>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 26.7 bits (59), Expect = 0.036 Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 29 LGILGLFIVRSNSLSDYALGLVMGVTIGSYALSIYYFAAL 68 L ++ + I + + + +V GV G+Y+ S+Y + Sbjct: 266 LALVPMLIWGGDVIRGFVFAMVWGVFTGTYS-SVYVAKNI 304
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 498 bits (1285), Expect = e-179 Identities = 201/399 (50%), Positives = 267/399 (66%), Gaps = 6/399 (1%) Query: 3 KTIAINAGSSSLKWQLYEMPEEVVLAKGLIERIGLRDSVSTVKFADRSESQTLDIADHVQ 62 K + IN GSSSLK+QL E + VLAKGL ERIG+ DS+ T D+ DH Sbjct: 2 KILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDHKD 61 Query: 63 AVKILLDDLI--RFDIIKSYDEITGVGHRVVAGGEYFKESSLVDEYALAKIEELSALAPL 120 A+K++LD L+ + +IK EI VGHRVV GGEYF S L+ + L I + LAPL Sbjct: 62 AIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAPL 121 Query: 121 HNPGAASGIRAFKELLPDITSVAVFDTAFHTSMPEVAYRYPVPNRYYTDYQVRKYGAHGT 180 HNP GI+A +++PD+ VAVFDTAFH +MP+ AY YP+P YYT Y++RKYG HGT Sbjct: 122 HNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGT 181 Query: 181 SHQYVSQEAAKLLGKPIEETKIITAHVGNGVSITAVDGGKSVDTSMGLTPLGGVMMGTRT 240 SH+YVSQ AA++L KPIE KIIT H+GNG SI AV GKS+DTSMG TPL G+ MGTR+ Sbjct: 182 SHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTRS 241 Query: 241 GDLDPAIIPFIIDREPDMADAERIRHVFNKESGLLGISEKSSDMRDIIAGK-EAGDEKCT 299 G +DP+II +++++E AE + ++ NK+SG+ GIS SSD RD+ + GD++ Sbjct: 242 GSIDPSIISYLMEKEN--ISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQ 299 Query: 300 LAYDLYVDRLRKYIAQYFGVMNGADAIVFTAGIGENSADVRASVLDGLTWFGIEVDPEKN 359 LA +++ R++K I Y M G D IVFTAGIGEN ++R +LDGL + G ++D EKN Sbjct: 300 LALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKN 359 Query: 360 -VFGRVGDITTADSAVKVFVIPTDEELVIARDVERLKTK 397 V G I+TADS V V V+PT+EE +IA+D E++ Sbjct: 360 KVRGEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIVES 398
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 51.0 bits (122), Expect = 2e-11 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 8/99 (8%) Query: 5 LKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAEL 64 ++ + K R FTL+E++VV++II +L L VPNL K+ + + + +++ ++ Sbjct: 1 MRATD--KQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDM 58 Query: 65 YEMKNNKTAS----LAALVSEGQITQKQADSYN-DYYAK 98 Y++ N+ + L +LV E A +YN + Y K Sbjct: 59 YKLDNHHYPTTNQGLESLV-EAPTLPPLAANYNKEGYIK 96
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 86.4 bits (214), Expect = 2e-21 Identities = 61/266 (22%), Positives = 122/266 (45%), Gaps = 11/266 (4%) Query: 32 DKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKNYLLPQLLE-- 89 + G+L L ++ Y + ++R ++ + YP +L I ++ L + ++P+++E Sbjct: 143 ETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVAIAVVSILLSVVVPKVVEQF 202 Query: 90 --GDGKNNWAVQLV---QIFPQLFFVSLCGLLVLGLILYLWVKRQSA--LVFYRRMAKIP 142 + +++ + F + L+ G + + + RQ + F+RR+ +P Sbjct: 203 IHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRVMLRQEKRRVSFHRRLLHLP 262 Query: 143 FIGQTVRLYTTAYYAREWGNLLGQGVDLLDLVALMQEQKSKLF-RELGADLEEALMLGQS 201 IG+ R TA YAR L V LL + + + S + R + +A+ G S Sbjct: 263 LIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMSNDYARHRLSLATDAVREGVS 322 Query: 202 FPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVWQNFFNRLNKATTFVQPLIFV 261 + + F + +IA GE + L LE A+ + F +++ A +PL+ V Sbjct: 323 LHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQDREFSSQMTLALGLFEPLLVV 382 Query: 262 IVAVVIVMIYVAMLLPMYQNMEGMMS 287 +A V++ I +A+L P+ Q + +MS Sbjct: 383 SMAAVVLFIVLAILQPILQ-LNTLMS 407
>FLAGELLIN#Flagellin signature. Length = 507 Score = 36.6 bits (84), Expect = 3e-04 Identities = 34/310 (10%), Positives = 84/310 (27%), Gaps = 2/310 (0%) Query: 215 ATGVDTLSSGASAYTSGVSTLSGALSQLNSNSEAVNSAAGQFASGAEAMNTLVTGANSLS 274 V +L G L N ++ A +N+ ++ + Sbjct: 161 KIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTA 220 Query: 275 TALSQMATATSLSEEQQTQLSSLSANLTDLNTAIQNLNTAVSNTSFPSGTSTTSVDTSSI 334 + + + + T + + + T TA + + DT Sbjct: 221 PTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDY 280 Query: 335 ATYLSNISSTASSIATASATDKANDLAAVQGTAAYQSLTADQQAEIASAISNAGSTASSY 394 I + + + N A + A+ A + N ++ + Sbjct: 281 KGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNG 340 Query: 395 ASTIASDVSSMSTALSSLAGTTTTSSGESSNLVSLQTSISGIASSANTLLPVASSTISSM 454 T + S LS L + + A+ L + I Sbjct: 341 QFTFDDKTKNESAKLSDLEANNAVKGESKITVNG--AEYTANAAGDKVTLAGKTMFIDKT 398 Query: 455 QANIANVNSVLVNQLSPGAIQVASGVSRAQSTLATGASNLLTGLSTYTGAVSTIASGAQT 514 + ++ + + + + A S + S+L + + A++ + + Sbjct: 399 ASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTN 458 Query: 515 LDANSSTLMN 524 L++ S + + Sbjct: 459 LNSARSRIED 468 Score = 35.0 bits (80), Expect = 0.001 Identities = 30/295 (10%), Positives = 86/295 (29%), Gaps = 3/295 (1%) Query: 259 GAEAMNTLVTGANSLSTALSQMATATSLSEEQQTQLSSLSANLTDLNTAIQNLNTAVSNT 318 G L ++ + + + +++ +T + V Sbjct: 171 GFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN 230 Query: 319 SFPSGTSTTSVDTSSIATYLSNISSTASSIATASATDKANDLAAVQGTAAYQSLTADQQA 378 + +T + + T + +T S+ TA A A + + + Sbjct: 231 AANGQLTTDDAENN---TAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTI 287 Query: 379 EIASAISNAGSTASSYASTIASDVSSMSTALSSLAGTTTTSSGESSNLVSLQTSISGIAS 438 + + G +++ + + TA ++ T S ++ + + Sbjct: 288 DTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDK 347 Query: 439 SANTLLPVASSTISSMQANIANVNSVLVNQLSPGAIQVASGVSRAQSTLATGASNLLTGL 498 + N ++ ++ + + + A + + T + Sbjct: 348 TKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLIN 407 Query: 499 STYTGAVSTIASGAQTLDANSSTLMNGFSTLKSGTNVLNTGVQQLAIGGNNLTNG 553 A + A+ ++D+ S + S+L + N ++ + L NL + Sbjct: 408 EDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSA 462 Score = 31.9 bits (72), Expect = 0.009 Identities = 29/299 (9%), Positives = 75/299 (25%), Gaps = 3/299 (1%) Query: 158 TSTYVGAVFKSMSQLQGGMGTAANGASQLYAGAGALQSGGQILSNGLGTLAGSTQTLATG 217 G ++ L+ + T + Sbjct: 171 GFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN 230 Query: 218 VDTLSSGASAYTSGVSTLSGALSQLNSNSEAVNSAAGQFASGAEAMNTLVTGANSLSTAL 277 + + ++ + + + AG G E G Sbjct: 231 AANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTK 290 Query: 278 SQMATATSLSEE-QQTQLSSLSANLTDLNTAIQNLNTAVSNTSFPSGTSTTSVDTSSIAT 336 + +S +++ A++T + S + S + Sbjct: 291 TGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKN 350 Query: 337 YLSNISSTASSIATASATDKANDLAAVQGTAAYQSLTADQQAEIASAISNAGSTASSYAS 396 + +S ++ A + + A AA +T + A ++ Sbjct: 351 ESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDK--TASGVSTLINE 408 Query: 397 TIASDVSSMSTALSSLAGTTTTSSGESSNLVSLQTSISGIASSANTLLPVASSTISSMQ 455 A+ S + L+S+ + S+L ++Q ++ + +S S ++ Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIE 467
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 45.8 bits (108), Expect = 2e-08 Identities = 17/84 (20%), Positives = 37/84 (44%) Query: 5 QRRSLTKKALLDALVICLKDQDFNEITTIRLVQTAGISRSSFYTHYKDKFEMIDSYQKEL 64 Q T++ +LD + Q + + + + AG++R + Y H+KDK ++ + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 65 FHKLEYIFDKYEGKKEGAFLEIFE 88 + + +Y+ K G L + Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLR 90
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.009 Identities = 11/30 (36%), Positives = 14/30 (46%) Query: 32 LIGANGAGKSTFLKILAGDIEPTTGHISLG 61 L G G GKST + L G + H +G Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDIG 630
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 64.6 bits (157), Expect = 1e-13 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 34/160 (21%) Query: 132 IVTNNHVVDGAKKLEIMLS------------DGSKITGELVGKDTYSDLAVVKVSSDKIT 179 ++TN HVVD L +G ++ DLA+VK S ++ Sbjct: 114 LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQN 173 Query: 180 -------TVAEFADSNSLTVGEKAIAIGSPLG-TEYANSVTEGIVSSLSRTITMQNDNGE 231 A +++ V + G P ++G ++ L Sbjct: 174 KHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLK----------- 222 Query: 232 TVSTNAIQTDAAINPGNSGGALVNIEGQVIGINSSKISST 271 A+Q D + GNSG + N + +VIGI+ + + Sbjct: 223 ---GEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNE 259
>PF06580#Sensor histidine kinase Length = 349 Score = 26.8 bits (59), Expect = 0.048 Identities = 5/26 (19%), Positives = 11/26 (42%) Query: 91 PKAGKLEVKVNATTDNGNLHLTIVDN 116 ++ + T DNG + L + + Sbjct: 274 QLPQGGKILLKGTKDNGTVTLEVENT 299
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 30.9 bits (70), Expect = 0.009 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 14/70 (20%) Query: 16 QNIKISLVFETDTHIEIQAKLDYPAPSCPHCHGKMIKYDFQKPSKIPLLEQAGTPTLLRL 75 + + + E L P CPHC+ + + IPLL + L L Sbjct: 47 AEYRSYFNPDDEGVDEPPYNLMVPRSCCPHCNHPITALE-----NIPLL------SWLWL 95 Query: 76 KKRRFQCKSC 85 + R C+ C Sbjct: 96 RGR---CRGC 102
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 52.8 bits (126), Expect = 1e-10 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 10/147 (6%) Query: 45 KGFIENLAPTAQKMSKNYGVPASILLSQAAYESNYGSSLLSVK----YHNIYSLPARPGQ 100 K F+ L+ AQ S+ GVP ++L+QAA ES +G + + +N++ + A Sbjct: 150 KAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNW 209 Query: 101 E--HIYLKDNVYSKGKWQYQKVDFAVFRDWSSSMSSYLEELRQGRWGESTYKEVAGTTSY 158 + + Y G+ + K F V+ + ++S Y+ L + Y V S Sbjct: 210 KGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTR----NPRYAAVTTAASA 265 Query: 159 KVAAEKLQAAGFNSDPDYAKHLISIIE 185 + A+ LQ AG+ +DP YA+ L ++I+ Sbjct: 266 EQGAQALQDAGYATDPHYARKLTNMIQ 292
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.0 bits (85), Expect = 3e-05 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 11/81 (13%) Query: 6 KKEEVKEEKATETT---EEVVEEAKEATETTEEVVEETKETSELEEAQARAEEFENKYLR 62 K E E+ ATETT EV +EAK + + E + SE +E Q + Sbjct: 1049 KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK------- 1101 Query: 63 VHAEMQNIQRRAKEERQQLQK 83 + +AK E ++ Q+ Sbjct: 1102 -ETATVEKEEKAKVETEKTQE 1121 Score = 33.5 bits (76), Expect = 4e-04 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 7/79 (8%) Query: 16 TETTEEVVEEAKEATETTE----EVVEETKETSELEEAQARAEEFE---NKYLRVHAEMQ 68 +ETTE V E +K+ ++T E + E T + E+ + + N+ + +E + Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 69 NIQRRAKEERQQLQKYRSQ 87 Q +E ++K Sbjct: 1094 ETQTTETKETATVEKEEKA 1112 Score = 32.0 bits (72), Expect = 0.001 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 23/169 (13%) Query: 7 KEEVKEEKATETTE-EVVEEAKEATETTEEVVEETKETSELEEAQARAEEFENKYLRVHA 65 E KE + TET E VE+ ++A TE+ E K TS++ Q ++E Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET---------- 1138 Query: 66 EMQNIQRRAKEERQQ-----LQKYRSQDLAKAILPALDNIERALAVEGLTDD-VKKGLEM 119 +Q +A+ R+ +++ +SQ A + + +T+ Sbjct: 1139 ----VQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNS 1194 Query: 120 IQESLINALKEEGIEEIAADGEF--NHNFHMAIQTMPADDEHPADTIAQ 166 + E+ N + ++ + +++++P + E + Sbjct: 1195 VVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSND 1243
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 156 bits (395), Expect = 1e-44 Identities = 77/364 (21%), Positives = 145/364 (39%), Gaps = 60/364 (16%) Query: 2 SKIIGIDLGTTNSAVAVLEG----TEPKIIANPEGNRTTPSVVSFKNGEIIVGDAAKRQA 57 S + IDLGT N+ + V EP ++A + +P V VG AK+ Sbjct: 10 SNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSV------AAVGHDAKQML 63 Query: 58 VTNPDTVISIKSKMGTSEKVSANGKEYTPQEISAMILQYLKSYAEEYLGEKVTKAVITVP 117 P + +I+ K + +++ ++ + S + + ++ VP Sbjct: 64 GRTPGNIAAIRPM-----KDGVIADFFVTEKMLQHFIKQVHSNS---FMRPSPRVLVCVP 115 Query: 118 AYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDKEEKILVFDLGGGTFDVS 177 +R+A +++ + AG ++ EP AAA+ GL + +V D+GGGT +V+ Sbjct: 116 VGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGL-PVSEATGSMVVDIGGGTTEVA 174 Query: 178 ILELGDGVFDVLATAGDNKLGGDDFDQKIIDYMVEEFKKENGIDLSTDKMALQRLKDAAE 237 ++ L V + ++GGD FD+ II+Y+ + G + AE Sbjct: 175 VISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYGSLIG-------------EATAE 216 Query: 238 KAKKDLS----GVTSTQISLPFITAGEAGPLHLEMTLTRAKFDDLTRDLVERTKTPVRQA 293 + K ++ G +I + E P + + +++E + P+ Sbjct: 217 RIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN---------SNEILEALQEPLTGI 267 Query: 294 LSDAGLSL--------SDIDE--VILVGGSTRIPAVVEAVKAETGKEPNKSVNPDEVVAM 343 +S ++L SDI E ++L GG + + + ETG + +P VA Sbjct: 268 VSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVAR 327 Query: 344 GAAI 347 G Sbjct: 328 GGGK 331
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 28.8 bits (64), Expect = 0.020 Identities = 9/37 (24%), Positives = 16/37 (43%) Query: 68 AIIAIVVVIWLYLRQYKSEAIFVGASGLLASILIVSL 104 A +AIVV + L+ + +F S ++ L Sbjct: 33 AAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQL 69
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 26.3 bits (58), Expect = 0.023 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Query: 24 KDKGIKLNHPEAVALITDYVLEGAREGKTVAQLMDEARNLLTR 66 K +GI LN P VA+ D A K+VA + +A+ +L R Sbjct: 27 KGQGIVLNEPSVVAIRQD----RAGSPKSVAAVGHDAKQMLGR 65
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 993 bits (2568), Expect = 0.0 Identities = 318/573 (55%), Positives = 413/573 (72%), Gaps = 4/573 (0%) Query: 1 MSFKMDREEYAQHYGPTVGDSVRLGDTNLFATIEKDFTVYGQESKFGGGKVLRDGMGVSA 60 MS++M R YA +GPTVGD VRL DT LF +EKDFT +G+E KFGGGKV+RDGMG S Sbjct: 1 MSYRMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQ 60 Query: 61 TETRDNPSVVDTIITGATIIDYTGIIKADIGIRDGKIVAIGRGGNPDTMDNVDFVVGAST 120 TR+ VDT+IT A I+D+ GI+KADIG++DG+I AIG+ GNPD V +VG T Sbjct: 61 V-TREG-GAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGT 118 Query: 121 EAIAAEGLIVTAGGIDLHVHYISADLPEFGMDNGITTLFGGGTGPADGSNATTCTPGKFH 180 E IA EG IVTAGG+D H+H+I E + +G+T + GGGTGPA G+ ATTCTPG +H Sbjct: 119 EVIAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWH 178 Query: 181 ITRMLQAVDDMPANFGFLAKGVGSETEVVEEQIKAGAAGIKTHEDWGATYAGIDNSLKVA 240 I RM++A D P N F KG S + E + GA +K HEDWG T A ID L VA Sbjct: 179 IARMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVA 238 Query: 241 DKYDVSFAVHTDSLNEGGFMENTLESFQGRTVHTFHTEGSGGGHAPDIMVFAGKENILPS 300 D+YDV +HTD+LNE GF+E+T+ + +GRT+H +HTEG+GGGHAPDI+ G+ N++PS Sbjct: 239 DEYDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPS 298 Query: 301 STNPTNPYTTNAIGELLDMVMVCHHLDPKIPEDVSFAESRVRKQTVAAEDVLHDMGALSI 360 STNPT PYT N + E LDM+MVCHHL P IPED++FAESR+RK+T+AAED+LHD+GA SI Sbjct: 299 STNPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSI 358 Query: 361 MTSDAMAMGRVGEVVMRCWQLADKMKAQRGPLEGDSEFNDNNRIKRYVAKYTINPAITNG 420 ++SD+ AMGRVGEV +R WQ ADKMK QRG L+ ++ NDN R+KRY+AKYTINPAI +G Sbjct: 359 ISSDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHG 418 Query: 421 IADYIGSVEVGKFADLVIWEPAQFGAKPKLVLKGGMLTYGVMGDAGSSLPTPQPRIMRKL 480 ++ IGS+EVGK ADLV+W PA FG KP +VL GG + MGD +S+PTPQP R + Sbjct: 419 LSHEIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPM 478 Query: 481 YGAYGQAVHKTNITFVSQYAYDHGIKEEIGLNKIVLPVKNTR-NLTKRDMKLNDYAPKTI 539 +GAYG++ +++TFVSQ + D G+ +G+ K ++ V+NTR + K M N P I Sbjct: 479 FGAYGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPH-I 537 Query: 540 RIDPQTFDVFIDDELVTCEPIHTTSLSQRYFLF 572 +DP+T++V D EL+TCEP ++QRYFLF Sbjct: 538 EVDPETYEVRADGELLTCEPATVLPMAQRYFLF 570
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.1 bits (86), Expect = 1e-04 Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 10/151 (6%) Query: 41 SLMLVGIYQTLENIISVIFNLF-GGVLSDNFQRKRIIILTDILSGVLCLALSFISNQQWL 99 +GI I+ + G ++ +R ++L I G + L+F + W+ Sbjct: 244 DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFA-TRGWM 302 Query: 100 IYAVVITNIILAFFSSFSGPAYKAFTKEVVEADNISKLNSLLESFITVVKVVVPLVSVSL 159 + +++ +LA PA +A V+ + +L L + ++ +V PL+ ++ Sbjct: 303 AFPIMV---LLASGGIGM-PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Query: 160 YGLLGLYGILRLDGITFIASGLLILFIRPIL 190 Y I +G +IA L L P L Sbjct: 359 YA----ASITTWNGWAWIAGAALYLLCLPAL 385
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.002 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 7/72 (9%) Query: 13 SNQELAATSEAASEAPATSEAPAKQPAVTSEVALEAPATSETPATQPASTNTLPTDPNLQ 72 S E T ++ AT E K T + TS+ Q S Q Sbjct: 1088 SGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETV-------Q 1140 Query: 73 PQAEAFRQDVAA 84 PQAE R++ Sbjct: 1141 PQAEPARENDPT 1152
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 25.4 bits (55), Expect = 0.024 Identities = 8/26 (30%), Positives = 14/26 (53%) Query: 13 RQRYSIRKYSFGATSVFIGASLMLGG 38 + YS+RK G SV + +++ G Sbjct: 7 NRHYSLRKLKTGTASVAVALTVLGAG 32
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 27.0 bits (59), Expect = 0.010 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%) Query: 11 QRFSIRKYSFGVASVLLGTSLV---FASQALADEHHEVATTSDTI 52 + +S+RK G ASV + +++ +E VAT S T Sbjct: 8 RHYSLRKLKTGTASVAVALTVLGAGLVVN--TNEVSAVATRSQTD 50
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.5 bits (74), Expect = 0.008 Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 6/73 (8%) Query: 806 YLPLADLLNVEEELARLEKELAKWQKELDMVGKKLSNERFVANAKPEVVQKERDKQKDYQ 865 + +L E + EL ++ +L+ + ++ +AK E + + + Sbjct: 248 AIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI------LSAKEEYQLVTQLFKNEIL 301 Query: 866 AKYDAIVVRIDEM 878 K I + Sbjct: 302 DKLRQTTDNIGLL 314
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 78.7 bits (194), Expect = 6e-18 Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 10/153 (6%) Query: 13 VNIGTIGHVDHGKTTLTAAI---TTVLARRLPSAVNTPKDYASIDAAPEERERGITINTA 69 +NIG + HVD GKTTLT ++ + + +V+ K D ER+RGITI T Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITE--LGSVD--KGTTRTDNTLLERQRGITIQTG 59 Query: 70 HVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMPQTREHILLSRQV 129 ++ E ID PGH D++ + + +DGAIL++++ DG QTR R++ Sbjct: 60 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 119 Query: 130 GVKHLIVFMNKVDLVDDEELLELVEMEIRDLLS 162 G+ I F+NK+D + L V +I++ LS Sbjct: 120 GIP-TIFFINKIDQNGID--LSTVYQDIKEKLS 149
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 5e-04 Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 56 QQRQQTEASNYQ--TLQDYNDAVANAAS---DLEKAQDVLNQTIIVSDVNGTVVEVA 107 ++ Q ++ L N +L K ++ ++I + V+ V ++ Sbjct: 286 KEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLK 342
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 26.6 bits (58), Expect = 0.033 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 20 GKQSTTTWADDNGNPLKPTEPGSKEPGTVSGYEYVKTVTDPNGNIKHIFKNVEMPTPRPV 79 G+ W +G + + + YE TVTD NG I K +++ +PV Sbjct: 803 GEIKAYEWDFGDGEKSNEAKA-THKYNKTGEYEVKLTVTDNNGGINTESKKIKVVEDKPV 861 Query: 80 EPSQPATPKD 89 E + P + Sbjct: 862 EVINESEPNN 871
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 46.6 bits (110), Expect = 4e-07 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Query: 8 FRTEKYIRYGIRKFSFGAASVAIAVGLMFLGNGVVSATEVQSAETAITTSASSQGDKETE 67 + Y +RK G ASVA+A L LG G+V T SA T S + +K E Sbjct: 2 TKNNTNRHYSLRKLKTGTASVAVA--LTVLGAGLVVNTNEVSAV--ATRSQTDTLEKVQE 57 Query: 68 KAEPKAETVETVKPE 82 +A+ T+K + Sbjct: 58 RADKFEIENNTLKLK 72
>PF05272#Virulence-associated E family protein Length = 892 Score = 38.1 bits (88), Expect = 1e-04 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 22/94 (23%) Query: 384 MVAIVGPTGAGKSTIINLLMRFYDVTAGSISVDGHDIRNLSRKDYRKQFGMVLQDAWLFE 443 V + G G GKST+IN L+ + + K + +E Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG-----------KDSYEQIAGIVAYE 646 Query: 444 GTIKENLRFGNLEA---TDEEIVEAAKAANVDHF 474 + A D E V+A ++ D + Sbjct: 647 --------LSEMTAFRRADAEAVKAFFSSRKDRY 672
>PF06580#Sensor histidine kinase Length = 349 Score = 46.4 bits (110), Expect = 1e-07 Identities = 51/335 (15%), Positives = 119/335 (35%), Gaps = 54/335 (16%) Query: 118 NLEAISLYLGIS-FFLSTGITLILRKLLLSHQRLRIATSKGNWLYQFIVPLLSIFFAFTI 176 + + S+ I+ + +T R + L++ + V + Sbjct: 36 SPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQIIL----RVLPACVVIGMVW 91 Query: 177 SAIQG--------------GVFGADYLSIISLSSLIVLTLSSLYFNLYLARQQQQYYQNQ 222 LSII ++ S LYF + Y Q + Sbjct: 92 FVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGW---HFFKNYKQAE 148 Query: 223 LEKEQLQFQVREIQQSQEEYQRLQSLR-----HDLKNKHLTLLSLLEKNPEEAKDYLYSL 277 +++ ++ +E Q L +L+ H + N + +L+ ++P +A++ L SL Sbjct: 149 IDQWKMASMAQEAQ--------LMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSL 200 Query: 278 TDSIVGEQTFYSKNQTINFLLNQKLHHLKDEIEME---------IDCFVPQELSIQPDIL 328 ++ ++ YS + ++ L +L + +++ + + + + Sbjct: 201 SE-LMRYSLRYSNARQVS--LADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQ-VP 256 Query: 329 AVILGNCLDNSIAACLRLPNKERNLSLNIRYFQQNLFINIRNNFDEKEKSTRKSRQKDGW 388 +++ ++N I + + + L + + + N K+T++S G Sbjct: 257 PMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKES---TGT 313 Query: 389 GLRNIDALVQEYQGN---IKHFIKDGQYQIEILLP 420 GL+N+ +Q G IK K G+ +L+P Sbjct: 314 GLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.9 bits (158), Expect = 3e-14 Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 12/138 (8%) Query: 39 KLLNQRTPDIHCVFLDINMPGINGIDVAQKIRKFNPFIPIIFVTSYRDYMEQV--FEVQT 96 + + D V D+ MP N D+ +I+K P +P++ +++ +M + E Sbjct: 41 RWIAAGDGD--LVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGA 98 Query: 97 FDYIVKPIEPQKLMKVLDRILRFLDIGQA-LFTFSFGKHNYSVPSS-------DIVFFEK 148 +DY+ KP + +L+ ++ R L + L S S+ + + Sbjct: 99 YDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQ 158 Query: 149 DKRSVFIYTKTGTYKSLL 166 ++ I ++GT K L+ Sbjct: 159 TDLTLMITGESGTGKELV 176
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 28.6 bits (63), Expect = 0.003 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 2/46 (4%) Query: 28 DNEGLSREYVRSFLMIKT--SCLDDAENKLNNLEKRYFSCQEDEPK 71 + + + Y S T S D A KL + + S +P Sbjct: 135 EAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPG 180
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 26.4 bits (58), Expect = 0.033 Identities = 10/27 (37%), Positives = 12/27 (44%) Query: 1 MKKLLICLALAFSLVTLGACGKNESAK 27 MKKL L L S + L AC + Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDT 27
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 185 bits (471), Expect = 8e-53 Identities = 103/470 (21%), Positives = 191/470 (40%), Gaps = 84/470 (17%) Query: 8 IRNVAIIAHVDHGKTTLVDELLKQSHTLDERMELDE--RALDSNDLEKERGITILAKNTA 65 I N+ ++AHVD GKTTL + LL S + E +D+ D+ LE++RGITI T+ Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 66 VAYNGTRINIMDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 125 + T++NI+DTPGH DF EV R + ++DG +L++ A +G QTR + + + Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 126 PIVVVNKIDKPSARPEEVVDEVLELF---------IELG-------------------AD 157 I +NKID+ V ++ E +EL + Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 158 DDQLE--------------------------FPVVYASAINGTSSLSDNPADQEHTMAPI 191 DD LE FPV + SA N + + Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIG------------IDNL 230 Query: 192 FDTIIDHIPAPVDNSDEPLQFQVSLLDYNDFVGRIGIGRIFRGTVKVGDQVTLSKLDGTT 251 + I + + L +V ++Y++ R+ R++ G + + D V +S Sbjct: 231 IEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRIS----EK 286 Query: 252 KNFRVTKLFGFFGLERREIEEAKAGDLIAISGMEDIFVGETITPTDAVEPLPALHIDEPT 311 + ++T+++ E +I++A +G+++ + E + + + T + + P Sbjct: 287 EKIKITEMYTSINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPL 345 Query: 312 LQMTFLANNSPFAGREGKHVTSRKVEERLLAELQTDVSLRVEPTDSPDKWTVSGRGELHL 371 LQ T + + + LL +D LR + + +S G++ + Sbjct: 346 LQTTVEPSKPQQRE---------MLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQM 396 Query: 372 SILIETMRRE-GYELQVSRPEVIIKEIDGVKCEPFERVQIDTPEEYQGSI 420 + ++ + E+++ P VI E K E +++ P + SI Sbjct: 397 EVTCALLQEKYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 39.5 bits (92), Expect = 4e-05 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 1/79 (1%) Query: 403 EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQMVGNGQTRLIFLVPARGLIGFSTEFLS 462 EP+ +I P+EY + +++D Q + N + L +PAR + + ++ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 463 MTRGYGIMNHTFDQYLPVV 481 T G + Y Sbjct: 596 FTNGRSVCLTELKGYHVTT 614
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 30.2 bits (68), Expect = 0.006 Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 309 ELSWETLKHELEQLVEHAETYKEA 332 +LS TLK E+ L+E ++EA Sbjct: 102 KLSVPTLKREMAGLLEWMRGWREA 125
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 49.4 bits (118), Expect = 1e-08 Identities = 39/196 (19%), Positives = 79/196 (40%), Gaps = 18/196 (9%) Query: 169 IRKTVERAGIQVENIVISPLAMTRAVLNEGEREFGATVIDMGGGQTTVATMRAQELQFTN 228 IR++ + AG + ++ P+A G+ V+D+GGG T VA + + +++ Sbjct: 126 IRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSS 185 Query: 229 IYPEGGEYITKDISKVLK------TSMQIAEALKFNFGNADIEEASETETVQVEVVGENS 282 GG+ + I ++ AE +K G+A + V+ + E Sbjct: 186 SVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGV 245 Query: 283 P--VEITEKYLAEIISARVKHILDRVKQDLTR------GRLLDLPGGIVLVGGTAIMPGV 334 P + + E + + I+ V L + + + G+VL GG A++ + Sbjct: 246 PRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISE--RGMVLTGGGALLRNL 303 Query: 335 VEVAQEIFETNVKLYI 350 + E ET + + + Sbjct: 304 DRLLME--ETGIPVVV 317
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.0 bits (65), Expect = 0.013 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 132 GFSPEELDTVLNQIKNLDKICIVGLMT-MAPIDANTQELDKIFAETNELRQSIQDKKLKN 190 GF P+ + TV Q++ + + + LM+ A + D I + Q+ + + + Sbjct: 132 GFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAE----HPDGISGAMARIEQAAEGLECRR 187
>adhesinb#Adhesin B signature. Length = 310 Score = 213 bits (545), Expect = 2e-67 Identities = 78/317 (24%), Positives = 141/317 (44%), Gaps = 20/317 (6%) Query: 1 MKKKRIFGLAGLAAVVLAAGVGIYYTTSQHDSKGNGDLKVVTSFYPVYEFTKQVVGDEGE 60 MKK R L LA V LAA + G+ L VV + + + TK + GD+ Sbjct: 1 MKKCRFLVLLLLAFVGLAA----CSSQKSSTETGSSKLNVVATNSIIADITKNIAGDKIN 56 Query: 61 VSYLIPAGSEVHDFQPSTKNVADIEKADTFVYLNENMET----WVPKVEKNINTKHTK-V 115 + ++P G + H+++P ++V +AD Y N+ET W K+ +N K K Sbjct: 57 LHSIVPVGQDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENKDY 116 Query: 116 IKASKGMILLPGTEEEDHDHGGEEHYHEYDPHVWLSPKRSQKLVKTIRDGLIAQHPDKKA 175 S+G+ + G+ + DPH WL+ + + I L + P K Sbjct: 117 YAVSEGV--------DVIYLEGQSEKGKEDPHAWLNLENGIIYAQNIAKRLSEKDPANKE 168 Query: 176 VFTTNAEKYLKKLQALDKEYTEAFSQ--AKQKSFVTQHSAFAYLALDYGLTQVPISGVSA 233 + N + Y++KL ALDKE E F+ ++K VT F Y + Y + I ++ Sbjct: 169 TYEKNLKAYVEKLSALDKEAKEKFNNIPGEKKMIVTSEGCFKYFSKAYNVPSAYIWEINT 228 Query: 234 ESDPSAKRIASLSKYVSEYDIKYIYFEENASSSIAKTLANEVGVKTAVLNPIESLTTDQL 293 E + + +I +L + + + + ++ E + KT++ + + +S+ Sbjct: 229 EEEGTPDQIKTLVEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYAKIFTDSVAEKG- 287 Query: 294 KKGEDYVSVMTENLKSL 310 ++G+ Y S+M NL+ + Sbjct: 288 EEGDSYYSMMKYNLEKI 304
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 60.5 bits (146), Expect = 5e-13 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 36 VTAKAEASYNQTTTAFIDSIGETARQIGQDYNIYASVLIAQAILESNSGQSGLSQA---P 92 V + S + AF+ + A+ Q + +++AQA LES GQ + + P Sbjct: 137 VPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEP 196 Query: 93 YYNFFGIK--GSYNGNSVTMRTWEDDGTGNTYEIDEPFRSYGSLSDSLADYAALMTSSTY 150 YN FG+K G++ G + T E + G ++ FR Y S ++L+DY L+T + Sbjct: 197 SYNLFGVKASGNWKGPVTEITTTEYE-NGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPR 255 Query: 151 SGTWKSNTSSYADATQTLTGTYATDSLYASKLNSIIE 187 + S+ A YATD YA KL ++I+ Sbjct: 256 YAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQ 292
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 59.3 bits (143), Expect = 3e-13 Identities = 30/192 (15%), Positives = 72/192 (37%), Gaps = 23/192 (11%) Query: 6 RRITKTRKAIYQAFLYLLNQKDYEAITVQEIIDLADVGRSTFYSHYESKELLLDELCQKL 65 + +TR+ I L L +Q+ + ++ EI A V R Y H++ K L E+ + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 66 FHHLFERTQYLSPQ----------DYLAHIFQ---HFKKNQDHVTSLLLSKNDY----FI 108 ++ E + + L H+ + ++ + + + + Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 109 RQLRKELEHDVYPMVADEL---IQS---HPNIPHSYLKHLVITNFIETLTWWLKKGKSYS 162 +Q ++ L + Y + L I++ ++ ++ + WL +S+ Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFD 186 Query: 163 EQEVVQFYLEIL 174 ++ + Y+ IL Sbjct: 187 LKKEARDYVAIL 198
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 27.8 bits (61), Expect = 0.039 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Query: 131 YGATPTAFHKADVLQRAITENNANKDSSVIVGDTKFDLIGGKTVGIKTIAVTWGFGTNET 190 YG+T TA ++ + + + A DSS+I G +T G +I +T G+G+ +T Sbjct: 756 YGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGS-----TQTAGYHSI-LTAGYGSTQT 809 Query: 191 LLAENPDFVA 200 E D Sbjct: 810 -AQERSDLTT 818
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 39.9 bits (93), Expect = 4e-08 Identities = 14/45 (31%), Positives = 25/45 (55%) Query: 1 MISVGWQENPDLEKIVELEPDLILMTGERKDLYEDLSEIAPTVGY 45 +I VG + P+LE + E++P ++ + E L+ IAP G+ Sbjct: 78 VIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGF 122
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 699 bits (1806), Expect = 0.0 Identities = 201/577 (34%), Positives = 329/577 (57%), Gaps = 30/577 (5%) Query: 1 MSFDGFFLHHMTAELREQVLYGRIQKVNQPFERELVLTIRNNRQNYKLLLSAHPVFGRIQ 60 M+ DG FL+ + EL+ ++ G+I KVNQP + E++L IR R ++KLL+S+ + RI Sbjct: 1 MALDGIFLYSIIDELKNTIINGKIDKVNQPEKDEIILNIRKGRLSFKLLISSSSNYPRIH 60 Query: 61 TTKAELPNPQNPNTYTMIMRKYLQGAVIEDIQQLENDRVLEISVSNKNEIGDSVKVTLVM 120 T PNP + M++RKY+ A I DI Q+ DR++ I + +E+G + +L++ Sbjct: 61 LTDLTKPNPIKAPMFCMVLRKYISNAKIVDIHQINQDRIVVIDFESTDELGFNSIYSLII 120 Query: 121 EIMGKHSNIILIDKNENKIIESIKHVGFSQNSYRTILPGSTYIAPPKTDARNPFDISDEN 180 EIMG+HSN+ LI K +N I++SIKH+ N+YR+I PG Y+ PPK+ NPFD S + Sbjct: 121 EIMGRHSNMTLIRKRDNIIMDSIKHITPDINTYRSIYPGIEYVYPPKSPKLNPFDFSYDM 180 Query: 181 LFELLQTED--LSAKNLQKLFQGLGRDTANELSALLETDKL---------------KNFR 223 + + L+ K+F G+ + ++E+ L+ + + F+ Sbjct: 181 IENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVEVCKDLFK 240 Query: 224 DFFNRGVEPNLTTKAFSAVRFS-------DSQDQPEFETLSELLDYYYLDKAARDRVAQQ 276 + + E N TK S V F + + ++++ S+LL+ +Y K DR+ + Sbjct: 241 EIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAKDKSDRLKSK 300 Query: 277 ASDLIHRVQNELEKNKKKLVKQEKELAATENAEEFRQKGELLTTFLSMVPNDKDSVELDN 336 +SDL V N + + KK L E+ + F+ GELLT + + +EL N Sbjct: 301 SSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYALKKGLSHIELAN 360 Query: 337 YYT--GEKITIPLNVALTPNQNAQRYFKKYQKLKEAVKHLTGLIEETKQTINYLESVEFS 394 YY+ + + I L+ TP+QN Q Y+KKY KLK++ + + + ++ +NYL SV + Sbjct: 361 YYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTN 420 Query: 395 LSQA-NMDEIEDIREELVQAGFMRRRST--DKRQKRKKPERYLASDGKTIIMVGRNNLQN 451 ++ A N DEIE+I++EL++ G+++ + K+ K KP +++ DG I VG+NN+QN Sbjct: 421 INNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISKDGID-IYVGKNNIQN 479 Query: 452 EELTFKIAKKGELWFHAKDIPGSHVVIKDNLNPTDEVKTDAAELAAYYSKARLSNLVQVD 511 + LT K A K ++WFH K+IPGSHV++K+ ++ + +AA LAAYYSK++ S+ V VD Sbjct: 480 DYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIPESTLLEAANLAAYYSKSQNSSNVPVD 539 Query: 512 MIDVKKLNKPTAGKPGFVTYTGQKTLRVTPTEEKIDS 548 +VK + KP KPG V Y+ +T+ VTPT + + Sbjct: 540 YTEVKNVKKPNGAKPGMVIYSTNQTIYVTPTNPNLKN 576
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 29.8 bits (66), Expect = 0.018 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 4/79 (5%) Query: 25 DNKEIVKEVSISLVDNVLLFGNAQLTTQLIKALSKNKVNGYYFSNVGQFISSIETHRQDE 84 +++++ + +S V NV+L + T +L+++ K+ +N Y +VG S + + R D+ Sbjct: 50 ESEKVFAQTVLSHVANVVL--TQEDTAKLLQSTVKHNLNNYDLRSVGNGNSVLVSLRSDQ 107 Query: 85 FQKQELQAKAYFEEDFRLE 103 Q+ AK E R E Sbjct: 108 MTLQD--AKVLLEAALRQE 124
>BICOMPNTOXIN#Staphylococcal bi-component toxin signature. Length = 315 Score = 24.5 bits (53), Expect = 0.050 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 1 MKKKTIVATTLSTLLVSTAILANAVKADEVETSTVITAPSTEVVTTEATTDMTS 54 M K I+ TTLS L+ + ++ + T +++ + T D TS Sbjct: 1 MLKNKILTTTLSVSLL-APLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTS 53
>cloacin#Cloacin signature. Length = 551 Score = 33.5 bits (76), Expect = 0.003 Identities = 13/22 (59%), Positives = 13/22 (59%) Query: 624 NSGSGGFGGGGFSGGGGGGGGG 645 SG G GG G SGGG G GG Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGN 80 Score = 33.1 bits (75), Expect = 0.004 Identities = 11/23 (47%), Positives = 11/23 (47%) Query: 623 SNSGSGGFGGGGFSGGGGGGGGG 645 S SG GG G GGG G G Sbjct: 50 SGSGIHWGGGSGHGNGGGNGNSG 72 Score = 32.4 bits (73), Expect = 0.007 Identities = 11/25 (44%), Positives = 12/25 (48%) Query: 622 NSNSGSGGFGGGGFSGGGGGGGGGA 646 S GG G G GG G GGG+ Sbjct: 51 GSGIHWGGGSGHGNGGGNGNSGGGS 75
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 35.5 bits (82), Expect = 3e-04 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 22/99 (22%) Query: 2 LLIKNGRVVDPKSGLDTQADVLVDGKKVVKI--AENIDAGD---------AQVIDATGLV 50 +I N ++D G+ +AD+ + ++ I A N D +VI G + Sbjct: 70 TVITNALILD-HWGI-VKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKI 127 Query: 51 VAPGLVDIHVHFREPGQTHKEDIHTGALAAAAGGFTTVV 89 V G +D H+HF P Q A G T ++ Sbjct: 128 VTAGGMDSHIHFICPQQ---------IEEALMSGLTCML 157
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.4 bits (76), Expect = 2e-04 Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 89 LFIDDLCVEEKARGQKLGEKLYQFALDYATEQECYNATLHVWNDNQGALDFYEHLGVK 146 I+D+ V + R + +G L A+++A E L + N A FY Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>PF06580#Sensor histidine kinase Length = 349 Score = 38.3 bits (89), Expect = 3e-05 Identities = 64/344 (18%), Positives = 127/344 (36%), Gaps = 69/344 (20%) Query: 36 LVLTGLFTIAYLLIVYLKKAYSKW--IPFLWFYTLAYIIFMSISFQGGMMWFVFFNVNLL 93 + L GL ++ + K + A ++ GM+WFV N Sbjct: 48 ISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVI-------GMVWFVA---NTS 97 Query: 94 VWRFEDSIASYRFLSFLATLLILTSSSFLLTDDLSTHLMSLAITLFSLGMYYFQNRMRQE 153 +WR I + L L + + ++T +L G ++F+N + E Sbjct: 98 IWRLLAFINTKPVAFTLPLALSIIFNVVVVT---------FMWSLLYFGWHFFKNYKQAE 148 Query: 154 RKMEEALAEKNRTINILSAENERNRIGRDLHDTLGHTFAMMSLKTELALKQMDKEQYDAA 213 + +A + +++ + + N + + L ++ + E A Sbjct: 149 ID-QWKMASMAQEAQLMALKAQINP--HFMFNALN------------NIRALILEDPTKA 193 Query: 214 RKNLEELNQISRDSMYEVREIINQLKYRTVAEEL------LELE--RLFDLSDIVLTVDS 265 R+ L L+++ R S+ + ++A+EL L+L + D ++ Sbjct: 194 REMLTSLSELMRYSLRYSNA-----RQVSLADELTVVDSYLQLASIQFEDRLQFENQINP 248 Query: 266 SLDLDSLSPVTQSTLSMVLRELANNVIKH---SQAERCQIRLN---RNHGIVLEFEDDGC 319 ++ +D P M+++ L N IKH + +I L N + LE E+ G Sbjct: 249 AI-MDVQVP------PMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGS 301 Query: 320 GF----KEVTGQELHSIRERLSLV---DGDLKILSQSHLTIIRV 356 KE TG L ++RERL ++ + +K+ + V Sbjct: 302 LALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 28.0 bits (62), Expect = 0.030 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 138 LLLSSLVFLSFGLLLVQI-KSQQIMAIVGNIVFFGLAIIGGSWMPVTLFPKWVQHISEWT 196 + L+ L F S G+++ + S +V + + G+ PV P Q + + Sbjct: 154 IALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAARFL 213 Query: 197 PIYHINQLVVN 207 P+ H L+ Sbjct: 214 PLSHSIDLIRP 224
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.4 bits (81), Expect = 2e-04 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 29/143 (20%) Query: 33 CLALIGPNGAGKTTLMSCILGDKKASSGQVFIKGKKGKAQDQIAVLLQENTIPSQLKVKE 92 + L G G GK+TL++ ++G S I K + + ++ E Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYE-----QIAGIVA---YELSE 649 Query: 93 LIAFFQDISDNGLSKVEIQALLQF---KDDQYQQFADKLSGGQKRLLAFVLCLIGKPDIL 149 + + + +A+ F + D+Y+ + R + C K L Sbjct: 650 M---------TAFRRADAEAVKAFFSSRKDRYRGAYGRYVQDHPRQVVIW-CTTNKRQYL 699 Query: 150 FLDEPTAGMDTTTRQRFWEIIND 172 F D T +RFW ++ Sbjct: 700 F--------DITGNRRFWPVLVP 714
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 28.0 bits (62), Expect = 0.033 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 21/123 (17%) Query: 106 RQIVTQAISSELKPTELDAIGTVD----NHLELLLVDSVDWEEEIEAVHLEILQEKINNY 161 +Q+V A +LKP + G +D N + +++ + IE ++E + Y Sbjct: 51 KQVVKNAELLKLKPVLITDEGKIDDKSFNQSAFEALKAINKQTGIEINNVEPSSNFESAY 110 Query: 162 IHFLES----------------KQYVERYGDSF-DKKVIHITFQYSPSDNGLAFLAAVQK 204 L + KQY++ + + ++ I + F + Sbjct: 111 NSALSAGHKIWVLNGFKHQQSIKQYIDAHREELERNQIKIIGIDFDIETEYKWFYSLQFN 170 Query: 205 VLQ 207 + + Sbjct: 171 IKE 173
>PF05272#Virulence-associated E family protein Length = 892 Score = 26.6 bits (58), Expect = 0.015 Identities = 11/46 (23%), Positives = 18/46 (39%) Query: 33 CVALIGPNGAGKTVLMSCILGDKKHSSGQVLIEGKWNSVNILDTFW 78 V L G G GK+ L++ ++G S I +S + Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIV 643
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.3 bits (193), Expect = 5e-19 Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 3/147 (2%) Query: 3 KILLVEDDEVIRQQVKKILEQWEYEVVLVEDFMEVLSLFVKEEPHLVLMDIGLPLFNGYH 62 IL+ +DD IR + + L + Y+V + + + + LV+ D+ +P N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 WCQEIRKV-SKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLL--RRS 119 I+K +P++ +S+++ M + A G D++ KPFD L+ I L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 120 YEFGKDQSLLEYMGVILNLKAMDLVYQ 146 + + M ++ AM +Y+ Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYR 151
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 41.6 bits (97), Expect = 2e-05 Identities = 50/391 (12%), Positives = 133/391 (34%), Gaps = 30/391 (7%) Query: 109 QKATASLVIVDKIGGQEIEKLGDKIKEVSDQIEQILGLNAEQFKQIILLPQNDFSRFLKE 168 Q+ I + + L K + D +++ + ++ + L E Sbjct: 56 QERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEK-----LRKNDKSLSE 110 Query: 169 DSKTKTQILKKIFGTGIFDRFQKSLEERLRQSNKDMDKRQAQIDSHFASQVWSEEELAVL 228 + ++ + ++ + + + +A+ + A + E+ L Sbjct: 111 KASKIQELEARKADL---EKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE-- 165 Query: 229 ASTPASEKLARLEEFLSQRQESLTEQKSILKAAHEDLAQLQKSFQTAQDLAKIFQELEQA 288 + S + + L + +L +++ L+ A E S + + + E Sbjct: 166 GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNF--STADSAKIKTLEAEKAAL 223 Query: 289 KERYRLEIEEGAQGQAEAKVHLEELQFAQGLQETIRTLKQYRKQLMQLEQDLEIAQEALS 348 R + + +++ + +LE+ LE A + Sbjct: 224 AARKADLEKALEGAMNFSTADSAKIK------TLEAEKAALEARQAELEKALEGAMNFST 277 Query: 349 EKQQAFEDVKAKKEELAIQSEDFLQKEEELETWKEDIIYSQSLAQEQEKIKRSTTNYKQL 408 + ++A+K L ++ +LE + + + + + + S KQL Sbjct: 278 ADSAKIKTLEAEKAAL-------EAEKADLEHQSQ--VLNANRQSLRRDLDASREAKKQL 328 Query: 409 EETYQQARKEVEMLNKSLSDLEANRLSLESLHEAEKLFQIVGYSVENQLAQDLKEIENLN 468 E +Q+ ++ ++ S L + L++ EA+K + +E Q ++L Sbjct: 329 EAEHQKLEEQNKISEASRQSLRRD---LDASREAKKQLEAEHQKLEEQNKISEASRQSLR 385 Query: 469 QELTKTEKRHQTLSFDIDQAQEILKELEEEL 499 ++L + + + + +++A L LE+ Sbjct: 386 RDLDASREAKKQVEKALEEANSKLAALEKLN 416 Score = 37.0 bits (85), Expect = 4e-04 Identities = 49/432 (11%), Positives = 114/432 (26%), Gaps = 50/432 (11%) Query: 393 QEQEKIKRSTTNYKQLEETYQQARKEVEMLNKSLSDLEANRLSLESLHEAEKLFQIVGYS 452 + K + N K L++ + +E+ + L + + S + + + Sbjct: 68 TLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEK 127 Query: 453 VENQLAQDLKEIENLNQELTKTEKRHQTLSFDIDQAQEILKELEEELRRTLVSRRQLMIV 512 + L + D+++A E Sbjct: 128 ALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK---------- 177 Query: 513 QLQAELEEGHPCMVCGALEHPNVGGAQADEVALKNLMDQVEKLQAQKEKQVATLSNRQAT 572 LE A + N E + A L+ R+A Sbjct: 178 --IKTLEAEK------AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKAD 229 Query: 573 LSEVASKRQDLLDQVTKVKATLEKHYQELEEHVKGRFDFDFSIDYETDRGQALLLKVEQY 632 L + + + TLE LE Sbjct: 230 LEKALEGAMNFSTADSAKIKTLEAEKAALEARQAE------------------------- 264 Query: 633 YQELQKRYDKEETDYIRYQDELGKAQKKA-TDLAKTYQEAKAVLDQAQERLEDLQEAHPE 691 ++ + T L + + A +++ + Q DL + Sbjct: 265 LEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREA 324 Query: 692 LESVEVYQERISLAHQELNLYNKQVKENSEAYNQLHADIKGIKGQIESITKSKDKVNQDV 751 + +E ++ + + + K ++ + + + + Sbjct: 325 KKQLE---AEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASR 381 Query: 752 KRLSAELEQSLKAEGALANDLEQVELWLIEV---NNQAIPMLQAKLTTYATLKQELQAQI 808 + L +L+ S +A+ + LE+ L + N + + A L+ +L+A+ Sbjct: 382 QSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEA 441 Query: 809 RKGQELLQNQEQ 820 + +E L Q + Sbjct: 442 KALKEKLAKQAE 453
>PF07675#Cleaved Adhesin Length = 1358 Score = 29.3 bits (65), Expect = 0.029 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 7/68 (10%) Query: 105 HGGPKGMQVQNWNYVTNLNDEYVETK------FIRRLYSSVDGFPGD-VTVSISYRLNNN 157 HGG + +WN + D Y+ +K ++ Y+ DGFPGD V IS N Sbjct: 853 HGGTNVVASFSWNGMALNPDNYLISKDVTGATKVKYYYAVNDGFPGDHYAVMISKTGTNA 912 Query: 158 NRLTILFE 165 T++FE Sbjct: 913 GDFTVVFE 920
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 161 bits (410), Expect = 3e-49 Identities = 77/346 (22%), Positives = 147/346 (42%), Gaps = 44/346 (12%) Query: 1 MAILVLGGAGYIGSHMVDRLVEKGQEKVVVVDSLVTGH-------RAAV--HPDAIFYQG 51 M LV G AG+IG H+ RL+E G +VV +D+L + R + P F++ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 52 DLSDQDFMRKVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMNECGV 111 DL+D++ M +F + V V S+E P Y D+N G + +LE + Sbjct: 60 DLADREGMTDLFASGH-FERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 112 KYIVFSSTAATYGIPEEIPILETTP-QNPINPYGESKLMMETIMKWSDQAYGIKYVPLRY 170 ++++++S+++ YG+ ++P +P++ Y +K E + YG+ LR+ Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 171 FNVAGAKPDGSIGEDHGPETHLLPIILQVAQGVREKIMIFGDDYNTPDGTNVRDYVHPFD 230 F V G P G P+ L + +G + I ++ G RD+ + D Sbjct: 179 FTVYG--PWGR------PDMALFKFTKAMLEG--KSIDVYN------YGKMKRDFTYIDD 222 Query: 231 LADAHLLAVEYLRKGNESTA---------------FNLGSSTGFSNLQILEAARKVTGKE 275 +A+A + + + + +N+G+S+ + ++A G E Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIE 282 Query: 276 IPAEKADRRPGDPDILIASSEKARTVLGWKPQFDNIEKIIASAWAW 321 +PGD A ++ V+G+ P+ ++ + + W Sbjct: 283 AKKNMLPLQPGDVLETSADTKALYEVIGFTPETT-VKDGVKNFVNW 327
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 64.8 bits (158), Expect = 3e-14 Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 35/189 (18%) Query: 2 ILVTGANGQLGTELRHLLDERNEEYVAVD------------------------VAEMDIT 37 LVTGA G +G + L E + V +D ++D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 38 DADKVDEVFAEVKPTLVYHCAAYTAV-DAAEDEGKELDYAINVTGTENVAKAAEKHG-AT 95 D + + ++FA V+ AV + E+ D N+TG N+ + + Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYAD--SNLTGFLNILEGCRHNKIQH 120 Query: 96 LVYISTDYVFNGEKPVGQEWEVDDKPD-PQTEYGRTKRMGEELVEKHVTNYYI----IRT 150 L+Y S+ V+ + + + DD D P + Y TK+ E + + Y + +R Sbjct: 121 LLYASSSSVYGLNRKM--PFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 151 SWVFGNYGK 159 V+G +G+ Sbjct: 179 FTVYGPWGR 187
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 35.6 bits (82), Expect = 1e-06 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Query: 17 EEAAEEAGPS-QEELLAEIRDLLANK 41 EE A P+ +E LL EIRDLL + Sbjct: 107 EEPAAAPAPTKEEVLLTEIRDLLKEQ 132
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 28.3 bits (63), Expect = 0.030 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Query: 1 MKKLFLGAMAFLVAVTLVACGSKKDADESIKENKKLVVAVSPDYPPFEFKTLVDGKDQVV 60 MKKL + FL A+ LVAC S + +KL V + + D + Sbjct: 1 MKKLGTLLVLFLSAIILVACASG---KKDTTSGQKLKVVAT-------NSIIADITKNIA 50 Query: 61 GSDIKL 66 G I L Sbjct: 51 GDKIDL 56
>adhesinb#Adhesin B signature. Length = 310 Score = 32.1 bits (73), Expect = 0.002 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Query: 1 MKKWLAVMGILGLSVMTLAACGNKGDSKVSGEKQTITVATDSDTAPFTFKKGDDFKGYDI 60 MKK + +L L+ + LAAC ++ S +G + VAT+S A T D ++ Sbjct: 1 MKKC-RFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVATNSIIADITKNIAGDK--INL 57 Query: 61 DLVKAVFKDSDKYEVK 76 + V +D +YE Sbjct: 58 HSIVPVGQDPHEYEPL 73
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.8 bits (90), Expect = 2e-06 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Query: 72 TLQRMAVLDDYQGQGLGSILLKEAEDFAQEQGFKSISLHAQ---LGALKFYLNNGY 124 ++ +AV DY+ +G+G+ LL +A ++A+E F + L Q + A FY + + Sbjct: 91 LIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.007 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 33 ITLTGPSGGGKSTLLRIIASMISKTSGTLIFDGQPIESYDPI 74 + L G G GKSTL+ + + + T G +SY+ I Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSD-THFDIGTGKDSYEQI 639
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 29.2 bits (65), Expect = 0.004 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Query: 23 FFLGIPLSKILVLTVLSSIAEVLMHLVLGKKSKVTLSD 60 F GIPL K+ S IA+ ++ LV G+ +T+ + Sbjct: 216 FKTGIPLKKL---AKPSDIADAVLFLVSGQAGHITMHN 250
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 25.2 bits (55), Expect = 0.029 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 7/37 (18%) Query: 32 GATVQGAIGGAIGGAFG-------GNVVLPVVGSVPG 61 G V A+G IG AFG ++++P +G + G Sbjct: 14 GNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIG 50
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 64.5 bits (157), Expect = 3e-13 Identities = 53/391 (13%), Positives = 140/391 (35%), Gaps = 31/391 (7%) Query: 27 LILLVIFLFLFAFFAKKEVTVTSRGSIEPTKVIAVIQSTSDNTIIDNQLVA-NKVVKKGD 85 ++ ++ F+ + + E+ T+ G + + I+ +N+I+ +V + V+KGD Sbjct: 64 IMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKP-IENSIVKEIIVKEGESVRKGD 122 Query: 86 TLVQYSETMEASQKEGLQKQLELLKRQESGLKTLQSSLTQGTNLFQEQEDEFGYQSTFNT 145 L++ + + Q L + +++ + L S+ + DE +Q+ Sbjct: 123 VLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEE 182 Query: 146 YLSQAQDIDLGVAKTNTEVNNQAAIASNTGSAIDNQISQLQTQVSEYEALSQAITNHETT 205 + + + + + + NQ + + +++ YE LS+ + Sbjct: 183 EVLRLTSL---IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD 239 Query: 206 LPEGNPHQATLNAYNSQYATTPDASVTDQYLSQVNTNISSLNASIGNLEIQKAGTGTVVT 265 ++L + Q + + + + + +E + Sbjct: 240 F-------SSL--LHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA----- 285 Query: 266 YDNSDSTKKEALKNQFLQNAGQQLSSVETQINDTESKINQADVLLTNTLIQSPEDGILHL 325 + + + F +L I ++ + + ++I++P + Sbjct: 286 -----KEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQ 340 Query: 326 SQADKKATMAATGTELAQLYPDMTQTQEVAITYYVNSDYVPKLQKGQSVRLTLDKVGNHG 385 + + + T L + P+ T EV V + + + GQ+ + ++ + Sbjct: 341 LKVHTEGGVVTTAETLMVIVPE-DDTLEVTAL--VQNKDIGFINVGQNAIIKVEAF-PYT 396 Query: 386 TT--IIGKLESIDNSATETER-GNVFRVTAR 413 ++GK+++I+ A E +R G VF V Sbjct: 397 RYGYLVGKVKNINLDAIEDQRLGLVFNVIIS 427
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 353 bits (907), Expect = e-123 Identities = 125/368 (33%), Positives = 188/368 (51%), Gaps = 19/368 (5%) Query: 5 LHRPTLAKVDLSAISENIEQVVSHIPKQVQTFAVVKANAYGHGAVEVAKHVSKQVDGFCV 64 + RP A +DL A+ +N+ V + ++VVKANAYGHG + + DGF + Sbjct: 1 MTRPIQASLDLQALKQNLSIVRQAAT-HARVWSVVKANAYGHGIERIWSAI-GATDGFAL 58 Query: 65 SNLDEALELRQAGIEQPILIL-GVVLPDGIPLAIQENISLTVASLEWLALAQKQELDLTG 123 NL+EA+ LR+ G + PIL+L G + + Q ++ V S L Q L Sbjct: 59 LNLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAP- 117 Query: 124 LTCHIKVDSGMGRIGVRNLKDADNLIAGLKALGAD-VEGIFTHFATADEADDSKFKRQLS 182 L ++KV+SGM R+G + + L+A+ + +HFA A+ D ++ Sbjct: 118 LDIYLKVNSGMNRLGFQP-DRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDG--ISGAMA 174 Query: 183 FFTDLVDNLTDRPRLVHASNSATSIWHAATVFNTVRLGVVIYGLNPSGSVLEL-PYNIQP 241 + L SNSA ++WH F+ VR G+++YG +PSG ++ ++P Sbjct: 175 RIEQAAEGL---ECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRP 231 Query: 242 ALSLETALIHVKTLPAGQDVGYGATYTTTDEEVIGTLPIGYADGWTRDL-QGFHVIVDGQ 300 ++L + +I V+TL AG+ VGYG YT DE+ IG + GYADG+ R G V+VDG Sbjct: 232 VMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGV 291 Query: 301 LCPIVGRVSMDQITVRLPKV--YPLGTPVTLMGENGGASITATEVAEKRGTINYEVLCLL 358 VG VSMD + V L +GTPV L G+ I +VA GT+ YE++C L Sbjct: 292 RTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGK----EIKIDDVAAAAGTVGYELMCAL 347 Query: 359 SDRVPRSY 366 + RVP Sbjct: 348 ALRVPVVT 355
>SECA#SecA protein signature. Length = 901 Score = 1059 bits (2740), Expect = 0.0 Identities = 392/910 (43%), Positives = 551/910 (60%), Gaps = 72/910 (7%) Query: 1 MANILRKIIENDKG-EIKKLEKTAKKVESYADAMAALSDEELQAKTEEFKQRYQNGESLD 59 + +L K+ + ++++ K + + M LSDEEL+ KT EF+ R + GE L+ Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 60 QLLPEAFAVVREGAKRVLGLFPYRVQIMGGIVLHYGDVAEMRTGEGKTLTATMPVYLNAI 119 L+PEAFAVVRE +KRV G+ + VQ++GG+VL+ +AEMRTGEGKTLTAT+P YLNA+ Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 120 SGEGVHVITVNEYLSERDATEMGELYSWLGLSVGINLSSKSPAEKREAYNCDITYSTSSE 179 +G+GVHV+TVN+YL++RDA L+ +LGL+VGINL KREAY DITY T++E Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 180 VGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSSETNQLYHRAD 239 GFDYLRDNM E VQR L++ALVDEVDS+LIDEARTPLI+SGP + ++Y R + Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSS-EMYKRVN 240 Query: 240 AFVKTLTED------------DYAIDIPTKTIGLNDSGIDKAEEFFN-------LENLYD 280 + L +++D ++ + L + G+ EE E+LY Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300 Query: 281 IDNVALTHYIDNALRANYIMLRDIDYVVSPEQEILIVDQFTGRTMEGRRFSDGLHQAIEA 340 N+ L H++ ALRA+ + RD+DY+V + E++IVD+ TGRTM+GRR+SDGLHQA+EA Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIVK-DGEVIIVDEHTGRTMQGRRWSDGLHQAVEA 359 Query: 341 KEGVPVQEETKTSASITYQNMFRMYKKLSGMTGTGKTEEDEFREIYNMRVIPIPTNRPIQ 400 KEGV +Q E +T ASIT+QN FR+Y+KL+GMTGT TE EF IY + + +PTNRP+ Sbjct: 360 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMI 419 Query: 401 RIDHDDLLYSTLDAKFRAVVQDVKRRYEKGQPVLIGTVAVETSDLISKMLVDAGIPHEVL 460 R D DL+Y T K +A+++D+K R KGQPVL+GT+++E S+L+S L AGI H VL Sbjct: 420 RKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVL 479 Query: 461 NAKNHEKEAHIIMNAGQRGAVTIATNMAGRGTDIKLG----------------------- 497 NAK H EA I+ AG AVTIATNMAGRGTDI LG Sbjct: 480 NAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 539 Query: 498 ------EGVLELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDELMRRFG 551 + VLE GGL +IGTERHESRRIDNQLRGRSGRQGD G S+FYLS+ED LMR F Sbjct: 540 DWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA 599 Query: 552 SDRIKHVLERLNADDEDIVIKSRMLTRQVESAQKRVEGNNYDTRKQVLQYDDVMREQREI 611 SDR+ ++ +L I+ +T+ + +AQ++VE N+D RKQ+L+YDDV +QR Sbjct: 600 SDRVSGMMRKLGMKP-GEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRA 658 Query: 612 IYAERYDVITAERDLEPEIKAMIKRTINRMVDGHSRNDQEEALKGILNF--ARQALVPED 669 IY++R +++ D+ I ++ + +D + E + I + D Sbjct: 659 IYSQRNELLDVS-DVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLD 717 Query: 670 AISLEDLKEVGEVTKRSVNYDAIKVYLTELADNVYDRQIKKLRSEEAIREFQKVLILMVV 729 E L + E+ + + ++ + + VY R+ + + E +R F+K ++L + Sbjct: 718 LPIAEWLDKEPELHE-----ETLRERILAQSIEVYQRKEEVVG-AEMMRHFEKGVMLQTL 771 Query: 730 DNKWTDHIDALDQLRNAVGMRGYAQNNPIVEYQSESFKMFQDMIGAIEYDVTRTMMKAQI 789 D+ W +H+ A+D LR + +RGYAQ +P EY+ ESF MF M+ +++Y+V T+ K Q+ Sbjct: 772 DSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQV 831 Query: 790 H---EQSREHVNERVSTTATGNIQAHQADANGQ--------EIDFSKVGRNDFCPCGSGK 838 E R+ +Q + + KVGRND CPCGSGK Sbjct: 832 RMPEEVEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGK 891 Query: 839 KFKNCHGRKQ 848 K+K CHGR Q Sbjct: 892 KYKQCHGRLQ 901
>cloacin#Cloacin signature. Length = 551 Score = 31.6 bits (71), Expect = 0.001 Identities = 12/41 (29%), Positives = 19/41 (46%) Query: 111 GHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFG 151 GH+ G+++ G N G G G S G +++ P G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGG 48
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.4 bits (68), Expect = 0.032 Identities = 46/259 (17%), Positives = 85/259 (32%), Gaps = 30/259 (11%) Query: 484 AFEIARRLGLNEIIVKEAENLTDTDSDVNRIIEQLESQTVETQKRLEHIKDVEQENLKFN 543 E R E KEAE + + +++E + ET+++L+ + E+ + Sbjct: 126 EDERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALS 185 Query: 544 RAVKKLYNEFSHEYDKELEKAQKEIQEMVDTALAESDSILKNLHDKSQLKPHEVIDAKGK 603 K + K+L AQ E+ +M E ++ L + E+ GK Sbjct: 186 EEAKAV-----EIAQKKLSAAQSEVVKMD----GEIKTLNSRLSSSIHARDAEMKTLAGK 236 Query: 604 LKKLAAQVDLSKNKVLRKAKKEKAARAPRVG----DDIIVTAYGQRGTLTSQAKNGNWEA 659 +LA K K A P + + Q + E Sbjct: 237 RNELAQASAKYKELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASET 296 Query: 660 QVGLIKMSLKADEFTLVRA------------QAEAQQPKKKQIN----VVKKAKKTSSDG 703 ++ I + + + + +AE KK Q N +K A + Sbjct: 297 RINRINADITQIQKAISQVSNNRNAGIARVHEAEENL-KKAQNNLLNSQIKDAVDATVSF 355 Query: 704 PRARLDLRGKRYEEAMQEL 722 + + G++Y + QEL Sbjct: 356 YQTLTEKYGEKYSKMAQEL 374
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 622 bits (1606), Expect = 0.0 Identities = 181/671 (26%), Positives = 299/671 (44%), Gaps = 65/671 (9%) Query: 9 KTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERGITITSAAT 68 K NIG++AHVDAGKTT TE +LY +G I ++G +G ++ D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TAQWNGHRVNIIDTPGHVDFTIEVQRSLRVLDGAVTVLDSQSGVEPQTETVWRQATEYGV 128 + QW +VNIIDTPGH+DF EV RSL VLDGA+ ++ ++ GV+ QT ++ + G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRIVFANKMDKIGADFLYSVSTLHDRLQANAHPIQLPIGAEDDFRGIIDLIKMKAEIYTN 188 P I F NK+D+ G D + ++L A +IK K E+Y N Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEI------------------VIKQKVELYPN 163 Query: 189 DLGTDILEEDIPAEYVDQANEYREKLIEAVAETDEDLMMKYLEGEEITNDELKAAIRRAT 248 T+ E + + V E ++DL+ KY+ G+ + EL+ Sbjct: 164 MCVTNFTESE---------------QWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRF 208 Query: 249 INVEFFPVLCGSAFKNKGVQLMLDAVIDYLPSPLDIPAIKGINPDTGEEETRPASDEAPF 308 N FPV GSA N G+ +++ + + S ++ Sbjct: 209 HNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH-------------------RGQSEL 249 Query: 309 AALAFKIMTDPFVGRLTFIRVYSGILQSGSYVMNTSKGKRERIGRILQMHANSRQEIEQV 368 FKI RL +IR+YSG+L V + K K +I + +I++ Sbjct: 250 CGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKA 308 Query: 369 YAGDIAAAIG----LKDTTTGDSLTDEKAKVILESIEVPEPVIQLMVEPKTKADQDKMAI 424 Y+G+I L GD+ + E IE P P++Q VEP ++ + Sbjct: 309 YSGEIVILQNEFLKLNS-VLGDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLLD 363 Query: 425 GLQKLAEEDPTFRVETNPETGETVISGMGELHLDVLVDRLKREHKVEANVGAPQVSYRET 484 L ++++ DP R + T E ++S +G++ ++V L+ ++ VE + P V Y E Sbjct: 364 ALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME- 422 Query: 485 FRAATQARGFFKRQSGGKGQFGDVWIEFTPNEEGKGFEFENAIVGGVVPREFIPAVEKGL 544 R +A + + + + +P G G ++E+++ G + + F AV +G+ Sbjct: 423 -RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGI 481 Query: 545 EESMANGVLAGYPMVDIKAKLYDGSYHDVDSSETAFKIAASLALKEAAKTAQPTILEPMM 604 G L G+ + D K G Y+ S+ F++ A + L++ K A +LEP + Sbjct: 482 RYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL 540 Query: 605 LVTITVPEENLGDVMGHVTARRGRVDGMEAHGNTQIVRAYVPLAEMFGYATTLRSATQGR 664 I P+E L + + N I+ +P + Y + L T GR Sbjct: 541 SFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR 600 Query: 665 GTFMMVFDHYE 675 + Y Sbjct: 601 SVCLTELKGYH 611
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.6 bits (71), Expect = 0.007 Identities = 17/144 (11%), Positives = 54/144 (37%), Gaps = 4/144 (2%) Query: 19 LYLKNVELKEQLNKSLEENADNLSDQISFQLENFAKTNQLETTKQLNQLQVALYQQLTDI 78 L + EL++ L ++ + + + + + E A + ++ + + + Sbjct: 188 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK 247 Query: 79 REVLHQNLSDNRDRSDQ--RLEQINQSLAKAVRDMQDSNEKRLEQMRQTVEEKLEQTLQT 136 + L + R + + + + + A + E + + + LE Q Sbjct: 248 IKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL-EAEKADLEHQSQV 306 Query: 137 RLQASFETVSRQLESVNQGLGEMK 160 L A+ +++ R L++ + +++ Sbjct: 307 -LNANRQSLRRDLDASREAKKQLE 329
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.9 bits (62), Expect = 0.022 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 10/60 (16%) Query: 9 ISMTPLVELRGAVPIAIASGI--PWWQALVLCMIGNMLP--------VPIIFFFARRVLK 58 I MT L + G +P+AI++G A+ + ++G M+ VP+ F RR K Sbjct: 974 ILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCFK 1033
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 44.1 bits (104), Expect = 2e-06 Identities = 55/267 (20%), Positives = 90/267 (33%), Gaps = 51/267 (19%) Query: 416 LTSKNLPD-SAIDLLDEASATVQVRIKKEAKREITPLDEALISG--DIGAAVKQYKANQK 472 +T +PD +A DLL RIKK P+ ++S A+K + Sbjct: 52 VTDVVMPDENAFDLLP--------RIKKARPD--LPV--LVMSAQNTFMTAIKASEKGAY 99 Query: 473 AKFPKPALVDADQIMQTLSRLSGIPVEKMTQTDSKRYLNLESELHKRVIGQDEAVSAISR 532 PKP D +++ + R P + ++ + + ++G+ A+ I R Sbjct: 100 DYLPKP--FDLTELIGIIGRALAEPKRRPSKLEDDSQDGMP------LVGRSAAMQEIYR 151 Query: 533 AIRRNQSGIRTGKRPIGSFMFLGPTGVGKTELAKALAEVLFDDESALLRFDMSEYMEKFA 592 + R + + M G +G GK +A+AL + + +M+ Sbjct: 152 VLAR----LMQTDLTL---MITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLI 204 Query: 593 ASRLNGAPPGYVGYDEGGELTEKVRNKPYSV-------LLFDEIEKAHPDIFNILLQVLD 645 S L G E G T L DEI D LL+VL Sbjct: 205 ESELFGH--------EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQ 256 Query: 646 DGVLT---DSRGRKVDFSNTIIIMTSN 669 G T + D I+ +N Sbjct: 257 QGEYTTVGGRTPIRSDVR---IVAATN 280
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 37.5 bits (87), Expect = 6e-05 Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 32/174 (18%) Query: 4 LQHIIMIALILIG-LATPALAQDQT--------DSFNVAAKHAIAIETTTGK--VLYEKD 52 +++I + + L+ L A Q + I ++ +G+ + D Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLS-GRVGMIEMDLASGRTLTAWRAD 59 Query: 53 ATTPDGVASMTKILTAYMVYKAVDQGKITWDTEVGISDYPFNLTVDSEVSNVPLDSRKY- 111 P + S K++ V VD G + ++ V P+ S K+ Sbjct: 60 ERFP--MMSTFKVVLCGAVLARVDAGDEQLERKIHYRQ-------QDLVDYSPV-SEKHL 109 Query: 112 ----TVKQLLDATLISSANSAAIALAEKISGTESTFVDTMTAQLKEWGITDAKL 161 TV +L A + S NSAA L + G +TA L++ G +L Sbjct: 110 ADGMTVGELCAAAITMSDNSAANLLLATVGGPAG-----LTAFLRQIGDNVTRL 158
>PF01540#Adhesin lipoprotein Length = 475 Score = 32.0 bits (72), Expect = 0.009 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%) Query: 201 QALLKGHEAIQELVDFQNYIVAAVGKEKAEVELFQVDADLKAEIEAVYYDQLAKAVQVEE 260 + LLK E IQ D + + +K FQ+D K ++ + K+ +V+ Sbjct: 128 KELLKLSEKIQSFADTIALTITKLEGKK-----FQIDETFKKQLISTIELLNKKSAEVKT 182 Query: 261 KLVREAATKAVKEEVLASYQERFAE 285 A +K++ L S E F E Sbjct: 183 F----ATVNTIKKDFLLSELESFKE 203
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 33.2 bits (75), Expect = 0.001 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 133 NNLLGEKNQKADPKDKIYLVPAFVHKREEDGQDDRFFATMSNAEGQSYMPVFTNLTSFAK 192 N LL ++ +A KDK A EE +D R ATM NA+ MP +++F Sbjct: 308 NYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAF-- 365 Query: 193 WYGSET 198 WY T Sbjct: 366 WYAVRT 371
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 28.2 bits (62), Expect = 0.014 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 48 YLGKKE-GAIVGGLSAFLIDLLSSAPQWMFISLFIHGAQG 86 YL K + G +L + A QW+F +F +G +G Sbjct: 232 YLSKVQYGNATPAADLYLWTSATPAVQWLFTLVFDYGERG 271
>PRPHPHLPASEC#Prokaryotic zinc-dependent phospholipase C signature. Length = 398 Score = 30.4 bits (68), Expect = 0.006 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 7/55 (12%) Query: 9 ALKELGFDLSQKQKDQFQRYFELLVEWNEKINLTAITDKD------EVFLKHFYD 57 + L DLS+ + + ++ E+L E ++ L T D +++ HF+D Sbjct: 46 GVSILENDLSKNEPESVRKNLEILKENMHELQL-GSTYPDYDKNAYDLYQDHFWD 99
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.4 bits (240), Expect = 3e-25 Identities = 31/116 (26%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 1 MSK-RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEM 59 M+ IL+ +D+ + ++ L GYDV N D DL++ D+++P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 DGFEVTRRLQQE-KDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIR 114 + F++ R+++ D +++M+A+++ M + ++GA DY+ KPF + EL+ I Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 4e-04 Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 28/111 (25%) Query: 389 VITILIDNAVKY--SPVNKKIQITIKALEDE--MLVQVQDNGEGISKEDIEHIFERFYRS 444 ++ L++N +K+ + + + +I +K +D + ++V++ G K Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN------------ 306 Query: 445 DKARNRTTTQSGVGIGLSILYQIVEAY---RCHIDVSSELGVGTRFDLYIP 492 T+ G GL + + ++ I +S + G + IP Sbjct: 307 --------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 39.8 bits (93), Expect = 2e-05 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 8/87 (9%) Query: 36 GVTRDRIYTSAEWLNRQFSLIDTGGIDDVDAPFMEQIKHQAGIAMTEADVIVFVVSGKEG 95 G+T TS +W N + ++IDT G D F+ ++ +++ D + ++S K+G Sbjct: 53 GITIQTGITSFQWENTKVNIIDTPGHMD----FLAEVYR----SLSVLDGAILLISAKDG 104 Query: 96 VTDADEYVARILYKTNKPVILAVNKVD 122 V + L K P I +NK+D Sbjct: 105 VQAQTRILFHALRKMGIPTIFFINKID 131
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 29.3 bits (65), Expect = 0.022 Identities = 10/23 (43%), Positives = 16/23 (69%) Query: 237 RRVIENTVRETLPDDFQKAEFLQ 259 R +EN ++ + DD +KAEFL+ Sbjct: 139 RNFMENIIQPPILDDKEKAEFLK 161
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 155 bits (392), Expect = 5e-51 Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 4/149 (2%) Query: 7 VESFELDHTIVKAPYVRLISEEVGPKGDIITNFDIRLIQPNENSIDTGGLHTIEHLLAKL 66 ++SF +DHT + AP VR+ PKGD IT FD+R PN++ + G+HT+EHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 67 IRQRIDG----LIDCSPFGCRTGFHMIMWGKQDPTEIAKVIKSSLEAIANEITWEDVPGT 122 +R ++G +ID SP GCRTGF+M + G ++A +++E + +P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 123 TIESCGNYKDHSLHSAKEWAKLILEQGIS 151 CG HSL AK+ AK ILE G++ Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILEVGVA 151
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 0.001 Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 18/189 (9%) Query: 26 LSKAKEQAETILLKAEQDAVNLRSQAEHDADHLRVTAERESKAQRKELLLEAK-EKARKY 84 LS++ E + LK + E + E+ S Q ++ E +K R Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAE 215 Query: 85 REDIEEEFKSERQELKQMENRLTERATSLDRKDENLSSKELALEKKEQSLADKSKHLNER 144 R + + ++RL + ++ L ++ + + A+ ++E + L Sbjct: 216 RLTVLARINRYENLSRVEKSRLDDFSSLLHKQ----AIAKHAVLEQENKYVEAVNELRVY 271 Query: 145 EENVAQLEAEKQAELERIGQMTIAEAREVILTETENNLTHEIATRIKDAEAQIKDTVDKK 204 + + Q+E+E I A+E T+ +EI +++ I + Sbjct: 272 KSQLEQIESE------------ILSAKEEYQLVTQ-LFKNEILDKLRQTTDNIGLLTLEL 318 Query: 205 AKNLLAQAM 213 AKN Q Sbjct: 319 AKNEERQQA 327
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 27.9 bits (62), Expect = 0.023 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 4/50 (8%) Query: 1 MLKSERKQIILSQLKQDGFVTLENLTVLLSD----TSESTIRRDLDELAA 46 M K +R I + + T + L +L +++T+ RD+ EL Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHL 50
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 54.8 bits (132), Expect = 9e-11 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 12/97 (12%) Query: 102 NEQFSMNDTQPMTAGSTYKLPLNMLVMDEVNRGKLSLTERFDINNTEY-EYQGEHDKYVA 160 +E+F M ST+K+ L V+ V+ G L + + +Y +K++ Sbjct: 59 DERFPMM--------STFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHL- 109 Query: 161 SFGGAMTIPEMQEYSLVYSENTPAYALAERLGGMEKF 197 MT+ E+ ++ S+N+ A L +GG Sbjct: 110 --ADGMTVGELCAAAITMSDNSAANLLLATVGGPAGL 144
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 146 bits (369), Expect = 2e-47 Identities = 47/147 (31%), Positives = 85/147 (57%), Gaps = 2/147 (1%) Query: 21 TNTKTKAVLNQAVADLSVAASIVHQVHWYMRGPGFLYLHPKMDELMDSLNSHLDKISERL 80 T + LN +++ + S +H+ HWY++GP F LH K +EL D +D I+ERL Sbjct: 9 NQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERL 68 Query: 81 ITIGGEPYSTLVEFSSNSGLTETTGTFDQPMSDRIQLLVDIYKYLSVLFQVGLDITDEEG 140 + IGG+P +T+ E++ ++ +T+ + S+ +Q LV+ YK +S + + + +E Sbjct: 69 LAIGGQPVATVKEYTEHASITDGGN--ETSASEMVQALVNDYKQISSESKFVIGLAEENQ 126 Query: 141 DVPSNDIFTDAKSEIDKTIWMLTAELG 167 D + D+F E++K +WML++ LG Sbjct: 127 DNATADLFVGLIEEVEKQVWMLSSYLG 153
>PF03309#Bvg accessory factor Length = 271 Score = 34.4 bits (79), Expect = 5e-04 Identities = 37/165 (22%), Positives = 52/165 (31%), Gaps = 29/165 (17%) Query: 5 LLGIDLGGTTVKFGILTADGEVQE---KWAIETNTFENGSHIVPDIVESLKHRLELYGLT 61 LL ID+ T G+++ G+ + +W I T + D + L G Sbjct: 2 LLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTE-----PEVTADELALTIDG--LIGDD 54 Query: 62 AEDFIGIGMGSPGAVDRENKTVTGAFNLNWAETQEVGSVIEKELGIPFAIDNDANVAALG 121 AE G S V V W V GIP +DN V A Sbjct: 55 AERLTGASGLS--TVPSVLHEVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGA-- 110 Query: 122 ERWVGAGAN----NRNVVFITLGTGVG-----------GGVIADG 151 +R V A + + G+ + GG IA G Sbjct: 111 DRIVNCLAAYHKYGTAAIVVDFGSSICVDVVSAKGEFLGGAIAPG 155
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.020 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 18/99 (18%) Query: 63 LADDNRTKEWRTYFESQ---GIKTL----------AINSKEQSTVKLVTDAAKSLMTEKI 109 AD NR +R + ++Q + L + + ++ + K ++ + Sbjct: 526 AADMNRVHPFRDWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHV 585 Query: 110 QRLRERGIQKETLRTMII--GIPNAGKSTLMNRLAGKKI 146 R+ E G + ++ G GKSTL+N L G Sbjct: 586 ARVMEPGCK---FDYSVVLEGTGGIGKSTLINTLVGLDF 621
>PF03309#Bvg accessory factor Length = 271 Score = 38.2 bits (89), Expect = 2e-05 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 13/69 (18%) Query: 1 MILAIDIGGTFIKFGLVDDD---------FRISSQSKESTPTTIDDFWRILESIVSSFKN 51 M+LAID+ T GL+ +RI ++ + T D+ ++ ++ Sbjct: 1 MLLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEV----TADELALTIDGLIGDDAE 56 Query: 52 DISGIAIAC 60 ++G + Sbjct: 57 RLTGASGLS 65
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 3e-18 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 2/123 (1%) Query: 2 ARILVIDDQKDIVQLVVKALELQNHNVTGLTSVLDLDKN-SLPRFDLILLDIMMPDVDGL 60 A ILV DD I ++ +AL ++V ++ L + + DL++ D++MPD + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 61 QFCHEIRN-QVDCPILFITAKTQEADIVQGLSYGADDYICKPFGVKELQARVAAHLRREH 119 I+ + D P+L ++A+ ++ GA DY+ KPF + EL + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 120 RER 122 R Sbjct: 124 RRP 126
>PF06580#Sensor histidine kinase Length = 349 Score = 32.5 bits (74), Expect = 0.003 Identities = 26/188 (13%), Positives = 65/188 (34%), Gaps = 43/188 (22%) Query: 250 AQVDAYVKELSELNKMSLKKTLTLEEVPVKEFVEDIYDQTLSLAQTK---QINVVFDKKE 306 + + LSEL + SL+ + +V + + + + D L LA + ++ Sbjct: 191 TKAREMLTSLSELMRYSLRYS-NARQVSLADELTVV-DSYLQLASIQFEDRLQFENQ--- 245 Query: 307 IAKESIGNWDKSLLNRAI-----MNIVSNAVEH----TPSGSQLLLTARVEEDEFKFICL 357 + ++++ + +V N ++H P G ++LL + Sbjct: 246 --------INPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVE 297 Query: 358 DSGPGFSLESLENATQLFYQEDKSRQSRNHSGLGLTIANDIIRLHYG-SLSLANDNGTGG 416 ++G + ++ +G GL + +++ YG + G Sbjct: 298 NTGSLAL-----------------KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGK 340 Query: 417 AKVTIILP 424 +++P Sbjct: 341 VNAMVLIP 348
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.7 bits (69), Expect = 4e-04 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 5/82 (6%) Query: 2 LYILLKEGKIIGVCTVDVSGNSN---YLYGLAIAEAYRGQGYGSYLVKSVVNQLIAQNDE 58 ++ E IG + + N N + +A+A+ YR +G G+ L+ + + Sbjct: 67 AFLYYLENNCIG--RIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFC 124 Query: 59 AFQIVVEDSNIGAKRLYENIGF 80 + +D NI A Y F Sbjct: 125 GLMLETQDINISACHFYAKHHF 146
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 30.1 bits (67), Expect = 0.019 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 8/87 (9%) Query: 246 DLNKQLEKNIADAAKFT-EKTKPGKIENNKQEYKRLSEEIAFLQEKVDAGNKI-VPLSGT 303 +L + + IA AK E + +E+N Q +R ++ A QE++ + I LS Sbjct: 312 ELKDDIVEQIAQQAKEAGEVARQQAVESNAQAQQRYEDQHARRQEELQLSSGIGYGLSSA 371 Query: 304 LVLEFGNTAENIYAGMDED-YRRYQPA 329 L++ G I AG+ +RR QPA Sbjct: 372 LIVAGG-----IGAGVTTALHRRNQPA 393
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 3e-04 Identities = 28/187 (14%), Positives = 65/187 (34%), Gaps = 34/187 (18%) Query: 252 DETNRMMRMISDLL--ALSRIDNKSTQLNVEMTNFTAFMTYILNRFGQIKSQETNPGKSY 309 + M+ +S+L+ +L + + L E+T +++ +F Sbjct: 191 TKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFE----------DRL 240 Query: 310 EIIRDYPVNSIWVEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKTTDTQLIVSISDQG 369 + + V++ + +++N + + I P GGKI + + + + + + G Sbjct: 241 QFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG 300 Query: 370 LGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIVKQHNGF---IWAKSEYGKGS 426 K + TG GL +E ++ G I + GK Sbjct: 301 SLALKNT------------------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV- 341 Query: 427 TFTIVLP 433 +++P Sbjct: 342 NAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99.1 bits (247), Expect = 3e-26 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 1/133 (0%) Query: 3 KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLE 62 ILV DD+ I ++ L++ GY+V + A DLV+ D+++P+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VAKEIRKT-SHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 + I+K P++++SA+++ + E GA DY+ KPF EL+ I L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 IETAVEESSNSGK 134 + +E+ S G Sbjct: 125 RPSKLEDDSQDGM 137
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 1e-17 Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 6/154 (3%) Query: 2 KLLVAEDQSMLRDALCQLLMLEDDVEEVHVASDGQEAIALLEKEEVDVAILDIEMPVKTG 61 +LVA+D + +R L Q L +V + S+ + + D+ + D+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 LDVLEWIRANQRETKVVIVTTFKRKGYFKRALAAQVDAYVLKERSISDLMATIHTVLAGQ 121 D+L I+ + + V++++ +A Y+ K +++L+ I LA Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 122 KEYSPELVEGVAFDNNPL---SQREQEVLAMVAQ 152 K P +E + D PL S QE+ ++A+ Sbjct: 123 KR-RPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155