>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.2 bits (146), Expect = 3e-12 Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 15/121 (12%) Query: 199 VLLADDSPSVLKTMQMILDKLGVKHIDFINGKTLLEHLFNPTTDVSNIGLIITDLEMPEA 258 +L+ADD ++ + L + G N TL + D L++TD+ MP+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGD-----LVVTDVVMPDE 60 Query: 259 SGFEVIKQVKNNPLTSKIPIVVNSSMSG-SSNEDMARSLK--ADDFISKSNPKDIQRVVK 315 + F+++ ++K +P++V MS ++ ++ + A D++ K P D+ ++ Sbjct: 61 NAFDLLPRIKK--ARPDLPVLV---MSAQNTFMTAIKASEKGAYDYLPK--PFDLTELIG 113 Query: 316 Q 316 Sbjct: 114 I 114
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.4 bits (68), Expect = 0.005 Identities = 34/180 (18%), Positives = 56/180 (31%) Query: 34 ELVEENKALTTEKERLERENKNLTADKENLTKEKTELQKQVNELKNSKQVLENEKADWLR 93 +L NKAL + L E N K +E ++ EL+ K LE + Sbjct: 75 DLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMN 134 Query: 94 EKENLTKDRENLTKEKTELTEKNKVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQV 153 + + L EK L + L E + + + + L+ + Sbjct: 135 FSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAE 194 Query: 154 LENEKADLTNENTKLKTDKTDLTEKNQRLTTEKTELNNKITGLATEKERLAADKENLTKE 213 LE N +T L + L K +L + G +A + L E Sbjct: 195 LEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAE 254
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 43.1 bits (101), Expect = 1e-06 Identities = 45/241 (18%), Positives = 92/241 (38%) Query: 12 SQIREELEARISELEDENTELLREREYLAAETSELKDANDQLRQKNDKLFITKDKLTKEN 71 + +LE + + +T + + L AE + L L + + + + Sbjct: 119 EARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKI 178 Query: 72 TELFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTRLLAARDRLT 131 L AE +L + + LE + + + + + L+ EK LA L A + Sbjct: 179 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 238 Query: 132 EEKRELTTEKERLKRENTELTHKITELTKENKALTTENDKLNHQVTALTNERDSLEQERA 191 + + + L+ E L + EL K + + + ++ L E+ +LE E+A Sbjct: 239 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKA 298 Query: 192 RLQDAHGFLEKRCTNLEKENQRLTDKLKQLESAQKSLENTNNQLRQALENSNVQLAQAKE 251 L+ L +L ++ + KQLE+ + LE N + ++ L ++E Sbjct: 299 DLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASRE 358 Query: 252 K 252 Sbjct: 359 A 359 Score = 42.7 bits (100), Expect = 1e-06 Identities = 48/270 (17%), Positives = 88/270 (32%), Gaps = 14/270 (5%) Query: 16 EELEARISELEDEN--------------TELLREREYLAAETSELKDANDQLRQKNDKLF 61 + L+ EL +E +E + + L A ++L+ A + + Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADS 140 Query: 62 ITKDKLTKENTELFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENT 121 L E L A L + G + + L EKA L+ + L K Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 200 Query: 122 RLLAARDRLTEEKRELTTEKERLKRENTELTHKITELTKENKALTTENDKLNHQVTALTN 181 + + + + L EK L +L + + A + + L + AL Sbjct: 201 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 260 Query: 182 ERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDKLKQLESAQKSLENTNNQLRQALEN 241 + LE+ + + LE E L + LE + L LR+ L+ Sbjct: 261 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDA 320 Query: 242 SNVQLAQAKEKIAIEKSELEREIARLKSLE 271 S Q + + + + + A +SL Sbjct: 321 SREAKKQLEAEHQKLEEQNKISEASRQSLR 350 Score = 39.3 bits (91), Expect = 2e-05 Identities = 60/312 (19%), Positives = 125/312 (40%), Gaps = 5/312 (1%) Query: 15 REELEARISELEDENTELLREREYLAAETSELKDANDQLRQKNDKLFITKDKLTKENTEL 74 + +LE + + +T + + L AE + L+ +L + + + + L Sbjct: 157 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 75 FAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTRLLAARDRLTEEK 134 AE +L+ + + LE + + + + + L+ EK L L A + Sbjct: 217 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 276 Query: 135 RELTTEKERLKRENTELTHKITELTKENKALTTENDKLNHQVTALTNERDSLEQERARLQ 194 + + + L+ E L + +L +++ L L + A + LE E +L+ Sbjct: 277 TADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLE 336 Query: 195 DAHGFLEKRCTNLEKENQRLTDKLKQLESAQKSLENTNNQLRQALENSNVQLAQAKEKIA 254 + + E +L ++ + KQLE+ + LE N + ++ L ++E Sbjct: 337 EQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKK 396 Query: 255 IEKSELEREIARLKSLEGMEAKSDLDLHNRRLASANEDLKRQNRKLEEENIALKERVDGL 314 + LE ++L +LE + + + ++ KLE E ALKE++ Sbjct: 397 QVEKALEEANSKLAALEKLNKELE-----ESKKLTEKEKAELQAKLEAEAKALKEKLAKQ 451 Query: 315 NEQLSKLQPQKP 326 E+L+KL+ K Sbjct: 452 AEELAKLRAGKA 463 Score = 34.7 bits (79), Expect = 5e-04 Identities = 32/231 (13%), Positives = 78/231 (33%), Gaps = 2/231 (0%) Query: 97 QNNNKLTKEKAELKTEKDILAKENTRLLAARDRLTEEKRELTTEKERLKRENTELTHKIT 156 N + + + + + L + +L+ + LK N ELT +++ Sbjct: 36 NTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELS 95 Query: 157 ELTKENKALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTD 216 ++ + + ++ L + LE+ + + LE E L Sbjct: 96 NAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAA 155 Query: 217 KLKQLESAQKSLENTNNQLRQALENSNVQLAQAKEKIAIEKSELEREIARLKSLEGMEAK 276 + LE A + N + ++ + A + + A + LE + + Sbjct: 156 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADS--AKI 213 Query: 277 SDLDLHNRRLASANEDLKRQNRKLEEENIALKERVDGLNEQLSKLQPQKPQ 327 L+ LA+ DL++ + A ++ L + + L+ ++ + Sbjct: 214 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAE 264
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1045 bits (2703), Expect = 0.0 Identities = 354/569 (62%), Positives = 443/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGNAS +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 29.6 bits (66), Expect = 0.010 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 8/92 (8%) Query: 99 KQESENSMPIQTDQAQMEMKTTEEKQESQKELKAVEPIPMSTQKESQAVAKKETPHKKPK 158 Q E P Q M E ++ + + + E + + + Sbjct: 33 HQVIELPAPAQPISVTMVTPADLEPPQAVQP---PPEPVVEPEPEPEPIPEPPKEAPVVI 89 Query: 159 VAPKDKEAHKDKAKHAAKEPKVKKEARKEVSK 190 PK K K K KV+++ +++V Sbjct: 90 EKPKPKPKPKPK-----PVKKVQEQPKRDVKP 116
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 62.0 bits (150), Expect = 2e-13 Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKSLYNNIKQDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + I++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSNGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.4 bits (71), Expect = 0.005 Identities = 37/207 (17%), Positives = 83/207 (40%), Gaps = 1/207 (0%) Query: 23 VLIPLLILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFL 82 V +P + + P + + A ++ + G+ + LS + ++ + + + Sbjct: 35 VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV 94 Query: 83 VCYFDSIPFFWLWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVF 142 + + F L + RFI G ++A LV + Y+ + + GLI S V +G Sbjct: 95 IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 143 SGFVLPWISSYNIKWAWIFLGGSCLIAFILSLVGLKTRSLRKKSVKKEESAFKIPFHLWL 202 + I+ Y I W+++ L I + L+ L + +R K + + + Sbjct: 155 GPAIGGMIAHY-IHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 203 LLISCALNAIGFLPHTLFWVDYLIRHL 229 ++ +I FL ++ ++H+ Sbjct: 214 FMLFTTSYSISFLIVSVLSFLIFVKHI 240
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 62.8 bits (152), Expect = 2e-12 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 17/250 (6%) Query: 152 KEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAE-NPQDEEK 210 NNEE P ++ E + + + EK +Q+ E Q+ E Sbjct: 1009 SVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREV 1068 Query: 211 PKDDETQGSVEPPKDEEVSKELETQEELETPKEETQ---EQEPIKEETQEIKEEKQEKTQ 267 K+ ++ +E ET+E T +ET ++E K ET++ +E + +Q Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 268 DSPSAQELEAMQELVKEIQENSNDQENKKETQETQENTETPQDIETQELEIPKEEETQEV 327 SP ++ E +Q + +EN K+ +T +T Q + + + Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 328 AEKTQVQGLEKEEIAETPQEKEIQETQDETPQELEAQDEKLQENETPKDESMQESAQNLQ 387 + E P+ TQ E + + S++ N++ Sbjct: 1189 VNTG-------NSVVENPENTTPATTQPTVNSESS------NKPKNRHRRSVRSVPHNVE 1235 Query: 388 DKETPQEETQ 397 T + Sbjct: 1236 PATTSSNDRS 1245 Score = 55.1 bits (132), Expect = 6e-10 Identities = 55/298 (18%), Positives = 110/298 (36%), Gaps = 12/298 (4%) Query: 195 EKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQEQEPIKEE 254 E +K+ + + P + + P +EE+++ E P ++ E + E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 255 TQEIKEEKQEKTQDS--PSAQELEAMQELVKEIQENSNDQENKKETQETQENTETPQDIE 312 +++ + ++ QD+ +AQ E +E ++ N+ E + ET + T+T + E Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET-KETQTTETKE 1102 Query: 313 TQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQDETPQELEAQDEKLQENE 372 T +E KEE+ + EKTQ +++ ++ E + Q E +E + + Sbjct: 1103 TATVE--KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQS 1160 Query: 373 TPKDESMQESAQNLQDKETPQEETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPN 432 + E Q T+ + + E P +N + P Sbjct: 1161 QTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Query: 433 NENDTETPKESDIKAPQEKEESDKTSSPLELRLNLQDLLKSLNQESLKSLLENKTLSI 490 N + +++ E TSS + L DL S N ++ S K + Sbjct: 1221 NRHRRS------VRSVPHNVEPATTSSNDRSTVALCDLT-STNTNAVLSDARAKAQFV 1271 Score = 43.9 bits (103), Expect = 1e-06 Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 13/179 (7%) Query: 142 ENLGDLEALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEV 201 E +AKE +N + T + + +E Q KE +EE + + ++ Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT 1119 Query: 202 AENPQ-------DEEKPKDDETQGSVEPPKD-----EEVSKELETQEELETPKEETQEQE 249 E P+ +E+ + + Q D +E + T + E P +ET Sbjct: 1120 QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS-SN 1178 Query: 250 PIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQENTETP 308 + T+ ++P Q V N +++ + N E Sbjct: 1179 VEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237 Score = 32.3 bits (73), Expect = 0.005 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 6/120 (5%) Query: 111 QKKLGSNASELEPSQNLDPTQEILETNWDELENLGDLEALAKEEPNNEEQLLPT-----L 165 Q++ + + EP++ DPT I E + D E AKE +N EQ + Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQ-SQTNTTADTEQPAKETSSNVEQPVTESTTVNT 1191 Query: 166 NEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKD 225 E P+ + E + K + ++ V P + E S D Sbjct: 1192 GNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCD 1251
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 195 bits (496), Expect = 1e-64 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIVVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TIV+ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKKEAEYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + E S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.009 Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 30 VVALLGESGAGKSTILRILAGLEAVSSGYIEA 61 V L G G GKST++ L GL+ S + + Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 198 bits (504), Expect = 2e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLEKERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LE++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVALAG--FNAMDV-GDSVVDPTNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV L V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 278 bits (711), Expect = 3e-96 Identities = 63/275 (22%), Positives = 120/275 (43%), Gaps = 44/275 (16%) Query: 13 YSKMLVALGLSSVLIGCAMNPSAETKKPNDAKNQQPVQTHERMTTSSEHVTPLDFNYPVH 72 + K L+ + ++L+GC S + N+ + H +SE V LD Sbjct: 12 WKKCLLGASVVALLVGC----SPHIIETNEVAL--KLNYH----PASEKVQALD------ 55 Query: 73 IVQAPQNHHVVGILMPRIQVSDNL-KPYIDKFQDALINQIQTIFEKRGYQVLRF--QDEK 129 + +L P Q SDN+ K Y +KF++ +++ I + +GY+V+ D+ Sbjct: 56 --------EKILLLRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQGYKVINVDSSDKD 107 Query: 130 ALNVQDKKKIFSVLDLKGWVGILEDLKMNLKDPNSPNL--DTLVDQ------SSGSVWFN 181 + KK+ + + + G + + D K ++ + P L T +D+ +G V Sbjct: 108 DFSFAQKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVKVT 167 Query: 182 FYEPESNRVVHDFAVEVGTF---QAITYTYTSTNNASGGFNSSKSVIHENLDKNREDAIH 238 EP S + F +++ + T S++ SGG S+ N DAI Sbjct: 168 ILEPMSGESLDSFTMDLSELDIQEKFLKTTHSSH--SGGLVSTMV----KGTDNSNDAIK 221 Query: 239 KILNRMYAVVMKKAVTELTKENIAKYRDAIDRMKG 273 LN+++A +M++ +LT++N+ Y+ +KG Sbjct: 222 SALNKIFANIMQEIDKKLTQKNLESYQKDAKELKG 256
>PF03944#delta endotoxin Length = 633 Score = 31.2 bits (70), Expect = 0.006 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQKYSSQFLALVPLSAKKSQNLN 161 + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.9 bits (90), Expect = 2e-04 Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 8/221 (3%) Query: 806 KAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEARKL 865 + NE + E + P A E E+V S+ + E+ E T + R++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET--TAQNREV 1068 Query: 866 LEESKKSVKAYLDC--VSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARN 923 +E+K +VKA V+++ +E + + + + E+AK + ++ Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 924 EKEKQECEKLLTPEAKKLLENQALDCLKNAK----TEAEKKRCVKDLPKDLQKKVLAKES 979 KQE + + P+A+ EN +K + T A+ ++ K+ ++++ V + Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 980 VRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKA 1020 V V +N + + + K + SV++ Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRS 1229 Score = 38.9 bits (90), Expect = 2e-04 Identities = 44/266 (16%), Positives = 94/266 (35%), Gaps = 5/266 (1%) Query: 926 EKQECEKLLTPEAKKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLD 985 E ++ + + N D E R + ++ + V + Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 986 CVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEA 1045 ++K + ++ T + R++ +EAK +VKA A++ E +E + T E Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 1046 RKLLEQEVKKSVKAYLDCVSR-ARNEKEKQECEKLLTPEARKLLENQALDCLKNAK---- 1100 + ++E K V + KQE + + P+A EN +K + Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 1101 TEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEARKLLEES 1160 T A+ ++ K+ ++++ V +V V N + + + K Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223 Query: 1161 KKSVKAYLDCVSKAKNEAEKKECEKL 1186 ++SV++ V A + + L Sbjct: 1224 RRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 35.8 bits (82), Expect = 0.002 Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 10/229 (4%) Query: 599 TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVRAYLDC 658 P ++ + + ++KT + ++ T + ++ +EAK +V+A Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 659 VSKAKNEAERKECEKLLTPEAKKLLENQALDCLKNAKTDEERKECLKDLPKDLQKKVL-- 716 A++ +E KE + T E +E + ++ KT E K + PK Q + + Sbjct: 1083 NEVAQSGSETKETQTTETKETAT-VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 717 ----AKESVRVYL--DCVSKAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVLRAR 770 A+E+ + S+ A+ ++ K + + + E +V V Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE-STTVNTGNSVVENPE 1200 Query: 771 NEKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKL 819 N + + + K ++SV++ V A + + L Sbjct: 1201 NTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 33.9 bits (77), Expect = 0.009 Identities = 33/214 (15%), Positives = 75/214 (35%), Gaps = 5/214 (2%) Query: 428 RKELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLK--QQALDCLKNAKTDEER 485 E + QE K KN + E + ++KEA +K Q + ++ +E Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 486 KECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQALDCL 545 + ++KE A + + ++ KQE + + P+A+ EN + Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155 Query: 546 KNAKTDEERKECLKNLPKDLQSDI---LAKESLKAYKDCASQAKTEAEKKECEKLLTPEA 602 K ++ + K+ S++ + + + + + + + E+ Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSES 1215 Query: 603 KKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKL 636 + + SV++ V A T + + L Sbjct: 1216 SNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 32.3 bits (73), Expect = 0.022 Identities = 25/177 (14%), Positives = 63/177 (35%), Gaps = 4/177 (2%) Query: 515 RARNEKEKQECEKLLTPEAKKLLENQALDCLKNAKTDEERKECLKNLPKD--LQSDILAK 572 + NE+ + E + P A +N+K + + E + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 573 ESLKAYKDCASQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKE 632 E+ K + E ++ T E K+ E +E K + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 633 CEKLLTPEAKKKLEEAKKSVRAYL--DCVSKAKNEAERKECEKLLTPEAKKLLENQA 687 ++ + + + E A+++ + S+ A+ ++ K + ++ + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Score = 32.0 bits (72), Expect = 0.034 Identities = 25/202 (12%), Positives = 61/202 (30%), Gaps = 4/202 (1%) Query: 1042 TPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLENQALDCLKNAKT 1101 TP E K ++ + E Q E ++ Q + ++ Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 1102 EAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEARKLLEESK 1161 E + ++K+ AK + + K+E + + P+A E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND- 1150 Query: 1162 KSVKAYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQEC 1221 + S+ A+ ++ K + + + E+ + V Sbjct: 1151 -PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG--NSVVENPENTTPATT 1207 Query: 1222 EKLLTPEARKLLEQEVKKSVKA 1243 + + E+ + ++SV++ Sbjct: 1208 QPTVNSESSNKPKNRHRRSVRS 1229 Score = 31.2 bits (70), Expect = 0.048 Identities = 31/179 (17%), Positives = 68/179 (37%), Gaps = 6/179 (3%) Query: 730 KAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVLRARNEKEKQECEKLLTPEARKL 789 + NE + E + P A E ++V + + E+ E T + R++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET--TAQNREV 1068 Query: 790 LEESKKSVKAYLDC--VSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARN 847 +E+K +VKA V+++ +E + + + + E+AK + ++ Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 848 EKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEE 906 KQE + + P+A E + S+ A+ ++ K + + + E Sbjct: 1129 VSPKQEQSETVQPQAEPAREND--PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE 1185
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 881 bits (2276), Expect = 0.0 Identities = 522/522 (100%), Positives = 522/522 (100%) Query: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 119 bits (299), Expect = 4e-35 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMVLNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + L A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.5 bits (68), Expect = 0.008 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKELVALGFKKIKTLYQRHDDKEITKEEKEFATNALREKLRNDRARVEQI 83 A+N AL+ +Y+E + K K + D KE+ +++K L ++ EQ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKK---------ALEKEKEAKEQA 158 Query: 84 QKNIEAFEKKNNSSVQKKAAKHRGLQELNEINANPLNDNPNGNSSTETKSNKDDNFDEM 142 QK A + K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 159 QK---AQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 275 bits (705), Expect = 5e-96 Identities = 112/245 (45%), Positives = 161/245 (65%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPKTPDDVSLSVLIPAFMISE 180 +KIS EA EK P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 86.6 bits (214), Expect = 3e-22 Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 10/231 (4%) Query: 2 AVITGASSGIGLECVLMLLNQGYKVYALSRHATLCVALNHALC------ECVDIDVSDSN 55 A ITGA+ GIG L +QG + A+ + + +L E DV DS Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 56 ALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQLCLPL 115 A+ E+ I + D+L+N AG G + EE + FSVN + + Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 116 LKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPV 175 + ++ I + S V + Y++SK A ++ L LEL +N++ ++ PG Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 176 KSNWEKTAFENDERKDSVYALEVNAAKSFYSGV-YQKALNAKEVAQKIVFL 225 +++ + + + ++ + V + ++F +G+ +K ++A ++FL Sbjct: 191 ETDMQWSLWADENGAEQVIK---GSLETFKTGIPLKKLAKPSDIADAVLFL 238
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 41.0 bits (96), Expect = 9e-09 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 1 MKRHVIAFGLKIEILKK-YKRTLQAHDDLRQ-LEPLGFENTQGSVYLKD 47 + R I F L + L+K +K T + + +++ + GFE+ Q S Y Sbjct: 3 INRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSK 51
>PF01206#SirA family protein Length = 76 Score = 26.6 bits (59), Expect = 0.006 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 7/43 (16%) Query: 44 IPNLETQQAIRGALNGENLEVI-------EDFSAWANEIKKEV 79 +P L+ ++ + GE L V+ +DF +++ + E+ Sbjct: 17 LPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHEL 59
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 40.1 bits (94), Expect = 1e-05 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 12/176 (6%) Query: 211 AASIATLSNDERELGVACVDMGGETCNLTIYSGNSIRYNKYLPVGSHHLTTDL------S 264 AA+I G VD+GG T + + S N + Y+ + +G + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 265 HMLNTPFPYAEEVKIKYGDLSFESGAETPSQSVQIPTTGSDGHESHIVPLSEIQTIMRER 324 + AE +K + G S G E V+ + +EI ++E Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFKIIHRSIQDSGFE---EHLGGGVVLTGGMALMKGIKELARTHFTNYPVRLA 377 + +++ E + G+VLTGG AL++ + L T PV +A Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLM-EETGIPVVVA 318
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 99.1 bits (247), Expect = 1e-26 Identities = 40/209 (19%), Positives = 79/209 (37%), Gaps = 16/209 (7%) Query: 87 EADVLFQAERKIGDWIFSSAVFFFALALIEAIIIVCLLPLKEKVPYLVTFSNATQNFAIV 146 E D L AER + A ALA + + L PLK PY++T T +I Sbjct: 21 ERDKLAAAERS-KKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIA 79 Query: 147 QR--ADKSIRANQALVRQLVASYVNNRE--NISSIKEQNEIAHETIRLQSAFEVWDFFEK 202 + D +I ++A+ + +A+YV RE ++ +E + + + SA D + + Sbjct: 80 AKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEY----FDAVMVMSARPEQDRWSR 135 Query: 203 LVSYEH-----SIYTNINLTRKISIINIALISKTQANIEISAQLFHKEKLESEKRYRIIM 257 ++ +I N + I ++ + A + + + ++ + Sbjct: 136 FYKTDNPQSPQNILAN-RTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDAVATI 193 Query: 258 TFEFEPIEIDTKSVPLNPTGFIVTGYDVT 286 ++ + NP G+ V Y Sbjct: 194 KYKVDGTPSKEVDRFKNPLGYQVESYRAD 222
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.5 bits (66), Expect = 0.035 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 10/114 (8%) Query: 129 YEANKEGFERRITKRYDLIDRNIDRNREFFIKEIEILTHTNSLKELKEQGLEIQLTHHNE 188 + + + + + ++ NI+R + L K G E+ LT Sbjct: 290 AKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYG-EL-LT---- 343 Query: 189 THKKALENGNEIVKEYDHLKDIYQEVERTKDGGLVREIIPSISSAEYFKLYNKL 242 + AL+ G ++ ++ + Y V+ T D PS + Y+K YNKL Sbjct: 344 ANIYALKKGLSHIELANYYSENYDTVKITLD----ENKTPSQNVQSYYKKYNKL 393
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.1 bits (88), Expect = 5e-04 Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 3/155 (1%) Query: 313 IETTNETLNAFNVL---DSQAIDLNAISNSVGLNPTQESKITDNSVELNNAQEQTAQEQT 369 +E N+T++ N+ + QA + SN+ + E+ + + + +T E + Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 370 TQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENAPTTIKQETPITPAIPLNPKI 429 QE T E+ Q+ T +E + ++ + +TQ N ET T Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 430 DFKPSEEVLIKGAKTRYKANIKAIELLKELQAKQE 464 + E+ ++ KT+ + + K+ Q++ Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETV 1139 Score = 32.7 bits (74), Expect = 0.023 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 8/80 (10%) Query: 345 TQESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQD 404 TQ +++ + E Q +E T E +E+ + +T + Q + T+Q Sbjct: 1080 TQTNEVAQSGSETKETQTTETKETATVE--------KEEKAKVETEKTQEVPKVTSQVSP 1131 Query: 405 TQENAPTTIKQETPITPAIP 424 QE + T Q P P Sbjct: 1132 KQEQSETVQPQAEPARENDP 1151
>PF05272#Virulence-associated E family protein Length = 892 Score = 27.0 bits (59), Expect = 0.035 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 8/76 (10%) Query: 12 IKELENSIEITKKNIAKYTRLVEQKPSY-PRLEYLQALKWD-----HKTLIDDLAKMSKD 65 ++ + E + + + + P ++++A +WD K L+ L K Sbjct: 505 VETTYGTGEASAQTTEQAINVAADMNRVHPFRDWVKAQQWDEVPRLEKWLVHVLGKT--P 562 Query: 66 RNYKPAFNPKSKEVLK 81 +YKP + V K Sbjct: 563 DDYKPRRLRYLQLVGK 578
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 42.7 bits (100), Expect = 5e-06 Identities = 49/192 (25%), Positives = 71/192 (36%), Gaps = 25/192 (13%) Query: 152 NIAQTKAANDPMYANTPFSNGSDSSFYDNNPNSPSNNAINGKDGANGSNGYGANGNDGVN 211 N AQ + PF+ G ++ N N+ ++ I A+ + G Sbjct: 368 NSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTNAAHLHIGKG 427 Query: 212 GISGSNGANGSHSNNNAIGSGIDTDGVLGVDGVNGSSSSSGGSVGGYENNFT-NHGSTNN 270 GI+ SN A+G + I DG L V+ G + +G S NF G+ Sbjct: 428 GINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSS-----ANFEFKAGTDTK 482 Query: 271 NTGGYDNFNNGSSSGGSL----------------GNGGLFPIPFGNGDTNNSNNSTNTTS 314 N G FNN S G + GNGG + F +G TN N + T+ Sbjct: 483 N--GTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDF-SGVTNKVNINKLITA 539 Query: 315 PTNGSSSNNATN 326 TN + N N Sbjct: 540 STNVAVKNFNIN 551
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.3 bits (65), Expect = 0.011 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 9/63 (14%) Query: 50 YNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKP 109 ++R ++P E F P+ + + N+ A+EK D ++++ L+ E FEK P Sbjct: 293 HSRSGEQPKGFTESFKAPE---------LGVGNLGASEKSDVFLVVSTLLHCIEGFEKNP 343 Query: 110 ELK 112 E+K Sbjct: 344 EIK 346
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 145 bits (367), Expect = 6e-45 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 KMDNKTVAGDVSTKAVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAIESGTIIASIYFDF 80 + DN ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGESKPKCVQ-----KTR----ECYRENRRVDVKL 177 + KG+ D I GES P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 32.8 bits (74), Expect = 0.002 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 12/139 (8%) Query: 32 KEAEKILLDLNKKDEQAID--LNLEDLPSEKKNE-KIEKVTEKQGDF---LEPKEEPKEE 85 +EA K++ D +++ + LN ++ KN ++V + Q D L +E ++E Sbjct: 568 QEANKLIKDFLSSNKELVGKTLNFNKAVADAKNTGNYDEVKKAQKDLEKSLRKREHLEKE 627 Query: 86 PEESLEDIFSSLNDFQEKTDKNAQKDE-----QKNEQEEQRRLREQQRLKQ-NQENQEML 139 E+ LE + N + K N+QKDE K + R + Q LK +E + L Sbjct: 628 VEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKL 687 Query: 140 KGLQQNLNQFTQKLESVKN 158 + + +NL F + + KN Sbjct: 688 ENVNKNLKDFDKSFDEFKN 706
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 31.1 bits (70), Expect = 0.005 Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 72 EPEVQILKGLKPDFIVVVAYGKILPKEVLTIAP 104 EP +++L +KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.7 bits (74), Expect = 0.006 Identities = 21/170 (12%), Positives = 52/170 (30%), Gaps = 7/170 (4%) Query: 315 KKMKEDYTNKTDEALERLDEIIKTEQNNSQTKLDTENLKRIIETLRSKIKANQQKMIDKS 374 K+ E ++ E+ + + + N ++A + + + Sbjct: 98 KEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARK 157 Query: 375 KEMSRNFKLDSNKNEIDAIKDLIKKANEQITNHNETIKDIEKQKKSCKEQTWKFLINEFK 434 ++ + + N + D+ K +A + + + + I + Sbjct: 158 ADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLE 217 Query: 435 SDIQEYNKKYCGLEKGINNLEKEISENQEKVK-------KLENEIKELEK 477 ++ + LEK + + + K+K LE ELEK Sbjct: 218 AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 267 Score = 30.8 bits (69), Expect = 0.020 Identities = 41/345 (11%), Positives = 111/345 (32%), Gaps = 22/345 (6%) Query: 133 ENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNLYKKNEEEFKEILEGFKRKEKFKGKIL 192 + +K++ A + K + K L N+E +E+ ++ K + Sbjct: 50 DTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLS 109 Query: 193 KEFENDKHNQSEIVGLEKLKEKIEIVFSKNQTELALLECDLTDFDSIENHSIWEQKIVGS 252 ++ + ++ LEK E + + ++ LE + + E+ + G+ Sbjct: 110 EKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAA--LAARKADLEKALEGA 167 Query: 253 GDVAIANLIKTLSNEDWVAQGREYVKDNSICPFCQKETITEEFKKQLESYFDTSYQESTD 312 + + A+ K + E A + + + Sbjct: 168 MNFSTADSAKIKTLEAEKAALEARQAELEK--ALEGAMNFSTADSAKIKTLEAEKAALAA 225 Query: 313 TIKKMKEDYTNKTDEALERLDEIIKTEQNNSQTKLDTENLKRIIETLRSKIKANQQKMID 372 +++ + + +I E + + L++ +E + A+ K+ Sbjct: 226 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 285 Query: 373 KSKEMSRNFKLDSNKNEIDAIKDLIKKANEQITNHNETIKDIEKQKKSCKEQTWKFLINE 432 E A++ Q + + +Q + + Sbjct: 286 LEAE-------------KAALEAEKADLEHQSQ-----VLNANRQSLRRDLDASREAKKQ 327 Query: 433 FKSDIQEYNKKYCGLEKGINNLEKEISENQEKVKKLENEIKELEK 477 +++ Q+ ++ E +L +++ ++E K+LE E ++LE+ Sbjct: 328 LEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEE 372
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.3 bits (102), Expect = 1e-06 Identities = 23/170 (13%), Positives = 60/170 (35%), Gaps = 18/170 (10%) Query: 51 RAQYQSYFKNLEQKEEALKERAKEQQAQFDEAVKQASALALQDERAKIIEEARKNAFLEQ 110 + Q+ ++ QKE L ++ E+ + + ++ R + + Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 111 QKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLELEREK 170 LE K ++ EL ++++E+++ E A+ + + + E Sbjct: 252 HAVLEQENKYVEAV----NELRVYKSQLEQIESEILSAKEEYQLVTQ-------LFKNEI 300 Query: 171 IEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAI 220 ++K + +L + + +A +S +VQ+L + Sbjct: 301 LDK--LRQTTDNIGLLTLELAKNEERQQASVIRAPVS-----VKVQQLKV 343
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 640 bits (1653), Expect = 0.0 Identities = 177/671 (26%), Positives = 305/671 (45%), Gaps = 66/671 (9%) Query: 9 RIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAAT 68 +I NIG+ AH+DAGKTT +E +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGV 128 + W++ ++N+IDTPGH+DF EV RS+ VLDGA+ + + GVQ Q+ ++ K G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRIVFVNKMDRIGANFYNVENQIKQRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVWNN 188 P I F+NK+D+ G + V IK++L A V Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVI--------------------------- 154 Query: 189 ETMGAKYDVEEIPSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELDIEEIKKGIKTG 248 K VE P+ + + + + V E ++ L+EKY+ G+ L+ E+++ Sbjct: 155 -----KQKVELYPNMCVTNFTESEQ--WDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 207 Query: 249 CLNMSFVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGE 308 N S P+ GS+ N G+ L++ + + + T E Sbjct: 208 FHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH-------------------RGQSE 248 Query: 309 FAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKE 368 G FKI +L ++R+Y G L V S K+K ++ + + + I + Sbjct: 249 LCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGELCKIDK 307 Query: 369 VYAGEICAFVG----LKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQEKMG 424 Y+GEI L L GDT + ER+E P P++ VEP +E + Sbjct: 308 AYSGEIVILQNEFLKLNSVL-GDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLL 362 Query: 425 VALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRE 484 AL ++++ DP R T + ++ +G++ +E+ L+ ++ VE EI +P V + E Sbjct: 363 DALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME 422 Query: 485 TIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKG 544 R E+ + + + + + P GSG ++ + +S G + + + AV +G Sbjct: 423 --RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 480 Query: 545 IQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPM 604 I+ + G L G+ V D K+ G Y+ S+ F++ + ++ + A LLEP Sbjct: 481 IRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPY 539 Query: 605 MKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQG 664 + ++ P+EY+ D + I + I++ +P + Y +DL T G Sbjct: 540 LSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNG 599 Query: 665 RGTYSMEFDHY 675 R E Y Sbjct: 600 RSVCLTELKGY 610
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.5 bits (89), Expect = 2e-05 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 3/97 (3%) Query: 38 KKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQE 97 + D AP+ P + +E + E + + E+N T +E K Sbjct: 1019 RVDEAPVPPPAPATPSETTETV---AENSKQESKTVEKNEQDATETTAQNREVAKEAKSN 1075 Query: 98 IKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQ 134 +K + + E K+ ETK+ E + K Sbjct: 1076 VKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Score = 34.7 bits (79), Expect = 3e-04 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 4/125 (3%) Query: 49 EKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIKQEIKQEIKQ 108 + +ET QN + +EA + A Q TQ E K+ E +E K Sbjct: 1057 DATETTAQNREVA--KEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE--KEEKA 1112 Query: 109 EIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGKKPLEYKVAVSGVNV 168 +++ E QE+ + T Q K+ + + + PT + + A + Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 169 RAFPS 173 + S Sbjct: 1173 KETSS 1177
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 49.2 bits (117), Expect = 3e-10 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%) Query: 1 MTSALLGLQIVLAVLIVVVVLLQ--KSSSIGLGAYSGSNDSLFGAKGPASFMAKLTMFLG 58 M ALL + +++A+ +V +++LQ K + +G +G++ +LFG+ G +FM ++T L Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 59 LLFVINTIALGYFYNKEYGKSVLD 82 LF I ++ LG N + Sbjct: 61 TLFFIISLVLGNI-NSNKTNKGSE 83
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.1 bits (72), Expect = 0.010 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 7/64 (10%) Query: 447 SKQSIVDEAALKALEEERKKALEQAEQGCSIGENKEEAVASKENKEENKTEAAAPKENQT 506 +K+ IVD K LEE+ KKALE+ + E KE+A ++++K E + E A Sbjct: 128 TKKLIVDAPDPKELEEQ-KKALEKEK------EAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 507 ENKT 510 EN T Sbjct: 181 ENLT 184
>PF07132#Harpin protein (HrpN) Length = 356 Score = 30.4 bits (68), Expect = 0.001 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 41 FWGGAVGGAIGGGVGGAMGGAVGGPAGGWAGRLVGGSVGREFGREIG 87 F G +GG +GGG+GG +G ++GG GG G +GG +G G +G Sbjct: 60 FMGSMMGGGLGGGLGG-LGSSLGGLGGGLLGGGLGGGLGSSLGSGLG 105 Score = 26.6 bits (58), Expect = 0.025 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 39 GRFWGGAVGGAIGGGVGGAMGGAVGGPAGGWAGRLVGGSVGREFGREIGD 88 G GG +GG +GG G ++GG GG GG G +G S+G G +G Sbjct: 62 GSMMGGGLGGGLGGL-GSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGG 110
>BACINVASINC#Salmonella/Shigella invasin protein C signature. Length = 409 Score = 31.8 bits (71), Expect = 0.004 Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 13/133 (9%) Query: 219 AFLSAVKVMSKQLGVFGERPIANTEYSGDYAQRDDAKDLSAKIESMNL-SARCFNCLDKI 277 A ++ + QLG+ G A EY G +R K +AKI+ + S N L+ Sbjct: 173 ALSGSISQSALQLGITGVG--AKLEYKGLQNERGALKHNAAKIDKLTTESHSIKNVLNGQ 230 Query: 278 GIKYVGELVLMSEEELKGVK---------NMGKKSYDEIAEKLNDLGY-PVGTELSPEQR 327 +G + S + L K N + LG ++SPE + Sbjct: 231 NSVKLGAEGVDSLKSLNMKKTGTDATKNLNDATLKSNAGTSATESLGIKNSNKQISPEHQ 290 Query: 328 ESLKKRLEKLEDK 340 L KRLE +E Sbjct: 291 AILSKRLESVESD 303
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 386 bits (993), Expect = e-134 Identities = 159/426 (37%), Positives = 248/426 (58%), Gaps = 13/426 (3%) Query: 2 NKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKAFFDSNSNNA--LGLFNMFSGNAVS 59 + K+L TL + +YRV +IPIPGVD ++ S N GL NMFSG A+ Sbjct: 11 TPDLRKKLLFTLAIIVVYRVGTHIPIPGVDYKNVQQCVREASGNQGLFGLVNMFSGGALL 70 Query: 60 RLSIISLGIMPYITSSIIMELLSATFPNLAKMKKERD-GMQKYMQIVRYLTILITLIQAV 118 +++I +LGIMPYIT+SII++LL+ P L +KKE G K Q RYLT+ + ++Q Sbjct: 71 QITIFALGIMPYITASIILQLLTVVIPRLEALKKEGQAGTAKITQYTRYLTVALAILQGT 130 Query: 119 SVSVGLRSI----SGGANGAIMIDMQVFM-IVSAFSMLTGTMLLMWIGEQITQRGVGNGI 173 + RS G I+ D +F I M GT ++MW+GE IT RG+GNG+ Sbjct: 131 GLVATARSAPLFGRCSVGGQIVPDQSIFTTITMVICMTAGTCVVMWLGELITDRGIGNGM 190 Query: 174 SLIIFAGIVSGIPSAISGTFNLVNTGVINILMLIGIVLIVLATIFAIIYVELAERRIPIS 233 S+++F I + PSA+ + ++ + L + +++VE A+RRIP+ Sbjct: 191 SILMFISIAATFPSALWAIKKQGTLA-GGWIEFGTVIAVGLIMVALVVFVEQAQRRIPVQ 249 Query: 234 YARKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAIA--D 291 YA++++ + YIP+K+N +GVIP IFAS+LL P+ + Q A N ++ + Sbjct: 250 YAKRMIGRRSYGGTSTYIPLKVNQAGVIPVIFASSLLYIPALVAQFAGGNSGWKSWVEQN 309 Query: 292 FLSPQGYAYNILMFLLIIFFAYFYSSIVFNSKDIADNLRRNGGYIPGLRPGEGTSSFLNA 351 Y + FLLI+FFA+FY +I FN +++ADN+++ GG+IPG+R G T+ +L+ Sbjct: 310 LTKGDHPIYIVTYFLLIVFFAFFYVAISFNPEEVADNMKKYGGFIPGIRAGRPTAEYLSY 369 Query: 352 VASKLTLWGSLYLALISTVPWILVKAMGVP--FYFGGTAVLIVVQVAIDTMKKIEAQIYM 409 V +++T GSLYL LI+ VP + + G F FGGT++LI+V V ++T+K+IE+Q+ Sbjct: 370 VLNRITWPGSLYLGLIALVPTMALVGFGASQNFPFGGTSILIIVGVGLETVKQIESQLQQ 429 Query: 410 SKYKTL 415 Y+ Sbjct: 430 RNYEGF 435
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 27.8 bits (62), Expect = 0.028 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Query: 22 DRFKNALFTKEPGGTR-------MGESLRRIALNENISELARAFL 59 DR++ L PG R M +LR++ ++ +S ++ L Sbjct: 159 DRWETELNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQL 203
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (569), Expect = 6e-78 Identities = 62/147 (42%), Positives = 93/147 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS+ ERL+ + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLADLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL + A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEI 150 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 133 bits (336), Expect = 1e-40 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ K N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYVQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.1 bits (72), Expect = 0.004 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 200 KEKEEETIIIGDNTNAMKIIKKDIQKGYKALKSSQ--RKWYCLWACSKKSKLSLMPKEIF 257 K +EE+ II D A+ + Q + ALK + R + A K+SK +MP EIF Sbjct: 367 KIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSEIF 420 Query: 258 NDKQFTYFKF 267 +D FTYF F Sbjct: 421 DDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.5 bits (217), Expect = 2e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.6 bits (121), Expect = 2e-09 Identities = 52/346 (15%), Positives = 108/346 (31%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKYAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKNFAMWGDGTARREYLNAKDLARFIA 222 +YG + + P + T + K+ ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIAQ----------MPS-------VMNVGSGVDYSIEEYYEKVAQVLDYKGVFVKD 265 + I P+ V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 SSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>FLAGELLIN#Flagellin signature. Length = 507 Score = 286 bits (732), Expect = 7e-93 Identities = 130/519 (25%), Positives = 221/519 (42%), Gaps = 18/519 (3%) Query: 2 SFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANL 61 + INTN +L + ++ LSS++E+LSSGLRIN A DD++G AIA+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLE 121 QA RNAND I + QT + A++E L ++ +VQA + +++Q +IQ+ LE Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSG 181 E+D ++N T FNG ++LS + Q+GA T+ + +G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVN---- 175 Query: 182 EGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVR 241 + ++ +FK V G + Y + + +G + + V Sbjct: 176 -----GPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN 230 Query: 242 ASYNVMATG----GTPVQSGTVRELTINGVEIGTVNDVHKNDADGRLTNAINSVKDRTGV 297 A+ + T T V + T E + K +G T V Sbjct: 231 AANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGD-TFDYKGVTFTIDT 289 Query: 298 EASLDIQGRINLHSIDGRAISVHAASASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARD 357 + D G+++ +I+G +++ A + S D + Sbjct: 290 KTGNDGNGKVST-TINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 358 IIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAG 417 S ++ +G ++ TVN + + AG + + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 418 --VTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRD 475 + K + DSA +++D +RS +G++Q + I N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 476 VDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 D+A E +N SK IL Q+G+ +AQAN V QNVL LL+ Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 30.2 bits (68), Expect = 0.033 Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 26/88 (29%) Query: 192 TLDALFEPHLEAQLISYKGNKLK-----AQELIDEKKAQ--------------------- 225 TLD P Q K NKLK A E + + + + Sbjct: 372 TLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIE 431 Query: 226 EIKNELEKESYIISSIIKKSKKSPTPPP 253 EIK EL + YI I KSKKS T P Sbjct: 432 EIKKELIETGYIKFKKIYKSKKSKTSKP 459
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.008 Identities = 33/256 (12%), Positives = 75/256 (29%), Gaps = 15/256 (5%) Query: 135 EANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQERQKTEQ 194 E K ++ T Q S +E + +++ + +E E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 195 EKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQLFIKKARIKTGIT 254 KQ++ E + + T + + + + T+ N + G + +T T Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 255 TGIAIEIEAECKTPKPAK-----TNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELE 309 + E +A+ +T K + + +P Q + Q R + I Q Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ-SQT 1162 Query: 310 SLPYSQKAIAKQVDFYKPSSIAY---------LELDPRDFKVTEEWQKENLKIRSKAQAK 360 + + AK+ + + +P + N + +K + + Sbjct: 1163 NTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNR 1222 Query: 361 MLEMRNPQAHLPTSQS 376 H + Sbjct: 1223 HRRSVRSVPHNVEPAT 1238 Score = 29.6 bits (66), Expect = 0.026 Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 13/137 (9%) Query: 110 AASLLLAACSTGDIDKQIELEQEK--KEANKSGIKLEQERQKTEQERQK---TNKSEIEL 164 A S + A T ++ + +E E ++ ++E+ K E E+ + S++ Sbjct: 1072 AKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSP 1131 Query: 165 EQERQKTNKSGIELANSQIKAEQERQKTEQEKQKA--------NKSEIELEQQKQKTINT 216 +QE+ +T + E A ++ Q A S +E + T+NT Sbjct: 1132 KQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNT 1191 Query: 217 QRDLIKEQKDFIKETEQ 233 +++ ++ T Q Sbjct: 1192 GNSVVENPENTTPATTQ 1208
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 293 bits (752), Expect = 9e-92 Identities = 104/454 (22%), Positives = 184/454 (40%), Gaps = 71/454 (15%) Query: 388 DLEHMNSFKEGEILVTDN-TDPDWEPCMKK-ASAVITNRGGRTCHAAIVAREIGVPAIVG 445 + + + E +++ ++ T D K+ T+ GGRT H+AI++R + +PA+VG Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 446 VSGATDSLYTGMEITVSCAEGE---------EGYVYAGIYEHEIERVELSNMQETQT--- 493 T+ + G + V EG E ++ E + + + Sbjct: 206 TKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTK 265 Query: 494 -----KIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEK 548 ++ NIG P+ G+GL R E + +++ + P Sbjct: 266 DGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQ-LPTE------------- 311 Query: 549 NEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEP 608 E Y K++ + KPV++RT D ++ + L P Sbjct: 312 ---EEQFEAY--------KEVVQ-------RMDGKPVVIRTLDIGGDKELSYL----QLP 349 Query: 609 NEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVL 668 E NP LG+R + F + AL N+KVM P + T+EE ++ Sbjct: 350 KELNPFLGFRAIRLCLE--KQDIFRTQLRALL---RASTYGNLKVMFPMIATLEELRQAK 404 Query: 669 EILRKNNLESGKNG------LEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGV 722 I+++ + G +E+ IM E+P + A+ F D FSIG+NDL Q T+ Sbjct: 405 AIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAA 464 Query: 723 DRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITS 782 DR +E VS+++ + A+L++ I+A K+ G+CG+ D L+ G+ Sbjct: 465 DRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLGLGLDE 523 Query: 783 ISLNPDSVIPTWNAVAKLE----KELKDHGLTAR 812 S++ S++P + + KL K L Sbjct: 524 FSMSATSILPARSQLLKLSKEELKPFAQKALMLD 557
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 149 bits (377), Expect = 4e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEGFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLEAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.015 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 359 bits (923), Expect = e-126 Identities = 118/345 (34%), Positives = 193/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGNK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTG+ S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AIISGNSS-----------NLLSANIINGATIEREVSYDLFHKNAMTLSLKNPNFKNAIQ 186 A+I S SA + NGA IERE+ + L L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERLSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPIVVTSQDITLKITKEP--------LNDSKNMQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P +Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.1 bits (65), Expect = 0.050 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + ++I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.8 bits (67), Expect = 0.025 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANLVMRLNPR----FKPHNGEILFETTNLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 114 bits (286), Expect = 1e-28 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 11 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMKSQVMDTMDIEKERGITIKAQSV 67 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 68 RLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 127 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 128 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDWFNANEVS 169 + + INKID ++ V QDI++ + + +V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 159 Score = 82.6 bits (204), Expect = 1e-18 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 17/215 (7%) Query: 169 SAKAKLGIKDLLEKIITTIPAPSGDPNNPLKALIYDSWFDNYLGALALVRIMDGSINTEQ 228 SAK +GI +L+E I + + + L ++ + LA +R+ G ++ Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 229 EILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDA 285 + + K + +Y + GEI I+ L L SV +GDT Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL- 333 Query: 286 ENPTSKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFG 345 P + IE P + + P + + E L +ALL++ +D L + +S+ Sbjct: 334 --PQRERIEN---PLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---E 385 Query: 346 FRVGFLGLLHMEVIKERLEREFSLNLIATAPTVVY 380 + FLG + MEV L+ ++ + + PTV+Y Sbjct: 386 IILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 31.4 bits (71), Expect = 0.011 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 2/82 (2%) Query: 407 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 466 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 467 LKSCTKGYASFDYEPIENREAN 488 L T G + E Sbjct: 593 LTFFTNGRSVCLTELKGYHVTT 614
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.9 bits (67), Expect = 0.010 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.2 bits (94), Expect = 1e-05 Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 43/187 (22%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVT-----LVGGQLLAIFSLFIVENVYTHEQISAFAWRYLFALEGILALLSLF 205 G GS + +GG + W YL + I + F Sbjct: 142 GLIGSIVAMGEGVGPAIGGMIA-----------------HYIHWSYLLLIPMITIITVPF 184 Query: 206 LRNIMEE 212 L ++++ Sbjct: 185 LMKLLKK 191
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.3 bits (78), Expect = 0.002 Identities = 46/220 (20%), Positives = 79/220 (35%), Gaps = 21/220 (9%) Query: 178 NTPSDSQKKETNNDKEKENLKENPI-DENHNTPNEESFLAIPTPYNTTLNNSEPQEGLVQ 236 N +N++E + E P+ TP+E + T NS+ + V+ Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT--------ETVAENSKQESKTVE 1052 Query: 237 ISPHPPTHYTIY-------PKRNRFDDLTNPTLKEPKQETKEREPTLKKETPTTLKPIMP 289 + T T K N + + + ETKE + T KET T K Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE--E 1110 Query: 290 ISASNTENHDKTENHKTPNHPIKEDDLQESPQENPQKENIE-ENIEEKETQNAPSFSPLT 348 + TE + + P +E PQ P +EN NI+E ++Q + Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170 Query: 349 LTSAKKPVMVKELSENKEILDGLDYGEVQKPKDYELPTTQ 388 + + ++E+ + G V+ P++ TTQ Sbjct: 1171 PAKETSSNVEQPVTESTTVNTGNSV--VENPENTTPATTQ 1208
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.015 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 143 NAAKNGEEHSNEGLITVNKTGQDIESLYEKMQNATSLADSLNQRS--NEITQVISLIDDI 200 N + ++ N+ L T+NK +D+ S E ++ ++ N + +SL+ D+ Sbjct: 47 NKKLDQKDQVNQALDTINKVTEDVSSKLEGVRESSLELVESNDAGVVKKFVGSMSLMSDV 106 Query: 201 AEQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEKTQKA 242 A+ T + + A I A +G G V + +K ++TQKA Sbjct: 107 AKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKA 148
>FLAGELLIN#Flagellin signature. Length = 507 Score = 244 bits (624), Expect = 6e-77 Identities = 126/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SIDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.006 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSKNILKDFQSFENFKQEVT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 KEWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.028 Identities = 15/113 (13%), Positives = 40/113 (35%), Gaps = 16/113 (14%) Query: 203 LARMIALQKKLEQIQTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDMQ 255 LAR+ + ++ + + L K + + ++A L Y + ++ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 256 FALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQD-LVSLREQISALRYQ 307 + + + +T K +D +LR+ D + L +++ + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.0 bits (122), Expect = 1e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLESYEFT 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 31.3 bits (71), Expect = 0.003 Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 21/150 (14%) Query: 70 QAQSDSTEQQLIFAKKQYQRYSKIGGAVDKNTLESYEFTYRRLESDYAYSIAVLNKTILR 129 +++ S +++ + ++ +I + + T T +++ +++R Sbjct: 279 ESEILSAKEEYQLVTQLFKN--EILDKLRQTTDNIGLLTLELAKNE-----ERQQASVIR 331 Query: 130 APFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG-------D 180 AP + + GV L+ +V L + +K I + VG + Sbjct: 332 APVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVE 391 Query: 181 TYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + Y+ G K+ I D+ Sbjct: 392 AFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 895 bits (2315), Expect = 0.0 Identities = 288/1040 (27%), Positives = 518/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGVMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTSYIRTSIEDVKFDLILGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RSGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 ++ TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMSKRKASYEGVKEIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYMWSEPFFKALESRYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKLGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHDEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEHELGQFELMSALKKELKS 631 + + E FT + G QN FV LKP +ER E ++ K EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNG-DENSAEAVIHRAKMELGK 656 Query: 632 MPEAKDLDSINLSEVALIGGGGDSSPFQTFVFSHSQEAVDKSVENLRKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGTAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 273 bits (698), Expect = 5e-76 Identities = 106/397 (26%), Positives = 183/397 (46%), Gaps = 14/397 (3%) Query: 2803 AGNNSIMWLSELFAAKGGNPLFAPYYLQDNPTEHIVTLMKDITSALGMLSNSNLKNNSTD 2862 +G L L + +A + I + T+ L +++ K + Sbjct: 904 SGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQ 962 Query: 2863 VLQLNTYTQQMSRLAKLSNFASFDSTDFSERLSSLKNQRFADAVPNAMDVILKYSQRDKL 2922 L L+ SRL LS + F++RL +LK+QRFA + +A +V+ +++ + + Sbjct: 963 TLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEK 1021 Query: 2923 KNNLWATGVGGVSFVENGTGTLYGVNVGYDRFVRG---VIVGGYAAYGYSGFYER--ITS 2977 N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + + Sbjct: 1022 PTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLN 1081 Query: 2978 SKSDNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDALLSMINQSYKYSTWTTNAK 3037 S ++N + G+Y+R F + E F G++++ ++ ALL +NQSY Y ++ + Sbjct: 1082 SGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATR 1141 Query: 3038 VNYGYDFMFKNKSIILKPQIGLRYYYIGMSGLEGVMNNVLYNQFKANADPSKKSVLTIDF 3097 +YGYDF F +++LKP +G+ Y ++G + + + S + + Sbjct: 1142 ASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNS----NQKVALKNGASSQHLFNASA 1197 Query: 3098 ALENRHYFNTNSYFYAIGGVGRDLLVNSMGDKLVRFIGNNTLSYRKGDLYNTFANITTGG 3157 +E R+Y+ SYFY GV ++ N V + R NT A + GG Sbjct: 1198 NVEARYYYGDTSYFYMNAGVLQEFA-NFGSSNAVSLNTFKVNATRNP--LNTHARVMMGG 1254 Query: 3158 EVRLFKSFYANAGVGARFGLDYKMIDIIGNIGMRLAF 3194 E++L K + N G L + N+GMR +F Sbjct: 1255 ELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 35.8 bits (82), Expect = 0.004 Identities = 78/475 (16%), Positives = 151/475 (31%), Gaps = 101/475 (21%) Query: 83 SVNENNNNKSYYISPLRTWAGGNRSFTQNYNNSQLYIGTKNASATPNHSSVWFGEKGYIG 142 V+ N +Y +S L + GG+ N + L +G N ++ ++ K Sbjct: 133 EVDMQNAVGTYNLSGLINFTGGD--LDVNMQKATLRLGQFNGNSFTSY-------KDSAD 183 Query: 143 FITGV-FKARDIFITGAVGSGNELKTGGG-----AILVFESSNELTTNGAYFQNNRAGTQ 196 T V F A++I I + N + +G G +L ++S +T+ + Sbjct: 184 RTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRE---NAEISLYD 240 Query: 197 TSWINLISNNSVNLTNTDFGNQTPNGGF-----------NVMGRKITYNGGSVNGGNFGF 245 + +NL SN+ + N G G + V G ++ +N +V N Sbjct: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTG-EVNFNHLTVGDHNAAQ 299 Query: 246 DNVDSNGATTISGVTFNNNGALTY----KGGNGIGGSITFTNSNINHYKLNLNANSVTFN 301 + ++ T I + + L +GG + +N+ N+ K + +S + Sbjct: 300 AGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNS 359 Query: 302 NSTLGSMPN------------------GNANTIGNAYILNAN------NITFNNLTFNGG 337 N+ + + PN G NT+ N +N N F Sbjct: 360 NTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTNA 419 Query: 338 WFVFNRSDAHVNFQGTTTINNPTSPFVNMTGKVTINPNAIFNIQNYTPTIGNAYTLFSMK 397 + +N + + N+TG +T++ N Q + + F K Sbjct: 420 AHLHIGKGG-INLSNQAS--GRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFK 476 Query: 398 ------------NGNIAY------------------DDVNNLWNIIRL----------KN 417 N +I+ D N +N + K Sbjct: 477 AGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINKL 536 Query: 418 TQATKDNSKNATSNNNTHTYYVTYNLGGTLYHFRQIFSPDSIVLQSVYYGANNLY 472 A+ + + + N ++G + I S I + G ++Y Sbjct: 537 ITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIY 591 Score = 33.5 bits (76), Expect = 0.021 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 3/90 (3%) Query: 701 SYAFDGVNNAFNEDKFNGGSFNFNHAEQTNAFNNNSFSGGSFSFNAKQVDFNGNSFNGGV 760 SY+ + E FN + ++A Q +N G+ + N + G Sbjct: 272 SYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGG 330 Query: 761 FNFNNTPKASFTNDTFNVNNQFKINGAQTD 790 + P +N T N K +Q + Sbjct: 331 YKDK--PNDKPSNTTQNNAKNDKQESSQNN 358
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.8 bits (69), Expect = 8e-04 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 16 KRKRLLTELAELEAEIKVSSERRSSFNVSLSPS 48 R +L ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.5 bits (131), Expect = 2e-10 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK LPV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 25.2 bits (55), Expect = 0.042 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 12/69 (17%) Query: 12 LKDALIDYLFEKGFDDFFYV--ECYKYAASSLLLSQKEQVSGRKDYAKFKLFLSEEVALP 69 L+ A + + F Y + +SSL+ K+ A+F + V Sbjct: 98 LQMANTNKTLASDLETVFLTTSTEYSFLSSSLV----------KEVARFGGNVEHFVPSH 147 Query: 70 LAQALKNQF 78 +A AL +QF Sbjct: 148 VAAALYDQF 156
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 760 bits (1963), Expect = 0.0 Identities = 228/1045 (21%), Positives = 467/1045 (44%), Gaps = 44/1045 (4%) Query: 5 IIEFSLRQRIIVIVGAILVLFFGTYSFINTPVDAFPDISPTQVKIILKLPGSSPEEMENN 64 + F +R+ I V AI+++ G + + PV +P I+P V + PG+ + +++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 IVRPLELELLGLKGQKSLRSISKYSIS-DITIDFDDSVDIYLARNIVNERLSSVMKDLPV 123 + + +E + G+ + S S + S IT+ F D +A+ V +L LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GVEGGMAPIVTPLSDIFMF----TIDGNITEIEKRQLLDFVIRPQLRMISGVADVNSIGG 179 V+ + S M + + T+ + + ++ L ++GV DV G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 FSRAFVIVPDFNDMARLGVSISDLEAAVRVNLRNSGAGRVDR----DGETFLVKI--QTA 233 A I D + + + ++ D+ ++V AG++ G+ I QT Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 SLSLEDIGKITI--STNLGHLHIKDFAKVISQSRTRLGFVTKDGVGETTEGLVLSLKDAN 291 + E+ GK+T+ +++ + +KD A+V +G + AN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGAN 298 Query: 292 TKEIITQVYQKLEELKPFLPSGVSINVFYDRSEFTQKAIATVSKTLIEAVVLIIITLFLF 351 + + KL EL+PF P G+ + YD + F Q +I V KTL EA++L+ + ++LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 352 LGNLRASVAVGVILPLSLSVAFIFIKISDLTLNLMSLGGLVIAIGMLIDSSVVVVENAFE 411 L N+RA++ + +P+ L F + ++N +++ G+V+AIG+L+D ++VVVEN E Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV-E 417 Query: 412 KLSANTKTTKLHAIYRSCKEIAVSVVSGVVIIIVFFVPILTLQGLEGKMFRPLAQSIVYA 471 ++ K A +S +I ++V +++ F+P+ G G ++R + +IV A Sbjct: 418 RVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSA 477 Query: 472 LLGTLVLSITIIPVVSSLVLK--ATPHSET---FLTRFLNRIYAPLLEFFVHNPKKVI-- 524 + ++++++ + P + + +LK + H E F F N + + + ++ K++ Sbjct: 478 MALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWF-NTTFDHSVNHYTNSVGKILGS 536 Query: 525 ----LGAFVFLIA-SLSLFPFVGKNFMPALDEGDVVLSVETTPSISLDQSKDLMLNIESA 579 L + ++A + LF + +F+P D+G + ++ + ++++ ++ + Sbjct: 537 TGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY 596 Query: 580 IKKHV-KEVKSIVARTGSDELGLDLGGLNQTDTFISFIPKKEWSVKTKDELL-EKIMDSL 637 K+ V+S+ G G + ++F+ K W + DE E ++ Sbjct: 597 YLKNEKANVESVFTVNGFSFSG------QAQNAGMAFVSLKPWEERNGDENSAEAVIHRA 650 Query: 638 K-DFKGINFSFTQPIEM-RISEMLTGVRGDLA-VKIFGDDISELNELSFQIA-QALKGIK 693 K + I F P M I E+ T D + G L + Q+ A + Sbjct: 651 KMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 694 GSSEVLTTLNEGVNYLYVTPNKESMADVGITSNEFSKFLKSALEGLVVDVIPTGISRTPV 753 V E + ++E +G++ ++ ++ + +AL G V+ + Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 754 MIRQESDFASSITKIKSLALTSKYGVLVPITSIAKIEEVDGPVSIVRENSMRMSVVRSNV 813 ++ ++ F + L + S G +VP ++ V G + R N + ++ Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA 830 Query: 814 VGRDLNSFVEEAKKVIAQNIKLPPSYYITYGGQFENQQRANKRLSTVIPLSILAIFFILF 873 + + +A KLP + G ++ + + ++ +S + +F L Sbjct: 831 APGTSSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 874 FTFKSIPLALLILLNIPFAVTGGLIALFAVGEYISVPASVGFIALFGIAVLNGVVMIGYF 933 ++S + + ++L +P + G L+A + V VG + G++ N ++++ + Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 934 KELLL-QGKSVEECVLLGAKRRLRPVLMTACIAGLGLLPLLFSHSVGSEVQKPLAIVVLG 992 K+L+ +GK V E L+ + RLRP+LMT+ LG+LPL S+ GS Q + I V+G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 993 GLVTSSALTLLLLPPMFMLIAKKIK 1017 G+V+++ L + +P F++I + K Sbjct: 1009 GMVSATLLAIFFVPVFFVVIRRCFK 1033
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.9 bits (64), Expect = 0.043 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 6/100 (6%) Query: 239 AMPQTLAQTETQKSQIEKSQIEEAQTQKSQEMKEAASEQAIKKPLEKEKDKPMYLAQINS 298 A A T+T + S+ +E QT +++E E+ K EK ++ P +Q Sbjct: 1072 AKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ--- 1128 Query: 299 ADFAPAKKSPKKPAKASPKRSSKNNISVKSNTKTASKNKE 338 K+ + + + + +N+ +V + N Sbjct: 1129 ---VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTT 1165
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 25.9 bits (57), Expect = 0.029 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 10/36 (27%) Query: 5 DALLQR---LEKLSM--LEIKDEHKES-----VKGH 30 D + +++L M EIK E+KE +K Sbjct: 202 DYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSK 237
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 100 bits (250), Expect = 3e-25 Identities = 77/384 (20%), Positives = 143/384 (37%), Gaps = 26/384 (6%) Query: 3 KEMFPLALVSSLRFLGLFIVLPVISWYADSFHSSSPLL--VGLAVGGAYLTQIIFQTPMG 60 + + + +L +G+ +++PV+ S+ + G+ + L Q +G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 61 ILSDKIGRKVVVMVCLLLFLIGSLVCFVANDIITLVIGRFIQGM-GALGGVVSAMVADEV 119 LSD+ GR+ V++V L + + A + L IGR + G+ GA G V A +AD Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 120 KEEERTKAMAIMGAFIFISFTISMAIGPGVVAFLGG--AKWLFLLTAILTLLSLLM-LLK 176 +ER + M A F M GP + +GG F A L L+ L Sbjct: 125 DGDERARHFGFMSA----CFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL 180 Query: 177 VKDAPKISYQIKNIKAYQPNSKALYLLYLSSFFEKMFMTLIFVLI---PLAL-----VNE 228 + ++ K + +A P + + ++ M + I L+ P AL + Sbjct: 181 LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR 240 Query: 229 FHKDESFLILVYVPGALLGVLSMGIASVMAEKYNKPKGVMLSGVLLFIVSYLCLFLADSS 288 FH D + + + +L L+ + + + ++ G++ Y+ L A Sbjct: 241 FHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRG 300 Query: 289 FLGKYLWLFIVGVAFFFIGFATLEPIMQSLASKFAKVHEKGKVLGQFTTFGYLGSFVGGV 348 W+ + P +Q++ S+ +G++ G L S VG + Sbjct: 301 ------WMAFPIM-VLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL 353 Query: 349 SGGLSY-HHLGVSNTSLIIVALGL 371 Y + N I L Sbjct: 354 LFTAIYAASITTWNGWAWIAGAAL 377
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 50.6 bits (121), Expect = 5e-09 Identities = 43/193 (22%), Positives = 87/193 (45%), Gaps = 6/193 (3%) Query: 37 LSDIAKSFEMESATVGLMITAYAWVVSLGSLPLMLLSAKIERKRLLLFLFALFIFSHILS 96 L DIA F A+ + TA+ S+G+ LS ++ KRLLLF + F ++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 97 ALAWNFW-VLLLSRMGIAFAHSIFWSITASLVIRVAPRNKKQQALGLLALGSSLAMILGL 155 + +F+ +L+++R + F ++ +V R P+ + +A GL+ ++ +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 156 PLGRIIGQILDWRSTFGVIGGVATLIMLLMWKLLPHLPSRNAGTLASVPILMKRPLLVGI 215 +G +I + W ++ ++ + T+I + L R G I++ + VGI Sbjct: 157 AIGGMIAHYIHW--SYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIIL---MSVGI 211 Query: 216 YLLVIMVISGHFT 228 ++ S + Sbjct: 212 VFFMLFTTSYSIS 224
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.5 bits (102), Expect = 1e-06 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 16/156 (10%) Query: 96 DDQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQE 155 + EVAQ+ E + + K + ++EK K E EK + + Sbjct: 1078 ANTQTNEVAQSGSETKETQTTETK------ETATVEKEEKAKVETEKTQEVPKVTSQVSP 1131 Query: 156 KQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFFI 215 KQ+ + Q + E + +E Q NT D A++ N Q Sbjct: 1132 KQEQSETVQPQAEPAR------ENDPTVNIKEPQSQTNTTADTEQPAKET-SSNVEQPVT 1184 Query: 216 KKLGIKAGIAIEIEAECKTP---KPTKTNQTPIQPK 248 + + G ++ E TP +PT +++ +PK Sbjct: 1185 ESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Score = 42.0 bits (98), Expect = 4e-06 Identities = 36/222 (16%), Positives = 87/222 (39%), Gaps = 13/222 (5%) Query: 97 DQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEK 156 + SK+E +K ++A + ++ ++ + + Q E + +E ++ +T + K Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 157 QKT---EQEKQKTSNIETN------NQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQ 207 + ++EK K +T +Q+ +QEQ +T Q Q + D ++ Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQ-PQAEPARENDPTVNIKEPQS 1160 Query: 208 ENHNQFFIKKLGIKAGIAIEIEAECKTPKPTKTNQTPIQPKHLPNSKQPHSQRGSKAQEL 267 + + ++ + +E T T + P + QP S + Sbjct: 1161 QTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Query: 268 IAYLQKELESLPYSQKAIAKQVDFYRPSSIAYLELDPRDFNA 309 + ++ + S+P++ + + S++A +L + NA Sbjct: 1221 NRH-RRSVRSVPHNVEPATTSSN--DRSTVALCDLTSTNTNA 1259 Score = 35.8 bits (82), Expect = 3e-04 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 1/149 (0%) Query: 95 ADDQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQ 154 KE A +KE + + + + +QE+ +T Q + + +E T Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 155 EKQKTEQEKQKTSNIETNNQIKVEQEQQKTE-QEKQKTNNTQKDLVNKAEQNCQENHNQF 213 K+ Q + + EQ TE N+ ++ N Q N Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSE 1214 Query: 214 FIKKLGIKAGIAIEIEAECKTPKPTKTNQ 242 K + ++ P T +N Sbjct: 1215 SSNKPKNRHRRSVRSVPHNVEPATTSSND 1243
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 28.5 bits (63), Expect = 0.036 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 15/110 (13%) Query: 45 KIRAFNKDYEILETTH-EVFEKEEIDIAFFSAGGSVSEEFAISASKTALVIDNTSFFRLN 103 K+ A + Y+ + +H + + I + G +S+ A S ID S Sbjct: 131 KVYATYRKYQAIRISHGNISDDGSI---YKLTGIWLSKTSADSLGN----IDQGSLIETG 183 Query: 104 KDVPLVVPEINAQEIFNAPLNIIANPNCSTIQMTQIL--NPLHLHFKIKS 151 + L VP + ++ + +T L NP + +S Sbjct: 184 ERCVLTVPSTDIEKEILDL-----AAATERLNLTDALNSNPAGNLYDWRS 228
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 418 bits (1076), Expect = e-143 Identities = 122/336 (36%), Positives = 205/336 (61%), Gaps = 18/336 (5%) Query: 228 YTFSGVLLENTDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQGFEAL 284 +TF G D+K EK + D + + S +++ + +YF T + G Sbjct: 216 HTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTNNF 274 Query: 285 IDSEIGTKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVIEYGL 333 + +G N + I K++ N ++GP+ + A++P L ++YG Sbjct: 275 YTANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGW 332 Query: 334 ITFFAKGVFVLLDYLYQFVGNWGWAIILLTIIVRIILYPLSYKGMVSMQKLKELAPKMKE 393 + F ++ +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ L PK++ Sbjct: 333 LWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQA 392 Query: 394 LQEKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSEWV 453 ++E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + + Sbjct: 393 MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFA 452 Query: 454 LWIHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFTIFLITFPAG 513 LWIHDLS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT+F + FP+G Sbjct: 453 LWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSG 512 Query: 514 LVLYWTTHNILSVLQQLIINKVLENKKRAHAQNIKE 549 LVLY+ N+++++QQ +I + LE K+ H++ K+ Sbjct: 513 LVLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKK 547
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 36.0 bits (83), Expect = 3e-04 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 25/134 (18%) Query: 227 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 269 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 270 KGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLMDTLN 329 + KV +IDT G + E+ R SL L D + + ++ + L L Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 330 RTKKPCIVVLNKND 343 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 29.3 bits (65), Expect = 0.026 Identities = 13/60 (21%), Positives = 21/60 (35%) Query: 155 SKSMGDLLAKAAPMERILKAYSVPVSSLENYEKIYYQNAFKPKVRIAFDDNSDTEIKNAL 214 + + D L P + +A + E + YQ + FD + IKN L Sbjct: 536 AVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQL 595
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 293 bits (751), Expect = e-105 Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.013 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 36.8 bits (85), Expect = 7e-05 Identities = 28/184 (15%), Positives = 79/184 (42%), Gaps = 12/184 (6%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQATVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIAERLKGVKKKKGVELFHKAN----KISGHQAISSDILEKGGI 218 + A A+ ++ + + R + + + L + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVK-RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 219 DN-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQV 276 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 277 YKLP 280 ++P Sbjct: 267 QRVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.0 bits (75), Expect = 0.001 Identities = 30/183 (16%), Positives = 75/183 (40%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIVEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EVDASKKLAKMQETLDFIKERL-KNVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 217 + A LA+ ++ + +K R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLSPEDVLNNPKFSTIKAIKNKQVY 275 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.031 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGVWGLLILNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217