>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1043 bits (2698), Expect = 0.0 Identities = 352/569 (61%), Positives = 441/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKF 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNFGFLAKGNVSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MN F KGN S +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 55.4 bits (133), Expect = 3e-11 Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSSYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKVLYNSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFST 114 DV + +++++G +D +V+ E E + S F+ Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHHIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L +++IR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.4 bits (71), Expect = 0.006 Identities = 37/207 (17%), Positives = 83/207 (40%), Gaps = 1/207 (0%) Query: 23 VLIPLLILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFL 82 V +P + + P + + A ++ + G+ + LS + ++ + + + Sbjct: 35 VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV 94 Query: 83 VCYFDSIPFFWLWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVF 142 + + F L + RFI G ++A LV + Y+ + + GLI S V +G Sbjct: 95 IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 143 SGFVLPWISSYNIKWAWIFLGGSCLIAFILSLVGLKTRSLRKKSVKKEESAFKIPFHLWL 202 + I+ Y I W+++ L I + L+ L + +R K + + + Sbjct: 155 GPAIGGMIAHY-IHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 203 LLISCALNAIGFLPHTLFWVDYLIRHL 229 ++ +I FL ++ ++H+ Sbjct: 214 FMLFTTSYSISFLIVSVLSFLIFVKHI 240
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 72.0 bits (176), Expect = 2e-15 Identities = 55/272 (20%), Positives = 83/272 (30%), Gaps = 18/272 (6%) Query: 140 ELENLGDLEALAKEEPNNEEQLLPTLDAQEEKEEVKQEEKQEVKETPQKEEKPKDDETQE 199 E+E N Q A EE V E P P T Sbjct: 984 EVEKRNQTVDTTNITTPNNIQ------ADVPSVPSNNEEIARVDEAP---VPPPAPATPS 1034 Query: 200 GETLKDEEVSKELEMQEKLEIPKEETQEEVKEEIKEEAQEEVKEETQEEQVKEQ--EPIK 257 T E SK+ + E+ +EA+ VK TQ +V + E + Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 258 EETQEIKEEKQEETQDSPSAQELEAMQELVKKIQENSNGQENKEETQESTEIPQDKEIQE 317 +T E KE E ++ E E QE+ K + S QE E Q E ++ + Sbjct: 1095 TQTTETKETATVEKEEKAKV-ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 318 VITEKTQVQ----ELEIPKEKTQESAEALQETQVHELEKQEIAETPQDVEVPQAQEKETP 373 I E + E P ++T + E + E P++ Q Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN- 1212 Query: 374 QEETQEVVTEKTQVQEKETPKTQEDHYESIED 405 E+ + + + P E S D Sbjct: 1213 -SESSNKPKNRHRRSVRSVPHNVEPATTSSND 1243 Score = 57.0 bits (137), Expect = 1e-10 Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 23/230 (10%) Query: 158 EEQLLPTLDAQEEKEEVKQEEKQEVKETPQKEEKPKD------DETQEGETLKDEEVSKE 211 E ++++E + V++ E+ + T Q E K+ TQ E + +KE Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 212 LEMQEKLEIPKEETQEEVKEEIKEEAQEEVKEETQEEQVKEQEPIKEETQEIKEEKQEET 271 + E E E +E+ K E E+ QE K +Q K+E+ E Sbjct: 1095 TQTTETKETATVEKEEKAKVE-TEKTQEVPKVTSQVSP--------------KQEQSETV 1139 Query: 272 QDSPSAQELEAMQELVKKIQENSNGQENKEETQESTEIPQDKEIQEVITEKTQVQELEIP 331 Q +K+ Q +N + E+ + T ++ + E T T +E P Sbjct: 1140 QPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENP 1199 Query: 332 KEKTQESAEALQETQVHELEKQEIAETPQDVEVPQAQEKETPQEETQEVV 381 + T + + ++ K + + VP E T + V Sbjct: 1200 ENTTPATTQPTVNSESSNKPKNRHRRSVR--SVPHNVEPATTSSNDRSTV 1247 Score = 50.8 bits (121), Expect = 1e-08 Identities = 40/263 (15%), Positives = 85/263 (32%), Gaps = 42/263 (15%) Query: 266 EKQEETQDSPSAQELEAMQELVKKIQENSNGQENKEETQESTEIPQDKEIQEVITEKTQV 325 EK+ +T D+ + +Q V + N+ +E P + Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 326 QELEIPKEKTQESAEAL-QETQVHELEKQEIAETPQDVEVPQAQEKETPQEETQEVVTEK 384 QE + ++ Q++ E Q +V + K + Q EV Q+ + T++ Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE-----------TKE 1094 Query: 385 TQVQEKETPKTQEDH------YESIEDIP---------------EPVMAKAMGEELPFLN 423 TQ E + T E E +++P A+ E P +N Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 424 EAVAKTPNNENDT------ETPKESVTEISKNENATETPQEKE---ESDKTSSPLELRLN 474 ++ N ET ++++ E + ++ + Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSE 1214 Query: 475 LQDLLKSLNQESLKSLLENKTLS 497 + K+ ++ S++S+ N + Sbjct: 1215 SSNKPKNRHRRSVRSVPHNVEPA 1237 Score = 42.4 bits (99), Expect = 4e-06 Identities = 24/197 (12%), Positives = 60/197 (30%), Gaps = 17/197 (8%) Query: 111 QKKLGSNISELEPSQNLDPTQEVLETNWDELENLGDLEALAKEEPNNEEQLLPTLDAQEE 170 + + E N+ + E E KE E++ + + Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE-----EKAKV 1114 Query: 171 KEEVKQEEKQEVKETPQKEEKPK------DDETQEGETLKDEEVSKELEMQEKLEIPKEE 224 + E QE + + K+E+ + + + T+ +E + E P +E Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 225 TQEEVKEEIKEEAQEEVKEETQEEQVKEQEPIKEETQEIKEEKQEETQDSPSAQELEAMQ 284 T V++ + E E P + E+ + P + +++ Sbjct: 1175 TSSNVEQPVTESTTVNTGNSVVE------NPENTTPATTQPTVNSESSNKPKNRHRRSVR 1228 Query: 285 ELVKKIQENSNGQENKE 301 + ++ + ++ Sbjct: 1229 SVPHNVEPATTSSNDRS 1245
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (486), Expect = 3e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.019 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 102 KGETILKALECIAFE---EFQLHSLHLEVMENNFKAIAFYEKNHYELEG 147 + + + AL A E E L LE + N A FY K+H+ + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.008 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 30 VVALLGESGAGKSTILRILAGLE 52 V L G G GKST++ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 198 bits (504), Expect = 2e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPTNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>PF03944#delta endotoxin Length = 633 Score = 32.7 bits (74), Expect = 0.002 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 6/110 (5%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQYASQFLDLVPLSAKKSQ-NLNALLECISKYLNPSAW 176 + L +L ++Q Q L L+PL A+ + +L+ + + I LN W Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAANLHLSFIRDVI---LNADEW 198
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.023 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 277 APENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQ--------EAELAKY--KLKDLE 326 S + EE+ E +E L K E ++ +Y K+ +LE Sbjct: 44 GTLQSIADMAEEVTF-----VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELE 98 Query: 327 NQKKLKALEAELKKKN 342 ++ + L + L Sbjct: 99 QKQNVSELLSLLSNSP 114
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.0 bits (98), Expect = 3e-05 Identities = 35/223 (15%), Positives = 84/223 (37%), Gaps = 25/223 (11%) Query: 707 TPEAKKLLEEEAKESVKAYLDCVSQAKTETEKKECEKLLTPEAKKKLEEAKKSVKAYLDC 766 P ++ + + ++KT + ++ T + ++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 767 VSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAK 826 A++ +E KE + T E + +++ AK E +K + V KV ++ Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKTQEV--------PKVTSQ 1128 Query: 827 ESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEE--AKESLKAYKDCVSRAKNEAEKK 884 S K Q ++E + + E + ++E ++ + A + ++ + ++ Sbjct: 1129 VSPK-------QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 885 ECEKLLTPEAKKLLEEEAKESVNAYLDCVSQAKTETEKKECEK 927 + T + E + + A +E+ K + Sbjct: 1182 PVTESTTVNTGNSVVENPENTTPA--TTQPTVNSESSNKPKNR 1222 Score = 37.7 bits (87), Expect = 5e-04 Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 23/201 (11%) Query: 891 TPEAKKLLEEEAKESVNAYLDCVSQAKTETEKKECEKLLTPEAKKKLEEAKKSVKAYLDC 950 P ++ + + ++KT + ++ T + ++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 951 VSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAK 1010 A++ +E KE + T E + +++ AK E EK + V KV ++ Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKTQEV--------PKVTSQ 1128 Query: 1011 ESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEE--AKESLKAYKDCVSRAKNEAEKK 1068 S K Q ++E + + E + ++E ++ + A + ++ + ++ Sbjct: 1129 VSPK-------QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 1069 ECEKLLTPEAKKLLEEAKESV 1089 + T + E E+ Sbjct: 1182 PVTESTTVNTGNSVVENPENT 1202 Score = 37.4 bits (86), Expect = 7e-04 Identities = 37/222 (16%), Positives = 87/222 (39%), Gaps = 7/222 (3%) Query: 984 KNAKTEAEKKRCVKDLP-KDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARK 1042 + + E+ V + P ++ + + ++KT + ++ T + R+ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 1043 LLEEAKESLKAYKDCVSRAKNEAEKKECEKLLTPEAKKLLEEAKESVKAYK--DCVSRAR 1100 + +EAK ++KA A++ +E KE + T E + +E K V+ K + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 1101 NEKEKKECEKLLTPEAKKLLEQQALDCLKNAK----TEAEKKRCVKDLPKDLQKKVLAKE 1156 K+E + + P+A+ E +K + T A+ ++ K+ ++++ V Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 1157 SVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKA 1198 +V V N + + + K + S+++ Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRS 1229 Score = 36.6 bits (84), Expect = 0.001 Identities = 40/263 (15%), Positives = 92/263 (34%), Gaps = 15/263 (5%) Query: 9 ETSKKTQQDSPQDLSNEEATEVNHFEDLLKEESSDNHLDNPTETKTHFDGDKSEETQT-Q 67 E SK Q+ + + ++ATE + +E+ N N + G +++ETQT + Sbjct: 1042 ENSK--QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 68 IDSEGNETSESSNGSLADKLFKKARKLVDDKRPFTQQKSLDEEAQKLNEEDDQEN-NEYQ 126 E +K + + Q +++ +A+ E D N E Q Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 127 EETQIDLIDDETSKKTQQHSPQDLSNEEATEVNH--FEDLLKEESSNNHLDNPTETKTHF 184 +T ++ +K+T + Q ++ + E+ + +E+ Sbjct: 1160 SQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219 Query: 185 DGDKSEETQ---TQIDSEGNETSESSNGSLADKLFKKARKLVDDKRPFTQQ------KSL 235 + ++ +++ S +L D ++ D R Q K++ Sbjct: 1220 KNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAV 1279 Query: 236 DEEAQKLNEEDDQENNEYQEDTQ 258 + +L ++ + N + +T Sbjct: 1280 SQHISQLEMNNEGQYNVWVSNTS 1302 Score = 35.4 bits (81), Expect = 0.003 Identities = 33/181 (18%), Positives = 71/181 (39%), Gaps = 29/181 (16%) Query: 825 AKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCVSRAKNEAEKK 884 ++ + + ++KT + ++ T + R++ +EAK ++KA A++ +E K Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 885 ECEKLLTPEAKKLLEEEAKESVNAYLDCVSQAKTETEKKECEKLLTPEAKKKLEEAKKSV 944 E + T E K+ E +E +AK ETEK + +T + K Sbjct: 1094 ETQ---TTETKETATVEKEE----------KAKVETEKTQEVPKVTSQVSPK-------- 1132 Query: 945 KAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQ 1004 Q ++E + + E + +++ A TE K ++ + + Sbjct: 1133 --------QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVT 1184 Query: 1005 K 1005 + Sbjct: 1185 E 1185 Score = 32.0 bits (72), Expect = 0.031 Identities = 29/187 (15%), Positives = 70/187 (37%), Gaps = 4/187 (2%) Query: 623 KARNEKEKKECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 680 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 681 ESLKAYKDCVSRAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTETEKKE 740 E+ K + E ++ T E K+ E +E K + + T + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 741 CEKLLTPEAKKKLEEAKKSVKAYL--DCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDC 798 ++ + + + E A+++ + SQ T A+ ++ K + ++ + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 799 LKNAKTE 805 N+ E Sbjct: 1191 TGNSVVE 1197
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 873 bits (2256), Expect = 0.0 Identities = 514/522 (98%), Positives = 517/522 (99%) Query: 1 MGQAFFKKIVGCFCLGYLFLSSVIEAAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 MGQAFFKKIVGCFCLGYLFLSS IEA A DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EETIKQRAKDKISIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EE ++QRAKDKISIKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQKELIKQENLNTTAYINRVMMASNE 360 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQ+ELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (298), Expect = 6e-35 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNVVAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 26.8 bits (59), Expect = 0.021 Identities = 12/36 (33%), Positives = 15/36 (41%) Query: 34 GKLIGGGVGGFVGDKIGGAIGVPGGPVGIGLGRFLG 69 G G GG D++ + GG GI G LG Sbjct: 220 GSQRGTVAGGVNTDRLTSVLSSAGGSFGIFNGDVLG 255
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (708), Expect = 2e-96 Identities = 113/245 (46%), Positives = 162/245 (66%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 645 GNVFSQTGNSGQALIGAANTGR--RGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKA 702 ++ S GN L ++ T +S + S V+L NL Q+ + AN++ Sbjct: 472 ASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQV 531 Query: 703 VTTSDQILNTLLNLK 717 + T++ I + L+N++ Sbjct: 532 LQTANAIFDALINIR 546 Score = 39.6 bits (92), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 40.9 bits (96), Expect = 8e-06 Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 12/176 (6%) Query: 211 AASIATLSNDERELGVACVDMGGETCNLTIYSGNSIRYNKYLPVGSHHLTTDL------S 264 AA+I G VD+GG T + + S N + Y+ + +G + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 265 HMLNTPFPYAEEVKIKYGDLSFEGGEETPSQSVQIPTTGSDGHESHIVPLSEIQTIMRER 324 + AE +K + G S G+E V+ + +EI ++E Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFKIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELARTHFTNYPVRLA 377 + +++ E + G+VLTGG AL++ + L T PV +A Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLM-EETGIPVVVA 318
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.3 bits (65), Expect = 0.010 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 9/63 (14%) Query: 50 YNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKP 109 ++R ++P E F P+ + + N+ A+EK D ++++ L+ E FEK P Sbjct: 293 HSRSGEQPKGFTESFKAPE---------LGVGNLGASEKSDVFLVVSTLLHCIEGFEKNP 343 Query: 110 ELK 112 E+K Sbjct: 344 EIK 346
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 148 bits (375), Expect = 4e-46 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 KMDNKTVAGDVSAKTVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAIESGTIIASIYFDF 80 + DN ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGETKPKCTQ-----KTR----ECYKENRRVDVKL 177 + KG+ D I GE+ P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.004 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 70 QISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVV---GLYDY 126 VI T F SNL A FE + D + ++ VV G+YDY Sbjct: 414 TFGSVIPATGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGEVVIPGGVYDY 473 Query: 127 IIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIR 171 I + PA G + I A P + + FA E K T+R Sbjct: 474 CITNPEPASGKMWI----AGDGGNQPARYDDFAFEAGKKYTFTMR 514
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.0 bits (75), Expect = 0.001 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 70 EPEVQILKDLKPDFIVVVAYGKILPKEVLAIAP 102 EP +++L ++KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 37.4 bits (86), Expect = 2e-04 Identities = 46/244 (18%), Positives = 87/244 (35%), Gaps = 45/244 (18%) Query: 379 SKLSGKLKELEKQITKSIEKFDEQIAYWQEKTKLEEQLKESKKIRKKYQSIIDAFTDKDY 438 K+ G++K L +++ SI D E L + E + KY K+ Sbjct: 206 VKMDGEIKTLNSRLSSSIHARD------AEMKTLAGKRNELAQASAKY---------KEL 250 Query: 439 LDKRDKLQAKRKALIDLKQSKEGFLTFIKELKRIVNFESKENM-----EEKNSYDKVYNQ 493 + KL + D Q++ F + + E K+ N + Q Sbjct: 251 DELVKKLSPRAN---DPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQ 307 Query: 494 LKQDICKKLEEIDADIKNGRFKSDEENIEKLELEHQTL----------LQEIGEFLKEKG 543 +++ I + +A I + + L + + Q + E EK Sbjct: 308 IQKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIKDAVDATVSFYQTLTEKYGEKY 367 Query: 544 ------VSDESIG-DVRNANYHLANIKKNIDDLKHEIKE-----IANKIENFSYEDMDKN 591 ++D+S G + N N LA +K D L + + I N + + Y+D K+ Sbjct: 368 SKMAQELADKSKGKKIGNVNEALAAFEKYKDVLNKKFSKADRDAIFNALASVKYDDWAKH 427 Query: 592 IEEF 595 +++F Sbjct: 428 LDQF 431
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.7 bits (100), Expect = 2e-06 Identities = 30/231 (12%), Positives = 70/231 (30%), Gaps = 21/231 (9%) Query: 5 QTIPFICPKCQEPIDVNEALYKQIEQENQSRFLAQQKAFEKEVNEKRAQYQ--------- 55 P P P + E + + +QE+++ +Q A E + + Sbjct: 1021 DEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANT 1080 Query: 56 SHFKILEQKEEALKEREREQKAQFDDAVKQASALALQDERAKIIEEARKNAFLEQQKGLE 115 ++ + E KE + + + K+ A ++ ++ + + + ++Q Sbjct: 1081 QTNEVAQSGSET-KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETV 1139 Query: 116 LLQKELEEKS------KQVQELHQKEAEIERLKRENN----EAESRLKAENEKKLNEKLD 165 Q E ++ K+ Q A+ E+ +E + + + N + Sbjct: 1140 QPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENP 1199 Query: 166 LEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQ 216 +E K + +R+ N A SS Sbjct: 1200 ENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHN-VEPATTSSNDRSTVAL 1249
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.7 bits (225), Expect = 2e-23 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 1 MQK-KIFLLEDDYLLSESVKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEM 59 M I + +DD + + + L GY+V N + ++ +L++ DV +P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 NSLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117 N+ +L RIK PV+ ++A T A GA DYL KPFDL EL I R Sbjct: 61 NAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 474 bits (1221), Expect = e-171 Identities = 179/347 (51%), Positives = 248/347 (71%), Gaps = 2/347 (0%) Query: 2 IFSKLIGLFSHDIAIDLGTANTIVLVKGQGIIINEPSIVAVRMGLFDSKAYDILAVGSEA 61 + K G+FS+D++IDLGTANT++ VKGQGI++NEPS+VA+R S + AVG +A Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKS-VAAVGHDA 59 Query: 62 KEMLGKTPNSIRAIRPMKDGVIADYDITAKMIRYFIEKAHKRKTW-IRPRIMVCVPYGLT 120 K+MLG+TP +I AIRPMKDGVIAD+ +T KM+++FI++ H PR++VCVP G T Sbjct: 60 KQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGAT 119 Query: 121 SVERNAVKESALSAGAREVFLIEEPMAAAIGAGLPVKEPQGSLIVDIGGGTTEIGVISLG 180 VER A++ESA AGAREVFLIEEPMAAAIGAGLPV E GS++VDIGGGTTE+ VISL Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN 179 Query: 181 GLVISKSIRVAGDKLDQSIVEYIRKKFNLLIGERTGEEIKIEIGCAIKLDPPLTMEVSGR 240 G+V S S+R+ GD+ D++I+ Y+R+ + LIGE T E IK EIG A D +EV GR Sbjct: 180 GVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGR 239 Query: 241 DQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVKPDLAKDIVQNGVVLTGGGAL 300 + G+ L+S+++ EA+++ + I SA+ LE+ P+LA DI + G+VLTGGGAL Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299 Query: 301 IKGLDKYLSDMVKLPVYVGDEPLLAVAKGTGEAIQDLDLLSRVGFSE 347 ++ LD+ L + +PV V ++PL VA+G G+A++ +D+ FSE Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSE 346
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 41.0 bits (96), Expect = 8e-06 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 20/116 (17%) Query: 134 LEHLEEVELSKSNILLLGPTGSGKTLMAQTLAKHLD------IPI---AISDATSLTEAG 184 L + + +++ G +G+GK L+A+ L + + I AI L E+ Sbjct: 150 YRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR--DLIESE 207 Query: 185 YVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS--------RLSENRSITR 232 G + T S ++A+ G +F+DEI + R+ + T Sbjct: 208 LFGH-EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTT 262
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 29.0 bits (65), Expect = 0.020 Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 5/74 (6%) Query: 83 TPVKKSATIIDLGGAKAQIIRNIPKSIRKNFIAAHPMCGTEFYGPKASVKGLYENALVIL 142 P + L GA + ++RK + Y L Sbjct: 18 APAVEGDVSFRLSGATSSSYGVFISNLRKALPYERKLYDIPLLRSTLPGSQRY-----AL 72 Query: 143 CDLEDSGTKQVEIA 156 L + + + +A Sbjct: 73 IHLTNYADETISVA 86
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (571), Expect = 3e-78 Identities = 64/147 (43%), Positives = 94/147 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLEMMQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERLE + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEI 150 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 30.8 bits (69), Expect = 0.009 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 20/126 (15%) Query: 238 YQQDLRDP-NLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKG 296 + D+RD + EI +G ++ +AGVL L+ L E Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEW------------ 109 Query: 297 RLEIVHSQPLVVVDFAHTTDGMQQVFESFKNQKITALFGAGGDRDKTKRPKMGAIASCYA 356 + V+ + + V + +++ ++ G + R M A AS A Sbjct: 110 -------EATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKA 162 Query: 357 HKIVLT 362 ++ T Sbjct: 163 AAVMFT 168
>PF06340#Vibrio cholerae toxin co-regulated pilus biosynthesis protein F (TcpF) Length = 338 Score = 28.0 bits (62), Expect = 0.025 Identities = 13/38 (34%), Positives = 21/38 (55%) Query: 103 NGGHNGLKSIDALCSNSYYRLRVGISKGIGVIEHVLSK 140 N NG K + + SNS Y+ ++ ++KG G + SK Sbjct: 294 NDMRNGYKWSNTMFSNSNYKTQILLTKGDGSGVKLYSK 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 5e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 34.1 bits (78), Expect = 0.010 Identities = 45/235 (19%), Positives = 84/235 (35%), Gaps = 27/235 (11%) Query: 1262 EQDYEIIKDFMDKVGKNNINLNEQTLNEYFIHHPENILGHLSLEETRYSFEVNGEQIYKY 1321 ++ E+ KD ++ N N T N F+ L + + Y Sbjct: 229 KEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFY 288 Query: 1322 ELQA----LEDKSLDLSQALNQAIEKLPKGVYQYHKTTLKTDALIIDANNERYQEVQKLI 1377 + L+ KS DL + + I + K + T K + + + ++ +L+ Sbjct: 289 YAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCE------DKDIFKLYGELL 342 Query: 1378 K----NVERG-ELVKWDNLYYQLEQNNERGIFLKPTKINSKVQDSRLKAYFKIKDALNDL 1432 +++G ++ N YY E + I L K S+ S K Y K+K + Sbjct: 343 TANIYALKKGLSHIELAN-YYS-ENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAA 400 Query: 1433 ------TSAELNPLSS---DLELENKRAKLNLVYDEFVKKFGYLNENKNRKDIKQ 1478 ELN L S ++ + ++ + E ++ GY+ K K K Sbjct: 401 NEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIET-GYIKFKKIYKSKKS 454
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 111 bits (279), Expect = 1e-28 Identities = 58/271 (21%), Positives = 110/271 (40%), Gaps = 21/271 (7%) Query: 180 ELEHKKNQIIKRLNTQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTYQHLIHKHESR 239 L+ K + + K + R +K + L + + + LL + + K S Sbjct: 296 RLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYALKKGLSH 355 Query: 240 VVLKDFED---KERAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLHLEEENLKEKIAFKE 296 + L ++ I +D++ + + + K K+ + + + +E++ + Sbjct: 356 IELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLY 415 Query: 297 NQINYVKGAQEESVLE------------MFIPVKNSKIKRPMSGYEVLYYKDFKIGLGKN 344 + + + A +E F + SK + + I +GKN Sbjct: 416 SVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDIYVGKN 475 Query: 345 QKENIKL-LQDARANDLWMHVRDIPGSHLIVFCQKNTPKDEVIMELAKMLIKMQKDAFNS 403 +N L L+ A +D+W H ++IPGSH+IV + P + ++E A + K +S Sbjct: 476 NIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIP-ESTLLEAANLAAYYSKSQNSS 534 Query: 404 -YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 +DYT+ K VK GA VIYS +TI Sbjct: 535 NVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 32.9 bits (75), Expect = 0.003 Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 7/93 (7%) Query: 46 SVPYIGLSKKPPESVLKNILALDFC--LNKFTKNAKILQANVIDNDRILEIT-GTKDLAY 102 + P I L+ + +K A FC L K+ NAKI+ + I+ DRI+ I + D Sbjct: 55 NYPRIHLTDLTKPNPIK---APMFCMVLRKYISNAKIVDIHQINQDRIVVIDFESTDELG 111 Query: 103 KSENFILRLEMIPKKANLMILD-QEKCVIEAFR 134 + + L +E++ + +N+ ++ ++ ++++ + Sbjct: 112 FNSIYSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 133 bits (336), Expect = 1e-40 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALILAIVLISILPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.5 bits (68), Expect = 0.010 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 194 KEKEEETIIIGDNTNAMKIVKKDIQKGYKALKSSQ--RKWYCLGICSKKSKLSLMPKEIF 251 K +EE+ II D A+ + Q + ALK + R + K+SK +MP EIF Sbjct: 367 KIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSEIF 420 Query: 252 NDKQFTYFKF 261 +D FTYF F Sbjct: 421 DDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.5 bits (217), Expect = 2e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEN 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.9 bits (122), Expect = 2e-09 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCTYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIAS----------MPS-------VMNVGSGVDYSIEEYYEMVAQVLDYKGVFVKD 265 + I P+ V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.019 Identities = 40/187 (21%), Positives = 86/187 (45%), Gaps = 12/187 (6%) Query: 376 HTEEELSSKVEQLSRNADDVKSILDIINDIADQTNLLALNAAIEAARAGEHGRGFAVVAD 435 H++++ + K++Q D V LD IN + + +++ +E R + A Sbjct: 41 HSDQKDNKKLDQ----KDQVNQALDTINKVTED-----VSSKLEGVRESSLELVESNDAG 91 Query: 436 EVRNLAGRTQKSLAEINSTIMVIVQEINAVSSQMNLNSQKMERLSDMSK-SVQETYEKMS 494 V+ G + ++++ +V QE V+ + ++ ++ +MSK +VQET + +S Sbjct: 92 VVKKFVG-SMSLMSDVAKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKAVS 150 Query: 495 SNLSSVVSDSNQSMDDYAKSGHQIEAMVSDFAEVEKVASKTLAGSSDILNIATHVSGTTM 554 + Q M + + + ++E +FA+VE+V +TL S L+ + + Sbjct: 151 VAGEATFLIEKQIMLNKSPNNKELELTKEEFAKVEQV-KETLMASERALDETVQEAQKVL 209 Query: 555 NLDKQVN 561 N+ +N Sbjct: 210 NMVNGLN 216
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 225 bits (574), Expect = 7e-79 Identities = 60/145 (41%), Positives = 91/145 (62%), Gaps = 7/145 (4%) Query: 5 VESFNLDHTKVKAPYVRVADRKKGANGDVIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEI 64 ++SF +DHT++ AP VRVA + GD I +D+RF PNKD + +H+LEHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 65 IRNHA----SYVVDWSPMGCQTGFYLTVLNHDNYTEVLEVLEKTMQDVLKAK---EVPAS 117 +RNH ++D SPMGC+TGFY++++ + +V + M+DVLK + ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 118 NEKQCGWAANHTLEGAKNLARAFLD 142 NE QCG AA H+L+ AK +A+ L+ Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILE 147
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 28.3 bits (63), Expect = 0.043 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 14/76 (18%) Query: 253 QKNALCVAEFLEKHLKVERVYYPGLPTHPNYELAKAQMR-----GFSGMLSFTLKNDSEA 307 + NA+ L ++ +V+ P Y+ + Q+R GFS + Sbjct: 80 RNNAMSFRRALLRYRDGAKVHLGTRPDEKQYDTVETQLRFMTENGFS---------LRDG 130 Query: 308 VAFVESLKLFILGESL 323 + + ++ F LG L Sbjct: 131 LYAISAVSHFTLGAVL 146
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 149 bits (378), Expect = 3e-42 Identities = 77/384 (20%), Positives = 141/384 (36%), Gaps = 86/384 (22%) Query: 5 IGIDLGTTNSAMAVYEG----NEAKIIA-NKEGKNTTPSIVAFTDKGEILVGESAKRQAV 59 + IDLGT N+ + V NE ++A ++ + S+ A VG AK+ Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA--------VGHDAKQMLG 64 Query: 60 TNPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYTPQEISAKIL 119 P I +I+ + ++G A + +++ + Sbjct: 65 RTPGN-IAAIRPM-----------------------KDGVIA-----DFFVTEKMLQHFI 95 Query: 120 MKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALAYG 179 ++ ++ ++ VP +R+A +E+ AG + +I EP +AA+ G Sbjct: 96 KQVHSNS---FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAG 152 Query: 180 LDKKESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLASEFK 239 L E+ MV D+GGGT +V V+ V +GGD FD +I+++ + Sbjct: 153 LPVSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYG 207 Query: 240 NETGIEIKNDVMALQRLKEAAENAKKELSSAM----ETEINLPFITADATGPKHLVKKLT 295 + G + AE K E+ SA EI + P+ + Sbjct: 208 SLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN-S 253 Query: 296 RAKFESLTEDL----------VEETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQE 345 E+L E L +E+ ++ S I + G +V+ GG + + Sbjct: 254 NEILEALQEPLTGIVSAVMVALEQCPPELASDISERG--------MVLTGGGALLRNLDR 305 Query: 346 RVKAFINKELNKSVNPDEVVAVGA 369 + + + +P VA G Sbjct: 306 LLMEETGIPVVVAEDPLTCVARGG 329
>FLAGELLIN#Flagellin signature. Length = 507 Score = 286 bits (732), Expect = 7e-93 Identities = 130/519 (25%), Positives = 221/519 (42%), Gaps = 18/519 (3%) Query: 2 SFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANL 61 + INTN +L + ++ LSS++E+LSSGLRIN A DD++G AIA+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLE 121 QA RNAND I + QT + A++E L ++ +VQA + +++Q +IQ+ LE Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSG 181 E+D ++N T FNG ++LS + Q+GA T+ + +G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVN---- 175 Query: 182 EGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVR 241 + ++ +FK V G + Y + + +G + + V Sbjct: 176 -----GPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN 230 Query: 242 ASYNVMATG----GTPVQSGTVRELTINGVEIGTVNDVHKNDADGRLTNAINSVKDRTGV 297 A+ + T T V + T E + K +G T V Sbjct: 231 AANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGD-TFDYKGVTFTIDT 289 Query: 298 EASLDIQGRINLHSIDGRAISVHAASASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARD 357 + D G+++ +I+G +++ A + S D + Sbjct: 290 KTGNDGNGKVST-TINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 358 IIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAG 417 S ++ +G ++ TVN + + AG + + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 418 --VTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRD 475 + K + DSA +++D +RS +G++Q + I N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 476 VDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 D+A E +N SK IL Q+G+ +AQAN V QNVL LL+ Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.014 Identities = 38/251 (15%), Positives = 75/251 (29%), Gaps = 32/251 (12%) Query: 95 VAETQK-EAENARDRANKSGIELGQEKQKTSNIETNNQIKVEQEKQKTEQEKKEAENARD 153 VAE K E++ + Q ++ E + +K + + Q E + + Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAK--EAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 154 RANKSGIELE-QEKQKTIKEQKDFIKYAEQNCQEKHNQFFIKKAGIKGGIGIEVEAECKT 212 K +E +EK K E+ + K Q E Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ---------------SETVQPQ 1142 Query: 213 PKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYRP 272 +PA+ N + N K+P+SQ + A Q E+ ++ + + Sbjct: 1143 AEPARENDPTV------NIKEPQSQTNTTADT----EQPAKETSSNVEQPVTESTTVNTG 1192 Query: 273 SSIAYLELDPRDFNATEEWQKENLKIRSKAQAKMLEMRNPQAHFPTSQSLSILQKIFADI 332 +S+ +P + N + +K + + H + S + + Sbjct: 1193 NSV---VENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Query: 333 NKEIKTVANTE 343 T N Sbjct: 1250 CDLTSTNTNAV 1260
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.4 bits (94), Expect = 1e-05 Identities = 27/173 (15%), Positives = 65/173 (37%), Gaps = 8/173 (4%) Query: 130 EQEKQKANKSGIELEQERQKTEQEKQKANKSEIELEQERQ--KTNKSGIELANSQIKAEQ 187 E KQ++ + + T Q ++ A +++ ++ Q + +SG E +Q + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 188 ERQKTE-QEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQLFIKK 246 E E +EK K + + + ++ ++ EQ + ++ + +E + IK+ Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQ----EQSETVQPQAEPARENDPTVNIKE 1157 Query: 247 ARIKTGITTGIAIEIEAECKTPKPAKTNQTPTQPKHLPNPKQPRSQRGSKAQE 299 + +T T + + T T + + P + + Q Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSV-VENPENTTPATTQP 1209 Score = 33.9 bits (77), Expect = 0.001 Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 4/157 (2%) Query: 143 LEQERQKTEQEKQKANKSEIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKS 202 ++ T Q S +E + +++ + +E E KQ++ Sbjct: 992 VDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTV 1051 Query: 203 EIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQLFIKKARIKTGITTGIAIEIE 262 E + + T + + + + T+ N + G + +T T + E + Sbjct: 1052 EKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Query: 263 AECKTPKPAKTNQTPTQPKHLPNPKQPRSQRGSKAQE 299 A+ +T K + + +Q PKQ +S+ E Sbjct: 1112 AKVETEKTQEVPKVTSQVS----PKQEQSETVQPQAE 1144
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 294 bits (755), Expect = 3e-92 Identities = 104/454 (22%), Positives = 185/454 (40%), Gaps = 71/454 (15%) Query: 388 DLEHMNSFKEGEILVTDN-TDPDWEPCMKK-ASAVITNRGGRTCHAAIVAREIGVPAIVG 445 + + + E +++ ++ T D K+ T+ GGRT H+AI++R + +PA+VG Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 446 VSGATDSLYTGMEITVSCAEGE---------EGYVYAGIYEHEIERVELSNMQETQT--- 493 T+ + G + V EG E ++ E + + + Sbjct: 206 TKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTK 265 Query: 494 -----KIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEK 548 ++ NIG P+ G+GL R E + +++ + P Sbjct: 266 DGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQ-LPTE------------- 311 Query: 549 NEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEP 608 E Y K++ + KPV++RT D ++ + L P Sbjct: 312 ---EEQFEAY--------KEVVQ-------RMDGKPVVIRTLDIGGDKELSYL----QLP 349 Query: 609 NEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVL 668 E NP LG+R + F + AL N+KVM P + T+EE ++ Sbjct: 350 KELNPFLGFRAIRLCLE--KQDIFRTQLRALL---RASTYGNLKVMFPMIATLEELRQAK 404 Query: 669 EILRKNNLESGKNG------LEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGV 722 I+++ + G +E+ IM E+P + A+ F D FSIG+NDL Q T+ Sbjct: 405 AIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAA 464 Query: 723 DRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITS 782 DR +E VS+++ + A+L++ I+A K+ G+CG+ D L+ G+ Sbjct: 465 DRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLGLGLDE 523 Query: 783 ISLNPDSVIPTWNAVAKLE----KELKDHSLTAR 812 S++ S++P + + KL K +L Sbjct: 524 FSMSATSILPARSQLLKLSKEELKPFAQKALMLD 557
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 150 bits (379), Expect = 2e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.014 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSTLFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 364 bits (936), Expect = e-127 Identities = 117/345 (33%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AIVSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMTLSLKNPNFKNAIQ 186 A++ SA + NGA IERE+ + L L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERLSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPIVVTSQDITLKITKEP--------LNDSKNTQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.026 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.008 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEEF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 557 bits (1436), Expect = 0.0 Identities = 179/582 (30%), Positives = 294/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKVSKDD-TILIPRDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ + I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL + + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPVIDNATLSEKIMRKTQKILGSFTPLIKYVLVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 351 bits (902), Expect = e-123 Identities = 122/338 (36%), Positives = 209/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDIV LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.2 bits (68), Expect = 0.010 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEA 102 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEK 223
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 112 bits (282), Expect = 3e-28 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 9 NIRNFSIIAHIDHGKSTLADCLISECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 65 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 66 RLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 125 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 126 DNHLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSGANEVS 167 + + INKID ++ V QDI++ + + +V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 159 Score = 83.4 bits (206), Expect = 7e-19 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 17/215 (7%) Query: 167 SAKAKLGIKDLLEKIITTIPAPSGDPSTPLKALIYDSWFDNYLGALALVRIMDGSINTEQ 226 SAK +GI +L+E I + + + L ++ + LA +R+ G ++ Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 227 EILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDA 283 + + K + +Y + GEI I+ L L SV +GDT Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL- 333 Query: 284 KNPTSKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFG 343 P + IE P + + P + + E L +ALL++ +D L + +S+ Sbjct: 334 --PQRERIEN---PLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---E 385 Query: 344 FRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVY 378 + FLG + MEV L+ ++ + + PTV+Y Sbjct: 386 IILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 405 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 464 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 465 LKSCTKGYASFDYEP 479 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.009 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.6 bits (95), Expect = 8e-06 Identities = 58/315 (18%), Positives = 104/315 (33%), Gaps = 67/315 (21%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFLLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDRKTTPKTTIKEETQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 263 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 LKIFLTNSSSFSPK-------ESSFIMLLALSYFIFLQPLCG---MLADKIKRTQMLMVF 313 IF+ + + ++ M+ L I + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 314 AIAGLIVTPVVFYGI 328 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 26.0 bits (57), Expect = 0.006 Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 1 MKTIRNSVFIGASLLGGCASVET 23 MK +++ +G +LL GCAS T Sbjct: 1 MKLRLSALALGTTLLVGCASSGT 23
>SECA#SecA protein signature. Length = 901 Score = 30.6 bits (69), Expect = 0.024 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Query: 67 IYTTNYNELLIIDG-QQRLTTITLLFIALRDYLNDEDEFLEKFSRQKIQNRYLINSDEKG 125 I + E+ I G Q+RL L + + ++L+ E E E+ R++I + + K Sbjct: 692 IPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKE 751 Query: 126 DKKFKLFLSESDRDTLLSLIDKNKRE 151 + + ++ +L +D +E Sbjct: 752 EVVGAEMMRHFEKGVMLQTLDSLWKE 777
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.047 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 51 TPKNILMIGSTGVGKTEIARRI---AKIMELPFVKV 83 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.7 bits (67), Expect = 0.003 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 52 LQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIFSALFCGSLFLSSPLLGVIALVALS 111 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 112 SSLL 115 S ++ Sbjct: 101 SHVV 104
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 49.2 bits (117), Expect = 5e-09 Identities = 24/57 (42%), Positives = 28/57 (49%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 139 P P +P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 44.6 bits (105), Expect = 1e-07 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 84 PKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEE 143 P + P +P P P P P P E P KPKPKP+PK K V+KV+E Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVKKVQE 108 Query: 144 KKIVEEKKEE 153 + + K E Sbjct: 109 QPKRDVKPVE 118 Score = 39.2 bits (91), Expect = 9e-06 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 38/218 (17%) Query: 98 PTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKIVEEKKEEKKIV 157 P PP +P +P EP+P+P+P P+ P +E +V EK + K Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-------------KEAPVVIEKPKPKPKP 98 Query: 158 EQKVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEVAPPRKENNKGLDNQTRRDIDELYGE 217 + K +KV+++ + KPV E P N T + Sbjct: 99 KPKPVKKVQEQPKRDVKPV--------------ESRPASPFENTAPARLTSSTATAATSK 144 Query: 218 EFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKI 277 + + + RN + YP A L +G V+F + P+G + +++I Sbjct: 145 PVTSVASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQI 193 Query: 278 IIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 315 + M + ++ + +P + ++ I + Sbjct: 194 LSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 38.0 bits (88), Expect = 2e-05 Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 74 QDPNKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKK 127 Q +P P P P PKP KPKP+P K + +PK+ Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 33.0 bits (75), Expect = 0.001 Identities = 14/56 (25%), Positives = 22/56 (39%) Query: 74 QDPNKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPN 129 +P P+P P++ P P P PKP K + +PK +P + Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 31.1 bits (70), Expect = 0.005 Identities = 12/52 (23%), Positives = 16/52 (30%) Query: 75 DPNKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPK 126 +P P + P P P P K E+PK + KP Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 123
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 28.6 bits (63), Expect = 0.017 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 11/112 (9%) Query: 25 NQTTELHHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLAL-----ASLEEVK 79 N+ E+ K E A ++ + T QI + K P+ +L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 80 EIIQSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLEGVGQKTANVV 131 E + + +++ + AQKV+ G+ PS + ++++ + V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.6 bits (121), Expect = 2e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIRVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLESYEFT 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 31.3 bits (71), Expect = 0.003 Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 21/150 (14%) Query: 70 QAQSDSTEQQLIFAKKQYQRYSKIGGAVDKNTLESYEFTYRRLESDYAYSIAVLNKTILR 129 +++ S +++ + ++ +I + + T T +++ +++R Sbjct: 279 ESEILSAKEEYQLVTQLFKN--EILDKLRQTTDNIGLLTLELAKNE-----ERQQASVIR 331 Query: 130 APFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG-------D 180 AP + + GV L+ +V L + +K I + VG + Sbjct: 332 APVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVE 391 Query: 181 TYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + Y+ G K+ I D+ Sbjct: 392 AFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 893 bits (2309), Expect = 0.0 Identities = 287/1040 (27%), Positives = 518/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPKHS-------RFYVWSEPFFKALESRYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 ISIAVVLVFVGSLFVASKLGMDFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHDEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEHQLGQFELMGALRKELRS 631 + + E FT + G QN FV LKP +ER + ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENS-AEAVIHRAKMELGK 656 Query: 632 MPEAKGLDTINLSEVSLIGGGGDSSPFQTFVFSHSQEAVDKSVENLKKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + + L + + + Sbjct: 657 IRDGFVI-PFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 281 bits (719), Expect = 1e-78 Identities = 108/397 (27%), Positives = 184/397 (46%), Gaps = 14/397 (3%) Query: 2797 AGNNSILWLNELFVAKGGNPLFAPYYLQDNPTEHIVTLMKDITSALGMLSKPNLKNNSTD 2856 +G L L + + +A + I + T+ L ++ K + Sbjct: 904 SGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQ 962 Query: 2857 ALQLNTYMQQMSRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKL 2916 L L+ M SRL LS + F++RL +LK+QRFA + +A +V+ +++ + + Sbjct: 963 TLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEK 1021 Query: 2917 KNNLWATGVGGVSFVENGTGTLYGVNVGYDRFIKG---VIVGGYAAYGYSGFYER--ITN 2971 N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + N Sbjct: 1022 PTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLN 1081 Query: 2972 SKSDNVDVGLYARAFIKKSELTFSVNETWGANKNQISSADTLLSMINQSYQYNTWTTNAK 3031 S ++N + G+Y+R F + E F G++++ ++ LL +NQSY Y ++ + Sbjct: 1082 SGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATR 1141 Query: 3032 VNYGYDFMFKNKSIILKPQIGLRYYYIGMTGLEGVMNNALYNQFKANADPSKKSVLTIDL 3091 +YGYDF F +++LKP +G+ Y ++G T + + S + + Sbjct: 1142 ASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASA 1197 Query: 3092 ALENRHYFNTNSYFYAIGGVGRDLLVNSMGDKLVRFIGNNTLSYRKGELYNTFASITTGG 3151 +E R+Y+ SYFY GV ++ N V + R NT A + GG Sbjct: 1198 NVEARYYYGDTSYFYMNAGVLQEFA-NFGSSNAVSLNTFKVNATRNP--LNTHARVMMGG 1254 Query: 3152 EVRLFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3188 E++L K + N G L + + N+GMR +F Sbjct: 1255 ELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 37.3 bits (86), Expect = 0.001 Identities = 75/478 (15%), Positives = 135/478 (28%), Gaps = 107/478 (22%) Query: 82 SVNENNSNKSYYVSPLRTWAGGNRNFTQNYNNSQLYIGTKNASSTPNNSSVWFGEKGYVG 141 V+ N+ +Y +S L + GG+ N + L +G N +S + K Sbjct: 133 EVDMQNAVGTYNLSGLINFTGGD--LDVNMQKATLRLGQFNGNS-------FTSYKDSAD 183 Query: 142 FITGV-FKAKDIFITGAVGSGNEWKTGGG-----AILVFESSNEL----NANGAYFQNNK 191 T V F AK+I I + N +G G +L ++S + NA + + Sbjct: 184 RTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYDGAT 243 Query: 192 AGTQTSWINLISN--------------------NSVNLTNTDFGNQTPNGGFNAMGRKIT 231 ++ + L+ N N+ +T N G NA + Sbjct: 244 LNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNA-AQAGI 302 Query: 232 YNGGIVNGGNFGFDNVDSNGTTTISGVTFNNNGALTYKGGNGIGGSITFTNSNINHYKLN 291 + G S G I+ G K + + N Sbjct: 303 IASNKTHIGTLDLWQ--SAGLNIIA----PPEGGYKDKPNDKPSNTTQNNAKNDKQESSQ 356 Query: 292 LNANSVTFNNSALGSMPN------------GNANTIGNAYILNAS------NITFNNLTF 333 N+N+ N G NT+ N +N + F Sbjct: 357 NNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLT 416 Query: 334 NGGWFVFNRSDANVNFQGTATINNPTSPFVNMTGKVTINPNAIFNIQNYTPSIGNAYTLF 393 + +N A+ + N+TG +T++ N Q ++ + F Sbjct: 417 TNAAHLHIGKGG-INLSNQAS--GRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANF 473 Query: 394 SMK------------NGNITYNNV------------------NNLWNIIRL--------- 414 K N +I+ N +N + Sbjct: 474 EFKAGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNI 533 Query: 415 -KNTQATKDNSKNATSNNNTHTYYVTYNLGDTLYHFRQIFSPDSIVLQSVYYGANNIY 471 K A+ + + + N ++G+ + I S I + G +IY Sbjct: 534 NKLITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIY 591 Score = 32.7 bits (74), Expect = 0.029 Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 5/100 (5%) Query: 700 SYSFDGINNTFNEDKFNGGSFNFNHAEQTDAFNNNSFNGGSFSFNAKQVDFNHNSFNGGV 759 SYS + E FN + ++A Q +N + G+ + N + G Sbjct: 272 SYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGG 330 Query: 760 FNF---NNTPKVSFTDDIFNVNNQFKING-AQTTFTFNKG 795 + + + + + + N Q N Sbjct: 331 YKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSA 370
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.0 bits (67), Expect = 0.001 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 16 KRKRLLTELAELEAEIKVSSERRSSFNISLSPS 48 R +L ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 120 bits (303), Expect = 5e-36 Identities = 48/117 (41%), Positives = 74/117 (63%), Gaps = 2/117 (1%) Query: 1 MRNIEARK-EKGDKKAKLAFEMCTYRIKKYIGAYMAVLKKVDAILFTGGLGENYSALRES 59 R++E + GDK+A+LA + YR+KK IG+Y A + VD I+FT G+GEN +RE Sbjct: 283 FRDLEDAAFKNGDKRAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREF 342 Query: 60 VCEGLENLGIVLNKTINNEPGSGLVNLSQHDAKIQVLRIPTDKELEIALQTKKVLEK 116 + +GLE LG L+K N G + +S D+K+ V+ +PT++E IA T+K++E Sbjct: 343 ILDGLEFLGFKLDKEKNKVRGEEAI-ISTADSKVNVMVVPTNEEYMIAKDTEKIVES 398
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 84.1 bits (208), Expect = 2e-23 Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 2 DTSMGLTPLEGLIMGTRCGDIDPTVVEYTAQCADKSLEEVMKMLNHESGLKGICG 56 DTSMG TPLEGL MGTR G IDP+++ Y + + S EEV+ +LN +SG+ GI G Sbjct: 224 DTSMGFTPLEGLAMGTRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISG 278
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.1 bits (106), Expect = 7e-07 Identities = 45/231 (19%), Positives = 77/231 (33%), Gaps = 10/231 (4%) Query: 281 KRDKTLSKKKSEKTPTKTQTTAPSTTPENAPKIPLKTPPLMPLIGANPPPNDNAPTPLEK 340 KR++T+ TP Q PS N + P+ P A TP E Sbjct: 987 KRNQTVDTTNIT-TPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA---------TPSET 1036 Query: 341 EETTKEASDNKEKTKETNNSAQSAQNAQASDKTSENKSVTPKETIKHFTQQLKQEIQEYK 400 ET E S + KT E N + AQ + E KS T + Q E +E + Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 401 PPMSRISMDLFPKELGKVEVVIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFE 460 ++ + + +E KVE + + V +T + + + + + Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIK 1156 Query: 461 GVDLSFSQDSSKEQEKEPFKELFKEQELTPLKENALKSYQENTDHENQETS 511 + + EQ + ++ N S EN ++ T+ Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Score = 29.3 bits (65), Expect = 0.047 Identities = 39/231 (16%), Positives = 72/231 (31%), Gaps = 4/231 (1%) Query: 173 THNAKESKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASD-QLALKTTQTPINNTLA 231 T + T +IQ N I P A+ + + + Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 232 KNDAKNTANLSSVLQSLEKKEPQNKEHANPLNNEKKTPPLKEA-LQMNAIKRDKTLSKKK 290 + A ++ KE ++ AN NE + Q K T+ K++ Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 291 SEKTPTKTQTTAPSTTPENAPKIPLKTPPLMPLIGANPPPNDNAPTPLEKEETTKEASDN 350 K T+ P T + +PK ++ + P + + +T A D Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPK-QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTA-DT 1168 Query: 351 KEKTKETNNSAQSAQNAQASDKTSENKSVTPKETIKHFTQQLKQEIQEYKP 401 ++ KET+++ + + T + P+ T TQ KP Sbjct: 1169 EQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.3 bits (81), Expect = 7e-04 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 2 NDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGY 34 + + NA SG+ Q +++ SNNI++ N GY Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGY 33 Score = 33.0 bits (75), Expect = 0.003 Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 557 IRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLK 604 + ++ S VN NL Q+ Y NA+ + + I+++ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 427 bits (1098), Expect = e-146 Identities = 160/577 (27%), Positives = 274/577 (47%), Gaps = 75/577 (12%) Query: 10 ILAIALSFLFIALYSYFFQKPNKTTTQTTKQETTNNHTATSPNAPNAQNFGTTQAISQEN 69 +L IAL F+ ++ Q + + + T T T+ + Q A Q Sbjct: 7 LLVIALLFVSFMIW----QAWEQDKNPQPQAQQTTQTTTTAAGSAADQG---VPASGQGK 59 Query: 70 LLSTISFEHARIEIDSLGR--IKQVYLKDKKYLTPKQ-----KGFLEHV----SHLFNPK 118 L+ ++ + + I++ G + + K L Q + + + S L Sbjct: 60 LI-SVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRD 118 Query: 119 ANPQPPLKELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDL 176 P PL +K A+ G NE V D Sbjct: 119 GPDNPANGPRPLYNVEK---------------DAY-------VLAEGQNELQVPMTYTDA 156 Query: 177 NTLTIIKTLTFYDDLHYDLKIAFKSSN--------NIIPSYVITNGYRPVADLDS----- 223 T KT Y + + + N + + P D S Sbjct: 157 AGNTFTKTFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFAL 215 Query: 224 YTFSGVLLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDSQGFEAL 280 +TF G D+K EK + D + + S +++ + +YF T + G Sbjct: 216 HTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTNNF 274 Query: 281 IDSEIGTKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVIEYGL 329 + +G N + I K++ N ++GP+ + A++P L ++YG Sbjct: 275 YTANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGW 332 Query: 330 ITFFAKGVFVLLDYLYQFAGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKELAPKMKE 389 + F ++ +F LL +++ F GNWG++II++T IVR I+YPL+ SM K++ L PK++ Sbjct: 333 LWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQA 392 Query: 390 LQEKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSEWI 449 ++E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + + Sbjct: 393 MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFA 452 Query: 450 LWIHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFTIFLITFPAG 509 LWIHDLS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT+F + FP+G Sbjct: 453 LWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSG 512 Query: 510 LVLYWTTNNILSVLQQLIINKVLENKKRMHAQNKKEN 546 LVLY+ +N+++++QQ +I + LE K+ +H++ KK++ Sbjct: 513 LVLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKKS 548
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 33.3 bits (76), Expect = 0.002 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 29/136 (21%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEEIIELQ------------ 259 + ++ +AGK++L ++L A L S KGTTR D +E Q Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTL--LERQRGITIQTGITSF 63 Query: 260 ---GHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDT 316 KV +IDT G + ++ R SL L D + + ++ + L Sbjct: 64 QWENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHA 115 Query: 317 LNRAKKPCIVVLNKND 332 L + P I +NK D Sbjct: 116 LRKMGIPTIFFINKID 131
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.4 bits (68), Expect = 0.009 Identities = 14/60 (23%), Positives = 22/60 (36%) Query: 155 SKSMGDLLAKAMPIERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNNSDTEIKNAL 214 + + D L P + +A + G E + YQ + FD + IKN L Sbjct: 536 AVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQL 595
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 294 bits (753), Expect = e-105 Identities = 173/175 (98%), Positives = 174/175 (99%) Query: 1 MKNQVKKILGMSVIATMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+A MVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.8 bits (64), Expect = 0.011 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 35.7 bits (82), Expect = 2e-04 Identities = 28/183 (15%), Positives = 77/183 (42%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQATVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EVDASKKFAKMQETLDFIAERL-KNVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + + R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQVY 277 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 32.6 bits (74), Expect = 0.002 Identities = 29/183 (15%), Positives = 73/183 (39%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EVDASKKLAKMQETLDFIAERL-KNVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 217 + A LA+ ++ + + R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLSPEDVLNNPKFATIKAIKNKQVY 275 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270