYENKNLHDTYGIFDLQTDKNVGLW-SFSLSGSSEDRWFGGGR----------- 412 + Y + L + +G + LSGS + W Sbjct: 517 -DYYNLAYNKRGK------LQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTA 569 Query: 413 -NGVSVTFGAGRLRSND--------------PIGMNTLAKTIGSFSKLNVSALRVQSLGR 457 ++ T ++ P + + + + S L Sbjct: 570 FEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNG 629 Query: 458 RFQFYAQFNAQLASRNLDSSEKFSLGGPYGVRAYGFSAGSGDQGWQASAELRYRAAPG 515 R A L N S Y V+ G G+ G A L YR G Sbjct: 630 RMTNLAGVYGTLLEDNNLS---------YSVQTGYAGGGDGNSGSTGYATLNYRGGYG 678
>PF05860#haemagglutination activity domain. Length = 117 Score = 76.4 bits (188), Expect = 9e-19 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%) Query: 53 LPTGGAIVGGKGDIATSSDGKAMSVNQHTDKLITNWQDFSIAGGERVSFHQPTDKSIALN 112 LP I Q L ++Q+FS+ F+ PT+ ++ Sbjct: 9 LPINSNITTEGNTRIIER------GTQAGSNLFHSFQEFSVPTSGTAFFNNPTNIQNIIS 62 Query: 113 RVIGTNGSQIQGQLDANGK--VFLVNPNGVVFGKGAQVNVGGLVATT 157 RV G + S I G + AN +FL+NPNG++FG+ A++++GG + Sbjct: 63 RVTGGSVSNIDGLIRANATANLFLINPNGIIFGQNARLDIGGSFVGS 109
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 103 bits (257), Expect = 1e-28 Identities = 76/251 (30%), Positives = 118/251 (47%), Gaps = 14/251 (5%) Query: 7 KVAIVTGGSKGIGAAIAKALAAEGASVV-VNYASSKAGADAVVSAIVEAGGRAVAVGGDV 65 K+A +TG ++GIG A+A+ LA++GA + V+Y K + VVS++ A A DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKL--EKVVSSLKAEARHAEAFPADV 66 Query: 66 SKAADAQRIVDAAIENYGRLDVLVNNSGVYEFAPIEAITEEHYRRQFDTNVFGVLLTTQA 125 +A I G +D+LVN +GV I ++++E + F N GV +++ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 126 AVKHL--GEGASIINISSVVTSITPPASAVYSGTKGAVDAITGVLALELGPRKIRVNAIN 183 K++ SI+ + S + + A Y+ +K A T L LEL IR N ++ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 184 PGMIVTEGTHS--------AGIIGSDLETQVRNDTPLGRLGEPGDIASVAVFLASDDARW 235 PG T+ S +I LE + PL +L +P DIA +FL S A Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLE-TFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 236 LTGERLVASGG 246 +T L GG Sbjct: 246 ITMHNLCVDGG 256
>SOPEPROTEIN#Salmonella type III secretion SopE effector protein signature. Length = 239 Score = 31.2 bits (70), Expect = 0.004 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 148 IPPFIATLGTMVAARGFAKWFTNGMPVSMLTDPFAAIGAGANPVIIFLVVAA 199 I PF+ +G AA+ G+P + D F GAGANP I L+ +A Sbjct: 136 IAPFLQEIGE--AAK------NAGLPGTTKNDVFTPSGAGANPFITPLISSA 179
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 66.2 bits (161), Expect = 2e-15 Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 18/196 (9%) Query: 26 LDITDTAAVDAFCAR----VGQFDHVVISAAKTATGPLRALPLADAQAAMDSKFWGAY-- 79 D+ D+AA+D AR +G D +V A G + +L + +A G + Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 80 --RIARSIDIAPGGSLTFVSGYLSVRPSASSVLQGAINAALEALARGLALELAP--VRVN 135 +++ + GS+ V + P S + AA + L LELA +R N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 136 TVSPGLIATPLWDKL--APDARDAMYAGAAQR----LPARRVGQPEDVANAIVYLAT--T 187 VSPG T + L + + + G+ + +P +++ +P D+A+A+++L + Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 188 PYATGSTVLIDGGGAI 203 + T + +DGG + Sbjct: 244 GHITMHNLCVDGGATL 259
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 27.6 bits (61), Expect = 0.027 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 10/55 (18%) Query: 112 EGRALAERLPPVFRSVLDELLGG----------FTPEEVGFLKSMLRRILSNYCE 156 +G A+ E P + S++D L GG T E ++ ++ RIL+N E Sbjct: 112 KGNAVLEVDPSITFSIIDRLFGGTGQAAKVQRDLTDIENSVMEGVIVRILANVRE 166
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 169 bits (429), Expect = 3e-47 Identities = 99/435 (22%), Positives = 170/435 (39%), Gaps = 62/435 (14%) Query: 5 LRNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQIAE--RVMDSNDIEKERGITILAKNCA 62 + NI ++AHVD GKTTL + LL SG E + + D+ +E++RGITI + Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 63 VEYEGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVEGPMPQTRFVTKKALALGLK 122 ++E T +NI+DTPGH DF EV R LS++D +LL+ A +G QTR + +G+ Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 123 PIVIVNKIDRPGARIDWV-------------INQTFDLFDKLGATE----EQLDFPIV-- 163 I +NKID+ G + V I Q +L+ + T EQ D I Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 164 -----------------YASGLNGY---ASLDP-----AAREGDMRPLFEAVLQHVPVRP 198 + SL P A + L E + Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSST 242 Query: 199 ADPDAPLQLQITSLDYSTYVGRIGVGRITRGRIKPGQPVAMRFGPEGDVLNRKINQVLSF 258 + L ++ ++YS R+ R+ G + V R + + KI ++ + Sbjct: 243 HRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSV--RISEKEKI---KITEMYTS 297 Query: 259 TGLERVQVDSAEAGDIVLINGIEDVGIGATICAVDTPEALPMITVDEPTLTMNFLVNSSP 318 E ++D A +G+IV++ E + + + + I P L + Sbjct: 298 INGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQ 356 Query: 319 LAGREGKFVTSRQIRDRLMKELNHNVALRVKDTGDETVFEVSGRGELHLTILVENMRRE- 377 + D L++ V E + +S G++ + + ++ + Sbjct: 357 QREMLLDALLEISDSDPLLR-------YYVDSATHEII--LSFLGKVQMEVTCALLQEKY 407 Query: 378 GYELAVSRPRVVMQE 392 E+ + P V+ E Sbjct: 408 HVEIEIKEPTVIYME 422 Score = 34.4 bits (79), Expect = 0.001 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 1/100 (1%) Query: 387 RVVMQEIDGVRHEPYELLTVDVEDEHQGGVMEELGRRKGEMLDMASDGRGRTRLEYKISA 446 V+++ EPY + E+ + + ++D L +I A Sbjct: 525 EQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVD-TQLKNNEVILSGEIPA 583 Query: 447 RGLIGFQSEFLTLTRGTGLMSHIFDSYAPVKDGSVFERRN 486 R + ++S+ T G + Y V + R Sbjct: 584 RCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPVCQPRR 623
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.005 Identities = 9/92 (9%), Positives = 29/92 (31%), Gaps = 5/92 (5%) Query: 48 EVPAPAAGVLAQVLQNDGDTVVADQIIATID---TEAKAGAAEAAAGAAEVKPAAAPAAA 104 E+ ++ +++ +G++V ++ + EA +++ A + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARL--EQTRYQI 155 Query: 105 APAAQPAAAVASSSAAASPAASKLLAEKGLSA 136 + + P + E+ L Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187
>INTIMIN#Intimin signature. Length = 939 Score = 30.8 bits (69), Expect = 0.015 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 103 TSGIEFLFKKNKITWLKGHGKFTGKTDAGVQIEVSGE--GETEVVTAKNVIIATGSKARH 160 SG L + T G T K+D Q+ VS + T + A VI +KA Sbjct: 601 VSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI 660 Query: 161 LPNVPVDNKIVSDNEGALTFE 181 V++ + A+T+ Sbjct: 661 TEIKADKTTAVANGQDAITYT 681
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.8 bits (64), Expect = 0.048 Identities = 57/301 (18%), Positives = 107/301 (35%), Gaps = 57/301 (18%) Query: 140 LGNVVGATS-NTVSGLSSTVKALGTGQLSPLAPVTTPVGTVLDTVANGLTAAGTTIGSTL 198 GN++G + N L L T Q + L + +D + + G S L Sbjct: 124 AGNILGGGAENIGDNLGKAGGILSTFQ-NFLGTALS--SMKIDELIKKQKSGGNVSSSEL 180 Query: 199 SSGAVQQVTQPLSSAITPLVITAGQVTQQVGTTTGLGQPVSGLLGQVGGAISSAGKQVGS 258 + +++ + Q L + L +QQ+ T + L + G ++ + Sbjct: 181 AKASIELINQ-LVDTVASLNNNVNSFSQQLNTLGSVLSNTKHL--------NGVGNKLQN 231 Query: 259 TSNQPLVGDVGQLVTAVGNTVTNAGGLVNPNGPNGAAPIPG--LITSLVGGSTTAVQN-- 314 N +G V+ + + ++ + L N + G L T ++G + Sbjct: 232 LPNLDNIGAGLDTVSGILSAISASFILSNADADTRTKAAAGVELTTKVLGNVGKGISQYI 291 Query: 315 ---GSSSGSSATNPLGGLLSG---LGSTPLG----------------------------- 339 ++ G S + GL++ L +PL Sbjct: 292 IAQRAAQGLSTSAAAAGLIASAVTLAISPLSFLSIADKFKRANKIEEYSQRFKKLGYDGD 351 Query: 340 SLTGAVGGATGGAGGANPLAPVTGLLNTVTAAVGGAAGSGASSNPLAPVTSLVGGVSGTA 399 SL A TG + L ++ +L +V++ + AA +S APV++LVG V+G Sbjct: 352 SLLAAFHKETGAIDAS--LTTISTVLASVSSGISAAA---TTSLVGAPVSALVGAVTGII 406 Query: 400 S 400 S Sbjct: 407 S 407
>cloacin#Cloacin signature. Length = 551 Score = 35.1 bits (80), Expect = 8e-04 Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 30 GGSGSISKGISGGSGSGGSDSISTSGGGTSGGTSGSTSGGTSGSTSGSTSGSTSGSTSGS 89 G+ S S I+GG G ++ G G S + + GG SGS GS G+ G Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWS--SENNPWGGGSGSGIHWGGGSGHGNGGG- 67 Query: 90 TSGTTSGTSSGTSGTSGVSANPVG---NVLAQGGNVITSLGGTASGLGSTIAN 139 SG SGT G A PV L+ G ++ +A L + IA+ Sbjct: 68 --NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 31.2 bits (70), Expect = 0.010 Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Query: 39 ISGGSGSG-----GSDSISTSGGGTSGGTSGSTSGGTSGSTS------GSTSGSTSGSTS 87 +SGG G G S S + +GG T G G S G+ S+ GS SG G S Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 88 GSTSGTTSGTSSGTSGTSG 106 G +G +G S G SGT G Sbjct: 61 GHGNGGGNGNSGGGSGTGG 79
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 42.9 bits (101), Expect = 2e-07 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 11/142 (7%) Query: 4 LLSTSIFFAWAALVAAGDIRFRLVRNSLVICGGTAALVSSLIHANPFGISTGQALIGMLV 63 L+ + + D+ L+ + L + L+ +L+ F +S G A+IG + Sbjct: 134 TLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLL--GGF-VSLGDAVIGAMA 190 Query: 64 GLVSFFP-------LFAMRVMGAADVKVFAVLGAWCGLPILLWLWVIASLAAGVHVLGLM 116 G + + L MG D K+ A LGAW G L + +++SL +GL+ Sbjct: 191 GYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLI 250 Query: 117 LLTRTPLGALWVRGLPAMALAG 138 LL G P +A+AG Sbjct: 251 LLRNHHQSKPIPFG-PYLAIAG 271
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 133 bits (337), Expect = 5e-36 Identities = 60/252 (23%), Positives = 113/252 (44%), Gaps = 11/252 (4%) Query: 160 RSVVQVDVRVVEFSRSVLKEAGLNFFKQSNGFAFGAFSPGGLQSVTGGA----TSAFAAT 215 R V V+ + E + G+ + ++ G S + + GA ++ Sbjct: 344 RPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSS 403 Query: 216 GGIPIASAFNLVVNSAGRGIFG-NISILEANNLARVLAQPTLVALSGQSASFLAGGEIPV 274 S+FN + +G + ++ L ++ +LA P++V L A+F G E+PV Sbjct: 404 SLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPV 463 Query: 275 PVPQALGSTA-----IDWKQYGVGLTLTPTVLSQHRIALKVAPESSQLDFQHGVTINSVS 329 S ++ K G+ L + P + + L++ E S + T +S Sbjct: 464 LTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASST-SSDL 522 Query: 330 VPAITTRRADTTVELGDGESFVIGGLIDRETMSNISKVPVLGDLPIIGAFFKSLNYQQND 389 TR + V +G GE+ V+GGL+D+ KVP+LGD+P+IGA F+S + + + Sbjct: 523 GATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSK 582 Query: 390 KELVIIVTPHLV 401 + L++ + P ++ Sbjct: 583 RNLMLFIRPTVI 594
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 40.2 bits (94), Expect = 1e-05 Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 3/119 (2%) Query: 24 DEHLRW-LRDTLVSAGMVEAVSLEPGALAQRILGLN-PAIVFIDFSRAQAEASAAAAAVR 81 D +R L L AG + A R + +V D A ++ Sbjct: 12 DAAIRTVLNQALSRAGY-DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIK 70 Query: 82 LAHPSLPVVALGTLAQPESALAALRAGVRDFIDVSGSAEDALRITRGLLEHAGAEPANR 140 A P LPV+ + +A+ A G D++ + + I L P+ Sbjct: 71 KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKL 129
>cloacin#Cloacin signature. Length = 551 Score = 29.7 bits (66), Expect = 0.031 Identities = 12/25 (48%), Positives = 12/25 (48%) Query: 430 GGFGGSGGGGGFGGGFGRGGGGFNV 454 G G GG G GGG G GG V Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAV 84
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.7 bits (69), Expect = 0.013 Identities = 21/96 (21%), Positives = 27/96 (28%), Gaps = 5/96 (5%) Query: 488 EAAAAAQSLDEQAARLRDTAAVFRIDDDAAQPAAAPAARQAPRAVPAPAAVPVSSAAPAA 547 A Q + P AP + P+ P P PV Sbjct: 56 APADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPV----KKV 111 Query: 548 ARDDRDATPKRAAP-VRKPAGAPAAPAPAAATAGGD 582 + RD P + P APA P + ATA Sbjct: 112 EQPKRDVKPVESRPASPFENTAPARPTSSTATAATS 147
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 679 bits (1753), Expect = 0.0 Identities = 241/865 (27%), Positives = 364/865 (42%), Gaps = 65/865 (7%) Query: 2 RIRHSFLCVSVLVVGSPSHATEFNSSFLDIDGTSNVDLSQFSQPDFTLPGEYMLDVQVND 61 +R C S FN FL D + DLS+F PG Y +D+ +N+ Sbjct: 27 FVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNN 86 Query: 62 LFYGLQAIQFIALDASGAGKPCLPPELVARFGLKPSLAKDLPRLQGGRCVDLG-AIEGAT 120 + + + F D+ PCL +A GL + + L CV L I AT Sbjct: 87 GYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDAT 146 Query: 121 VRYLKSDGRLKITVPQAALEFTDSTYLPPSSWSDGIAGAMLDYRVIANTNRNFGSGGGQT 180 + RL +T+PQA + Y+PP W GI +L+Y N+ +N GG + Sbjct: 147 AQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQN--RIGGNS 204 Query: 181 NSIQAYGTIGANWDAWRFRGDYQAQSNVGNTAYADRT-FRFSRLYAFRALPSIQSTVTFG 239 + G N AWR R + N +++ + ++ + R + ++S +T G Sbjct: 205 HYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLG 264 Query: 240 DDYLSSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQVGRVLYVTR 299 D Y DIFD GA + SDD MLP S RG+AP+I G+AR A VT+ Q G +Y + Sbjct: 265 DGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNST 324 Query: 300 VSPGAFALQNIN-TSVQGTLDVTVDEEDGSVQRFQVTTAAVPFLARTGQLRYKAAVGKPR 358 V PG F + +I G L VT+ E DGS Q F V ++VP L R G RY G+ R Sbjct: 325 VPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYR 384 Query: 359 QFGGAGVTPFFGFGEVAYGLPFDVTLYGGFIAASGYTSIALGVGRDFGTFGAVSADVTHA 418 P F + +GLP T+YGG A Y + G+G++ G GA+S D+T A Sbjct: 385 SGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQA 444 Query: 419 RAHLWWNGATRNGNSYRINYSKHFDGLDADVRFFGYRFSEREYTNFAQFSGDPTAYGL-- 476 + L + + +G S R Y+K + +++ GYR+S Y NFA + Sbjct: 445 NSTL-PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIE 503 Query: 477 -------------------ANSKQRYSATMSKRFGDTST-YFSYDQTTYW-ARASEQRVG 515 N + + T++++ G TST Y S TYW +++ Sbjct: 504 TQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQ 563 Query: 516 LTLTRAFSIGALRNLNVSVSAFRTQSAGASGNQFSVTATLPIGGRHTVTSNLTTGSGSTS 575 L AF ++N ++S T++A G + + I H + S+ + S Sbjct: 564 AGLNTAF-----EDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHAS 618 Query: 576 ANAGYIYDDPAGRT----------------YQINAGATDGRASANASFRQRTSTYQ---- 615 A+ +D T Y + G G + S T Y+ Sbjct: 619 ASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYG 678 Query: 616 -LSAQASTLANAYAAASLEVDGSLVATQYGVSAHANGNAGDTRLLVSTDGVPDVPLS-GT 673 + S ++ V G ++A GV+ DT +LV G D + T Sbjct: 679 NANIGYSH-SDDIKQLYYGVSGGVLAHANGVTLGQPL--NDTVVLVKAPGAKDAKVENQT 735 Query: 674 LTHTDSRGYAVLDGISPYNVFDATVNVEKLPLEVQVSNPIQRMVLTDGAIGFVKFSAARG 733 TD RGYAVL + Y ++ L V + N + +V T GAI +F A G Sbjct: 736 GVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVG 795 Query: 734 SNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEAGAAFLTQVQPKSALVVRAGERT-- 791 L +TLT KPLPFGA V + + GIV + G +L+ + + V+ GE Sbjct: 796 IKLLMTLTH-NNKPLPFGAMVTS-ESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENA 853 Query: 792 LCAVN-ALPNQLQLEG-TPIPVTCQ 814 C N LP + Q + T + C+ Sbjct: 854 HCVANYQLPPESQQQLLTQLSAECR 878
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.023 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 9/83 (10%) Query: 35 VTALCGPNGCGKSTLLRTLAGLQPARAGHVDV-NGKPLASFRRRALARELTMLAQFN--- 90 L G G GKSTL+ TL GL H D+ GK +A EL+ + F Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAFRRAD 657 Query: 91 --QIPSGLTVRE---LVAYGRYA 108 + + + R+ AYGRY Sbjct: 658 AEAVKAFFSSRKDRYRGAYGRYV 680
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 78.2 bits (192), Expect = 3e-19 Identities = 58/198 (29%), Positives = 88/198 (44%), Gaps = 16/198 (8%) Query: 58 DAMVRHYGGDPAQHARALMSQWSKYYFGRAAPAGVVAALTLGRPLDMAPERTFVAL-DDG 116 D + R+ ++ + L+S W+++Y G P ++A LT + LD++PE + G Sbjct: 75 DHIYRNQPMMIREN-KPLISLWAQWYIGLMVPPLMLALLTQEKALDVSPEHFHAEFHETG 133 Query: 117 MPAALYF--APDALGAPCSEPASRYAGLVAHLGAVIDLLAAMGRVTPRVLWSNAGNLLDY 174 A + D P S + L V+ L A G + +++WSN G L+++ Sbjct: 134 RVACFWVDVCEDKNATPHSPQHRMETLISQALVPVVQALEATGEINGKLIWSNTGYLINW 193 Query: 175 LLDTYRSLPCAA--DPVRDADWLFGASCVRGEPNPLRLPVRDAVPRSALLPTPFRARRVC 232 L + L A + +R A F + GE NPL R V R LL RR C Sbjct: 194 YLTEMKQLLGEATVESLRHA-LFFEKTLTNGEDNPL---WRTVVLRDGLL-----VRRTC 244 Query: 233 CLRYEIPGETQLCGSCPL 250 C RY +P Q CG C L Sbjct: 245 CQRYRLPD-VQQCGDCTL 261
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 113 bits (284), Expect = 2e-31 Identities = 68/272 (25%), Positives = 115/272 (42%), Gaps = 15/272 (5%) Query: 67 PQRVVALDFMFAESVIALDLVPVGMADTAFYPGWLGYGSDRLAHVTDIGSRQEPGLEAIA 126 P R+VAL+++ E ++AL +VP G+ADT Y W+ V D+G R EP LE + Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPP-LPDSVIDVGLRTEPNLELLT 93 Query: 127 AVKPDLIIGVGFRHAPIFAALDRIAPTILFQFSPNVSEDGVPVTQLDWMREIFRTIGAVT 186 +KP ++ + P L RIAP F FS L R+ + + Sbjct: 94 EMKPSFMVW-SAGYGPSPEMLARIAPGRGFNFSDGKQ-------PLAMARKSLTEMADLL 145 Query: 187 GRDARAKAVEAQLDAGIARNAARLKAAGRSGERIALLQDLGLPDRYWAYTGNSTSAGLAR 246 + A+ AQ + I R + G R LL L P + NS + Sbjct: 146 NLQSAAETHLAQYEDFIRSMKPRFV---KRGARPLLLTTLIDPRHMLVFGPNSLFQEILD 202 Query: 247 ALGLE-PWPKKPTREGTLYVTSADLLRQRDLAVLFVTATGTDVPLSSKLDSPVWRFVPAL 305 G+ W + G+ V+ L +D+ VL + + + + +P+W+ +P + Sbjct: 203 EYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKD-MDALMATPLWQAMPFV 261 Query: 306 RDHRIALIERNIWGFGGPMSALKLADVMTDTM 337 R R + +W +G +SA+ V+ + + Sbjct: 262 RAGRFQRVP-AVWFYGATLSAMHFVRVLDNAI 292
>PF06776#Invasion associated locus B Length = 214 Score = 30.3 bits (68), Expect = 0.020 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 10/62 (16%) Query: 8 RLRAIA-AAASVTFGMAAGHAFAQTAPAVNAGAATSTDSARNGAAASAGASAPNGPATGT 66 L+AI A ++ +A+ A+ A A GA A A + + A Sbjct: 23 ALKAIQMGPAELSPMLASCRRLARRNGARLMLA---------GAMAIALSFGWSDRADAQ 73 Query: 67 LP 68 Sbjct: 74 GA 75
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 32.0 bits (72), Expect = 0.005 Identities = 15/35 (42%), Positives = 20/35 (57%) Query: 237 AIHAGDAPNVIPDRAQMRLSVRALKPEVRDLLEAR 271 AI+ P+V PD A ++ L PE RDLL+ R Sbjct: 227 AINQEPVPHVQPDIATTTTDIQGLPPEARDLLDER 261
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 43.3 bits (102), Expect = 1e-06 Identities = 56/314 (17%), Positives = 95/314 (30%), Gaps = 35/314 (11%) Query: 7 PRARAVFPFAALVAQQP-----LQQALLLAAIDPSLGGVLVSGPRGTAKSTAARALAELL 61 LV + + L D + ++++G GT K ARAL + Sbjct: 128 KLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLT---LMITGESGTGKELVARALHDYG 184 Query: 62 P--EGEFVTLPLSASDEQVTGTLDLAHALAA--NGVRFRPGLLARAHRGVLYVDEVNLLA 117 G FV + ++A + + H A G +A G L++DE+ + Sbjct: 185 KRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMP 244 Query: 118 DGLVDTLLDVAASGVNVVERDGVSHAH--DARFVLVGTMNPE----EGELRPQLLDRFGL 171 LL V G G D R V + + +G R L R + Sbjct: 245 MDAQTRLLRVLQQG--EYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNV 302 Query: 172 M-VELENCFDAAQRERIVK-ARLAFDLDPDAFRARHASAQRELRDGIHAARARLSALDFD 229 + + L R+R L F + +++ A + A + Sbjct: 303 VPLRL-----PPLRDRAEDIPDLV-----RHFVQQAEKEGLDVKRFDQEALELMKAHPWP 352 Query: 230 DAVHA---RVSALCIDAAVDGLRADLVMLRAARALAALEQADAVTVSHVERVADAVLRHR 286 V V L D + +++ + A S ++ AV + Sbjct: 353 GNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENM 412 Query: 287 RHAGAPPSSGAPPS 300 R A PPS Sbjct: 413 RQYFASFGDALPPS 426
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.8 bits (72), Expect = 0.005 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 2/124 (1%) Query: 69 GIGDGAASLLTTIPILLMGVGALSARRLQRVTGIAGGVWLGVALIGFAC-ASRIGAQHAW 127 + + + T +L +G +L GI + G+ + F +G Sbjct: 45 NKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFS 104 Query: 128 VLLASACCAGIGIAMVQALLPGFVKTHFA-TRIGGAMGVYSTSIMGGAVLASVVAPFAAA 186 +L+ + G G A AL+ V + G A G+ + + G + + A Sbjct: 105 LLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAH 164 Query: 187 RWGW 190 W Sbjct: 165 YIHW 168
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 28.9 bits (64), Expect = 0.016 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Query: 88 FESGAILIYLADKTGQLMPKDAAGRYETIQWVMFQMGGIGP----MFGQVGFFHKFAGRD 143 +E G D G + D G+ IQ QMG + + G +G+ +F+G Sbjct: 45 YEPGGKYHLFGDPRGSV--SDRTGKINVIQDYTHQMGNLLIQQANINGTIGYHTRFSGHG 102 Query: 144 YEDKRPRDRYAAES 157 +E+ P D +AA+S Sbjct: 103 HEEHAPFDNHAADS 116
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 66.2 bits (161), Expect = 3e-14 Identities = 103/408 (25%), Positives = 149/408 (36%), Gaps = 94/408 (23%) Query: 1 MKTKLAALAALAGCSALAQAQSSVTLYGVVDTGLLYQSTSAASFRPNAPNTGKVFRMKDG 60 MK L AL A A A + VTLYG + G+ ++R GKV +++ G Sbjct: 1 MKKSLIALTLAALPVA---AMADVTLYGAIKAGV-------QTYRSVEHTDGKVSKVETG 50 Query: 61 ---GIYSSFWGIKGSEDLGGGYKVNFKL-QGSFDSGTGRLQLSDTPGAVAIFNQIASLGV 116 + S G KG EDLG G K ++L QG+ +GT N+ + +G+ Sbjct: 51 SEIADFGSKIGFKGQEDLGNGLKAVWQLEQGASVAGTNT----------GWGNKQSFVGL 100 Query: 117 SGPFGTVTAGRQIVPMIYAMADTDVRNAQFFGSVLTAWLGLNTAAGWPATSTNGAIGALY 176 G FGT+ AG + + +T G+ + AW S Y Sbjct: 101 KGGFGTIRAGS----LNSPLKNT--------GANVNAWESGKFTGNVLEISGMAQREHRY 148 Query: 177 DSNALVYQSPTFAGVSLALEYAP-------------------GGVAGQFQGGTRESVVLR 217 S + Y SP FAG S +++YAP G Q+ G Sbjct: 149 LS--VRYDSPEFAGFSGSVQYAPKDNSGSNGESYHVGLNYQNSGFFAQYAG--------L 198 Query: 218 YSNYGLNASAVYYNGHDTNPAPGVAPT--------GVDNNRFVYVGAKYTIRDFSVSASY 269 + YG + Y+ + G DNN +YV +D + Y Sbjct: 199 FQRYGEGTKKIEYDDQTYSIPSLFVEKLQVHRLVGGYDNNA-LYVSVAAQQQDAKL---Y 254 Query: 270 GNGRNPAHADRVNLDMLSAGVGYRF---TPALQVASAVYYLKDRNRSANRSTAVVLTADY 326 G +H + ++A YRF TP + A D N VV+ A+Y Sbjct: 255 GAMSGNSHNSQTE---VAATAAYRFGNVTPRVSYAHGFKGTVDSANHDNTYDQVVVGAEY 311 Query: 327 SLSKRTMVYAQAGHVNNRGTMDQMLVYGQPVAPGVGTTAAMVGLRHNF 374 SKRT AG + G +V +TA+ V LRH F Sbjct: 312 DFSKRTSALVSAGWL-QGGKGADKIV----------STASAVVLRHKF 348
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 54.5 bits (131), Expect = 4e-10 Identities = 55/297 (18%), Positives = 110/297 (37%), Gaps = 15/297 (5%) Query: 57 WNTTLFMAASIIGAPLSATVLSRFGPRTAYLVALIVFCAGTLACA-SAKDMPWMLAGRAA 115 W T FM IG + + + G + L +I+ C G++ ++ R Sbjct: 53 WVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFI 112 Query: 116 QGLGGGILFALSYALIRVVFDERLWSRAMAMVSGMWGVATLCGPAIGGIFAQSGTWRLAF 175 QG G AL ++ + +A ++ + + GPAIGG+ A W ++ Sbjct: 113 QGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW--SY 170 Query: 176 IALLPVAAVLALIVIVQLPAHEVSGVPAARPAIGKILLLAASVLVVSVASLSREIIGNVV 235 + L+P+ ++ + +++L EV I I+L++ ++ + + S I +V Sbjct: 171 LLLIPMITIITVPFLMKLLKKEVR--IKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIV 228 Query: 236 GVGAGLAIALLIARLERGATTRLLPTGAYDIRAPLGAIYACMSLLVVGMTTEIFVPYFLQ 295 V L+ + + + + T + G + + + VPY ++ Sbjct: 229 SV---LSFLIFVKHIRK-VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMK 284 Query: 296 TIHGYPPLAAGYLTALMAAGWTVGSLVSSGRSPAAVQALVRSGPLVVVIALVTLAIV 352 +H G + G++ + R GPL V+ VT V Sbjct: 285 DVHQLSTAEIGSVIIF------PGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSV 335
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 332 bits (854), Expect = e-112 Identities = 120/376 (31%), Positives = 183/376 (48%), Gaps = 49/376 (13%) Query: 121 DARGDVIAYVERLTTVRSASAQPSAEGLVGGADAFNAALGALQRVAPSMLPVLLLGESGT 180 G +A +R + +Q LVG + A L R+ + L +++ GESGT Sbjct: 113 GIIGRALAEPKRRPSKLEDDSQDGM-PLVGRSAAMQEIYRVLARLMQTDLTLMITGESGT 171 Query: 181 GKELFARALHEASARAMGPFVVVDCSGIAETLFESELFGYEKGAFTGANQRKPGLVETAQ 240 GKEL ARALH+ R GPFV ++ + I L ESELFG+EKGAFTGA R G E A+ Sbjct: 172 GKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAE 231 Query: 241 GGTLFLDEIGDVPLPMQVKLLRLIESGTFRRVGGVEALRADFRLVAATHKPLREMIDDGR 300 GGTLFLDEIGD+P+ Q +LLR+++ G + VGG +R+D R+VAAT+K L++ I+ G Sbjct: 232 GGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGL 291 Query: 301 FRQDLYYRINAFPIPLPALRERQGDVALLAESILRRIANARGNAGDASARPFAARPFVLT 360 FR+DLYYR+N P+ LP LR+R D+ L +++ Sbjct: 292 FREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGL------------DVKRFD 339 Query: 361 ERARACLDAYAWPGNIRELRNVLERACLFADDGTIRVEHLP----AELVAAAAAPQERDA 416 + A + A+ WPGN+REL N++ R I E + +E+ + + Sbjct: 340 QEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARS 399 Query: 417 DARGLSDAE--------------------------------LVRIARTFDGTRKALAEHV 444 + +S A ++ G + A+ + Sbjct: 400 GSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLL 459 Query: 445 GMSERTLYRRMKALGL 460 G++ TL ++++ LG+ Sbjct: 460 GLNRNTLRKKIRELGV 475
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 494 bits (1274), Expect = e-164 Identities = 178/875 (20%), Positives = 300/875 (34%), Gaps = 96/875 (10%) Query: 16 LSAVASCMPCAAA-TNPGNTAPDTVEFDTGALREHGIDATASRYFAHAPRFMPGTASVRL 74 L+ + A A + + F+ L + F + PGT V + Sbjct: 23 LAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDI 82 Query: 75 TVNGKRAGRADARFDDNGN-----LCATPGLLRAAGLVVPDALRDATAATARSAGADTPP 129 +N D F+ + C T L + GL TA+ + Sbjct: 83 YLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGL--------NTASVSGMNLLADDA 134 Query: 130 CYDYRRAYPQTIVTLRPADGAVDLVVPPDAL---DTGRRTPDMFEHGGFAGLVNYDLLAM 186 C L ++L +P + G P++++ G AGL+NY+ Sbjct: 135 CVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGN 194 Query: 187 TTRNP-AGTSQYWQATTEAGFNAADWIVRSSQIAT------VVDGHAGIDHQAAYAQRTF 239 + +N G S Y ++G N W +R + + H + +R Sbjct: 195 SVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDI 254 Query: 240 ASRGATLQAGQIVPRSTLFAIGRTFGVQMFPDEALAVT--PGAAARVTGIARTQARVEVR 297 + L G + +F G Q+ D+ + G A + GIAR A+V ++ Sbjct: 255 IPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIK 314 Query: 298 QLGVLIHASQLPPGPFTLTDLPLVSGSADLDVTVVEATGDVQHFIVPGSSLPGAGLAAAQ 357 Q G I+ S +PPGPFT+ D+ S DL VT+ EA G Q F VP SS+P Sbjct: 315 QNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHT 374 Query: 358 GLAIAVGRLQNDGYAQ-APWLATATRGWQIRQRARLNAGILVSSPLQSGAASVEFAPLAG 416 +I G ++ Q P +T + + G ++ ++ + G Sbjct: 375 RYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKN--MG 432 Query: 417 VAAAVGVDLTRAAGR-------NGAQTRIALSSNGDTPLRANVSFVRR---TSGYRELTD 466 A+ VD+T+A +G R + + + N+ V TSGY D Sbjct: 433 ALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLN-ESGTNIQLVGYRYSTSGYFNFAD 491 Query: 467 AVRS------------------------TDAFTPPARTQFAAALGWHDRTLGMLSFDYTR 502 S A+ + Q L + Sbjct: 492 TTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT--STLYLSGSH 549 Query: 503 VAVFDGPAMQRIAGA-WTRPLGRGSLALNVSRT--FGTRGAIGTQVYLSATVPIGT---- 555 + + A + L+ S T +G + L+ +P Sbjct: 550 QTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGR-DQMLALNVNIPFSHWLRS 608 Query: 556 ------RSVSAFANVTGDS-----VRSGARYSDTFGRTGSYSVAADYDTAIRSPSIRATV 604 R SA +++ D +G + SYSV Y S +T Sbjct: 609 DSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNS-GSTG 667 Query: 605 SATPKHVRAIVNAGL---YGADRATLGVNLRGAVALLDGVGMLSPYEIRDTLALARVGDR 661 AT + NA + + D L + G V L + DT+ L + Sbjct: 668 YATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQP-LNDTVVLVKAPGA 726 Query: 662 AGIELVTPSGPVWTDRHGRAVIASLPAYTQTLVRINTKSLPRNLDLKNGIQTVEAGRGSV 721 ++ +G V TD G AV+ Y + V ++T +L N+DL N + V RG++ Sbjct: 727 KDAKVENQTG-VRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAI 785 Query: 722 SRVEFAVEQTRRVLLTVTLSNGAPLPVLSTVVDDDDRFVTVSGSEGRLLLTGAQLTTPLR 781 R EF ++L+T+T N PLP + V + + + G++ L+G L ++ Sbjct: 786 VRAEFKARVGIKLLMTLT-HNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQ 844 Query: 782 VAL--PDGAYCRLAIALPATPPATTRYYERADARC 814 V + A+C LP + + + A C Sbjct: 845 VKWGEEENAHCVANYQLPPE--SQQQLLTQLSAEC 877
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 70.2 bits (172), Expect = 2e-15 Identities = 80/345 (23%), Positives = 130/345 (37%), Gaps = 40/345 (11%) Query: 53 HVGAIIGIVGLVWMIAAPRWGRVADTRGRLPAMRAAIGGFVASSLLLTGYVGWALRDGGS 112 H G ++ + L+ AP G ++D GR P + ++ G ++ + Sbjct: 44 HYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIM------------A 91 Query: 113 AVPPVWVGFAALLVTRAAMGGCYAGLPVAAMAWIADRTPATGRAAVIARFGAAGAIGMVL 172 P +WV + +V G A A+IAD T RA A GMV Sbjct: 92 TAPFLWVLYIGRIV-----AGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVA 146 Query: 173 APPLAGWLAGFDMTLALAVFALLP-LAGLAGLRRLRDDGAHAVRRASPRLKPTDPRVRLP 231 P L G + GF A L L L G L + +H R R + +P Sbjct: 147 GPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE--SHKGERRPLRREALNPLASFR 204 Query: 232 WCSAFALYSAVM-----------IANSVLGFYVIDRLHVRTGDASMVAGYVLGSAGIGLI 280 W + +A+M + ++ + DR H G L + GI Sbjct: 205 WARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTI----GISLAAFGILHS 260 Query: 281 AAQSVV-GRL-RAVAPLQWLRWGALAGGIGFVSTLAAPAGHPMLLCASYFVAACGMGAAF 338 AQ+++ G + + + L G +A G G++ L A A + + A G G Sbjct: 261 LAQAMITGPVAARLGERRALMLGMIADGTGYI--LLAFATRGWMAFPIMVLLASG-GIGM 317 Query: 339 PAVAALASTRVEAHEQAACAGTMSMAQGLSMVVAPLAGTMLYELH 383 PA+ A+ S +V+ Q G+++ L+ +V PL T +Y Sbjct: 318 PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362 Score = 34.4 bits (79), Expect = 7e-04 Identities = 17/55 (30%), Positives = 23/55 (41%) Query: 335 GAAFPAVAALASTRVEAHEQAACAGTMSMAQGLSMVVAPLAGTMLYELHPAAPFV 389 GA A + + E+A G MS G MV P+ G ++ P APF Sbjct: 110 GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFF 164
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 265 bits (679), Expect = 1e-91 Identities = 137/252 (54%), Positives = 175/252 (69%) Query: 13 VAVVTGAARGIGAAVVRALAACGVDVAAFDIDADALSRAHEDRPPAPGRVHPFAVDVADA 72 +A +TGAA+GIG AV R LA+ G +AA D + + L + F DV D+ Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 73 RAVRAAIEHVEGTVGPIGMLANVAGVLRLAAATSLTDDDWAHCFAVNAHGVFHLSRAVAQ 132 A+ +E +GPI +L NVAGVLR SL+D++W F+VN+ GVF+ SR+V++ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 133 HMIERRAGSIVTVGSNAALVPRTQMAAYAASKAAAHQFTRCLGLELAGHGIRCNIVAPGS 192 +M++RR+GSIVTVGSN A VPRT MAAYA+SKAAA FT+CLGLELA + IRCNIV+PGS Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 193 TDTPMQRQLWRGPEGPAGVIAGSLETYRTGIPLGRIAAPDDIAGTVLFLLSDAARHVTLH 252 T+T MQ LW G VI GSLET++TGIPL ++A P DIA VLFL+S A H+T+H Sbjct: 190 TETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMH 249 Query: 253 TLCVDGGATLGV 264 LCVDGGATLGV Sbjct: 250 NLCVDGGATLGV 261
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 357 bits (917), Expect = e-126 Identities = 151/303 (49%), Positives = 201/303 (66%), Gaps = 15/303 (4%) Query: 1 MAIPKIASYPMP--AELPANRVNWRFDPHRAALLVHDMQDYFLDFYDRAAAPVPTLVAHV 58 MAIP I Y MP +++P N+V+W DP+RA LL+HDMQ+YF+D + A+PV L A++ Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60 Query: 59 RRLIDFARAAGMPVYYTAQPATQAAADRALLTDMWGPGLTAQPSRAAICDALAPASGDTV 118 R+L + G+PV YTAQP +Q DRALLTD WGPGL + P I LAP D V Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLV 120 Query: 119 LDKWRYSAFRRSPLETCLREQARDQLAICGIYAHIGCLMTACDAFMRDVQPFFVADALAD 178 L KWRYSAF+R+ L +R++ RDQL I GIYAHIGCL+TAC+AFM D++ FFV DA+AD Sbjct: 121 LTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVAD 180 Query: 179 FSEREHRMALDYVAGRCGMAVTTDALVGV---APADDSAP----------MLVAIAAQVA 225 FS +H+MAL+Y AGRC V TD+L+ APAD I Q+A Sbjct: 181 FSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQIA 240 Query: 226 RSLRIPAADLREHDNLIDCGLDSIRMMTLVEQWRAQGYDVTFVQLAEQPTLGAWTQVLQR 285 L+ D+ + ++L+D GLDS+R+MTLVEQWR +G +VTFV+LAE+PT+ W ++L Sbjct: 241 ELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLTT 300 Query: 286 AAQ 288 +Q Sbjct: 301 RSQ 303
>SSPANPROTEIN#Salmonella invasion protein InvJ signature. Length = 336 Score = 28.6 bits (63), Expect = 0.026 Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 8/163 (4%) Query: 37 LLGPNGVGKSTLLRALARLASPTGRATFGSFDLLDGSRREHTRQVGYLPQTLPQPSSLLV 96 L +G S L+A+ ++ T AT S D + ++ G + + + + L Sbjct: 131 LESVSGKKLSADLKAVESVSEVTDNATGISDDNIKALPGDNKAIAG---EGVRKEGAPLA 187 Query: 97 YEAVRSALRATCGGLSDATRDRRLQQVFTRLRLHPLAMSPLDRLSGGQRQMVGLAQVLVR 156 + + + A G + ++++ V ++L L P ++ L +L+GG +M AQ Sbjct: 188 RDVAPARMAAANTGKPEDKDHKKVKDV-SQLPLQPTTIADLSQLTGGDEKMPLAAQSKPM 246 Query: 157 DTPLLLLD---EPTSALDLRWQLLALE-AVGEAARQRGAIVLV 195 T D S+L R+Q + +V ARQ G L+ Sbjct: 247 MTIFPTADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGEFSLI 289
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 314 bits (807), Expect = e-102 Identities = 126/326 (38%), Positives = 177/326 (54%), Gaps = 40/326 (12%) Query: 351 ELALRVASKRLPILVLGETGAGKEVFARAIHDAGARRARPFVAVNCGALPETLIESELFG 410 + R+ L +++ GE+G GKE+ ARA+HD G RR PFVA+N A+P LIESELFG Sbjct: 151 RVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFG 210 Query: 411 YAAGAFTGARKHGARGKIALADGGTLFLDEIGDMPLTLQTRLLRVLADGEVVPLGSDTPV 470 + GAFTGA+ G+ A+GGTLFLDEIGDMP+ QTRLLRVL GE +G TP+ Sbjct: 211 HEKGAFTGAQTRST-GRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPI 269 Query: 471 RVDLDVICATHRDLARMVADGTFREDLYYRLSGATFELPPLRERADVGDVIATVFAEEAQ 530 R D+ ++ AT++DL + + G FREDLYYRL+ LPPLR+RA+ + F ++A+ Sbjct: 270 RSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE 329 Query: 531 ATG-HVLTLDPTLAAQLAAYPWPGNVRQLRNVLRYACAVCDAACVTRRDLPADLAAQLGA 589 G V D + A+PWPGNVR+L N++R A+ +TR + +L +++ Sbjct: 330 KEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPD 389 Query: 590 GPAG--------------------------------------ALPDDERGRIVAALTAHR 611 P L + E I+AALTA R Sbjct: 390 SPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATR 449 Query: 612 WRPDAAAKALGISRATLYRRIAKHRI 637 AA LG++R TL ++I + + Sbjct: 450 GNQIKAADLLGLNRNTLRKKIRELGV 475
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 29.4 bits (66), Expect = 0.010 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 7/39 (17%) Query: 140 EELSAAHLRL-ANTFIERLDWA-ACI-----DRYDRPHT 171 E S L TF +RL+WA C D+YD +T Sbjct: 14 ETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNNNT 52
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.4 bits (68), Expect = 0.006 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 196 EAERAEKAAREAEEAARQEEEAARADGEDEMATDAATTTPADSASVSDTAPDVEIDTK 253 EAE AEKA +EAE ++ +E R E E A A++S+ A VEI K Sbjct: 142 EAEAAEKAFQEAE---QRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQK 196
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 32.7 bits (74), Expect = 0.002 Identities = 12/37 (32%), Positives = 14/37 (37%) Query: 205 VRALVDETEPTDPPQPDTQPNTPPEPNPDPQPVPPAP 241 V E P P+ PEP P P+P AP Sbjct: 50 VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAP 86 Score = 30.3 bits (68), Expect = 0.010 Identities = 8/26 (30%), Positives = 10/26 (38%) Query: 217 PPQPDTQPNTPPEPNPDPQPVPPAPD 242 P QP P P+P+P P Sbjct: 56 EPPQAVQPPPEPVVEPEPEPEPIPEP 81
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 29.4 bits (66), Expect = 0.038 Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 351 DLRDVSDRVLRVLLNEFRRSIEQLQQNVFI 380 D+RDVS RVL L+ S+ + + I Sbjct: 130 DIRDVSKRVLGHLIGVETGSLATIAEETVI 159
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 29.2 bits (65), Expect = 0.049 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 7/66 (10%) Query: 577 LMTEAHWRVEQVRISQVSLFDAVPILESLPSALPVETLPTVQTDADPPPPIEPVQPVAKP 636 L T H +E +Q PI ++ + +E VQ +P EP Sbjct: 28 LYTSVHQVIELPAPAQ-------PISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPE 80 Query: 637 PETPPP 642 P P Sbjct: 81 PPKEAP 86
>PF05272#Virulence-associated E family protein Length = 892 Score = 563 bits (1452), Expect = 0.0 Identities = 141/468 (30%), Positives = 207/468 (44%), Gaps = 33/468 (7%) Query: 399 ETPTKPAATSAAAKQP--EWDGREAENGAHTWEQD----LARSDKGTLLPTLGNVHMILS 452 E P K ++ A P G + E+ W D L + L P + L Sbjct: 401 EPPKKRDPSAGAGTDPGGPGGGDDGEDPFGEWLDDEVARLRLRGRWLLKPRRAALIEALR 460 Query: 453 NHKAWQGVIEQDDFGGRVMKRKAPPFPQGVTGEWTDMDDQRCALWLSQRYG-LSVRTDIV 511 + A G + D+ + + +A P+ + G D D R A ++ YG Sbjct: 461 SAPALAGCVAFDELREQPVAVRAFPWRKA-PGPLEDADVLRLADYVETTYGTGEASAQTT 519 Query: 512 MNAVLLVADATHFHDVREYLEGLKWDGVPRVRSMPSTYLRVADS-------EYVQLAFMK 564 A+ + AD H R++++ +WD VPR+ L Y+QL Sbjct: 520 EQAINVAADMNRVHPFRDWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKY 579 Query: 565 WMIAAVARVMEPGCKVDNVLILEGKQGHRKSTALKVLAGAPWFTDTPIQIG-NKDTYAVL 623 ++ VARVMEPGCK D ++LEG G KST + L G +F+DT IG KD+Y + Sbjct: 580 ILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQI 639 Query: 624 AGKWVIELAELDSLNKADSSAVKSFFATAVDRFRNFYGKRATDVPRQCVFAGSVNFDTYL 683 AG EL+E+ + +AD+ AVK+FF++ DR+R YG+ D PRQ V + N YL Sbjct: 640 AGIVAYELSEMTAFRRADAEAVKAFFSSRKDRYRGAYGRYVQDHPRQVVIWCTTNKRQYL 699 Query: 684 KDESGNRRYWPLRVGGLVDIDGIVAVRDQLWAEAVHLYRTGVVWHVE-EHERPLFEIEQA 742 D +GNRR+WP+ V G ++ + R QL+AEA+HLY G + E E F EQ Sbjct: 700 FDITGNRRFWPVLVPGRANLVWLQKFRGQLFAEALHLYLAGERYFPSPEDEEIYFRPEQE 759 Query: 743 ERYEGDVYEDKI--------AKALE------FVSRTTMEEI--LADILKLDTSKWTLAEQ 786 R + ++ A A E + TT I L L D K + + Sbjct: 760 LRLVETGVQGRLWALLTREGAPAAEGAAQKGYSVNTTFVTIADLVQALGADPGKSSPMLE 819 Query: 787 RRIGKALKSLGWVRKRESTGSRGWYYVSEQQEPEVERELVAAGDDDSP 834 ++ L GW RE++G R Y+ Q P V E A +P Sbjct: 820 GQVRDWLNENGWEYLRETSGQRRRGYMRPQVWPPVIAEDKEADQAHAP 867
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 27.7 bits (61), Expect = 0.014 Identities = 15/27 (55%), Positives = 18/27 (66%) Query: 79 ERAARACAALATKAERHAFRDQLTDRL 105 E+AARA AA +A+ A RD LT RL Sbjct: 68 EQAARAKAAAEAQAKAKANRDALTQRL 94
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.043 Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 6/104 (5%) Query: 17 AAPAFAQNIAVVNGTP-IPKSRADAMVAQLVQQGQTDSPQLQQAVRQELVNREILMQEAI 75 A V P P + + Q+ +T Q A NRE+ + Sbjct: 1015 EEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAK- 1073 Query: 76 REGIPNRPDVKAQVAVAQQTVVLRSMIESFLKKNQPTDAEVKAR 119 N VAQ + + K+ + E KA+ Sbjct: 1074 ----SNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAK 1113
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 41.6 bits (97), Expect = 1e-05 Identities = 34/192 (17%), Positives = 73/192 (38%), Gaps = 15/192 (7%) Query: 92 KVLVEGLQRAKALSIEEQETQFSCDVMPLEPDHADSAETEALRRAIVSQFDQYVKLNKKI 151 L + L+ A S + + + A A+ E ++ K + Sbjct: 193 AELEKALEGAMNFSTADSAKIKTLEAE-KAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 152 PPEILTSLSGIDEAGRLADMIAERLPLKLDQKQHILEMFPVIERLEHLLAQLEAEIDILQ 211 E + E + + + + + LE A LE + +L Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE---KAALEAEKADLEHQSQVLN 308 Query: 212 VEKRIRGRVKRQMEKSQREYYLNEQVKAIQKELGEGEEGAD--LEELEKRINAARMPKEA 269 R ++R ++ S+ +Q++A ++L E + ++ + L + ++A+R EA Sbjct: 309 AN---RQSLRRDLDASREAK---KQLEAEHQKLEEQNKISEASRQSLRRDLDASR---EA 359 Query: 270 KKKADAELKKLK 281 KK+ +AE +KL+ Sbjct: 360 KKQLEAEHQKLE 371 Score = 30.0 bits (67), Expect = 0.040 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 18/103 (17%) Query: 201 AQLEAEIDILQVEKRI----RGRVKRQMEKSQRE--------YYLNEQVKAIQKELGEGE 248 QLEAE L+ + +I R ++R ++ S+ N ++ A++K E E Sbjct: 361 KQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELE 420 Query: 249 EGADLEELEKRINAARMPKEAKK------KADAELKKLKLMSP 285 E L E EK A++ EAK K EL KL+ Sbjct: 421 ESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAGKA 463
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.013 Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 16/113 (14%) Query: 43 LCNEIIRDEAAAAGVEASLSRSDLPSPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK 102 L E A PS E ++G+ A + + Sbjct: 102 LPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAA-----------MQEIY 150 Query: 103 HLDKKDDVELSKSNILLIGPTGSGKTLLAQTLARL---LNVPFVIADATTLTE 152 + + + + +++ G +G+GK L+A+ L N PFV + + Sbjct: 151 RVLAR--LMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR 201
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 27.5 bits (61), Expect = 0.041 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Query: 78 VASPTLQDVHEVFEMRRIIELAVVERLATGPG------AKRLKGVAALIDKERKA 126 V SP + E +++++E V+ + G G +KGV A+IDK+ Sbjct: 165 VPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAG 219
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.7 bits (90), Expect = 4e-05 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 4/111 (3%) Query: 271 GGRIAFGLLGDRLGAKRMLVAGLLAQALGALGYYFVRTLDGFYVVATLFGFIYAGVMP-L 329 G +G L D+LG KR+L+ G++ G++ + + ++A A P L Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPAL 123 Query: 330 YAVLARENFPLRMMGTVIGGCAMAGSLGMAAGPVAGGLIVDALGSYGWLYL 380 V+ P G G ++G GP GG+I + W YL Sbjct: 124 VMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI---HWSYL 171
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 56.4 bits (136), Expect = 2e-10 Identities = 63/295 (21%), Positives = 101/295 (34%), Gaps = 62/295 (21%) Query: 274 KVAILDGGLPKQHA-IGPWLRSYRVLDEDADDDTEGLE----HGLAV--TSAFLFGPIQP 326 KVA+LD G H + + R +D + D E + HG V T A Sbjct: 44 KVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYNGHGTHVAGTIAATENENGV 103 Query: 327 NGAAARPFAYVDHLRVLDKDAETEDPLELYRTLGFVEQVLLSRQYQF------VNLSLGP 380 G A P A + ++VL+K G + ++ Y +++SLG Sbjct: 104 VGVA--PEADLLIIKVLNKQGS-----------GQYDWIIQGIYYAIEQKVDIISMSLGG 150 Query: 381 DLPIEDTDVHAWTSVIDDLLSDGDTLMTVAIGNNGERDRPSGNARVQVPSDCVNALAVGA 440 DV + ++ L+ A GN G D + P ++VGA Sbjct: 151 P-----EDVPELHEAVKKAVASQ-ILVMCAAGNEG--DGDDRTDELGYPGCYNEVISVGA 202 Query: 441 SNDTEAGWARAPYSAIGPGRSPGVVKPDLMAFGGDAAKYFHVLASGKKPSLLPQLGTSFA 500 N + +S DL+A G D +L++ GTS A Sbjct: 203 INFD---RHASEFSNSNNE-------VDLVAPGED------ILSTVPGGKYATFSGTSMA 246 Query: 501 SPYLLRSAVGIRAIL--------GTELTPLAIKALLVHAAEPLEHDKLEVGWGKV 547 +P+ G A++ +LT + A L+ PL + G G + Sbjct: 247 TPH----VAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPKMEGNGLL 297
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.7 bits (170), Expect = 4e-17 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 6/189 (3%) Query: 2 AVGTRDALIQTAENLMRTRGYTAFSYADLSEAVGIRKASIHHHFPTKEDLGAAIVEEYID 61 A TR ++ A L +G ++ S ++++A G+ + +I+ HF K DL + I E Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 62 RVR-----TEFGRIEMQHEHVIGRLEAFLQIFRSSADGGLLPLCGALAAEMSALPLSLQQ 116 + + + L L+ + LL E +QQ Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 117 LTQRFFDMQLSWLSRALEQGIKRKEIPEGSGAKHKAFLLLSILEGSCFINWATRDEDPLS 176 + + + L+ I+ K +P + A ++ + NW + Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI-SGLMENWLFAPQSFDL 187 Query: 177 PSVVRLIVE 185 R V Sbjct: 188 KKEARDYVA 196
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 124 bits (312), Expect = 1e-36 Identities = 81/260 (31%), Positives = 125/260 (48%), Gaps = 9/260 (3%) Query: 1 MNTKQFEGRKLLVVGGTSGIGLEVARMVAEQGGAVVVIGNRAEKAEVARQELAAIAGERK 60 MN K EG+ + G GIG VAR +A QG + + EK E L A A R Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEA--RH 58 Query: 61 AAAYASDLSDAASVKSLLGRLAAEQGDIDLLVNTAGIYYPKAFLEHSVEDYNNFLDLNRS 120 A A+ +D+ D+A++ + R+ E G ID+LVN AG+ P S E++ +N + Sbjct: 59 AEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNST 118 Query: 121 LFFITQQVAASLVARKKPGSIVNVTAVAARQAIETVPASAYSMAKIGLDAMTRHVAAELA 180 F + + + ++ GSIV V + A + +AY+ +K T+ + ELA Sbjct: 119 GVFNASRSVSKYMMDRRSGSIVTVGSNPAG--VPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 181 EQGIRVNSVSPAMVETKI-----FERFIPGEHLGSALDGFNAFHPLGRNGTPRDVAETVI 235 E IR N VSP ET + + + + +L+ F PL + P D+A+ V+ Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 236 FLLSDKASWVTGAVWDVDGG 255 FL+S +A +T VDGG Sbjct: 237 FLVSGQAGHITMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 46.4 bits (110), Expect = 1e-07 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 1/158 (0%) Query: 32 TISADLHASVAQVGTAVTAYALGAVIGAPGLTALATRWPRKRLLLVAMGLFTLGNAVVSL 91 I+ D + A TA+ L IG L+ + KRLLL + + G+ + + Sbjct: 39 DIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFV 98 Query: 92 SDALTPMLV-ARFASGLGHGVFLAVASSVATQLAGRHRAGAAVAVVFGGLTLALALGVPL 150 + +L+ ARF G G F A+ V + + G A ++ + + +G + Sbjct: 99 GHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158 Query: 151 GTYLGSVLSWQVIFMAVAASGAVGFLGLLALMPTDRDD 188 G + + W + + + + L R Sbjct: 159 GGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIK 196
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 31.2 bits (70), Expect = 0.012 Identities = 32/140 (22%), Positives = 45/140 (32%), Gaps = 7/140 (5%) Query: 280 AVGAAGTAVAIGAAATGLGGAVVAGARMAPAAAKLAGAGARAATSAAGSARLAFQAGSAA 339 A GA +GA+ L G + G R A AA GA A R AG A Sbjct: 213 ASGAPAAVSVLGASELTLDGGHITGGRAAGVAAM---QGAVVHLQRATIRRGDAPAGGAV 269 Query: 340 AGGGARGAMA----GSSNVAKTGAQSFGRSAASGASGAAQKMTGSFRAGWNGTEAGGGAA 395 GG G G +G + + AQ + + G G Sbjct: 270 PGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARV 329 Query: 396 SGAAGSGQAAAGEATDSAAS 415 + + GS A G ++ + Sbjct: 330 TVSGGSLSAPHGNVIETGGA 349
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 59.5 bits (144), Expect = 6e-13 Identities = 42/216 (19%), Positives = 70/216 (32%), Gaps = 12/216 (5%) Query: 20 YQAAAQVWD-ERIGSARVQAKNWRLMAFGCLVLALLMAGGLVWRSAQSIVTPYVIEVDQS 78 Y A W+ +++ +A K ++A LA + + V PYVI VD++ Sbjct: 13 YFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRN 72 Query: 79 GQVRTVGE---AATPYRPADAQIAHHLARFVTLVRSLSIDPIVVRQNWLDAYDYTTDKGA 135 ++ +A + LA +V + + + Sbjct: 73 TGEASIAAKLHGDATITYDEAVRKYFLATYVRYRE--GWIAAAREEYFDAVMVMSARPEQ 130 Query: 136 A-VLNDYASKN--DPFARVGRE-SVTVQITSVTRASDASFNVRWTEQRFVNGVPAGTERW 191 Y + N P + V V+I V+ V +T + V G + Sbjct: 131 DRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDA 189 Query: 192 NAVLSI-VLQTPRTEQRLRKNPLGIYVNGLSWSREL 226 A + V TP E KNPLG V E+ Sbjct: 190 VATIKYKVDGTPSKEVDRFKNPLGYQVESYRADVEV 225
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 28.8 bits (64), Expect = 0.025 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 3/99 (3%) Query: 27 QGKPPPSISLDEPVQAQPLPELPKPVEVV---AVPEPLALPAQLKPLPEVGEAAPVPEPA 83 +PPP ++ + +P+PE PK VV P+P P +K + + E Sbjct: 65 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESR 124 Query: 84 DEKVRVSRANAEARIAPTREGYVNAIQVWPYSDGALYQV 122 + A A + + AL + Sbjct: 125 PASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRN 163
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 28.4 bits (63), Expect = 0.006 Identities = 13/44 (29%), Positives = 14/44 (31%) Query: 34 VPAPVYVAPAPVYAPPPPPVVYQPAPVYAPAPVYAPAPVYAPAP 77 V P P P P P + APV P P P P Sbjct: 61 VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK 104 Score = 27.6 bits (61), Expect = 0.010 Identities = 12/43 (27%), Positives = 12/43 (27%) Query: 35 PAPVYVAPAPVYAPPPPPVVYQPAPVYAPAPVYAPAPVYAPAP 77 P V P P P P APV P P P Sbjct: 56 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 98
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 624 bits (1610), Expect = 0.0 Identities = 241/1069 (22%), Positives = 427/1069 (39%), Gaps = 57/1069 (5%) Query: 4 LVRLALARPYTFIVLALLILIAGPLAALRTPTDIFPDIRIPVISVVWNYAGLQPADMAGR 63 + + RP VLA+++++AG LA L+ P +P I P +SV NY G + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 64 IVTYYERTLGTTVNDVAHIESQSFRSYGI-VKIFFQPSVDIRTATAQVTSISQTVLKQMP 122 + E+ + ++++ ++ S S + + + + FQ D A QV + Q +P Sbjct: 61 VTQVIEQNM-NGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLP 119 Query: 123 PGTTPPQILNYNASTVPVLQLALTSDTLNEQQ--LGDYATNVIRPQLLSVAGVAIPSPYG 180 I +S+ ++ SD Q + DY + ++ L + GV +G Sbjct: 120 QEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 181 GKVRQVQIDLDPQALQAKGLSAQDVATALAQQNQIIPAGT------QKIGRFEYNIRLND 234 + ++I LD L L+ DV L QN I AG + +I Sbjct: 180 AQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 235 SPLTIDQLNALPIRTV-NGAVIFMRDVAHVRDGFPPQGNIVRVDGRRAVLMSVLKSGSAS 293 ++ + +R +G+V+ ++DVA V G I R++G+ A + + + A+ Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 294 TLDIIAGVKAQLPRIEATLPPSLRLVVMGDQSVFVKGAVSGVAREGLIAAALTSAMILLF 353 LD +KA+L ++ P ++++ D + FV+ ++ V + A L ++ LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 354 LGSWRSTLIIAASIPLAVLAAIAALAAAGETLNVMTLGGLALAVGILVDDATVTIENV-N 412 L + R+TLI ++P+ +L A LAA G ++N +T+ G+ LA+G+LVDDA V +ENV Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 WHLEQGKDVRSAILDGASQIVAPAFVSLLCICIVFVPMLLLDGVARFLFVPMAEAVIFAM 472 +E + A SQI + + VF+PM G ++ + ++ AM Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 473 IASFVLSRTFVPMMARYLLRPHAAHPAAVLAPHGAPFPTPRSRNPLVAFQQGFERRFAAL 532 S +++ P + LL+P +A F F F Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEH----------------HENKGGFFGWFNTTFDHS 522 Query: 533 RTGYRAVLGLALAHRARFVVLFLTAVALSFALVPGLGRNFFPSVDAGEIALHVRAPIGTR 592 Y +G L R+++++ VA L L +F P D G ++ P G Sbjct: 523 VNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGAT 582 Query: 593 IEETAALFDRVERTVRGVVPPRALASIVDNMGLPNSGINLTYSNSGTIGPQDGDILVSLT 652 E T + D+V L + N+ + ++S G VSL Sbjct: 583 QERTQKVLDQVTD--------YYLKNEKANVESVFTVNGFSFSGQ---AQNAGMAFVSLK 631 Query: 653 GEH-----APTADYV-KQLRTVLPRAFPGVTFSFLPADIVSQILNFGAPAPIDVQVTGPD 706 +A+ V + + L + G F IV + G Sbjct: 632 PWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELG-TATGFDFELIDQAGLG 690 Query: 707 LAANRAYATELLRRIRTVPG-VADARVQQASTYPQFTVSVDRALAAQLGITEQDVTNAVV 765 A +LL P + R QF + VD+ A LG++ D+ + Sbjct: 691 HDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTIS 750 Query: 766 ASLSGTSQVSPTYWLDPHNGVSYPIVAQTPQYRMTSLSDLRALPVTGRSGAPQLLGGLAT 825 +L G + V+ G + Q D+ L V +G T Sbjct: 751 TALGG-TYVNDFI----DRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTT 805 Query: 826 IVRSQTDAVVSHYDIAPLDDIFATTQDRDLGAVSADIARVLHASAADLPKGSRVTVRGQV 885 + Y+ P +I G S D ++ A+ LP G G Sbjct: 806 SHWVYGSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWTGMS 862 Query: 886 QTMSSAFGGLLAGLAGAVLLIYLLIVVNFHSWRDAFVIVSALPAALAGIVWMLFVTRTPL 945 + A +A + ++++L + + SW ++ +P + G++ + Sbjct: 863 YQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKN 922 Query: 946 SVPALTGAILCMGVATANSILVVTFARERLAH-TADATVAALEAGFTRFRPVMMTALAMI 1004 V + G + +G++ N+IL+V FA++ + A L A R RP++MT+LA I Sbjct: 923 DVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFI 982 Query: 1005 IGMAPMALGLGDGGEQNAPLGRAVIGGLLCATVATLVFVPVVFSLVHRR 1053 +G+ P+A+ G G +G V+GG++ AT+ + FVPV F ++ R Sbjct: 983 LGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 89.5 bits (222), Expect = 4e-20 Identities = 63/358 (17%), Positives = 133/358 (37%), Gaps = 15/358 (4%) Query: 714 ATELLRRIRTVPGVADARVQQASTYPQFTVSVDRALAAQLGITEQDVTNAVVA--SLSGT 771 A+ + + + GV D VQ + +D L + +T DV N + Sbjct: 159 ASNVKDTLSRLNGVGD--VQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAA 216 Query: 772 SQVSPTYWLDPHNGVSYPIVAQTPQYRMTSLSDLRALPV-TGRSGAPQLLGGLATIVR-S 829 Q+ T L P ++ I+AQT R + + + + G+ L +A + Sbjct: 217 GQLGGTPAL-PGQQLNASIIAQT---RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGG 272 Query: 830 QTDAVVSHYDIAP--LDDIFATTQDRDLGAVSADIARVLHASAADLPKGSRVTV-RGQVQ 886 + V++ + P I T L + I L P+G +V Sbjct: 273 ENYNVIARINGKPAAGLGIKLATGANAL-DTAKAIKAKLAELQPFFPQGMKVLYPYDTTP 331 Query: 887 TMSSAFGGLLAGLAGAVLLIYLLIVVNFHSWRDAFVIVSALPAALAGIVWMLFVTRTPLS 946 + + ++ L A++L++L++ + + R + A+P L G +L ++ Sbjct: 332 FVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSIN 391 Query: 947 VPALTGAILCMGVATANSILVVTFARERLAHTADATVAALEAGFTRFR-PVMMTALAMII 1005 + G +L +G+ ++I+VV + A E ++ + ++ A+ + Sbjct: 392 TLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSA 451 Query: 1006 GMAPMALGLGDGGEQNAPLGRAVIGGLLCATVATLVFVPVVFSLVHRRDRAPHSESPS 1063 PMA G G ++ + + + L+ P + + + + A H E+ Sbjct: 452 VFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKG 509
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.5 bits (100), Expect = 2e-06 Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 28/124 (22%) Query: 90 GYLHAWYVDIGAHVKAGQLLASIDTPDLDQQLQQARADLQSATANE-RLAAVTAARWSEM 148 + V G V+ G +L + + + ++ L A + R ++ + Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 149 LAQDSVS---------------------------RQEADEKRSDLDAKRAAVAASTANVR 181 L + + + + +K +LD KRA A + Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 182 RLEA 185 R E Sbjct: 225 RYEN 228 Score = 34.8 bits (80), Expect = 5e-04 Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 4/139 (2%) Query: 117 LDQQLQQARADLQSATANERLAAVTAARWSEMLAQDSVSRQEADEKRSDLDAKRAAVAAS 176 L+Q+ + A + +L + + S V++ +E L + Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 177 TANVRRLEALESFKRLTAPFDGVVTARKT-DVGALIDAGSGNGAELFTVSDARRLRLYVH 235 T + + E + + AP V K G ++ + V + L + Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE---TLMVIVPEDDTLEVTAL 371 Query: 236 IPQDDAGAIRAGMHVALTV 254 + D G I G + + V Sbjct: 372 VQNKDIGFINVGQNAIIKV 390
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.6 bits (191), Expect = 1e-18 Identities = 31/120 (25%), Positives = 49/120 (40%) Query: 2 RVLTVEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGLA 61 +L +DDA + L+ G++V N + D + D ++P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 ILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQA 121 +L ++ D PVL++SA I+ G DYL KPFD EL I L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 41.7 bits (98), Expect = 4e-06 Identities = 71/346 (20%), Positives = 116/346 (33%), Gaps = 13/346 (3%) Query: 50 FGLALALQNLVWGIAQPLTGMIADRFGSVRVIVAGMLLYAAGLVTMALAASIGVFTAGAG 109 +G+ LAL L+ P+ G ++DRFG V++ + A MA A + V G Sbjct: 45 YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGR- 103 Query: 110 LVIGIALSGSAFASIYGALSRLFPPDRRGWALGVAGAIGGLGQFCMVPVAQVLIGGIGWQ 169 +V GI +G+ A ++ + D R G A G G PV L+GG Sbjct: 104 IVAGI--TGATGAVAGAYIADITDGDERARHFGFMSACFGFG-MVAGPVLGGLMGGFSPH 160 Query: 170 HAFVALALVAALLAPLAVLVRDRPAQAASQADGTDQ-SIAAAVREAFTHRGFWLLNAGFF 228 F A A + L + + + + + A+ R A L A FF Sbjct: 161 APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFF 220 Query: 229 ACGFQLAFIATHLPAYLLDH-GLPARHASVALALIALTN-VAGTYACGHLGGVLRRKYVL 286 A + D A ++LA + + +A G + L + L Sbjct: 221 IMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRAL 280 Query: 287 --SVLYLVRALAMAAFVAAPLSPVSVYVFAAVMGFTWLGTVPLTNGVISQVFGVRYIATL 344 ++ + AF + V A G +P ++S+ L Sbjct: 281 MLGMIADGTGYILLAFATRGWMAFPIMVLLASGGI----GMPALQAMLSRQVDEERQGQL 336 Query: 345 FGFVFFGHQLGSFFGVWLGALVYDATHSYLPLWIGSIALGVLAALL 390 G + L S G L +Y A+ + W + L Sbjct: 337 QGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCL 382
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 76.2 bits (187), Expect = 2e-19 Identities = 47/164 (28%), Positives = 66/164 (40%), Gaps = 9/164 (5%) Query: 6 PEAVEDADLDGWRAVFDTNVFGTMTLTQEIVPHMKRQKRGAIVMINTQATRKPFAGESGY 65 P + + W A F N G ++ + +M ++ G+IV + + P + Y Sbjct: 98 PGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAY 157 Query: 66 AVSKGALAVAAKYLARELGVHGICANSIHMGWMWSVPTQTYFRQAAAEYGMTEEQIIAPI 125 A SK A + K L EL + I N + G S T + A E G EQ+I Sbjct: 158 ASSKAAAVMFTKCLGLELAEYNIRCNIVSPG---STETDMQWSLWADENG--AEQVIKGS 212 Query: 126 ASN----IALAKLPTDDDCARAALFLASDYANAVTGATLDANGG 165 I L KL D A A LFL S A +T L +GG Sbjct: 213 LETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGG 256
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 32.7 bits (74), Expect = 0.005 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 15/88 (17%) Query: 448 PVSDPKSRWVKVQPKTVKMPAEQPEPPAPAGKGKHKPKPAKKPEP--------------I 493 P + V+P+ P +P AP K KPKP KP+P + Sbjct: 58 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 117 Query: 494 ETSTGSPFWVDSSLGLI-NQMTTAPVKG 520 E+ SPF + L + T A K Sbjct: 118 ESRPASPFENTAPARLTSSTATAATSKP 145
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 30.7 bits (69), Expect = 0.009 Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 10/96 (10%) Query: 138 YAVILAGWASNSKYAFLGAMR-------AAAQMVSYEISMGFALVLVLMTAGSLNLSEIV 190 Y GW+ F+ A Y+++ + G + Sbjct: 29 YTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPY---K 85 Query: 191 GSQQHGFFAGHGVNFLSWNWLPLLPAFVVYFVSGIA 226 GS ++G + GV + P+ +Y G Sbjct: 86 GSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGM 121
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 94.0 bits (233), Expect = 4e-25 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 19/256 (7%) Query: 8 KAVLITGASRGIGRATAVLAAKRGWDV-GINYARDAAAAELTARAVRDAGARACVVAGDV 66 K ITGA++GIG A A A +G + ++Y + E +++ A DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKL--EKVVSSLKAEARHAEAFPADV 66 Query: 67 ANEADVVAMFDAVTAAFGRLDALVNNAGIVAPSMPLADMPADRLRRMFDTNVLGAYLCAR 126 + A + + + G +D LVN AG++ P + + + F N G + +R Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 127 EAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVD-YAGSKGAVDSLTIGLAKELGPHGV 185 ++ + R G+IV V S + G P + YA SK A T L EL + + Sbjct: 126 SVSKYM---MDRRSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 186 RVNAVRPGLIETEIHAS-----GGQPGRAARLGAQ----TPLGRAGEAQEIAEAIVWLLG 236 R N V PG ET++ S G PL + + +IA+A+++L+ Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 237 DAASYTTGALLDIGGG 252 A + T L + GG Sbjct: 241 GQAGHITMHNLCVDGG 256
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 31.1 bits (70), Expect = 0.015 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 8/84 (9%) Query: 690 PPPVLKDFPAVYLTSFHLPAEQAALLDPLIARYPNLTAIDVAPILAQLQRMMLQVVGAVQ 749 P D P S+ +A LL + Y V A + ++ ++ Sbjct: 10 QMPTASDMPQ-NKVSWVPDPNRAVLLIHDMQNY------FVDAFTAGA-SPVTELSANIR 61 Query: 750 FLFGFTLAAGVLVLYTALAGSRDE 773 L + G+ V+YTA GS++ Sbjct: 62 KLKNQCVQLGIPVVYTAQPGSQNP 85
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.5 bits (87), Expect = 2e-05 Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 127 RTQMMEALERNGGNKTKTATEFGISRQRLAQIIQQ 161 ++ AL GN+ K A G++R L + I++ Sbjct: 438 YPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 124 bits (313), Expect = 6e-37 Identities = 85/254 (33%), Positives = 135/254 (53%), Gaps = 15/254 (5%) Query: 4 LQGKRALVTGGSRGIGAAIAKRLAADGADVAITYEKSAERARAVVADIEALGRRAVAIQA 63 ++GK A +TG ++GIG A+A+ LA+ GA +A + + E+ VV+ ++A R A A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIA-AVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 64 DSADPVAVRGAVDHAAQTLGGLDILVNNAGIFRAGALDDLTLDDIDATLNVNVRAVIVAS 123 D D A+ + +G +DILVN AG+ R G + L+ ++ +AT +VN V AS Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 124 QAAARHL--GEGGRIVSTGSCLATRVPDAGMSLYAASKAALIGWTQGLARDLGARGITVN 181 ++ ++++ G IV+ GS VP M+ YA+SKAA + +T+ L +L I N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSN-PAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 182 LVHPGSTDTDMNPA--DGEHAGAQRSRMATPQY---------GKAEDVAALVAFVVGPEG 230 +V PGST+TDM + E+ Q + + + K D+A V F+V + Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 231 RSINGTGLTIDGGA 244 I L +DGGA Sbjct: 244 GHITMHNLCVDGGA 257
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.9 bits (129), Expect = 3e-11 Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 7/199 (3%) Query: 1 MAERGRPRSFD-KEAALDRAMEVFWRLGYEGASMTDLTAAMGIASPSLYAAFGSKEALFR 59 MA + + + + ++ LD A+ +F + G S+ ++ A G+ ++Y F K LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 60 QAIE-HYRETEGREIWDGVEQAGSAHDAIENYLMQTARVFTRLSKPAGCLIVLSALHPAE 118 + E E+ + G + L+ +++ L++ H E Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLEST--VTEERRRLLMEIIFHKCE 118 Query: 119 RSD---TVRQMLIAMREQTVAALRTRLGEGVAAGEISAHADLDAIARYYVTVQQGMSIQA 175 V+Q + ++ + L + A + A A G+ Sbjct: 119 FVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENW 178 Query: 176 RDGASRRDLEAVAQAALAA 194 DL+ A+ +A Sbjct: 179 LFAPQSFDLKKEARDYVAI 197
>cloacin#Cloacin signature. Length = 551 Score = 32.8 bits (74), Expect = 2e-04 Identities = 21/72 (29%), Positives = 25/72 (34%) Query: 36 GYAYGPAYGAAPVYGTVNIWGGGGGGRDWDRGHRDYRRWDRDRGDHGGWGRGGGRRGDWN 95 G+ G + + G G GGG D + W G WG G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 96 EGGGGGGRGEGG 107 G GGG G GG Sbjct: 68 NGNSGGGSGTGG 79
>SYCECHAPRONE#Gram-negative bacterial type III secretion SycE chaperone signature. Length = 130 Score = 25.4 bits (55), Expect = 0.011 Identities = 8/28 (28%), Positives = 16/28 (57%) Query: 18 KPTLEAEQRKGRSLLWDKQPIDLDERAE 45 KP L ++ G +LW++QP++ + Sbjct: 75 KPILSWDEVGGHPVLWNRQPLNSLDNNS 102
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 42.2 bits (99), Expect = 1e-06 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 7/174 (4%) Query: 49 AQRVISLAPHATELVYAAG----GGAKLVGTVTYSDYPPAAQAVPRVGDNKALDLERIAA 104 R+++L EL+ A G G A + + PP +V VG +LE + Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTE 94 Query: 105 LKPDLIVVWRHGNAERQTDALRALHIPLFFSEPKHLHDVA-TSLRQLGTLLGTAPVADAA 163 +KP +V + A A FS+ K +A SL ++ LL A+ Sbjct: 95 MKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETH 154 Query: 164 AASFSRDIAALRARYAARA--PVTMFFQVWDRPLTTLNGAHLFNEVIALCGGRN 215 A + I +++ R+ R P+ + + R + LF E++ G N Sbjct: 155 LAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPN 208
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.009 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 10/72 (13%) Query: 8 TADDMSCAAVDLTLKAGERTLLDGFTQAFRPGEIWCVA-------GPNGAGKTTLLATLA 60 T DD + G+ L+ + PG C G G GK+TL+ TL Sbjct: 561 TPDDYKPRRLRYLQLVGKYILMGHVARVMEPG---CKFDYSVVLEGTGGIGKSTLINTLV 617 Query: 61 GLRQPAGGHVEI 72 GL + H +I Sbjct: 618 GLDFFSDTHFDI 629
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 625 bits (1613), Expect = 0.0 Identities = 174/685 (25%), Positives = 298/685 (43%), Gaps = 77/685 (11%) Query: 9 RYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAAT 68 + NIG+ AH+DAGKTT TE +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TAFWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQPQSETVWR 128 + W+ ++NIIDTPGH+DF EV RS+ VLDGA ++ + GVQ Q+ ++ Sbjct: 62 SFQWEN-------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 129 QANKYKVPRIAFVNKMDRVGADFFRVQRQIGERLKGVAVPIQIPIGAEEHFQGVVDLVKM 188 K +P I F+NK+D+ G D V + I E+L V Q V M Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----------KVELYPNM 164 Query: 189 KAIVWDDESQGVKFSYEEIPANLVELAHEWRGKMVEAAAEASEELLEKYLHDHESLTEDE 248 + + Q + E +++LLEKY+ +SL E Sbjct: 165 CVTNFTESEQ------------------------WDTVIEGNDDLLEKYM-SGKSLEALE 199 Query: 249 IKAALRQRTIANEIVPMLCGSAFKNKGVQAMLDAVIDYLPSPVDVPAILGHDFADPEKPA 308 ++ R + P+ GSA N G+ +++ + + S Sbjct: 200 LEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH---------------- 243 Query: 309 ERHPSDDEPFSSLAFKIMTDPFVGQLIFFRVYSGVVNSGDTVLNATKDKKERLGRILQMH 368 FKI +L + R+YSGV++ D+V + K+K ++ + Sbjct: 244 ----RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSI 298 Query: 369 ANERKEIKEVRAGDIAAAVG--LK-EATTGDTLCDPTKPIILEKMEFPEPVISQAVEPKT 425 E +I + +G+I LK + GDT P + E++E P P++ VEP Sbjct: 299 NGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQR----ERIENPLPLLQTTVEPSK 354 Query: 426 KADQEKMGLALNRLAQEDPSFRVQTDEESGQTIISGMGELHLEILVDRMKREFGVEATVG 485 +E + AL ++ DP R D + + I+S +G++ +E+ ++ ++ VE + Sbjct: 355 PQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIK 414 Query: 486 KPQVAYRETVRTTASDVEGKFVKQSGGRGQYGHAVITLEPNP-GKGYEFLDEIKGGVIPR 544 +P V Y E A E + + +++ P P G G ++ + G + + Sbjct: 415 EPTVIYMERPLKKA---EYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQ 471 Query: 545 EFIPAVDKGITETLKSGVLAGYPVVDVKVHLTFGSYHDVDSNENAFRMAGSMAFKEAMRR 604 F AV +GI + G L G+ V D K+ +G Y+ S FRM + ++ +++ Sbjct: 472 SFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKK 530 Query: 605 AKPVLLEPMMAVEVETPEDFMGNVMGDLSSRRGIVQGMEDIAGGGGKLVRAEVPLAEMFG 664 A LLEP ++ ++ P++++ D + + ++ E+P + Sbjct: 531 AGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ--LKNNEVILSGEIPARCIQE 588 Query: 665 YSTSLRSATQGRATYTMEFKQYAET 689 Y + L T GR+ E K Y T Sbjct: 589 YRSDLTFFTNGRSVCLTELKGYHVT 613
>cloacin#Cloacin signature. Length = 551 Score = 47.8 bits (113), Expect = 7e-08 Identities = 42/100 (42%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Query: 383 SGGHGNG-NGGHGNGNGNGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 441 SGG G G N G + +GN NGG G G GGG G G GGG G G GGG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 442 GGGGSGGSGGGGGSGGSGGSGGAGGSGGQGNGGGSTGGHG 481 G G G GGGSG G G ST G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAG 101 Score = 46.6 bits (110), Expect = 2e-07 Identities = 33/79 (41%), Positives = 40/79 (50%) Query: 361 GGNGGGNGGGNGGGNGGGHGGGSGGHGNGNGGHGNGNGNGNGGGGGGGGGGGGGGGGGGG 420 GG+G G+ G +G +GG +G G G+G + N GGG G G GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 421 GGGGGGGGGGGGGGGGGGG 439 G GGG G GGG G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 46.2 bits (109), Expect = 2e-07 Identities = 40/79 (50%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 337 GGNGGGHGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGG---NGGGHGGGSGGHGNGNGGH 393 GG+G GH G +G NGG G G GGG G+G N G G GSG H G GH Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 394 GNGNGNGNGGGGGGGGGGG 412 GNG GNGN GGG G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 45.9 bits (108), Expect = 3e-07 Identities = 36/80 (45%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 353 GGNGGGNGGGNGGGNGGGNGGGNGGGHGGGSGGHGNGNGGHGNGNGNGNGGGGGGGGGGG 412 GG+G G+ G +G NGG G G GGG G+G N G G+G G GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGG-ASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 413 GGGGGGGGGGGGGGGGGGGG 432 G GGG G GGG G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 45.9 bits (108), Expect = 3e-07 Identities = 41/109 (37%), Positives = 46/109 (42%), Gaps = 1/109 (0%) Query: 357 GGNGGGNGGGNGGGNGGGNGG-GHGGGSGGHGNGNGGHGNGNGNGNGGGGGGGGGGGGGG 415 GG+G G+ G +G NGG G GG +G+G N G G G G GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 416 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGSGGSGGGGGSGGSGGSGGA 464 G GGG G GGG G GG G S G G S GA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 45.5 bits (107), Expect = 4e-07 Identities = 32/79 (40%), Positives = 37/79 (46%) Query: 273 GDGGGNGGGNGVGNGGGHGGGHGGGGGGGGHGGGNGGGHGGGNGGGNGGGSGGGSGGGHG 332 GDG G+ G +G +GG G G GGG G GGG+G G G G GHG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 333 GGNGGGNGGGHGGGNGGGN 351 G G GN GG G G + Sbjct: 64 NGGGNGNSGGGSGTGGNLS 82 Score = 45.5 bits (107), Expect = 4e-07 Identities = 37/80 (46%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 349 GGNGGGNGGGNGGGNGGGNGGGNGGGNGGGHGGGSGGHGNGNGGHGNGNGNGNGGGGGGG 408 GG+G G+ G +G NGG G G GGG GSG + N G G+G+G GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG-WSSENNPWGGGSGSGIHWGGGSG 61 Query: 409 GGGGGGGGGGGGGGGGGGGG 428 G GGG G GGG G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 44.3 bits (104), Expect = 8e-07 Identities = 41/113 (36%), Positives = 47/113 (41%), Gaps = 2/113 (1%) Query: 144 GTSGNGASGGGTSGSGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 203 G G G + G S SG GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 204 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS 256 G GG + GG SG G G ++ G T G G S G S Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 44.3 bits (104), Expect = 8e-07 Identities = 38/108 (35%), Positives = 43/108 (39%) Query: 408 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGSGGSGGGGGSGGSGGSGGAGGS 467 GG G G G G GG G G GGG G G S + GGGSG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 468 GGQGNGGGSTGGHGIGGHGNGGGNGNGNGNGGAGSGGANGVGNGSGGG 515 G G G S GG G GG+ + G + GA G+ G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 43.9 bits (103), Expect = 1e-06 Identities = 30/78 (38%), Positives = 38/78 (48%) Query: 233 GGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGHGGHGGGGHGDGGGNGGGNGVGNGGGHGG 292 GG G +G ++ G +GG T G G G G + G G G+G+ GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 293 GHGGGGGGGGHGGGNGGG 310 G+GGG G G G G GG Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 43.9 bits (103), Expect = 1e-06 Identities = 41/114 (35%), Positives = 49/114 (42%), Gaps = 2/114 (1%) Query: 133 NGGKGDGSSGGGTSGNGASGGGTSGSGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSG 192 +GG G G + G S +G GG +G G GG + G G S GG SG G GG SG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 193 GGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS 246 G GG + GG SG G G ++ G T G G S G S Sbjct: 62 HGNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 43.9 bits (103), Expect = 1e-06 Identities = 29/81 (35%), Positives = 35/81 (43%) Query: 243 GGTSGGGTSGGGTSGGGTSGGHGGHGGGGHGDGGGNGGGNGVGNGGGHGGGHGGGGGGGG 302 GG G +G ++ G +GG G G GG G GGG G G GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 303 HGGGNGGGHGGGNGGGNGGGS 323 GG G GGG+G G + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 43.9 bits (103), Expect = 1e-06 Identities = 37/102 (36%), Positives = 41/102 (40%) Query: 423 GGGGGGGGGGGGGGGGGGGGGGGSGGSGGGGGSGGSGGSGGAGGSGGQGNGGGSTGGHGI 482 GG G G G G GG G GGG G S GG G+G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 483 GGHGNGGGNGNGNGNGGAGSGGANGVGNGSGGGGGGGSGGSA 524 G G G +G G+G GG S A V G G+GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 43.5 bits (102), Expect = 2e-06 Identities = 29/79 (36%), Positives = 32/79 (40%) Query: 285 GNGGGHGGGHGGGGGGGGHGGGNGGGHGGGNGGGNGGGSGGGSGGGHGGGNGGGNGGGHG 344 G+G GH G G G G GG + G GGG G G G G GHG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 345 GGNGGGNGGGNGGGNGGGN 363 G G GN GG G G + Sbjct: 64 NGGGNGNSGGGSGTGGNLS 82 Score = 43.5 bits (102), Expect = 2e-06 Identities = 39/110 (35%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 154 GTSGSGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 213 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 214 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 263 G GG + GG SG G G ++ G T G G S G Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 43.5 bits (102), Expect = 2e-06 Identities = 34/80 (42%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 297 GGGGGGHGGGNGGGHGGGNGGGNGGGSGGGSGGGHG-GGNGGGNGGGHGGGNGGGNGGGN 355 GG G GH G G NGG G G GGG+ G G GGG G G G G G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 356 GGGNGGGNGGGNGGGNGGGN 375 G G G GN GG G G + Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 42.0 bits (98), Expect = 4e-06 Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Query: 305 GGNGGGHGGGNGGGNGGGSGGGSGGGHGGGNGGGNGGGHGGGNGGGNGGGNGGGNGGGNG 364 GG+G GH G +G +GG +G G GG + G GGG+G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLG---VGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 365 GGNGGGNGGGNGGGHGGGSGG 385 G+G G G GN GG G G Sbjct: 60 SGHGNGGGNGNSGGGSGTGGN 80 Score = 42.0 bits (98), Expect = 5e-06 Identities = 32/79 (40%), Positives = 35/79 (44%) Query: 204 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 263 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 264 HGGHGGGGHGDGGGNGGGN 282 G G G G G G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 42.0 bits (98), Expect = 5e-06 Identities = 32/78 (41%), Positives = 36/78 (46%) Query: 189 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 248 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 249 GTSGGGTSGGGTSGGHGG 266 G GG + GG SG G Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 42.0 bits (98), Expect = 5e-06 Identities = 32/79 (40%), Positives = 37/79 (46%) Query: 254 GTSGGGTSGGHGGHGGGGHGDGGGNGGGNGVGNGGGHGGGHGGGGGGGGHGGGNGGGHGG 313 G G G + G G +G G G G G +G G + GGG G G GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 314 GNGGGNGGGSGGGSGGGHG 332 GNGGGNG GG GG+ Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 41.6 bits (97), Expect = 7e-06 Identities = 34/80 (42%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 199 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 258 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 259 GTSGGHGGHGGGGHGDGGGN 278 G +GG G+ GGG G GG Sbjct: 63 G-NGGGNGNSGGGSGTGGNL 81 Score = 41.2 bits (96), Expect = 7e-06 Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 327 SGGGHGGGNGGGNGGGHGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGHGGGSGGH 386 SGG G N G + G G GG + G GGG+G G G GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG-GGS 60 Query: 387 GNGNGGHGNGNGNGNGGGGGG 407 G+GNGG +G G+G GG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 41.2 bits (96), Expect = 8e-06 Identities = 31/82 (37%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Query: 276 GGNGGGNGVGNGGGHGGGHGGGGGGGGHGGGNGGGHGGGNGGGNGGGSGGGSGGGHGGGN 335 GG+G G+ G G +GG G G GG + G GGGSG G H GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI---HWGGG 59 Query: 336 GGGNGGGHGGGNGGGNGGGNGG 357 G GG G +GGG+G G Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNL 81 Score = 40.9 bits (95), Expect = 1e-05 Identities = 37/102 (36%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 164 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 223 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 224 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGHG 265 G GG + GG SG G G ++ G T G G Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGG 102 Score = 40.5 bits (94), Expect = 2e-05 Identities = 31/79 (39%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 209 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS-GGHGGH 267 G G G + G S G GG +G G GG + G G S GG SG G GG GH Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 268 GGGGHGDGGGNGGGNGVGN 286 G GG G G G G Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 40.1 bits (93), Expect = 2e-05 Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 317 GGNGGGSGGGSGGGHGGGNGGGNGGGHGGGNGGGNGGGNGGGNGGGNGGGNGGGNGGGNG 376 GG+G G G+ G NGG G G GGG G+G + N G G G+G GGG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSEN-NPWGGGSGSGIHWGGGSG 61 Query: 377 GGHGGGSGGHGNGNGGHGNGN 397 G+GGG+G G G+G GN + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 39.7 bits (92), Expect = 2e-05 Identities = 28/89 (31%), Positives = 36/89 (40%) Query: 440 GGGGGGSGGSGGGGGSGGSGGSGGAGGSGGQGNGGGSTGGHGIGGHGNGGGNGNGNGNGG 499 GG G G +GG G G GG +G G + + G G+G G G G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 500 AGSGGANGVGNGSGGGGGGGSGGSAGGHG 528 GG G GSG GG + + G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 39.3 bits (91), Expect = 3e-05 Identities = 38/112 (33%), Positives = 45/112 (40%), Gaps = 2/112 (1%) Query: 125 GSGGTASGNGGKGDGSSGGGTSGNGASGGGTSGSGTSGGGTSGGGTSGGGTSGGGTSGGG 184 G G + G+ GG +G G GG + GSG S GG SG G GG SG G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 185 TSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS 236 GG + GG SG G G ++ G T G G S G S Sbjct: 64 NGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 39.3 bits (91), Expect = 3e-05 Identities = 38/114 (33%), Positives = 45/114 (39%), Gaps = 2/114 (1%) Query: 118 SGGMNGTGSGGTASGNGGKGDGSSGGGTSGNGASGGGTSGSGTSGGGTSGGGTSGGGTSG 177 SGG + G S +G G +G G G + G G S GG SG G GG SG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 178 GGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS 231 G GG + GG SG G G ++ G T G G S G S Sbjct: 62 HGNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 39.3 bits (91), Expect = 3e-05 Identities = 30/89 (33%), Positives = 39/89 (43%) Query: 438 GGGGGGGGSGGSGGGGGSGGSGGSGGAGGSGGQGNGGGSTGGHGIGGHGNGGGNGNGNGN 497 GG G G +G G G G GG G+G S GG G+G G G+G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 498 GGAGSGGANGVGNGSGGGGGGGSGGSAGG 526 G G G +G G+G+GG + A G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 38.9 bits (90), Expect = 4e-05 Identities = 39/81 (48%), Positives = 47/81 (58%), Gaps = 4/81 (4%) Query: 313 GGNGGGNGGGSGGGSGGGHGGGNGGGNGGGHGGGNGGG---NGGGNGGGNGGGNGGGNGG 369 GG+G G+ G+ SG +GG G G GGG G+G N G G G+G GGG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 370 GNGGGNGGGHGGGSGGHGNGN 390 GNGGGNG GGGSG GN + Sbjct: 63 GNGGGNGNS-GGGSGTGGNLS 82 Score = 38.9 bits (90), Expect = 4e-05 Identities = 34/80 (42%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Query: 224 GTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGH---GGHGGGGHGDGGGNGG 280 G G G + G S G GG +G G GG + G G S + GG G G GGG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 281 GNGVGNGGGHGGGHGGGGGG 300 GNG G G GGG G GG Sbjct: 63 GNG-GGNGNSGGGSGTGGNL 81 Score = 35.1 bits (80), Expect = 7e-04 Identities = 32/112 (28%), Positives = 43/112 (38%) Query: 80 AAGSGAGNTTGGGSPGNGGSGGSGAVGPAGVSGSTGSTSGGMNGTGSGGTASGNGGKGDG 139 + G G G+ TG S +GG +G G + S N G G + + G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 140 SSGGGTSGNGASGGGTSGSGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS 191 GG +GN G GT G+ ++ G T G G S G S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 34.7 bits (79), Expect = 0.001 Identities = 37/114 (32%), Positives = 42/114 (36%), Gaps = 2/114 (1%) Query: 113 STGSTSGGMNGTGSGGTASGNGGKGDGSSGGGTSGNGASGGGTSGSGTSGGGTSGGGTSG 172 S G G G S G G G GG + G+G S G SG G GG SG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 173 GGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTS 226 G GG + GG SG G G ++ G T G G S G S Sbjct: 62 HGNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 33.5 bits (76), Expect = 0.002 Identities = 26/71 (36%), Positives = 32/71 (45%) Query: 458 SGGSGGAGGSGGQGNGGGSTGGHGIGGHGNGGGNGNGNGNGGAGSGGANGVGNGSGGGGG 517 SGG G +G G GG G G G +G+G + GG +G G GGG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 518 GGSGGSAGGHG 528 G+GG G G Sbjct: 62 HGNGGGNGNSG 72 Score = 32.8 bits (74), Expect = 0.004 Identities = 30/103 (29%), Positives = 37/103 (35%) Query: 79 GAAGSGAGNTTGGGSPGNGGSGGSGAVGPAGVSGSTGSTSGGMNGTGSGGTASGNGGKGD 138 A S +GN GG + G G S G + + G SG G G GG G+ Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 139 GSSGGGTSGNGASGGGTSGSGTSGGGTSGGGTSGGGTSGGGTS 181 G GT GN ++ G T G G S G S Sbjct: 71 SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 32.4 bits (73), Expect = 0.004 Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Query: 446 SGGSGGGGGSGGSGGSGGA-GGSGGQGNGGGSTGGHGIGGHGNGGGNGNGNGNGGAGSGG 504 SGG G G +G SG GG G G GGG++ G G N G G+G+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 505 ANGVGNGSGGGGGGGSGGSAGGHG 528 GG G G G GG+ Sbjct: 62 ----HGNGGGNGNSGGGSGTGGNL 81
>PF06872#EspG protein Length = 398 Score = 31.6 bits (71), Expect = 0.007 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 22/121 (18%) Query: 145 DGAALDTALAEAGLCAALIRTPDE------WAAHDQARALASLPLFEIERIGDAPVEAIG 198 DG++L ++ + L A I TP+ A++Q R L SLP I R P + Sbjct: 101 DGSSLRISVTNSELIEAEIHTPNNEKFLVLLEANEQNRLLQSLP---INR--HMPYIQVH 155 Query: 199 HGEPDQPLAGV----RVLDLTRIIAGPVAGRTLASHGAQTLLVNGPHLPNIASLVIDNGR 254 H P + L + ++L T ++ TL H QT ++G +++ +D R Sbjct: 156 HTLPQEELTDLLSMHKLLSFTSKLSA-----TLIPHNNQTDPLSGL--TPFSTVFMDTSR 208 Query: 255 G 255 G Sbjct: 209 G 209
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 140 bits (355), Expect = 7e-39 Identities = 92/408 (22%), Positives = 175/408 (42%), Gaps = 15/408 (3%) Query: 28 VMLWLVATGFFMQTLDATIVNTALPSMAVSLGESPLRMQSVVIAYSLTMAVMIPVSGWLA 87 +++WL FF L+ ++N +LP +A + P V A+ LT ++ V G L+ Sbjct: 15 ILIWLCILSFF-SVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 88 DTFGTRRVFFSAILVFSLGSLLCANAHTLQQLVVF-RVVQGVGGAMLLPVGRLAVLRTFP 146 D G +R+ I++ GS++ H+ L++ R +QG G A + + V R P Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 147 AERYLSALSFVAIPGLIGPLIGPTLGGWLVKIASWHWIFLINVPVGVAGCIATFYSMPDS 206 E A + +G +GP +GG + HW +L+ +P+ + + Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAH--YIHWSYLLLIPMITIITVPFLMKLLKK 191 Query: 207 RNPAVGRFDLKGYLLLTIGMVAISLSLDGLADLGMQHAAVLVLLILSLACFVAYGLYAVR 266 G FD+KG +L+++G+V L + L++ +LS FV + + Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTT------SYSISFLIVSVLSFLIFVKHIR---K 242 Query: 267 APLPIFSLELFKIHTFSVGLLGNLFARIGSGAMPYLIPLLLQVSLGYSAFEAG-LMMLPV 325 P L K F +G+L ++P +++ S E G +++ P Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 326 AAAGMFSKRIITQLITRHGYRKVLLVNTIMVGVMMASFALMRDTVPVWVKVVHLALFGGF 385 + + I L+ R G VL + + V + + + +T ++ ++ + + GG Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGL 362 Query: 386 NSMQFTAMNTLTLKDLGTGGASSGNSLFSLVQMLSMSLGVTVAGALLA 433 + + T ++T+ L A +G SL + LS G+ + G LL+ Sbjct: 363 SFTK-TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 28.5 bits (63), Expect = 0.020 Identities = 12/46 (26%), Positives = 22/46 (47%) Query: 175 RTHIRLSQEKLAAMLSLTRQTTNQLLKALQADGVVRLHVGEIELVD 220 R+ +R +L A L + ++ K L + G + +H I L+D Sbjct: 150 RSKLREELAELTAELKIYSVIQAEINKHLSSSGTINIHDKSINLMD 195
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.9 bits (101), Expect = 2e-06 Identities = 48/210 (22%), Positives = 78/210 (37%), Gaps = 8/210 (3%) Query: 31 VLLAALAIVLDGFDGQLIGFAIPVLIREWGITRGA---FAPAVAAGLIGMGIGSACAGIV 87 +++ + LD LI +P L+R+ + + +A + + G + Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 88 ADRFGRRQAVIGSVFLFGVATCAIGFAPDVATIALLRFCAGLGIGGALPTATTMTAEYTP 147 +DRFGRR ++ S+ V + AP + + + R AG+ G A A+ T Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITD 125 Query: 148 ARRRTMMVTATIVCVPLGGMLAGLFAHEVLPRYGWRGLFFAGGALPL---VLGFVLMRAL 204 R C GM+AG ++ + FFA AL + G L+ Sbjct: 126 GDERARHFGFMSACFGF-GMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 205 PESPRYLARRPARWPELGALLARMQRPVAP 234 + R RR A P AR VA Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAA 214
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 37.6 bits (87), Expect = 7e-05 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 5/155 (3%) Query: 31 LLALATAGFITILTEALPAGLLPLMSVDLRVTEALIGQLVTVYALGSIVAAIPLVAATRA 90 L+ L F ++L E + LP ++ D A + T + L + + Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 91 MRRRRLLLAALAGFVVSNALTAAS-PYYALTLAARFVAGMSAGLLWALLAGYASRMVDAS 149 + +RLLL + + + +++L + ARF+ G A AL+ +R + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 150 LRGRAIAVAMLGAPVAMSIGI-PA-GTALGAMFGW 182 RG+A ++G+ VAM G+ PA G + W Sbjct: 136 NRGKAF--GLIGSIVAMGEGVGPAIGGMIAHYIHW 168
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.4 bits (66), Expect = 0.022 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 65 REDTLFRLASVSKPIVTAAAMRLVAAGRIELDEPVAHW----LPAFRPTLRDGTPTDITL 120 R D F + S K ++ A + V AG +L+ + H+ L + P +T+ Sbjct: 57 RADERFPMMSTFKVVLCGAVLARVDAGDEQLERKI-HYRQQDLVDYSPVSEKHLADGMTV 115 Query: 121 RHLLSHT 127 L + Sbjct: 116 GELCAAA 122
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.015 Identities = 14/35 (40%), Positives = 17/35 (48%) Query: 32 VVFVGPSGCGKSTLMRMIAGLEDISSGELLIDGAK 66 VV G G GKSTL+ + GL+ S I K Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.3 bits (63), Expect = 0.044 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 5/52 (9%) Query: 7 EGRRAPAAFDLVRR---ALPGALAWLIALLLFFPIFWMAITAFKTEQQAYAS 55 E PA +L+ P +A+ I L + + E A A+ Sbjct: 38 ENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLG--QVEIVATAN 87
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 34.3 bits (78), Expect = 0.001 Identities = 98/445 (22%), Positives = 165/445 (37%), Gaps = 77/445 (17%) Query: 6 LDAAARCFAGAALATAACAASA------GTLTIATLNNPDMIELKKLSPAFEKANPDIKL 59 + AR A +AL T +ASA G L I + L ++ FEK D + Sbjct: 3 IKTGARILALSALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEK---DTGI 59 Query: 60 NWVILEENVLRQRATTDITTGSGQFDVMAIGTYETPQWGKRGWLAPMTGLPADYDLNDIV 119 + + L ++ TG G D++ + + G LA +T P + + Sbjct: 60 KVTVEHPDKLEEKFPQVAATGDGP-DIIFWAHDRFGGYAQSGLLAEIT--PDKAFQDKLY 116 Query: 120 KTARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMPDQP-TYDQIAEFADKLTDKA 178 D++ YNG+L A P VE+ Y KDL +P+ P T+++I +L KA Sbjct: 117 PFTWDAVRYNGKLIAYPIAVEALSLIYNKDL-------LPNPPKTWEEIPALDKEL--KA 167 Query: 179 KGTYGICLRGKAGWGENMAYVSTVVNTFGGRWFD-ENW-----NAQLTSPEWKKAIGFYV 232 KG + + + + ++ GG F EN + + + K + F V Sbjct: 168 KGKSALMFNLQEPY-----FTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLV 222 Query: 233 NLLKK-----DGPPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGF 287 +L+K D + FN+ G+ AM I+ A N S+V G Sbjct: 223 DLIKNKHMNADTDYSIAEAAFNK-------GETAMTINGPWAWS---NIDTSKV--NYGV 270 Query: 288 AAAPVAATPKGSHWLWAWALAVPKTSKQQDAARKFIA-WATSKQYIEMAGKDEGWASVPP 346 P ++ + + S ++ A++F+ + + + +E KD+ Sbjct: 271 TVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK------- 323 Query: 347 GTRTSTYQRPEYKAAAPFSDFVLKAIETADPNDPSLKKV---PYTGVQYVGIPEFQSFGT 403 P LK+ E DP + G IP+ +F Sbjct: 324 ----------------PLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWY 367 Query: 404 VVGQAIAGAVAGQTTVDQALAAGQA 428 V A+ A +G+ TVD+AL Q Sbjct: 368 AVRTAVINAASGRQTVDEALKDAQT 392
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 130 bits (327), Expect = 8e-39 Identities = 84/255 (32%), Positives = 124/255 (48%), Gaps = 7/255 (2%) Query: 3 LEQKVAILTGAASGIGEAVAQRYLDEGARCVLVDVKPASGSLARLIEASPGR-AVAVTAD 61 +E K+A +TGAA GIGEAVA+ +GA VD P + R A A AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 62 VTRRDDIERIVATAVERFGGVDILFNNAALFDMRPLLDESWDVFDRLFSVNVKGLFFLMQ 121 V I+ I A G +DIL N A + + S + ++ FSVN G+F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 122 AVAQRMVEQGRGGKIVNMSSQAGRRGEALVSHYCATKAAVISYTQSAALALAPHRINVNG 181 +V++ M+++ R G IV + S ++ Y ++KAA + +T+ L LA + I N Sbjct: 126 SVSKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 182 IAPGVVDTPMWEQVDALFARYEQRPPG--EKKRLVGEAVPLGRMGAPGDLTGAALFLASA 239 ++PG +T M + A EQ G E + +PL ++ P D+ A LFL S Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKT---GIPLKKLAKPSDIADAVLFLVSG 241 Query: 240 DADYITAQTLNVDGG 254 A +IT L VDGG Sbjct: 242 QAGHITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 103 bits (258), Expect = 6e-29 Identities = 70/247 (28%), Positives = 108/247 (43%), Gaps = 14/247 (5%) Query: 3 ALVTGGSGALGQAICTALAQAGHEVWVHANRNLAQAEAVAQQIVAAGGTAHAIAFDVTDG 62 A +TG + +G+A+ LA G + + N + E V + A A A DV D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 63 DATLAALAPFVDD-APVQILVNNAGIHDDAPMAGMSRRQWHSVIDVTLNGFFNVTQPLLL 121 A A + P+ ILVN AG+ + +S +W + V G FN ++ + Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 122 PMIRTRRGRIINIASVAGVTGNRGQVNYAAAKAGLIGATKSLSLELASRGITVNAVAPGI 181 M+ R G I+ + S YA++KA + TK L LELA I N V+PG Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 182 IESPMAD------------LAFPAERIKQLVPAQRAGRPDEVAAMVAYLVSDAAAYVTGQ 229 E+ M + E K +P ++ +P ++A V +LVS A ++T Sbjct: 190 TETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMH 249 Query: 230 VLSVNGG 236 L V+GG Sbjct: 250 NLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 126 bits (318), Expect = 1e-37 Identities = 79/249 (31%), Positives = 122/249 (48%), Gaps = 10/249 (4%) Query: 4 RIAVVTGGMGGLGEAISIRLNDAGYQVVVTYSPNNTGADRWLTEMHSAGREFHAYPVDVA 63 +IA +TG G+GEA++ L G + N ++ ++ + + R A+P DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIA-AVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 64 DYDSCQQCIEKIVREVGPVDILVNNAGITRDMTLRKLDKVNWDAVIRTNLDSVFNMTKPV 123 D + + +I RE+GP+DILVN AG+ R + L W+A N VFN ++ V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 124 CDGMVERGWGRIVNIASVNGSKGSIGQTNYAAAKAGMHGFTKSLALETARKGVTVNTVSP 183 M++R G IV + S YA++KA FTK L LE A + N VSP Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 184 GYLATKMVTAI--PQDILDTKI---LPQ----IPAGRLGKPEEVAGLVAYLCSEEAGFVT 234 G T M ++ ++ + I L IP +L KP ++A V +L S +AG +T Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 235 GSNIAINGG 243 N+ ++GG Sbjct: 248 MHNLCVDGG 256
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.018 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 6/106 (5%) Query: 171 TRDEQDAFAALSQNKAEAAQKAGRFNDEIVPVSIPQGKGEPLQFATDEFVRHGVTAESLA 230 DE A A + + K E + F +I G F + + G+ ++L Sbjct: 637 NGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAI-VELGTATGFDFELIDQAGLGHDALT 695 Query: 231 GLKPAFAKE-----GTVTAANASGLNDGAAAVLVMSAQKAAALGLT 271 + ++ + +GL D A L + +KA ALG++ Sbjct: 696 QARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVS 741
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 28.6 bits (64), Expect = 0.015 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 9/94 (9%) Query: 103 QPLRAIFRQSVIGNLMNPKVTLFFVVFL-----PQFVDPHGAQGVTLQMFE---LGALFM 154 Q +R+ +Q++I + V + V L P+ V+ L + +G Sbjct: 163 QQMRSRIQQAMIYPCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDA 222 Query: 155 LQTAAIFSLFGVGAGAIG-TWLKRRPKAGVWLDR 187 ++T + L + AG + + R+ K V R Sbjct: 223 VRTFGPWMLLALLAGFMAFRVMLRQEKRRVSFHR 256
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 31.8 bits (72), Expect = 0.004 Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 1/102 (0%) Query: 454 PDDPDLRYDYAMAAEKTGHYATMEKQLRELIRTQPDNPQAYNALGYSLADRNQRLPEASK 513 D + Y A ++G Y K + L + + + LG Q A Sbjct: 33 SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQ-YDLAIH 91 Query: 514 LIDKALSLAPNDAYIMDSLGWVKYRMGDTTGAAKVLQRAFEL 555 + + + G+ A L A EL Sbjct: 92 SYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 31.1 bits (70), Expect = 0.007 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 5/112 (4%) Query: 478 KQLRELIRTQPDNPQAYNALGYSLADRNQRLPEASKLIDKALSLAPNDAYIMDSLGWVKY 537 L E+ D + +L ++ ++ + +A K+ L D+ LG + Sbjct: 26 AMLNEIS---SDTLEQLYSLAFN-QYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQ 81 Query: 538 RMGDTTGAAKVLQRAFELQPNAEIGA-HLGEVLWKSGAQDDARIAWRAAQKL 588 MG A + H E L + G +A AQ+L Sbjct: 82 AMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 595 bits (1537), Expect = 0.0 Identities = 218/578 (37%), Positives = 329/578 (56%), Gaps = 10/578 (1%) Query: 4 SFTLHGIPVSRGIAIGRAYLIAPAALDVAHYLIEANQIDAEVERFRTAREVVHRELNALR 63 + GI S G+AI +A++ +D+ I + E+E+ A E EL A++ Sbjct: 2 HHKITGIAASSGVAIAKAFIHLEPNVDIEKTSIT--DVSTEIEKLTAALEKSKEELRAIK 59 Query: 64 ADLTDDTPSEVGAFIDVHTMILSDAMLVQETIDLVRTRRYNVEWALTEQLELLTRHFDDI 123 ++ H ++L D LV + + N E+AL E ++ F+ + Sbjct: 60 DQTEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESM 119 Query: 124 EDEYLRERKADIEQVVERVLKALAGAPSASQALDRAAARGQNEMIVVAHDIAPADMMQFK 183 ++EY++ER ADI V +RVL L G + S A E +++A D+ P+D Q Sbjct: 120 DNEYMKERAADIRDVSKRVLGHLIGVETGSLATI------AEETVIIAEDLTPSDTAQLN 173 Query: 184 SQSFQAFVTDLGGRTSHTAIVARSLGIPAAVGVQHASALIRQDDLIIVDGDQGIVIVDPA 243 Q + F TD+GGRTSH+AI++RSL IPA VG + + I+ D++IVDG +GIVIV+P Sbjct: 174 KQFVKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPT 233 Query: 244 PIVLEEYSYRQSEKLLEQRKLQRLKFSPTQTLCGTKIELYANIELPDDAKAAVEAGAVGV 303 ++ Y +++ ++++ +L P+ T G +EL ANI P D + G G+ Sbjct: 234 EEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGI 293 Query: 304 GLFRSEFLFMHQKEMPEEEEQFAAYKRAVEWMKGMPVTIRTIDVGADKPLEALDEGYETA 363 GL+R+EFL+M + ++P EEEQF AYK V+ M G PV IRT+D+G DK L L E Sbjct: 294 GLYRTEFLYMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKEL- 352 Query: 364 PNPALGLRAIRWSLSEPQMFLTQLRAILRASAFGQVKILIPMLAHAQEIDQTLDLIREAK 423 NP LG RAIR L + +F TQLRA+LRAS +G +K++ PM+A +E+ Q +++E K Sbjct: 353 -NPFLGFRAIRLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEK 411 Query: 424 RQLDDAGLAYDPNVRIGAMIEIPAAAIALPLFLKRFDFLSIGTNDLIQYTLAIDRADNAV 483 +L G+ ++ +G M+EIP+ A+A LF K DF SIGTNDLIQYT+A DR + V Sbjct: 412 DKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERV 471 Query: 484 AHLYDPLHPAVLHLISYTLREAKRAGVSVSVCGEMAGDPTLTRLLLGMGLTEFSMHPSQL 543 ++LY P HPA+L L+ ++ A G V +CGEMAGD LLLG+GL EFSM + + Sbjct: 472 SYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSI 531 Query: 544 LVVKQEILRAHLKALEKPTADVLAAFEPEEVQAALKRL 581 L + ++L+ + L+ L EEV+ +K+ Sbjct: 532 LPARSQLLKLSKEELKPFAQKALMLDTAEEVEQLVKKT 569
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 453 bits (1168), Expect = e-159 Identities = 160/483 (33%), Positives = 240/483 (49%), Gaps = 47/483 (9%) Query: 4 RLQVIYIEDDALVRRASVQSLQLAGFDVVGFESAEAADKAIVAETAGVIVSDIRLPGASG 63 ++ +DDA +R Q+L AG+DV +A + I A ++V+D+ +P + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 64 LDLLAQCRERVPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFAAERLIETVRRALERR 123 DLL + ++ PD+PV++++ A++A GAYD++ KPF LI + RAL Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 124 ELVLENHALRRELAGQNIVAPRIIGRSPAIEQVRKLIANVAPTDASVLINGDTGAGKELI 183 + +L + ++GRS A++++ +++A + TD +++I G++G GKEL+ Sbjct: 123 K------RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV 176 Query: 184 ARSLHELSPRRDKPFIAVNCGALPEPMFESEMFGYEPGAFTGAAKRRVGKLEYASGGTLF 243 AR+LH+ RR+ PF+A+N A+P + ESE+FG+E GAFTGA R G+ E A GGTLF Sbjct: 177 ARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLF 236 Query: 244 LDEIESMPLALQVKLLRVLQDGVLERLGSNQPIRVNCRVVAAAKGDMSELVAAGTFRRDL 303 LDEI MP+ Q +LLRVLQ G +G PIR + R+VAA D+ + + G FR DL Sbjct: 237 LDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDL 296 Query: 304 LYRLNVVTIALPPLAERREDIVPLFEHFMLDAAVRYGRPAPVLTDRQRASLMQRDWPGNV 363 YRLNVV + LPPL +R EDI L HF + A + G + WPGNV Sbjct: 297 YYRLNVVPLRLPPLRDRAEDIPDLVRHF-VQQAEKEGLDVKRFDQEALELMKAHPWPGNV 355 Query: 364 RELRNAADRFVL----------------------------------------GVADMPQD 383 REL N R +M Q Sbjct: 356 RELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQY 415 Query: 384 AGASGDDAESDQTLKERIEQFERAVIAQALNQTGGAVAATADRLHVGKATLYEKMKRYGL 443 + GD + + E +I AL T G AD L + + TL +K++ G+ Sbjct: 416 FASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475 Query: 444 SAK 446 S Sbjct: 476 SVY 478
>PF03309#Bvg accessory factor Length = 271 Score = 168 bits (426), Expect = 2e-53 Identities = 58/278 (20%), Positives = 95/278 (34%), Gaps = 40/278 (14%) Query: 6 LLIDAGNSRIKWALADA---RRTLVDTGAFGHTRDGGADPDWSALPRPHGAWISNVAGAD 62 L ID N+ L +V + AD I + G D Sbjct: 3 LAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADE--------LALTIDGLIGDD 54 Query: 63 ---------------VAARLDALLDACWPGLPRTTIRSQPAQCGVTNGYTTPDQLGSDRW 107 V + +L+ WP +P I + G+ P ++G+DR Sbjct: 55 AERLTGASGLSTVPSVLHEVRVMLEQYWPNVPHVLIEPG-VRTGIPLLVDNPKEVGADRI 113 Query: 108 AGLIGARAAFPGEHLLIATFGTATTLEALRADGRFTGGLIAPGWALMMRALGTHTAQLPT 167 + A + +++ FG++ ++ + A G F GG IAPG + A +A L Sbjct: 114 VNCLAAYHKYGTAAIVV-DFGSSICVDVVSAKGEFLGGAIAPGVQVSSDAAAARSAALRR 172 Query: 168 LTTDIASGLLAGAQAEPFQVDTPRSLSAGCLYAQAGLIE----RAWRDLADAWQAPVRLV 223 + ++ +T + AG ++ AGL++ R D+ A V +V Sbjct: 173 VELTRPRSVIGK--------NTVECMQAGAVFGFAGLVDGLVNRIRDDVDGFSGADVAVV 224 Query: 224 LAGGAADDVARALTLPHTRHDALILSGLALIAAEGAAQ 261 G A V L L L GL L+ A Sbjct: 225 ATGHTAPLVLPDLRTVEHYDRHLTLDGLRLVFERNRAN 262
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.003 Identities = 79/356 (22%), Positives = 118/356 (33%), Gaps = 42/356 (11%) Query: 80 GIAADRFGDRRVLLTGLVATAAMLALMVITIVPSAHAVPPLM--RVVAAMC-CVGLLGGS 136 G +DRFG R VLL L A A+M A + L R+VA + G + G+ Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMAT-----APFLWVLYIGRIVAGITGATGAVAGA 118 Query: 137 V--NGSSGRAVMRWFGERERGLAMSIRQTAVPLGGGVGAALLPSLASHAGFAAVYGALML 194 + + G R FG A P+ GG+ P AA L Sbjct: 119 YIADITDGDERARHFG--FMSACFGFGMVAGPVLGGLMGGFSPHAPFF--AAAALNGLNF 174 Query: 195 LCAGSAALTWRWLHEPPDAPAAAHGPTAHRPATQQPPAAAAAAR-SPLASGRVWRIVLGI 253 L L E RP ++ A+ R + + + + Sbjct: 175 L------TGCFLLPESH--------KGERRPLRREALNPLASFRWARGMTVVAALMAVFF 220 Query: 254 GALCAPQFAVLTFATVFLHDFG-RLGLAGISAAMVALQVGAMVMRVWSGRHTDRHGNRRA 312 Q + F GIS A + + ++ + +G R G RRA Sbjct: 221 IMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGI-LHSLAQAMITGPVAARLGERRA 279 Query: 313 YLRGSVCVAAGSFALLAAATAGSPHVPLAAIVAILVFAGICVSAWHGVAYTELATLAGAN 372 + G + G + LLA AT G P I+ +L GI + A + L+ Sbjct: 280 LMLGMIADGTG-YILLAFATRGWMAFP---IMVLLASGGIGMPALQAM----LSRQVDEE 331 Query: 373 HAGTALGMANTIVYLGLFATPLAIPPLLAVS--SWS-VVWLAAALIAGATYPLFAR 425 G G + L PL + A S +W+ W+A A + P R Sbjct: 332 RQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRR 387
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 29.7 bits (66), Expect = 0.001 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Query: 1 MRRVALVVVLCAATFVAACSDDAPHDAHTADGSPPAGAS 39 M+ V L+++L A +AACS++A + D P AS Sbjct: 9 MKNVKLLLMLGTAALLAACSNEADSLTTSID--APVTAS 45
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 86.4 bits (214), Expect = 3e-21 Identities = 81/353 (22%), Positives = 129/353 (36%), Gaps = 46/353 (13%) Query: 22 VAAAAPVHAQSSVSLYGQVDEWIGATKFPGGDRAWNV-----SGGGMSTSYWGLHGAEDL 76 AA PV A + V+LYG + + ++ + A +G S G G EDL Sbjct: 9 TLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDL 68 Query: 77 GNGYKAIFTLESFFRAQNGQFGRFQGDTFFARNAYVGVSSPYGTVTAGRLTTHLFLSTIL 136 GNG KAI+ +E G + R +++G+ +G + GRL Sbjct: 69 GNGLKAIWQVEQKASIAGTDSG------WGNRQSFIGLKGGFGKLRVGRL---------- 112 Query: 137 FNPFYDSYTFSPMVYHVFLGLGTFPTYPSDQGAVGDSGWNNALSYTSPSFGGLNFGAMYA 196 + D+ +P ++ A ++ + Y SP F GL+ YA Sbjct: 113 NSVLKDTGDINPWD-------SKSDYLGVNKIAEPEARLISV-RYDSPEFAGLSGSVQYA 164 Query: 197 LGNTAGDNRSKKWSAQFNYANGPFAATAVYQYVNFNNGPQDLSSLVTGMKSQGIGLVGAT 256 L + AG + S+ + A FNY NG F Y + ++ V K Q LV Sbjct: 165 LNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQEN----VNIEKYQIHRLVS-G 219 Query: 257 YDLKYVKLFGQYMYTKNDQVAGSWHVNTAQGGVSVPLG--VGNAMASYAY------SRDG 308 YD + + ++ ++ + + +Q V+ L GN +Y S D Sbjct: 220 YDNDALYAS-VAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDA 278 Query: 309 GGLDQTRQTWAVGYDYPLSKRTDVYAAYM---NDHISGLSSGNTFGAGIRAKF 358 + VG +Y SKRT + G G+R KF Sbjct: 279 TNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVGLRHKF 331
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 29.6 bits (66), Expect = 0.014 Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 5/96 (5%) Query: 2 GTTIRDVARAAEVSIGTVSRALKNQPGLSEATRARIVE-----IAQRLGYDPAQLRPRIR 56 T++ ++A+AA V+ G + K++ L + P +R Sbjct: 31 STSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLR 90 Query: 57 RLTFLLHRQHNRFPASPFFSHVLHGVEDACRERGIV 92 + + ++ + E +V Sbjct: 91 EILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 370 bits (952), Expect = e-129 Identities = 164/378 (43%), Positives = 221/378 (58%), Gaps = 21/378 (5%) Query: 19 IAAALVLAACAF---GAPGAHAERLKDLAQIQGVRDNPLIGYGLVVGLDGTGDQTMQTPF 75 IAAALV +A F A R+KD+A +Q RDN LIGYGLVVGL GTGD +PF Sbjct: 7 IAAALVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPF 66 Query: 76 TTQTLANMLANLGISINNGSANGGPSSLSNMQLKNVAAVMVTATLPPFARPGEALDVTVS 135 T Q++ ML NLGI+ G +N KN+AAVMVTA LPPFA PG +DVTVS Sbjct: 67 TEQSMRAMLQNLGITTQGGQSN----------AKNIAAVMVTANLPPFASPGSRVDVTVS 116 Query: 136 SLGNAKSLRGGTLLLTPLKGADGQVYALAQGNMAVGGAGASANGSRVQVNQLAAGRIVGG 195 SLG+A SLRGG L++T L GADGQ+YA+AQG + V G A + + + + R+ G Sbjct: 117 SLGDATSLRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNG 176 Query: 196 AIVERAVPNAIAQMNGVLQLQLNDMDYGTAQRIVSAVNS----SFGPGTATALDGRTIQL 251 AI+ER +P+ L LQL + D+ TA R+ VN+ +G A D + I + Sbjct: 177 AIIERELPSKFKDSV-NLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAV 235 Query: 252 AAPADSAQQVAFMARLQNLDVSPDKAAAKVILNARTGSIVMNQMVTLQSCAVAHGNLSVV 311 P + MA ++NL V D AKV++N RTG+IV+ V + AV++G L+V Sbjct: 236 QKPRVA-DLTRLMAEIENLTVETD-TPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQ 293 Query: 312 VNTQPVVSQPGPFSNGQTVVAQQSQIQLKQDNGALKMVTAGANLADVVKALNSLGATPAD 371 V P V QP PFS GQT V Q+ I Q+ + + G +L +V LNS+G Sbjct: 294 VTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSKVA-IVEGPDLRTLVAGLNSIGLKADG 352 Query: 372 LMSILQAMKAAGALRADL 389 +++ILQ +K+AGAL+A+L Sbjct: 353 IIAILQGIKSAGALQAEL 370
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 215 bits (550), Expect = 5e-73 Identities = 129/222 (58%), Positives = 163/222 (73%), Gaps = 7/222 (3%) Query: 14 AVCALAVAALAGCAQIPRDPIIQQPMTAQPPMPMSMQAPGSIY---NPGYAG-RPLFEDQ 69 A+ +L V +L GCA IP P++Q +AQP + A GSI+ P G +PLFED+ Sbjct: 10 AISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDR 69 Query: 70 RPRNIGDILTIMIAENINATKSSGANTNRQGNTDFSVPTAG-FLGGLF--AKANMSAAGA 126 RPRNIGD LTI++ EN++A+KSS AN +R G T+F T +L GLF A+A++ A+G Sbjct: 70 RPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGG 129 Query: 127 NKFAATGGASAANTFNGTITVTVTNVLPNGNLVVSGEKQMLINQGNEFVRFSGVVNPNTI 186 N F GGA+A+NTF+GT+TVTV VL NGNL V GEKQ+ INQG EF+RFSGVVNP TI Sbjct: 130 NTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTI 189 Query: 187 SGANSVYSTQVADAKIEYSSKGYINEAETMGWLQRFFLNIAP 228 SG+N+V STQVADA+IEY GYINEA+ MGWLQRFFLN++P Sbjct: 190 SGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSP 231
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 43.8 bits (103), Expect = 4e-07 Identities = 9/42 (21%), Positives = 23/42 (54%) Query: 220 EASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261 S VN+ +E N+ + Q+ Y N++ + T++ + + ++ Sbjct: 505 SISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 39.6 bits (92), Expect = 9e-06 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 14/80 (17%) Query: 4 SLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQTELP 63 + A +G+NA QA ++ SNN+++ + G+ + + + L Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIM--------------AQANSTLG 48 Query: 64 SGLQLGTGVQQVATERLYTQ 83 +G +G GV +R Y Sbjct: 49 AGGWVGNGVYVSGVQREYDA 68
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.0 bits (62), Expect = 0.035 Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 4 LIYTAMTGASQSLDQQAIVANNLANASTTGFRAQ 37 LI AM+G + + +NN+++ + G+ Q Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQ 36
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 36.5 bits (84), Expect = 2e-04 Identities = 18/58 (31%), Positives = 25/58 (43%) Query: 356 ISAPGSTNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 413 SA L S V+L + NL Q+ Y ANAQ ++T + LIN+ Sbjct: 488 SSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 33.0 bits (75), Expect = 0.002 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 11/78 (14%) Query: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTA----QFSDMYANSIATSVNTQIGIGTAL 61 +SGL A AL+ NNI++ N G+ T S + A +G G + Sbjct: 7 AMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGG-------WVGNGVYV 59 Query: 62 SSVQQQFGQGTINTTNSS 79 S VQ+++ N ++ Sbjct: 60 SGVQREYDAFITNQLRAA 77
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 26.8 bits (59), Expect = 0.032 Identities = 10/38 (26%), Positives = 17/38 (44%) Query: 102 NVDPVQEMVNMISASRSYQANVETLNTAKTLMLKTLTI 139 V+ +E N+ + Y AN + L TA + + I Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.0 bits (218), Expect = 2e-22 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 2/114 (1%) Query: 5 ILLVDDHAIVRQGVRHLLIDRGVAREVTEAETGSDAVAAVDRQTFDVILLDISLPDTNGI 64 IL+ DD A +R + L G +V + + D+++ D+ +PD N Sbjct: 6 ILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 65 ELLKRIKRKLPGTPVLMFSMYREDQYAVRALKAGASGYLSKTVNAAQMIGAIQQ 118 +LL RIK+ P PVL+ S A++A + GA YL K + ++IG I + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 60.5 bits (147), Expect = 3e-14 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 9 AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67 A ++Y G P V K + + A + G+ + + +L +D I Sbjct: 268 AIGILYKR-GETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYI 326 Query: 68 PPQLYQAVADLLAWLYSLD 86 P + +A A++L WL + Sbjct: 327 PAEQIEATAEVLRWLERQN 345
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 65.1 bits (158), Expect = 3e-17 Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 9/112 (8%) Query: 8 ANVSGIGSVLQQMQAMAAQAGGGVASPTAALAGSGAATAGTFASAMKASLDKISGDQQHA 67 + + GI V+ Q+QA A A + P + +FA + A+LD+IS Q A Sbjct: 1 SAIQGIEGVISQLQATAMSARAQESLPQPTI---------SFAGQLHAALDRISDTQTAA 51 Query: 68 LGEAQAFEVGAANVSLNDVMVDMQKANIGFQFGLQVRNKLVSAYNDIMQMSV 119 +A+ F +G V+LNDVM DMQKA++ Q G+QVRNKLV+AY ++M M V Sbjct: 52 RTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 477 bits (1229), Expect = e-165 Identities = 250/550 (45%), Positives = 364/550 (66%), Gaps = 23/550 (4%) Query: 52 ISRMKGNPKLPFVIAVAFAIAAITALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVP 111 ++R++ NP++P ++A + A+A + A+VLW++ PDYR L+SNLSD+DGGAI+A L Q N+P Sbjct: 16 LNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIP 75 Query: 112 YKFADAGGAILVPSNQVHETRLKLAALGLPKGGSVGFELMDNQKFGISQFAEQVNYQRAL 171 Y+FA+ GAI VP+++VHE RL+LA GLPKGG+VGFEL+D +KFGISQF+EQVNYQRAL Sbjct: 76 YRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRAL 135 Query: 172 EGELQRTIESINAVRGARVHLAIPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITR 231 EGEL RTIE++ V+ ARVHLA+PKPS+FVR++++PSASV V L PGR LDEGQ+ A+ Sbjct: 136 EGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVH 195 Query: 232 MVSSGVPDMPAKNVTIVDQDGNLLTQTASASG-LDASQLKYVQQVERNTQKRIDSILAPI 290 +VSS V +P NVT+VDQ G+LLTQ+ ++ L+ +QLK+ VE Q+RI++IL+PI Sbjct: 196 LVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPI 255 Query: 291 FGTGNARSQVSADIDFSKLEQTSESYSPNGTPQQAAIRSQQTSSATELAQGGASGVPGAL 350 G GN +QV+A +DF+ EQT E YSPNG +A +RS+Q + + ++ G GVPGAL Sbjct: 256 VGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGAL 315 Query: 351 SNTPPQPASAPIVA-----GNGQN---------GAQSTPVSDRKDQTTNYELDKTIRHVE 396 SN P P API N QN + P S ++++T+NYE+D+TIRH + Sbjct: 316 SNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTK 375 Query: 397 QPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKLAQVEQLVKDAMGYDEKRGDSVNV 456 +G+++RLSVAVVVNY+ +AD K PL ++ Q+E L ++AMG+ +KRGD++NV Sbjct: 376 MNVGDIERLSVAVVVNYKTLADGKP----LPLTADQMKQIEDLTREAMGFSDKRGDTLNV 431 Query: 457 VNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIAAAAAALYFMFVRPAMRRAFPPPE 516 VNS FS+V + +LP+W+Q I A +WL + A L+ VRP + R + Sbjct: 432 VNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAK 491 Query: 517 PVAPALAAPDDPVALDGLPAPDRADEPDPLLLGFENEKNRYERNLDYARTIARQDPKIVA 576 + + + R + + L N++ E R ++ DP++VA Sbjct: 492 AAQEQAQVRQE--TEEAV--EVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVA 547 Query: 577 TVVKNWVSDE 586 V++ W+S++ Sbjct: 548 LVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 297 bits (763), Expect = e-102 Identities = 113/324 (34%), Positives = 188/324 (58%) Query: 5 GLTKSALLLMSIGEEEAAEVFKFLAPREVQKIGAAMAALKNVTREQVEGVLQEFAKEAEQ 64 G K+A+LL+SIG E +++VFK+L+ E++ + +A L+ +T E + VL EF + Sbjct: 17 GKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKELMMA 76 Query: 65 HTALSLDSSEYIRSVLTKALGEDKAGVLIDRILQGSDTSGIEGLKWMDSGAVAELIKNEH 124 + +Y R +L K+LG KA +I+ + + E ++ D + I+ EH Sbjct: 77 QEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQQEH 136 Query: 125 PQIIATILVHLDRDQASEIASCFTERLRNDVLLRIATLDGIQPAALRELDDVLTGLLSGS 184 PQ IA IL +LD +AS I S ++ +V RIA +D P +RE++ VL L+ Sbjct: 137 PQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKLASL 196 Query: 185 DNLKRSPMGGIRTAAEILNFMTSNHEEGVLESVRQYDADLAQKIVDQMFVFENLLDLEDR 244 + + GG+ EI+N E+ ++ES+ + D +LA++I +MFVFE+++ L+DR Sbjct: 197 SSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLLDDR 256 Query: 245 AIQMVLKEVESETLIIALKGAPPALRQKFLANMSQRAAELLAEDLDARGPVRVSEVETQQ 304 +IQ VL+E++ + L ALK +++K NMS+RAA +L ED++ GP R +VE Q Sbjct: 257 SIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVEESQ 316 Query: 305 RRILQIVRNLAESGQIVIGGKAED 328 ++I+ ++R L E G+IVI E+ Sbjct: 317 QKIVSLIRKLEEQGEIVISRGGEE 340
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 112 bits (281), Expect = 9e-33 Identities = 71/213 (33%), Positives = 114/213 (53%), Gaps = 10/213 (4%) Query: 15 YQRWEMASFDPPPPPPPPDDA------AAAAAALAEELQRVRDAAHAEGHAAGHVEGQAL 68 ++ W PP P A +L ++L +++ AH +G+ AG EG+ Sbjct: 7 WKTWTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQ 66 Query: 69 GYQAGFDQGREQGFEAGQAEAREQAAQLAA----LAASFREAVSSAEHDLASDLAQLALD 124 G++ G+ +G QG E G AEA+ Q A + A L + F+ + + + +AS L Q+AL+ Sbjct: 67 GHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALE 126 Query: 125 IAQQVVRQHVKHDPAALVAAVRDVLAAEPALSGAPHLAVNPADLPVVEAYLQDDLDTLGW 184 A+QV+ Q D +AL+ ++ +L EP SG P L V+P DL V+ L L GW Sbjct: 127 AARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGW 186 Query: 185 TVRTDTSIERGGCRAHAATGEVDATLPTRWQRV 217 +R D ++ GGC+ A G++DA++ TRWQ + Sbjct: 187 RLRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 250 bits (639), Expect = 1e-80 Identities = 89/455 (19%), Positives = 188/455 (41%), Gaps = 59/455 (12%) Query: 14 APRLRAGDAAYMSDIREALLVRSSAGAQLILYLIAIVLGAGLVWAHFARVEEVTRSEATV 73 P + ++ E + S +L+ Y I L + + +VE V + + Sbjct: 31 TPVREKDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKL 90 Query: 74 VSPSREQLIQSLEGGIVQSVAVREGEVVEKGQLLAKIDPARAQSSYREVLTKALELKASV 133 R + I+ +E IV+ + V+EGE V KG +L K+ A++ + + L+ + Sbjct: 91 THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQ 150 Query: 134 SRARAEAYGV------PLDFP----------EDVKRESGLVAQATATYRARRR------- 170 +R + + + L P E+V R + L+ + +T++ ++ Sbjct: 151 TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLD 210 Query: 171 -------ALDEQVTALEKSQALVRREIAMSEPLAAKGLVSEVEILRMRRQSTDIAAQIAE 223 + ++ E + + + L K +++ +L + + ++ Sbjct: 211 KKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRV 270 Query: 224 RRSR---------------------FTAEASTELSRLEQELAQTNEVLAGRADVLARTDV 262 +S+ F E +L + + LA + + + Sbjct: 271 YKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVI 330 Query: 263 VAPMRGVVKNIRIRTAGGVVQSGEHIMEIAPLDGRVLVEARIKPSDVAFLRPGLPVLVKL 322 AP+ V+ +++ T GGVV + E +M I P D + V A ++ D+ F+ G ++K+ Sbjct: 331 RAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKV 390 Query: 323 SAYDFSIYGGLHGHVVSLGPDTLKDDQKAAMGRPDANYYRLMVETDSDALAAAGKRLPVL 382 A+ ++ YG L G V ++ D ++D + + +++ + + L+ K +P+ Sbjct: 391 EAFPYTRYGYLVGKVKNINLDAIEDQR-------LGLVFNVIISIEENCLSTGNKNIPLS 443 Query: 383 PGMQATVDIRTGEKTVLDYLLKPIF-KAREAFRER 416 GM T +I+TG ++V+ YLL P+ E+ RER Sbjct: 444 SGMAVTAEIKTGMRSVISYLLSPLEESVTESLRER 478
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.6 bits (71), Expect = 0.022 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%) Query: 36 NDSKPTVSGRGDPGSTIHLLVDGVEVGSVVVGANGTWSVALTQPL-NDGEYRLTARASND 94 ++ + S + GS + + DGV G+ V A+G +V +T+ + +G Y + SN Sbjct: 259 PQNQASYSIQASAGSYVAISKDGVLYGTGVANASGVATVNMTKQITENGNYDVVITRSN- 317 Query: 95 VGMSVPSTSYGIQVDVTPPSQP--KIEAATEGAQPTLSGHAEA 135 IQ P QP + A +G + TL A + Sbjct: 318 ----YLPVIKQIQAGEPSPYQPVSNLTATAQGQKVTLKWDAPS 356
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 105 bits (262), Expect = 8e-29 Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 12/142 (8%) Query: 112 AQPQPVVQAQPAAEPVAQ-RHVLLQGSANFAFDSAALTPSARQELDRFLD--VNREARFR 168 + PVV PA P Q +H L+ F F+ A L P + LD+ N + + Sbjct: 194 GEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDG 253 Query: 169 RVTVTGYTDSQGAHAHNVRLSEARARAVATYLRTGGLHAEHFTTVGKGAAEPVASNATAE 228 V V GYTD G+ A+N LSE RA++V YL + G+ A+ + G G + PV N Sbjct: 254 SVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDN 313 Query: 229 GR---------AQNRRVEIELE 241 + A +RRVEIE++ Sbjct: 314 VKQRAALIDCLAPDRRVEIEVK 335
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 74.5 bits (182), Expect = 3e-15 Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 16/172 (9%) Query: 676 GAGGLNAIAVGLQAVASSDHSVAIGSIAQTGVDQPYSVAMGSMVTTNGAGALAIGSRAKA 735 GAGGLNA A G+ HS+AIG+ A+ + +VA+G+ G ++AIG +KA Sbjct: 59 GAGGLNASAKGI-------HSIAIGATAEAA--KGAAVAVGAGSIATGVNSVAIGPLSKA 109 Query: 736 NADNAVAVGNNGVAAVGKSSIAIGDKAMTAAGTVNSVAMGKSANVAQNVTDAIALGANAS 795 D+AV G A K +AIG +A T+ VA+G ++ + +++A+G ++ Sbjct: 110 LGDSAVTYGAASTAQ--KDGVAIGARASTSD---TGVAVGFNSKA--DAKNSVAIGHSSH 162 Query: 796 VASGNNGGIALGANSVADRGNALSVGSNSLQRQIVNVAKGTKNNDAVNVSQL 847 VA+ + IA+G S DR N++S+G SL RQ+ ++A GTK+ DAVNV+QL Sbjct: 163 VAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQL 214 Score = 70.7 bits (172), Expect = 6e-14 Identities = 66/177 (37%), Positives = 102/177 (57%), Gaps = 9/177 (5%) Query: 58 AIGASASTRPATSGLGGAVAIGNKATAAGNNVAFGANASALGEEGAIALGTGANAGGKSS 117 A+G RP G GG N + +++A GA A A + A+A+G G+ A G +S Sbjct: 46 ALGLEYPVRPPVPGAGGL----NASAKGIHSIAIGATAEA-AKGAAVAVGAGSIATGVNS 100 Query: 118 IALGNEAQATGWGAYALGRKAKAAAESSLAIGDSSMATRAGTMAIGSQAAAAAENAIAIG 177 +A+G ++A G A G A A + +AIG + + G +A+G + A A+N++AIG Sbjct: 101 VAIGPLSKALGDSAVTYG-AASTAQKDGVAIGARASTSDTG-VAVGFNSKADAKNSVAIG 158 Query: 178 QSA--AARGADSLALGSYSEADRDNTVSVGTAGFERQIVNVGRGTQATDAVNIAQLK 232 S+ AA S+A+G S+ DR+N+VS+G RQ+ ++ GT+ TDAVN+AQLK Sbjct: 159 HSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLK 215 Score = 68.0 bits (165), Expect = 4e-13 Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 7/161 (4%) Query: 3122 GLQAVSNSDHSVAIGSIAQTGVDQPYAVAMGSMVTTNGAGALAIGSRAKANADNAVAVGN 3181 GL A + HS+AIG+ A+ + AVA+G+ G ++AIG +KA D+AV G Sbjct: 62 GLNASAKGIHSIAIGATAEAA--KGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 3182 NGVVAVGKSSIAIGDKAMTNAGTVNSIAIGTNANVQQNVADAIALGANSQALSSNSVALG 3241 K +AIG +A T+ +A+G N+ + AI ++ A S+A+G Sbjct: 120 ASTAQ--KDGVAIGARASTSD---TGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIG 174 Query: 3242 ANSIANRANALSIGKAGAERQIVNVAKGTQDTDAVSLAQLK 3282 S +R N++SIG RQ+ ++A GT+DTDAV++AQLK Sbjct: 175 DRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLK 215 Score = 48.0 bits (113), Expect = 7e-07 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 3981 GSGSNLIGGTGGSGKDSAEIVAAKPGNGNGNIAVGSGSQIVDGKNNAAAIGAGSKVSADN 4040 G S IG + DSA A +A+G+ + D A+G SK A N Sbjct: 97 GVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSD---TGVAVGFNSKADAKN 153 Query: 4041 GTALGQGASVSSGADNSVALGQGSQATEANTVSVGSDGHERRIVNVADGVKATDAVSKGQ 4100 A+G + V++ S+A+G S+ N+VS+G + R++ ++A G K TDAV+ Q Sbjct: 154 SVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQ 213 Query: 4101 FDRALGGMQGQINDIS 4116 + + Q N S Sbjct: 214 LKKEIEKTQENTNKRS 229 Score = 43.7 bits (102), Expect = 1e-05 Identities = 30/57 (52%), Positives = 37/57 (64%) Query: 2965 GREAIARGPESVAIGANAWATRPQAMALGSGSRANGVNSVAIGYNSVADDDNTVAVG 3021 G A A+G S+AIGA A A + A+A+G+GS A GVNSVAIG S A D+ V G Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYG 118 Score = 43.3 bits (101), Expect = 2e-05 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 2/98 (2%) Query: 2976 VAIGANAWATRPQAMALGSGSR--ANGVNSVAIGYNSVADDDNTVAVGNVGEERRVVHLA 3033 VA+G N+ A ++A+G S AN S+AIG S D +N+V++G+ R++ HLA Sbjct: 141 VAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLA 200 Query: 3034 AGVDDTDAVNMRQLTDAMHSANTKLDAKMTRMVRDVES 3071 AG DTDAVN+ QL + + + ++ + + Sbjct: 201 AGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANA 238 Score = 41.4 bits (96), Expect = 8e-05 Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 17/218 (7%) Query: 3223 AIALGANSQALSSNSVALGANSIANRANALSIG---KAGAERQIVNVAKGTQDTDAVSLA 3279 +IA+GA ++A +VA+GA SIA N+++IG KA + + A T D V++ Sbjct: 72 SIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIG 131 Query: 3280 QLKGLADVVAGGTGFDKNGDVTAPTYTIDGKEYHNVNDALQAAAKSGGDGSSGTDPNAVA 3339 +D G N A G H + + A GD S N+V+ Sbjct: 132 ARASTSDT---GVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAI--GDRSKTDRENSVS 186 Query: 3340 YDGELKDKVTLAGQNGTTLSNVAAGKADTDAVNVSQLKSSGLVGEDGKSRAAVTYDKNTD 3399 E ++ L+++AAG DTDAVNV+QLK ++ ++ + N + Sbjct: 187 IGHESLNR---------QLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANAN 237 Query: 3400 GTPNYKSATLAGEGGTTLTNVKAGALSATSTDAVNGSQ 3437 + KS+++ G + A L +A S+ Sbjct: 238 AYADNKSSSVLGIANNYTDSKSAETLENARKEAFAQSK 275 Score = 37.6 bits (86), Expect = 0.001 Identities = 26/59 (44%), Positives = 39/59 (66%) Query: 527 AAGMQANALGKNSVAIGSQANATNVDTLAIGSGARASGVNSIAIGVNSVAADANTVSIG 585 A G+ A+A G +S+AIG+ A A +A+G+G+ A+GVNS+AIG S A + V+ G Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYG 118 Score = 35.6 bits (81), Expect = 0.004 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 17/115 (14%) Query: 537 KNSVAIGSQANATNVDTLAIGSGARASGVNSIAIGVNS-VAAD---------------AN 580 K+ VAIG++A+ ++ +A+G ++A NS+AIG +S VAA+ N Sbjct: 125 KDGVAIGARASTSDTG-VAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDREN 183 Query: 581 TVSIGDVGATRRIVNVSDGVDDTDAVNMKQLTNVMHSANTKLDAKMTRMVRDVES 635 +VSIG R++ +++ G DTDAVN+ QL + + + ++ + + Sbjct: 184 SVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANA 238 Score = 34.9 bits (79), Expect = 0.008 Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 9/215 (4%) Query: 785 TDAIALGANASVASGNNGGIALGANSVADRGNALSVGSNSLQRQIVNVAKGTKNNDAVNV 844 +IA+GA A A G +A+GA S+A N++++G S V G A + Sbjct: 70 IHSIAIGATAEAAKG--AAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYG-----AAST 122 Query: 845 SQLTGVTNALGGGAGIGTDGNITAPTYKVGDTTYNNVGDALDAMAKNGGSDPNAVSYDSA 904 +Q GV A+G A G K +G + A +G S + Sbjct: 123 AQKDGV--AIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTD 180 Query: 905 TKDKVTLAGGATGTTLSNVKAGTADMDAVNVSQLKSSGLIGEDGKSLAAITYDKNTDGTP 964 ++ V++ + L+++ AGT D DAVNV+QLK ++ + + N + Sbjct: 181 RENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYA 240 Query: 965 NYKSATLAGEGGTTLTNVKAGALSATSTDAVNGSQ 999 + KS+++ G + A L +A S+ Sbjct: 241 DNKSSSVLGIANNYTDSKSAETLENARKEAFAQSK 275
>cloacin#Cloacin signature. Length = 551 Score = 31.6 bits (71), Expect = 6e-04 Identities = 17/45 (37%), Positives = 22/45 (48%) Query: 23 NAAAGGNGGGGGNGGGHGAGGSGGNAGGMSGGHMSGQALSNSNGF 67 G+G G G GHG GG GN+GG SG + A++ F Sbjct: 46 WGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAF 90 Score = 27.8 bits (61), Expect = 0.012 Identities = 12/35 (34%), Positives = 15/35 (42%) Query: 18 GAVSANAAAGGNGGGGGNGGGHGAGGSGGNAGGMS 52 G + GG G G GG +GG G G +S Sbjct: 48 GGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLS 82 Score = 26.2 bits (57), Expect = 0.043 Identities = 13/35 (37%), Positives = 17/35 (48%) Query: 18 GAVSANAAAGGNGGGGGNGGGHGAGGSGGNAGGMS 52 G+ S GG+G G G G G+ GGSG + Sbjct: 49 GSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 57.5 bits (139), Expect = 2e-11 Identities = 55/252 (21%), Positives = 99/252 (39%), Gaps = 42/252 (16%) Query: 34 LKRKTLALSIAAAGLCAGTHAHAQSSVQLYGLMDLSFPTYRTHADANGKHVIGMGNEGEP 93 +K+ +AL++AA A + V LYG + T R+ A NG + Sbjct: 1 MKKSLIALTLAA------LPVAAMADVTLYGTIKAGVETSRSVAH-NGAQAASVETGTGI 53 Query: 94 WFSGSRWGLRGAEDIGGGTKIIFRLESEFVVANGQMEDEGQIFDRDAWVGVEDERFGKLT 153 GS+ G +G ED+G G K I+++E + +A + +R +++G++ FGKL Sbjct: 54 VDLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGT----DSGWGNRQSFIGLKGG-FGKLR 108 Query: 154 AGFQNTIARDSAAIYGDAYGSAKLTTEEGGWTNSNNFKQMIFYA---AGPTGTRYNNGLA 210 G N++ +D T + W + +++ + A A RY++ Sbjct: 109 VGRLNSVLKD--------------TGDINPWDSKSDYLGVNKIAEPEARLISVRYDS--- 151 Query: 211 WKKLFSNGIFASAGYQFSNSTAFATGSAYQLALGYNGGPFNVSGFYNHVNH-------NG 263 F+ G+ S Y +++ +Y Y G F V + H N Sbjct: 152 --PEFA-GLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNI 208 Query: 264 FRNQTFSVGGNY 275 + Q + Y Sbjct: 209 EKYQIHRLVSGY 220
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 95.7 bits (238), Expect = 4e-25 Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 1/126 (0%) Query: 2 KLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKE 61 +L+ +D+A + + L + V + + D V+ D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARI-RALIRRQA 120 +L R+++ ++PVL+++A + + GA DY+ KPF+ EL+ I RAL + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GVATTQ 126 + + Sbjct: 125 RPSKLE 130
>PF06580#Sensor histidine kinase Length = 349 Score = 52.9 bits (127), Expect = 1e-09 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 26/128 (20%) Query: 338 LGERLDV--AGSDSLLTALV-----MNLVDNAVRY----TQPGGCVTVVARRGGDTVVLD 386 +RL + +++ V LV+N +++ GG + + + TV L+ Sbjct: 236 FEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295 Query: 387 VVDNGPGIPAEARPHVFKRFYRVAADTEGSGLGLAIVRE-IAQAHGGSAMLAPGPGNRGI 445 V + G + E +G GL VRE + +G A + + Sbjct: 296 VENTGSLALKNTK--------------ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV 341 Query: 446 VVTVRLPA 453 V +P Sbjct: 342 NAMVLIPG 349
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 36.8 bits (85), Expect = 2e-05 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Query: 21 SRRVRGFTLIELMIAIAILAVVAILAWRGLDQIMRGRDK--VASAMEDERVFAQMFDQMR 78 + + RGFTL+E+M+ I I+ V+A L + +M ++K A+ D D + Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLV---VPNLMGNKEKADKQKAVSDIVALENALDMYK 60 Query: 79 ID 80 +D Sbjct: 61 LD 62
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 28.4 bits (63), Expect = 0.007 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 8/55 (14%) Query: 13 RGFTMIEVLVALAIIAVALAASIRAVGTMANNASDLHHRLLAGWSADNALAQLRL 67 RGFT++E+++ L ++ V+ + A +++ A + AQLR Sbjct: 4 RGFTLLEMMLILLLMGVSAGMVLLAFPASRDDS--------AAQTLARFEAQLRF 50
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 46.9 bits (111), Expect = 4e-09 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 10/84 (11%) Query: 34 RARGFTLLEMLVVLVIAGLLVSLASLSLTRNPRTDLREEAQRIALLFETAGDEAQVRARP 93 R RGFTLLEM+++L++ G+ + L+ + + R + Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQF 61 Query: 94 IAWQPTAHGFRFDVSSPDGWRTLR 117 G PD W+ L Sbjct: 62 F-------GVSVH---PDRWQFLV 75
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 188 bits (478), Expect = 1e-64 Identities = 66/139 (47%), Positives = 92/139 (66%), Gaps = 3/139 (2%) Query: 11 AVRRQRGFTLIEIMVVVAILGILAALIVPKIMSRPDEARRIAAKQDIGTIMQALKLYRLD 70 A +QRGFTL+EIMVV+ I+G+LA+L+VP +M ++A + A DI + AL +Y+LD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 71 NGRYPTQEQGLNALIQKPSTDPIPNNWKDGGYLERLPNDPWGNGYKYLNPGVHGEIDVFS 130 N YPT QGL +L++ P+ P+ N+ GY++RLP DPWGN Y +NPG HG D+ S Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLS 122 Query: 131 YGADGKEGGESNDSDIGSW 149 G DG+ G E DI +W Sbjct: 123 AGPDGEMGTE---DDITNW 138
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 380 bits (978), Expect = e-132 Identities = 166/406 (40%), Positives = 262/406 (64%), Gaps = 2/406 (0%) Query: 1 MPAFRFEAIDSAGRPQKGVIDADSARGARGQLRTQGLTPLVVEPAASATRGARSQRLAFG 60 M + ++A+D+ G+ +G +ADSAR AR LR +GL PL V+ + + S L+ Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 R--KLSQREQAILTRQLASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVLGGHSL 118 R +LS + A+LTRQLA+L+ A +PL+EAL + +Q+E+ ++ +LMAA+R++V+ GHSL Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 119 ANALGQHPRDFPEIYRALVAAGEHTGKLGIVLSRLADYIEQSNALKQKILLAFTYPGIVT 178 A+A+ P F +Y A+VAAGE +G L VL+RLADY EQ ++ +I A YP ++T Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 179 LIAFGIVTFLLSYVVPQVVNVFASTKQQLPILTVVMMALSEFVRHWWWAILITVALVVWF 238 ++A +V+ LLS VVP+VV F KQ LP+ T V+M +S+ VR + +L+ + Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 239 VKATLSRDGPRLAFDRWVLTAPLAGKLVRGYNTVRFASTLGILTAAGVPILRALQAAGET 298 + L ++ R++F R +L PL G++ RG NT R+A TL IL A+ VP+L+A++ +G+ Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 299 LSNRAMRANIDDAIVRVREGSALSRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAAEG 358 +SN R + A VREG +L +AL FPP++ H+I SGE +G++ +ML+RAA+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 359 EARELERRTMFLTSLLEPLLILAMGGIVLVIVLAVMLPIIELNNMV 404 + RE + L EPLL+++M +VL IVLA++ PI++LN ++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 394 bits (1013), Expect = e-129 Identities = 201/692 (29%), Positives = 325/692 (46%), Gaps = 87/692 (12%) Query: 13 TTLIVAGIIVSQAAYAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVSERSV 72 T LI A ++ AA + + +F DI + + KT+I+DP V+G + + S + Sbjct: 13 TLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDML 72 Query: 73 PEDQALKTLQSALRMQGFALV-QDHGVLKVVPEADAKLQGVPTYIGNAPRARGDQVITQV 131 E+Q + S L + GFA++ ++GVLKVV DAK VP +A GD+V+T+V Sbjct: 73 NEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPV-ASDAAPGIGDEVVTRV 131 Query: 132 FELHNESANNLLPVLRPLI--SPNNTVTAYPANNTIVVTDYADNVRRIAQIIAGVDSAAG 189 L N +A +L P+LR L + +V Y +N +++T A ++R+ I+ VD+A Sbjct: 132 VPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGD 191 Query: 190 AQVQVIPLRNANAIDLAAQLQKMLDPGAIGNSDATLKVSVTADPRTNSLMLRASSASRLA 249 V +PL A+A D+ + ++ + ++ +V AD RTN++++ SR Sbjct: 192 RSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSR-Q 250 Query: 250 AAKRIVQQLDAPSGVPGNMHVVPLRNADAVKLAKTLRGMLGKGGNDSGSSASSNDANSFN 309 +++QLD GN V+ L+ A A L + Sbjct: 251 RIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEV------------------------- 285 Query: 310 QSGGSSASGNFSTGTSGTPPLPSGGLGGGSSSSSAYGSGSSGSGGVGSGGLLGGDKDKSD 369 L G SS+ + + + Sbjct: 286 -------------------------LTGISSTMQSEKQAAKPVAALDKNI---------- 310 Query: 370 DNQPGGMIQADAATNSLIITASDPVYRNLRSVIDQLDARRAQVYIEALIVELNSTTQGNL 429 +I+A TN+LI+TA+ V +L VI QLD RR QV +EA+I E+ NL Sbjct: 311 ------IIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNL 364 Query: 430 GIQWQVASGQFLGGTNLAPTAGTGLGNSIVNLTSGG-TAATTGLAANLAGLSQGLNIGWL 488 GIQW + TN T + + G +++ ++ G++ G Sbjct: 365 GIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAG------ 418 Query: 489 HNMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGT 548 F LL + + ++L+TP+++TLDN EA VGQ VP+ TGS + + Sbjct: 419 ---FYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGS----QTTS 471 Query: 549 TSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAV--VSGTTNAQTGPTFTKRSI 606 N FNT +R+ VG+ L VKPQI +G + L++ E S+V + +T++ G TF R++ Sbjct: 472 GDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTV 531 Query: 607 QSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRP 666 + +L +GE +V+GGL+ + + KVPLLGDIP IG LFRS SK+ K NLM+F+RP Sbjct: 532 NNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRP 591 Query: 667 VIISDRSTAQEVTANRYDYIQGVTGAYKSDNN 698 +I DR ++ ++ +Y + N Sbjct: 592 TVIRDRDEYRQASSGQYTAFNDAQSKQRGKEN 623
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 108 bits (271), Expect = 1e-34 Identities = 45/88 (51%), Positives = 58/88 (65%) Query: 2 NKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDAVQLIGFGSFGSGKRAARTGR 61 NKQ+LI VA T +K + +D + + ++KG+ VQLIGFG+F +RAAR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGETIKIPAAKTVKFTAGKAFKDAV 89 NP+TGE IKI A+K F AGKA KDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.9 bits (155), Expect = 1e-14 Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 2/142 (1%) Query: 26 RPRQSRAQATSDALQQAFVQLLLERGYAKATIREIAAVAGVSIGTFYEYFGDKQSLAALC 85 R + AQ T + ++L ++G + ++ EIA AGV+ G Y +F DK L + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 86 IHRRVQALADRLRDAAHGLGGAPRAELAAALVDVQVDAI--GADAALWGAFFALERQVSP 143 + + + G P + L L+ V + L F V Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 144 LAAYRRHYDAYVALWRDAFAQA 165 +A ++ D Q Sbjct: 123 MAVVQQAQRNLCLESYDRIEQT 144
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.002 Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 117 DAEDARHQLERRIAALEAERERLESLRNAAQNDQVPRLFLLQNEHALVLLNAELDWARSV 176 + ++ R E+ RL+ + + + +L+ E+ V EL +S Sbjct: 215 ERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQ 274 Query: 177 VEHLKIGALR 186 +E ++ L Sbjct: 275 LEQIESEILS 284
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 26.6 bits (58), Expect = 0.040 Identities = 12/31 (38%), Positives = 20/31 (64%) Query: 81 NSLLDEHIGHVDARLAELTHLRDQLTELRRQ 111 +SL+DEH+ +L ELT + ++L L R+ Sbjct: 700 SSLMDEHLVEQREKLRELTTIAERLNRLERE 730
>cloacin#Cloacin signature. Length = 551 Score = 27.4 bits (60), Expect = 0.020 Identities = 12/23 (52%), Positives = 14/23 (60%) Query: 9 GGHGRGHGGGHGGGGHGDGHHGG 31 GG G G+GGG+G G G G G Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGN 80 Score = 26.2 bits (57), Expect = 0.050 Identities = 12/27 (44%), Positives = 13/27 (48%) Query: 10 GHGRGHGGGHGGGGHGDGHHGGAGREG 36 G G G GHG GG GG+G G Sbjct: 53 GIHWGGGSGHGNGGGNGNSGGGSGTGG 79
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 46.1 bits (109), Expect = 7e-08 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 1/91 (1%) Query: 38 ALAHHQADRLEEAETLYRRILDAEPRHADALHLLGLIGHQYGRYHEATELIMAAIEIKP- 96 A +Q+ + E+A +++ + + + LG G+Y A + Sbjct: 43 AFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIK 102 Query: 97 DATYYYNLGNVMQANNRPAAAAECFRLAIEL 127 + + ++ + A A LA EL Sbjct: 103 EPRFPFHAAECLLQKGELAEAESGLFLAQEL 133
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 183 bits (466), Expect = 9e-58 Identities = 81/336 (24%), Positives = 143/336 (42%), Gaps = 40/336 (11%) Query: 5 SVLVTGGAGFLGSHLCERLVHAGYDVMCVDNFHTGSKRNIEH----LIGQVNFEVIRHDV 60 LVTG AGF+G H+ +RL+ AG+ V+ +DN + +++ L+ Q F+ + D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 61 W-------LPLYVEADRVFNMACPASPVHYQ-SDPVSTVKTAVLGAINMLGLAKRCG-AR 111 L +RVF + V Y +P + + + G +N+L + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLA-VRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 112 ILQASTSEVYGDAQQHPQQESYWGNVN-PNGLRACYDEGKRCAETLFFDYHRQHGVDIRV 170 +L AS+S VYG ++ P +V+ P L Y K+ E + Y +G+ Sbjct: 121 LLYASSSSVYGLNRKMPFSTD--DSVDHPVSL---YAATKKANELMAHTYSHLYGLPATG 175 Query: 171 VRIFNTYGPRMRADDGRVVSNFIMQALRGEPITLYGDGSQTRSFCYVDDLVEGLLRMM-- 228 +R F YGP R D + F L G+ I +Y G R F Y+DD+ E ++R+ Sbjct: 176 LRFFTVYGPWGRPD--MALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 229 ----NQDDDTGP------------INLGNPSEITIRELAECVLRLTGSKSRIEYRPLPAD 272 + N+GN S + + + + + G +++ PL Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPG 293 Query: 273 DPLQRRPDIGRARQRLDWQPGIALEDGLKETIAHFR 308 D L+ D + + + P ++DG+K + +R Sbjct: 294 DVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYR 329
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 42.2 bits (99), Expect = 2e-06 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 1/98 (1%) Query: 38 PDAMHFLGLLACQLKQYDAGLALMERSLAARP-DASYFNNLGNMLRECGRLDDAIAHYRR 96 + ++ L Q +Y+ + + D+ +F LG + G+ D AI Y Sbjct: 36 LEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 95 Query: 97 AVALRPDYPEAHNNLGNALRDARDPAEAMQSCSRAIEL 134 + P + L + AEA A EL Sbjct: 96 GAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 33.0 bits (75), Expect = 0.003 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 3/109 (2%) Query: 237 SDDASLHNNYAGVLRDAGDLDAAAAHYARAIALDASLAAAHANLSGVRRRQARYAQALVH 296 SD + A +G + A + LD + L R+ +Y A+ Sbjct: 33 SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 92 Query: 297 AQEAIRIAPHLADAHNQAGNAHHGLGDLVAAQACYRTALEL---NPADS 342 + A G+L A++ A EL Sbjct: 93 YSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFK 141 Score = 32.2 bits (73), Expect = 0.005 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 5/96 (5%) Query: 138 YAEAYNNLGNVLQDLGELDAAAASYGKAIAFHPAYAEAHSNLGNVLRTQERHADAIVHYR 197 Y+ A+N G+ + A + + LG + ++ AI Y Sbjct: 40 YSLAFN-----QYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYS 94 Query: 198 RAIELSPALPAACHGLGLSLWALGELSEAVSVLGAA 233 + P L GEL+EA S L A Sbjct: 95 YGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLA 130
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 51.9 bits (124), Expect = 9e-10 Identities = 19/86 (22%), Positives = 39/86 (45%) Query: 285 QQGEYEESLRLCRHAIELDPELADAYNFLGLAYHNLDRMAASELSHRHAIDLNPDDADAH 344 Q G+YE++ ++ + LD + + LG + + + S+ + ++ + Sbjct: 48 QSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFP 107 Query: 345 HNLAAALFRLDKLDEAMSEYRIAQEL 370 + A L + +L EA S +AQEL Sbjct: 108 FHAAECLLQKGELAEAESGLFLAQEL 133 Score = 40.7 bits (95), Expect = 5e-06 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 10/133 (7%) Query: 3 DIQQALQEALTHHQAGRLGEAKTLYDAILHAQPGQPDAMHFLGLLACQLKQYDAGLALME 62 + Q A++ L T+ + + ++ L Q +Y+ + + Sbjct: 10 EYQLAMESFL--------KGGGTIAM-LNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQ 60 Query: 63 RSLAERP-DASYFNNLGNMLRECGRLDDAIAHYRRAVALRPDYPEAHNNLGNALRDARDP 121 D+ +F LG + G+ D AI Y + P + L + Sbjct: 61 ALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGEL 120 Query: 122 AEAMRSCSRAIEL 134 AEA A EL Sbjct: 121 AEAESGLFLAQEL 133 Score = 31.1 bits (70), Expect = 0.010 Identities = 14/103 (13%), Positives = 33/103 (32%) Query: 301 ELDPELADAYNFLGLAYHNLDRMAASELSHRHAIDLNPDDADAHHNLAAALFRLDKLDEA 360 E+ + + L + + + + L+ D+ L A + + D A Sbjct: 30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 89 Query: 361 MSEYRIAQELGVDPVKIQLTLGDILWAKRDFSGAVAAFREAVE 403 + Y + + + + L K + + A + A E Sbjct: 90 IHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQE 132
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 35.7 bits (82), Expect = 3e-04 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 9/105 (8%) Query: 10 NAAFVHHQAGRFDDARMLYEAIRRDEPDQPDATHFLGLLAC--QLGQFPAGLALMERAIA 67 + AF +Q+G+++DA +++A+ + FLGL AC +GQ+ + Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSR--FFLGLGACRQAMGQYDLAIHSYSYGAI 98 Query: 68 LRA-DPVYLNNFGNMLRAHGRLGDAIGAYRRAIALAPDYAEAHSN 111 + +P + + + G+ A + LA + + Sbjct: 99 MDIKEPRFPFHAAE---CLLQKGELAEA-ESGLFLAQELIADKTE 139 Score = 31.1 bits (70), Expect = 0.011 Identities = 18/110 (16%), Positives = 35/110 (31%) Query: 127 LSCAQALALRPDYAPAFNNLGNALQDKGELDAAARAYEKAIALDPGYAQARFNQGNVLRA 186 + A + D +L G+ + A + ++ LD ++ G +A Sbjct: 23 GTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQA 82 Query: 187 QRRPDEAIACYREAIALQPHLHAAHHALGVLLFERDDREAAIASLTRAAE 236 + D AI Y + L ++ + A + L A E Sbjct: 83 MGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQE 132
>FLAGELLIN#Flagellin signature. Length = 507 Score = 98.2 bits (244), Expect = 2e-25 Identities = 96/268 (35%), Positives = 134/268 (50%), Gaps = 4/268 (1%) Query: 2 LNINTNILSLTTQTNLSGSQSALSQAINRLSSGKRVNTAADDAAGLAISTTQTAAINALT 61 INTN LSL TQ NL+ SQS+LS AI RLSSG R+N+A DDAAG AI+ T+ I LT Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 62 QGVSNANNGISMIQTAAGALQSTVDNLQRIRTLAVESGDGSLDSNARANLQAEVTTRLGE 121 Q NAN+GIS+ QT GAL +NLQR+R L+V++ +G+ + ++Q E+ RL E Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 122 IDRVATQTTFNGQTILSNAGNVTFQVGASANQTVAVNFGATVWTSTGAGLSL----SGLT 177 IDRV+ QT FNG +LS + QVGA+ +T+ ++ S G T Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEAT 181 Query: 178 VSDQTSAQSAITAIDTALKNVNTFQATLGAAQNTFQAAITTTQTQATNMSAARSQITDAD 237 V D S+ +T DT N ++ + + T + +A TD Sbjct: 182 VGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDA 241 Query: 238 FATETANLSKAQVLQQAGISVLAQANSL 265 +L K A A ++ Sbjct: 242 ENNTAVDLFKTTKSTAGTAEAKAIAGAI 269 Score = 71.2 bits (174), Expect = 4e-16 Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 2/261 (0%) Query: 14 QTNLSGSQSALSQAINRLSSGKRVNTAADDAAGLAISTTQTAAINALTQGVSNANNGISM 73 + S + ++A + K T T N VS NG + Sbjct: 249 LFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKV 308 Query: 74 IQTAAGALQSTVDNLQRIRTLAVESGDGSLDSNARANLQAEVTTRLGEIDRVATQTTFNG 133 T A + + ++ + + + + ++ + G Sbjct: 309 TLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNES--AKLSDLEANNAVKG 366 Query: 134 QTILSNAGNVTFQVGASANQTVAVNFGATVWTSTGAGLSLSGLTVSDQTSAQSAITAIDT 193 ++ ++ G A T+A T++G ++ + + S + + +ID+ Sbjct: 367 ESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDS 426 Query: 194 ALKNVNTFQATLGAAQNTFQAAITTTQTQATNMSAARSQITDADFATETANLSKAQVLQQ 253 AL V+ +++LGA QN F +AIT TN+++ARS+I DAD+ATE +N+SKAQ+LQQ Sbjct: 427 ALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQ 486 Query: 254 AGISVLAQANSLPQQVLKLLQ 274 AG SVLAQAN +PQ VL LL+ Sbjct: 487 AGTSVLAQANQVPQNVLSLLR 507
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.9 bits (210), Expect = 1e-22 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 TILAIDDSATMRALLQATLAQAGYDVTVAPDGEAGFDMAATVPYDLVLTDQNMPRRSGLE 63 TIL DD A +R +L L++AGYDV + + + A DLV+TD MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 VIAALRKLSAYADTPILVLTTEGSDAFKDAAREAGATGWIEKPIDPAVLVDLVATLSEQT 123 ++ ++K A D P+LV++ + + A E GA ++ KP D L+ ++ + Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>PF06580#Sensor histidine kinase Length = 349 Score = 46.8 bits (111), Expect = 2e-07 Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 52/151 (34%) Query: 446 ELDKSLIERIIDPLT--HLVRNSLDHGIETVDKRVAAGKDAVGQLVLSAAHHGGNIVIEV 503 +++ ++++ + P+ LV N + HGI G+++L G + +EV Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEV 296 Query: 504 SDDGGGLNRERILAKAAKQGMQVSDNISDDEVWQLIFAPGFSTAETVTDVSGRGVGMDVV 563 + G + G G+ V Sbjct: 297 ENTGSLALKNTK--------------------------------------ESTGTGLQNV 318 Query: 564 KRNIQSMGG---HVEISSQAGRGTTTRIVLP 591 + +Q + G +++S + G +++P Sbjct: 319 RERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.4 bits (86), Expect = 2e-04 Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 24/198 (12%) Query: 401 EVRSLAQRSASAAKEIKQLIGDSAERVESGSALVARAGSTMDEIVQAVRRVTDIMGEISA 460 +V S+ + A+ + + A S + S + Sbjct: 1006 DVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNE--------QD 1057 Query: 461 ASDEQSTGIEQVNRAVGQMDSVTQQNAALVEEAAAAAASLEEQTRQMKAIVSSWRVTGGI 520 A++ + E A + + TQ N E A + + + E QT + K Sbjct: 1058 ATETTAQNREVAKEAKSNVKANTQTN----EVAQSGSETKETQTTETKE----------- 1102 Query: 521 AMAPVRGAARPAAQTQAPASPSESRHEAAPVAHAPQAAQPAAQPARRAAPAPHAAAPATR 580 A V + +T+ + + +P + QP A+PAR P + P ++ Sbjct: 1103 -TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 581 NAAKPATDSAARASKDAP 598 T+ A+ + Sbjct: 1162 TNTTADTEQPAKETSSNV 1179
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 30.5 bits (68), Expect = 0.007 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 7/75 (9%) Query: 176 TEREAALAREADRVRAGRQRAHVELFAAKRPAAPPPARPRIELFGARGAGGAQTTNAKTG 235 + +AL VR G R+H++ + P PP RP G GAG A+ T T Sbjct: 133 SHSHSALHAPGTPVREG-LRSHLD---PRTPPLPPRERPHTS--GHHGAGEARATAPSTV 186 Query: 236 SPYAGSPSAANLSRK 250 SPY G + A LS + Sbjct: 187 SPY-GPEARAELSSR 200
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.7 bits (168), Expect = 7e-15 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 15/146 (10%) Query: 1 MQKIKVLCVDDSALIRSLMTEIINSQP-DMTVCATAPDPLVARDLIKQHNPDVLTLDVEM 59 M +L DD A IR+++ + ++ D+ + + A I + D++ DV M Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAAT---LWRWIAAGDGDLVVTDVVM 57 Query: 60 PRMDGLDFLEKLMRLRP-MPVVMVSSLTERGSEITLRALELGAVDFVTKPRVGIRDGMLD 118 P + D L ++ + RP +PV+++S+ ++A E GA D++ KP D Sbjct: 58 PDENAFDLLPRIKKARPDLPVLVMSAQNT--FMTAIKASEKGAYDYLPKP--------FD 107 Query: 119 YAEKLADKIRAASRARVRQTPQPQAA 144 E + RA + + R + + Sbjct: 108 LTELIGIIGRALAEPKRRPSKLEDDS 133
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 1e-23 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 1 MDKSMKILVVDDFPTMRRIVRNLLKELGYTNVDEAEDGAAGLARLRGGGFDFVISDWNMP 60 M + ILV DD +R ++ L GY V + A + G D V++D MP Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 NLDGLAMLKEIRADATLTHLPVLMVTAESKKENIIAAAQAGASGYVVKPF 110 + + +L I+ LPVL+++A++ I A++ GA Y+ KPF Sbjct: 59 DENAFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>PERTACTIN#Pertactin signature. Length = 922 Score = 30.8 bits (69), Expect = 0.008 Identities = 26/92 (28%), Positives = 34/92 (36%) Query: 189 ALPGARLPGGAAPMLAGASGDDPFGGAGSLPVADDAVPRLAGTIRDARAGLALFDAGDGG 248 A+PG +PGG P+L G G D L + P+L IR R G Sbjct: 273 AVPGGAVPGGFGPLLDGWYGVDVSDSTVDLAQSIVEAPQLGAAIRAGRGARVTVSGGSLS 332 Query: 249 FATVARGEALGAARVMRVEADAVTLATADGAR 280 E G AR A +++ GAR Sbjct: 333 APHGNVIETGGGARRFPPPASPLSITLQAGAR 364
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 209 bits (532), Expect = 8e-62 Identities = 106/438 (24%), Positives = 178/438 (40%), Gaps = 46/438 (10%) Query: 133 GLAAAFDALARFTGLNIIVGEQVRGTVTLRLNNVRWRDAFDTLLDTHGLAMSRRGNVIWV 192 G AA L G++ TV L W A D + L + + Sbjct: 171 GRAAVIKRLLTIVERVDNAGDRSVVTVPLS-----WASAADVVKLVTELNKDTSKSALPG 225 Query: 193 TPAAELAARERERF-------ETHAR-AAELEPL--------ASRTFALHYPRALDVQRL 236 + A + A ER + R A ++ L ++ L Y +A D+ + Sbjct: 226 SMVANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEV 285 Query: 237 L-----------AGATGQRLLSKRGAAAADPRTNLLFVTDLAPRIAQIAGLIDAIDRPSR 285 L A L K A +TN L VT + + +I +D Sbjct: 286 LTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP 345 Query: 286 QVRIEARIVEGEQGFSRNLGARIALRAQGRAP---TADGAASATDTRNALDLAARPLGGF 342 QV +EA I E + NLG + A + G + ++A N + Sbjct: 346 QVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSL 405 Query: 343 EAATAGFTLFAA-PLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQGSELPYQ- 400 +A + F AA + L+AL + + I+++P +VT D ++A G E+P Sbjct: 406 ASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLT 465 Query: 401 ----AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDLDVTKDSIGEPTAA-----GPA 451 N + V+ + +KL+V+PQI V+L+++ S+ + ++ G Sbjct: 466 GSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGAT 525 Query: 452 IHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSEL 511 +T+ V V V +G TV +GG+ ++ D +VPLLG IPV+GALFR +++ + L Sbjct: 526 FNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNL 585 Query: 512 VVFITPTVVGTQCATSSA 529 ++FI PTV+ + A Sbjct: 586 MLFIRPTVIRDRDEYRQA 603 Score = 67.6 bits (165), Expect = 5e-14 Identities = 49/292 (16%), Positives = 109/292 (37%), Gaps = 21/292 (7%) Query: 126 SLNLQGAGLAAAFDALARFTGLNIIVGEQVRGTVTLR----LNNVRWRDAFDTLLDTHGL 181 S + +G + + +++ +I+ VRGT+T+R LN ++ F ++LD +G Sbjct: 31 SASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLDVYGF 90 Query: 182 AMSRRGNVIWVTPAAELAARERERFETHARAAELEPLASRTFALHYPRALDVQRLLAGAT 241 A+ N + ++ A + A + + +R L A D+ LL Sbjct: 91 AVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPLLRQLN 150 Query: 242 GQRLLSKRGAAAADPRTNLLFVTDLAPRIAQIAGLIDAIDRPSRQVRIEARIVEGEQGFS 301 + G+ +N+L +T A I ++ +++ +D + + + Sbjct: 151 DN---AGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDRSVVTVPLSWASAADV 207 Query: 302 RNLGARIALRAQGRA-PTADGAASATDTR-NALDLAARPLGGFEAATAGFTLFAAPLSRV 359 L + A P + A D R NA+ ++ P + + + Sbjct: 208 VKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEP-----NSRQRII----AMIKQ 258 Query: 360 LDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQGSELPYQAKVGNGVSGVQ 411 LD + + QG +++ +D V+ + S + + + V+ + Sbjct: 259 LDRQQA---TQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALD 307
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 27.5 bits (61), Expect = 0.032 Identities = 15/39 (38%), Positives = 21/39 (53%) Query: 66 ESQVIADLTQRENIVLATGGGAVLRAENRDCLKGHGIVI 104 E++ I L +R IV+A+GGG V +KG VI Sbjct: 175 EAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVI 213
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 40.9 bits (95), Expect = 7e-06 Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 15/192 (7%) Query: 124 EKAFVPTIASYYSDA--KTGHLVSMPFNSSTPVLYYNKDAFKKAGLDPNQPPKTWADVQA 181 +KAF + + DA G L++ P L YNKD L PN PPKTW ++ A Sbjct: 108 DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD------LLPN-PPKTWEEIPA 160 Query: 182 DAEKLRKSGMTCGFTTGWQGWIQLENYSVWHALPFASRNNGFDGADAVLEFNKPQQIAHI 241 ++L+ G + + + + F N +D D ++ + A + Sbjct: 161 LDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAK--AGL 218 Query: 242 AFLQQMQKDGTFTYAGRKDEASAKFYSGDCGILTTSSGALANVQKFAKFSYGTGMMPYDA 301 FL + K+ A A F G+ + A +N+ +K +YG ++P Sbjct: 219 TFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDT-SKVNYGVTVLP--- 274 Query: 302 NVKGAPQNAIIG 313 KG P +G Sbjct: 275 TFKGQPSKPFVG 286
>PF05272#Virulence-associated E family protein Length = 892 Score = 36.2 bits (83), Expect = 2e-04 Identities = 15/33 (45%), Positives = 19/33 (57%) Query: 33 VVLVGPSGCGKSTLLRMIAGLETVTDGEIAIGD 65 VVL G G GKSTL+ + GL+ +D IG Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGT 631
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.1 bits (73), Expect = 0.004 Identities = 75/368 (20%), Positives = 125/368 (33%), Gaps = 51/368 (13%) Query: 70 FMRPLGAIVLGAYADRAGRKGALTLSILLMMAGTLVIAVLPTYGTIGVAAPLILVAARLM 129 M+ A VLGA +DR GR+ L +S+ ++A P +L R++ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL--------WVLYIGRIV 105 Query: 130 QGFSAGGEFGSATAFLAEHVPGR-RGFFASWQVASQGLTTLLAAGFGTVLNAQLTAEQMA 188 G + G A A++A+ G R + A G + G + M Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL---------MG 155 Query: 189 AWGWRIPFFFGLLLGPVAYYI-------RSKVDETPEFLAAESTATPLR--DTFASHKAR 239 + PFF L + + K + P A + R A Sbjct: 156 GFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAAL 215 Query: 240 LVAAMGVVVLGTV-ATYLVLFMPTYGVKQLGLAPSAAFAAILVVGVIQ-----MAFAPLV 293 + + ++G V A V+F G + + ++ G++ M P+ Sbjct: 216 MAVFFIMQLVGQVPAALWVIF----GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVA 271 Query: 294 GHWSDRYGRVRVMIAPALGILVLIYPAFAYLVAHPGFGTLIALQVLLAFLMTGYFAALPG 353 +R + MIA G ++L + ++ + VLLA G AL Sbjct: 272 ARLGERRALMLGMIADGTGYILLAFATRGWMA--------FPIMVLLASGGIG-MPALQA 322 Query: 354 LLSEVFPVQTRTTGMSLAYNVAVTIFGG-FGPFIIAWLIRATGMKTAPSFYLMFAAVLSL 412 +LS V G A+T GP + + A+ + T + + A L L Sbjct: 323 MLSRQ--VDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS-ITTWNGWAWIAGAALYL 379 Query: 413 AALFVLRR 420 L LRR Sbjct: 380 LCLPALRR 387 Score = 29.8 bits (67), Expect = 0.022 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Query: 240 LVAAMGVVVLGTVATYLVL-FMPTYGVKQLGLAPSAAFAAILVV---GVIQMAFAPLVGH 295 L+ + V L V L++ +P ++ L + +++ ++Q A AP++G Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGL-LRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 296 WSDRYGRVRVMIAPALG 312 SDR+GR V++ G Sbjct: 66 LSDRFGRRPVLLVSLAG 82
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 320 bits (822), Expect = e-111 Identities = 97/320 (30%), Positives = 170/320 (53%), Gaps = 17/320 (5%) Query: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60 ++ + + F R ++V +A+V GL+ ++F GGT I + A Sbjct: 5 LKLVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAID 64 Query: 61 LEPVRATLGKLGYADAQVQNFGTSR------NVLIRLQLKEGLTSAQQ--------SDQV 106 + RA L L D + +IR+Q++E A+ ++V Sbjct: 65 VGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKV 124 Query: 107 MTALKAQSPDVSLQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSIRFEWKYAVAGII 166 TAL A P + + E VGP+V EL + +L + I+ Y+ +RFEW++A+ ++ Sbjct: 125 ETALTAVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVV 184 Query: 167 ANLHDVVIILGFFAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRRERRMSVSE 226 A +HDV++ +G FA Q +F L +AA+L + GYS+N++VV+FDR+RE + + M + + Sbjct: 185 ALVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRD 244 Query: 227 VINHAITTTMSRTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSL 286 V+N ++ T+SRT++T +T + ++ M +GG + F A+ G+ G YSSV+VA ++ Sbjct: 245 VMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNI 304 Query: 287 AMWLGIKREDLIKEKKGAHD 306 +++G+ R KEKK D Sbjct: 305 VLFIGLDRN---KEKKDPSD 321
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 79.5 bits (196), Expect = 3e-18 Identities = 53/249 (21%), Positives = 108/249 (43%), Gaps = 14/249 (5%) Query: 382 KGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLG 441 + V + E G + G + + L A A + E ++GP + Sbjct: 91 REDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALTAVDPALKITSFE--SVGPKVS 148 Query: 442 ADNIKMGVHSVIWGFCAIAVFM-IAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPG 500 + + V S++ I ++ + + F + +V+ L ++LL V + +++Q L Sbjct: 149 GELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLTVGLFAVLQLKFDLTT 208 Query: 501 IAAIALALGMAIDSNVLINERVREELRA--GQPPQ----LAIQSGYAHAWATILDSNVTT 554 +AA+ G +I+ V++ +R+RE L P + L++ + T++ +TT Sbjct: 209 VAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNETLSR---TVMTG-MTT 264 Query: 555 LIAGLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLKSLAIGQVW 614 L+A + +L +G +R F G+ T +S+V+ ++ +V R K K + + Sbjct: 265 LLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIGLDRNKEKKDPSDKFF 324 Query: 615 RPEGATAGA 623 GA GA Sbjct: 325 S-NGAQDGA 332
>SECA#SecA protein signature. Length = 901 Score = 34.8 bits (80), Expect = 0.002 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 6/100 (6%) Query: 360 AQARVVDEIAHDLTLPHPMQRLLQGDV-----GSGKTVVAALAATQAIDAGYQAALMAPT 414 A RV D+ L M L + + G GKT+ A L A G ++ Sbjct: 74 ASKRVFGMRHFDVQLLGGM-VLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVN 132 Query: 415 EILAEQHARKLRAWLEPLGVSVAWLAGSLKAKEKRAAIEA 454 + LA++ A R E LG++V + A KR A A Sbjct: 133 DYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAA 172
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 87.4 bits (216), Expect = 1e-22 Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 4/180 (2%) Query: 2 IVFVTGASAGFGAAIARAFVKGGHRVVATARRKDRLDAL-AAELGDALLP--FELDVRDR 58 I F+TGA+ G G A+AR G + A ++L+ + ++ +A F DVRD Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 59 AAVEAVPAALPAEFAALDVLVNNAGLALGVEPAHKASLDEWQTMIDTNCSGLVTVTHALL 118 AA++ + A + E +D+LVN AG+ L H S +EW+ N +G+ + ++ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 119 PGMIARGRGHIFNLGSVAGTYPYPGGNVYGATKAFVRQFSLNLRADLIGTPLRVTDIEPG 178 M+ R G I +GS P Y ++KA F+ L +L +R + PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 26.8 bits (59), Expect = 0.036 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 3/62 (4%) Query: 17 GFTLVELMVAIAL---AASIGLFAAPAFNQWHMRERVDARSRALLGALSFARTEATRLGV 73 GFTL+E+M+ + L +A + L A PA + + L GV Sbjct: 5 GFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFFGV 64 Query: 74 RV 75 V Sbjct: 65 SV 66
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.8 bits (69), Expect = 0.002 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 6/115 (5%) Query: 7 SMRGTSLLEAVLAVALLAVVMLAVAGTQLAMTRAQRATIWRERALWLADARIERRRAAAG 66 ++ A AV++L L + G + RA + + L A I R A AG Sbjct: 207 NVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDAPAG 266 Query: 67 ADDGIAALVAASLPGGAMTLDHGPGGVRYMIVGWRGAGAAVSTRCEGAGATVTPP 121 A+ ++PGGA+ GPGG ++ GW G + S+ E A + V P Sbjct: 267 G-----AVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSS-VELAQSIVEAP 315
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 41.0 bits (96), Expect = 2e-07 Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 6 RMRRTAAFTLLELMIVLAIVAVLAGWGIPSYREHVARMHRASAVAALYRAAQYLEM 61 + FTLLE+M+V+ I+ VLA +P+ + + + AV+ + L+M Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDM 58
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 27.5 bits (61), Expect = 0.009 Identities = 6/26 (23%), Positives = 11/26 (42%) Query: 73 DYVHEHPWTSIGVAAGVGVLIGLLIN 98 + H PW + ++IG +N Sbjct: 6 ELAHGLPWLYFSLVFLFSLMIGSFLN 31
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 71.7 bits (176), Expect = 1e-15 Identities = 54/298 (18%), Positives = 110/298 (36%), Gaps = 44/298 (14%) Query: 285 VMVTGAGGSIGSELCRQILRFAPAQLVAFD-LSEYAMYRLAEELRERFPDQPVVPIIGDA 343 +VTGA G IG + +++L A Q+V D L++Y L + E D Sbjct: 3 YLVTGAAGFIGFHVSKRLLE-AGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 344 KDSLLLDQVMSRHAPHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTYRVACAAIRHDVRH 403 D + + + VF + V E N +N+ G + + ++H Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLE-NPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 404 FVLIST---------------DKAVNPTNVMGASKRLAEMVCQALQQTSGGTQFETVRFG 448 + S+ D +P ++ A+K+ E++ G +RF Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY-GLPATGLRFF 179 Query: 449 NVLGSAGS---VIPKFQQQIAKGGPVTV-THPEITRFFMTIPEASQLVLQAS-------- 496 V G G + KF + + +G + V + ++ R F I + ++ +++ Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADT 239 Query: 497 --SMGHGG--------EIFILEMGQPVRIVDLARDLIRLYGFSEGQIRIDFTGLRPGE 544 ++ G ++ + PV ++D + L G + + + L+PG+ Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI---EAKKNMLPLQPGD 294
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 48.7 bits (116), Expect = 4e-08 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 6/88 (6%) Query: 312 SFAWSDIALAINRAVSDNTARVINMSIGGCENWAPTAAIDTLFQLAVAQGQTFSVSSGDS 371 S + I I A+ +I+MS+GG E+ + + AVA ++G+ Sbjct: 123 SGQYDWIIQGIYYAIEQK-VDIISMSLGGPED---VPELHEAVKKAVASQILVMCAAGNE 178 Query: 372 GSVAYGCNGTSVQYPATSPYVVAVGGTT 399 G + YP V++VG Sbjct: 179 GD--GDDRTDELGYPGCYNEVISVGAIN 204
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 29.1 bits (65), Expect = 0.033 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Query: 164 LASMVSFMMFASLAYVAFHVNDPVVMSASII-MMGAVLGFFLWNFPAGLI 212 L ++ MF V DP M I+ M + F FP+GL+ Sbjct: 467 LPILMGVTMFFIQKMSPTTVTDP--MQQKIMTFMPVIFTVFFLWFPSGLV 514
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 164 bits (418), Expect = 2e-50 Identities = 81/353 (22%), Positives = 148/353 (41%), Gaps = 54/353 (15%) Query: 6 TILVTGGAGYIGSHTAVELLDNGYDVVIVDNLVNSKAESVR--RIEKITGRTPAFHQVDV 63 LVTG AG+IG H + LL+ G+ VV +DNL + S++ R+E + FH++D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 64 CDEAALAKVFDAHPITGTIHFAALKAVGESVAKPLEYYQNNIGGLLTVLKVMRERNVRQF 123 D + +F + AV S+ P Y +N+ G L +L+ R ++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 124 VFSSSATVYGVPERSPIDES----FPLSATNPYGQSKLMAEQV------LRDLEVSDPSW 173 +++SS++VYG+ + P P+S Y +K E + L L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVS---LYAATKKANELMAHTYSHLYGL------- 171 Query: 174 RVATLRYFNPVGAHASGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGV 233 LR+F G P G P ++ + A+ + + + V+ G Sbjct: 172 PATGLRFFTVYG----------PWGRP-DMALFKFTKAMLEGKSIDVYN------YGKMK 214 Query: 234 RDYIHVVDLAKGHIAALDALATRDASF---------------VVNLGTGQGYSVLEVVRA 278 RD+ ++ D+A+ I D + D + V N+G +++ ++A Sbjct: 215 RDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQA 274 Query: 279 FEKASGRPVPYELVARRPGDIAECYANPQAAADLIGWRATLGIDEMCADHWKW 331 E A G ++ +PGD+ E A+ +A ++IG+ + + + W Sbjct: 275 LEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 31.6 bits (71), Expect = 0.008 Identities = 11/79 (13%), Positives = 32/79 (40%), Gaps = 7/79 (8%) Query: 303 DINRFGFSPIEAYAWHRPLLAQHRDRYDPRVLSRILKGEPASAADYLDLLAARQAMLDEA 362 D +G +A + + ++ ++ + I + + DY+ +++ + D+ Sbjct: 581 DFYNYG------FALSNYMYNNNMGMFN-KMTNYIKNNDVSGYKDYIASMSSDYGLNDKY 633 Query: 363 AHTVWSRFDALVAPTVPVV 381 + S + + VP+V Sbjct: 634 QDYMDSLLNNIDNLDVPLV 652
>SSBTLNINHBTR#Streptomyces subtilisin inhibitor signature. Length = 144 Score = 29.4 bits (65), Expect = 0.014 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 41 SDPAHAPEVPATQSSVAQAAAAEDVAADGA--SPVTAASEPGAAGTTPAAESASEPASEP 98 + PA AP S++ + AA A VT P A+GT PAA +A Sbjct: 28 ASPATAPASLYAPSALVLTVGHGESAATAAPLRAVTLTCAPTASGTHPAAAAACAELRAA 87 Query: 99 AAEPTAAP 106 +P+A Sbjct: 88 HGDPSALA 95
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.012 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 148 QANRAQQLQADLSVARSQQAEVAQRQQSAREQTQALQVE-KRAAQVQLRDLQEQVRQLEK 206 Q N+ + +L V +SQ ++ SA+E+ Q + K +LR + + L Sbjct: 257 QENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTL 316 Query: 207 QTE 209 + Sbjct: 317 ELA 319 Score = 27.9 bits (62), Expect = 0.035 Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 1/68 (1%) Query: 141 LERVIALQANRAQQLQADLSVARSQQAEVAQRQQSAREQTQALQVEKRA-AQVQLRDLQE 199 E N + ++ L S+ + Q + + ++K + L Sbjct: 257 QENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTL 316 Query: 200 QVRQLEKQ 207 ++ + E++ Sbjct: 317 ELAKNEER 324
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.4 bits (79), Expect = 7e-04 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 10/91 (10%) Query: 239 VVIAGMGMVIMTTVSFYMITAYTPTFGKEVLHLSSLDALVVTVCVGLSNLVWLPLSGALS 298 V + +G+ ++ V ++ + H L A L P+ GALS Sbjct: 14 VALDAVGIGLIMPVLPGLLRDLVHS-NDVTAHYGILLA-----LYALMQFACAPVLGALS 67 Query: 299 DRIGRRPVLIA----FTVLTLLSAYPAVLWL 325 DR GRRPVL+ V + A LW+ Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWV 98
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 47.6 bits (113), Expect = 2e-08 Identities = 18/105 (17%), Positives = 37/105 (35%) Query: 52 LGTNPADADALHLFGVLRHQQGQHAEAADLVGRAVELRPGDAALQLNLGNALKALGRLDE 111 + + L+ ++Q G++ +A + L D+ L LG +A+G+ D Sbjct: 29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88 Query: 112 AIERFRNALTLAPEFPLAHYNLGNAYAALQRHEDAVDAFGRALRL 156 AI + + + P ++ +A A L Sbjct: 89 AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 47.2 bits (112), Expect = 2e-08 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 3/105 (2%) Query: 25 MDSAFDRAYAAHRAGRLAEAEHGYRAALGTNPADADALHLFGVLRHQQGQHAEAADLVGR 84 ++ + A+ +++G+ +A ++A + D+ G R GQ+ A Sbjct: 36 LEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 95 Query: 85 AVELRPGDAALQLNLGNALKALGRLDEAIERFRNALTLA---PEF 126 + + + L G L EA A L EF Sbjct: 96 GAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140 Score = 46.8 bits (111), Expect = 4e-08 Identities = 20/83 (24%), Positives = 30/83 (36%) Query: 200 NLAMALNAMGRADDAIAHFQAAIAAQPRFVAAHFNLGNTFEALGRHGEAAAAFEAALALH 259 +LA G+ +DA FQA LG +A+G++ A ++ + Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 260 PPFPLALFGLANALCALGRQREA 282 P F A L G EA Sbjct: 101 IKEPRFPFHAAECLLQKGELAEA 123 Score = 43.4 bits (102), Expect = 5e-07 Identities = 20/105 (19%), Positives = 32/105 (30%) Query: 154 LRLTPDDASIHNNLGNALNALGRHDDALAAFHRALELRPGHAGAHNNLAMALNAMGRADD 213 ++ D +L G+++DA F L + L AMG+ D Sbjct: 29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88 Query: 214 AIAHFQAAIAAQPRFVAAHFNLGNTFEALGRHGEAAAAFEAALAL 258 AI + + F+ G EA + A L Sbjct: 89 AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 42.6 bits (100), Expect = 9e-07 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 10/127 (7%) Query: 112 AIERF-RNALTLA------PEFPLAHYNLGNAYAALQRHEDAVDAFGRALRLTPDDASIH 164 A+E F + T+A + Y+L ++EDA F L D+ Sbjct: 14 AMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFF 73 Query: 165 NNLGNALNALGRHDDALAAFHRALELRPGHAGAHNNLA---MALNAMGRADDAIAHFQAA 221 LG A+G++D A+ ++ + + A + + A+ + Q Sbjct: 74 LGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Query: 222 IAAQPRF 228 IA + F Sbjct: 134 IADKTEF 140 Score = 39.5 bits (92), Expect = 1e-05 Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 277 GRQREALPYYERAVGLDPSFSLAWLNLGNAHHALGAHEMALRAFDQALRVAPDLKLAQLH 336 G+ +A ++ LD S +L LG A+G +++A+ ++ + H Sbjct: 50 GKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFH 109 Query: 337 RAVTLLTLGD 346 A LL G+ Sbjct: 110 AAECLLQKGE 119
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.9 bits (103), Expect = 2e-06 Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 11/191 (5%) Query: 323 AVQESVHADAQEAAVVD---VTDEVALVPAATAEATVVT---EATEVADTHGEAKDGRKR 376 A SV ++ +E A VD V P+ T E E+ V +A + + Sbjct: 1005 ADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQ 1064 Query: 377 ARKSAAKKTGAKKGGEAKGGEAKGAGRQAAAKPDEAAHGGAKHGGDKHAQGMPAEATHRD 436 R+ A + AK +A + A Q+ ++ E K + T + Sbjct: 1065 NREVAKE---AKSNVKANTQTNEVA--QSGSETKETQTTETKETATVEKEEKAKVETEKT 1119 Query: 437 MEHREERHVAAPTAGEYGAPAAAAQPAHEAAPAAESTGEAAGETVAAKPKKPARKTAPRA 496 E + +P + A+PA E P + A ++PA++T+ Sbjct: 1120 QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNV 1179 Query: 497 RRPRKTATAAE 507 +P +T Sbjct: 1180 EQPVTESTTVN 1190
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 66.4 bits (162), Expect = 2e-14 Identities = 70/345 (20%), Positives = 113/345 (32%), Gaps = 57/345 (16%) Query: 24 AQSSVTLYGIVDTGIQYYNNAAGGGAVAGMPSLTGEVP---SRFGLRGVEDLGGGYRAFF 80 A + VTLYG + G++ + A GA A + S+ G +G EDLG G +A + Sbjct: 17 AMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKAIW 76 Query: 81 VLENGFAPNSGTLNYGGRLFGRQANVGIESPYGALTLGRQMNMSMRVLLNADVIGP---- 136 +E + RQ+ +G++ +G L +GR + VL + I P Sbjct: 77 QVEQ----KASIAGTDSGWGNRQSFIGLKGGFGKLRVGRLNS----VLKDTGDINPWDSK 128 Query: 137 ----SIHSMASFDSYLPNARSDNALGYLGRFGGVTLGGTYSTGRDDAGPAGPSATHCAGN 192 ++ +A ++ L + R D+ F G++ Y+ D+AG Sbjct: 129 SDYLGVNKIAEPEARLISVRYDSP-----EFAGLSGSVQYA-LNDNAGRHNS-------- 174 Query: 193 VAGDPVACRQYTMMVAYDAPQFGAAASY--------DVMHGGAGASAPLSSPGYTDTRTI 244 Y Y F GY + Sbjct: 175 --------ESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDNDALY 226 Query: 245 VDAYVKFGIAKLGAGWIRRNTAAAAHSQSDIFFAGGTVQATPALSFDAQALRYLLRGRFD 304 V+ AKL N+ + F TP +S+ A + Sbjct: 227 ASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGN----VTPRVSY-AHGFKGSFDATNY 281 Query: 305 SNL---FVARANYSLSKRTMVYTSVAYMTNSALGTSAVAAGGTVG 346 +N V A Y SKRT S ++ + V+ G VG Sbjct: 282 NNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVG 326
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 761 bits (1966), Expect = 0.0 Identities = 274/1102 (24%), Positives = 505/1102 (45%), Gaps = 95/1102 (8%) Query: 3 LSRPFITRPVATTLLALGVALAGLFAFIKLPVSPLPQVDFPTISVQASLPGASPETVATS 62 ++ FI RP+ +LA+ + +AG A ++LPV+ P + P +SV A+ PGA +TV + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTSPLERHLGSIADVSEMTSTST-VGNARIILQFGLNRDIDGAARDVQAAINAARADLPA 121 VT +E+++ I ++ M+STS G+ I L F D D A VQ + A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 SLKSNPTYRKVNPADSPIMIVSLTSET--SSPAKLYDAASTVLQQSLSQIDGIGQVSVSG 179 ++ + S +M+ S+ ++ + D ++ ++ +LS+++G+G V + G Sbjct: 121 EVQ-QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 SANPAVRVELEPHALFHYGIGLEDVRAALASANANSPKGAIEFGPK------HYQLYTND 233 + A+R+ L+ L Y + DV L N G + P + + Sbjct: 180 AQY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QASHASQYSDLVV-AYRNGAAVRLSDLSEVVDSVEDLRNLGLSNGKRAVLVILYRSPGAN 292 + + ++ + + +G+ VRL D++ V E+ + NGK A + + + GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 IIETIDRVRTALPQLTASLPADITVTPVLDRSTTIRASLKDTEHTLLIAISLVVMVVFLF 352 ++T ++ L +L P + V D + ++ S+ + TL AI LV +V++LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIVATGFVVDDAIVVLENITR 412 L+N RATLIP++AVP+ ++GTF + G+SI+ L++ +++A G +VDDAIVV+EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-ENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGIVGRLFREFALTLSLAI 471 + E+ P +A ++ ++ +++ L AVF+P+ GG G ++R+F++T+ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 AVSLAVSLTVTPMMCARLLREPHDAHEE--GRLGRFLERFFTRMQRGYERSLSWALRRPL 529 A+S+ V+L +TP +CA LL+ H E G + F Y S+ L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 530 LVLLILFATIGLNVYLYIIVPKGFFPQQDTGLMIGGIRADQSTSFQAMKQKFTEMMRIVQ 589 LLI + V L++ +P F P++D G+ + I+ + + ++ ++ Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 590 SN--PNVQSAAGFTG----GTQTNSGFMFVTLKDRTER---KLSADQVIQQLRRPLADVA 640 N NV+S G G N+G FV+LK ER + SA+ VI + + L + Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 641 GASTFLQAAQDIRVGGRQSNAQYQFT-LLGDSSADLYKWGP-LLTEALQKRSELTDVNSD 698 I G + ++ G L + LL A Q + L V + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 699 QQQGGLEAMVTIDRATAARLGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPKY 758 + + + +D+ A LG+ + I+ T+ A G V+ + + ++ K+ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 759 WQSPQMLNEVWISTSGGSANGSQSTNAAAGTFVATSAGTSSAGTAATSAAAIASDSARNQ 818 P+ ++++++ + A G V S A + Sbjct: 779 RMLPEDVDKLYVRS-------------ANGEMVPFS--------------AFTTSHWVYG 811 Query: 819 ALNSIASSGKSSASSGAAVSTSKSTMIPLSAIATFGPSTTPLSVNHQGLFVATTISFNLP 878 + +G S + S+ ++ + ++ LP Sbjct: 812 SPRLERYNGLPSMEIQGEAAPGTSSGDAMALME--------------------NLASKLP 851 Query: 879 PGVSLSQATQVIYQTMAQIGVPPTIVGSFQGTAQAFQQSLNNQPILILAALLAVYIVLGI 938 G+ + G + + S N P L+ + + V++ L Sbjct: 852 AGIGY----------------------DWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 939 LYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKKNAIMMVDFAI 998 LYES+ P++++ +P VG LLA LF + + ++G++ IG+ KNAI++V+FA Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 999 DQTRNGNKSSYDAIHEACLLRFRPIMMTTMAALLGALPLAFGHGDGAELRAPLGIAIAGG 1058 D K +A A +R RPI+MT++A +LG LPLA +G G+ + +GI + GG Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 1059 LIMSQVLTLYTTPVVYLYMDRL 1080 ++ + +L ++ PV ++ + R Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRC 1031 Score = 97.2 bits (242), Expect = 2e-22 Identities = 82/507 (16%), Positives = 169/507 (33%), Gaps = 33/507 (6%) Query: 2 NLSRPFITRPVATTLLALGVALAGLFAFIKLPVSPLPQVDFPTISVQASLP-GASPETVA 60 N + L+ + + F++LP S LP+ D LP GA+ E Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 TSVTSPLERHLGSIAD-------VSEMTSTSTVGNARIIL-QFGLNRDIDGAARDVQAAI 112 + + +L + V+ + + NA + + +G +A I Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 113 NAARADLPASLKSNPTYRKVNPADSPIMIVSLTSETS-----SPAKLYDAASTVLQQSLS 167 + A+ +L + E L A + +L + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 168 QIDGIGQVSVSGSAN-PAVRVELEPHALFHYGIGLEDVRAALASANANSPKGAIEFGPKH 226 + V +G + ++E++ G+ L D+ +++A + + Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 227 YQLYT---NDQASHASQYSDLVVAYRNGAAVRLSDLSEVVDSVEDLRNLGLSNGKRAVLV 283 +LY L V NG V S + V L NG ++ + Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHW-VYGSPRLERYNGLPSMEI 826 Query: 284 ILYRSPGANIIETIDRVRTALPQLTASLPADITVTPVLDRSTTIRASLKDTEHTLLIAIS 343 +PG + + + L + LPA I T + + + + ++ Sbjct: 827 QGEAAPGTSSGD----AMALMENLASKLPAGIGYD-----WTGMSYQERLSGNQAPALVA 877 Query: 344 LVVMVVFLFL----RNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIVATGFV 399 + +VVFL L +W + + VP+ I+G A L D ++ L+ G Sbjct: 878 ISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLS 937 Query: 400 VDDAIVVLENIT-RHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGIVGR 458 +AI+++E + GK ++A R +L S++ + LP+ + G Sbjct: 938 AKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSG 997 Query: 459 LFREFALTLSLAIAVSLAVSLTVTPMM 485 + + + + +++ P+ Sbjct: 998 AQNAVGIGVMGGMVSATLLAIFFVPVF 1024 Score = 61.4 bits (149), Expect = 2e-11 Identities = 27/168 (16%), Positives = 62/168 (36%), Gaps = 1/168 (0%) Query: 924 LILAALLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLI 983 L A +L +V+ + ++ + +P +G L F + + + G++L I Sbjct: 344 LFEAIMLVF-LVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAI 402 Query: 984 GIVKKNAIMMVDFAIDQTRNGNKSSYDAIHEACLLRFRPIMMTTMAALLGALPLAFGHGD 1043 G++ +AI++V+ +A ++ ++ M +P+AF G Sbjct: 403 GLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGS 462 Query: 1044 GAELRAPLGIAIAGGLIMSQVLTLYTTPVVYLYMDRLRVWGEKRRNRR 1091 + I I + +S ++ L TP + + + Sbjct: 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGG 510
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 810 bits (2093), Expect = 0.0 Identities = 286/1036 (27%), Positives = 496/1036 (47%), Gaps = 29/1036 (2%) Query: 4 SRLFILRPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQVQTFYPGASPEVMTSSV 63 + FI RP+ +L +M+AG +A+ LP+A P + P + V YPGA + + +V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 TAPLERQFGQMPSLNQMSSQS-SAGASVITLQFSLDLPLDIAEQEVQAAINAAGNLLPSD 122 T +E+ + +L MSS S SAG+ ITL F DIA+ +VQ + A LLP + Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 123 LPAPPIYAKVNPADAPVLTLAITSKTLPLTQ--VQDLTDTRLAMKISQIAGVGLVSLSGG 180 + I + + ++ S TQ + D + + +S++ GVG V L G Sbjct: 122 VQQQGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 NRPAVRIQANPTALAQYGMNLDDLRTTISNLNVNTPKGNFDGP------TRAYTINANDQ 234 A+RI + L +Y + D+ + N G G +I A + Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 235 LTSADQY-NSAVVAYKSGRPVMLTDVAKVVAGSENTKLGAWVNAEPAIILNVQRQPGANV 293 + +++ + G V L DVA+V G EN + A +N +PA L ++ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 IATVDAIKAQLPKLQETLPAALDVQVVTDRTTMIRAAVRDVQFELLLAVVLVVLVMYLFL 353 + T AIKA+L +LQ P + V D T ++ ++ +V L A++LV LVMYLFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 ANVYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTIATGFVVDDAIVMIENIARY 413 N+ AT+IP+++VP+ L+GT A++ G+S+N L++ + +A G +VDDAIV++EN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 VEEGHT-GLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIV 472 + E EA K QI ++ + + L AV IP+ F G G ++ +F+IT+ + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 ISAIVSLTLVPMMCAKLLRHSPPPESH---RFEARVHRVIDAVIARYGVALEWVLNRQGS 529 +S +V+L L P +CA LL+ F + D + Y ++ +L G Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 530 TLVVALLTLALTALLYVYIPKGFFPAQDTGVIQAITQAPQSISYGAMAERQQALAAEILK 589 L++ L +A +L++ +P F P +D GV + Q P + + + LK Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 590 D--PNVESLTSFIGVDGSNITLNSGRMLINLKARDHRS---ESSAQIIRDLQQRVANVTG 644 + NVES+ + G S N+G ++LK + R+ S+ +I + + + Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 645 ITLFMQSVQDLTIDSTVSPTQYQFMLTS---PNPDEFATWVPKLVTRLQKEPS-LADVAT 700 F+ I + T + F L D +L+ + P+ L V Sbjct: 660 --GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 701 DLQSNGQSVYIEIDRASAARFGITPATVDNALYDAFGQRIVSTIFTQSNQYRVILESEPK 760 + + +E+D+ A G++ + ++ + A G V+ + ++ ++++ K Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 761 EQHYAESLNDIYLPSAGGGQVPLSSIASFHERPSPLLIAHLSQFPSTTISFNLAPGASLG 820 + E ++ +Y+ SA G VP S+ + H + + PS I APG S G Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSG 837 Query: 821 EAVKAIGAAEKDIGLPGSFQTRFQGAALAFQASLSNQLFLILAAVITMYIVLGVLYESYI 880 +A+ + LP + G + + S + L+ + + +++ L LYES+ Sbjct: 838 DAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895 Query: 881 HPITILSTLPSAGVGALLALMITGHDLDIIGIIGIVLLIGIVKKNAIMMIDFALEAERVE 940 P++++ +P VG LLA + D+ ++G++ IG+ KNAI++++FA + E Sbjct: 896 IPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE 955 Query: 941 GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGAGAGSELRQPLGIAIAGGLIVSQV 1000 GK EA A +R RPILMT+LA +LG +PL + GAGS + +GI + GG++ + + Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATL 1015 Query: 1001 LTLFTTPVIYLGFDSL 1016 L +F PV ++ Sbjct: 1016 LAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.8 bits (119), Expect = 1e-08 Identities = 32/166 (19%), Positives = 62/166 (37%), Gaps = 28/166 (16%) Query: 73 PAAMANIPQPVS-----------------VATATQGEMPIVLSALGTVTPLANV-TVKTQ 114 PA + I PVS + G++ IV +A G +T +K Sbjct: 43 PAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPI 102 Query: 115 LSGYLQSVAFQEGQLVKKGDLLAQIDPRP-------YQVALETAEGTYARDAALLATARL 167 + ++ + +EG+ V+KGD+L ++ Q +L A R L + L Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 168 DLKRYQTLLSQ---DSIASQTVDTQASLVKQYEGTVKTDQAAIDSA 210 + L + +++ + V SL+K+ T + + + Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELN 208 Score = 35.2 bits (81), Expect = 6e-04 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 6/105 (5%) Query: 145 QVALETAEGTYARDAALLAT--ARLDLKRYQTLLSQDSIASQTVDTQASLVKQY-EGTVK 201 + A+ E Y L ++L+ + L +++ T + ++ + + T Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 202 TDQ--AAIDSAKLNLTYARITAPVSGRV-GLRQVDPGNYVTAGDT 243 + + + I APVS +V L+ G VT +T Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 30.3 bits (68), Expect = 0.008 Identities = 15/35 (42%), Positives = 22/35 (62%) Query: 57 SRITATLVSAGFLFQLPDSERFVLTASVLELSHGF 91 S+ T+ LVSAG+L +++ V TAS + L H F Sbjct: 314 SKRTSALVSAGWLQGGKGADKIVSTASAVVLRHKF 348
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.8 bits (67), Expect = 0.034 Identities = 46/261 (17%), Positives = 90/261 (34%), Gaps = 13/261 (4%) Query: 76 AIFILPFVLFSATSGQIADKYDKATLTRFVKTFEIALMLVGAAGF-VTHSATLLYLCTFM 134 A++ L + G ++D++ + R V +A V A +LY+ + Sbjct: 50 ALYALMQFACAPVLGALSDRFGR----RPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV 105 Query: 135 MGMHSTLFGPVKYSYLPQHLGEHELVGGNGLVEMGTFIAILIGTIIGGAAAGIEGSGERV 194 G+ + G V +Y+ E G + ++ G ++GG G Sbjct: 106 AGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFF 164 Query: 195 LAVSVVVIALAGRLVAQRVPPTPAPQPDLVINWNPFSETWRNLGLAKQNRTVFLSLLGIS 254 A ++ + +P NP + G+ TV +L+ + Sbjct: 165 AAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGM-----TVVAALMAVF 219 Query: 255 WL-WFVGATFLTSFFNFAKDVLSASPDVVTVLLATFSV-GIGLGSLLCERLSQRRVEIGL 312 ++ VG + F +D + + LA F + +++ ++ R E Sbjct: 220 FIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRA 279 Query: 313 VPLGSIGISVFAIELYFASRS 333 + LG I I L FA+R Sbjct: 280 LMLGMIADGTGYILLAFATRG 300
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 60.3 bits (146), Expect = 6e-12 Identities = 68/409 (16%), Positives = 144/409 (35%), Gaps = 78/409 (19%) Query: 34 LDRGTLAVASSAIRNDLGLSLSEMGLLLSAFSWSYALCQFPVGGLVDRIGPRRLLGVGLI 93 L+ L V+ I ND + + +AF ++++ G L D++G +RLL G+I Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 94 VWSLAQASGGIV-STFGWFIVARIVLGIGEAPQFPSAARVVSNWFPLRARGTPTGIFNAA 152 + G + S F I+AR + G G A VV+ + P RG G+ + Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 153 SPLGTALAPLLLAVLVASFNWRWAFVA---------------------------TGALGL 185 +G + P + ++ +W + + G + + Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILM 207 Query: 186 VVAVVWFALYRDPAR---------------AQLTAAERAYLDADAQTAVAMPKLTFADWR 230 V +V+F L+ + ++D + Sbjct: 208 SVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPF-------MI 260 Query: 231 SLFSHGTTWGMLIGFFGSVYLNWVYLTWLPGYLTMERHMSLIRTGFAASVPFLCGFVGSL 290 + G +G + GF ++ +P + +S G SV G + + Sbjct: 261 GVLCGGIIFGTVAGF----------VSMVPYMMKDVHQLSTAEIG---SVIIFPGTMSVI 307 Query: 291 VAGWLSDVVTRRSRSPVVSRRNAVVVAMLGM----VAFTIPAALVQSNTV--ALACISVV 344 + G++ + +V RR + V +G+ V+F + L+++ + + + V+ Sbjct: 308 IFGYIGGI--------LVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVL 359 Query: 345 IFLANAASACSWALATAAAPPSRIASLGAIQNFGGFIGGALAPILTGVI 393 L+ + S ++++ A + + NF F+ + G + Sbjct: 360 GGLSFTKTVISTIVSSSLKQQEAGAGMSLL-NFTSFLSEGTGIAIVGGL 407
>PF03627#PapG Length = 336 Score = 32.2 bits (73), Expect = 0.002 Identities = 10/20 (50%), Positives = 11/20 (55%) Query: 136 ARLPSDLPLGLYECPAPYRR 155 LP+DLPLG Y PY Sbjct: 158 VALPADLPLGDYSVTIPYTS 177
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 114 bits (286), Expect = 9e-33 Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 15/257 (5%) Query: 7 LEGKVALVTGASSGLGQRFAQVLSQAGAKVVLASRRVERLKELRAEIEAAGGAAHVVSLD 66 +EGK+A +TGA+ G+G+ A+ L+ GA + E+L+++ + ++A A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 67 VTDVQSIKAAIAHAETEAGTIDILVNNSGVSTMQKLVDVTPADFEFVFDTNTRGAFFVAQ 126 V D +I A E E G IDILVN +GV + ++ ++E F N+ G F ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 127 EVAKRMMMRANGNGKPPYRIINIASVAGLRVFPQIGLYAMSKSAVVQMTRAMALEWGRHG 186 V+K MM R +G+ I+ + S + YA SK+A V T+ + LE + Sbjct: 126 SVSKYMMDRRSGS------IVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 187 INVNAICPGYIDTEINHYLWETEQGQ---------KLQSILPRRRVGKPQDLDGLLLLLA 237 I N + PG +T++ LW E G ++ +P +++ KP D+ +L L Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 238 ADESQFINGSIISADDG 254 + ++ I + D G Sbjct: 240 SGQAGHITMHNLCVDGG 256
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 71.4 bits (175), Expect = 1e-14 Identities = 66/280 (23%), Positives = 101/280 (36%), Gaps = 82/280 (29%) Query: 478 VMGHVDHGKTSLLDHIRRAKVAAGEAG------------------GITQHIGAYHVETPR 519 V+ HVD GKT+L + + A E G GIT G + Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 520 GVITFLDTPGHEAFTAMRARGAKATDIVVLVVAADDGVMPQTKEAIAHAKAGGVPIVVAI 579 + +DTPGH F A R D +L+++A DGV QT+ + G+P + I Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 580 NKIDKPEANPDRVKQE----LVAEGVV-----------------PEEYG----------- 607 NKID+ + V Q+ L AE V+ E++ Sbjct: 128 NKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLE 187 Query: 608 ----GDSP-----------------FVPV---SAKTGVGIDDLLENVLLQAEVLELKAPI 643 G S PV SAK +GID+L+E + + + Sbjct: 188 KYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVI-----TNKFYSST 242 Query: 644 E---APAKGIVIEAKLDKGKGPVATILVQSGTLNRGDVVL 680 + G V + + + + +A I + SG L+ D V Sbjct: 243 HRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVR 282
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 133 bits (337), Expect = 2e-36 Identities = 85/396 (21%), Positives = 158/396 (39%), Gaps = 16/396 (4%) Query: 27 VFMNVLDTSIANVAIPTISGDLGVSSDQGTWVITSFAVANAISVPLTGWLTDRFGQVRLF 86 F +VL+ + NV++P I+ D WV T+F + +I + G L+D+ G RL Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 87 LASILLFVISSWMCGLAPT-LPFLLASRVLQGAVAGPMIPLSQSLLLSSYPRAKAPMALA 145 L I++ S + + + L+ +R +QGA A L ++ P+ A Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 146 LWSMTTLIAPVAGPILGGWISDNYSWPWIFYVNIPVGIAAALATWSIYRTRESTVRRAPI 205 L + GP +GG I+ W ++ IP+ I + + ++ + Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPM-ITIITVPFLMKLLKKEVRIKGHF 199 Query: 206 DGVGLALLVLWVGSLQIMLDKGKDLDWFASTTIIALALIAVISFAFFVIWELTAEHPVVD 265 D G+ L+ VG + ML F ++ I+ +++V+SF FV P VD Sbjct: 200 DIKGIILMS--VGIVFFML--------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 266 LSLFRMRNFTGGTIALAVGYGLYFGNLVLLPLWLQTQIGYTATDAG-LVMAPVGLFAILL 324 L + F G + + +G G + ++P ++ + + G +++ P + I+ Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 325 SPLTGKFLPRTDPRYIATAAFLTFALCFWMRSRYTTGVDEWSLTLPTLVQGIAMAGFFIP 384 + G + R P Y+ ++ F S + + V G ++ Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFTKTV 368 Query: 385 LVSITLSGLPGHRIPAASGLSNFVRIMCGGIGTSIF 420 + +I S L A L NF + G G +I Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIV 404
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 71.4 bits (175), Expect = 1e-15 Identities = 44/270 (16%), Positives = 85/270 (31%), Gaps = 28/270 (10%) Query: 94 ADSQVALQQAEANLAQTVRQVRGLFVNDDQYRAQVALRQSDLSKAQDDLRRRVAVAQTGA 153 + Q Q E NL + + + ++Y + +S L L + A+A+ Sbjct: 196 STWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSS-LLHKQAIAKHAV 254 Query: 154 VSQE--------EISHARDAVRAAQASVDAAQQQLASNRALTANTTIASHPNVMAAAAKV 205 + QE E+ + + ++ + +A+++ L N + + Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 206 RD----AYLANARNVLPAPVTGYVAKRSVQ-VGQRVSPGNPLMSVVPLNAV-WVDANFKE 259 +V+ APV+ V + V G V+ LM +VP + V A + Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQN 374 Query: 260 VQLKHMRIGQPVEL--TADIYGSSAVYHGKVVGFSAGTGSAFSLLPAQNATGNWIKVVQR 317 + + +GQ + A Y GKV + G V+ Sbjct: 375 KDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIIS 427 Query: 318 LPVRIEIDPKELEKHPLRIGLSMQVDVNIK 347 + + + M V IK Sbjct: 428 IEENCLST----GNKNIPLSSGMAVTAEIK 453 Score = 46.7 bits (111), Expect = 9e-08 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 21/161 (13%) Query: 56 VNGNVVQITPQITGTVIAVKADDTQTVKAGDPLVVLDPADSQVALQQAEANLAQT----- 110 +G +I P V + + ++V+ GD L+ L ++ + +++L Q Sbjct: 92 HSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQT 151 Query: 111 ----------VRQVRGLFVNDDQYRAQVA----LRQSDLSKAQDDLRRRVAVA--QTGAV 154 + ++ L + D+ Y V+ LR + L K Q + Sbjct: 152 RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211 Query: 155 SQEEISHARDAVRAAQASVDAAQQQLASNRALTANTTIASH 195 + E + + + +L +L IA H Sbjct: 212 KRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKH 252
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 293 bits (752), Expect = 1e-96 Identities = 134/482 (27%), Positives = 202/482 (41%), Gaps = 67/482 (13%) Query: 19 ADIVDRVARCMASFDVEVIRADNAEISPER-AALRPSLAIISVTMIE-TGAAFLRDWQA- 75 A I + + ++ +V NA AA L + V M + L + Sbjct: 13 AAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKA 72 Query: 76 NIGMPVVWVGA---------ARDHDASQY---PPDYSHILPLDFTCAELRGMIGKLVTQL 123 +PV+ + A A + A Y P D + ++ + + Sbjct: 73 RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP------KRRP 126 Query: 124 RAHAAETLQPSELVAHSESMQALLHEVDTFADCDTNVLLHGETGVGKERIAQLLHQKHSR 183 ++ LV S +MQ + + D +++ GE+G GKE +A+ LH + + Sbjct: 127 SKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD-YGK 185 Query: 184 YRNGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVVAHKGYFEQAAGGTLFLDEVGDLPL 243 RNG FV +N AIP L ES FGH KG+FTGA G FEQA GGTLFLDE+GD+P+ Sbjct: 186 RRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPM 245 Query: 244 YQQVKLLRVLEDGAVLRVGATSPIKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIEL 303 Q +LLRVL+ G VG +PI+ D R+VAA+NK L Q + GLFR DLYYRL V+ L Sbjct: 246 DAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPL 305 Query: 304 SIPSLEERGAVDKIALFKSFVAEVVGDERLAQLSDLPYWLADAVADS----YFPGNVREL 359 +P L +R D L + FV ++ + + +PGNVREL Sbjct: 306 RLPPLRDRAE-DIPDLVRHFV------QQAEKEGLDVKRFDQEALELMKAHPWPGNVREL 358 Query: 360 RNLAER-----------------------------VGVTVRQTGGWDAARLQRLVAHARN 390 NL R + A + + + + Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 391 SAQPVPVESAAEVFVDRSKWDMNERSRVIAALDANGWRRQDTALQLGISRKVLWEKMRKY 450 +P + + E ++AAL A + A LG++R L +K+R+ Sbjct: 419 FGDALPPSGLYDRVLAEM-----EYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473 Query: 451 QI 452 + Sbjct: 474 GV 475
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.0 bits (78), Expect = 4e-04 Identities = 10/112 (8%), Positives = 31/112 (27%), Gaps = 7/112 (6%) Query: 124 DETRAEAIYRDFSHQAERLAVNELRAAKLESQKAQTDR-------QIALTQERARRLQAD 176 AEA + + + R L + + Sbjct: 128 TALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187 Query: 177 ISIAREQQAAVVDRQKSVRNETAALQAQQAELQSQLRALQQQVRSLQREANA 228 S+ +EQ + +++ +A++ + +++ + R + + Sbjct: 188 TSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD 239
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.9 bits (168), Expect = 4e-16 Identities = 20/82 (24%), Positives = 33/82 (40%) Query: 20 PGNRQAGGTKARILDAAEDLFIEHGFEAMSMRQITSRAAVNLAAVNYHFGSKEALIHAML 79 ++A T+ ILD A LF + G + S+ +I A V A+ +HF K L + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 80 SRRLDQLNQERLGILDRFDAQL 101 + + L +F Sbjct: 64 ELSESNIGELELEYQAKFPGDP 85
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 67.9 bits (166), Expect = 1e-14 Identities = 74/312 (23%), Positives = 125/312 (40%), Gaps = 15/312 (4%) Query: 11 TIAAYLGWTLDAFDFFLMVFVLKDIAAEFASTIPAVA---FALTLTLAMRPIGALIFGRL 67 I LDA L++ VL + + + A L L M+ A + G L Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 68 ADRFGRRPTLMVNIACYSLLELASGFAPSLTALLVLRALFGIAMGGEWGVGSALTMETVP 127 +DRFGRRP L+V++A ++ AP L L + R + GI G V A + Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITD 125 Query: 128 THARGFVSGLLQAGYPSGYLLASVVFGLLYQYIGWRGMFMVGVLPALLVLYVRAHVPES- 186 R G + A + G + V+ GL+ + F L L L +PES Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESH 185 Query: 187 PAWKQMEKRPRPSLGATLQQNWKLTIYAIVLMTAF--NFFSHGTQDLYPTFLREQHHFDP 244 ++ +R + A+ + +T+ A ++ F L+ F ++ H+D Sbjct: 186 KGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDA 245 Query: 245 HTVSW-ITIVLNLGAIVGGLSFGAISERIGRRRAIFVAALIALPVLPLWAF-SSGPVA-- 300 T+ + L ++ + G ++ R+G RRA+ + + L AF + G +A Sbjct: 246 TTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFP 305 Query: 301 ----LAAGAFLM 308 LA+G M Sbjct: 306 IMVLLASGGIGM 317
>cloacin#Cloacin signature. Length = 551 Score = 45.1 bits (106), Expect = 1e-06 Identities = 24/64 (37%), Positives = 30/64 (46%) Query: 850 SGWCSGAPTAYEPGKGFAWSDAWTLYGDDEGGNGGNGGNGGGNGGGEGGNGGGNGGGEGG 909 SG +G PT G G + W+ + GG G+G + GG G G G GN GG G Sbjct: 17 SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSG 76 Query: 910 NGGG 913 GG Sbjct: 77 TGGN 80 Score = 32.8 bits (74), Expect = 0.007 Identities = 14/52 (26%), Positives = 19/52 (36%) Query: 876 GDDEGGNGGNGGNGGGNGGGEGGNGGGNGGGEGGNGGGDHPQYKEGTKYNAG 927 GD G N G G GG G G G G +G ++ + G+ Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH 55 Score = 31.6 bits (71), Expect = 0.015 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 14/61 (22%) Query: 867 AWSDAWTLYGDDEGGNGGNGGNGG--------------GNGGGEGGNGGGNGGGEGGNGG 912 A S + + G G G G + G G+G GG G GG GN G Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSG 72 Query: 913 G 913 G Sbjct: 73 G 73
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 128 bits (322), Expect = 6e-41 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 3/131 (2%) Query: 10 KRRGQQGFTLLELLVVLLIIALLAGYVGPKLFSQVDKAKVKSTQAQMKTLGDAVTQFRLD 69 Q+GFTLLE++VV++II +LA V P L +KA + + + L +A+ ++LD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 70 TGNYPTADEGLDALVVQPQGADG---WNGPYLAKAVPKDGWGRAYQWNVPGRDGEAEIVS 126 +YPT ++GL++LV P +N K +P D WG Y PG G +++S Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLS 122 Query: 127 LGRDGRVGGSG 137 G DG +G Sbjct: 123 AGPDGEMGTED 133
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 198 bits (504), Expect = 1e-61 Identities = 109/403 (27%), Positives = 196/403 (48%), Gaps = 16/403 (3%) Query: 1 MQAFRVRVL-ADGKIAQQTIEAASEMEVRARLAEKGGVVLEVRRDKRIGRRRAPKF---- 55 M + + L A GK + T EA S + R L E+G V L V ++ ++ Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 56 --------ALALFLQELSTLLDAGLVLFEALEALRDKADSGKDAKYVIDRLLAVMVEGQP 107 LAL ++L+TL+ A + L EAL+A+ +++ ++ ++ + + ++EG Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQ-LMAAVRSKVMEGHS 119 Query: 108 LSKALARQPAIFPPLLVATVESSEGSGQLPVVLKRYQQYEVRIEQVRKRVTGALIYPAVV 167 L+ A+ P F L A V + E SG L VL R Y + +Q+R R+ A+IYP V+ Sbjct: 120 LADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVL 179 Query: 168 IGVGIAILLFMAFFVIPRFAVVFESL-ATLPPTAHAMLWWANLLRENGMAVGLAVAASFV 226 V IA++ + V+P+ F + LP + ++ ++ +R G + LA+ A F+ Sbjct: 180 TVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFM 239 Query: 227 GAGLAIRSAAFKRAAQRLMWRAPKVRDVCALFALTRFYRTVGLLIAGGTPVIVALELSGK 286 + +R + + R + P + + R+ RT+ +L A P++ A+ +SG Sbjct: 240 AFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGD 299 Query: 287 VLP-EHFRARLAAALIDMRAGRPVAAVLAAHALTTSVAERLLRVGEQSGDLGGMCEHIAQ 345 V+ ++ R RL+ A +R G + L AL + ++ GE+SG+L M E A Sbjct: 300 VMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAAD 359 Query: 346 FHDGALDRAIEMLSKVFEPVLMLAVGATVGAVVLLLYMPIFEL 388 D + + +FEP+L++++ A V +VL + PI +L Sbjct: 360 NQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQL 402
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.9 bits (64), Expect = 0.010 Identities = 19/104 (18%), Positives = 45/104 (43%), Gaps = 4/104 (3%) Query: 42 DQLRDEVDGIESRIDERQRAIERERRRQKTMTPEQRRIERVLAEQRMSEKGSGLSVVDWI 101 +Q R E++ ++ + + + E E +R ++ E + +E +A++++S S + +D Sbjct: 154 EQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVE--IAQKKLSAAQSEVVKMD-- 209 Query: 102 EQAWTPQIALKSLTVDKAGREARIEGGAAELSHIYIFVDRLNDR 145 + T L S + + G EL+ L++ Sbjct: 210 GEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELDEL 253
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 27.3 bits (60), Expect = 0.028 Identities = 10/38 (26%), Positives = 11/38 (28%) Query: 45 ASLGAEPANDSPPPPVAEPEPEPPSLDEPIDAQPVAEP 82 EP PPP EPEP P + Sbjct: 51 TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVV 88 Score = 26.5 bits (58), Expect = 0.050 Identities = 15/34 (44%), Positives = 16/34 (47%) Query: 50 EPANDSPPPPVAEPEPEPPSLDEPIDAQPVAEPP 83 A PP PV EPEPEP + EP PV Sbjct: 58 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK 91
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 165 bits (418), Expect = 9e-45 Identities = 79/379 (20%), Positives = 161/379 (42%), Gaps = 41/379 (10%) Query: 266 RTFFLSHADAKSVMAALRQM---------------IKPKDVYV--DERVNAVVMRDTPET 308 + +L +A A ++ L + K++ + + NA+++ P+ Sbjct: 270 KVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDV 329 Query: 309 IQVAERVVMGLDIPQSEVTLDVQVLEVNMNDSLDLGVQ----YPGKIQFNALGGVEGGAL 364 + ERV+ LDI + +V ++ + EV D L+LG+Q G QF G A+ Sbjct: 330 MNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAI 389 Query: 365 TLGDLLRLNR-------------DRVGVSSESGGLALAIDLLQKQGKTKTLANPKIRVRN 411 + + + + G A+ + L K LA P I + Sbjct: 390 AGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLD 449 Query: 412 MEKANIKIGERVPIVT--TTNANGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVS 469 +A +G+ VP++T T + + +V + VG+ LKV+P+I+ + V +++ EVS Sbjct: 450 NMEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVS 509 Query: 470 SILTKETTKTGLVAYSLGTRNAETLMTAKNGETQILAGLVKRNESDSVAGLPGVSGLPVL 529 S+ ++ + + + TR + +GET ++ GL+ ++ SD+ +P + +PV+ Sbjct: 510 SVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVI 569 Query: 530 GRLFGSNGRSNERSEIVLLITPHIERNLDLPMSAVTTFLSGTESRVTTEALTLESAQAVP 589 G LF S + + ++L I P + R+ D S + +A + + + Sbjct: 570 GALFRSTSKKVSKRNLMLFIRPTVIRDRD-----EYRQASSGQYTAFNDAQSKQRGKENN 624 Query: 590 ARLPSSDGPDLDAPIEPAT 608 + + D ++ + A Sbjct: 625 DAMLNQDLLEIYPRQDTAA 643 Score = 32.6 bits (74), Expect = 0.008 Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 20/165 (12%) Query: 180 SLNFKQQPLANIFDVISRVSGVNFVFDRDVDTSHAATLF-AERTTAEDAINLL---LRTN 235 S +FK + + +S+ + D V + T+ + E L Sbjct: 31 SASFKGTDIQEFINTVSKNLNKTVIIDPSVRGT--ITVRSYDMLNEEQYYQFFLSVLDVY 88 Query: 236 QLEKKVLDRHTLLVYPSQPEKARNY-----------TEFAIRTFFLSHADAKSVMAALRQ 284 ++ L V S+ K E R L++ A+ + LRQ Sbjct: 89 GFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPLLRQ 148 Query: 285 MI---KPKDVYVDERVNAVVMRDTPETIQVAERVVMGLDIPQSEV 326 + V E N ++M I+ +V +D Sbjct: 149 LNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDRS 193
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 54.1 bits (130), Expect = 4e-12 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 15/113 (13%) Query: 1 MNGRRRARGFTLIELMVAMSLLALLATVALPLTDLVKRRSDEAELRRVLVVIRSALDAYK 60 M + RGFTL+E+MV + ++ +LA++ +P K ++D+ + +V + +ALD YK Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK 60 Query: 61 AAADDGRIERSVDASGYP---PDLRALVDGVEDKKSPDGAR-LYFLRKLPADP 109 +D YP L +LV+ ++++LPADP Sbjct: 61 -----------LDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADP 102
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 73.0 bits (179), Expect = 1e-19 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 20/130 (15%) Query: 9 RRARRAAGFTLIELLVVMAIIAALTAFVAPGYLKQSDRAKETVLRHNLNTLRQSIDDYRA 68 R + GFTL+E++VV+ II L + V P + ++A + ++ L ++D Y+ Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61 Query: 69 DHGRDPDT---LDALVEK-------------RYLRELPLDPLTGKRGSWQPQAGETGGIA 112 D+ P T L++LVE Y++ LP DP P GE G Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNP--GEHGAY- 118 Query: 113 DVKS-GAKGR 121 D+ S G G Sbjct: 119 DLLSAGPDGE 128
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 58.7 bits (142), Expect = 2e-12 Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Query: 20 LDKAGYDTQVRHDGDSFIELVRTQRVDVLLLDWDVPGKSGIEVMRWARESFADALPIIMM 79 L +AGYD ++ + + + D+++ D +P ++ +++ +++ D LP+++M Sbjct: 23 LSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKARPD-LPVLVM 81 Query: 80 TQHDGENDIVFGLNSGADDYLIKPLRERELVARV 113 + + + GA DYL KP EL+ + Sbjct: 82 SAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 107 bits (269), Expect = 3e-31 Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 3/177 (1%) Query: 1 MARKTREESLAIKHRILDAAELVLLEKGVAQTAMADLAEAAGMSRGAVYGHYRNKMEVCL 60 MARKT++E+ + ILD A + ++GV+ T++ ++A+AAG++RGA+Y H+++K ++ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 ALCDRAFARTSEGFDAVDSLPA---FATLRRAASHYLQQCGEPGSMQRVLVILYTKCEQS 117 + + + + E + + LR H L+ + ++ I++ KCE Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 118 EENGALQRRRMLLELQMLRITKALLRRAIAAGEIAADLDVHLAAVHLVSLLEGVFAS 174 E +Q+ + L L+ + L+ I A + ADL AA+ + + G+ + Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN 177
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.0 bits (96), Expect = 6e-06 Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 5/132 (3%) Query: 70 VRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAQGALAKAQAAAL---AASD 126 ++ IV +EG+ V++G VL ++ +A Q +L +A+ S Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 127 KRRRYDDLVRDHAVSERDHTEAVADDTRAKADVASAKAELAR--AQLQLDYATVTAPISG 184 + + R + + + Q +L+ A Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLT 218 Query: 185 RARRALVTEGAL 196 R E Sbjct: 219 VLARINRYENLS 230 Score = 34.4 bits (79), Expect = 8e-04 Identities = 14/101 (13%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Query: 103 LKAARDAAQGALAKAQAAALAASDKRRRYDDLVRDHAVSERDHTEAVADDTRAKADVASA 162 + L + ++ L+A ++ + L ++ + + + ++ Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKL---------RQTTDNIGLL 314 Query: 163 KAELARAQLQLDYATVTAPISGR-ARRALVTEGALVGQDQA 202 ELA+ + + + + AP+S + + + TEG +V + Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1082 bits (2799), Expect = 0.0 Identities = 525/1032 (50%), Positives = 714/1032 (69%), Gaps = 6/1032 (0%) Query: 1 MARFFIDRPVFAWVIALFIMLGGAFAIRALPVAQYPDIAPPVVSIYATYPGASAQVVEES 60 MA FFI RP+FAWV+A+ +M+ GA AI LPVAQYP IAPP VS+ A YPGA AQ V+++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTALIEREMNGAPGLLYTSATS-SAGAASLYLTFKQGVNADLAAVEVQNRLKTVEARLPE 119 VT +IE+ MNG L+Y S+TS SAG+ ++ LTF+ G + D+A V+VQN+L+ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 PVRRDGIQVEKAADNIQLVVSLTSDDGRMSAVQLGEYASANVVQALRRVDGVGKVQFWGA 179 V++ GI VEK++ + +V SD+ + + +Y ++NV L R++GVG VQ +GA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 EYAMRIWPDPVKLAGHGLTASDIASAVRAHNARVTVGDIGRSAVPDSAPIAATVFADAPL 239 +YAMRIW D L + LT D+ + ++ N ++ G +G + + A++ A Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 KTPADFGAIALRAQPDGSALHLRDVARIEFGGNDYNYPSYVNGKVATGMGIKLAPGSNAV 299 K P +FG + LR DGS + L+DVAR+E GG +YN + +NGK A G+GIKLA G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 STEKRVRATMDELSAYFPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQ 359 T K ++A + EL +FP G+K PY+T+ FV++S+++VV TL EA +LVFLVM+LF+Q Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENVERLM 419 N+RATLIPT+ VPV L GTF ++ A G+SIN LTMFGMVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 VEEGLAPYDATVKAMRQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSIGF 479 +E+ L P +AT K+M QI GA+VGI +VL++VF+PMAFFGG+ G IYRQF++++ ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCATLLKPVSGDHHE-KRGFFGWFNGFVARSTQRYATRVGAMLKKPLRW 538 S +AL LTPALCATLLKPVS +HHE K GFFGWFN S Y VG +L R+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 539 LVVYGALTAAAALMLTQLPSAFLPDEDQGNFMVMVIRPQGTPLAETMQSVREVESYIRRD 598 L++Y + A ++ +LPS+FLP+EDQG F+ M+ P G T + + +V Y ++ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 599 EPAAY--TFALGGFNLYGEGPNGGMIFVTLKNWKERKAARDHVQAIVARINERFAGTANT 656 E A F + GF+ G+ N GM FV+LK W+ER + +A++ R + Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 TVFAMNSPALPDLGSTSGFDFRLQNRGGLDYAAFSAAREQLLAAGGKDPA-LTDVMFAGT 715 V N PA+ +LG+ +GFDF L ++ GL + A + AR QLL + PA L V G Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 QDAPQLKLDIDRAKASALGVSMDEINTTLAVMFGSDYIGDFMHGTQVRRVIVQADGLHRL 775 +D Q KL++D+ KA ALGVS+ +IN T++ G Y+ DF+ +V+++ VQAD R+ Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 DPADVQKLRVRNAGGEMVPLAAFATLHWTLGPPQLTRYNGFPSFTINGSAAPGHSSGEAM 835 P DV KL VR+A GEMVP +AF T HW G P+L RYNG PS I G AAPG SSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 AAIERLAAKLPAGIGHAWSGQSFEERLSGAQAPMLFALSVLVVFLALAALYESWSIPFAV 895 A +E LA+KLPAGIG+ W+G S++ERLSG QAP L A+S +VVFL LAALYESWSIP +V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 MLVVPLGVIGAVLGVTLRAMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQR-MSLV 954 MLVVPLG++G +L TL ND+YF VGL+ TIGLSAKNAILIVE AKDL+ + +V Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 DAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQMAIGTGVLGGMITATVLAVFL 1014 +A L A R+RLRPI+MTSLAF +GVLPLA ++GA SGAQ A+G GV+GGM++AT+LA+F Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1015 VPLFFVIVGRLF 1026 VP+FFV++ R F Sbjct: 1021 VPVFFVVIRRCF 1032
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 33.2 bits (76), Expect = 0.001 Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 13/140 (9%) Query: 134 YVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDAKSPMTDQL----EVTDED-RDYE 188 +D +G L + P+ S K++ VL +QL +D DY Sbjct: 43 IEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYS 102 Query: 189 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMND 248 + L+ G ++ ++ A+ S+N AA L G A + A + +G N Sbjct: 103 PVSEKHLADG--MTVGELCAAAITMSDNSAANLLLATVGG-----PAGLTAFLRQIGDNV 155 Query: 249 THFE-NSTGLSSSNVSSARD 267 T + T L+ + ARD Sbjct: 156 TRLDRWETELNEALPGDARD 175
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.021 Identities = 14/44 (31%), Positives = 22/44 (50%) Query: 45 SMEVPSDVAGTVKEVKVKAGEKVSQGTIIAIVEAAATDAAPVKA 88 S E+ VKE+ VK GE V +G ++ + A +A +K Sbjct: 96 SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKT 139
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 7e-04 Identities = 15/37 (40%), Positives = 22/37 (59%) Query: 166 VPSPAAGVVKEIKVKVGDSVSEGTLIVLLDAAGAPAA 202 + +VKEI VK G+SV +G +++ L A GA A Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEAD 135 Score = 32.1 bits (73), Expect = 0.006 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 1/71 (1%) Query: 49 VPSPAGGTVKEVKVKVGDSVSEGSLIILLEG-GAAAQVNGAAAPAAAPAPAAAPAPAAPA 107 + VKE+ VK G+SV +G +++ L GA A + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 108 AAAPAAAPAAS 118 + P Sbjct: 159 SIELNKLPELK 169
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 112 bits (282), Expect = 3e-31 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 4/153 (2%) Query: 11 TVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQIACLILDVRMSGM 70 T+ V DDD A+R L L GY V+ S+A AG ++ DV M Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA----AGDGDLVVTDVVMPDE 60 Query: 71 SGLELQERLIADNAALPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAELRKLVERMLD 130 + +L R+ LP++ ++ A+ +KGA D++ KPFD EL ++ R L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 131 KARSESKSVQEQRAASERLSKLTAREQQVLERI 163 + + +++ L +A Q++ + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL 153
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.005 Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 25/75 (33%) Query: 305 LHAAWVQELGEMRDRIRAMRNGLVERLKASGVDRDFSFINAQRGMFSYSGLTSAQVDRLR 364 + EL EM A R E +K +F S++ DR R Sbjct: 639 IAGIVAYELSEMT----AFRRADAEAVK--------AFF-------------SSRKDRYR 673 Query: 365 EEFGIYAVGTGRICV 379 +G Y R V Sbjct: 674 GAYGRYVQDHPRQVV 688
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 103 bits (259), Expect = 8e-29 Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 11/261 (4%) Query: 2 AADLSGKTAVVTGAASGIGKEIALELAKAGAAVAIADLNQDGANAVADEINKAGGKAIGV 61 A + GK A +TGAA GIG+ +A LA GA +A D N + V + A Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 62 AMDVTNEEAVNSGIDKVAEAFGSVDILVSNAGIQIVNPIENYAFSDWKKMQAIHVDGAFL 121 DV + A++ ++ G +DILV+ AG+ I + + +W+ +++ G F Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 122 TTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNVR 181 +++ K+M D R G ++ +GS + +AY ++K + + L E A++N+R Sbjct: 123 ASRSVSKYM-MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 182 SHVVCPGFVRTPLVDKQIPEQAKELGVSEEEVIK----KVMLGNTVDGVFTTVQDVAQTV 237 ++V PG T D Q A E G E+VIK G + D+A V Sbjct: 182 CNIVSPGSTET---DMQWSLWADENG--AEQVIKGSLETFKTGIPL-KKLAKPSDIADAV 235 Query: 238 LFLSAFPSAALTGQSVVVSHG 258 LFL + + +T ++ V G Sbjct: 236 LFLVSGQAGHITMHNLCVDGG 256
>PF06872#EspG protein Length = 398 Score = 30.1 bits (67), Expect = 0.010 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 7/82 (8%) Query: 160 ALVLIDPSYEDKKDYART---VTCVTECLKRFATGCYAIWYPQVARVESQRFPEQLKRLQ 216 A +++D + + DY + +TC + LK G +W P+ ++ E Q+F L L+ Sbjct: 27 ASLVLDATIKINSDYKKPWNEMTCAEKLLKILTLG---LWNPKYSQDERQQFQGLLTVLE 83 Query: 217 PNNWLHLTL-TVSNPPADGLGL 237 P + H L V +DG L Sbjct: 84 PVSPAHNELGRVYAKFSDGSSL 105
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 27.8 bits (61), Expect = 0.010 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 50 GGLVLQTAPLSSEPIVEPAGMRTPAGQGPNSSVPLFVAPYINVPGWGAS 98 G +V A S EP+V G+ + +G+ P F AP + V GAS Sbjct: 274 GNVVFDRA--SGEPVVIDLGLHSRSGEQPKGFTESFKAPELGVGNLGAS 320
>cloacin#Cloacin signature. Length = 551 Score = 32.4 bits (73), Expect = 0.003 Identities = 19/65 (29%), Positives = 25/65 (38%) Query: 30 GGSGSLSKGTGGSGSGSGDTTASTGGTGNGTSGTSASTGGTGSTGSTGNGASGSSANGVG 89 GG L G G S + + G G+G+ G G+ G GN GS G Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Query: 90 QTLAA 94 +AA Sbjct: 82 SAVAA 86 Score = 32.4 bits (73), Expect = 0.003 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 6/109 (5%) Query: 32 SGSLSKGTGGSGSGSGDTTASTGGTGNGTSGTSASTGGTGSTGSTGNGASGSSANGVGQT 91 +G + G G+ G +S G SG+ GG G+ G + +G G Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Query: 92 LAASSNIVTAGGGAISGVGTAIGAQTLPGTNPATTQGLGAVVQDVGAAV 140 L+A + V G A+S G A ++ L A + D+ AA+ Sbjct: 81 LSAVAAPVAFGFPALSTPGAGGLAVSISA------GALSAAIADIMAAL 123 Score = 28.5 bits (63), Expect = 0.050 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 7/91 (7%) Query: 53 TGGTGNGTSGTSASTGGTGSTGSTGNGASGSSANGVGQTLAASSNIVTAGGGAISGVGTA 112 +GG G G + + ST G + G TG G G +++G G + + GGG+ SG+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPW----GGGSGSGIHWG 57 Query: 113 IGAQTLPG---TNPATTQGLGAVVQDVGAAV 140 G+ G N G G + V A V Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPV 88
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 33.0 bits (75), Expect = 0.001 Identities = 15/71 (21%), Positives = 21/71 (29%) Query: 33 LLPTQNPPAPISEALIEPVRETAGEPLTMPPVPAPTHPEEPEAPKKPHREVPRPKPVQRA 92 L P E ++EP E P P +P+ KP + +R Sbjct: 54 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 113 Query: 93 EPPAPPPPPPP 103 P P P Sbjct: 114 VKPVESRPASP 124 Score = 31.9 bits (72), Expect = 0.003 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 1/67 (1%) Query: 40 PAPISEALIEPVRETAGEPLTMPPVPAPTHPEEPEAPKKPHREVPRPKPVQRAEPPAPPP 99 PAP + V EP P EPE +P E P+ PV +P P Sbjct: 39 PAPAQPISVTMVTPADLEPPQAVQPPPEP-VVEPEPEPEPIPEPPKEAPVVIEKPKPKPK 97 Query: 100 PPPPPLV 106 P P P+ Sbjct: 98 PKPKPVK 104
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 56.0 bits (135), Expect = 1e-10 Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 6/144 (4%) Query: 255 VIAACIIVPQAIVAMLSPWVGRSSQRWGRRPILLLGFSALPVRALLFAGVSSPYLLVPVQ 314 ++ A + Q A P +G S R+GRRP+LL+ + V + A ++L + Sbjct: 47 ILLALYALMQFACA---PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGR 103 Query: 315 MLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGIGATLSTAVAGYVADHFGNT 374 ++ GI+ A V I AD+ G R G G G + G + F Sbjct: 104 IVAGITGATGAVAGAYI-ADITDGDERARH-FGFMSACFGFGMVAGPVLGGLMGG-FSPH 160 Query: 375 TSFFGLAAAGALAALLVWLAMPET 398 FF AA L L +PE+ Sbjct: 161 APFFAAAALNGLNFLTGCFLLPES 184
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.032 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 141 GVMVTLVRDSLTVMFLLGYLFYLNWRLTLIVAVILP 176 V+ TL + V ++ YLF N R TLI + +P Sbjct: 339 EVVKTLFEAIMLVFLVM-YLFLQNMRATLIPTIAVP 373
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 36.7 bits (84), Expect = 8e-04 Identities = 50/252 (19%), Positives = 84/252 (33%), Gaps = 20/252 (7%) Query: 897 SQPAASTPVSPAAVSSGASGSAFTATSSASATPSAALSSRVPDASAIGQPSMSTAAAQTA 956 + AA + AA + +A A A + R + A+ P+ + A A Sbjct: 206 TLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAM--PANGSVVATAA 263 Query: 957 TGGTAPAAAAGVAAFAASSSGTLAPTTPIAAASPTAFGGTPTSPSSALASVAATPTAT-- 1014 G A G A+ A + S +A + A++P+ S + + + T Sbjct: 264 GRGLIQVAQ-GAASLAQAISDAIAVLGRVLASAPSVMAVGFASLTYSSRTAEQWQDQTPD 322 Query: 1015 ----------APTTPPTSANPSA--SASPIVSVPGAASIDASTSTPPIAPTPAPQAQPFT 1062 A P S N +A AS V +P + +A +T ++ Sbjct: 323 SVRYALGMDAAKLGLPPSVNLNAVAKASGTVDLPMRLTNEARGNTTTLSVVSTDGVSVPK 382 Query: 1063 AQPAPAAAPSSWTMPGAAATPTTTGTTIPTATTAPLPTATLPAATLPPAAEPTALAEPST 1122 A P AA ++ T P+TT P T T P P++ + +P Sbjct: 383 AVPVRMAAYNATTGLYEVTVPSTTAEAPPLILTW---TPASPPGNQNPSSTTPVVPKPVP 439 Query: 1123 PAPDAPAAPERP 1134 A P + Sbjct: 440 VYEGATLTPVKA 451 Score = 33.2 bits (75), Expect = 0.009 Identities = 48/260 (18%), Positives = 90/260 (34%), Gaps = 14/260 (5%) Query: 797 AASAAASAVGASGPTTAPSSVSAPFAAAAPSAPSAPSATSA--TSAPPATSATATSSTGA 854 +AA +++ A+ A +A A +A A T A PA + ++ G Sbjct: 206 TLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGR 265 Query: 855 SGMPAAQPAATAPTVTASSQTASTVTASSAPASTGASFNAAASQPAASTPVSPAAVSSGA 914 + AQ AA+ + + +SAP+ F A+ + + + Sbjct: 266 GLIQVAQGAASLAQAISDAIAVLGRVLASAPSVMAVGF-ASLTYSSRTAEQWQDQTPDSV 324 Query: 915 SGSAFTATSSASATPSAALSSRVPDASAIGQPSMSTAAAQTATGGTAPAAAAGVAAFAAS 974 + + PS L++ + + P T A+ T + + GV+ A Sbjct: 325 RYALGMDAAKLGLPPSVNLNAVAKASGTVDLPMRLTNEARGNTTTLSVVSTDGVSVPKAV 384 Query: 975 SSGTLAPTTPIAAASPTAFGGTPTSPSSALASVAATPTATAPTTPPTSANPSASASPIVS 1034 A A+ + T S ++ + T P +PP + NPS++ Sbjct: 385 PVRMAAYN-----ATTGLYEVTVPSTTAEAPPLILT---WTPASPPGNQNPSSTTP---V 433 Query: 1035 VPGAASIDASTSTPPIAPTP 1054 VP + + P+ TP Sbjct: 434 VPKPVPVYEGATLTPVKATP 453
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 29.4 bits (65), Expect = 0.036 Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 2/58 (3%) Query: 428 PVTTTLAAVPSSKQPETTRATVAKRVRAKAPAATVAPARTPAAKAAPAAKSAGSTRAK 485 T + PS+ P K + T P P A P ++K Sbjct: 142 DNTPKVTDAPSTVLPTEKPTLFTKLTSEQ--LTTAQPDDAPGTPAQPLTPLVAEAQSK 197
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 73.9 bits (181), Expect = 2e-18 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 10/189 (5%) Query: 5 KIKRDPEGTRRRILMAAAEEFASGGLFGARVDQIARRAETNERMLYYYFGSKEQLFTAVL 64 K K++ + TR+ IL A F+ G+ + +IA+ A +Y++F K LF+ + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 65 EHAFSALTEAERVLDLDGVAPVEAVTR---LAHFIWDYYRDHPELLRLINNENLHEARYL 121 E + S + E E +V R + + LL I + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 122 HKSTR-IREMMSPIVAKLGNVLMRGQKAGLFRGDVDPLHFYVTLSGL------GYYIVSN 174 + R + ++ L +A + D+ + + G + Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183 Query: 175 RFTLAATLG 183 F L Sbjct: 184 SFDLKKEAR 192
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.9 bits (75), Expect = 0.002 Identities = 16/148 (10%), Positives = 42/148 (28%), Gaps = 14/148 (9%) Query: 181 QQQADAARERHDRRLARQRREREAAEARAAARR---AASASAAKAAPEAAEPGKQPDAPS 237 +AD + + AR + R +R+ +E Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 238 AAPADDADAKKRAIIAAALERARKKKEELSEQGTGPRNTERVSAAVQAQIDAAEARRK-- 295 ++ L++ R ++ + + E +S ++++D + Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARI---NRYENLSRVEKSRLDDFSSLLHKQ 247 Query: 296 -----RLAEQQAQRDAQAAAAGDENESD 318 + EQ+ + +A +S Sbjct: 248 AIAKHAVLEQENKY-VEAVNELRVYKSQ 274
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 111 bits (278), Expect = 1e-28 Identities = 76/398 (19%), Positives = 159/398 (39%), Gaps = 16/398 (4%) Query: 25 LAVLDGAIANVALPTIARDLHASDAASIWIVNAYQLAVTITLLPLASLGERVGYRRIYIA 84 +VL+ + NV+LP IA D + A++ W+ A+ L +I L +++G +R+ + Sbjct: 25 FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLF 84 Query: 85 GLALFTAASLGCALAGS-LPMLAVMRVIQGFGAAGIMSVNAALVRMIYPSSMLGRGLSIN 143 G+ + S+ + S +L + R IQG GAA ++ +V P G+ + Sbjct: 85 GIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLI 144 Query: 144 AMVVALSSAIGPTVASAILSFASWPWLFAVNVPIGIAAVLGSVRALPANPLHDAPYDFAS 203 +VA+ +GP + I + W +L + + I I V ++ L +D Sbjct: 145 GSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKEVRIKGHFDIKG 203 Query: 204 ALM--NACVFGLLITAVDGLGHGERHAYVAAELAVAFVVGYFFVKRQLSQPAPLLPVDLM 261 ++ VF +L T + L V+ + FVK P + L Sbjct: 204 IILMSVGIVFFMLFTTSYSISF----------LIVSVLSFLIFVKHIRKVTDPFVDPGLG 253 Query: 262 RIPMFALSIYTSMASFTSQMLAFVALPFWLQNSLGFSQVETG-LYMTPWPLVIVFAAPLA 320 + F + + F + +P+ +++ S E G + + P + ++ + Sbjct: 254 KNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIG 313 Query: 321 GVLSDRYSAGILGGIGLALFAAGLLSLATIGAHPGTVDIVWRMALCGAGFGLFQSPNNRA 380 G+L DR + IG+ + L+ + + + + + G ++ + Sbjct: 314 GILVDRRGPLYVLNIGVTFLSVSFLTASFL-LETTSWFMTIIIVFVLGGLSFTKTVISTI 372 Query: 381 MLSSAPRERSGGAGGMLSTARLTGQTLGAALVALIFGL 418 + SS ++ +G +L+ + G A+V + + Sbjct: 373 VSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.0 bits (65), Expect = 0.029 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 92 YRSDLTRFDRQEYAGYLRVNAM---LAKQLAALLQPDDLIWVHDYHLLPFAHCLRELGVK 148 YR L ++ +E + + ++ + + D I L A+ L E+ Sbjct: 99 YRDYLIKYSDRELVQFFENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSA 158 Query: 149 NPIGFFLHIPFPSPDML 165 IGF+L++PF D++ Sbjct: 159 FKIGFYLYLPFVVVDLV 175
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 131 bits (332), Expect = 2e-38 Identities = 75/311 (24%), Positives = 128/311 (41%), Gaps = 37/311 (11%) Query: 18 LLAASAAALSIAA-----PACAQAATVNVVAAENFYGDVASQIGGRHVAVTSILSNPDQD 72 LL +A+ + A + VVA + D+ I G + + SI+ QD Sbjct: 7 LLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVP-IGQD 65 Query: 73 PHLFEASPKTARALQHAQVVIYNGAN----YDPWMSKLLGASKQAKRA-TIVVADLVGK- 126 PH +E P+ + A ++ YNG N + W +KL+ +K+ + V+D V Sbjct: 66 PHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVI 125 Query: 127 -------KAGDNPHVWYDPATMPAAARAIAAEFGRADPANKADYDANLQKFVASL----K 175 K ++PH W + A+ IA + DP NK Y+ NL+++ L K Sbjct: 126 YLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDK 185 Query: 176 PVDDKVAALRAQYKGVPVTATEPVFGYMSDAIGLDMRNQRFQLATMNDTEASAQDVAAFE 235 DK + A+ K + VT +E F Y S A G+ + + E + + + Sbjct: 186 ESKDKFNKIPAEKKLI-VT-SEGAFKYFSKAYGV---PSAYIWEINTEEEGTPEQIKTLV 240 Query: 236 NDLRKKQVRVLIYNSQAEAPMTKRLLKIARDGGVP------SVSVTETQPAGKTFQQWMT 289 LR+ +V L S + K + ++D +P + S+ E G ++ M Sbjct: 241 EKLRQTKVPSLFVESSVDDRPMKTV---SQDTNIPIYAQIFTDSIAEQGKEGDSYYSMMK 297 Query: 290 GQLDALAAALS 300 LD +A L+ Sbjct: 298 YNLDKIAEGLA 308
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.013 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 2 SPTPHALALDRVTLELGGRTILRDVSFSIEPG---EFVGVL-GPNGAGKTTLMRAVLGLV 57 +P + R +G ++ V+ +EPG ++ VL G G GK+TL+ ++GL Sbjct: 561 TPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLD 620 Query: 58 PVSGGTLSVG 67 S +G Sbjct: 621 FFSDTHFDIG 630
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1267 bits (3279), Expect = 0.0 Identities = 676/1035 (65%), Positives = 823/1035 (79%), Gaps = 2/1035 (0%) Query: 1 MAKFFIDRPIFAWVIAIILMLAGVAAIFTLPISQYPTIAPPSIQITANYPGASAKTVEDT 60 MA FFI RPIFAWV+AIILM+AG AI LP++QYPTIAPP++ ++ANYPGA A+TV+DT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQNKLSLATPVLPQ 120 VTQVIEQ M+G+DN +YMSSTSD +G+ TITLTF GT+ DIAQVQVQNKL LATP+LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 VVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANFVASHVKDPISRLNGVGTVTLFGS 180 VQQ G+SV KSSSS+L+V F S++ + D++++VAS+VKD +SRLNGVG V LFG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWLDPTRLTNYGLTPVDVSSAIAAQNVQIAGGQIGGTPAKPGTVLQATITESTLL 240 QYAMRIWLD L Y LTPVDV + + QN QIA GQ+GGTPA PG L A+I T Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTPEQFGNILLKVNQDGSQVRLKDVSKIELGGENYNFDTKYNGQPTAALGIQLATNANAL 300 + PE+FG + L+VN DGS VRLKDV+++ELGGENYN + NG+P A LGI+LAT ANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 ATAKAVRAKIDELAPFFPHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQ 360 TAKA++AK+ EL PFFP G+ V YPYDTTPFV+LSI EVVKTL E I+LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NLRATIIPTIAVPVVLLGTFAIMSMVGFSINTLSMFGLVLAIGLLVDDAIVVVENVERVM 420 N+RAT+IPTIAVPVVLLGTFAI++ G+SINTL+MFG+VLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AEEGLSPKEATRKAMGQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVL 480 E+ L PKEAT K+M QI GALVG+A+VLSAVF+P+AF GGS GAIYRQFS+TIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALILTPALCATILKPIPQGHHEEKKGFFGWFNRTFNNSREKYHVGVHHVIKRSGRW 540 SVLVALILTPALCAT+LKP+ HHE K GFFGWFN TF++S Y V ++ +GR+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 LIIYLVVIVAVGLLFVRLPKSFLPDEDQGLMFVIVQTPSGSTQETTARTLANISDYLLKD 600 L+IY +++ + +LF+RLP SFLP+EDQG+ ++Q P+G+TQE T + L ++DY LK+ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 601 EKEIVESAFTVNGFSFAGRGQNSGLVFVRLKDYSQRQHANQKVQALIGRMFGRYAGYKDA 660 EK VES FTVNGFSF+G+ QN+G+ FV LK + +R +A+I R +D Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 661 MVIPFNPPSIPELGTAAGFDFELTDNAGLGHNALMAARNQLLGMAAKDP-TLQGVRPNGL 719 VIPFN P+I ELGTA GFDFEL D AGLGH+AL ARNQLLGMAA+ P +L VRPNGL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 720 NDTPQYKVDIDREKANALGVTAEAIDQTFSIAWASKYVNNFLDTDGRIKKVYVQSDAPFR 779 DT Q+K+++D+EKA ALGV+ I+QT S A YVN+F+D GR+KK+YVQ+DA FR Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID-RGRVKKLYVQADAKFR 779 Query: 780 MTPEDLNVWYVRNGSGGMVPFGAFATGHWTYGSPKLERYNGVSAMEIQGQAAPGKSTGQA 839 M PED++ YVR+ +G MVPF AF T HW YGSP+LERYNG+ +MEIQG+AAPG S+G A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 840 MTAMEGLAKKLPVGIGYSWTGLSFQEIQSGSQAPVLYAISILVVFLCLAALYESWSIPFS 899 M ME LA KLP GIGY WTG+S+QE SG+QAP L AIS +VVFLCLAALYESWSIP S Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 900 VIMVVPLGVVGALLAATMRGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQMTEKMGP 959 V++VVPLG+VG LLAAT+ +NDV+F VGLLTT+GLSAKNAILIVEFA++L E G Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 960 IEAALEAARLRLRPILMTSLAFILGVMPLAISNGAGSASQHAIGTGVIGGMITATFLAIF 1019 +EA L A R+RLRPILMTSLAFILGV+PLAISNGAGS +Q+A+G GV+GGM++AT LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1020 MIPMFFVKIRAIFSG 1034 +P+FFV IR F G Sbjct: 1020 FVPVFFVVIRRCFKG 1034 Score = 71.8 bits (176), Expect = 1e-14 Identities = 54/324 (16%), Positives = 113/324 (34%), Gaps = 15/324 (4%) Query: 724 QYKVDIDREKANALGVTAEAIDQTFS---IAWASKYVNNFLDTDGRIKKVYVQSDAPFRM 780 ++ +D + N +T + A+ + G+ + + F+ Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK- 241 Query: 781 TPEDLNVWYVR-NGSGGMVPFGAFATGHWTYGSPKLE---RYNGVSAMEIQGQAAPGKST 836 PE+ +R N G +V A G R NG A + + A G + Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARV--ELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 837 ----GQAMTAMEGLAKKLPVGIGYSWTGLSFQEIQSGSQAPVLYAI-SILVVFLCLAALY 891 + L P G+ + + +Q V +I++VFL + Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 892 ESWSIPFSVIMVVPLGVVGALLAATMRGLENDVFFQVGLLTTVGLSAKNAILIVEFAREL 951 ++ + VP+ ++G G + G++ +GL +AI++VE + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 952 QMTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAISNGAGSASQHAIGTGVIGGMI 1011 M +K+ P EA ++ ++ ++ +P+A G+ A ++ M Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 1012 TATFLAIFMIPMFFVKIRAIFSGE 1035 + +A+ + P + S E Sbjct: 480 LSVLVALILTPALCATLLKPVSAE 503
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.2 bits (94), Expect = 1e-05 Identities = 40/215 (18%), Positives = 70/215 (32%), Gaps = 34/215 (15%) Query: 100 AQLNSAKATLAKAQANLVTQNALVARYKVLVAANAVSKQEYDNAVATQ-GQAAADVAAGK 158 + A L ++ L + + K + Q + N + + Q ++ Sbjct: 259 NKYVEAVNELRVYKSQLEQIESEILSAK---EEYQLVTQLFKNEILDKLRQTTDNIGLLT 315 Query: 159 AAVDTAQINLGYTDVVSPITGRV-GISQVTPGAYVQASQATLMSTVQQLDPVYVD-LTQS 216 + + + + +P++ +V + T G V ++ TLM V + D + V L Q+ Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALVQN 374 Query: 217 SL-----EGLKLRQDVQSGRLKTSGPGAAKVSLILEDGKTYSDAGKLQFSDVTVDQTTGS 271 G V++ G KV I D DQ G Sbjct: 375 KDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNI--------------NLDAIEDQRLGL 420 Query: 272 VT--IRAV------FPNPGRVLLPGMFVRARIEEG 298 V I ++ N L GM V A I+ G Sbjct: 421 VFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTG 455 Score = 29.4 bits (66), Expect = 0.028 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Query: 63 AQVRARVDGIVLR-REFTEGGDVKAGQRLYKIDP 95 + +RA V V + + TEGG V + L I P Sbjct: 328 SVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVP 361
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 117 bits (294), Expect = 6e-35 Identities = 78/208 (37%), Positives = 115/208 (55%) Query: 1 MVRRTKEEALETRNRILDAAEHVFFEKGVSHTSLADIAQHAGVTRGAIYWHFANKSELFD 60 M R+TK+EA ETR ILD A +F ++GVS TSL +IA+ AGVTRGAIYWHF +KS+LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AMFDRVFLPIDELKRMPHDAPGGNPLDTIRKILIWCLLGVQRDSQLRRVFSILFMKCEYV 120 +++ I EL+ G+PL +R+ILI L + + R + I+F KCE+V Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 121 ADMEPLLQRNRAGMSEALHAIDADLAVAVRLKLLPERLDTWRATLMLHTLVSGFVRDMLM 180 +M + Q R E+ I+ L + K+LP L T RA +++ +SG + + L Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 181 LPDEIDAEQHAEKLVDGCFDMLRYSPAM 208 P D ++ A V +M P + Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTL 208
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 41.5 bits (97), Expect = 1e-06 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 12/128 (9%) Query: 9 ASRRALIVIDVQNEYVTGNLPIEYPPIDTSLANIGRAIDAAHAVGVPVIVV-----QHVA 63 +R L++ D+Q Y P+ ANI + + +G+PV+ Q+ Sbjct: 28 PNRAVLLIHDMQ-NYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNPD 86 Query: 64 PAG--APIFAPGTDGVALHPVVADR----PYAHLIVKAQASAFAGTDLAAWLDAHGIDTL 117 + PG + + ++ K + SAF T+L + G D L Sbjct: 87 DRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQL 146 Query: 118 SVAGYMTH 125 + G H Sbjct: 147 IITGIYAH 154
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 72.0 bits (176), Expect = 6e-16 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 26/157 (16%) Query: 125 LGSGFIVSADGYILTNAHVIDGANVVTVKLTDKR-----------EYKA-KVVGSDKQSD 172 + SG +V +LTN HV+D + L + A ++ + D Sbjct: 103 IASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGD 161 Query: 173 VAVLKIDA--------SGLPTVKIGDPGQSKVGQWVVAIGSPYGFDNTVTSGIISAKSRA 224 +A++K + + + +++V Q + G P +K + Sbjct: 162 LAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMW---ESKGKI 218 Query: 225 LPDENYTPFIQTDVPVNPGNSGGPLFNLQGEVIGINS 261 + +Q D+ GNSG P+FN + EVIGI+ Sbjct: 219 TYLKGE--AMQYDLSTTGGNSGSPVFNEKNEVIGIHW 253
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 748 bits (1932), Expect = 0.0 Identities = 267/893 (29%), Positives = 401/893 (44%), Gaps = 84/893 (9%) Query: 20 EADGATALAYNFDSRLLLGTPLGVANIERFNRTHAVDPGRYQVDLYVNDRFVSRRDITFR 79 ++ F+ R L P VA++ RF + PG Y+VD+Y+N+ +++ RD+TF Sbjct: 38 AQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFN 97 Query: 80 NTDDGA-LYPCLSDALLTSAGVLLRDVADARLPHAAAGQAAPDGTQPSPEPTPDHADALP 138 D + PCL+ A L S G+ V+ L A Sbjct: 98 TGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDA----------------------- 134 Query: 139 ADAPTAFCGPLTKRVPGAQTTFDLTRLRLDITVPQFEMRVAPRGAVDPASLDAGEAAAYV 198 C PLT + A D+ + RL++T+PQ M RG + P D G A + Sbjct: 135 -------CVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLL 187 Query: 199 NYDASYYTS-SAYGVRANSVYTGLNAGVNVGLWRVRQQSSFTYNGGTGNSIS--RWNNIR 255 NY+ S + + G ++ Y L +G+N+G WR+R ++++YN +S S +W +I Sbjct: 188 NYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHIN 247 Query: 256 TYAERPLIGMRSQLTIGQSFTSGSLFSTVGYTGVRLESDDRMLPDSMRGYAPVVNGVAQT 315 T+ ER +I +RS+LT+G +T G +F + + G +L SDD MLPDS RG+APV++G+A+ Sbjct: 248 TWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARG 307 Query: 316 NARVVVNQNGHVIYQTTVAPGPFRIADLNPTSYQGDIDVEVHEANGQVSRFTVPFSAVPN 375 A+V + QNG+ IY +TV PGPF I D+ GD+ V + EA+G FTVP+S+VP Sbjct: 308 TAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPL 367 Query: 376 SMRPGLSHYSVTLGQVRQIEG--SHARFADLTYQRGLTNSLTANGAVRVSLDYQSVLAGA 433 R G + YS+T G+ R RF T GL T G +++ Y++ G Sbjct: 368 LQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGI 427 Query: 434 VLGT-RIGAFGWNTTWSHARNAQGGWLNGWMSAITYSHTFTPTQTTFSLAGYRYSTKGYR 492 +GA + T +++ +G Y+ + + T L GYRYST GY Sbjct: 428 GKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYF 487 Query: 493 EFIDALSAREAYRRGETWA-------------SSTYQQRDQFTLNVNQDFGKYGALSLSA 539 F D +R ET + Y +R + L V Q G+ L LS Sbjct: 488 NFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSG 547 Query: 540 TTSSYYESRPHDTQVQLSYNNHYHSISYNLSFVRQKTATVVAPGSGPMQNLLPGYGRAGA 599 + +Y+ + D Q Q N + I++ LS+ K A + G Sbjct: 548 SHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNA-----------------WQKGR 590 Query: 600 DTRTSNVLMLTVSIPLG--------SGPRTASLSGSVSHGNDQGTSYQASLSGIADRAQT 651 D L L V+IP S R AS S S+SH + + A + G Sbjct: 591 DQM----LALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNN 646 Query: 652 LSYGLSLS---GETRNGARTYSGNLQKNLSMITAGASYSNGDHFWQVGATARGAIVAHRG 708 LSY + G N T L A YS+ D Q+ G ++AH Sbjct: 647 LSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHAN 706 Query: 709 GVTFGPYLGDTFGIVEAKGARGATVRSGMGARVDRFGYAIVPSLTPYRYTDVALETQGID 768 GVT G L DT +V+A GA+ A V + G R D GYA++P T YR VAL+T + Sbjct: 707 GVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLA 766 Query: 769 RDTELIGNQVRVAPYAGSAVLLKFATLTGHAVLIQGARADGERLPLGANVLDGKGTSIGV 828 + +L V P G+ V +F G +L+ + + LP GA V S G+ Sbjct: 767 DNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMT-LTHNNKPLPFGAMVTSESSQSSGI 825 Query: 829 VGQGGLAYARVPSAHGTVRVRWGKRREDQCAMRYDLPAQSATKAPIVRIRAQC 881 V G Y G V+V+WG+ C Y LP +S + + ++ A+C Sbjct: 826 VADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQ-QQLLTQLSAEC 877
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 28.0 bits (62), Expect = 0.028 Identities = 43/180 (23%), Positives = 61/180 (33%), Gaps = 13/180 (7%) Query: 24 MKKNLLVLMLAAAPVFAFAQSSNTIQFQGEVTDQTCAVTVNGNASSPTVLLPTVSTADLA 83 MKK+L+ L LAA PV A A + + V +G S AD Sbjct: 1 MKKSLIALTLAALPVAAMADVTLYGAIKAGVQTYRSVEHTDGKVSKVET---GSEIADFG 57 Query: 84 TAGGTAGETHFTLGLSGCTAPTQTARAINT-VFVGNQVTTNGNLGNTGT--ATNVALQLL 140 + G G+ GL Q A T GN+ + G G GT A ++ L Sbjct: 58 SKIGFKGQEDLGNGLKAVWQLEQGASVAGTNTGWGNKQSFVGLKGGFGTIRAGSLNSPLK 117 Query: 141 DPANATTPFNLSGASGYAAPGLSLAVGDTSASYDFAVRYITENGSATAGSVLGSVQYAIN 200 + + + + L ++ +VRY S GSVQYA Sbjct: 118 NTGANVNAWE---SGKFTGNVLEISGMAQREHRYLSVRY----DSPEFAGFSGSVQYAPK 170
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.1 bits (143), Expect = 4e-11 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 4/147 (2%) Query: 581 ILVIDDHRTNLAVLDRQIRATGCVPVLAETGRQALESFSTGRFDLVLMDVDLGDIDGFTL 640 ILV DD VL++ + G + + G DLV+ DV + D + F L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 641 TQRFRDLEAGAGTHTPIVSISASSEPDHHERALACGMDGLLDKPIRADVLRTVVSLWCDL 700 R + A P++ +SA + +A G L KP L ++ Sbjct: 66 LPRIKK----ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 701 DLRQQSPAPTPTQGAANLASTYAALLQ 727 R+ S +Q L AA+ + Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQE 148
>cloacin#Cloacin signature. Length = 551 Score = 42.0 bits (98), Expect = 6e-07 Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 109 GGRGGAGGGGGGSDEGGYGGGYG-GGGGGGRGGEQMERGGGGGGGRAGGAPRGGAAGGGQ 167 GG G G GGG SD G+ GGG G G G G GG G + G GG Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Query: 168 SRPSAPAGGGF 178 S +AP GF Sbjct: 82 SAVAAPVAFGF 92 Score = 30.5 bits (68), Expect = 0.004 Identities = 27/80 (33%), Positives = 29/80 (36%), Gaps = 9/80 (11%) Query: 107 MLGGRGGAGGGGGGSDEG-------GYGGGYGGGGGGGRGGEQMERGGGGGGG--RAGGA 157 M GG G G S G G G G G G G E GGG G G GG+ Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 158 PRGGAAGGGQSRPSAPAGGG 177 G G G S + GG Sbjct: 61 GHGNGGGNGNSGGGSGTGGN 80
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 86.8 bits (215), Expect = 7e-21 Identities = 76/369 (20%), Positives = 141/369 (38%), Gaps = 33/369 (8%) Query: 17 RATTSLAAIFALRMLGLFMIMPVFSVYAKT-IPGGDNVLLVGIALGAYGVTQSLFYIFYG 75 R + + AL +G+ +IMPV + + D GI L Y + Q G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 76 WASDKFGRKPVIATGLVIFALGSFVAAFAHDITWIIVGRVIQGM-GAVSSAVLAFIADLT 134 SD+FGR+PV+ L A+ + A A + + +GR++ G+ GA + A+IAD+T Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 135 SEQNRTKAMAMVGGSIGVSFAVAIVGAPI--VFHWVGMSGLFTIVGVLSILAIGVVVWIV 192 R + + G + G + + F L+ L +++ Sbjct: 125 DGDERARHFGFMSACFGFGM---VAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 193 PDAAKPVHVPAPFAEVLHNGELLRLNFGVLVLHATQTALFLVVPRLLVDGGLPVAAHWKV 252 P++ K P E L+ R G+ V+ A + V ++ G AA W + Sbjct: 182 PESHKGERRPLR-REALNPLASFRWARGMTVV-----AALMAVFFIMQLVGQVPAALWVI 235 Query: 253 Y---------------LPVMGL--AFVMMVPAIIVAEKRGKMKPVLLGGILAILIGQLLL 295 + L G+ + + VA + G+ + ++L G++A G +LL Sbjct: 236 FGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML-GMIADGTGYILL 294 Query: 296 GSAPHTILIVAAILFVYFLGFNILEASQPSLVSKLAPGSRKGAATGVYNTTQSIGLALGG 355 A + + V I + +++S+ R+G G S+ +G Sbjct: 295 AFATRGWMAF--PIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGP 352 Query: 356 IVGGWLLKH 364 ++ + Sbjct: 353 LLFTAIYAA 361
>YERSINIAYOPE#Yersinia virulence determinant YopE protein signature. Length = 219 Score = 28.2 bits (62), Expect = 0.040 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 3/96 (3%) Query: 224 SGTVTDASGRILSGQTVEAFWNSL--RHAKPLTFGLNCALGAALMRPYIAELAKLCDTYV 281 S +V + SGR +S QT + + N+L R P L + L + + + Sbjct: 20 SSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFI-QRMF 78 Query: 282 SCYPNAGLPNPMSDTGFDETPDVTSGLLKEFAQAGL 317 S + + P +P S +K+ A L Sbjct: 79 SEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETL 114
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.9 bits (77), Expect = 9e-04 Identities = 26/152 (17%), Positives = 41/152 (26%), Gaps = 18/152 (11%) Query: 77 GQPVPQAAQPAPPNTAPGQAANQTQGGLLPEPQIVEVPPSGNANGS---NTTASNNATSG 133 Q V P N + + + VPP A S T A N+ Sbjct: 989 NQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQES 1048 Query: 134 NGVAVAPKPADNTPP-------------PKKTQQAQQQQQGGEDDLARFAAQKQAQQAAA 180 V + A T TQ + Q G E + K+ Sbjct: 1049 KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEK 1108 Query: 181 QKQQQQQLAANTPKPAPSATSATSAAAAKPPT 212 +++ + + + P TS S + T Sbjct: 1109 EEKAKVETEKT--QEVPKVTSQVSPKQEQSET 1138 Score = 29.6 bits (66), Expect = 0.019 Identities = 34/179 (18%), Positives = 54/179 (30%), Gaps = 21/179 (11%) Query: 50 VAPPPTDTGASQPQQFDPNRALQGKTPGQPVPQAAQPAPPNTAPGQAANQTQGGLLPEPQ 109 V PP T + + N + KT + A + N + A + + + Q Sbjct: 1025 VPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQN---REVAKEAKSNVKANTQ 1081 Query: 110 IVEVPPSGNANGSNTTASNNATSG-----------NGVAVAPKPADNTPPPKKTQQAQQQ 158 EV SG+ T T+ PK P ++ + Q Sbjct: 1082 TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 159 QQGGEDDLARFAAQKQAQQAAAQKQQQQQLAANTPKPAPSATSATSAAAAKPPTANDAN 217 Q A A + + Q Q A+T +PA +S + T N N Sbjct: 1142 Q-------AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGN 1193 Score = 28.5 bits (63), Expect = 0.045 Identities = 28/174 (16%), Positives = 51/174 (29%), Gaps = 6/174 (3%) Query: 51 APPPTDTGASQPQQFDPNRALQGKTPGQPVPQAAQPAPPNTAPGQAANQTQGGLLPEPQI 110 P + A P N + PVP A P T A N Q E Sbjct: 997 ITTPNNIQADVPSV-PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNE 1055 Query: 111 VEVPPSGNANGSNTTASNN----ATSGNGVA-VAPKPADNTPPPKKTQQAQQQQQGGEDD 165 + + N + + T N VA + + K ++++ + + Sbjct: 1056 QDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVE 1115 Query: 166 LARFAAQKQAQQAAAQKQQQQQLAANTPKPAPSATSATSAAAAKPPTANDANTG 219 + + + KQ+Q + +PA + + T A+T Sbjct: 1116 TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 73.2 bits (179), Expect = 2e-17 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 2/184 (1%) Query: 7 VFITGASSGLGLAMAEEYARQGATLALVARRTDALDAFARRFPKLS--VSVYSADVRDAD 64 FITGA+ G+G A+A A QGA +A V + L+ + + ADVRD+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 65 ALATAAASFIAAHGCPDVVIANAGISQGAVTGQGDLATFRDVMDINYYGMVATFEPFVGP 124 A+ A G D+++ AG+ + + + +N G+ Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 125 MTAARHGTLVGVASVAGVRGLPGSGAYSASKSAAIKYLEALRVELRPAGVGVVTIAPGYI 184 M R G++V V S AY++SK+AA+ + + L +EL + ++PG Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 185 RTPM 188 T M Sbjct: 191 ETDM 194
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 29.3 bits (65), Expect = 0.049 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 16/95 (16%) Query: 217 DALIRYDVNPTYWGTKPKVDRLIYAITPDASVRMQK------VKAGECQIALSPKPQDVL 270 +A IRY VN GT P IY + P S+ + K +KA E Q++ P + Sbjct: 390 NANIRY-VNT---GTAP-----IYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYY 440 Query: 271 AAKGESALKVVQTPAFMTAFVALN-TQKKPLDNEK 304 +K + + + F + + +N Q L+ K Sbjct: 441 PSKNLAPIALNAQDDFSSTPITMNYNQFLELEKTK 475
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.3 bits (63), Expect = 0.021 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 110 YVQQGLMPVTAGLVAASAVLISEASNRTAIQWGITAACAVL-AWRTRIHPLWLLAAGALI 168 Y GL+ T GL A +A+LI E + + G A L A R R+ P+ + + ++ Sbjct: 925 YFMVGLL-TTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFIL 983 Query: 169 GL 170 G+ Sbjct: 984 GV 985
>FLAGELLIN#Flagellin signature. Length = 507 Score = 46.2 bits (109), Expect = 2e-07 Identities = 56/390 (14%), Positives = 121/390 (31%), Gaps = 7/390 (1%) Query: 15 QMNDQQAQLAQLYQQIASGVSLQTPADNPVGAAQAVQLSMTSATLSQYATNQTAALASLQ 74 +N Q+ L+ ++++SG+ + + D+ G A A + + L+Q + N ++ Q Sbjct: 16 NLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQ 75 Query: 75 AEDQALQSVSGVLTGVQTLVVRAGDGSLADSDRSALATQLQGYRDQLMTLANSNDGAGNY 134 + AL ++ L V+ L V+A +G+ +DSD ++ ++Q +++ ++N G Sbjct: 76 TTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVK 135 Query: 135 LFAGLNNSSAPFTSSPNGSVSY------VGDSGTRQVQIGDSSSVAQGDTGSAVFMSVPS 188 + + N ++ +++ V G + GD S+ Sbjct: 136 VLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGY 195 Query: 189 LGSAPVPSAGAANTGTGTITAVTVTTPSAATNGHQFSIAFGGTPAAPTYTVTDNSAKPPT 248 A + + +G + T + T A T D + Sbjct: 196 DTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKS 255 Query: 249 TTPAQAYTAGASIALGGGMTVAVSGTPAAGDTFAVTPGPQASGGADIFSTLDSMISALKT 308 T A A GG G +G + + + Sbjct: 256 TAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTK-TGNDGNGKVSTTINGEKVTLTVAD 314 Query: 309 PVTGNPVAAAALSNALMTGSIKVGNTMRNVTTIQASVGGREQEVKAMQAVNQTASLQTTS 368 G AA + V N + + +++A AV + + Sbjct: 315 ITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNG 374 Query: 369 NLTDLTSTNMTTTISQYLQVQNALTGAQKA 398 + T++ + Sbjct: 375 AEYTANAAGDKVTLAGKTMFIDKTASGVST 404
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 218 bits (557), Expect = 3e-65 Identities = 151/444 (34%), Positives = 236/444 (53%), Gaps = 15/444 (3%) Query: 3 NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYMPQGVNTV 62 ++L+N +SGLNAA L T NIS+ GY+ + + A+A+ + G++ GV Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 63 TVQRQYSQYLSDQLNSAQSQGGALSTWYSLVAQLNNYVGSPTAGISTAITGYFTGLQNVA 122 VQR+Y ++++QL +AQ+Q L+ Y +++++N + + T+ ++T + +FT LQ + Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 123 NNASDPSVRQTAISNAQVLADQLKAAGQQYDALRQSVNTQLTSTVSQINTYTSQIAQLNQ 182 +NA DP+ RQ I ++ L +Q K Q + VN + ++V QIN Y QIA LN Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 183 QIA--AASSQGQPPNQLMDQRDLAVSNLSSLAGVQV-VRNDSGYSVFLAGGQPLVVADKS 239 QI+ G PN L+DQRD VS L+ + GV+V V++ Y++ +A G LV + Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240 Query: 240 YQLATVTSPSDPSELTVVSQGIAGANPPGPNQALPDTSLSGGTLGGLLAFRSQTLDPAQA 299 QLA V S +DPS TV N +P+ L+ G+LGG+L FRSQ LD + Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAG-----NIEIPEKLLNTGSLGGILTFRSQDLDQTRN 295 Query: 300 QLGALATSFAAQVNGQNALGIDLSGKPGGNLFAVANPAVYSNQGNTGTASLSVSFANAAQ 359 LG LA +FA N Q+ G D +G G + FA+ PAV N N G ++ + +A+ Sbjct: 296 TLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASA 355 Query: 360 PTTSDYTLSYDGTNYTLTDRASGSVVGQSTSMPASIGGLAFS----FASGSMNAGDQFTV 415 +DY +S+D + +T AS + T P + G +AF +G+ D FT+ Sbjct: 356 VLATDYKISFDNNQWQVTRLASNTT---FTVTPDANGKVAFDGLELTFTGTPAVNDSFTL 412 Query: 416 LPTRGALNGFGLATTSGSAIAAAS 439 P A+ + T + IA AS Sbjct: 413 KPVSDAIVNMDVLITDEAKIAMAS 436 Score = 86.5 bits (214), Expect = 7e-20 Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 23/166 (13%) Query: 521 TITSTTQPAPAGVMNGVTVTLSGAPSDGDSFTIGPYAGGT-------------------- 560 T T T +G+ +T +G P+ DSFT+ P + Sbjct: 380 TFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEED 439 Query: 561 ---SDGSNALALSQLVTAKSLGGGTTTLTGAYAKYVNAIGNTASQLKSSSAAQTSLVGQI 617 SD N AL L + GG + AYA V+ IGN + LK+SSA Q ++V Q+ Sbjct: 440 AGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQL 499 Query: 618 TTAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTAATLFQTVLGL 663 + QQS+SGVN +EE NL ++QQ Y ANA+V+QTA +F ++ + Sbjct: 500 SNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 219 bits (558), Expect = 9e-72 Identities = 127/319 (39%), Positives = 174/319 (54%), Gaps = 41/319 (12%) Query: 16 ALDVQGFDALRAQARQSPQAGAKAVAGQFDAMFTQMMLKSMRDATPDGGLLDSHTSKMYT 75 A D Q + L+A+A + P A + VA Q + MF QMMLKSMRDA P GL S +++YT Sbjct: 12 AWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDGLFSSEHTRLYT 71 Query: 76 SMLDQQLAQQMSK-RGIGVADALMKQLMRNAGQGGGTAADVGAAGLGAAGLGAAGAGTSG 134 SM DQQ+AQQM+ +G+G+A+ ++KQ+ Q Sbjct: 72 SMYDQQIAQQMTAGKGLGLAEMMVKQM--TPEQ------------------------PLP 105 Query: 135 NEGSLAAMNAMARAYANAANNGGLAGARGYSAGSALTPPLKGASGVQ----DADAFVDRL 190 E + AA N L S L + D+ AF+ +L Sbjct: 106 EESTPAAPMKFPLETVVRYQNQAL---------SQLVQKAVPRNYDDSLPGDSKAFLAQL 156 Query: 191 AAPAQAASASTGIPARFIVGQAALESGWGKREIRASDGSTSYNVFGIKANKGWTGRTVSA 250 + PAQ AS +G+P I+ QAALESGWG+R+IR +G SYN+FG+KA+ W G Sbjct: 157 SLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEI 216 Query: 251 LTTEYVNGTPRRVVAKFRAYDSYEHAMTDYANLLKNNPRYAGVLSASRSVEGFAHGMQKA 310 TTEY NG ++V AKFR Y SY A++DY LL NPRYA V +A+ + E A +Q A Sbjct: 217 TTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASA-EQGAQALQDA 275 Query: 311 GYATDPNYAKKLISIMQQI 329 GYATDP+YA+KL +++QQ+ Sbjct: 276 GYATDPHYARKLTNMIQQM 294
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 63.7 bits (154), Expect = 1e-15 Identities = 44/140 (31%), Positives = 73/140 (52%) Query: 1 MAHGFPLQLLLDRAQEDLDTATKQLGTAQRDRTAAAEQLDALLRYRDEYHARFSQSAQHG 60 MA L L D A+++++ A + LG +R A EQL L+ Y++EY + G Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60 Query: 61 MPAGNWRNFQAFIDTLDAAIAQQRTVLAAAELRIDEARPNWQQKKRTVGSYETLQARGVA 120 + + W N+Q FI TL+ AI Q R L ++D A +W++KK+ + +++TLQ R Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120 Query: 121 QETQRAAKREQRDADEHAAK 140 + +Q+ DE A + Sbjct: 121 AALLAENRLDQKKMDEFAQR 140
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 66.4 bits (161), Expect = 4e-14 Identities = 83/326 (25%), Positives = 119/326 (36%), Gaps = 6/326 (1%) Query: 92 TDDANATPNADAAALAAAAAVQAQLQARVNDAAPAGAAADTAATAAQTTAVSGQPDATAA 151 T D + T A AA A L + AA A G+P + Sbjct: 9 TADVDTTTLPGGKASDAAQDFLALLSEALAGETTTDKAAPQLLVATDKPTTKGEPLISDI 68 Query: 152 LTNHASKDAAAEPALPASGREALQAALAKLTGGAGAIAMPATGTAAATAATAPASTTSAS 211 +++ + Q+ LT A + Sbjct: 69 VSDAQQANLLIPVDETPPVINDEQSTSTPLTTAQTMALAAVADKNTTKDEKADDLNEDVT 128 Query: 212 AAAAPLTPKVPTFDRTLADAKGALAPQPT------PTQATAQALQAGAAGQPAAHALAAT 265 A+ + L +P FD T PT + Q A P A T Sbjct: 129 ASLSALFAMLPGFDNTPKVTDAPSTVLPTEKPTLFTKLTSEQLTTAQPDDAPGTPAQPLT 188 Query: 266 EEAASPAADASVAAAATAAAAAQANLQASPAASSVAAANAHVLAPHVGTADWTDALSQKV 325 A + A V + + AA + L + A VL+ +G+ +W +LSQ + Sbjct: 189 PLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEWQQSLSQHI 248 Query: 326 VFLSNAHQQSAELTLNPPDLGPLQVVLRVADNHAHALFVSQHAQVRDAVEAALPKLREAM 385 + QQSAEL L+P DLG +Q+ L+V DN A VS H VR A+EAALP LR + Sbjct: 249 SLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPVLRTQL 308 Query: 386 EAGGLGLGSATVSDGGFASQQQNPQQ 411 G+ LG + +S F+ QQQ Q Sbjct: 309 AESGIQLGQSNISGESFSGQQQAASQ 334
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.012 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 49 TPKNILMIGPTGVGKTEIAR---RLAKLADAPFVKI 81 T +++ G +G GK +AR K + PFV I Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 1e-23 Identities = 30/127 (23%), Positives = 61/127 (48%) Query: 1 MSENNFLVIDDNEVFAGTLARGLERRGYAVQQAHDKEAALRLAAGGKFQFITVDLHLGED 60 M+ LV DD+ L + L R GY V+ + R A G + D+ + ++ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKEGADNYLAKPANIESILAALQTNAS 120 + L+ + +PD +LV++ + TA++A ++GA +YL KP ++ ++ + + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 EVQADEA 127 E + + Sbjct: 121 EPKRRPS 127 Score = 44.4 bits (105), Expect = 7e-08 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 3/101 (2%) Query: 75 DARILVLTGYASIATAVQAVKEGADNYLAKPANIESILAALQTNASEVQADEALENPVVL 134 I+ + I + L+ +E + + + L Sbjct: 375 TREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGL---YDR 431 Query: 135 SVDRLEWEHIQRVLAENNNNISATARALNMHRRTLQRKLAK 175 + +E+ I L N A L ++R TL++K+ + Sbjct: 432 VLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 43.3 bits (102), Expect = 6e-07 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 6/99 (6%) Query: 225 IPVISPIGFGEDGLSYNINADLVAGKLATVLNAEKLLMMTNIPGVM----DKDGNLLTDL 280 +PVI G G+ I+ DL KLA +NA+ +++T++ G + L ++ Sbjct: 197 VPVILEDG-EIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREV 255 Query: 281 SAREIDALFEDGT-ISGGMLPKISSALDAAKSGVKSVHI 318 E+ +E+G +G M PK+ +A+ + G + I Sbjct: 256 KVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAII 294 Score = 36.7 bits (85), Expect = 9e-05 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 10/60 (16%) Query: 76 GKTVVIKYGGNAMTEERLKQGF----------ARDVILLKLVGINPVIVHGGGPQIDQAL 125 GK VVI GGNA+ + K + AR + + G VI HG GPQ+ L Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 45.8 bits (108), Expect = 2e-08 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 15/154 (9%) Query: 16 EKITTAALAARLDVSEAALYRHFASKAKMYEGLIEFIEQALFGLVNQIVAKEPNGVLQA- 74 + +A V+ A+Y HF K+ ++ + E E + L + AK P L Sbjct: 30 SSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVL 89 Query: 75 RTIALTMLNFTAKNPGMTRVL----TGEALIGEDERLTERVNQLLDRIEATVKQCLRVAR 130 R I + +L T ++ +GE + + L ++Q L+ Sbjct: 90 REILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCI 149 Query: 131 TEANAPQDGAAPFTLPADYDPAARASLLVSYVIG 164 LPAD A ++ Y+ G Sbjct: 150 EAKM----------LPADLMTRRAAIIMRGYISG 173
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 504 bits (1300), Expect = 0.0 Identities = 247/348 (70%), Positives = 294/348 (84%), Gaps = 2/348 (0%) Query: 1 MFGFLRSYFSNDLAIDLGTANTLIYMRGKGIVLDEPSVVSIRQEGGPNGKKTIQAVGKEA 60 M R FSNDL+IDLGTANTLIY++G+GIVL+EPSVV+IRQ+ K++ AVG +A Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRA-GSPKSVAAVGHDA 59 Query: 61 KQMLGKVPGNIEAIRPMKDGVIADFTVTEQMIKQFIKTAHESRMFSPSPRIIICVPCGST 120 KQMLG+ PGNI AIRPMKDGVIADF VTE+M++ FIK H + PSPR+++CVP G+T Sbjct: 60 KQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGAT 119 Query: 121 QVERRAIKEAAHGAGASQVYLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVGVISLG 180 QVERRAI+E+A GAGA +V+LIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEV VISL Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN 179 Query: 181 GIVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGSAFPGSEVKEMEVKGR 240 G+VY SVR+GGD+FDEAI+NY+RRNYG LIGE TAE IK EIGSA+PG EV+E+EV+GR Sbjct: 180 GVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGR 239 Query: 241 NLSEGIPRSFTISSNEILEALTDPLNQIVSSVKIALEQTPPELGADIAERGMMLTGGGAL 300 NL+EG+PR FT++SNEILEAL +PL IVS+V +ALEQ PPEL +DI+ERGM+LTGGGAL Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299 Query: 301 LRDLDRLLAEETGLPVLVAEDPLTCVVRGSGMALERMDKL-GSIFSYE 347 LR+LDRLL EETG+PV+VAEDPLTCV RG G ALE +D G +FS E Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.009 Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 5/79 (6%) Query: 276 QNDVPPRPAEPEPAADKKGKKGAKAAAKGE-KAEKAEKADANAKPAAAAAPGAKP----A 330 N+V +E + + K+ A + + K E + + + + + Sbjct: 1082 TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 331 PAAPAAPAQPAAAAAKPAA 349 A PA P +P + Sbjct: 1142 QAEPARENDPTVNIKEPQS 1160
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 29.9 bits (66), Expect = 0.047 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 639 QNPNNEAAAVAAAASATEPVSAPVVGDASKPAAVAAGFTALPQPVVPTAASAASAA--DA 696 + P A + A+A ++ +A+K AAVA G ++ V A S A D+ Sbjct: 54 RPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDS 113 Query: 697 ASAPDASSAAQPSDASAAAPMAAS 720 A A+S AQ + A + S Sbjct: 114 AVTYGAASTAQKDGVAIGARASTS 137
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 37.1 bits (86), Expect = 6e-05 Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 34/171 (19%) Query: 87 RALDAGARTLMFPCIETADEAAHAVRLTRFPSPDSPDGLRGVAGMVRAAAFGMRRDYLQT 146 RA G +MFP I T +E LR +++ + + + Sbjct: 380 RASTYGNLKVMFPMIATLEE------------------LRQAKAIMQEEKDKLLSEGVDV 421 Query: 147 ANAQIAVIVQIESARGIDEVERIAATPGVDCLYVGPADLA----------ASLGHLGDSR 196 ++ I V + +E A VD +G DL + +L Sbjct: 422 SD-SIEVGIMVEIPSTAVAANLFA--KEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPY 478 Query: 197 HPDVETAMARVLAAGKQAGVAVGI---FASDTAIARQYREAGYRMITLSAD 244 HP + + V+ A G VG+ A D G ++SA Sbjct: 479 HPAILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSAT 529