>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.0 bits (67), Expect = 0.037 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 5/104 (4%) Query: 550 NADKTDKKAQRQQAAALRQQLAPHKREADKLERDLGLVNEKLAKVEEALA----DSTNYE 605 +A + KK + L +Q + L RDL E ++E + E Sbjct: 319 DASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISE 378 Query: 606 AANKDKLRDLLAEQAKLKVRESELEDAWMQALELLESMQAELEA 649 A+ + RDL A + K E LE+A + L LE + ELE Sbjct: 379 ASRQSLRRDLDASREAKKQVEKALEEANSK-LAALEKLNKELEE 421
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 44.3 bits (104), Expect = 5e-07 Identities = 36/245 (14%), Positives = 81/245 (33%), Gaps = 8/245 (3%) Query: 21 SLLEHLEDACSQALADAEKLLAK-LEKQRGKAQEKLHNSRIKLQDAATAGKSKAQAKAKD 79 ++ +A+ K +K +EK A E +R ++A + K+ Q Sbjct: 1027 PPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVA 1086 Query: 80 AVSELEELLDALKDRQTETRTYILHLKRDAQESLKLAQGIGRVKEAVGKILTTR-NAKPA 138 + + ++T T K + +++ ++ + +V + T + A+PA Sbjct: 1087 QSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 139 APKAAAKAGTAATAKAPAKTAVKAAAAKPVAKTAAKPSSVAKPAAKPAATKAPVK---AA 195 ++ + A + + + + + P A Sbjct: 1147 RENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Query: 196 AKPATRAAAAAKPAAAKTAAAKPVTAKPAATRPAAKAAAAKAPVAKTTASSAAKPAAAKT 255 +P + ++ KP K + V + P PA ++ ++ VA +S A Sbjct: 1207 TQPTVNSESSNKP---KNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSD 1263 Query: 256 PVAKP 260 AK Sbjct: 1264 ARAKA 1268 Score = 36.6 bits (84), Expect = 1e-04 Identities = 36/273 (13%), Positives = 82/273 (30%), Gaps = 25/273 (9%) Query: 37 AEKLLAKLEKQRGKAQEKLHNSRIKLQDAATAGKSKAQAKAKDAVSELEELLDALKDRQT 96 + A + +E + A A S+ + + + ++ + T Sbjct: 1000 PNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDAT 1059 Query: 97 ETRTYILHLKRDAQESLKLAQGIGRVKEAVGKILTTRNAKPAAPKAAAKAGTAATAKAPA 156 ET + ++A+ ++K V ++ + T+ + K A AK Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSE---TKETQTTETKETATVEKEEKAKVET 1116 Query: 157 ----KTAVKAAAAKPVAKTAAKPSSVAKPAAKPAATKAPVKAAAK---------PATRAA 203 + + P + + A+PA + T + ++ PA + Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS 1176 Query: 204 AAAKPAAAKTAAAK--------PVTAKPAATRPAAKAAAAKAPVAKTTASSAAKPAAAKT 255 + + ++ P PA T+P + ++ P + S + P + Sbjct: 1177 SNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEP 1236 Query: 256 PVAKPAAKAPVKAPAKAATKAPVKAPVKAAAKP 288 ++ V A + A AK Sbjct: 1237 ATTSSNDRSTV-ALCDLTSTNTNAVLSDARAKA 1268
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 134 bits (339), Expect = 3e-41 Identities = 74/219 (33%), Positives = 112/219 (51%), Gaps = 3/219 (1%) Query: 11 LLLPLAQAAEAPPAAADDGHDLAYSLGASLGERLHQEVPDLDLKALVDGLKQAYQGKPLA 70 L + A AA + D L+YS+GA LG+ + D++ L G++ G L Sbjct: 13 LAMSTAMAATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQDGMSGAQLI 72 Query: 71 LKQERIDQVLREHDAAIAQAETAGTDAPTEAALKAERTFMDSEKAKPGVKVLADGILMTE 130 L +E++ VL + + +A + E F+ + K+KPG+ VL G+ Sbjct: 73 LTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPSGLQYKI 132 Query: 131 LTPGTGPKPDANGRVEVRYVGRLPDGTIFD---QSTQPQWFRLDSVISGWTSALQTMPTG 187 + GTG KP + V V Y G L DGT+FD ++ +P F++ VI GWT ALQ MP G Sbjct: 133 IDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAG 192 Query: 188 AKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIAVSQ 226 + W + +P+D AYG G I P L+F+I LI+V + Sbjct: 193 STWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVKK 231
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 52.4 bits (125), Expect = 3e-10 Identities = 42/242 (17%), Positives = 94/242 (38%), Gaps = 38/242 (15%) Query: 11 VLICGASRGIGLAMCAALLARDDVAQVWAVARQASSSTELEKLAEQYGQRIKRVDCDARD 70 I GA++GIG A+ L ++ A + AV ++ + + + D RD Sbjct: 11 AFITGAAQGIGEAVARTLASQG--AHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 71 EQSLEALVSETLEGCEHLHLVISTLGILHQDGAKAEKGLAQLTLASLQASFATNTFAPIQ 130 +++ + + + ++++ G+L + L+ +A+F+ N+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRP------GLIHSLSDEEWEATFSVNSTGVFN 122 Query: 131 LLKHLLPLLRKQPSTFAALSARVGSIGDNRLG----GWYSYRASKAALNQLLHTASIELK 186 + + + + S + ++G N G +Y +SKAA +EL Sbjct: 123 ASRSVSKYMMDRRS------GSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 187 RLNPASTVLAIHPGTTDTELSQP------------------FQANVPEGQLFEPAFSADR 228 N +++ PG+T+T++ F+ +P +L +P+ AD Sbjct: 177 EYNIRCNIVS--PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADA 234 Query: 229 II 230 ++ Sbjct: 235 VL 236
>PF07132#Harpin protein (HrpN) Length = 356 Score = 31.2 bits (70), Expect = 0.002 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 13/76 (17%) Query: 78 GSAIGAGLGGAAGGAVGADRRNRTEAAIGGGLGAAGGNVVGRSVGGSTGSLIGSAVGGGG 137 GS +G GLGG GG +G LG GG ++G +GG GS +GS +G Sbjct: 62 GSMMGGGLGGGLGG-------------LGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSAL 108 Query: 138 GAALGNYMGNESRSDD 153 G LG +G + + Sbjct: 109 GGGLGGALGAGMNAMN 124 Score = 30.0 bits (67), Expect = 0.004 Identities = 24/48 (50%), Positives = 29/48 (60%) Query: 48 ASAGNLESGAGGALGGVLGSVVGQQLGGSTGSAIGAGLGGAAGGAVGA 95 G L S GG GG+LG +G LG S GS +G+ LGG GGA+GA Sbjct: 71 GGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGLGGALGA 118 Score = 28.9 bits (64), Expect = 0.010 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 2/106 (1%) Query: 39 LSLALISGAASAGNLESGAGGALGGVLGSVVGQQLGGSTGSAIGAGLGGAAGGAVGADRR 98 LS + + + G GG LGG LGS +G GG G +G GLG + G +G+ Sbjct: 51 LSDIMTTMMFMGSMMGGGLGGGLGG-LGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALG 109 Query: 99 NRTEAAIGGGL-GAAGGNVVGRSVGGSTGSLIGSAVGGGGGAALGN 143 A+G G+ ++G + + L+G + G GN Sbjct: 110 GGLGGALGAGMNAMNPSAMMGSLLFSALEDLLGGGMSQQQGGLFGN 155
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.011 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 8/59 (13%) Query: 184 QPKPYPDLSEVQGQTAAKRALVIAAAGAHN--------LLFSGPPGTGKTLLASRLPGL 234 P Y Q K L+ A ++ G G GK+ L + L GL Sbjct: 561 TPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGL 619
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 67.6 bits (165), Expect = 3e-14 Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 27/177 (15%) Query: 374 INLSIGPDVAIEDDDVHAWTSVIDHLLSDGSTFMTIAAGNNGTRDSIVQLDRVQVPSDCV 433 I++S+G +DV + ++ M AAGN G D + D + P Sbjct: 144 ISMSLGGP-----EDVPELHEAVKKAVASQILVM-CAAGNEGDGDD--RTDELGYPGCYN 195 Query: 434 NAVTVGAANCTSSAWARASYSARGPGRSPGVIKPDLMAFGGGKQYFHALAPGIKHNLVPL 493 ++VGA + + +S DL+A G L+ Sbjct: 196 EVISVGA---INFDRHASEFSNSNNE-------VDLVAPGED-----ILSTVPGGKYATF 240 Query: 494 LGTSFAAPYVLRAAVGVRAILG----PDLSPLAIKALLIHAADRNGHDTIDVGWGKI 546 GTS A P+V A ++ + DL+ + A LI G+ G G + Sbjct: 241 SGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPKMEGNGLL 297
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 108 bits (272), Expect = 7e-31 Identities = 76/248 (30%), Positives = 112/248 (45%), Gaps = 14/248 (5%) Query: 5 ILVTGSSRGIGRAIALRLAQAGYDLILHCRTGRSEAEAVQAEVVALGRQARVLQFDVSDR 64 +TG+++GIG A+A LA G I + E V + + A R A DV D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAH-IAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 65 AACKAILEQDVETHGAYYGVVLNAGLTRDGAFPALSDDDWDQVLRTNLDGFYNVLHPLTM 124 AA I + G +V AG+ R G +LSD++W+ N G +N Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS-VS 128 Query: 125 PMIRRRAAGRIVCITSVSGLIGNRGQVNYSASKAGLIGAAKALAIELGKRKITVNCVAPG 184 + R +G IV + S + Y++SKA + K L +EL + I N V+PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 185 LIDTAM-----LDENVPVD------ELLKM-IPAQRMGTPEEVAGAVNFLMSAEASYITR 232 +T M DEN E K IP +++ P ++A AV FL+S +A +IT Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 233 QVLAVNGG 240 L V+GG Sbjct: 249 HNLCVDGG 256
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 42.1 bits (99), Expect = 9e-06 Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 33/167 (19%) Query: 634 VFAHTQISAAELKLASCVLIVLLLIAPF--GFGGAL-RIVALPLLAALCSLASLGWRGQP 690 F I L +++V L++ F L +A+P+ L + A L G Sbjct: 331 PFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPV-VLLGTFAILAAFGYS 389 Query: 691 LTLFSLFGLLLVTAISVDYAILMRE----------------------QIGGAAVSLLGTL 728 + ++FG++L + VD AI++ E QI GA V + L Sbjct: 390 INTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVL 449 Query: 729 LAAVTTWLSFGLLAVSGTPAISNFGLSVSLGLAFSFLLA----PWAS 771 A FG S F +++ +A S L+A P Sbjct: 450 SAVFIPMAFFG---GSTGAIYRQFSITIVSAMALSVLVALILTPALC 493 Score = 33.3 bits (76), Expect = 0.004 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 647 LASCVLIVLLLIAPFGFGGALRIVALPL-LAALCSLASLGWRGQPLTLFSLFGLLLVTAI 705 S V++ L L A + V L + L + L + Q ++ + GLL + Sbjct: 877 AISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGL 936 Query: 706 SVDYAILMRE 715 S AIL+ E Sbjct: 937 SAKNAILIVE 946 Score = 33.3 bits (76), Expect = 0.004 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 16/151 (10%) Query: 259 GATLGILLLL--LLAFRRWSVLLAFVPVVVGMLFGAVACVALFG-SMHVMTLVLGSSLIG 315 L L++ L R + VPVV L G A +A FG S++ +T+ IG Sbjct: 347 AIMLVFLVMYLFLQNMRATLIPTIAVPVV---LLGTFAILAAFGYSINTLTMFGMVLAIG 403 Query: 316 VAVDYP------LHYLSKSWSLKPW----RSWPALRLTLPGLTLSLITSCIGYLALAWTP 365 + VD + + L P +S ++ L G+ + L I + Sbjct: 404 LLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGST 463 Query: 366 FPALTQIAVFSAAGLIGAYLTAVCLLPALLA 396 Q ++ + + + L A+ L PAL A Sbjct: 464 GAIYRQFSITIVSAMALSVLVALILTPALCA 494
>SECA#SecA protein signature. Length = 901 Score = 33.7 bits (77), Expect = 0.003 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Query: 212 IEVTPPNTTVERIEQ--RVFRLAANHKRSLLAHLITVGAWEQ-VLVFTRTKHGANRLAEY 268 V P N + R + V+ A ++++ + A Q VLV T + + ++ Sbjct: 409 TVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNE 468 Query: 269 LDKHGLAAVAIHG-NKSQNARTKALADFKAGDVRIMVATDIAARGLDI 315 L K G+ ++ + A A A + A + +AT++A RG DI Sbjct: 469 LTKAGIKHNVLNAKFHANEAAIVAQAGYPAA---VTIATNMAGRGTDI 513
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 27.1 bits (60), Expect = 0.020 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 25 LLRWIDEEAAIYAIVQLGNQRVVTKYISEINFVSASRQGDIIELGITATEFGRTS-ITLK 83 +LR A I I Q+ R+V I+F S G + GR S +TL Sbjct: 78 VLRKYISNAKIVDIHQINQDRIV-----VIDFESTDELGFNSIYSLIIEIMGRHSNMTLI 132 Query: 84 CQVRNKI 90 + N I Sbjct: 133 RKRDNII 139
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 65.0 bits (158), Expect = 2e-14 Identities = 39/251 (15%), Positives = 75/251 (29%), Gaps = 43/251 (17%) Query: 20 RLGFTMMIAALIHLAVILGVGFTYVKPEQISQTLEITLATFKSEEKPKQADFLAQDDQQG 79 R + +++ IH AV+ G+ +T V I L +P +A D + Sbjct: 13 RFPWPTLLSVCIHGAVVAGLLYTSV-------HQVIELPA---PAQPISVTMVAPADLE- 61 Query: 80 SGTLDKAETLKTTELAPYQ-DTKVNKVTPPPASKPVVKQEAPKTAVATTAPSQQKTVAKR 138 A V + P P P +EAP + K + Sbjct: 62 ------------PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK 109 Query: 139 DEVKPEPTTKAAPTFDSLELSNEIASLEAELSTEQQLYAKRPKIHRLNAASTMRDKGAWY 198 +P+ K + P + A+ K Sbjct: 110 KVEQPKRDVKPVES-----------------RPASPFENTAPARPTSSTATAATSKPVTS 152 Query: 199 KDDWRKKVERVGNLNYPEEARRKQIYGNLRLLVSINRDGSLYEVLVLESSGQPLLDQAAQ 258 + + R YP A+ +I G +++ + DG + V +L + + ++ + Sbjct: 153 VASGPRALSRN-QPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVK 211 Query: 259 RIVRLAAPFAP 269 +R + P Sbjct: 212 NAMR-RWRYEP 221
>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C signature. Length = 170 Score = 28.3 bits (63), Expect = 0.025 Identities = 11/28 (39%), Positives = 14/28 (50%) Query: 196 IMAQGYLPAIKDGDKRILMVDGEPVPYC 223 + A LPAI+ +L D PV YC Sbjct: 30 LFAINVLPAIQANQYVLLTRDDYPVAYC 57
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.1 bits (169), Expect = 6e-17 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 2/117 (1%) Query: 6 SALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADNHPRIIFVDIMMPRLD 65 + ++V DD IR L AG +V + IA ++ D++MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 66 GYQTCALIKNNRAFKSTPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIK 122 + IK R PV+++S+++ K G+ +L KPF EL+ I Sbjct: 62 AFDLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 5e-21 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 2 ARILIVDDSPTEMYKLTGMLEKHGHEVLKAENGADGVALARQEKPDAVLMDIVMPGLNGF 61 A IL+ DD L L + G++V N A D V+ D+VMP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QATRQLTKDADTNMIPVIMITTKDQETDKVWGKRQGARDYLTKPVDEETLMKTLNAVLA 120 ++ K +PV++++ ++ + +GA DYL KP D L+ + LA Sbjct: 64 DLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.7 bits (168), Expect = 1e-13 Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 2/113 (1%) Query: 1867 VMVVDDSVTVRKVTSRLLERHGMHVLTAKDGIDAMTLLQEHTPDIMLLDIEMPRMDGFEV 1926 ++V DD +R V ++ L R G V + + D+++ D+ MP + F++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 1927 ASQIRQDEQLKELPIIMITSRSGQKHRDRAMAVGVNEYLSKPYQETVLLESIA 1979 +I+ + +LP++++++++ +A G +YL KP+ T L+ I Sbjct: 66 LPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>cloacin#Cloacin signature. Length = 551 Score = 30.5 bits (68), Expect = 0.015 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 18/65 (27%) Query: 4 NEPGGNSNNQDPWGGKRRGGDRKGPPDLDEAFRKLQESLKGLFGGGNKRGSDGGGSGGGS 63 ++ G S+ +PWGG G G G G+ G G SGGGS Sbjct: 34 SDGSGWSSENNPWGGGSGSGIHWGG------------------GSGHGNGGGNGNSGGGS 75 Query: 64 GKGGG 68 G GG Sbjct: 76 GTGGN 80
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 31.3 bits (71), Expect = 0.007 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 28/152 (18%) Query: 101 LYWIIPLLIVIAIVFPIFANKYILTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAI 160 L W++ L I + + ++ L ++ GL++ LLG +++ + G + GY+ +++ Sbjct: 140 LTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAM-AGYLVLWSL 198 Query: 161 -GAYGLALGYQYLG---------LGFW---SALPLAAIAAALAGCILGFPVLRMH----- 202 A+ L G + +G LG W ALP+ + ++L G +G ++ + Sbjct: 199 YWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRNHHQS 258 Query: 203 -----GDYLAI---VTLGFGE-IIRLVLNNWL 225 G YLAI + L +G+ I R L N+L Sbjct: 259 KPIPFGPYLAIAGWIALLWGDSITRWYLTNFL 290
>PF05272#Virulence-associated E family protein Length = 892 Score = 36.6 bits (84), Expect = 1e-04 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 37 LIGPNGAGKTTVFNCLTGFYKATGGRIELHTRDKTTNVIR-----LLGE--PFKATDFVS 89 L G G GK+T+ N L G + ++ T + I L E F+ D + Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAFRRADAEA 660 Query: 90 PKSFFSR 96 K+FFS Sbjct: 661 VKAFFSS 667
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 81.6 bits (201), Expect = 1e-20 Identities = 59/243 (24%), Positives = 99/243 (40%), Gaps = 14/243 (5%) Query: 5 VFITGATSGFGEACARRFAEAGWSLVLTGRREDRLAALSAELSKQTKV-HTLVLDVRDRK 63 FITGA G GEA AR A G + ++L + + L + + DVRD Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 64 AMESAIADLPEEFGSIRGLINNAGLALGIDPAPKCDLDDWDTMIDTNVKGLVYTTRLLLP 123 A++ A + E G I L+N AG+ L ++W+ N G+ +R + Sbjct: 71 AIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 124 RLIAHGRGASIVNLGSVAGNYPYPGGNVYGGTKAFVGQFSLNLRNDLIGTGVRVTNLEPG 183 ++ R SIV +GS P Y +KA F+ L +L +R + PG Sbjct: 130 YMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 184 LCESEFSLV----------RFGGDQAKYDATYAGAEPIQPQDIADTIFWIMNTPA-HVNI 232 E++ G + + +P DIAD + ++++ A H+ + Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 233 NSL 235 ++L Sbjct: 249 HNL 251
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 41.7 bits (98), Expect = 1e-05 Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 44/244 (18%) Query: 570 VIGQEEAVVAVSNAVRRSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALAEFLFDTEEAM 629 ++G+ A+ + + R +D + M G +G GK + +AL ++ Sbjct: 139 LVGRSAAMQEIYRVLAR--LMQTD-----LTLMITGESGTGKELVARALHDYGKRRNGPF 191 Query: 630 VRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSL-------ILLDEVEKA 682 V I+M+ + L G+E+G + T A R + LDE+ Sbjct: 192 VAINMAAIPRDLIESEL-------FGHEKGAF-TGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 683 HSDVFNILLQVLEDG---RLTDSHGRTVDFRNTVIVMTSNLGSAQIQELVGDREAQRAAV 739 D LL+VL+ G + D R IV +N +++ + Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN---KDLKQSINQ-------- 289 Query: 740 MDAVGTHFRPEFVNRIDEVVIFEPLARDQIAGITDIQLGRLRKRLAERELALTLSPEALD 799 FR + R++ V + P RD+ I D+ +++ E EAL+ Sbjct: 290 -----GLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALE 344 Query: 800 KLIA 803 + A Sbjct: 345 LMKA 348 Score = 35.2 bits (81), Expect = 0.001 Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 34/179 (18%) Query: 151 DPNVEESRQALDKYTVDLTKRAEEG-KLDPVIGRDDEIRRTIQVLQRRTKNN-PVLI-GE 207 + +AL + +K ++ P++GR ++ +VL R + + ++I GE Sbjct: 109 TELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGE 168 Query: 208 PGVGKTAIAEGLAQR----------IINGEVPDGLRGKRLLSLDMGALI-AGAKYRGEFE 256 G GK +A L I +P L L + GA A + G FE Sbjct: 169 SGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFE 228 Query: 257 ERLKSLLNELSKQEGQIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATT 315 + LF+DE+ G+ MDA L L +GE VG T Sbjct: 229 QAEGGT------------LFLDEI--------GDMPMDAQTRLLRVLQQGEYTTVGGRT 267
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 25.5 bits (56), Expect = 0.045 Identities = 9/40 (22%), Positives = 22/40 (55%) Query: 16 PSIPQELIEQFVKGPMSAEAIQDASMAFKKALIERALGAE 55 + ++ +F + M+ E IQ + + + L+E++LG + Sbjct: 60 SELKDNVLLEFKELMMAQEFIQKGGIDYARELLEKSLGTQ 99
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 90.8 bits (225), Expect = 1e-24 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 10/186 (5%) Query: 17 RRPAPRGELRREALLEAALSVFSQVGYAHASMKDIAKLAGVTAAGLLYHFPNKTALLNAV 76 R+ + R+ +L+ AL +FSQ G + S+ +IAK AGVT + +HF +K+ L + + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 77 LDRKESEADQYFDQLNARTS-------LSGFIKSIRVIFRRSIETQMISQAFMMLNVESL 129 + ES + + A+ I + ++ + E + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLM--EIIFHKCEFV 120 Query: 130 GQLHPAHDRFQTWFKNVHSAIASYLESLIEEGEIR-STQTSVVAREICAVMDGTQLQWLR 188 G++ + + I L+ IE + T A + + G WL Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 189 RPDDMD 194 P D Sbjct: 181 APQSFD 186
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 44.7 bits (105), Expect = 2e-06 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 22/134 (16%) Query: 386 EDKSGAQGLKAEYFNNVDLSGDPAVTRTEPGVNWDWSTGSNSTVNGVSNTTGFNPAGGSF 445 E +S +QGL YF++++ VT D S S+ N S F Sbjct: 40 ESESSSQGLLGYYFSDLNFQAPMVVT---SSTTGDLSIPSSELENIPSENQYFQ------ 90 Query: 446 SARFTGVIKPTVSGDQVFKIHADGAYRLWVNDELILESDGEPVALDLVYDPPKSGKAVHL 505 SA ++G IK S + F AD +WV+D+ ++ + + + L Sbjct: 91 SAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQEVI-------------NKASNSNKIRL 137 Query: 506 KAGQEYSVKLEYRR 519 + G+ Y +K++Y+R Sbjct: 138 EKGRLYQIKIQYQR 151
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.5 bits (165), Expect = 7e-14 Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 8/158 (5%) Query: 535 DRPLILVAEDHPTNQVLIKSQLDRLGFDCEIAANGSEALHQFNENVHCMVITDCYMPVMD 594 ILVA+D + ++ L R G+D I +N + +V+TD MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 595 GYTLAEKLRSKLSGRHFPILAITASILIEEQQRCTSAGIDECLLKPLSLDTLREALSRLL 654 + L +++ P+L ++A + + G + L KP L L + R L Sbjct: 62 AFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 655 PASKIPMQVQPNEIERSGDWQALLGLLDESPEFKELIN 692 + + + D Q + L+ S +E+ Sbjct: 120 A------EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYR 151
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.1 bits (130), Expect = 7e-11 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 4/123 (3%) Query: 4 RIIIADDHPVVLLGAKIIVEKGGSGLVVGQAENPEELEAILKSTPCDLLVTDFAMPNSRR 63 I++ADD + + + +G V N L + + DL+VTD MP Sbjct: 5 TILVADDDAAIRTVLNQALSR--AGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP--DE 60 Query: 64 DGLIMLKRLRRLHPELKIIVLTSIRNSSLILGILNLGIQGVVEKNADQFELIEAIKKVAR 123 + +L R+++ P+L ++V+++ + G + K D ELI I + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 124 HQR 126 + Sbjct: 121 EPK 123
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 30.0 bits (67), Expect = 0.025 Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 31/116 (26%) Query: 224 AGLVGANN-FGNR--FTGRGQGFGTVR-------LDNPSG----------FGDQLQISGI 263 A + G N +GN+ F G GFGT+R L N G+ L+ISG+ Sbjct: 82 ASVAGTNTGWGNKQSFVGLKGGFGTIRAGSLNSPLKNTGANVNAWESGKFTGNVLEISGM 141 Query: 264 LSERLDYESVSYSAPVGYDGLRASVGYGQLHYQLGKEFADLDARGQSRTLYAGLSY 319 Y SV Y +P + G SV Y ++ + + GL+Y Sbjct: 142 AQREHRYLSVRYDSPE-FAGFSGSVQYAPKD----------NSGSNGESYHVGLNY 186
>PF05860#haemagglutination activity domain. Length = 117 Score = 65.6 bits (160), Expect = 9e-15 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 13/114 (11%) Query: 62 VEPGALPTGGKVVGGQALLHQQGNQLVVE---QHSDRAILDWQSFDIGQNASVRFNQPGS 118 LP + GN ++E Q +Q F + + + FN P + Sbjct: 4 TPDTTLPINSNITTE-------GNTRIIERGTQAGSNLFHSFQEFSVPTSGTAFFNNPTN 56 Query: 119 NATALNRVTGGGGQSLIQGSLSANGR--VYLVNGAGVLFGPSAQVNTGGLVAST 170 ++RVT GG S I G + AN ++L+N G++FG +A+++ GG + Sbjct: 57 IQNIISRVT-GGSVSNIDGLIRANATANLFLINPNGIIFGQNARLDIGGSFVGS 109
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.040 Identities = 9/44 (20%), Positives = 21/44 (47%) Query: 276 NAITLLLDVLFSVVFIAVMFYYSGWLTLIVLLSLPLYILVSVLI 319 + L + + V + +F + TLI +++P+ +L + I Sbjct: 339 EVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAI 382
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 357 bits (917), Expect = e-121 Identities = 151/468 (32%), Positives = 254/468 (54%), Gaps = 26/468 (5%) Query: 9 LLQRYRRVWRQSWRQRREMDAPKRLAHEVQFLPAALELQDKPSHPAPRIFMWAIMAFAAL 68 L RY+ VW ++W+ R+++D P R E +FLPA LEL + P PR+ + IM F + Sbjct: 11 FLLRYKLVWSETWKIRKQLDTPVREKDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVI 70 Query: 69 ALLWACLGKIYVVATASGKIIPSGKTKTIQSSETAVVKAIHVRDGQSVKAGQLLLELDSK 128 A + + LG++ +VATA+GK+ SG++K I+ E ++VK I V++G+SV+ G +LL+L + Sbjct: 71 AFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL 130 Query: 129 SADADVGRVRSDLLAARIDSARAAAMLDAINQRKPPR-DLTGTIV--DADPMHVLAAERW 185 A+AD + +S LL AR++ R + +I K P L + VL Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 186 LQGQYQEYRSSLDLVDAEIQQRQADIQAARIQVTSLQKTLPIATKLASDYENLLKKQYIA 245 ++ Q+ +++ + + +++A+ ++ + + D+ +LL KQ IA Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 246 RHAYLEKEQARLDLERQLSVQQASVLQSTAARQEAERRREGVVAQTRRAMLDLLQQADQK 305 +HA LE+E ++ +L V ++ + Q + A+ + V + +LD L+Q Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 306 IASFNQDLTKARYQEDL-----------------------TPAQPLMVLVPDGQPVEVEA 342 I +L K ++ T A+ LMV+VP+ +EV A Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 343 MLENKDVGFVRAGQPVTVKVETFTFTKYGTIDGEVISVSNDAIEDEKRGLIYSSKIRLNS 402 +++NKD+GF+ GQ +KVE F +T+YG + G+V +++ DAIED++ GL+++ I + Sbjct: 371 LVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEE 430 Query: 403 DTLNVNCVDIKLSPGMAVTAEVKTNKRRVIEYFLSPLQQHALESLRER 450 + L+ +I LS GMAVTAE+KT R VI Y LSPL++ ESLRER Sbjct: 431 NCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESLRER 478
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 134 bits (339), Expect = 5e-33 Identities = 98/386 (25%), Positives = 157/386 (40%), Gaps = 56/386 (14%) Query: 3297 GGSGNDVLNGGAGNDVLDGGAGNDRLDGGAGDDIYLFGKGSGQDVIYYANEARTGKVDTI 3356 G G+D + AG+ + G G+D + D YL G+ Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATE--------------- 660 Query: 3357 QLVGLNAGDISISRAGYDLVLRVNGTTDSLRVVYHFLSDATSGYQIDRIQFADGNIWGQE 3416 AG+ +++R V + V ++ T + N+ + Sbjct: 661 ------AGNYTVTRVLGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETD 714 Query: 3417 TIKSLA-LQGTDADQYLEGYGTDDLIEAGAGDDTVYGAAGNDKLFGNSGDDVVNGDDGDD 3475 + S+ L GT G D+ GDD + G GND+L+G+ G+D ++G +GDD Sbjct: 715 NLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDD 774 Query: 3476 LVQGGSGNDTLNGGAGNDVLDGGTGND------------ILNGGAGND---------LLD 3514 + GG GND L G AGN+ L+GG G+D +L GG GND LLD Sbjct: 775 QLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLD 834 Query: 3515 GGAGNDRLDGGAGDDTYLFGKGSGQDTIYYANETRAGKVDTIQLVGLGAADISVSRDGSD 3574 GG G+D L GG G+D Y + G G I GK D + L + D++ R+G+D Sbjct: 835 GGEGDDLLKGGYGNDIYRYLSGYGHHIID----DDGGKEDKLSLADIDFRDVAFKREGND 890 Query: 3575 LV-------IRVNGTTDSLRVVYHFAGDATSG--YQIDRIQFADGSAWDQEAIKSQVLQG 3625 L+ + G + + F ++ ++I++I G +++K + Sbjct: 891 LIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQ 950 Query: 3626 SDADQYLAGYATDDLIDGGAGDDTIV 3651 ++ Y D L G GD + Sbjct: 951 QRNNKASYVYGNDALAYGSQGDLNPL 976 Score = 126 bits (317), Expect = 1e-30 Identities = 103/411 (25%), Positives = 163/411 (39%), Gaps = 48/411 (11%) Query: 3867 ILNGGAGNDVLDGGAGNDRLDGGAGDDTYLFGKG-SGQDTIYYANETRAGKVDQVKLVGL 3925 + G G+D + AG+ + G G D + K +G TI T AG +++G Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLG- 671 Query: 3926 NAADVSVVREGYDLVIRINGTTDTLRVMYHFMSDATAGYQID------RIEFADGSNWD- 3978 DV V++E G + G + +E G+ Sbjct: 672 --GDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRAD 729 Query: 3979 -----------QSAIKAQVLTRSDAAQVLTGFASDDLIDGGADDDTLYGGAGQDRLLGGD 4027 A ++ +D L G +D + GG DD LYGG G D+L+G Sbjct: 730 KFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVA 789 Query: 4028 GADSLNGDEGDDY------------LNGGAGNDSLAGGSGNDVLDGGAGNDRLDGGAGDD 4075 G + LNG +GDD L GG GND L G G D+LDGG G+D L GG G+D Sbjct: 790 GNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGND 849 Query: 4076 TYLFGKGSGQDTIYYANESRAGKVDQVKLVDLNAADVSVARDGYDLV-------IRILGT 4128 Y + G G I GK D++ L D++ DV+ R+G DL+ + +G Sbjct: 850 IYRYLSGYGHHIID----DDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGH 905 Query: 4129 TDTLRVVYHFMGDAT--AGYQIDRIAFADGGFWDQTAIKAQVLQGTEADETLSGTGSDDV 4186 + + F ++ + ++I++I G ++K + ++ G+D + Sbjct: 906 KNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNKASYVYGNDAL 965 Query: 4187 IYAAAGDDSVNGGSGNDTLSGGSGADTLNGEDGNDVLN-GGDGKDSLYGGN 4236 Y + GD + + +S D +L G+ D YG N Sbjct: 966 AYGSQGDLNPLINEISKIISAAGSFDVKEERTAASLLQLSGNASDFSYGRN 1016 Score = 117 bits (295), Expect = 6e-28 Identities = 84/339 (24%), Positives = 135/339 (39%), Gaps = 47/339 (13%) Query: 4780 GGDGNDVLDGGAGNDQLNGGDGDDTYLFGKG-AGQDTIYYANEARVGKLDTVKLADLNVS 4838 GDG+D + AG+ + G G D + K G TI G + L Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTR--VLGGD 673 Query: 4839 DVSITRDSSDLLIRVNGTTDNLRVMNH-FAEDATSGY-QIDQLQFADGTLWSQSTIK--- 4893 + + + V T+ + ++ F + D L + + + K Sbjct: 674 VKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFG 733 Query: 4894 ---SQVLLGNSSDQTLRGYASDDVINAGDGDDTVSGGAGKDSLYGGKGIDMLYGEEGN-- 4948 + + G D + G +D + G+DT+SGG G D LYGG G D L G GN Sbjct: 734 SKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNY 793 Query: 4949 -------------------DRLYGEAGNDTLYGGAGNDVLNGGTGNDSLAGGDGSDTYEF 4989 + L+G GND LYG G D+L+GG G+D L GG G+D Y + Sbjct: 794 LNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRY 853 Query: 4990 NIGSGRDVINNYDVSGGTDALQFGTDVSLEDLWFRRSGSDL-------EVSIIDTNDKVL 5042 G G +I D G D L D+ D+ F+R G+DL V I + + Sbjct: 854 LSGYGHHII--DDDGGKEDKLSL-ADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGIT 910 Query: 5043 VSNWYA-----ANDYQVDQFKTADGKTLLDSQVQSLVDK 5076 NW+ ++++++Q G+ + ++ ++ Sbjct: 911 FRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEY 949 Score = 114 bits (287), Expect = 5e-27 Identities = 105/412 (25%), Positives = 164/412 (39%), Gaps = 74/412 (17%) Query: 4532 VLQGSDADETLSGTGGNDVIDAGAGDDVINGAAGND-TLTGNAGADTLNGGEGNDVLLGG 4590 D D+ + + G+ I AG G DV+ + LT + T G +LGG Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGG 672 Query: 4591 AGNDSLSGGVGNDSLDGGAGNDQLDGGEGDDTYLFGKGAGQDTIYYAYENREGKLDTIKL 4650 L V + G ++ + T++ GK + Y+ E G K Sbjct: 673 DVK-VLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKF 731 Query: 4651 TDLNASDVSVRRDGNDLIIRVLGSTDSLRVVYHFQSDAAGGYQIDRLVFADGSVWDQTQI 4710 +D+ DG+DLI Sbjct: 732 FGSKFTDIFHGADGDDLI------------------------------------------ 749 Query: 4711 KSQVLQGSDSDETLSGTSGNDVISAGAGDDTVNGGSGNDTLSGGAGADMLNGDAGNDLLQ 4770 +G+D ++ L G GND +S G GDD + GG GND L G AG + LNG G+D Q Sbjct: 750 -----EGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQ 804 Query: 4771 ------------GGASNDTLYGGDGNDVLDGGAGNDQLNGGDGDDTYLFGKGAGQDTIYY 4818 GG ND LYG +G D+LDGG G+D L GG G+D Y + G G I Sbjct: 805 VQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDD 864 Query: 4819 ANEARVGKLDTVKLADLNVSDVSITRDSSDLL-------IRVNGTTDNLRVMNHFAEDAT 4871 GK D + LAD++ DV+ R+ +DL+ + G + + N F +++ Sbjct: 865 DG----GKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESG 920 Query: 4872 SG--YQIDQLQFADGTLWSQSTIKSQVLLGNSSDQTLRGYASDDVINAGDGD 4921 ++I+Q+ G + + ++K + +++ Y +D + GD Sbjct: 921 DISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNKASYVYGNDALAYGSQGD 972 Score = 113 bits (283), Expect = 2e-26 Identities = 99/426 (23%), Positives = 165/426 (38%), Gaps = 86/426 (20%) Query: 4415 NGGLGNDILDGGAGNDRLDGGDGDDTYLFARGAGQDTVYYAYESRIGKLDTVKLTELNAV 4474 + G G+D + AG+ + G G D + + G L A Sbjct: 615 HLGDGDDKVFLSAGSANIYAGKGHDVVYYDKT------------DTGYLTIDGTKATEAG 662 Query: 4475 DVSVRRDGSDLLILVLGSTDSLRVMSHFTNDATYGYQIDRIQFADGSFWDQSAIKN---- 4530 + +V R + G L+ + + + G + ++ Q+ F KN Sbjct: 663 NYTVTRV-------LGGDVKVLQEVVK-EQEVSVGKRTEKTQYRSYEF-THINGKNLTET 713 Query: 4531 ------QVLQGSDADETLSGTGGNDVIDAGAGDDVINGAAGNDTLTGNAGADTLNGGEGN 4584 + L G+ + G+ D+ GDD+I G GND L G+ G DTL+GG G+ Sbjct: 714 DNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGD 773 Query: 4585 DVLLGGAGNDSLSGGVGNDSLDGGAGNDQLD----------------------------- 4615 D L GG GND L G GN+ L+GG G+D+ Sbjct: 774 DQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLL 833 Query: 4616 ----------GGEGDDTYLFGKGAGQDTIYYAYENREGKLDTIKLTDLNASDVSVRRDGN 4665 GG G+D Y + G G I + GK D + L D++ DV+ +R+GN Sbjct: 834 DGGEGDDLLKGGYGNDIYRYLSGYGHHIID----DDGGKEDKLSLADIDFRDVAFKREGN 889 Query: 4666 DLI-------IRVLGSTDSLRVVYHFQSDAAGG--YQIDRLVFADGSVWDQTQIKSQVLQ 4716 DLI + +G + + F+ ++ ++I+++ G + +K + + Sbjct: 890 DLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKAL-E 948 Query: 4717 GSDSDETLSGTSGNDVISAGAGDDTVNGGSGNDTLSGGAGA-DMLNGDAGNDLLQ-GGAS 4774 + S GND ++ G+ D + + AG+ D+ LLQ G + Sbjct: 949 YQQRNNKASYVYGNDALAYGSQGDLNPLINEISKIISAAGSFDVKEERTAASLLQLSGNA 1008 Query: 4775 NDTLYG 4780 +D YG Sbjct: 1009 SDFSYG 1014 Score = 111 bits (280), Expect = 4e-26 Identities = 93/346 (26%), Positives = 143/346 (41%), Gaps = 46/346 (13%) Query: 2782 KGGDGRDTLSGGDGNDTLDGGAGNDSLDGGYGSDTYVFRKGSGQDTINNYSYNDTTVGKL 2841 GDG D + G+ + G G+D + Y+ G+ NY+ G + Sbjct: 615 HLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDV 674 Query: 2842 DVIRLEGLNASDVAMRRESDDLIIQIKDSGETLRVSSHFYPYANYGYGIDQVQFADGSVL 2901 V++ E + +V++ + ++ Q + T + N + V+ G+ Sbjct: 675 KVLQ-EVVKEQEVSVGKRTEK--TQYRSYEFTHINGKNLTETDN----LYSVEELIGTTR 727 Query: 2902 TNAQIRSA---MLSGSEGDDTVSGYDSADSLFGQSGNDVLSGRQGDDILDGGDGKDTLYG 2958 + S + G++GDD + G D D L+G GND LSG GDD L GGDG D L G Sbjct: 728 ADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIG 787 Query: 2959 EDGDDT---------------------LLGGTSSDTLSGGYGNDLLDGGSGNDSLDGGFG 2997 G++ L GG +D L G G DLLDGG G+D L GG+G Sbjct: 788 VAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYG 847 Query: 2998 SDTYVFRKGSGQDTISNYAYNDTTVGKLDVIRLEGLNVSDVVIRRESDDLVIQIKDS--- 3054 +D Y + G G I D GK D + L ++ DV +RE +DL++ + Sbjct: 848 NDIYRYLSGYGHHII------DDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVL 901 Query: 3055 ----DETLRVSSHFY--ASAIYGYGIDQIQFADGVVWNKDDLNANL 3094 + + F + I + I+QI G + D L L Sbjct: 902 SIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKAL 947 Score = 110 bits (277), Expect = 9e-26 Identities = 95/358 (26%), Positives = 145/358 (40%), Gaps = 32/358 (8%) Query: 563 GGDSLYGGGGSDSLDGGSGNDYLNAGESSDIYRFSRGWGQDSINNYDVSSDKTDTIEFAA 622 G D ++ GS ++ G G+D + ++ Y G NY V+ ++ Sbjct: 619 GDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKVLQ 678 Query: 623 DILPTDITVARSGYDLVLLLKSSTDKITVSNYFQNDG------ITPYALENIHFADGTTW 676 +++ + I N + D + + F T Sbjct: 679 EVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKFTD 738 Query: 677 TLNQLKTMALIT-TEGNDNVWGYATDDILSGSLGDDRLSGEAGDDTLLGEAGNDYLAGGE 735 + LI +GND ++G +D LSG GDD+L G G+D L+G AGN+YL GG+ Sbjct: 739 IFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGD 798 Query: 736 GND------------TLLGNADNDTLYGDSGNDELDGGAGNDYLTGGDGSDVYRFSRGWG 783 G+D L G ND LYG G D LDGG G+D L GG G+D+YR+ G+G Sbjct: 799 GDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYG 858 Query: 784 QDSISNYDSSAEKTDAIEFAPDILPADITVTRSNSELILSLK-------NSTDKITVAGY 836 I D K D + A DI D+ R ++LI+ + IT + Sbjct: 859 HHII---DDDGGKEDKLSLA-DIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNW 914 Query: 837 FQNDG--ITPYALEQIRFADGTTWNLDQIKALSILTTDGNDNVWGYASDDILKGGAGA 892 F+ + I+ + +EQI G D +K N + Y +D + G G Sbjct: 915 FEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNKASYVYGNDALAYGSQGD 972 Score = 109 bits (274), Expect = 2e-25 Identities = 95/305 (31%), Positives = 130/305 (42%), Gaps = 40/305 (13%) Query: 1521 GGNGDDVLDGGTGNDTLEGGKGSDTYIFAKG-AGSDAIDNSSYNDITANKLDVVRLDGLN 1579 G+GDD + G+ + GKG D + K G ID + A V R+ L Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGT--KATEAGNYTVTRV--LG 671 Query: 1580 SEDVSLRRESDDLIVQVRQTGESLRIR-SHFASDSGSWSYAIDQL-------------KF 1625 + L+ + V V + E + R F +G D L KF Sbjct: 672 GDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKF 731 Query: 1626 ADGTIWDRAHITAA--LLDGTDGNDTITGYDTADTLSGLAGNDTLNGRNGNDLLDGGDGK 1683 D H L++G DGND + G DTLSG G+D L G +GND L G G Sbjct: 732 FGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGN 791 Query: 1684 DSLNGEAGDD------------FLLGGAGNDTLSGGEGNDTLDGGTGNDSLEGGIGSDTY 1731 + LNG GDD L GG GND L G EG D LDGG G+D L+GG G+D Y Sbjct: 792 NYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIY 851 Query: 1732 IFRKGSGQDIVYNYAYNESTPNKLDVVRLEGLTAEDVSIRRESDDLVIQIRQTGETLRVS 1791 + G G I+ + E D + L + DV+ +RE +DL++ + G L + Sbjct: 852 RYLSGYGHHIIDDDGGKE------DKLSLADIDFRDVAFKREGNDLIM-YKGEGNVLSIG 904 Query: 1792 SHFAV 1796 + Sbjct: 905 HKNGI 909 Score = 105 bits (264), Expect = 3e-24 Identities = 77/238 (32%), Positives = 106/238 (44%), Gaps = 38/238 (15%) Query: 2379 GTEVDESVVGYDSADRLLGLSGNDILYGRQGDDFLDGGDGKDTLYGEDGNDT-------- 2430 G + D+ + G D DRL G GND L G GDD L GGDG D L G GN+ Sbjct: 742 GADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDD 801 Query: 2431 -------------LQGGAGNDTLSGGYGNDLLDGGNGNDSLDGGYGSDTYVFRKGSGQDI 2477 L GG GND L G G DLLDGG G+D L GGYG+D Y + G G I Sbjct: 802 EFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHI 861 Query: 2478 ISNYAYNDTTVDKLDVIRLEGLNASDVVMRRESDDLVIQIKDSGETLRVGSH-------- 2529 I + + D + L ++ DV +RE +DL++ K G L +G Sbjct: 862 IDDDGGKE------DKLSLADIDFRDVAFKREGNDLIM-YKGEGNVLSIGHKNGITFRNW 914 Query: 2530 FYPYAN--YGYGIDQVQFADGTVLTSAQIKTALLTGTEVDESVVGYDSADRLLGLSGN 2585 F + + I+Q+ G ++T +K AL +++ Y + G G+ Sbjct: 915 FEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNKASYVYGNDALAYGSQGD 972 Score = 105 bits (264), Expect = 3e-24 Identities = 94/367 (25%), Positives = 148/367 (40%), Gaps = 40/367 (10%) Query: 1881 GGLGNDTLNGGAGNDTLDGGAGNDSLEGGKGSDTYIYRKGSGQDTISNYSYNDLTAHKLD 1940 G G+D + AG+ + G G+D + K Y+ G+ NY+ + + Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVK 675 Query: 1941 VVRLEGLNTSDVSIRRESDDLLIQIRQTGETLRISSHFTVDQSYGYAINQLQFADGTLWD 2000 V++ E + +VS+ + ++ Q R T + T + Y++ +L Sbjct: 676 VLQ-EVVKEQEVSVGKRTE--KTQYRSYEFTHINGKNLTETDNL-YSVEELIGTTRADKF 731 Query: 2001 EAQITAALLIGTESDDSITGYASGDKLSGLVGNDILSGRGGDDVLDGGDGKDTLNGEDGN 2060 + G + DD I G D+L G GND LSG GDD L GGDG D L G GN Sbjct: 732 FGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGN 791 Query: 2061 DT---------------------LLGGAGNDSLSGGIGNDVLDGGAGNDTLDGGKGSDTY 2099 + L GG GND L G G D+LDGG G+D L GG G+D Y Sbjct: 792 NYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIY 851 Query: 2100 VFGKGYGRDTISNYAYNDTTVDKLDVIRLEGLTSEDVSIQRESDDLV-------IQINQT 2152 + GYG I + + D + L + DV+ +RE +DL+ + Sbjct: 852 RYLSGYGHHIIDDDGGKE------DKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGH 905 Query: 2153 GETLRVNSHFYADQS--YGYAINQLQFANGIVWDQAQITAALLIGAESDDSITGYASDDR 2210 + + F + + I Q+ +G + + AL ++ + Y +D Sbjct: 906 KNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNKASYVYGNDAL 965 Query: 2211 VSGGDGN 2217 G G+ Sbjct: 966 AYGSQGD 972 Score = 104 bits (260), Expect = 8e-24 Identities = 96/346 (27%), Positives = 143/346 (41%), Gaps = 54/346 (15%) Query: 1149 ILYGADGNDILDGGTGNDTLDGGRGSDIYRFAKG-YGQDSINNNSYGETATDKVDAIQLD 1207 + DG+D + G+ + G+G D+ + K G +I+ G AT+ + Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTID----GTKATEAGNYTVTR 668 Query: 1208 GLNSADLRFYRSSDDLVIQIKATGDTLTVRSHFSQ--DGVTAYAVDQLRFADGSVWGGAQ 1265 L + + + + RS+ +G D L + + G + Sbjct: 669 VLGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVE-ELIGTTR 727 Query: 1266 IKAAVVQPSEEADTLTGYASADSLSGLDGNDSLSGRAGDDVLDGGNGADTLYGEDGNDTL 1325 A S+ D G D + G DGND L G G+D L GGNG D LYG DGND L Sbjct: 728 --ADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKL 785 Query: 1326 LGRAGNDSLNGGYGDD------------VLDGGSGNDS------------------LDGG 1355 +G AGN+ LNGG GDD VL GG GND L GG Sbjct: 786 IGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGG 845 Query: 1356 YGSDTYVFRKGSGQDTISNGVYNEGTVGKQDVIRLEGLNLSDISLRREYSDLIIQIKETG 1415 YG+D Y + G G I ++G GK+D + L ++ D++ +RE +DLI+ E Sbjct: 846 YGNDIYRYLSGYGHHII----DDDG--GKEDKLSLADIDFRDVAFKREGNDLIMYKGEGN 899 Query: 1416 -------DTLRVSSHFS-PSSTYYNYAIDQLQFADGTVWGVDQIKA 1453 + + + F S N+ I+Q+ G + D +K Sbjct: 900 VLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKK 945 Score = 102 bits (256), Expect = 3e-23 Identities = 84/349 (24%), Positives = 128/349 (36%), Gaps = 67/349 (19%) Query: 3688 GGAGDDVLDGAAGNDRLDGGAGDDTYLFGKG-SGQDTLYYVNEARAGKVDTIQLVGLGVS 3746 G GDD + +AG+ + G G D + K +G T+ AG Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAG------------- 662 Query: 3747 DVSVSRDGYDLVVRVNGTTDTLRVMYHFMGDATSGYQIDRIQFADGNIWGQDTIK-IQAL 3805 + +V+R V + V + T + N+ D + ++ L Sbjct: 663 NYTVTRVLGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEEL 722 Query: 3806 LGNDADQYLAGYATDDLIDAGGGDDTINGAAGNDTLIGGSGADTLSGEEGNDLLQGGAGN 3865 +G G D+ GDD I G GND L G G DTLSG G+D L GG GN Sbjct: 723 IGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGN 782 Query: 3866 DILNGGAGNDVLDGGAGNDRLD-------------------------------------- 3887 D L G AGN+ L+GG G+D Sbjct: 783 DKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLL 842 Query: 3888 -GGAGDDTYLFGKGSGQDTIYYANETRAGKVDQVKLVGLNAADVSVVREGYDLV------ 3940 GG G+D Y + G G I GK D++ L ++ DV+ REG DL+ Sbjct: 843 KGGYGNDIYRYLSGYGHHIID----DDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEG 898 Query: 3941 -IRINGTTDTLRVMYHFMSDAT--AGYQIDRIEFADGSNWDQSAIKAQV 3986 + G + + F ++ + ++I++I G ++K + Sbjct: 899 NVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKAL 947 Score = 101 bits (254), Expect = 5e-23 Identities = 91/350 (26%), Positives = 136/350 (38%), Gaps = 63/350 (18%) Query: 754 GNDELDGGAGNDYLTGGDGSDVYRFSRGWGQDSISNYDSSAEKTDAIEFAPDILPADITV 813 G+D++ AG+ + G G DV + + D+ D + + TV Sbjct: 619 GDDKVFLSAGSANIYAGKGHDVVYYDKT---------DTGYLTIDGTKATE---AGNYTV 666 Query: 814 TRSNSELILSLKNSTDKITVAGYFQNDGITPYALEQIRFADGTTWNLDQIKALSILTTDG 873 TR + L+ + V+ + + + E D + ++ Sbjct: 667 TRVLGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSV------- 719 Query: 874 NDNVWGYASDDILKGGAGADSLSGEAGNDALFGEDGNDSLYGGVGADQLSGGEGGDYLTG 933 + + G D G D G G+D + G DGND LYG G D LSGG G D L G Sbjct: 720 -EELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYG 778 Query: 934 GDGNDTLLGDAGNDTLYGDSGNDLLE------------GGTGND---------------- 965 GDGND L+G AGN+ L G G+D + GG GND Sbjct: 779 GDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEG 838 Query: 966 --YLIGGEGSDVYRFNRGWGQDSINNYDSSAGKTDAIEFAADILPVDIVVTRSYNDLVLS 1023 L GG G+D+YR+ G+G I D GK D + ADI D+ R NDL++ Sbjct: 839 DDLLKGGYGNDIYRYLSGYGHHII---DDDGGKEDKLSL-ADIDFRDVAFKREGNDLIMY 894 Query: 1024 LK-------HSTDKVTISGYFQNDGDTP--YTVEQIRFADGTHWNVEQIK 1064 + +T +F+ + + +EQI G + +K Sbjct: 895 KGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLK 944 Score = 100 bits (250), Expect = 1e-22 Identities = 95/352 (26%), Positives = 142/352 (40%), Gaps = 51/352 (14%) Query: 1335 NGGYGDDVLDGGSGNDSLDGGYGSDTYVFRKGSGQDTISNGVYNEGTVGKQDVIRLEGLN 1394 + G GDD + +G+ ++ G G D + K DT + + L Sbjct: 615 HLGDGDDKVFLSAGSANIYAGKGHDVVYYDKT---DTGYLTIDGTKATEAGNYTVTRVLG 671 Query: 1395 LSDISLRREYSDLIIQIKETGDTLRV-SSHFSPSSTYYNYAIDQLQFADGTVWGVDQIKA 1453 L+ + + + + + + S F+ + D L + + +A Sbjct: 672 GDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTT---RA 728 Query: 1454 SLLTGGEFNDTLTGYDTDDILEGLVGNDTLSGGLGNDTLRGGAGRDTLYGDDGADTLLGG 1513 G +F D G D DD++EG GND L G GNDTL GG G D LYG DG D L+G Sbjct: 729 DKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGV 788 Query: 1514 ADNDSLAGGNGDD------------VLDGGTGNDT------------------LEGGKGS 1543 A N+ L GG+GDD VL GG GND L+GG G+ Sbjct: 789 AGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGN 848 Query: 1544 DTYIFAKGAGSDAIDNSSYNDITANKLDVVRLDGLNSEDVSLRRESDDLIVQVRQTG--- 1600 D Y + G G ID+ + D + L ++ DV+ +RE +DLI+ + Sbjct: 849 DIYRYLSGYGHHIIDDDGGKE------DKLSLADIDFRDVAFKREGNDLIMYKGEGNVLS 902 Query: 1601 ----ESLRIRSHFASDSGSWS-YAIDQLKFADGTIWDRAHITAALLDGTDGN 1647 + R+ F +SG S + I+Q+ G I + AL N Sbjct: 903 IGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRNN 954 Score = 98.9 bits (246), Expect = 4e-22 Identities = 85/385 (22%), Positives = 142/385 (36%), Gaps = 76/385 (19%) Query: 2065 GGAGNDSLSGGIGNDVLDGGAGNDTLDGGKGSDTYVFGKGYGRDTISNYAYNDTTVDKLD 2124 G G+D + G+ + G G+D + K Y+ G NY + Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVK 675 Query: 2125 VIRLEGLTSEDVSIQRESDDLVIQINQTGETLRVNSHFYADQSYGYAINQLQFANGIVWD 2184 V++ E + ++VS+ + ++ + ++ + L + Sbjct: 676 VLQ-EVVKEQEVSVGKRTEKT--------QYRSYEFTHINGKNL-TETDNLYSVEEL--- 722 Query: 2185 QAQITAALLIGAESDDSITGYASDDRVSGGDGNDILSGRTGNDLLEGGRGKDTLNGEEGN 2244 IG D G D G DG+D++ G GND L G +G DTL+G G+ Sbjct: 723 ---------IGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGD 773 Query: 2245 DTLLGGAGNDTLNGGYGNDILDGGSGND------------------------------AL 2274 D L GG GND L G GN+ L+GG G+D L Sbjct: 774 DQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLL 833 Query: 2275 DGG---------FGSDTYVFRRGAGQDTISNYAYNDTTVDKLDVIHLEGLNASDILMRRE 2325 DGG +G+D Y + G G I + + D + L ++ D+ +RE Sbjct: 834 DGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKE------DKLSLADIDFRDVAFKRE 887 Query: 2326 SDDLV-------IQIKGTDETLRVTSHFS--ASVIYGYGIDQVQFADGSILTNAQIKTAL 2376 +DL+ + G + + F + I + I+Q+ G I+T +K AL Sbjct: 888 GNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKAL 947 Query: 2377 LTGTEVDESVVGYDSADRLLGLSGN 2401 +++ Y + G G+ Sbjct: 948 EYQQRNNKASYVYGNDALAYGSQGD 972 Score = 98.5 bits (245), Expect = 5e-22 Identities = 89/377 (23%), Positives = 145/377 (38%), Gaps = 60/377 (15%) Query: 2433 GGAGNDTLSGGYGNDLLDGGNGNDSLDGGYGSDTYVFRKGSGQDIISNYAYNDTTVDKLD 2492 G G+D + G+ + G G+D + Y+ G+ NY + Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVK 675 Query: 2493 VIRLEGLNASDVVMRRESDDLVIQIKDSGETLRVGSHFYPYANYGYGIDQVQFADGTVLT 2552 V++ V +R Q + T G + N + V+ GT Sbjct: 676 VLQEVVKEQEVSVGKRTEK---TQYRSYEFTHINGKNLTETDN----LYSVEELIGTTRA 728 Query: 2553 SAQIKTALLTGTEVDESVVGYDSADRLLGLSGNDILYGRQGDDVLDGGDGKDTLYGEEGN 2612 G++ + G D D + G GND LYG +G+D L GG+G D LYG +GN Sbjct: 729 D------KFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGN 782 Query: 2613 DTLLGGSGYDTLSGGYGND------------LLDGGSGNDS------------------L 2642 D L+G +G + L+GG G+D +L GG GND L Sbjct: 783 DKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLL 842 Query: 2643 DGGFGSDTYVFRKGSGQDSISNYAYNDTTVDKLDVIRLEGLNASDVVMRRESDDLVIQIK 2702 GG+G+D Y + G G I + + D + L ++ DV +RE +DL++ K Sbjct: 843 KGGYGNDIYRYLSGYGHHIIDDDGGKE------DKLSLADIDFRDVAFKREGNDLIM-YK 895 Query: 2703 DSGETLRVGS----------HFYANATYGYGIDQVQFADGSVLTNAQIRTALLTGTEGDE 2752 G L +G + + I+Q+ G ++T ++ AL ++ Sbjct: 896 GEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNK 955 Query: 2753 SISGYDSADNLLGLSGN 2769 + Y + G G+ Sbjct: 956 ASYVYGNDALAYGSQGD 972 Score = 97.3 bits (242), Expect = 1e-21 Identities = 96/414 (23%), Positives = 147/414 (35%), Gaps = 70/414 (16%) Query: 3503 ILNGGAGNDLLDGGAGNDRLDGGAGDDTYLFGKG-SGQDTIYYANETRAGKVDTIQLVGL 3561 + G G+D + AG+ + G G D + K +G TI T AG Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAG---------- 662 Query: 3562 GAADISVSRDGSDLVIRVNGTTDSLRVVYHFAGDATSGYQIDRIQFADGSAWDQEAIKS- 3620 + +V+R V + V + T + + + + + S Sbjct: 663 ---NYTVTRVLGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSV 719 Query: 3621 QVLQGSDADQYLAGYATDDLIDGGAGDDTIVGGAGNDKLAGGAGADTLSGDEGNDLLQGG 3680 + L G+ G D+ G GDD I G GND+L G G DTLSG G+D L GG Sbjct: 720 EELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGG 779 Query: 3681 SGNDTLTGGAGDDVLDGAAGNDRLD----------------------------------- 3705 GND L G AG++ L+G G+D Sbjct: 780 DGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGD 839 Query: 3706 ----GGAGDDTYLFGKGSGQDTLYYVNEARAGKVDTIQLVGLGVSDVSVSRDGYDLV--- 3758 GG G+D Y + G G + GK D + L + DV+ R+G DL+ Sbjct: 840 DLLKGGYGNDIYRYLSGYGHHIID----DDGGKEDKLSLADIDFRDVAFKREGNDLIMYK 895 Query: 3759 ----VRVNGTTDTLRVMYHFMGDATSG--YQIDRIQFADGNIWGQDTIKIQALLGNDADQ 3812 V G + + F ++ ++I++I G I D++K L Sbjct: 896 GEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLK--KALEYQQRN 953 Query: 3813 YLAGYATDDLIDAGGGDDTINGAAGN-DTLIGGSGADTLSGEEGNDLLQGGAGN 3865 A Y + A G +N +I +G+ + E L +GN Sbjct: 954 NKASYVYGNDALAYGSQGDLNPLINEISKIISAAGSFDVKEERTAASLLQLSGN 1007 Score = 95.4 bits (237), Expect = 5e-21 Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 45/232 (19%) Query: 1078 LTGYASDDRIVGGMGDDVLSGLAGNDVVNGDEGSDTLYGGTGQDTLSGGSGSDYLYGEEG 1137 L G D+ G D+ G G+D++ G++G+D LYG G DTLSGG+G D LYG +G Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDG 781 Query: 1138 NDLLAGNAGSDILYGADGND------------ILDGGTGNDT------------------ 1167 ND L G AG++ L G DG+D +L GG GND Sbjct: 782 NDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDL 841 Query: 1168 LDGGRGSDIYRFAKGYGQDSINNNSYGETATDKVDAIQLDGLNSADLRFYRSSDDLV--- 1224 L GG G+DIYR+ GYG I+++ E D + L ++ D+ F R +DL+ Sbjct: 842 LKGGYGNDIYRYLSGYGHHIIDDDGGKE------DKLSLADIDFRDVAFKREGNDLIMYK 895 Query: 1225 ----IQIKATGDTLTVRSHFSQDGVTA--YAVDQLRFADGSVWGGAQIKAAV 1270 + + +T R+ F ++ + ++Q+ G + +K A+ Sbjct: 896 GEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKAL 947 Score = 95.0 bits (236), Expect = 6e-21 Identities = 95/431 (22%), Positives = 159/431 (36%), Gaps = 91/431 (21%) Query: 4222 VLNGGDGKDSLYGGNGNDQLDGGAGNDMLDGGNGDDTYLFGKGSGQDSIYYAYEGRADKL 4281 + GDG D ++ G+ + G G+D++ D YL G+ Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATE------------ 660 Query: 4282 DTVKLIDLNAADVSVRRDGNDLLIRVLGTTDSLRVVAHFTNDATYGYQVDRIQFADGNSW 4341 A + +V R + G L+ V + + G + ++ Q+ Sbjct: 661 ---------AGNYTVTRV-------LGGDVKVLQEVVK-EQEVSVGKRTEKTQYRSYEFT 703 Query: 4342 NQASIKSAV---------LQGTDADETLAGTAISDSIDAGAGDDTVNGGSGDDTLSGSKG 4392 + L GT + G+ +D GDD + G G+D L G KG Sbjct: 704 HINGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKG 763 Query: 4393 ADTLNGEAGDDLLLGGMGNDTLNGGLGNDILDGGAGNDR------------LDGGDGDDT 4440 DTL+G GDD L GG GND L G GN+ L+GG G+D L GG G+D Sbjct: 764 NDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDK 823 Query: 4441 ---------------------------YLFARGAGQDTVYYAYESRIGKLDTVKLTELNA 4473 Y + G G + GK D + L +++ Sbjct: 824 LYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIID----DDGGKEDKLSLADIDF 879 Query: 4474 VDVSVRRDGSDLL-------ILVLGSTDSLRVMSHFTNDAT--YGYQIDRIQFADGSFWD 4524 DV+ +R+G+DL+ +L +G + + + F ++ ++I++I G Sbjct: 880 RDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIIT 939 Query: 4525 QSAIKNQVLQGSDADETLSGTGGNDVIDAGAGDDVINGAAGNDTLTGNAGADTLNGGEGN 4584 ++K + + + S GND + G+ D+ + AG+ + Sbjct: 940 PDSLKKAL-EYQQRNNKASYVYGNDALAYGSQGDLNPLINEISKIISAAGSFDVKEERTA 998 Query: 4585 DVLLGGAGNDS 4595 LL +GN S Sbjct: 999 ASLLQLSGNAS 1009 Score = 94.3 bits (234), Expect = 1e-20 Identities = 81/366 (22%), Positives = 136/366 (37%), Gaps = 90/366 (24%) Query: 4042 NGGAGNDSLAGGSGNDVLDGGAGNDRLDGGAGDDTYLFGKGSGQDTIYYANESRAGKVDQ 4101 + G G+D + +G+ + G G+D + D YL TI + AG Sbjct: 615 HLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYL--------TIDGTKATEAGNYTV 666 Query: 4102 VKLVDLNAADVSVARDGYDLVIRILGTTDTLRVVYHFMGDATAGYQIDRIAFADGGFWDQ 4161 +++ DV V ++ + + G + ++ + F Sbjct: 667 TRVLG---GDVKVLQEV-------VKEQEVSV-----------GKRTEKTQYRSYEFTHI 705 Query: 4162 TAIKAQVLQGTEADETLSGTGSDDVIYAAAGDDSVNGGSGNDTLSGGSGADTLNGEDGND 4221 + E L GT D + + D +G G+D + G G D L G+ GND Sbjct: 706 NGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGND 765 Query: 4222 VLNGGDGKDSLYGGNGNDQLDGGAGNDMLDGGNGDD------------------------ 4257 L+GG+G D LYGG+GND+L G AGN+ L+GG+GDD Sbjct: 766 TLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLY 825 Query: 4258 ------------------------TYLFGKGSGQDSIYYAYEGRADKLDTVKLIDLNAAD 4293 Y + G G I K D + L D++ D Sbjct: 826 GSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIID----DDGGKEDKLSLADIDFRD 881 Query: 4294 VSVRRDGNDLL-------IRVLGTTDSLRVVAHFTNDAT--YGYQVDRIQFADGNSWNQA 4344 V+ +R+GNDL+ + +G + + F ++ +++++I G Sbjct: 882 VAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPD 941 Query: 4345 SIKSAV 4350 S+K A+ Sbjct: 942 SLKKAL 947 Score = 91.6 bits (227), Expect = 7e-20 Identities = 90/379 (23%), Positives = 138/379 (36%), Gaps = 84/379 (22%) Query: 3128 GDDILEGGAGNDRLDGGYGNDTYVFGKGSGQDTVLAYDPVSTRVDVVKLTGLNSSDVVIT 3187 GDD + AG+ + G G+D + K D +D K T + V T Sbjct: 619 GDDKVFLSAGSANIYAGKGHDVVYYDKT---------DTGYLTIDGTKATEAGNYTV--T 667 Query: 3188 RESSDLLIRVKGATDTLR--VSNHFINDSTYGYQINHIQFADGDVLSLAAINALVLQSSN 3245 R + G L+ V + + G + Q+ + + N + Sbjct: 668 RV-------LGGDVKVLQEVVKEQ---EVSVGKRTEKTQYRSYEFTHINGKNLTETDNLY 717 Query: 3246 ADETLTGFASDDVIDGSGGDDTLNGAAGNDSLSGGTGSDTLNGEDGNDLLQGGSGNDVLN 3305 + E L G D GS D +GA G+D + G G+D L G+ GND L GG+G+D L Sbjct: 718 SVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLY 777 Query: 3306 GGAGNDVLDGGAGNDRLDGGAGDD------------------------------------ 3329 GG GND L G AGN+ L+GG GDD Sbjct: 778 GGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGE 837 Query: 3330 ------------IYLFGKGSGQDVIYYANEARTGKVDTIQLVGLNAGDISISRAGYDLVL 3377 IY + G G +I GK D + L ++ D++ R G DL++ Sbjct: 838 GDDLLKGGYGNDIYRYLSGYGHHIID----DDGGKEDKLSLADIDFRDVAFKREGNDLIM 893 Query: 3378 -------RVNGTTDSLRVVYHFLSDATSG--YQIDRIQFADGNIWGQETIKSLALQGTDA 3428 G + + F ++ ++I++I G I +++K Sbjct: 894 YKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRN 953 Query: 3429 DQYLEGYGTDDLIEAGAGD 3447 ++ YG D L GD Sbjct: 954 NKASYVYGNDALAYGSQGD 972 Score = 85.8 bits (212), Expect = 4e-18 Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 1/139 (0%) Query: 2384 ESVVGYDSADRLLGLSGNDILYGRQGDDFLDGGDGKDTLYGEDGNDTLQGGAGNDTLSGG 2443 E ++G AD+ G DI +G GDD ++G DG D LYG+ GNDTL GG G+D L GG Sbjct: 720 EELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGG 779 Query: 2444 YGNDLLDGGNGNDSLDGGYGSDTY-VFRKGSGQDIISNYAYNDTTVDKLDVIRLEGLNAS 2502 GND L G GN+ L+GG G D + V ++++ ND L+G Sbjct: 780 DGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGD 839 Query: 2503 DVVMRRESDDLVIQIKDSG 2521 D++ +D+ + G Sbjct: 840 DLLKGGYGNDIYRYLSGYG 858 Score = 78.9 bits (194), Expect = 5e-16 Identities = 104/485 (21%), Positives = 160/485 (32%), Gaps = 139/485 (28%) Query: 2792 GGDGNDTLDGGAGNDSLDGGYGSDTYVFRKGSGQDTINNYSYNDTTVGKLDVIRLEGLNA 2851 GDG+D + AG+ ++ G G D Y+ T G L + +G A Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVV--------------YYDKTDTGYLTI---DGTKA 658 Query: 2852 SDVAMRRESDDLIIQIKDSGETLRVSSHFYPYANYGYGIDQVQFADGSVLTNAQIRSAML 2911 ++ + L +K E V + + G Q RS Sbjct: 659 TEAGNYTVTRVLGGDVKVLQEV--VKEQ--------------EVSVGKRTEKTQYRSYEF 702 Query: 2912 SGSEGD--DTVSGYDSADSLFGQSGNDVLSGRQGDDILDGGDGKDTLYGEDGDDTLLGGT 2969 + G S + L G + D G + DI G DG D + G DG+D L G Sbjct: 703 THINGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGD- 761 Query: 2970 SSDTLSGGYGNDLLDGGSGNDSLDGGFGSDTYVFRKGSGQDTISNYAYNDTTVGKLDVIR 3029 GND+L GG +G D + ND +G Sbjct: 762 -----------------KGNDTLSGG-----------NGDDQLYGGDGNDKLIGVAGNNY 793 Query: 3030 LEGLNVSDVVIRRESDDLVIQIKDSDETLRVSSHFYASAIYGYGIDQIQFADGVVWNKDD 3089 L G G G D+ Q + Sbjct: 794 LNG--------------------------------------GDGDDEFQVQGNSLAK--- 812 Query: 3090 LNANLSTVVPVSSLTITGTEANETLTGGAGHDTLYGNGGDDILEGGAGNDRLDGGYGNDT 3149 L GG G+D LYG+ G D+L+GG G+D L GGYGND Sbjct: 813 ----------------------NVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDI 850 Query: 3150 YVFGKGSGQDTVLAYDPVSTRVDVVKLTGLNSSDVVITRESSDLL-------IRVKGATD 3202 Y + G G + D + D + L ++ DV RE +DL+ + G + Sbjct: 851 YRYLSGYGHHII---DDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKN 907 Query: 3203 TLRVSNHFINDST--YGYQINHIQFADGDVLSLAAINALVLQSSNADETLTGFASDDVID 3260 + N F +S ++I I G +++ ++ + ++ + +D + Sbjct: 908 GITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNKASYVYGNDALAY 967 Query: 3261 GSGGD 3265 GS GD Sbjct: 968 GSQGD 972 Score = 76.9 bits (189), Expect = 2e-15 Identities = 51/154 (33%), Positives = 70/154 (45%), Gaps = 12/154 (7%) Query: 1834 IIGYATADELAGLEGDDVLNGRAGDDLLSGGEGRDTLNGEDGADTLLGGLGNDTLNGGAG 1893 +IG AD+ G + D+ +G GDDL+ G +G D L G+ G DTL GG G+D L GG G Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDG 781 Query: 1894 NDTLDGGAGNDSLEGGKGSDTY----------IYRKGSGQDTISNYSYNDLTAHKLDVVR 1943 ND L G AGN+ L GG G D + + G G D + DL Sbjct: 782 NDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDL 841 Query: 1944 LEGLNTSDVSIRRESDDLLIQIRQTG--ETLRIS 1975 L+G +D+ I G + L ++ Sbjct: 842 LKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLA 875 Score = 71.9 bits (176), Expect = 7e-14 Identities = 64/194 (32%), Positives = 91/194 (46%), Gaps = 18/194 (9%) Query: 519 QVGGGDGDFGLLIGLAGLSSNIGTSGAD--SLYSNSSSGSYLMGFGGGDSLYGGGGSDSL 576 Q+ GGDG+ LIG+AG + G G D + NS + + L G G D LYG G+D L Sbjct: 775 QLYGGDGN-DKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLL 833 Query: 577 DGGSGNDYLNAGESSDIYRFSRGWGQDSINNYDVSSDKTDTIEFAADILPTDITVARSGY 636 DGG G+D L G +DIYR+ G+G I D K D + ADI D+ R G Sbjct: 834 DGGEGDDLLKGGYGNDIYRYLSGYGHHII---DDDGGKEDKLSL-ADIDFRDVAFKREGN 889 Query: 637 DLVL-------LLKSSTDKITVSNYFQNDG--ITPYALENIHFADGTTWTLNQLKTMALI 687 DL++ L + IT N+F+ + I+ + +E I G T + LK + Sbjct: 890 DLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKK--AL 947 Query: 688 TTEGNDNVWGYATD 701 + +N Y Sbjct: 948 EYQQRNNKASYVYG 961 Score = 71.2 bits (174), Expect = 1e-13 Identities = 65/256 (25%), Positives = 99/256 (38%), Gaps = 14/256 (5%) Query: 2617 GGSGYDTLSGGYGNDLLDGGSGNDSLDGGFGSDTYVFRKGSGQDSISNYAYNDTTVDKLD 2676 G G D + G+ + G G+D + Y+ G+ NY + Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVK 675 Query: 2677 VIRLEGLNASDVVMRRESDDLVIQIKDSGETLRVGSHFYANATYGYGIDQVQFADGSVLT 2736 V++ V +R Q + T G + + V+ G+ Sbjct: 676 VLQEVVKEQEVSVGKRTEK---TQYRSYEFTHINGKNLTETDN----LYSVEELIGTT-- 726 Query: 2737 NAQIRTALLTGTEGDESISGYDSADNLLGLSGNDLLYGLQGDDTLKGGDGRDTLSGGDGN 2796 R G++ + G D D + G GND LYG +G+DTL GG+G D L GGDGN Sbjct: 727 ----RADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGN 782 Query: 2797 DTLDGGAGNDSLDGGYGSDTY-VFRKGSGQDTINNYSYNDTTVGKLDVIRLEGLNASDVA 2855 D L G AGN+ L+GG G D + V ++ + ND G L+G D+ Sbjct: 783 DKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLL 842 Query: 2856 MRRESDDLIIQIKDSG 2871 +D+ + G Sbjct: 843 KGGYGNDIYRYLSGYG 858 Score = 40.7 bits (95), Expect = 2e-04 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Query: 557 YLMGFGGGDSLYGGGGSDSLDGGSGNDYLNAGESSDIYRFSRGWGQDSINNYDVSSDKTD 616 + G G D LYG G+D+L GG+G+D L G+ +D G NNY D D Sbjct: 748 LIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAG------NNYLNGGDGDD 801 Query: 617 TIEFAADILPTDITVARSGYDLVL 640 + + L ++ G D + Sbjct: 802 EFQVQGNSLAKNVLFGGKGNDKLY 825
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 345 bits (887), Expect = e-122 Identities = 159/283 (56%), Positives = 198/283 (69%), Gaps = 1/283 (0%) Query: 3 LLDLLASSPLAFVITCCILGLIIGSFLNVVVYRLPKMMERDWKAQSREMLGLPAE-PDQP 61 LL+L P + + L+IGSFLNVV++RLP M+ER+W+A+ R E D+P Sbjct: 4 LLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEP 63 Query: 62 AFNLNRPRSSCPRCAHKIRPWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAVLSAY 121 +NL PRS CP C H I EN+P++S+L LRG+C C+APIS RYPLVEL A+LS Sbjct: 64 PYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVA 123 Query: 122 IAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLND 181 +A GW A L+L+W L+A++ ID D LLPD L LPLLW GL+ N G F SL D Sbjct: 124 VAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGD 183 Query: 182 ALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVGA 241 A+ GA+AGYL LWS++W FKL+TGKEGMGYGDFKLLA LGAW GWQ LP+ +LLSSLVGA Sbjct: 184 AVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGA 243 Query: 242 VLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYM 284 +G+ ++ +R PIPFGPYLAIAGWIALLWG IT Y+ Sbjct: 244 FMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYL 286
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 434 bits (1117), Expect = e-153 Identities = 119/404 (29%), Positives = 219/404 (54%), Gaps = 10/404 (2%) Query: 11 YTWEGVDKKGGKLSGEVSGHNLALVKAQLRKQGINFTKVRKKPVSI---------FGKGK 61 Y ++ +D +G K G + + LR++G+ V + + Sbjct: 4 YHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKI 63 Query: 62 KIKPLDIAFFSRQMATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATA 121 ++ D+A +RQ+AT++ A +PL ++ D +A+ +E P++ L+ +++ +V G+S A A Sbjct: 64 RLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADA 123 Query: 122 LRQKPEYFDDLFCNLVDAGEQAGALESLLDRIASYKEKTEKLKAKIKKAMTYPIAVLIVA 181 ++ P F+ L+C +V AGE +G L+++L+R+A Y E+ ++++++I++AM YP + +VA Sbjct: 124 MKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVA 183 Query: 182 IIVSGILLIKVVPQFQSVFAGFGAELPAFTLMVIGLSDIVQKWWLAIVGLFFVGAFLFKR 241 I V ILL VVP+ F LP T +++G+SD V+ + ++ G F+ Sbjct: 184 IAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRV 243 Query: 242 AYKQSEKFRDNIDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATG 301 +Q EK R + R LL +P+IG + + ARYARTL+ A+ VPL++A+ Sbjct: 244 MLRQ-EKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMS 302 Query: 302 NVVFRDAVNKVKQDVSTGMQLNFSMRSTGVFPSLAIQMTAIGEESGALDNMLDKVATYYE 361 N R ++ V G+ L+ ++ T +FP + M A GE SG LD+ML++ A + Sbjct: 303 NDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQD 362 Query: 362 DEVDNMVDNLTSLMEPMIMAVLGVIVGGLVIAMYLPIFKLGNVV 405 E + + L EP+++ + +V +V+A+ PI +L ++ Sbjct: 363 REFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 33.2 bits (75), Expect = 0.002 Identities = 14/30 (46%), Positives = 16/30 (53%) Query: 168 APQDQPAPAPAPAPAPAPAPAPAPAPASAP 197 AP QP P +PA PA PAP P + P Sbjct: 322 APNAQPLPEVSPAENPANNPAPNENPGTRP 351 Score = 29.7 bits (66), Expect = 0.025 Identities = 12/32 (37%), Positives = 15/32 (46%) Query: 168 APQDQPAPAPAPAPAPAPAPAPAPAPASAPKS 199 +P + PA PAP P P P P P P + Sbjct: 332 SPAENPANNPAPNENPGTRPNPEPDPDLNPDA 363
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 30.2 bits (68), Expect = 0.005 Identities = 15/35 (42%), Positives = 26/35 (74%), Gaps = 4/35 (11%) Query: 314 TSLLVVVVVLIIGIVASLLFP----GKEESAEEKA 344 T L ++VV++IIG++ASL+ P KE++ ++KA Sbjct: 11 TLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKA 45
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 607 bits (1566), Expect = 0.0 Identities = 224/563 (39%), Positives = 345/563 (61%), Gaps = 13/563 (2%) Query: 404 LQAVPASPGIAIGPAHVQVLQIFD-YPQQGESVAAERERLHKAIGEVRSDIENLIQRSK- 461 + + AS G+AI A + + D V+ E E+L A+ + + ++ + +++ Sbjct: 5 ITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEA 64 Query: 462 --SKAIREIFITHQEMLEDPELTNEVEARLNNDE-SAAAAWATVIETAAVQQEQLQDALL 518 EIF H +L+DPEL + ++ ++ N++ +A A V + E + + + Sbjct: 65 SMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEYM 124 Query: 519 AERAADLRDVGRRVLAQICGVET--VAAPDEPYILVMDEVGPSDVARLDPAQVAGILTAR 576 ERAAD+RDV +RVL + GVET +A E +++ +++ PSD A+L+ V G T Sbjct: 125 KERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDI 184 Query: 577 GGATAHSAIVARALGIPALVGAGDEVLLLKPGTVLLLDSQRGRLTVAPDEATLQRAAQDR 636 GG T+HSAI++R+L IPA+VG + ++ G ++++D G + V P E ++ + R Sbjct: 185 GGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKR 244 Query: 637 DAREERLKAAAAARMEPAVMRDGHAVEVFANIGDSTGTPAAVEQGAEGVGLLRTELLFMA 696 A E++ + A EP+ +DG VE+ ANIG + G EG+GL RTE L+M Sbjct: 245 AAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMD 304 Query: 697 HSQAPDEATQEAEYRRVLTDLGGRPLVVRTLDVGGDKPLPYWPIAKEENPFLGVRGIRLT 756 Q P E Q Y+ V+ + G+P+V+RTLD+GGDK L Y + KE NPFLG R IRL Sbjct: 305 RDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAIRLC 364 Query: 757 LQRPDVMESQLRALLRAADSGPLRIMFPMIGTLEEWRQAREMTERLREE-----IPVSD- 810 L++ D+ +QLRALLRA+ G L++MFPMI TLEE RQA+ + + +++ + VSD Sbjct: 365 LEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDS 424 Query: 811 LQLGIMIEVPSAALIAPVLAKEVDFFSIGTNDLTQYTMAIDRGHPTLSAQADGLHPSVLQ 870 +++GIM+E+PS A+ A + AKEVDFFSIGTNDL QYTMA DR + +S HP++L+ Sbjct: 425 IEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAILR 484 Query: 871 LIDMTVRAAHANGKWVGVCGELAADPLAVPILVGLGVDELSVSARSIGEVKACVRELTLS 930 L+DM ++AAH+ GKWVG+CGE+A D +A+P+L+GLG+DE S+SA SI ++ + +L+ Sbjct: 485 LVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKE 544 Query: 931 SAQQLAQNALTAGSAAEVRALVE 953 + AQ AL +A EV LV+ Sbjct: 545 ELKPFAQKALMLDTAEEVEQLVK 567
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 34.3 bits (78), Expect = 0.002 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 29/279 (10%) Query: 441 DAWVKSLETIL-DGFKGDQFAVPGLTINLSSIEPPALQALADRAALRDQKERLEKELKQL 499 DA + L+ I+ + + + P T L+ A+QA +R L +E+ KE + Sbjct: 88 DALTQRLKDIVNEALRHNASRTPSAT-ELAHANNAAMQAEDERLRLAKAEEKARKEAE-- 144 Query: 500 KTQQAVAADRSASKTQTESLYQQVLDAQKALEDFRRCQTLSAEESGKLEELAQMEAAQDE 559 E +Q +A++ ++ R + + + E + AA E Sbjct: 145 ---------------AAEKAFQ---EAEQRRKEIEREKAETERQLKLAEAEEKRLAALSE 186 Query: 560 LKRSSDAFTERVQQLSAKLQL-IARQIGDMESKQRTLDDALHRRQLLPADLPFGTPFMDP 618 ++ + Q+ + Q + + G++++ L ++H R L + Sbjct: 187 EAKAVEI----AQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQ 242 Query: 619 IDDSMDNLLPLLNDYQDSWQGLLRSDGQIEALYAQVRLKGVAKFDSEDDM--ERRLQLLI 676 L L+ L++ EA +V + + + E R+ + Sbjct: 243 ASAKYKELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRIN 302 Query: 677 NAYAHRTDEALTLGKARRAAVTDIARTLRNIRSDYDSLE 715 + R A + + N++ ++L Sbjct: 303 ADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNNLL 341
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 31.5 bits (71), Expect = 0.002 Identities = 14/81 (17%), Positives = 22/81 (27%) Query: 29 APSRPELLAPLPPPVEVQNIAPAAAPSAHAAPVEAANVVPITRQPERPKVEVPRPSLAST 88 AP++P + + P A P P +P + +E P+P Sbjct: 45 APAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK 104 Query: 89 RTVAPVEEAAPAPPKAAVVPP 109 E K P Sbjct: 105 PKPVKKVEQPKRDVKPVESRP 125
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.4 bits (89), Expect = 3e-06 Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 64 DEAHLLNITVKPENQGRGLGLLLLDHLMKRAYQLNARECFLELRDSNRPAYRLYENYGF 122 A + +I V + + +G+G LL ++ A + + LE +D N A Y + F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.6 bits (178), Expect = 2e-15 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 1/109 (0%) Query: 567 QGQVILLVEDDDSVRLINQEVLEELGYRVHVARDGEEALRVFNDLEKIDFLLTDVGLPGM 626 G IL+ +DD ++R + + L GY V + + R D ++TDV +P Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDE 60 Query: 627 NGRQLAEILQQLSPRLPVLFLTGYAEGALTRADFLGPYMQLLTKPFTLE 675 N L +++ P LPVL ++ L KPF L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 29.3 bits (65), Expect = 0.030 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 165 EEKLREQAEQAQSTQQPKKPTASEIRREQEEAEGSQSLREIYRKLASALHPDREQDADER 224 EEK R++AE A+ Q + EI RE+ E E L E K +AL + + + Sbjct: 136 EEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAAL-SEEAKAVEIA 194 Query: 225 ERKTALMQ 232 ++K + Q Sbjct: 195 QKKLSAAQ 202
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 103 bits (258), Expect = 1e-27 Identities = 66/316 (20%), Positives = 113/316 (35%), Gaps = 51/316 (16%) Query: 7 RALITGINGFTGRFMANELAAQGCEVLGV----------------GSQPSDSPSYYQVDL 50 + L+TG GF G ++ L G +V+G+ ++++DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 51 ADVAGLRKLLADTQPDIVVHLAALAFVGHGAAD--AFYQVNLIGTRNLLEAIDACGKVPD 108 AD G+ L A + V V + + A+ NL G N+LE Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK--IQ 119 Query: 109 CVLLASSANVYG-NASSGMLDETTQPAPANDYAVSKLAMEYMASLWHA--KLPIVIARPF 165 +L ASS++VYG N + + P + YA +K A E MA + LP R F Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 166 NYTGVGQAENFLLPKIVSHFTRK---ASTIEL-GNLDVWRDFSDVRAVVSAYRGLLEARP 221 G + L K FT+ +I++ + RDF+ + + A L + P Sbjct: 180 TVYGPWGRPDMALFK----FTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIP 235 Query: 222 LGQT------------------INVSSGVTYSLREVIDMCREITGQDIDVQVNPAFVRAN 263 T N+ + L + I + G + + P ++ Sbjct: 236 HADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLP--LQPG 293 Query: 264 EVKTLCGNNARLRALV 279 +V + L ++ Sbjct: 294 DVLETSADTKALYEVI 309
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 111 bits (279), Expect = 3e-30 Identities = 75/350 (21%), Positives = 129/350 (36%), Gaps = 57/350 (16%) Query: 1 MKAIITGITGQDGAYLAELLLEKGYTVYG-----TYRRTSSVNFWRIEELGIQNNPNLHL 55 MK ++TG G G ++++ LLE G+ V G Y S + R+E L P Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVS-LKQARLELLA---QPGFQF 56 Query: 56 VEYDLTDLSASIRLLQTTGATEVYNLAAQSFVGVSFEQPLTTAEITGIGAVNLLEAIRIV 115 + DL D L + V+ + V S E P A+ G +N+LE R Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 116 NTKIRFYQASTSEMFGKVQAIPQVESTPF-YPRSPYGVAKLYAHWMTINYRESYGIFATS 174 + AS+S ++G + +P +P S Y K M Y YG+ AT Sbjct: 117 KIQ-HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATG 175 Query: 175 GILFNHESPLRGR-EFVTRKITDSVAKIKLGLIESFELGNMDAKRDWGFAKEYVEGMWRM 233 F P GR + K T ++ + K I+ + G M KRD+ + + E + R+ Sbjct: 176 LRFFTVYGP-WGRPDMALFKFTKAMLEGK--SIDVYNYGKM--KRDFTYIDDIAEAIIRL 230 Query: 234 LQADEPDT-------------------FVLATNRTETVRDFVSMAFKATGVTIKWEGEAE 274 + + + + D++ A G+ K Sbjct: 231 QDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK------ 284 Query: 275 SEKGICADTGKVLVSVNPKFYRPTEVELLIGNPAKAKEVLGWEPKTNLEE 324 K ++ + +P +V + EV+G+ P+T +++ Sbjct: 285 ----------KNMLPL-----QPGDVLETSADTKALYEVIGFTPETTVKD 319
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 104 bits (262), Expect = 1e-27 Identities = 65/342 (19%), Positives = 123/342 (35%), Gaps = 30/342 (8%) Query: 15 KVLVTGHTGFTGGWACLWLNSIGAQVAGY-SLAPETKPSLFE---EIGLEDDVTSVLGDI 70 K LVTG GF G L G QV G +L SL + E+ + D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 71 CDFDKLLQAVEAFQPDLILHLAAQPLVRRSYREPVQTFMVNAQGTAHVLEAARLVKSVRG 130 D + + + + + + VR S P N G ++LE R ++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR-HNKIQH 120 Query: 131 VLCVTTDKVYKNNEWAWPYRENDPLGGK-DPYSASKAAAEMIIQSYGASYPFSQ-GLGPA 188 +L ++ VY N P+ +D + Y+A+K A E++ +Y Y GL Sbjct: 121 LLYASSSSVYGLNR-KMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL--- 176 Query: 189 IATARGGNIIGGGDWSE-DRLIPDFVRAVNEGQVMTL-RYPDATRPWQHVLALVHGYLVI 246 R + G W D + F +A+ EG+ + + Y R + ++ + + + Sbjct: 177 ----RFFTVY--GPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230 Query: 247 LAGLLSENP----GRVAKAWNLGPQEL------KQYSVRDVLELMSADWQRP-NLEFMDN 295 + + A ++ P + + D ++ + + Sbjct: 231 QDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPL 290 Query: 296 PLPEAGALALDSSIARNQLNWIPVWNTEEVVEKTASWYRDFY 337 + + D+ + + P ++ V+ +WYRDFY Sbjct: 291 QPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFY 332
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.5 bits (66), Expect = 0.022 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 9/99 (9%) Query: 210 KFNISRLLQLGLT--------AVFNHSTVPLRMASFLGLIILAVSVLGALYYVLLRLFHP 261 + I RLL G+ HS L + + A + + V+ R Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 262 ELPPG-LASIHILVLFGIGLNSFLLGIIGEYLLRIYLVL 299 E I +V G G+ + G+I Y+ YL+L Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLL 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.3 bits (76), Expect = 2e-04 Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 5 EQSVEIKVLARQGHGIKFIARELGISRNTVRKYLRK 40 E + + L A LG++RNT+RK +R+ Sbjct: 437 EYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 39.8 bits (93), Expect = 8e-06 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 30/163 (18%) Query: 1 MKILLLGKNGQVGWELQRSLAALG-EVIALD----------------RQGADGLC---GD 40 MK L+ G G +G+ + + L G +V+ +D G D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 41 LADLEGLTATIRKLAPDVIVNAAAYTAVDKAESEPDLAVLINSEAPGVL-----AREAAA 95 LAD EG+T + + + AV + P +S G L R Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPH--AYADSNLTGFLNILEGCRHNKI 118 Query: 96 LGAWLIHYSTDYVFDGSGDSQWQENAPTG-PLSVYGRSKLMGE 137 L++ S+ V+ + + + P+S+Y +K E Sbjct: 119 --QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE 159
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 184 bits (470), Expect = 1e-57 Identities = 92/362 (25%), Positives = 145/362 (40%), Gaps = 55/362 (15%) Query: 2 ILVTGGAGFIGSNFVRQWCARNDEPVLNLDALT--YAGNL--ANLQSLEGNDQHRFVHGN 57 LVTG AGFIG + ++ + V+ +D L Y +L A L+ L +F + Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQ-VVGIDNLNDYYDVSLKQARLELL-AQPGFQFHKID 60 Query: 58 IGDAELLTRLFAEHRPRAVVHFAAESHVDRSITGPEAFVETNVMGTFRLLEAARAYWNGL 117 + D E +T LFA V V S+ P A+ ++N+ G +LE R N + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH--NKI 118 Query: 118 EATDKTAFRFLHVSTDEVYGTLGANDPAFTETTPYLPNSPYSASKAASDHLVRSYHHTYG 177 + L+ S+ VYG L P T+ + P S Y+A+K A++ + +Y H YG Sbjct: 119 Q-------HLLYASSSSVYG-LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 178 MPVLTTNCSNNYGPFHFPEKLIPLMIVNALAGKALPVYGDGQQIRDWLYVEDHCSGIRRV 237 +P YGP+ P+ + L GK++ VY G+ RD+ Y++D I R+ Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230 Query: 238 LEAG------------------ALGETYNIGGWNEKANIDIVHTLCALLDELTPAAARQV 279 + A YNIG + +D + L L Sbjct: 231 QDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI--------- 281 Query: 280 INQKTGELVSNYAELITYVTDRPGHDRRYAIDARKIERELGWTPAETFDTGIRKTVEWYL 339 E N L +PG + D + + +G+TP T G++ V WY Sbjct: 282 ------EAKKNMLPL------QPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYR 329 Query: 340 AN 341 Sbjct: 330 DF 331
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 43.8 bits (103), Expect = 1e-06 Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 19/157 (12%) Query: 87 LTTGSGDDVIIVNGDQNNYIDAGAGNDTIITGNGNNTVIAGAGNNNNNNNNNNNNNNNNN 146 L G+D + G+ ++ + G GND +I GNN + G G++ N+ N Sbjct: 758 LYGDKGND-TLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLF 816 Query: 147 NNNNNNN---------------NNNIITGSGNDTIV-LSGTNHADVVNAGAGFDVVQL-D 189 N+ ++ + G GND LSG H + + G D + L D Sbjct: 817 GGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLAD 876 Query: 190 GSVADYSFS-TGNNFNVNLTGAQAASITGAEFLTFVN 225 D +F GN+ + SI +TF N Sbjct: 877 IDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRN 913 Score = 41.1 bits (96), Expect = 8e-06 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%) Query: 92 GDDVIIVNGDQNNYIDAGAGNDTIITGNGNNTVIAGAGNNNNNNNNNNNNNNNNNNNNNN 151 G+D + N+ + G G+D + G+GN+ +I AG NN N + ++ N+ Sbjct: 754 GND-RLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAG---NNYLNGGDGDDEFQVQGNS 809 Query: 152 NNNNNIITGSGNDTIVLSGTNHADVVNAGAGFDVV 186 N + G GND L G+ AD+++ G G D++ Sbjct: 810 LAKNVLFGGKGNDK--LYGSEGADLLDGGEGDDLL 842 Score = 36.9 bits (85), Expect = 2e-04 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 4/131 (3%) Query: 90 GSGDDVIIVNGDQNNYIDAGAGNDTIITGNGNNTVIAGAGNN----NNNNNNNNNNNNNN 145 GS I D ++ I+ GND + GN+T+ G G++ + N+ NN Sbjct: 733 GSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNN 792 Query: 146 NNNNNNNNNNNIITGSGNDTIVLSGTNHADVVNAGAGFDVVQLDGSVADYSFSTGNNFNV 205 N + ++ + G+ VL G D + G D++ GN+ Sbjct: 793 YLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYR 852 Query: 206 NLTGAQAASIT 216 L+G I Sbjct: 853 YLSGYGHHIID 863 Score = 30.3 bits (68), Expect = 0.020 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 4/117 (3%) Query: 90 GSGDDVIIVNGDQNNYIDAGAGNDTIITGNGNNTVIAGAGNN---NNNNNNNNNNNNNNN 146 G+ + G+D I +GN+ + GN+ N ++ + N+ Sbjct: 724 GTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGND 783 Query: 147 NNNNNNNNNNIITGSGNDTIVLSGTNHA-DVVNAGAGFDVVQLDGSVADYSFSTGNN 202 NN + G G+D + G + A +V+ G G D + G++ Sbjct: 784 KLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDD 840
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 40.3 bits (94), Expect = 6e-07 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 4/79 (5%) Query: 67 CFLAMLDETVVGVIVC---WTS-AFIKDLVVHPDVRHSGIGFALLNHLFAHLSKCGETAV 122 FL L+ +G I W A I+D+ V D R G+G ALL+ + + Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGL 126 Query: 123 DLHVMENNLKARRLYEKSG 141 L + N+ A Y K Sbjct: 127 MLETQDINISACHFYAKHH 145
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.1 bits (138), Expect = 2e-11 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 7/111 (6%) Query: 166 LSKARILVVDDSQVALQQSIITLRNLGIECHTARSAKEAIDVLLDLQGTDRQINVVVSDI 225 ++ A ILV DD L G + +A + ++VV+D+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI-----AAGDGDLVVTDV 55 Query: 226 EMSEMDGYALTRTLRDTPDFSDLYILLHTSLDSAMNSEKSQIAGANAVLTK 276 M + + + L ++ DL +L+ ++ ++ M + K+ GA L K Sbjct: 56 VMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 62.7 bits (152), Expect = 7e-14 Identities = 44/207 (21%), Positives = 75/207 (36%), Gaps = 19/207 (9%) Query: 11 FTFAPSCAAVVIIDMQRDFLEPGGFGAALGNDVVPLQAIVPSVQQLLALARDQSITVIHT 70 + P+ A ++I DMQ F++ P+ + ++++L I V++T Sbjct: 24 WVPDPNRAVLLIHDMQNYFVDA------FTAGASPVTELSANIRKLKNQCVQLGIPVVYT 77 Query: 71 RESHSADLANCPHAKLAHGSPGLRIGDSGPMGRILIRGEPGNQIIDSLTPLACEWVIDKP 130 + S + + G PGL SGP +II L P + V+ K Sbjct: 78 AQPGSQNPDDRALLTDFWG-PGLN---SGPYEE---------KIITELAPEDDDLVLTKW 124 Query: 131 GKGMFFATDLHQRLTDAGITHLIFAGVTTEVCVQTSMREASDRGYRCLLIEDATESYFPT 190 F T+L + + G LI G+ + + EA + + DA + Sbjct: 125 RYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLE 184 Query: 191 FKQATLDMITAQNAIVGRAASLADLQQ 217 Q L+ + A SL D Q Sbjct: 185 KHQMALEYAAGRCAFTVMTDSLLDQLQ 211
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 48.5 bits (115), Expect = 2e-08 Identities = 45/207 (21%), Positives = 73/207 (35%), Gaps = 29/207 (14%) Query: 39 APYPWPWNGQLHAHNT---------ALIVIDMQTDFCGVGGYVDSMGYDLSLTRAPIEPI 89 PY P + + L++ DMQ F VD+ S I Sbjct: 7 QPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYF------VDAFTAGASPVTELSANI 60 Query: 90 KALLAVMRPLGFTIIHTREGHRPDLSDLPANKRWRSQRIGAGIGDPGPCGKILVRGEPGW 149 + L LG +++T + P ++ + + PG L G Sbjct: 61 RKLKNQCVQLGIPVVYTAQ---------PGSQNPDDRALLTDFWGPG-----LNSGPYEE 106 Query: 150 EIIEELAPLPGEIIIDKPGKGSFCATDLELILRTRGINNLILTGITTDVCVHTTMREAND 209 +II ELAP ++++ K +F T+L ++R G + LI+TGI + T EA Sbjct: 107 KIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFM 166 Query: 210 RGFECVLLEDCCGATDPANHAAALSMV 236 + + D H AL Sbjct: 167 EDIKAFFVGDAVADFSLEKHQMALEYA 193
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 257 bits (659), Expect = 4e-85 Identities = 103/324 (31%), Positives = 154/324 (47%), Gaps = 45/324 (13%) Query: 23 AESISQLGIDVLLSGETGTGKDTIAQRIHTISGRKGR-LVAMNCAAIPESLAESELFGVV 81 + Q + ++++GE+GTGK+ +A+ +H R+ VA+N AAIP L ESELFG Sbjct: 153 LARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHE 212 Query: 82 SGAYTGADRSRVGYIEAAQGGTLYLDEIDSMPLSLQAKLLRVLETRALERLGSTSTIKLD 141 GA+TGA G E A+GGTL+LDEI MP+ Q +LLRVL+ +G + I+ D Sbjct: 213 KGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSD 272 Query: 142 VCVIASAQSSLDDAVEQGKFRRDLYFRLNVLTLQLPPLRTQPERILPLFKRFMAAAAKEL 201 V ++A+ L ++ QG FR DLY+RLNV+ L+LPPLR + E I L + F+ A KE Sbjct: 273 VRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE- 331 Query: 202 NVASADVCPLLQQVLLGHEWPGNIRELKAAAKR---------------------HVLGFP 240 + +++ H WPGN+REL+ +R + P Sbjct: 332 GLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSP 391 Query: 241 VLGVDPQSEEHLACG----------------------LKSQLRAIEKALIQQSLKRHRNC 278 + +S L +E LI +L R Sbjct: 392 IEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGN 451 Query: 279 IDAASLELDMPRRTLYRRIKELQI 302 A+ L + R TL ++I+EL + Sbjct: 452 QIKAADLLGLNRNTLRKKIRELGV 475
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 95.4 bits (237), Expect = 2e-24 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 6/176 (3%) Query: 9 LLFCMLLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNR 68 ++ M+L D LF+ LS+QD +VA+L +I R + V ++ Sbjct: 37 IVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYR--FANGSGAIEVPADKVHE 94 Query: 69 AVRVLNAAGLPRQSRASLGDIFKKEGVISTPLEERARYIYALSQELEATLSQIDGVIVAR 128 L GLP+ ++ +E + E+ Y AL EL T+ + V AR Sbjct: 95 LRLRLAQQGLPKGGAVGF-ELLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSAR 153 Query: 129 VHVVLPERIAPGEPVQPASAAVFIK--HSAALDPDSVRGRIQQMVASSIPGMSAQS 182 VH+ +P+ + SA+V + ALD + + +V+S++ G+ + Sbjct: 154 VHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISA-VVHLVSSAVAGLPPGN 208
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 27.8 bits (61), Expect = 0.026 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 7/138 (5%) Query: 48 LEQQKADLVHQQALASFWENANAFLAELQVQREVLQQQAMAAVEELLSESLRHLLDDTTL 107 LEQ A+ QQA ++E Q + L + + ++ E+ R ++ T Sbjct: 80 LEQGLAEAKSQQA--PIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPT 137 Query: 108 AERARALVKN----LAASQLNEAVATLSVHPDMAEPVAEWLADSRFAQYWQLKRDASLTT 163 + + AL+K L L L VHPD + V + L + W+L+ D +L Sbjct: 138 VDNS-ALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHP 196 Query: 164 ERLRLSDANGAFDIDWAT 181 ++S G D AT Sbjct: 197 GGCKVSADEGDLDASVAT 214
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 608 bits (1569), Expect = 0.0 Identities = 169/570 (29%), Positives = 265/570 (46%), Gaps = 70/570 (12%) Query: 12 LIGLTPVTWAVTPEAWKHTAYAYDARQTELTTALADFAKEFGMALDM-PSIPGTLDGRIR 70 L+ L+ +WA + W Y Y A+ L L DF + + + I + G+ Sbjct: 17 LLLLSSYSWAQELD-WLPIPYVYVAKGESLRDLLTDFGANYDATVVVSDKINDKVSGQFE 75 Query: 71 AQSPEEFLDRLGQEYHFQWFVYNDTLYVSPSSEHTSARVEVSSDAVDDLQTALTDVGLLD 130 +P++FL + Y+ W+ + LY+ +SE S + + +L+ AL G+ + Sbjct: 76 HDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQALQRSGIWE 135 Query: 131 KRFGWGVLPNEGVVLVRGPAKYVELVRDYSKKVE-----TPEKGDKQDIVVFPLKYANAS 185 RFGW + +V V GP +Y+ELV + +E EK I +FPLKYA+AS Sbjct: 136 PRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQQTQIRSEKTGALAIEIFPLKYASAS 195 Query: 186 DRTIRYRDQQLTVAGVASILQDLLDTRSRGEAINGINLLGHGGANAGLAGGDADTQSLPL 245 DRTI YRD ++ GVA+ILQ +L + + Sbjct: 196 DRTIHYRDDEVAAPGVATILQRVLSDAT-------------------------------I 224 Query: 246 DSSGIDTGALQQGLDRVLSYGSGSKKSGKSRSGGRANIRVTADVRNNAVLIYDLPSRKPM 305 +D + Q ++ S + RV AD NA+++ D P R PM Sbjct: 225 QQVTVDNQRIPQA---------ATRASAQ--------ARVEADPSLNAIIVRDSPERMPM 267 Query: 306 YEKLIKELDVSRNLIEIDAVILDIDRNELAELSSRWNFNAGSVGGGV----------NLF 355 Y++LI LD IE+ I+DI+ ++L EL W + N+ Sbjct: 268 YQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVIKTTGDQSNIA 327 Query: 356 DAGTSSTMFI-QNAGKFSSELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYITATS 414 G ++ + + ++ LE GSA V+ P++LT EN AVID S T Y+ T Sbjct: 328 SNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVKVTG 387 Query: 415 ERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIEDG-QIDISDINDTQPSVRKGNVS 473 + VA ++ IT GT L++ PR L K ++ L + IEDG Q S + P++ + V Sbjct: 388 KEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEGIPTISRTVVD 447 Query: 474 TQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTP 533 T A + SL+IGG + E + + K+PLLGDIPYIG LF+ +S + RLFI+ P Sbjct: 448 TVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGA-LFRRKSELTRRTVRLFIIEP 506 Query: 534 RLIGDQVNPARYVQNGNPHDVDDQMKRIKE 563 R+I + + A ++ GN D+ + + E Sbjct: 507 RIIDEGI--AHHLALGNGQDLRTGILTVDE 534
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 428 bits (1102), Expect = e-153 Identities = 109/346 (31%), Positives = 195/346 (56%), Gaps = 4/346 (1%) Query: 2 SEKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFK 61 EKTE+ TPK+IRDAR+KGQV +S+++ +++ +S + +GL+D + L+ + + Sbjct: 3 GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAE 62 Query: 62 GIDRSFAASVELIASEGLSVLLSFTLCSVGMAMLMRLVSSWMQIGFLFAPKALKLDINKI 121 F+ ++ + L + +A LM + S +Q GFL + +A+K DI KI Sbjct: 63 QSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKI 122 Query: 122 NPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLANSDLTTYWHALVE 181 NP AK++FS ++++ L SILK V + +++ +K L L+ L + L + Sbjct: 123 NPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQ 182 Query: 182 LFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLS 241 + R ++ + +V+++ D+A + Y + K+L+MS ++IK+EYK+ EG P +K RRQ Sbjct: 183 ILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQFH 242 Query: 242 HEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARA 301 EI ++ V+ + +++ NPTH A+ + Y+ GETPLPL+ K D + + A Sbjct: 243 QEIQSRNMR---ENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIA 299 Query: 302 KKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQLD 346 ++ G+P++Q I L R LY A V YIP ++A + + + + + Sbjct: 300 EEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 166 bits (422), Expect = 1e-52 Identities = 37/245 (15%), Positives = 94/245 (38%), Gaps = 5/245 (2%) Query: 17 LAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVLAMVPAPAISRALGSLDDNWFAIGGLMI 76 + R+L + P + + ++ + ++ AP++ + F L + Sbjct: 18 WPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS--FFALWLAV 75 Query: 77 KEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGELFQETLIM 136 ++ ++G LG + F + G ++ Q G ++PA + L + ++ Sbjct: 76 QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALL 135 Query: 137 LVILTGGLSLITQVIWDSYSVWPPTAWLPGMTAGGLDVFLEQLNQTMQHMLLYAAPFIAL 196 L + G + ++ D++ P + + + + + L+ A P I L Sbjct: 136 LFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 197 LLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLELGTGQLLTLVD-LKS 255 LL + A ++ A QL++ ++ P G++ + +P + + + L Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLAD 253 Query: 256 LLALL 260 +++ L Sbjct: 254 IISEL 258
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 77.1 bits (190), Expect = 1e-22 Identities = 30/84 (35%), Positives = 46/84 (54%) Query: 2 EALALFKQGMFLVVILTAPPLGVAVLVGVLTSLLQALMQIQDQTLPFGIKLGAVGLTLAM 61 + + + ++LV+IL+ P VA ++G+L L Q + Q+Q+QTLPFGIKL V L L + Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62 Query: 62 TGRWIGVELIQFINMAFDLIARSG 85 W G L+ + L G Sbjct: 63 LSGWYGEVLLSYGRQVIFLALAKG 86
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 240 bits (615), Expect = 3e-83 Identities = 75/218 (34%), Positives = 126/218 (57%), Gaps = 7/218 (3%) Query: 5 NPIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMF 64 N I L L +L+PF++ T F+K ++ ++ RNA+G+QQ+P NM L G+AL +MF Sbjct: 3 NDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMF 62 Query: 65 VMAPVAHEIQQRVHEHPLELGSADKLQSSLKTVIEPLQRFMTRNTDPDVVAHLLENTQRM 124 VM P+ H+ + + L + ++ + ++ + +D ++V + Sbjct: 63 VMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKR 122 Query: 125 WPKEMA-------DQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLA 177 E D+ K + +PA+ LSE+++ F+IGF +Y+PF+V+DL+VS++LLA Sbjct: 123 QYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLA 182 Query: 178 LGMQMVSPMTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 215 LGM M+SP+T+S P+KL+LFV + GW+ L L YM Sbjct: 183 LGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 46.5 bits (110), Expect = 4e-09 Identities = 19/81 (23%), Positives = 36/81 (44%) Query: 48 EEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCHGEQVVAE 107 E + P L+ L + L +TLAEL + +L + + + + ++ Sbjct: 219 ETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGN 278 Query: 108 GELVDVEGRLGLQITRLVTRS 128 GELV + LG++I ++ S Sbjct: 279 GELVQMNDTLGVEIHEWLSES 299
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 91.2 bits (226), Expect = 7e-21 Identities = 58/250 (23%), Positives = 86/250 (34%), Gaps = 26/250 (10%) Query: 441 DQLTDSYRTATTSATDLVTDFDVSQ-----DRIDLSNLGFSGLGSGKGGTLNISYNATLD 495 + T + ++ D Q + + G S + + Sbjct: 231 ENETGADYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDF-YTATDSSK 289 Query: 496 RTYVKSLDADASGNRFELGLSGNLKDTLNASHF------IFQRVIEGTAGGDTLTGTDGN 549 DA + G S N + LN F I + G GN Sbjct: 290 ALIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAIGGSGN 349 Query: 550 DVMNGNAGTDRVNGGAGADLINGGADADILTGGAGADLFIYNSRLDSYRNYTASGTKQSD 609 D++ GN+ + + GGAG D++ GGA AD L GGAG D F+Y S DS D Sbjct: 350 DILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDST-------VAAYD 402 Query: 610 TITDFNPAEDRIDLSSIGLRGLGD-------GSANTIYLSVNADGSKTYIKTNAVDTTGN 662 I DF D+IDLS+ G G + L +A S T + + + Sbjct: 403 WIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITNLWLHEAGHSSV 462 Query: 663 RFEIALEGNL 672 F + + G Sbjct: 463 DFLVRIVGQA 472 Score = 90.0 bits (223), Expect = 1e-20 Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 28/225 (12%) Query: 319 NGSDNLIRGNLITGSDNSTYGVAERNED----GTDRNSIVGNTI-----------SHTSK 363 L N+ T + +S YG + TD + + ++ S S Sbjct: 252 AAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSN 311 Query: 364 GLTLVYGDGSFA--GDSFPLVTVQGTDANDAITGGAANEMIFGLAGKDTLNGAAGDDILV 421 + +GSF+ G V++ + GG+ N+++ G + + L G AG+D+L Sbjct: 312 NQRINLNEGSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLY 371 Query: 422 GGAGADKLTGGAGADTFRFDQLTDSYRTATTSATDLVTDFDVSQDRIDLSNLGFSGLGS- 480 GGAGAD L GGAG DTF + DS +A D + DF D+IDLS G S Sbjct: 372 GGAGADTLYGGAGRDTFVYGSGQDST----VAAYDWIADFQKGIDKIDLSAFRNEGQLSF 427 Query: 481 ------GKGGTLNISYNATLDRTYVKSLDADASGNRFELGLSGNL 519 GKG + + ++A T + +A S F + + G Sbjct: 428 VQDQFTGKGQEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVGQA 472 Score = 87.7 bits (217), Expect = 9e-20 Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 14/147 (9%) Query: 793 VLTGTENAEALYGTEGDDTILGLGGDDTLRGDTGADIINGGAGRDALYGGDGADTFVYSA 852 + E G G+D ++G D+ L+G G D++ GGAG D LYGG G DTFVY + Sbjct: 333 SIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGS 392 Query: 853 LTDSYRDYDAGGLTATDTIYDFTPGQDKIDVSALGFLGLGN-------GEDHTLYMTLNE 905 DS + A D I DF G DKID+SA G + G+ + + + Sbjct: 393 GQDST-------VAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDA 445 Query: 906 AGDKTYVKSATPDADGNRFEIALSGNL 932 A T + F + + G Sbjct: 446 ANSITNLWLHEAGHSSVDFLVRIVGQA 472 Score = 72.7 bits (178), Expect = 4e-15 Identities = 69/305 (22%), Positives = 114/305 (37%), Gaps = 30/305 (9%) Query: 1311 GTGNALKNVITGNASNNVLDGAAGADLLTGGDGSDSYYVDDAADRVVETNADQQVGGIDT 1370 G NA + + N + D + + G+ + ID Sbjct: 200 GEYNAGEGDPSYNDAVYAEDSYQFSIMSYWGENETGADYNGHYGGA---------PMIDD 250 Query: 1371 VLSSLASYTLGANLENIVITGTGAANATGNTLDNLIYAGAGDNVMDGR----DGNDTVSY 1426 + + Y GAN+ TG NT + A + G DT + Sbjct: 251 IAAIQRLY--GANM--TTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDF 306 Query: 1427 LFATAGVTVALNTSAQQATGGSGLDTLKGTENLTGSQFADTLTGNKNANVLNGGSGNDTL 1486 + + LN + GG KG ++ + G ++L G S ++ L Sbjct: 307 SGYSNNQRINLNEGSFSDVGGL-----KGNVSIAHGVTIENAIGGSGNDILVGNSADNIL 361 Query: 1487 SGGAGDDVLIGGSGADTLIGGTGADRYVFNNSNETGLGGLRDIINGFKAAEGDKLDFTGF 1546 GGAG+DVL GG+GADTL GG G D +V+ + ++ + D I F+ DK+D + F Sbjct: 362 QGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDSTVAA-YDWIADFQKG-IDKIDLSAF 419 Query: 1547 D-ARPLTDAHDAFVFIGNAAFSANNTGELRFADGVLYGNLDDNIGADFEIQLTGVQSLQA 1605 L+ D F G + + L+ + + DF +++ G + Sbjct: 420 RNEGQLSFVQDQFTGKGQEVMLQWDAAN---SITNLWLHEAGHSSVDFLVRIVGQAA--Q 474 Query: 1606 ADIIV 1610 +DIIV Sbjct: 475 SDIIV 479 Score = 50.0 bits (119), Expect = 6e-08 Identities = 45/222 (20%), Positives = 74/222 (33%), Gaps = 17/222 (7%) Query: 1234 DDTLVGSAGNDVLDGDQGADDMTGGDGNDIYV----VDNALDTVTESNDS-PSQVDTVVS 1288 + T + + D T D + + DT S S +++ Sbjct: 261 NMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEG 320 Query: 1289 SVSWQLGANVENLLLTGVSAINGTGNALKNVITGNASNNVLDGAAGADLLTGGDGSDSYY 1348 S S G + GV+ N G + +++ GN+++N+L G AG D+L GG G+D+ Y Sbjct: 321 SFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLY 380 Query: 1349 VDDAADRVV-ETNADQQVGGIDTVLSSLASYTLGANLENIVITGTGAANATGNTLDNLIY 1407 D V + D V D + N + + Sbjct: 381 GGAGRDTFVYGSGQDSTVAAYDWIADFQKGIDKIDLS--------AFRNEGQLSFVQDQF 432 Query: 1408 AGAGDNVMDGRDGNDTVSYL---FATAGVTVALNTSAQQATG 1446 G G VM D ++++ L A L QA Sbjct: 433 TGKGQEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVGQAAQ 474 Score = 48.0 bits (114), Expect = 3e-07 Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 1228 IFGTSDDDTLVGSAGNDVLDGDQGADDMTGGDGNDIYVVDNALDTVTESNDS 1279 + G S D+ L G AGNDVL G GAD + GG G D +V + D+ + D Sbjct: 352 LVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAYDW 403 Score = 31.5 bits (71), Expect = 0.029 Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 5/73 (6%) Query: 805 GTEGDDTILGL----GGDDTLRGDTGADIINGGAGRDALYGGDGADTFVYSALTDSYRD- 859 G D I + G + T R N RD D + ++S D Sbjct: 244 GAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDT 303 Query: 860 YDAGGLTATDTIY 872 +D G + I Sbjct: 304 FDFSGYSNNQRIN 316
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 93.6 bits (232), Expect = 4e-25 Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 31/258 (12%) Query: 5 KKLLLTGASRGIGHATVKHFNAAGWEVFTAS-RQNWVDDCPWAEGLL----NHIHLDLEN 59 K +TGA++GIG A + + G + ++ + D+ + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 60 IDSVSASMAAIKDKLGGRLDALVNNAGVSPKTAEGGRMGVLES-DYSTWIKVFNVNLFST 118 ++ A I+ ++G +D LVN AGV R G++ S W F+VN Sbjct: 69 SAAIDEITARIEREMG-PIDILVNVAGVL-------RPGLIHSLSDEEWEATFSVNSTGV 120 Query: 119 ALLARGLFDELKAAK-GSIINVTSIAGSKVHPFAGV-AYATSKAALSALTREMAFDFGPH 176 +R + + + GSI+ V S P + AYA+SKAA T+ + + + Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGV--PRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 177 GIRVNAIAPGEIDTSI-------------LSPGTAEIVQRLVPMHRLGKPEEVASLIYFL 223 IR N ++PG +T + + G+ E + +P+ +L KP ++A + FL Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 224 CTAGASYVNGAEIHVNGG 241 + A ++ + V+GG Sbjct: 239 VSGQAGHITMHNLCVDGG 256
>ENTEROVIROMP#Enterobacterial virulence outer membrane protein signature. Length = 171 Score = 27.9 bits (62), Expect = 0.010 Identities = 10/26 (38%), Positives = 15/26 (57%) Query: 1 MKKVLISAAIATCLLGMSLTSQAAEN 26 MKK+ +A+A L + TS AA + Sbjct: 1 MKKIACLSALAAVLAFTAGTSVAATS 26
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 29.3 bits (65), Expect = 0.029 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 313 HPNYAEKHDANHGPKLNAGPVIKVNSNQRYATNSETAGFFRHLCMAEEVPVQSFVVRSDM 372 +P Y+EK + G K+N GPV N N A F R V VQ + R D+ Sbjct: 261 YPGYSEKVEVAPGTKVNMGPVTDRNGNPVQV----VATFGRDSQGNTTVDVQ-VIPRPDL 315 Query: 373 ACGSTIGP 380 GS P Sbjct: 316 TPGSAEAP 323
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 59.3 bits (143), Expect = 7e-11 Identities = 56/260 (21%), Positives = 81/260 (31%), Gaps = 22/260 (8%) Query: 863 QAERANSTAVDAPAVEPAQQAPVAEANTAKAPEADAPAIEASTPETPAAAEP----VVEV 918 N+ D P+V P+ +A + A P APA + T ET A VE Sbjct: 996 NITTPNNIQADVPSV-PSNNEEIARVDEAPVPPP-APATPSETTETVAENSKQESKTVEK 1053 Query: 919 PAVEA--PVADDAPVAKPA-PEVEVQPAAIEAPAIAAQTELFEAPHAERVVPFTPTPEPA 975 +A A + VAK A V+ E AQ+ T T E Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEV----AQSGSETKETQTTETKETATVEKE 1109 Query: 976 LQAPVEAAAHEEVPATESSELP--------TPAATAAEPVVVKEEPAPYVAPKAVEEAAP 1027 +A VE +EVP S P P A A + Sbjct: 1110 EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169 Query: 1028 APAEQQPVIVETPVAPVSSTGRAPNDPREVRRRKREEEARRQQEAAAASTPVIAEAAPVA 1087 PA++ VE PV S+T N E + + +++ P V Sbjct: 1170 QPAKETSSNVEQPVTE-STTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVR 1228 Query: 1088 AEAESVQPSQAIEEKTEEAA 1107 + +V+P+ A Sbjct: 1229 SVPHNVEPATTSSNDRSTVA 1248 Score = 54.3 bits (130), Expect = 3e-09 Identities = 42/241 (17%), Positives = 75/241 (31%), Gaps = 36/241 (14%) Query: 899 PAIEASTPETPAAAEPVVEVPAVEAPVADDAPVAKPAPEVEVQPAAIEAPAIAAQTELFE 958 +TP A P V E D+APV PAP + A +++ E Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 959 APHAERVVPFTPTPEPALQAPVEAAAHEEVPATESSELPTPAATAAE--PVVVKEEPAPY 1016 + T + A + A T+++E+ + E KE Sbjct: 1053 KNEQD---ATETTAQNREVA--KEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 1017 VAPKAVEEAAPAPAEQQPVIVETPVAPVSSTGRAPNDPREVRRRKREEEARRQQEAAAAS 1076 KA E +T P ++ +P ++++ E + Q E A + Sbjct: 1108 KEEKAKVETE-----------KTQEVPKVTSQVSP-------KQEQSETVQPQAEPAREN 1149 Query: 1077 TPVIA---EAAPVAAEAESVQPS--------QAIEEKTEEAATEQPAVKPQHEAEKENEP 1125 P + + A++ QP+ Q + E T P++ +P Sbjct: 1150 DPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209 Query: 1126 K 1126 Sbjct: 1210 T 1210 Score = 52.8 bits (126), Expect = 7e-09 Identities = 49/304 (16%), Positives = 87/304 (28%), Gaps = 31/304 (10%) Query: 819 EENGSAENAEQGSSATDLSAGLGFTAAAAAGGVISATAEADAHQQAERANSTAVDAPAVE 878 E+ + ++ ++ A + + + I+ EA A S + A Sbjct: 986 EKRNQTVDTTNITTPNNIQADV--PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 879 PAQQAPVAEANTAKAPEADAP---AIEASTPETPAAAEPVVEVPAVEAPVADDAP-VAKP 934 Q++ E N A E A + + A + EV + + K Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQ-TNEVAQSGSETKETQTTETKE 1102 Query: 935 APEVEVQPAA-------IEAPAIAAQTELFEAPHAERVVPFTPTPEPALQ-APVEAAAHE 986 VE + A E P + +Q +P E+ P EPA + P Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQV----SPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 987 EVPATESSELPTPAATAAEPVVVKEEPAPYVAPKAVEEAAPAPAEQQPVIVETPVAPVSS 1046 + S+ T A T V + E P + Sbjct: 1159 Q------SQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE-NPENTTPATTQPTV 1211 Query: 1047 TGRAPNDPREVRRRKREEEARRQQEAAAASTPVIAEAAPVA-AEAESVQPSQAIEEKTEE 1105 + N P+ RR E A S+ + + VA + S + + + + Sbjct: 1212 NSESSNKPKNRHRRSVRSVP-HNVEPATTSSN---DRSTVALCDLTSTNTNAVLSDARAK 1267 Query: 1106 AATE 1109 A Sbjct: 1268 AQFV 1271 Score = 50.1 bits (119), Expect = 6e-08 Identities = 50/298 (16%), Positives = 86/298 (28%), Gaps = 46/298 (15%) Query: 593 PAAPVVVEKPAAEQRPARNEERRNGRQQS---RGRNNRRDEERKPREERAPREERAERAP 649 PA P + AE ++ Q + +N +E K + + ++ Sbjct: 1030 PATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089 Query: 650 RE--ERAPREERAP----REERAPRE-ERTVREPREAREDSA----PREERP-ARTSRER 697 E E E + +EE+A E E+T P+ + S +P A +RE Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149 Query: 698 KPREAREDRPVRELREPLDAAPAVNLAREERPERAPREERQP--RAPREERQPRAEQAAA 755 P ++ + PA + P E P A Sbjct: 1150 DPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ---PVTESTTVNTGNSVVENPENTTPAT 1206 Query: 756 AVSEEEVLLNEEQINDENQEGNDGSEGDRPRRRSRGQRRRSNRRERQRDANGNVIEGSEE 815 + +N E+ +P+ R R R + A + + S Sbjct: 1207 T---------QPTVNSESSN--------KPKNRHR--RSVRSVPHNVEPATTSSNDRSTV 1247 Query: 816 NGSEENGSAENAEQGSSATDLSAGLGFTAAAAAGGV---ISATAEADAHQQAERANST 870 + + NA +D A F A V IS + Q ++T Sbjct: 1248 ALCDLTSTNTNAV----LSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSNT 1301 Score = 47.4 bits (112), Expect = 4e-07 Identities = 35/175 (20%), Positives = 53/175 (30%), Gaps = 28/175 (16%) Query: 976 LQAPVEAAAHEEVPATESSELPTPAATAAEPVVVKEEPAPYVAPKAVEEAAPAPA---EQ 1032 L P ++ V T TP A+ V PAPA E Sbjct: 980 LYNPEVEKRNQTVDTTNI---TTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSET 1036 Query: 1033 QPVIVETPVAPVSSTGRAPNDPREVRRRKRE----------------EEARRQQEAAAAS 1076 + E + + D E + RE E A+ E Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 1077 TPVIAEAAPVAAEAESVQPSQAIEEKTEEAATEQP------AVKPQHEAEKENEP 1125 T E A V E ++ ++ +E + + P V+PQ E +EN+P Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Score = 44.7 bits (105), Expect = 2e-06 Identities = 53/312 (16%), Positives = 86/312 (27%), Gaps = 51/312 (16%) Query: 699 PREAREDRPVRELREPLDAA-----PAVNLAREE--RPERAPREERQPRAPREERQPRAE 751 P + ++ V P+V EE R + AP P P E + AE Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 752 QAAAAVSEEEVLLNEEQINDENQEGNDGSEGDRPRRRSRGQRRRSNRRERQRDANGNVIE 811 + E + RE ++A NV Sbjct: 1043 NSKQESKTVEK------------------------NEQDATETTAQNREVAKEAKSNVKA 1078 Query: 812 GSEENGSEENGSAENAEQGSSATDLSAGLGFTAAAAAGGVISATAEADAHQQAERANSTA 871 ++ N E A+ GS + T + E A + E+ Sbjct: 1079 NTQTN--------EVAQSGSETKE-------TQTTETKETATVEKEEKAKVETEKTQEVP 1123 Query: 872 VDAPAVEPAQQAPVAEANTAKAPEADAPAIEASTPETPAAAEPVVEVPAVEAPVADDAPV 931 V P Q+ A+ + P + P++ E PA E + PV Sbjct: 1124 KVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPV 1183 Query: 932 AKPAPEVEVQPAAIEAPAIAAQTELFEAPHAERVVPFTPTPEPALQAPVEAAAHEEVPAT 991 + V + +E P + + P+ + V + H PAT Sbjct: 1184 TESTT-VNTGNSVVENP----ENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPAT 1238 Query: 992 ESSELPTPAATA 1003 SS + A Sbjct: 1239 TSSNDRSTVALC 1250 Score = 36.6 bits (84), Expect = 8e-04 Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 20/153 (13%) Query: 995 ELPTPAATAAEPVVVKEEPAPYVAPKAVEEAAPAPAEQQPVIVETPVAPVSSTGRAPNDP 1054 +L P V +A + P+ E+ + E PV P + + Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 1055 REVRRRKREEEARRQQEAAAAST------------------PVIAEAAPVAAEAESVQPS 1096 K+E + + E A T E A +E + Q + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 1097 QAIEEKTEEAATEQPAV--KPQHEAEKENEPKP 1127 + E T E + K Q + ++ P Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSP 1131
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 46.1 bits (109), Expect = 6e-09 Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 5/104 (4%) Query: 47 ENRLDNSNASTEAVFAAVEDNKLLGVAGLSVETRNKARHKSTLFGMYVPQAHRNRGIGYQ 106 + + +A F +N +G ++ R+ + + + V + +R +G+G Sbjct: 54 DMDVSYVEEEGKAAFLYYLENNCIG----RIKIRSNWNGYALIEDIAVAKDYRKKGVGTA 109 Query: 107 LMCSVLEHARSRPELLVVQLTVTQGNAAAQGLYERMGFVTFGVE 150 L+ +E A+ + L N +A Y + F+ V+ Sbjct: 110 LLHKAIEWAKENH-FCGLMLETQDINISACHFYAKHHFIIGAVD 152
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 26.3 bits (58), Expect = 0.043 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 4/19 (21%) Query: 28 SPVVEKHV----SIAELCE 42 SPV EKH+ ++ ELC Sbjct: 102 SPVSEKHLADGMTVGELCA 120
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 58.1 bits (140), Expect = 2e-10 Identities = 74/297 (24%), Positives = 107/297 (36%), Gaps = 64/297 (21%) Query: 771 GQDVIHGGGGNDTFIYNAG-YGYLEIDNAYAAGEVPILKFGTGIT-AASLTVTTTPSGNS 828 G I+ G G+D Y+ GYL ID GT T A + TVT G+ Sbjct: 628 GSANIYAGKGHDVVYYDKTDTGYLTID-------------GTKATEAGNYTVTRVLGGDV 674 Query: 829 LIITDGIEGDQIVLDYSLLNSNYGVKKVQFSDGSSLAFEDLVTMKDQLLEIKNSTGTFGN 888 ++ + ++ ++ + + Y + +G +L T D L ++ GT Sbjct: 675 KVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNL------TETDNLYSVEELIGTTRA 728 Query: 889 DTLNGSARAQTFDGKGGQDVIHGGGGNDTFIYNAGYGYLEIDNAYAAGEVPILKFGTGIT 948 D GS F G G D+I G GND + G L N Sbjct: 729 DKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGN----------------- 771 Query: 949 AASLTVTTTPSGNSLIITDGIEGDQVVLDYSLLNSNYGVKKVQFSDGSS-LAFEDLVTMK 1007 G+ + G +G+ L G + DG + K Sbjct: 772 -----------GDDQL--YGGDGNDK------LIGVAGNNYLNGGDGDDEFQVQGNSLAK 812 Query: 1008 DQLLELKNSTGTLGNDTLNGSARAQTFDGKGGQDVIHGGGGNDTFIYKAGYGYLEID 1064 + L G GND L GS A DG G D++ GG GND + Y +GYG+ ID Sbjct: 813 NVLF------GGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIID 863 Score = 54.2 bits (130), Expect = 3e-09 Identities = 76/297 (25%), Positives = 109/297 (36%), Gaps = 64/297 (21%) Query: 905 GQDVIHGGGGNDTFIYNAG-YGYLEIDNAYAAGEVPILKFGTGIT-AASLTVTTTPSGNS 962 G I+ G G+D Y+ GYL ID GT T A + TVT G+ Sbjct: 628 GSANIYAGKGHDVVYYDKTDTGYLTID-------------GTKATEAGNYTVTRVLGGDV 674 Query: 963 LIITDGIEGDQVVLDYSLLNSNYGVKKVQFSDGSSLAFEDLVTMKDQLLELKNSTGTLGN 1022 ++ + ++ +V + + Y + +G +L T D L ++ GT Sbjct: 675 KVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNL------TETDNLYSVEELIGTTRA 728 Query: 1023 DTLNGSARAQTFDGKGGQDVIHGGGGNDTFIYKAGYGYLEIDNAYAAGEVPILKFGIGIT 1082 D GS F G G D+I G GND G L N Sbjct: 729 DKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGN----------------- 771 Query: 1083 AASLTVTTTPSGNSLIITDGIEG-DQVVLDYSLLYPNYGVKKAEFSDGSSLAFEDLVTMK 1141 G+ + G +G D+++ Y N G EF + K Sbjct: 772 -----------GDDQL--YGGDGNDKLIGVAGNNYLNGGDGDDEFQ------VQGNSLAK 812 Query: 1142 DQLLEIKNSTGTLGNDTLNGSARAQTFDGKGGQDVIHGGGGNDTFIFNAGYGYLEID 1198 + L G GND L GS A DG G D++ GG GND + + +GYG+ ID Sbjct: 813 NVLF------GGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIID 863 Score = 48.8 bits (116), Expect = 1e-07 Identities = 75/310 (24%), Positives = 107/310 (34%), Gaps = 70/310 (22%) Query: 624 DVVFDGGGGGGGGGGDTVKGDGGNDVFIYN-GGYGYLEIDNSYLVGNVPILKFGPGITGA 682 D VF G G G+DV Y+ GYL ID G T A Sbjct: 621 DKVFLSAGSANIYAGK------GHDVVYYDKTDTGYLTID-------------GTKATEA 661 Query: 683 -SLTVTTTPSGNSLIITDGIEGDQIVLDYSLLNSNYGVKKVQFSDGSSLAFEDLVEMKDQ 741 + TVT G+ ++ + ++ ++ + + Y + +G +L D Sbjct: 662 GNYTVTRVLGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNL------TETDN 715 Query: 742 LLELKNSTGTLGNDTLNGSARAQTFDGKGGQDVIHGGGGNDTFIYNAGYGYLEIDNAYAA 801 L ++ GT D GS F G G D+I G GND + G L N Sbjct: 716 LYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGN---- 771 Query: 802 GEVPILKFGTGITAASLTVTTTPSGNSLIITDGIEGDQIVLDYSLLNSNYGVKKVQFSDG 861 G+ + G +G+ L G + DG Sbjct: 772 ------------------------GDDQL--YGGDGNDK------LIGVAGNNYLNGGDG 799 Query: 862 SS-LAFEDLVTMKDQLLEIKNSTGTFGNDTLNGSARAQTFDGKGGQDVIHGGGGNDTFIY 920 + K+ L G GND L GS A DG G D++ GG GND + Y Sbjct: 800 DDEFQVQGNSLAKNVLF------GGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRY 853 Query: 921 NAGYGYLEID 930 +GYG+ ID Sbjct: 854 LSGYGHHIID 863
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 7e-19 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 6 RILIIDDQRPNLDLMEQLLAREGLTNVL-SSTEPLRTLDLFNSFEPDLVVLDLHMPEFDG 64 IL+ DD ++ Q L+R G + S+ L + + DLVV D+ MP+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATL--WRWIAAGDGDLVVTDVVMPDENA 62 Query: 65 FAVLEQLNRRISANDYLPIMVLTADATRDTRLRALALGARDFISKPLDALETMLRIWNLL 124 F +L ++ + LP++V++A T T ++A GA D++ KP D E + I L Sbjct: 63 FDLLPRIKKA---RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 125 ETR 127 Sbjct: 120 AEP 122
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.9 bits (140), Expect = 7e-11 Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 656 GKLLCIEDNLSSMALIETLMQRRPGIQLLSSMQGQLGLDLARQHAPQLILLDLNLPDIKG 715 +L +D+ + ++ + R G + + L++ D+ +PD Sbjct: 4 ATILVADDDAAIRTVLNQALSRA-GYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 716 LEVLHRLRRLPATANTPVLMITADTRDKASCELKQAGATAILTKPIQVPVFLALLDQYLP 775 ++L R+++ A + PVL+++A + + + GA L KP + + ++ + L Sbjct: 63 FDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 776 EPT 778 EP Sbjct: 121 EPK 123
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.5 bits (139), Expect = 6e-12 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 2/115 (1%) Query: 6 RLVLADDHEVTRTGFVSLLAGHPEFEVVGQAADGQQAIDLCQELQPDIAILDIRMPVLNG 65 +++ADD RT L+ V ++ D+ + D+ MP N Sbjct: 5 TILVADDDAAIRTVLNQALSR--AGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 66 LGAARILQQRMPDLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIAGLQR 120 +++ PDL V++ + ++ A GA YL K E+I + R Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>adhesinb#Adhesin B signature. Length = 310 Score = 54.9 bits (132), Expect = 8e-11 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 4/157 (2%) Query: 136 WLASNNMGRMADVLAADLVQLAPSAKPKIEANLAAFKQQLLKLSASSEAALA--GADNLS 193 WL N A +A L + P+ K E NL A+ ++L L ++ + Sbjct: 142 WLNLENGIIYAQNIAKRLSEKDPANKETYEKNLKAYVEKLSALDKEAKEKFNNIPGEKKM 201 Query: 194 VVSLSDRFGYLISGLNLELIDSQ-VLTDEQWTPEALSKLSATLKDNDVALVLDHRQPPEA 252 +V+ F Y N+ + T+E+ TP+ + L L+ V + + Sbjct: 202 IVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPDQIKTLVEKLRKTKVPSLFVESSVDDR 261 Query: 253 VKSAIEAAGSTLLVLGIDGADPLAELQGDIQGVIEVL 289 + + + + + D +AE + ++ Sbjct: 262 PMKTV-SKDTNIPIYAKIFTDSVAEKGEEGDSYYSMM 297
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 170 bits (433), Expect = 3e-53 Identities = 76/304 (25%), Positives = 135/304 (44%), Gaps = 11/304 (3%) Query: 12 LLRVLLAGLFAALLAPSSYAADPAKRLRIGITLHPYYSYVSNIVGDKADVVPLIPAGFNP 71 LL + L+ + A ++L++ T NI GDK D+ ++P G +P Sbjct: 7 LLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDP 66 Query: 72 HAYEPRAEDIKRIGSLDVIVLNGV-----GHDDFADRMIAASETPNIKTIEANADVPLLA 126 H YEP ED+K+ D+I NG+ G+ F + A +T N + V ++ Sbjct: 67 HEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIY 126 Query: 127 ATGVAARGAGKVVNPHTFLSISASIAQVNNIARELGKLDPDNAKTYTANARAYGKRLRQM 186 G +G +PH +L++ I NIA++L DP+N + Y N + Y +L ++ Sbjct: 127 LEGQNEKGKE---DPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKL 183 Query: 187 RADALAKLTKAPNADLRVATVHAAYDYLLREFGLEVTAVVEPAHGIEPSPSQLKKTIDQL 246 ++ K K P + T A+ Y + +G+ + E E +P Q+K +++L Sbjct: 184 DKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKL 243 Query: 247 RELDVKVIFSEMDFPSTYVDTIQRESGVKLY-PLSHISYGEY--TADKYEKEMAGNLDTV 303 R+ V +F E + T+ +++ + +Y + S E D Y M NLD + Sbjct: 244 RQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKI 303 Query: 304 VRAI 307 + Sbjct: 304 AEGL 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 2e-04 Identities = 32/175 (18%), Positives = 51/175 (29%), Gaps = 13/175 (7%) Query: 26 EGDAVKRDEMLVDIETDKVVLEVLAEADGVMGSITKEEGAIVLSNEVLGTLNDGATASAA 85 + +RD + V + + V L + G L N + N + Sbjct: 944 DASKAQRDHLNVSLVGNTVDLGAWKY------KLRNVNGRYDLYNPEVEKRNQTVDTTNI 997 Query: 86 TAPAAAPASAPAA----APAAAGEEDPIAAPAARQLAEENGINLASVKGTGKDGRITKED 141 T P A P+ A +E P+ PA +E + K K ++D Sbjct: 998 TTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQD 1057 Query: 142 VVAAVEAKKSAPAAAPAAKPAAAAAPVVAAGDRTEKRVPMTRVRATVAKRLVEAQ 196 A E A AK A ++ T+ T VE + Sbjct: 1058 ---ATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE 1109
>PF06580#Sensor histidine kinase Length = 349 Score = 36.4 bits (84), Expect = 1e-04 Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 29/131 (22%) Query: 219 GDDVQYQGQCKPLRTQPMALRSCLQNLVDNALRYA-------GSVHIVIEDSAERVRISV 271 D +Q++ Q P +Q LV+N +++ G + + V + V Sbjct: 237 EDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEV 296 Query: 272 VDHGPGIAPEFHEAVFEPFYRLEGSRNRNSGGIGMGMSIAREAARRIGGE---LTLAQTP 328 + G E G G+ RE + + G + L++ Sbjct: 297 ENTGSLALKNTKE------------------STGTGLQNVRERLQMLYGTEAQIKLSEKQ 338 Query: 329 GGGLTAILNLP 339 G A++ +P Sbjct: 339 GKV-NAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.9 bits (223), Expect = 9e-23 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 1/130 (0%) Query: 21 RALIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDGLS 80 L+ DDD AIR +L L+R + R ++ + + + D+VV D+++P E+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 81 LCRWLRST-SDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRD 139 L ++ D+P+L+++A+ I E GA DY+ KPF+ EL+ I L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 140 ERSDQRTTIR 149 S + Sbjct: 125 RPSKLEDDSQ 134
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 783 bits (2024), Expect = 0.0 Identities = 267/870 (30%), Positives = 426/870 (48%), Gaps = 56/870 (6%) Query: 10 IPVRLRFMQVLIVCGSVTVVLEPTRAATAVNFQPGFLRQGQDYDSAAAASVLNQLSAVES 69 + F+++ + C ++ + F P FL D A + L++ + Sbjct: 21 HRLAGFFVRLFVACAFAAQA---PLSSAELYFNPRFLA-----DDPQAVADLSRFENGQE 72 Query: 70 LGPGEHWVEIHVNMRYFGQRQIRFDADPQGNGLLPCLSPELLEQIGVRLGSLADPALLQ- 128 L PG + V+I++N Y R + F+ G++PCL+ L +G+ S++ LL Sbjct: 73 LPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLAD 132 Query: 129 VACVALGQLIPDARVVLDGGRLQLSISIPQIAMRRDANGRVDPALWDYGINAAFINYQTS 188 ACV L +I DA LD G+ +L+++IPQ M A G + P LWD GINA +NY S Sbjct: 133 DACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFS 192 Query: 189 AQQTTHRETGTSSSADLYLNTGVNLGSWRLRSNQS-----VRQDAQGHREWTRAYAYAQR 243 +R G S A L L +G+N+G+WRLR N + + +W + +R Sbjct: 193 GNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLER 252 Query: 244 DLPGTHANLTLGETYTGGDVFRSVPIKGGLIKTDQEMLPDSLQGYAPVIRGVAQSRAKLE 303 D+ + LTLG+ YT GD+F + +G + +D MLPDS +G+APVI G+A+ A++ Sbjct: 253 DIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVT 312 Query: 304 VLRNGYPIYSTYVSAGPYEIDDLN-TAGSGELEIVLTEADGQVRRFTQPYSTMSNLLREG 362 + +NGY IY++ V GP+ I+D+ SG+L++ + EADG + FT PYS++ L REG Sbjct: 313 IKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREG 372 Query: 363 AWKYSAALGRF-NGAYATEHPWLWQGTLAVGAGWNSTLYGGLITSDFYHAAALGVSRDMG 421 +YS G + +G E P +Q TL G T+YGG +D Y A G+ ++MG Sbjct: 373 HTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMG 432 Query: 422 TLGAMAFDVTRSRASIDQPGQSSVQGMSYAIKYGKAFT-TRTNLRFAGYRYSTEGYRDFD 480 LGA++ D+T++ +++ P S G S Y K+ + TN++ GYRYST GY +F Sbjct: 433 ALGALSVDMTQANSTL--PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFA 490 Query: 481 EAVSQRSNDA-------------------TFTGSRRSRLEASVHQRIGLRSSVGLTLSQQ 521 + R N ++R +L+ +V Q++G S++ L+ S Q Sbjct: 491 DTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQ 550 Query: 522 DYWGSDIEQRQFQFNFNTHRAGITYNFYASQSLSAASSSRGNDRQFGLSISMPLDTGHSS 581 YWG+ QFQ NT I + S + +A +G D+ L++++P S Sbjct: 551 TYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNA--WQKGRDQMLALNVNIPFSHWLRS 608 Query: 582 NATFDLQ----------SSANRHSQRGSLSGSLYE-NRVNYHASLSNDDGK----QQSAG 626 ++ + R + + G+L E N ++Y G + Sbjct: 609 DSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGY 668 Query: 627 LAAGYQAPFASLGAGVTQGNDYRSASVNASGALLLHADGIEFGPNLGDTIALIEVPDTPG 686 Y+ + + G + +D + SG +L HA+G+ G L DT+ L++ P Sbjct: 669 ATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKD 728 Query: 687 VGIQNATGVRTNSRGYALMPYLRPYRHNPITLQTDRLGPEVEIDNASTQVVPARGAVIKT 746 ++N TGVRT+ RGYA++PY YR N + L T+ L V++DNA VVP RGA+++ Sbjct: 729 AKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRA 788 Query: 747 TFAARTVTRLIINATTDGGKPLPFGAQVSDAQGNILGIAGQGGQILLSTGMQAQTLDVRW 806 F AR +L++ T + KPLPFGA V+ GI GQ+ LS A + V+W Sbjct: 789 EFKARVGIKLLMTLTHN-NKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKW 847 Query: 807 GEKSDPQCHLHIDPAGMPLAKGYRMQDMTC 836 GE+ + C + + C Sbjct: 848 GEEENAHCVANYQLPPESQQQLLTQLSAEC 877
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 29.8 bits (67), Expect = 0.049 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 400 LFASLVAWGVSGVLALPNISLI------FLAAVLLVAVGSSM------GPALACAGLSFL 447 L A+L AW G ALP + L+ F+ L++ GP LA AG L Sbjct: 218 LLAALGAWL--GWQALPIVLLLSSLVGAFMGIGLILLRNHHQSKPIPFGPYLAIAGWIAL 275 Query: 448 AY 449 + Sbjct: 276 LW 277
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.1 bits (239), Expect = 3e-25 Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 4/159 (2%) Query: 3 QAATILVIDDEPQIRKFLRISLVSQGYKVLEAATGGDGLTQAALNKPDLLVLDLGLPDMD 62 ATILV DD+ IR L +L GY V + A DL+V D+ +PD + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GQQVLSEFREWSA-VPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARI-RALLR 120 +L ++ +PVLV+S + + ++A + GA DY+ KPF + E + I RAL Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 121 QVSGSDKPESALQFGPLTV--DLAYRRVLLDGQEVALTR 157 K E Q G V A + + + T Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD 160
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.010 Identities = 10/43 (23%), Positives = 20/43 (46%) Query: 103 DEINRATPKSQSALLEAMEEGQVSIEGATRLLPDPFFVIATQN 145 DEI +Q+ LL +++G+ + G + ++A N Sbjct: 238 DEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN 280
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 28.3 bits (63), Expect = 0.030 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 8/70 (11%) Query: 165 DRHDLRLLIKRVRYAAEAYPELSHQPKNMQARLKAAQGE-LGDWHDHLQWLAQAAEQPDL 223 + DLR I V E+S+Q + L +Q + L + +WL+Q + L Sbjct: 521 NGQDLRTGILTVD-------EISNQSTTLNKLLGGSQCQPLNKAQEVQKWLSQNNKSSYL 573 Query: 224 APCIAGWQIG 233 C +G Sbjct: 574 TQCKMDKSLG 583
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.0 bits (83), Expect = 2e-04 Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 24/149 (16%) Query: 41 VLIEGPRGMAKSTLARGLADV--LASGQFVTLPLGATEERLVGTLDLDAAL-------AE 91 ++I G G K +AR L D +G FV + + A L +++ L Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDL-----IESELFGHEKGAFT 217 Query: 92 GRAQFSPGVLAKADGGVLYVDEVNLLADHLVDLLLDVAASGVNMVERDGISHRHAARFVL 151 G S G +A+GG L++DE+ + LL V G G + + Sbjct: 218 GAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQG--EYTTVGGRTPIRSDVRI 275 Query: 152 IGTMNP------EEGELRPQLLDRFGLNV 174 + N +G R L R LNV Sbjct: 276 VAATNKDLKQSINQGLFREDLYYR--LNV 302
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 337 bits (865), Expect = e-114 Identities = 147/478 (30%), Positives = 221/478 (46%), Gaps = 51/478 (10%) Query: 9 HLLIIDGGDD---CHPLIPALSDAGWTVQESTSGSTF-------SPDRDVGLIRLTSGHF 58 +L+ D DD L ALS AG+ V+ +++ +T D V + + + Sbjct: 5 TILVAD--DDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 59 EQLPRLQELVAHSNMRWVAVLSANDLQREKIGDFVCQWFFDFHALPFDAARLHGTLDKAF 118 L L + V V+SA + I +D+ PFD L G + +A Sbjct: 63 FDL--LPRIKKARPDLPVLVMSAQNTFMTAIKASEKG-AYDYLPKPFDLTELIGIIGRAL 119 Query: 119 AAGRPEAQGGLALSEAEAELLGDSRPIRELRKLLSWLAPIDSPVLIRGERGTGKELIARS 178 A + S+ L+G S ++E+ ++L+ L D ++I GE GTGKEL+AR+ Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 179 LHVQSQRRGKPFVVVDCGAFTGHSIQAELFGHEDDAFDGAQAHRIGLLEAADGGTLLLDE 238 LH +RR PFV ++ A I++ELFGHE AF GAQ G E A+GGTL LDE Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239 Query: 239 VGDLPLETQTSLLRFLEDRQIERLGGGESIAVDVRVLAATREDLETAVRKKRFREDLYYQ 298 +GD+P++ QT LLR L+ + +GG I DVR++AAT +DL+ ++ + FREDLYY+ Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299 Query: 299 LNVLQVGVAPLRERHGDLALLANHFAHFYSQDSGRRARSFSQDALVALGKHDWPGNVREL 358 LNV+ + + PLR+R D+ L HF ++ G + F Q+AL + H WPGNVREL Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVREL 358 Query: 359 AGRVRRGLLLAEGRQIEAANLGLLGE---------------------------------- 384 VRR L I + Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 385 -EDSAGSMGTLEEYKSRAERQALCDVLTRHSDNLSVAARVLGISRPTFYRLLHKHQIR 441 D+ G + + E + LT N AA +LG++R T + + + + Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 90.1 bits (223), Expect = 3e-23 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 25/228 (10%) Query: 29 GIAEVNPMSKP--------LVRWPINPLRTAVIVVDMQKVFCEPTGALYVKSTADIVQPI 80 I + P P V W +P R +++ DMQ F + A ++ I Sbjct: 2 AIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTA-GASPVTELSANI 60 Query: 81 QKLLQAARAAQVMVIYLRHIVRGDGSDTGRMRDLY-PNVDQILARHDPDVEVIEALAPQS 139 +KL + V+Y + D + D + P L + ++I LAP+ Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPG----LNSGPYEEKIITELAPED 116 Query: 140 DDVIVDKLFYSGFHNTDLDTVLRARDVDTIIVCGTVTNVCCETTIRDGVHREYKVIALSD 199 DD+++ K YS F T+L ++R D +I+ G ++ C T + + K + D Sbjct: 117 DDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGD 176 Query: 200 ANAAMDYPDVGFGAVSAADVQRISLTTIAYEFGEVTTTAEVIRRIESA 247 A A D+ + + +++L A T ++ ++++A Sbjct: 177 AVA--DF---------SLEKHQMALEYAAGRCAFTVMTDSLLDQLQNA 213
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 163 bits (415), Expect = 6e-50 Identities = 80/344 (23%), Positives = 140/344 (40%), Gaps = 37/344 (10%) Query: 2 ILVTGGAGYIGAHVALELLEDGHDVVVLDNLCNSSRETL---SRVETLSGRQVDFIHGDV 58 LVTG AG+IG HV+ LLE GH VV +DNL N + +R+E L+ F D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNL-NDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 59 RSKATLNRLFARHPVNAVVHCAGLKAVGESVREPLRYFETNVSGSVNLCQAMAQAGVFNL 118 + + LFA V AV S+ P Y ++N++G +N+ + + +L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 119 LFSSSATVYGDCEQMPLDENCPLGLPTNPYGHSKMMAEHVMKSVARSDPRWSIGLLRYFN 178 L++SS++VYG +MP + + P + Y +K E + + + + G LR+F Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATG-LRFFT 180 Query: 179 PIGAHSSGLLGESPCNTPNNLLPFLLQVANRRRPALHIFGTDYPTPDGTGVRDYLHVVDL 238 G P P ++ F A ++ ++ G RD+ ++ D+ Sbjct: 181 VYG----------PWGRP-DMALFKFTKAMLEGKSIDVYN------YGKMKRDFTYIDDI 223 Query: 239 AEGHLKALDRI---------------RSEQGVSVWNLGTGQGYSVLEVVHAFERISGKTV 283 AE ++ D I S V+N+G +++ + A E G Sbjct: 224 AEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEA 283 Query: 284 PLIFEPRRAGDIAVCWSDPGKALRELDWRARFNLDSMLTDAWRW 327 P + GD+ +D + + + + + W Sbjct: 284 KKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 4e-16 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 2/118 (1%) Query: 384 RILIVEDRPDVAELAKMVLDDYGYICEIVLNAREALKKFESGSRYDLLFTDLIMPGGMNG 443 IL+ +D + + L GY I NA + +G DL+ TD++MP N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMP-DENA 62 Query: 444 VMLAREVRRRYPKIKVLLTTGYAESSIERTDIGGSEFDVVSKPCMPQDLARKVRQVLD 501 L +++ P + VL+ + +D + KP +L + + L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>cloacin#Cloacin signature. Length = 551 Score = 57.0 bits (137), Expect = 7e-11 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 4/84 (4%) Query: 245 GGTGTGNGSGSGSGSGSGTGSGSGSGSGSGSGSGSGSGSGT---GSGSGSGTGSGSGSGS 301 GG G G+ +G+ S SG+ G +G G G G+ GSG S G GSGSG G GSG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 302 GSGSGTGSGSGTGTGSGGNGTCTS 325 G+G G SG G+G+GGN + + Sbjct: 63 GNG-GGNGNSGGGSGTGGNLSAVA 85 Score = 54.3 bits (130), Expect = 5e-10 Identities = 40/110 (36%), Positives = 50/110 (45%), Gaps = 6/110 (5%) Query: 225 SGSDSGTGTGTGSGSDTGSGGGTGTGNGSGSGSGSGSGTGS-----GSGSGSGSGSGSGS 279 SG D G G TG+ S +G+ G TG G G G+ GSG S G GSGSG G GS Sbjct: 2 SGGD-GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 280 GSGSGTGSGSGSGTGSGSGSGSGSGSGTGSGSGTGTGSGGNGTCTSDCGE 329 G G+G G+G+ G G+ S + G + G G S Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 53.9 bits (129), Expect = 7e-10 Identities = 37/101 (36%), Positives = 45/101 (44%), Gaps = 3/101 (2%) Query: 208 GSGSGGNTGTTPMPGTESGSDSGTGTGTGSGSDTGSG-GGTGTGNGSGSGSGSGSGTGSG 266 G G G NTG G +G TG G G G+ GSG G GSGSG G GSG Sbjct: 4 GDGRGHNTGAHSTSGNINGGP--TGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 267 SGSGSGSGSGSGSGSGSGTGSGSGSGTGSGSGSGSGSGSGT 307 G+G G+G+ G G S + G + S G+G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 47.4 bits (112), Expect = 7e-08 Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Query: 258 GSGSGTGSGSGSGSGSGSGSGSGSGSGTGSGSGSGTGS-----GSGSGSGSGSGTGSGSG 312 G G G +G+ S SG+ +G +G G G G+ GSG S G GSGSG G GSG G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 313 TGTGSGGNGTCTSDCGEGDGPST 335 G G+G +G + G + Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAA 86 Score = 43.5 bits (102), Expect = 1e-06 Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Query: 207 SGSGSGGNTGTTPMPGTESGSDSGTGT---GTGSGSDTGSGGGTGTGNGSGSGSGSGSGT 263 SG+ +GG TG G GS + G GSGS GGG+G GNG G+G+ G Sbjct: 17 SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSG 76 Query: 264 GSGSGSGSGSGSGSGSGSGSGTGSGSGSGTGSGS 297 G+ S + G + S G+G + + S Sbjct: 77 TGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 35.8 bits (82), Expect = 3e-04 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 203 PSADSGSGSGGNTGTTPMPGTESGSDSGTGTGTGSGSDTGSGGGTGTGNGSGSGSGSGSG 262 + GSG ++ P G SG+G G GS G+GGG G G G+ S Sbjct: 29 VGGGASDGSGWSSENNP-----WGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Query: 263 TGSGSGSGSGSGSGSGSGSGSGTGSGS 289 + G + S G+G + + S Sbjct: 84 VAAPVAFGFPALSTPGAGGLAVSISAG 110
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 26.3 bits (57), Expect = 0.011 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 5 EAFAEALRNMRLR-KGLTQEDFGLVSSRTYISSLERGMKGVTLEKVTQLADR 55 +A A+A N+ K Q+D +RT +S +R + G EK++QL D+ Sbjct: 84 QATAKARANLAANLKSTLQKDLENEKTRTVDASGKRSISGTDTEKISQLVDK 135
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.5 bits (66), Expect = 0.008 Identities = 19/67 (28%), Positives = 30/67 (44%) Query: 9 LGVDAYDRLTLGRKPQAEVMEPGFKYNLADLNASIALVQLQRLDAINAKRQALASHYLER 68 LGVD + G Q + G + N+A A +LV + LD + A+ L + + Sbjct: 299 LGVDWRVGIRTGNNHQVVIKTTGDQSNIASNGALGSLVDARGLDYLLARVNLLENEGSAQ 358 Query: 69 LASSPVL 75 + S P L Sbjct: 359 VVSRPTL 365
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 103 bits (259), Expect = 3e-26 Identities = 77/362 (21%), Positives = 140/362 (38%), Gaps = 63/362 (17%) Query: 320 RVLILGVNGFIGNHLSERLLQ--------DDRYDIYGMDIGSDAIERLRTKPNFHFIEGD 371 + L+ G GFIG H+S+RLL+ D+ D Y + + +E L +P F F + D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA-QPGFQFHKID 60 Query: 372 ISIHTEWIE--YHIKKCDVVLPLVAIATPIEYT-RNPLRVFELDFEENLKIVRYCVKYN- 427 ++ E + + + V + Y+ NP + + L I+ C Sbjct: 61 LADR-EGMTDLFASGHFERVFISPHRLA-VRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 428 KRVIFPSTSEVYGMCQDASFNEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGQ-KGLQ 486 + +++ S+S VYG+ + F+ D ++ +Y+ +K+ + + Y GL Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTD------DSVDHPVSLYAATKKANELMAHTYSHLYGLP 172 Query: 487 FTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFT---DVA 543 T R F GP R D A ++A+ +EG I + + G KR FT D+A Sbjct: 173 ATGLRFFTVYGPW-GRPDMALFKFTKAM-------LEGKSIDVYNYGKMKRDFTYIDDIA 224 Query: 544 DGIEALARIIENRDGCCNG------------QIINIGNPDNEASIRQLGEELLRQFEAHP 591 + I L +I + D ++ NIGN + + + L Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYI--QALEDALGIE 282 Query: 592 LRGNF-PPFAGFREVESQSFYGKGYQDVSHRKPSIDNARQLIGWTPGIELSETIGKTLDF 650 + N P G DV ++IG+TP + + + +++ Sbjct: 283 AKKNMLPLQPG---------------DVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327 Query: 651 FL 652 + Sbjct: 328 YR 329
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.2 bits (83), Expect = 2e-04 Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 186 KAELNPDNVKQEAQATQEDAQNTAKQSAQNPQQADEQLGGLMDRIKA--KGDQAWDAADR 243 E +N KQE++ +++ Q+ + +AQN + A E + + + + Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 244 QALVNLIKARGNKTDAEANQIVDQAQASYRQAYAKYQELKAQAEQKAREAA 294 Q A K + + + + ++ +++ Q E A Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.0 bits (75), Expect = 2e-04 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 9/87 (10%) Query: 52 CLIALEDGELLGGAALASDDLAERPNLRPWLGCVLVKPEARGRGVAVLLIDGICSHARSV 111 + + +G + S+ N + + V + R +GV L+ A+ Sbjct: 67 AFLYYLENNCIGRIKIRSN-----WNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKEN 121 Query: 112 GITTLYLHTHDQH----RFYAKRGWSV 134 L L T D + FYAK + + Sbjct: 122 HFCGLMLETQDINISACHFYAKHHFII 148
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 49.6 bits (118), Expect = 6e-08 Identities = 26/87 (29%), Positives = 50/87 (57%) Query: 8 ASTARGTPPEAFDPALLGEEIARQMRLPPESLTQNASLLKLGMDSMHLMAWLNRFRRMGF 67 ++A F + ++IA ++ PE +T LL G+DS+ +M + ++RR G Sbjct: 219 KTSANTGKKNVFTCENIRKQIAELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGA 278 Query: 68 KVTLRDLYDQPTLQGWQQLLGSVAVQI 94 +VT +L ++PT++ WQ+LL + + Q+ Sbjct: 279 EVTFVELAERPTIEEWQKLLTTRSQQV 305
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.4 bits (73), Expect = 0.002 Identities = 12/24 (50%), Positives = 14/24 (58%) Query: 39 CLVLSGQSGAGKSTLLRTLYGNYL 62 +VL G G GKSTL+ TL G Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDF 621
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.4 bits (97), Expect = 5e-06 Identities = 77/398 (19%), Positives = 138/398 (34%), Gaps = 61/398 (15%) Query: 16 FWACFGGWSLDALEVQMFGLAIPALIAAFALTKGDAGLISAVTLVTSALGGWVGGTLSDR 75 W C + L + +++P + F ++ ++T ++G V G LSD+ Sbjct: 17 IWLCILSF-FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 76 YGRVRTLQWMILWFSFFTFLSAFVTGFNQLLII-KALQGFGIGGEWAAGAVLMAETIQSR 134 G R L + I+ F + + F LLI+ + +QG G A V++A I Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 135 YRGKVMATVQSAWAVGWGLA------------------------VVLFTLIYSFVPE--- 167 RGK + S A+G G+ + + L+ E Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRI 195 Query: 168 ----DIAWRVMFFVGLLPALMIIWVRRNVEEPDSFQRMQKNAAPKGNFFKSMAGIFRP-- 221 DI ++ VG++ +++ S + + F K + + P Sbjct: 196 KGHFDIKGIILMSVGIV--FFMLFTTSY-----SISFLIVSVLSFLIFVKHIRKVTDPFV 248 Query: 222 --ELL--RVTLLGGLLGLGAHGGYHAVMTWLPTFLKTERNLSVLSSG------GYLAVII 271 L ++G L G G ++ +P +K LS G G ++VII Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308 Query: 272 VAFWCGCVCSGLLIDRIGRRKNIMLFALCCVVTVQCYLMLPLSNTQMLFLG--FPLGFFA 329 + G+L+DR G + + V+ L + + + + F LG + Sbjct: 309 FGY-----IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLS 363 Query: 330 AGIPASLGSFFNELYPADVRGAGVGFCYNFGRVLSAVF 367 + L + GAG+ NF LS Sbjct: 364 FTKTVISTIVSSSLKQQEA-GAGMSL-LNFTSFLSEGT 399
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 29.8 bits (67), Expect = 0.006 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 21/116 (18%) Query: 17 TDLPLDYLAQVNVET--PNRPLVIFIHGYGSNAADLFGLKEHLPADYNYLSVQAPVELRA 74 T LP++ QVN + PLVIF+ G G A L + + PV + Sbjct: 32 TLLPVEPSTQVNAASSHTKPPLVIFLSGDGGWA----TLDKAVGGILQQQGW--PV-VGW 84 Query: 75 DSYKWFTQKPGVPDYDGVTEDLKSSGKQLSAFITQATGKFHTQPGKVFLVGFSQGA 130 S K++ ++ +D K + A I + +F TQ KV L+G+S GA Sbjct: 85 SSLKYYWKQ----------KDPKDVTQDTLAIIDKYQAEFGTQ--KVILIGYSFGA 128
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 239 bits (610), Expect = 5e-71 Identities = 119/524 (22%), Positives = 220/524 (41%), Gaps = 38/524 (7%) Query: 250 GMSVGVFGLQRASVGELMPELQKMFGPESGMPLAGMVRFLPIERTNSVVAISSQPEYLRE 309 + V L + +L P L+++ AG+ + E +N ++ ++ + ++ Sbjct: 126 EVVTRVVPLTNVAARDLAPLLRQL------NDNAGVGSVVHYEPSNVLL-MTGRAAVIKR 178 Query: 310 VGEWIHTIDEGGGNEPQMYVYDVRNMKATDLAKYLRQIYGS---GAIKEDSAAKVAPGLR 366 + + +D G + + A D+ K + ++ A+ A V R Sbjct: 179 LLTIVERVDNAGDRS--VVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADER 236 Query: 367 TTTLSSLNSNSGSGVGGMSSSSGLGSSGGGMSNGGGFGNSQGMNNSQNSGDSESEGDDQS 426 T N+ G +S + + + +QG +++ + Sbjct: 237 T--------NAVLVSGEPNSRQRIIAMIKQLDR---QQATQGNTKVIYLKYAKASDLVEV 285 Query: 427 SSESDSASQEGGGANGNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPL 486 + S Q A +LD + I A +N L+V P ++E I +LD Sbjct: 286 LTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP 345 Query: 487 QVQIETRILEVSLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTG--------- 537 QV +E I EV L++G+QW T + + GA Sbjct: 346 QVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSL 405 Query: 538 GAALASTDAFFYSFVSNNLQVALRALETNGRTQILSAPSLVVMNNQQAQIQVGDNIPISQ 597 +AL+S + F N + L AL ++ + IL+ PS+V ++N +A VG +P+ Sbjct: 406 ASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLT 465 Query: 598 TSINTNTSTNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGN 657 S TS + ++VE G+ L V P+IN G V ++I+Q+VSS ++++ ++ Sbjct: 466 GS--QTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLG 523 Query: 658 PRISTRSVATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRT 717 +TR+V V SG+TV++GGL+ + ++T + VP LG IP + LF +TSK + Sbjct: 524 ATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKR 583 Query: 718 ELIVLITPRVITSSSQARQVTDD----YRQQMQLIKPEVSRTSM 757 L++ I P VI + RQ + + + + + +M Sbjct: 584 NLMLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKENNDAM 627 Score = 103 bits (257), Expect = 7e-25 Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 12/289 (4%) Query: 77 AAAPAARPAETGDIVFNFTNQPIQAVINSIMGDLLHENYSIAQGVKGDVSFSTSKPVNKQ 136 AA RPA + +F IQ IN++ +L ++ I V+G ++ + +N++ Sbjct: 17 FAALLFRPAAAEEFSASFKGTDIQEFINTVSKNL-NKTVIIDPSVRGTITVRSYDMLNEE 75 Query: 137 QALSILETLLSWTDNAMIKQGNRYVILPSNQAVAGKLVPEMPVAQPSPG--MSARLFPLR 194 Q ++L A+I N + + ++ VP A P G + R+ PL Sbjct: 76 QYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLT 135 Query: 195 YISASEMQKLLKPFARENAFLLV--DPARNVLSLAGTPEELANYQDTIDTFDVDWLKGMS 252 ++A ++ LL+ V NVL + G + + VD S Sbjct: 136 NVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIV--ERVDNAGDRS 193 Query: 253 VGVFGLQRASVGELMPELQKMFGPESG--MPLAGMVRFLPIERTNSVVAISSQPEYLREV 310 V L AS +++ + ++ S +P + + + ERTN+V+ +S +P + + Sbjct: 194 VVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVL-VSGEPNSRQRI 252 Query: 311 GEWIHTIDEGGGNEPQMYVYDVRNMKATDLAKYLRQIYGSGAIKEDSAA 359 I +D + V ++ KA+DL + L I S ++ + A Sbjct: 253 IAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGI--SSTMQSEKQA 299
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 27.4 bits (60), Expect = 0.040 Identities = 17/51 (33%), Positives = 23/51 (45%) Query: 13 LALAALLAGLIGLIFSGAAHSPDWLPEQAPRNPIDQKAQTQNAPSATLDSL 63 +++ A+ AGL GL +G A + PE D A SAT D L Sbjct: 236 VSVGAIAAGLAGLAATGIAQALALTPEPDDPTTTDPDQAANAAESATKDQL 286
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 1e-20 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGLE 61 +L+ +D + L AL R GY V ++ A DL+V D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRI-QALLRRSH 120 +L + + PVL+++A+ ++ I+ + GA DYL KPF EL I +AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GLANQPTLESAGLNL 135 + G+ L Sbjct: 125 RPSKLEDDSQDGMPL 139
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 29.6 bits (66), Expect = 0.002 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 12/80 (15%) Query: 28 QEVLRLSNAGTLQSAEK-----LDANALSKHPGASILDTQFKNIY-----GRYVYNVELR 77 + L+ A ++Q AE + + P A IY R Y V +R Sbjct: 129 KRTLKTEAAISIQQAEMIAKQDVADRVTKERPAAEEGKPTRLVIYPDEETPRLAYEVNVR 188 Query: 78 --DKHDIEWVLEIDAATGQV 95 W+ IDAA G+V Sbjct: 189 FLTPVPGNWIYMIDAADGKV 208
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 66.6 bits (162), Expect = 2e-15 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 3/134 (2%) Query: 4 SETVERILDAAEQLFAEKGFAETSLRLITSKASVNLAAVNYHFGSKKALIQAVFSRFLGP 63 ET + ILD A +LF+++G + TSL I A V A+ +HF K L ++ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 64 FCISLDRELERRQAKPEHKPSLEELLEILVEQALVVQPRSGNDLSIFMRLLGLA-FSQSQ 122 + P L E+L ++E + + R IF + + + Q Sbjct: 70 IGELELEYQAKFPGDPL--SVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 123 GHLRRYLEDMYGKV 136 R + Y ++ Sbjct: 128 QAQRNLCLESYDRI 141
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.1 bits (125), Expect = 9e-10 Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 7/158 (4%) Query: 78 IDQDRFRLALRQAQA-TVAERQETWEQARRENKRNRGLGNLVAREQLEESQSREARALSA 136 ++Q+ + ++ ++ + + + + L E L+ + R+ Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILD--KLRQTTDNIG 312 Query: 137 LGESKVAVDAAQLNLDRSVIRSPVDGYLNDRAPRDH-EFVTAGRPVLSVV-DAASFHIDG 194 L ++A + SVIR+PV + VT ++ +V + + + Sbjct: 313 LLTLELA--KNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 195 YFEETKLDGIHVGQGVDIRVIGDNARLTGHVVSIVAGI 232 + + I+VGQ I+V G++V V I Sbjct: 371 LVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNI 408 Score = 47.5 bits (113), Expect = 3e-08 Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 7/109 (6%) Query: 50 IAPDVSGLIQKVDVTDNQPVHKGQVLFTIDQDRFRLALRQAQATVAERQETWEQARRENK 109 I P + +++++ V + + V KG VL + + Q+++ QAR E Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLL-------QARLEQT 151 Query: 110 RNRGLGNLVAREQLEESQSREARALSALGESKVAVDAAQLNLDRSVIRS 158 R + L + +L E + + + E +V + + S ++ Sbjct: 152 RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQN 200
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 29.1 bits (65), Expect = 0.023 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%) Query: 1 MNKLFAASLLAAGLAFASAAQAAP 24 M K A ++ A FA+ AQAAP Sbjct: 1 MKKT-AIAIAVALAGFATVAQAAP 23
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 65.6 bits (160), Expect = 4e-16 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 4 PDHVPRQAIALSYDGQ--QAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARM 60 P H+ AI + Y P ++ K D + + IA E VPI + L + L Sbjct: 264 PTHI---AIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDA 320 Query: 61 ELGDSIPEPLYRTIAEIIAF 80 + IP AE++ + Sbjct: 321 LVDHYIPAEQIEATAEVLRW 340
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 35.1 bits (81), Expect = 4e-04 Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 44/191 (23%) Query: 37 RLRPHVKTSKCLPVIQAQIAAGASGVTVSTLKEAEHCFAEGINDVFYAVAIAPGKLDQAL 96 +R ++ V++A A G + + A FA + L++A+ Sbjct: 20 IVRQAATHARVWSVVKAN-AYGHGIERIWSAIGATDGFA---------LLN----LEEAI 65 Query: 97 KLRRNGCRLSIL--------TDSVVAAQA---IVAFGQRHDENF---------DVWIEID 136 LR G + IL D + Q + D++++++ Sbjct: 66 TLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKVN 125 Query: 137 CDGHRSGLTIDDPSLVEVARTL-IEGGMHLRGVMTHAGSSYDLDTPEALQALAEQ----- 190 +R G D ++ V + L + +M+H + D A EQ Sbjct: 126 SGMNRLGFQPDR--VLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQAAEGL 183 Query: 191 --ERRLCVSAA 199 R L SAA Sbjct: 184 ECRRSLSNSAA 194
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.002 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Query: 116 LCISYNFTPYVQYGLV--DLYYELYRD 140 L ++Y TPY + LV D+ Y+++RD Sbjct: 13 LTVAYALTPYTEAALVRDDVDYQIFRD 39
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 264 bits (676), Expect = 2e-78 Identities = 180/625 (28%), Positives = 267/625 (42%), Gaps = 77/625 (12%) Query: 216 GIHLVDGSQAGILVGNKSVAVIDRSIVQGLAGAAIKVNQRATFDIEADIAVQNHSELWAG 275 G V G+ V SV + + GAAI+V + A + H + Sbjct: 287 GFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARVTVSGGSLSAPHGNVIET 346 Query: 276 NGNLLEVEDHSTVNFNV-DNSTLNGN--LVADDTSTLNITLQNGAQLNGDIVNGN----- 327 G + ++ + + G L + +TL GA GDIV Sbjct: 347 GGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIP 406 Query: 328 -------RLAITSGSHWQ-----------------MQGDNAVRSLSLHG-GRVSFVGEG- 361 +A+ S + W M ++ V +L L G V F Sbjct: 407 GTSIGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSVDFQQPAE 466 Query: 362 ---FHTLSLTELSGGGTFGLRVDLDNGVGDLIDVNGQASGQFGLRVRNTGVEVVSADMAP 418 F L++ L+G G F + V D G+ D + V ASGQ L VRN+G E SA+ Sbjct: 467 AGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGSEPASAN-TL 525 Query: 419 LKVVHTEGGDAQFSL--LGGRVDLGAYSYLLEQQGN-DWFIVGKDKVISPSTQ------- 468 L V G A F+L G+VD+G Y Y L GN W +VG +P Sbjct: 526 LLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQP 585 Query: 469 -----------------------SALALYSA-----APAIWMSELSTLRSRMGEVRASGR 500 +A A + A +W +E + L R+GE+R + Sbjct: 586 PQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGELRLNPD 645 Query: 501 AGG-WMRAYGNRLNATTSDGVDYRQKQNGLSLGADAPVEVSSGQLVLGVLGGYSTSGIDL 559 AGG W R + R G + QK G LGAD V V+ G+ LG L GY+ Sbjct: 646 AGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVAGGRWHLGGLAGYTRGDRGF 705 Query: 560 SRGTTGKVDSYYAGAYATWLSDDGYYVDGVLKLNRFRNKADVAMSDASKAKGDYTNNGVG 619 + G DS + G YAT+++D G+Y+D L+ +R N VA SD KG Y +GVG Sbjct: 706 TGDGGGHTDSVHVGGYATYIADSGFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVG 765 Query: 620 GWVEFGRHIKLADDYFLEPFAQLSSVVVQGQELRLDNGMKAKNDHTQSVLGKVGTSLGRS 679 +E GR AD +FLEP A+L+ G R NG++ +++ SVLG++G +G+ Sbjct: 766 ASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKR 825 Query: 680 VALKDGGVLQPYVRVAIAQEFSRHNEVKANDVKFDNSLFGSRGELGAGVSVSLSERLKLH 739 + L G +QPY++ ++ QEF V N + L G+R ELG G++ +L L+ Sbjct: 826 IELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELGLGMAAALGRGHSLY 885 Query: 740 ADFDYMKGRHIEQPWGANVGLRLAF 764 A ++Y KG + PW + G R ++ Sbjct: 886 ASYEYSKGPKLAMPWTFHAGYRYSW 910
>INTIMIN#Intimin signature. Length = 939 Score = 46.2 bits (109), Expect = 3e-07 Identities = 71/347 (20%), Positives = 124/347 (35%), Gaps = 38/347 (10%) Query: 208 PVYYTITDLAGNLSMASEAVD----VKLQLAQATPLPTPTIKEAAGNTLDPANAPSGATV 263 PV + I LS S + + L P + A T NA A + Sbjct: 595 PVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMT-SALNAN--AVI 651 Query: 264 VIDATA----NLKAGDQVIVQWQGPNGNDTREKTLTGADAGKTL---EVVFAAAL----- 311 +D T +KA V NG D T+ K + EV F L Sbjct: 652 FVDQTKASITEIKADKTTAVA----NGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSN 707 Query: 312 --VTANAGQTVAVSYVVNRVNGLVQVSDTLA-LQILMGQPELVLDTSPVTLAGKVYLL-P 367 + V+ G VS ++ + + + PE+ T+ G + ++ Sbjct: 708 STEKTDTNGYAKVTLTSTTP-GKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGT 766 Query: 368 GLPELLP-NFPADTTLQRQASGGQAPYQYTSSNLLVAKVDSN-GLASVRGNGTATITATD 425 G+ LP + + +ASGG Y + S+N +A VD++ G +++ GT TI+ Sbjct: 767 GVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVIS 826 Query: 426 ASGASKSYLITVVGVIHCIGLGS-GSFSQISKNAGNNGARIPTIHELVEIYNLYGNRWPM 484 + + +Y I + + +++ N G ++P+ +E N++ W Sbjct: 827 SDNQTATYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGKLPSSQNELE--NVF-KAW-- 881 Query: 485 GNGNYWSSTVSSAGIGGWNWYYVKNMVSG--GNFKLKSHNSSLGVGI 529 G N + SS I W ++ SG + L N + Sbjct: 882 GAANKYEYYKSSQTIISWVQQTAQDAKSGVASTYDLVKQNPLNNIKA 928
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 316 bits (812), Expect = e-108 Identities = 94/351 (26%), Positives = 177/351 (50%), Gaps = 4/351 (1%) Query: 9 DKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSGIAQMMSELMRDNFTI 68 +KTE PT KK++D+R GQ+A+SKE+ + +++ + L+ + S+LM Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLML---IP 60 Query: 69 SRETLMDQSYMGKALLSSGL-HALVVMLPFLIAMLVAALVGPIMLGGWLFATKSLMPKFS 127 + ++ + S ++ + L + P L + A+ ++ G+L + +++ P Sbjct: 61 AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 128 RMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIAHEPLEQAMIHS 187 ++NP G KR+FS +LVE LKS K +++ + +++ L+ + +E Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 188 LLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSPEVKQRIRQ 247 ++ G + I+ AD F Y+ K+L M+K E++ E+K EGSPE+K + RQ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 248 LQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVALKIREIGA 307 +E+ R M ++ + V++ NPTH A+ + Y + P++ K TD +R+I Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 308 HNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIRQFRAGQ 358 + IL+ LAR++Y+ +D IPA A A+VL ++ + + Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHS 351
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 139 bits (352), Expect = 2e-42 Identities = 99/256 (38%), Positives = 151/256 (58%), Gaps = 2/256 (0%) Query: 1 MLALTDIQISTWVASFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPA 60 ML +T Q +W+ + P+ R++AL+ T P++ VP+RV+L LA IT +AP+LPA Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 MPPVQALDLSGLLLIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNG 120 L L +QI+IG +G ++Q F AG+II QMG+ FA+ VDP + Sbjct: 61 NDVPV-FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 VSSAVIGQFFTMLVTLLFLFMNGHLVVLEVLVESFTTMPVGGGLLVNNFWELANGLGWAL 180 ++ V+ + ML LLFL NGHL ++ +LV++F T+P+GG L +N + G + Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 181 -SSGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMSMGDILNQ 239 +GL L LP IT LL +N+A G++ R APQL+IF IGFPLTL +G+ ++ M I Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 Query: 240 YQPIASQALQSLRDMV 255 + + S+ L D++ Sbjct: 240 CEHLFSEIFNLLADII 255
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 49.4 bits (118), Expect = 1e-11 Identities = 23/74 (31%), Positives = 40/74 (54%) Query: 7 VDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLVTLIVIG 66 V +AL+L +L + + + GLLV +FQ TQ+ EQTL F +LL + + L ++ Sbjct: 5 VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64 Query: 67 PWLLKIFMEYMLSL 80 W ++ + Y + Sbjct: 65 GWYGEVLLSYGRQV 78
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 261 bits (668), Expect = 2e-90 Identities = 139/247 (56%), Positives = 180/247 (72%), Gaps = 4/247 (1%) Query: 1 MGALRFVILLLLVMVTPAVLAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPA 60 M L V +LL ++TP A +P IT G Q +S+ +Q L+ +T+L+FIPA Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQ----LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPA 56 Query: 61 FVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPY 120 +++MTSFTRIIIVF +LR ALG P NQ+L G+ALFLT FIM+PV D++ DA QP+ Sbjct: 57 ILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPF 116 Query: 121 LAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKRTDIPTPDAAPLTILVPAFVI 180 EK+S Q+A+ K P+++FML QTR +DL LF RL+ + P+A P+ IL+PA+V Sbjct: 117 SEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVT 176 Query: 181 SELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIV 240 SELKTAFQIGF IFIPFLIIDLV+ASVLMA+GMMM+ P I+LPFK+MLFVLVDGW L+V Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 241 GTLAGSF 247 G+LA SF Sbjct: 237 GSLAQSF 243
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 121 bits (304), Expect = 3e-38 Identities = 66/151 (43%), Positives = 95/151 (62%), Gaps = 16/151 (10%) Query: 1 MADENDMTSAEDQALADEWAAALGEAGDSQADIDALLAADAGNSGSRMTMEEFGSVPKST 60 M+D N+ + AL D WA AL E A S + ++ G Sbjct: 1 MSDMNNPSDENTGALDDLWADALNEQ-----------KATTTKSAADAVFQQLGG----- 44 Query: 61 GPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGT 120 G VS ++D+I+DIPV +++E+G T + I+ LL+L QGSV+ LD LAGEPLD+L+NG Sbjct: 45 GDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104 Query: 121 LIAHGEVVVVNEKFGIRLTDVISPSERIKKL 151 LIA GEVVVV +K+G+R+TD+I+PSER+++L Sbjct: 105 LIAQGEVVVVADKYGVRITDIITPSERMRRL 135
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 250 bits (640), Expect = 9e-84 Identities = 93/323 (28%), Positives = 166/323 (51%), Gaps = 9/323 (2%) Query: 5 DLLSQDEIDALLHGVDDG---MVQTDTVSEPGSVKSYDLTSQDRIVRGRMPTLEMINERF 61 ++LSQDEID LL + G + +S+ + YD D+ + +M TL +++E F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 62 ARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAK 121 AR T S+ LR V V V + + E++ S+ P++L + + PL+G A+ +D Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 122 LVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEVNFEYINS 181 + F ++D FGG G+ AK++ R+ T E V+ V+ + +++E+W ++++ Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ-RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQI 181 Query: 182 EVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGF--QSDLDD 239 E NP A IV PSE VV+ T ++ G ++ +PY IEPI L + F S Sbjct: 182 ETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRS 241 Query: 240 QDERWINALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVE---LSESLVMRANG 296 +++ L++ + V++ + + +L +RDIL +R GD+I + + + V+ Sbjct: 242 STTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGN 301 Query: 297 VPSFKVKLGSHKGKMALQVIEPI 319 F + G K+A Q++E I Sbjct: 302 RKKFLCQPGVVGKKIAAQILERI 324
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 502 bits (1295), Expect = e-178 Identities = 182/494 (36%), Positives = 254/494 (51%), Gaps = 22/494 (4%) Query: 5 IKILLIDDDSQRRRDLAVILNFLGEENLSCSSQDWQQVVGSLASPREVLC-----VLVGS 59 IL+ DDD+ R L L+ G + + A+ + ++V Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRI---------TSNAATLWRWIAAGDGDLVVTD 54 Query: 60 VNAPG-SLQGLLKTIAAWDEFLPVLLMSENSSVELP-EDLRRRVLSALEMPPSYSKLLDS 117 V P + LL I LPVL+MS ++ + + L P ++L+ Sbjct: 55 VVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 118 LHRAQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESG 177 + RA + R + LVG S A+Q + +++ ++ TD +++I GESG Sbjct: 115 IGRALAEP----KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESG 170 Query: 178 TGKEVVARNLHYHSKRRDAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELA 237 TGKE+VAR LH + KRR+ PFV +N AIP +L+ESELFGHEKGAFTGA T GRFE A Sbjct: 171 TGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQA 230 Query: 238 NGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLENMIELG 297 GGTLFLDEIGDMP+ Q +LLRVLQ+ + VG DVRI+AAT+K+L+ I G Sbjct: 231 EGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQG 290 Query: 298 SFREDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHA 357 FREDLYYRLNV P+ + PLR+R EDIP L+ + + E E RF+ A+ + H Sbjct: 291 LFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHP 350 Query: 358 WAGNVRELANLVERMAIMHPYGVIGVAELPKKFRY-VDDEDEQMVDSMRSDIEERVAINS 416 W GNVREL NLV R+ ++P VI + + R + D + + + A+ Sbjct: 351 WPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEE 410 Query: 417 NTPN-FASGAMLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKM 475 N FAS P L +E LI AL G +AA+ L + R TL +K+ Sbjct: 411 NMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKI 470 Query: 476 RKYGMSRREGDEQA 489 R+ G+S A Sbjct: 471 RELGVSVYRSSRSA 484
>FLAGELLIN#Flagellin signature. Length = 507 Score = 117 bits (295), Expect = 3e-32 Identities = 89/272 (32%), Positives = 127/272 (46%), Gaps = 3/272 (1%) Query: 2 ALTVNTNVASLNVQKNLGRASDALSTSMTRLSSGLKINSAKDDAAGLQIATKITSQIRGQ 61 A +NTN SL Q NL ++ +LS+++ RLSSGL+INSAKDDAAG IA + TS I+G Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 TMAIKNANDGMSLAQTAEGALQESTNILQRMRELAVQSRNDSNSSTDRDALNKEFTAMSS 121 T A +NANDG+S+AQT EGAL E N LQR+REL+VQ+ N +NS +D ++ E Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELTRIAQSTNLNGKNLLDGSASTMTFQVGSNSGASNQITLTLSASFDANTLGVGSAVTIA 181 E+ R++ T NG +L M QVG+N G + I L G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQ-MKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 GSDSTTAETNFSAAIAAIDSALQTINSTRADLGAAQNRLTSTISNLQNINENASAALGRV 241 + + + D+ N R D+ + +T + + +A Sbjct: 180 ATVGDLKSSF--KNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLT 237 Query: 242 QDTDFAAETAQLTKQQTLQQASTSVLAQANQL 273 D L K + A A + Sbjct: 238 TDDAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269 Score = 74.3 bits (182), Expect = 4e-17 Identities = 52/142 (36%), Positives = 79/142 (55%) Query: 141 SASTMTFQVGSNSGASNQITLTLSASFDANTLGVGSAVTIAGSDSTTAETNFSAAIAAID 200 S +T + + +TL+ T+ D+ A+ + + +A+ID Sbjct: 366 GESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASID 425 Query: 201 SALQTINSTRADLGAAQNRLTSTISNLQNINENASAALGRVQDTDFAAETAQLTKQQTLQ 260 SAL +++ R+ LGA QNR S I+NL N N ++A R++D D+A E + ++K Q LQ Sbjct: 426 SALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQ 485 Query: 261 QASTSVLAQANQLPSAVLKLLQ 282 QA TSVLAQANQ+P VL LL+ Sbjct: 486 QAGTSVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 63.1 bits (153), Expect = 1e-12 Identities = 70/455 (15%), Positives = 141/455 (30%), Gaps = 6/455 (1%) Query: 1 MRISTTQFYESTNTNYQRTYSNVLKTSEEVSSGIKLNTASDDPVGAARVLQLAQQNSMLT 60 I+T T N ++ S++ E +SSG+++N+A DD G A + LT Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 QYASNIGTINTNIVNSETALTSIVDTMQTAREVIVSAGNGAYTDSDRLAKAAELKQYQSQ 120 Q + N + +E AL I + +Q RE+ V A NG +DSD + E++Q + Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 LLGLMNSQDSNGQYIFAGSKSSAPPYAQNADGTYSYSGDQTSVNLAIGDGLVLPSNTTGY 180 + + N NG + + N T + + V DG + Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE-- 179 Query: 181 EAFEQAVNTTRTSSTLLSPATDDGKVGLTGGQVTSTSAYNSGYQAGEPYTMTFLSGTQFK 240 A + ++ + T + + + + +G Sbjct: 180 -ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTT 238 Query: 241 ITDASGTDVTTDASTAGKFSYGSFADQTFTFRGVELTMNINLSAAESATPATAATALTNR 300 + T V +T +G + + + Sbjct: 239 DDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK 298 Query: 301 SYELASTPDTVSASRSPGNTSAATISSSAVGNTTADRTAFNNTFPPNGAILKFTSATAYD 360 + +A +++ + + N F + ++ + Sbjct: 299 VSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLS-- 356 Query: 361 LYASPVTSSSKPVSSGTLTGSTANASGVNFTVSGTPAAGDQFVVESGTHQTENILNTLTA 420 + + + TANA+G T++G D+ T E+ + Sbjct: 357 DLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKS 416 Query: 421 AIKALSTPTDGNLVASQKLDAALGSALGNIASSID 455 L++ D L + ++LG+ S+I Sbjct: 417 TANPLAS-IDSALSKVDAVRSSLGAIQNRFDSAIT 450
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 194 bits (495), Expect = 2e-56 Identities = 138/447 (30%), Positives = 229/447 (51%), Gaps = 17/447 (3%) Query: 2 SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVMTTASAQINIGLGVGYIGTGTTL 61 SLI+ +SG+NA+ AA+NT NN ++ + AGY+RQ + + G++G G + Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTT--IMAQANSTLGAGGWVGNGVYV 59 Query: 62 SDVRRIYNSYLDAQLQTSTALSADAVAYSGQASKTDTLLSDSATGVSTQLADFFTKMQGI 121 S V+R Y++++ QL+ + S+ A Q SK D +LS S + ++TQ+ DFFT +Q + Sbjct: 60 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL 119 Query: 122 ATNATQSSDRSAFLTQASALSSRFNSVASQLSSQNDNVNAQLTTFTKQVNELTTTLASLN 181 +NA + R A + ++ L ++F + L Q+ VN + Q+N +ASLN Sbjct: 120 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 179 Query: 182 KQI--TQAGAGNTTPNSLLDSRNETVRQLNGLVGVKV-IENNGNYDIYTGTGQSLVSGGT 238 QI +PN+LLD R++ V +LN +VGV+V +++ G Y+I G SLV G T Sbjct: 180 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST 239 Query: 239 SYTMSATPSPADPLQYNVQIAYGQTKTDVT--SVISGGSIGGLLRYRSDVLVPATNELGR 296 + ++A PS ADP + V G +++ GS+GG+L +RS L N LG+ Sbjct: 240 ARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQ 299 Query: 297 AAMVLADQVNSQMSQGIDSKGNFGSSLYSNINSADAISQRSTGKTTNSAGSGNLDVTIGD 356 A+ A+ N+Q G D+ G+ G ++ I + + + T + G + T+ D Sbjct: 300 LALAFAEAFNTQHKAGFDANGDAGEDFFA-------IGKPAVLQNTKNKGDVAIGATVTD 352 Query: 357 TSKLTADDYEVTFSDASNFTVRRLPNGESVGTGALTDNPPKQFDGFSVSLNGNALAAGDV 416 S + A DY+++F D + + V R + T N FDG ++ A D Sbjct: 353 ASAVLATDYKISF-DNNQWQVTR-LASNTTFTVTPDANGKVAFDGLELTF-TGTPAVNDS 409 Query: 417 FKVTPTRNGASGISVVLTDPKDIAAAA 443 F + P + + V++TD IA A+ Sbjct: 410 FTLKPVSDAIVNMDVLITDEAKIAMAS 436 Score = 72.7 bits (178), Expect = 2e-15 Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 11/148 (7%) Query: 544 TTTPAGKTAFEVQMTLSGSPLVN----DTFSIGLTG---AGSSDNRNALAVVGLQTAKTV 596 T TPA +F ++ ++ D I + AG SDNRN A++ LQ+ Sbjct: 401 TGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKT 460 Query: 597 GVTNGGVGTSLSGAYADLVSVVGTLAGQGKSDVTASAAVVAQAKSARDSVSGVSLDEEAA 656 S + AYA LVS +G K+ VV Q + + S+SGV+LDEE Sbjct: 461 VGGA----KSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYG 516 Query: 657 NLIKYQQYYTASSQIIKAAQTIFSTLIN 684 NL ++QQYY A++Q+++ A IF LIN Sbjct: 517 NLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 127 bits (320), Expect = 1e-35 Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 1/150 (0%) Query: 251 NADQFVETMLPLAKEAAARIGVDPVMLVAQAALETGWGKSIMRQQDGSSSHNLFGIKAAG 310 ++ F+ + A+ A+ + GV +++AQAALE+GWG+ +R+++G S+NLFG+KA+G Sbjct: 148 DSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASG 207 Query: 311 SWKGAEARAITSEFRDGKMVKETADFRSYDSYADSFHDLVSLLQNNNRYKEVVNSADKPE 370 +WKG T+E+ +G+ K A FR Y SY ++ D V LL N RY V +A E Sbjct: 208 NWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASA-E 266 Query: 371 QFVKELQKAGYATDPDYASKISQIAKQMKS 400 Q + LQ AGYATDP YA K++ + +QMKS Sbjct: 267 QGAQALQDAGYATDPHYARKLTNMIQQMKS 296 Score = 60.9 bits (147), Expect = 2e-12 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 21/161 (13%) Query: 31 KDSVANQKKVAQEFESLFVSQMLKAMRSANEVLAKDNPMNTPATRQYQDMYDQQLAVTLS 90 +D AN + VA++ E +FV MLK+MR A KD ++ TR Y MYDQQ+A ++ Sbjct: 27 EDPAANIRPVARQVEGMFVQMMLKSMRDAL---PKDGLFSSEHTRLYTSMYDQQIAQQMT 83 Query: 91 TRGNGIGLQDVLMRQLSKDKGIQHAAPTDTTATPATTTDATPAKTGLATSV-YQRPLWAT 149 G G+GL +++++Q++ ++ P +T A P K L T V YQ + Sbjct: 84 A-GKGLGLAEMMVKQMTPEQ-----------PLPEESTPAAPMKFPLETVVRYQNQALSQ 131 Query: 150 RSAAADQAAAAVSASGDGRNDMAALNSRRLSLPTKLTDRLL 190 A S GD + +A +LSLP +L + Sbjct: 132 LVQKAVPRNYDDSLPGDSKAFLA-----QLSLPAQLASQQS 167
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 430 bits (1108), Expect = e-153 Identities = 162/366 (44%), Positives = 217/366 (59%), Gaps = 10/366 (2%) Query: 7 LIAATLLLSTAFGVHAERLKDIASISGVRANQLIGYGLVVGLNGTGDQTTQTPFTLQTFN 66 A L + R+KDIAS+ R NQLIGYGLVVGL GTGD +PFT Q+ Sbjct: 13 FSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMR 72 Query: 67 NMLSQFGIKVPSGSGTVQLKNVAAVAVYADLPAFAKPGQTVDITVSSIGNSKSLRGGALL 126 ML GI G KN+AAV V A+LP FA PG VD+TVSS+G++ SLRGG L+ Sbjct: 73 AMLQNLGITTQGGQS--NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLI 130 Query: 127 MTPMKGVDGNVYAIAQGNLVVGGFDAEGRDGSKITVNVPSSGRIPGGASVERSVPSGFNQ 186 MT + G DG +YA+AQG L+V GF A+G D + +T V +S R+P GA +ER +PS F Sbjct: 131 MTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFKD 189 Query: 187 GNTLTLNLNRSDFTTAKRIVDKINEL----LGPGVAQALDGGSVRVTAPLDPGQRVDYLS 242 L L L DF+TA R+ D +N G +A+ D + V P ++ Sbjct: 190 SVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKP-RVADLTRLMA 248 Query: 243 ILENLEVDPGQTAAKVIINSRTGTIVIGQNVKVSPAAVTHGSLTVTITEDPIVSQPGALS 302 +ENL V+ T AKV+IN RTGTIVIG +V++S AV++G+LTV +TE P V QP S Sbjct: 249 EIENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFS 307 Query: 303 GGQTAVVPRSRVNAQQELHPMFKFGPGTTLDEIVRAVNQVGAAPGDLMAILEALKQAGAL 362 GQTAV P++ + A QE + G L +V +N +G ++AIL+ +K AGAL Sbjct: 308 RGQTAVQPQTDIMAMQEGSKVA-IVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGAL 366 Query: 363 QADLIV 368 QA+L++ Sbjct: 367 QAELVL 372
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 173 bits (440), Expect = 3e-56 Identities = 76/223 (34%), Positives = 112/223 (50%), Gaps = 13/223 (5%) Query: 19 ITLLSGCVAPTAKPNDPYYAPVLPRTPMSAAANNGAIYQAGF-----EQNLYGDRKAFRI 73 + L+GC + P P + AN G+I+Q+ Q L+ DR+ I Sbjct: 16 VLSLTGCAWIPSTPLVQGATSAQPVPGPTPVAN-GSIFQSAQPINYGYQPLFEDRRPRNI 74 Query: 74 GDIITITLSERMAASKAATSAMTKDSTNSIGLTSLFGSGLTTNNPIGGNDLSLNAGYNGA 133 GD +TI L E ++ASK++++ ++D + G + G + +G Sbjct: 75 GDTLTIVLQENVSASKSSSANASRDGKTNFGFDT---VPRYLQGLFGNARADV--EASGG 129 Query: 134 RTTKGDGKAAQSNSLTGSVTVTVADVLPNGILAVRGEKWMTLNTGDELVRIAGLVRADDI 193 T G G A SN+ +G++TVTV VL NG L V GEK + +N G E +R +G+V I Sbjct: 130 NTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTI 189 Query: 194 ATDNTVSSTRIADARITYSGTGAFADTSQPGWFDRFF--LSPL 234 + NTV ST++ADARI Y G G + GW RFF LSP+ Sbjct: 190 SGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.6 bits (100), Expect = 9e-07 Identities = 12/41 (29%), Positives = 20/41 (48%) Query: 220 LENSNVSTVEELVNMITTQRAYEMNSKVISTADQMLQNLTQ 260 S V+ EE N+ Q+ Y N++V+ TA+ + L Sbjct: 504 QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 39.6 bits (92), Expect = 1e-05 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 14/75 (18%) Query: 5 LYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDSELPS 64 + A +GL A L T SNN+++ + G+ RQ + +S L + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGY--------------TRQTTIMAQANSTLGA 49 Query: 65 GLQLGTGVRIVGTQK 79 G +G GV + G Q+ Sbjct: 50 GGWVGNGVYVSGVQR 64
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 36.1 bits (83), Expect = 4e-04 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Query: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRA----QFSALYSASQLGSG 51 N A+SG++AA L A NNI++ G+ S L + +G+G Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNG 56 Score = 33.4 bits (76), Expect = 0.003 Identities = 12/41 (29%), Positives = 18/41 (43%) Query: 544 LEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQ 584 S V L +E L + Q Y AN++ + T + LI Sbjct: 504 QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.5 bits (97), Expect = 6e-06 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Query: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 N +SGL AA +L+ NNI++ G+ A + VG+GV Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANST----LGAGGWVGNGVY 58 Query: 62 TAAVSQQFSQ 71 + V +++ Sbjct: 59 VSGVQREYDA 68 Score = 36.9 bits (85), Expect = 1e-04 Identities = 15/47 (31%), Positives = 23/47 (48%) Query: 394 ITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQM 440 ++ Q S V+L E NL + Q Y ANA+ + T + I I + Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 34.5 bits (79), Expect = 9e-05 Identities = 8/38 (21%), Positives = 21/38 (55%) Query: 107 NVNVVEEMADMISASRSFQTNAEIMNTAKSMMQKVLTL 144 VN+ EE ++ + + NA+++ TA ++ ++ + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 28.0 bits (62), Expect = 0.013 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 14/72 (19%) Query: 8 NIAGSAMSAQTTRLNTTASNIANAETVSSSMDQTYRARHPVFATVMQGQQSTGGSLFQDQ 67 N A S ++A LNT ++NI++ + T + Q + S Sbjct: 5 NNAMSGLNAAQAALNTASNNISSYNVAGYTRQ-----------TTIMAQAN---STLGAG 50 Query: 68 GEAGQGVQVNGI 79 G G GV V+G+ Sbjct: 51 GWVGNGVYVSGV 62
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 45.4 bits (107), Expect = 3e-08 Identities = 14/66 (21%), Positives = 24/66 (36%) Query: 21 QAAWDIVGEAGMRGLSLRECARRANVSHAAPAHHFGSLENLMAEVVADGYERMVDAIHAA 80 A + + G+ SL E A+ A V+ A HF +L +E+ + + Sbjct: 18 DVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEY 77 Query: 81 QRDLGD 86 Q Sbjct: 78 QAKFPG 83
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 80.9 bits (199), Expect = 4e-20 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 2/185 (1%) Query: 7 VLITGASSGIGAIYAERFARRGHNLVLVARDKPRLDALAARLSEENDVAVEVLQADLTNS 66 ITGA+ GIG A A +G ++ V + +L+ + + L E A E AD+ +S Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA-EAFPADVRDS 69 Query: 67 ADLTTLETRL-RDDARIGVLINNAGIAQSGGFIEQSAEAIEKLVALNIVALTRLAAAVAP 125 A + + R+ R+ I +L+N AG+ + G S E E ++N + + +V+ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 126 RFAQSGTGSIVNLGSVVGLAPELGMTVYGATKAYVLFLSQGLNLELAPKGVYIQAVLPTA 185 +GSIV +GS P M Y ++KA + ++ L LELA + V P + Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 186 TRTEI 190 T T++ Sbjct: 190 TETDM 194
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.7 bits (248), Expect = 5e-27 Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 10/189 (5%) Query: 6 GKTAIVTGASSGIGRATAEALVRSGYTVFGTS-----RKIGESATQVSMRT-----CDVT 55 GK A +TGA+ GIG A A L G + + S+ + R DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 56 DDDSVSALVSSVLAQTGRIDLLVNNAGIGLIGGSEEFSIPQVQALFDVNLFGVIRMTNAV 115 D ++ + + + + G ID+LVN AG+ G S + +A F VN GV + +V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 116 LPSMRERGQGRIINIGSILGLIPAPYSSHYSAVKHALEGYSESLDHEVRAFNIRVSVIEP 175 M +R G I+ +GS +P + Y++ K A +++ L E+ +NIR +++ P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 176 AFVRTVFDQ 184 T Sbjct: 188 GSTETDMQW 196
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 57.7 bits (139), Expect = 1e-12 Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 6 REAILLAARNIAQSQGYNGLNFRDLAAQVGIKPASIYYHFPSKADLGVAVARRYWQDGAA 65 R+ IL A + QG + + ++A G+ +IY+HF K+DL + + Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 66 ALEAISEETPDPVEALHR 83 + P ++ R Sbjct: 73 LELEYQAKFPGDPLSVLR 90
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.048 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 23/147 (15%) Query: 22 EKLIERLLIALLADGHMLVEGAPGLAKT---KAIKELAEGIEAQFHRIQFTPDLLPADIT 78 +++ L + D +++ G G K +A+ + + F I +P D+ Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAA--IPRDLI 204 Query: 79 GTEIYRPETGSFV---------FQQ---GPIFHNLVLADEINRAPAKVQSALLEAMAERQ 126 +E++ E G+F F+Q G +F DEI P Q+ LL + + + Sbjct: 205 ESELFGHEKGAFTGAQTRSTGRFEQAEGGTLF-----LDEIGDMPMDAQTRLLRVLQQGE 259 Query: 127 VS-VGRSTYDLSPLFLVMATQNPIEQE 152 + VG T S + +V AT ++Q Sbjct: 260 YTTVGGRTPIRSDVRIVAATNKDLKQS 286
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 44.3 bits (104), Expect = 3e-06 Identities = 39/298 (13%), Positives = 91/298 (30%), Gaps = 18/298 (6%) Query: 736 KQLQAATEASQTAASHVAEQLKQLDVDRQRLDEELSAFTPLVSPHVLEGLRSDASATVMQ 795 L+ + + +L + E+L S + Sbjct: 67 NTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKL------------RKNDKSLSEKASK 114 Query: 796 LEQQVTQRLDQLEQQHEEQQEQSERQQKIEKQQIEQQTRLHRQTELAQEVARLGEQQQAS 855 +++ ++ D + + KI+ + E+ R+ +L + + A Sbjct: 115 IQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 174 Query: 856 QQALTGLLGEHATAEHWQQALENAIEQARQTESSAAEALQQIQSQLIQLAAELKSAQQQQ 915 + L E A E Q LE A+E A ++ + ++ ++++ LAA ++ Sbjct: 175 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKAL 234 Query: 916 QSLQQELAELDVQISEWRGQHPELDDT--ALDTLLTYDDAHVEQLRLQLNATDKALEQAK 973 + +I + L+ L+ L ++ + + Sbjct: 235 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALE 294 Query: 974 VLLQERDQRLQ----QHQAQHSDLSDSTQLAAALQQAHEQSALGEQQCADLRAELSED 1027 + + + Q Q+ DL S + L+ H++ + R L D Sbjct: 295 AEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD 352 Score = 42.4 bits (99), Expect = 1e-05 Identities = 47/311 (15%), Positives = 113/311 (36%), Gaps = 16/311 (5%) Query: 622 LESLTQHDDNEQASAQKAVDQLTEQRNQLREQVGGVIARQKELLRQHEQLTLRHQALAPD 681 LE+ + A + + L + + AR+ +L + E A + Sbjct: 118 LEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK 177 Query: 682 LESHPLAAQLLDHDPGKRDSWLSQQLNNLSEVITRDEQRQEALLTLHKDAARLQKQLQAA 741 +++ L+ + L + L T D + + L A + L+ A Sbjct: 178 IKTLEAEKAALEARQAE----LEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKA 233 Query: 742 TEASQTAASHVAEQLKQLDVDRQRLDEELSAFTPLVSPHVLEGLRSDASATVMQLEQQVT 801 E + ++ + ++K L+ ++ L+ + + + SA + LE + Sbjct: 234 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL--EGAMNFSTADSAKIKTLEAEK- 290 Query: 802 QRLDQLEQQHEEQQEQSERQQKIEKQQIEQQTRLHRQTELAQEVARLGEQQQASQQALTG 861 L+ + E Q + ++ ++ ++ +Q E E +L EQ + S+ + Sbjct: 291 AALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLE--AEHQKLEEQNKISEASRQS 348 Query: 862 LLGEHATAEHWQQALENAIEQARQTESSAAEALQQIQSQLI-------QLAAELKSAQQQ 914 L + + ++ LE ++ + + + Q ++ L Q+ L+ A + Sbjct: 349 LRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSK 408 Query: 915 QQSLQQELAEL 925 +L++ EL Sbjct: 409 LAALEKLNKEL 419
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.8 bits (67), Expect = 0.020 Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 3/171 (1%) Query: 242 LLLALFYLPVTLSIYGLGLWLPTLIKQFGGSDLTTGFVSSVPYIFGIIG-LLIVPRSSDR 300 L+A+F++ + LW+ +F T G + I + +I + R Sbjct: 214 ALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAAR 273 Query: 301 LNDRYGHLAVLYVLGAIGLFCSAWLTLPVAQLAALCVVAFALFSCTAVFWTLPGRFFAGA 360 L +R L + + G A+ T + ++A A+ L + Sbjct: 274 LGER-RALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEER 332 Query: 361 SAAAGIALINSVGNLGGYIGPFVIGALKEITGSLASGLYFLSGVMVFGLLL 411 +L ++ +L +GP + A+ + + +G +++G ++ L L Sbjct: 333 QGQLQGSLA-ALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCL 382
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 29.4 bits (66), Expect = 0.047 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 21/135 (15%) Query: 415 VFENLEMYKARINDPDL-----DIDATSVMVLKNCGPKGYPGMAEVGNMGLPAKLLAQGV 469 V + +++ + DI S VL + +A + ++A+ + Sbjct: 108 VSDMFVSMFESMDNEYMKERAADIRDVSKRVLGHLIGVETGSLATIAE---ETVIIAEDL 164 Query: 470 T--DMVRISDARMSG--TAYGTVVLHVAPEAAAGGPLAVV---------KEGDWIELDCA 516 T D +++ + G T G H A + + AVV + GD + +D Sbjct: 165 TPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGI 224 Query: 517 GGRLHLDIPEAELAA 531 G + ++ E E+ A Sbjct: 225 EGIVIVNPTEEEVKA 239
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 47.7 bits (113), Expect = 4e-09 Identities = 22/80 (27%), Positives = 35/80 (43%) Query: 6 DHKAQTHQRIVKEASMRFRRDGIGATGLQPLMKALGLTHGGFYAHFKSKDDLVEQALSHA 65 +T Q I+ A F + G+ +T L + KA G+T G Y HFK K DL + + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 66 LDNVKGITSDVFARQDSLSE 85 N+ + + A+ Sbjct: 67 ESNIGELELEYQAKFPGDPL 86
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 70.2 bits (172), Expect = 4e-15 Identities = 55/322 (17%), Positives = 110/322 (34%), Gaps = 66/322 (20%) Query: 299 TVLVTGAGGSIGSELCRQILLLQPTQLLLLDHSEFNLYSILTELEQRAARESLSVKLLPI 358 LVTGA G IG + ++ LL Q++ +D N Y ++ + R + Sbjct: 2 KYLVTGAAGFIGFHVSKR-LLEAGHQVVGID--NLNDYYDVSLKQARLELLAQP-GFQFH 57 Query: 359 LGSVRNHPKLLSIMKTWKVDTVYHAAAYKHVPMVEHNIAEGVINNVVGTLNTAQAALQAG 418 + + + + + + V+ + V N +N+ G LN + Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 419 VSNFVLIST---------------DKAVRPTNVMGSTKRLAELILQALSRETAPVIFGDK 463 + + + S+ D P ++ +TK+ EL+ S ++G Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSH-----LYG-- 170 Query: 464 ANVYQVNKTRFTMVRFGNVLGSSGS---VIPLFHKQIQSGGPLTV-THPKITRYFMTIPE 519 T +RF V G G + F K + G + V + K+ R F I + Sbjct: 171 --------LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDD 222 Query: 520 AAQLVIQA----------GSMGHGGD--------VFVLDMGEPVKIVELAEKMIHLSGLS 561 A+ +I+ ++ G V+ + PV++++ + + Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQAL------- 275 Query: 562 IRSEKNPQGDISIEFTGLRPGE 583 E + L+PG+ Sbjct: 276 ---EDALGIEAKKNMLPLQPGD 294
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 82.5 bits (204), Expect = 5e-20 Identities = 67/361 (18%), Positives = 130/361 (36%), Gaps = 78/361 (21%) Query: 8 VAITGATGFVGSAVVRRLIKHTGHSV-----------------RVAVRGAYSCSSERINV 50 +TGA GF+G V +RL++ GH V R+ + +I++ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEA-GHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 51 VSAESLAPDNQWSDLVTGAHV--VIHCAARVHVLNETADEPDQEYFRANVTATLNLAEQA 108 E + DL H V R+ V + E Y +N+T LN+ E Sbjct: 62 ADREGMT------DLFASGHFERVFISPHRLAV--RYSLENPHAYADSNLTGFLNILEGC 113 Query: 109 AAAGVRRFIFLSSIKANGEFTHPGAPFRADDPCN-PLDAYGVSKQKAEEGLRELSARSGM 167 ++ ++ SS G PF DD + P+ Y +K+ E S G+ Sbjct: 114 RHNKIQHLLYASSSSVYGLNRKM--PFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171 Query: 168 QVVIIRPVLVYGPGVKAN------FKSMMRWLDKGLPLPL-GSINNRRSLVAVDNLADLV 220 +R VYGP + + K+M+ +G + + +R +D++A+ + Sbjct: 172 PATGLRFFTVYGPWGRPDMALFKFTKAML----EGKSIDVYNYGKMKRDFTYIDDIAEAI 227 Query: 221 MVCVDHPAAGDQTFLVSDGDDLST-----------------TRLLREMGKALGKPAR--L 261 + D D + V G ++ ++ + ALG A+ + Sbjct: 228 IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM 287 Query: 262 LPVPAGLLKNAAALLGKKAFSQRLCSSLQVDISKTCTMLDWHPPVSIEHAMQDTARYYLE 321 LP+ G + +A D ++ + P +++ +++ +Y + Sbjct: 288 LPLQPGDVLETSA-----------------DTKALYEVIGFTPETTVKDGVKNFVNWYRD 330 Query: 322 Y 322 + Sbjct: 331 F 331
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 114 bits (288), Expect = 3e-37 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 2 TKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRVG 61 K +LI + V L+ KD A+ + +S LA G+++++ GFG+F + RA R G Sbjct: 3 NKQDLIAK-VAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGRSVSLDGKFVPHFKPGKELRDRV 90 RNP+TG + + VP FK GK L+D V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 28.9 bits (64), Expect = 0.033 Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 22/142 (15%) Query: 128 EVFRKVVAGAVN-----FGVVPVENSTEGAVNHTLDSFLEHDMVICGEVELLIHHHLLVG 182 E V AGA+N + + + G + + + + E + + L Sbjct: 226 EFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAAMRNIAPLPAEGKFAVIGGLGSV 285 Query: 183 ESTKTQSISRIYSHAQSLAQCRKWLDAHYPNV-ERVAVASN-AEAAKRVK----GEWNSA 236 + + + +W+ + PN E V N A AAK K + A Sbjct: 286 AGFEKNTREAV----------DRWIQEN-PNAAETVEAVFNVAAAAKVAKLAKAAKPGKA 334 Query: 237 AIAGDMAAGLYGLTRLAEKIED 258 A++GD A L++ Sbjct: 335 AVSGDFADSYKKKLALSDSARQ 356
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.4 bits (68), Expect = 0.018 Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 11/204 (5%) Query: 4 DLNSLLLGLAAAAVPLLALLWQLQRRLALRQAESTLLDERLSMAQMAQEGLNAQLDACRD 63 + +A L A L R A + + + L A+ A Sbjct: 201 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 260 Query: 64 EVSDLSQANAAKQADLAALRREVELLRQEGDSARETAHAWNHERAGREAELRRLDAQCAA 123 ++L +A A +++ L E + H+ A + L A Sbjct: 261 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDA 320 Query: 124 LNAELREQQDSHQQRLNDLQGSR----------DELRAQFAELAGKIFD-EREQRFAETS 172 ++ + HQ+ + S D R +L + E + + +E S Sbjct: 321 SREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEAS 380 Query: 173 QQQLGQLLTPLKERIQSFEKRVEE 196 +Q L + L +E + EK +EE Sbjct: 381 RQSLRRDLDASREAKKQVEKALEE 404
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 42.9 bits (101), Expect = 1e-06 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 66 GALADRFGAAKVVFVGGVLYAAGLLCMSMADSSLSLSLSAGLLIGIGLSGTSFSVILGVV 125 G L+D+ G +++ G ++ G + + S SL + A + G G + ++++ VV Sbjct: 70 GKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG-AAAFPALVMVVV 128 Query: 126 GRALPAEKRSMGMGIASAAGSFGQFAMLPGTLGLIS-WLGWSGALLVLGVMVALILPLVG 184 R +P E R G+ + + G+ + P G+I+ ++ WS LL+ + + + L+ Sbjct: 129 ARYIPKENRGKAFGLIGSIVAMGE-GVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMK 187 Query: 185 MLK 187 +LK Sbjct: 188 LLK 190 Score = 34.9 bits (80), Expect = 5e-04 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 12/138 (8%) Query: 12 LLGSALILALSLGTRHGFGLFLAPMSADFGWGREVFAFAIALQNLMWGLAQPFAGALADR 71 + G ++ + H V F + +++G G L DR Sbjct: 272 VAGFVSMVPYMMKDVHQLSTAEIG---------SVIIFPGTMSVIIFG---YIGGILVDR 319 Query: 72 FGAAKVVFVGGVLYAAGLLCMSMADSSLSLSLSAGLLIGIGLSGTSFSVILGVVGRALPA 131 G V+ +G + L S + S ++ ++ +G + +VI +V +L Sbjct: 320 RGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQ 379 Query: 132 EKRSMGMGIASAAGSFGQ 149 ++ GM + + + Sbjct: 380 QEAGAGMSLLNFTSFLSE 397
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 3e-04 Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 4 EQSVEIKVLARQGHGIKFIARELGISRNTVRKYLRK 39 E + + L A LG++RNT+RK +R+ Sbjct: 437 EYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.8 bits (77), Expect = 1e-04 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 13/110 (11%) Query: 25 YQEADDLPTARDFLKSNLDNQTSRIYLLLDDQNEPVGFAQLYPATCSLAMKRFYWIYDLF 84 Y++ D S ++ + +L + N +G ++ + I D+ Sbjct: 50 YEDDDMD-------VSYVEEEGKAAFLYYLE-NNCIGRIKI-----RSNWNGYALIEDIA 96 Query: 85 VEPRVRRQGNARYLMNQLTDIFTREGAQRLSLDTAKANVTAQALYESLGY 134 V R++G L+++ + L L+T N++A Y + Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 113 bits (285), Expect = 5e-33 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 12/112 (10%) Query: 66 YFEYDSSDLKPEAMRSLDVHA---KDLKANGARVVLEGNTDERGTREYNMALGERRAKAV 122 F ++ + LKPE +LD +L VV+ G TD G+ YN L ERRA++V Sbjct: 222 LFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSV 281 Query: 123 QRYLVLQGVSPAQLELVSYGEERPVATGNDEQS---------WAQNRRVELR 165 YL+ +G+ ++ GE PV + A +RRVE+ Sbjct: 282 VDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 61.6 bits (149), Expect = 2e-12 Identities = 46/260 (17%), Positives = 95/260 (36%), Gaps = 11/260 (4%) Query: 78 ARQTEVEQLEQKKIEQLKQEAVKAAEQKKEEAAQKAEEQKAADEAKK----AEQKAEEAK 133 A T E E E KQE+ + +++ A+ ++ A EAK Q E A+ Sbjct: 1029 APATPSETTETVA-ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQ 1087 Query: 134 KADDAKKADEAKKVADAKKLEEKQQADIAKKKAEEEAKKKTEEDAKKAAAEEAKKQAADE 193 + K+ + A E++++A + +K +E K ++ K+ +E + QA Sbjct: 1088 SGSETKETQTTETKETATV-EKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 194 AKKKAAEDAKKKAAEDAKKKAAADSAKKAQEAARKSAEDKKAQALADLLSDKPERQQALA 253 + + K+ ++ AK+ + + + + + PE Sbjct: 1147 RENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Query: 254 DERGDETAGSFDDLIR----VRASEGWSRPPS-ARNNMSVTLQIGMLPDGTIASVSIAKS 308 + + S R VR+ P + + N+ S + T A +S A++ Sbjct: 1207 TQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARA 1266 Query: 309 SGDGPFDSSAVAAVKNIGRL 328 + A ++I +L Sbjct: 1267 KAQFVALNVGKAVSQHISQL 1286 Score = 60.8 bits (147), Expect = 3e-12 Identities = 35/202 (17%), Positives = 71/202 (35%), Gaps = 8/202 (3%) Query: 61 ATTQTNQKIAGEAKKTAARQTEVEQLEQKKIEQLKQEAVKAAEQKKEEAAQKAEEQKAAD 120 Q + + AR E + A K+E + EQ A + Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATE 1060 Query: 121 EAKKAEQKAEEAKKADDAKKADEAKKVADAKKLEEKQQADIAKKKA--EEEAKKKTEEDA 178 + + A+EAK + K + +VA + ++ Q K+ A E+E K K E + Sbjct: 1061 TTAQNREVAKEAKS--NVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEK 1118 Query: 179 KKAAAEEAKKQAADEAKKKAAEDAKKKAAEDAKKKAAADSAKKAQEAARKSAEDKKAQAL 238 +E K + + K+ + + AE A++ + K+ Q +A+ ++ Sbjct: 1119 T----QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 239 ADLLSDKPERQQALADERGDET 260 ++P + + Sbjct: 1175 TSSNVEQPVTESTTVNTGNSVV 1196
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 27.8 bits (61), Expect = 0.018 Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 15/132 (11%) Query: 31 SGCIRTGSGELHERLQIVYRGVREVIKTYGPVTMGIEKVFMARNA--DSALKLGQARGAA 88 SG + G+ ++ E + + ++ + G T IEK M + + L+L + A Sbjct: 124 SGMVAEGANKVVEMSKKAVQETQKAVSVAGEATFLIEKQIMLNKSPNNKELELTKEEFAK 183 Query: 89 I------VAGAEEALEIAEYTATQVKQAVAGTGGANKEQVMM------MVMHLLKLTQKP 136 + + +E AL+ A +V V G +NK+QV+ + +++K+ Q Sbjct: 184 VEQVKETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVVKVAQGA 243 Query: 137 QIDASDALAIAL 148 + D + +AI+L Sbjct: 244 R-DLTKVMAISL 254
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.0 bits (132), Expect = 3e-12 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Query: 24 RILAAAGRMFIERGFEGASMEEIAKAAAVTRQTLYNRYPEGKESLFVAVAERMWKAFTIM 83 IL A R+F ++G S+ EIAKAA VTR +Y + + K LF + E + Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIY-WHFKDKSDLFSEIWELSESNIGEL 73 Query: 84 DVHALTDPRKGLRQIATE 101 ++ + E Sbjct: 74 ELEYQAKFPGDPLSVLRE 91
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 125 bits (316), Expect = 2e-37 Identities = 76/252 (30%), Positives = 109/252 (43%), Gaps = 17/252 (6%) Query: 3 VAMVTGTGSGIGKATALRLLADGWKVFGFDINSNSEL-----EACIGYTHAQ--VDLTDL 55 +A +TG GIG+A A L + G + D N D+ D Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 56 ASISEVVEHTSLSSKS-NLLVNCAGIREICSIDELSVEMWTKVMSLNVTSVFYISKLVEA 114 A+I E+ ++LVN AG+ I LS E W S+N T VF S+ V Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 115 KVRAAGASLNIVNIASVSGTLGEPNRTAYVTSKHALIGLTKQLAIEYGRFGVRVNAISPG 174 + + +IV + S + + AY +SK A + TK L +E + +R N +SPG Sbjct: 130 YMMDRRSG-SIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 175 VIRTPLTEHYFTDH---EQMSKIMGGQF-----LEKTGTTEDVANAVLYLASNQASFITG 226 T + + D EQ+ K F L+K D+A+AVL+L S QA IT Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 227 SNFVVDGGWSAG 238 N VDGG + G Sbjct: 249 HNLCVDGGATLG 260
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 74.9 bits (184), Expect = 3e-16 Identities = 54/150 (36%), Positives = 70/150 (46%), Gaps = 17/150 (11%) Query: 33 VDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITI 92 VD GK+TL LL++S I E K T D+ L ER++GITI Sbjct: 12 VDAGKTTLTESLLYNSGAITE------LGSVDKGTTRTDNTLL---------ERQRGITI 56 Query: 93 DVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIA 152 F K I DTPGH + + S D AI+L+ A+ GVQ QTR + Sbjct: 57 QTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 153 SLLGIKHIVVAINKMDLNGFD-EGVFESIK 181 +GI I INK+D NG D V++ IK Sbjct: 117 RKMGIPTIFF-INKIDQNGIDLSTVYQDIK 145
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.5 bits (79), Expect = 7e-05 Identities = 12/102 (11%), Positives = 41/102 (40%), Gaps = 1/102 (0%) Query: 27 LRDADSHESTARYLDRNPDMSFVAEAEGAVCGCVMCGHD-GRRGYLQHLIVLPEYRRQGI 85 + + + Y++ +F+ E G + + ++ + V +YR++G+ Sbjct: 47 FKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGV 106 Query: 86 AHELVERCLQRLEALGIYKCHLDVLKVNEAAGRYWSGQGWTL 127 L+ + ++ + L+ +N +A +++ + + Sbjct: 107 GTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 32.2 bits (73), Expect = 0.003 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 265 NLMRSANSLFVLVLTLPVYYLKPKLSEMQLLVAGMLLFGLGFTIASMS-SGIFVLLVAVF 323 N + +A L + T L +L +LL+ G+++ G I + S +L++A F Sbjct: 52 NWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARF 111 Query: 324 LYSLGATLFVPIHFSIFARLCNDEHRN 350 + GA F + + AR E+R Sbjct: 112 IQGAGAAAFPALVMVVVARYIPKENRG 138
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 30.1 bits (68), Expect = 0.015 Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 31/143 (21%) Query: 7 LQLILTGANGTLGIPLVRSLLQQSLQLQLLCLLRTQTSCDELA---------ATLSAVER 57 ++ ++TGA G +G + + LL+ Q+ + D L A L + + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGI---------DNLNDYYDVSLKQARLELLAQ 51 Query: 58 ARVEFLVVDICDAGAMAAAADSRPKLECALGIHLAADVSWDKSCED---MTALNVGGSEN 114 +F +D+ D M S ++ S E+ N+ G N Sbjct: 52 PGFQFHKIDLADREGMTDLFASG---HFERVFISPHRLAVRYSLENPHAYADSNLTGFLN 108 Query: 115 ---FCRFLLRQADRPALIYVSTA 134 C R L+Y S++ Sbjct: 109 ILEGC----RHNKIQHLLYASSS 127
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 28.7 bits (64), Expect = 0.009 Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 3/57 (5%) Query: 65 KIAELLVQIDCTLGRTAVLDEEHRLPWLLEY---GLCEVINLPGADMARLLGLFAAN 118 ++ + L ++ + ++ + ++ E G+ + L MA L N Sbjct: 59 QVGDDLYEVCLNISVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPN 115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 9e-22 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 3/107 (2%) Query: 6 TRQQLLLVDDEEDANEELAELLEGEGFCCFTASSVKMALHQLTAHPDIALVITDLRMPEE 65 T +L+ DD+ L + L G+ S+ + A LV+TD+ MP+E Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE 60 Query: 66 SGIQLIRHLREHTSRQHLPVIVTSGHADMDDVSDLLRLHVLDLFRKP 112 + L+ +++ R LPV+V S D KP Sbjct: 61 NAFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 144 bits (365), Expect = 5e-40 Identities = 73/257 (28%), Positives = 114/257 (44%), Gaps = 20/257 (7%) Query: 131 PSQVQTDIRFIEVSRTKLKQ---------AGTSIFGKGSNNFLFGAPGTVPGVTVTPGTV 181 QV + EV AG + F G GTV Sbjct: 344 RPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGA--NQYNKDGTV 401 Query: 182 SGALPSIPLAESAFN-IVWGGGSSKVLGILNALENSGFAYTLARPSLVALSGQSASFLAG 240 S +L S A S+FN I G +L AL +S LA PS+V L A+F G Sbjct: 402 SSSLAS---ALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVG 458 Query: 241 GEFPVPVPNTEGNG----ISIEYKEFGVRLTLTPTVVGRNRILLKVAPEVSELDFTSEIS 296 E PV + +G ++E K G++L + P + + +LL++ EVS + + S Sbjct: 459 QEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAAS-S 517 Query: 297 IAGTTVPIIRTRRTDTSIALADGESFVVSGLINTSNISTVEKFPGLGDIPILGAFFRSSK 356 + TR + ++ + GE+ VV GL++ S T +K P LGDIP++GA FRS+ Sbjct: 518 TSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTS 577 Query: 357 IQRDERELLMIVTPHLV 373 + +R L++ + P ++ Sbjct: 578 KKVSKRNLMLFIRPTVI 594
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 0.003 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 2/106 (1%) Query: 22 LQSALGSLGQVVSAGTGSLDDLLALVDVTFASVVFVGLDREHLMTQSALIESALEAKPML 81 L AL G V T + L + +V + L+ +A+P L Sbjct: 19 LNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDV-VMPDENAFDLLPRIKKARPDL 76 Query: 82 AIVALGDGMDNQLVLNAMRAGARDFVAYGSRSSEVAGLVRRLSKRL 127 ++ + + A GA D++ +E+ G++ R Sbjct: 77 PVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 41.4 bits (97), Expect = 3e-07 Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 4/144 (2%) Query: 29 TEGYSADRETVLRLLNESLATELVCVLRYKR-HYYMASGLKASVAAAEFLEHAEQEAQHA 87 TE ++ V LN L+ + + R H+Y+ G +F E + A+ Sbjct: 3 TENAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYV-KGPHFFTLHEKFEELYDHAAETV 61 Query: 88 DKLAERIVQLGGEPEFN-PDLLSKNSHAQYVAGNTLKEMVYEDLIAERIAVDSYREIIQY 146 D +AER++ +GG+P + S + EMV + + + +I Sbjct: 62 DTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGL 121 Query: 147 IGDS-DPTTRRIFEEILAQEEEHA 169 ++ D T +F ++ + E+ Sbjct: 122 AEENQDNATADLFVGLIEEVEKQV 145
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.4 bits (133), Expect = 1e-11 Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 7/146 (4%) Query: 3 PRAEQKQQTRRALLDAAHQLMESGRGFGSLSLREVARTAGIVPTGFYRHFEDMDQLGLAL 62 ++ Q+TR+ +LD A +L +G S SL E+A+ AG+ Y HF+D L + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQ-QGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 63 VSEVGQTFRETIRLVRHNEFAMG-GLIRASVKIFLERVAANRSQFLFLA-----REQYGG 116 E + ++R + LE + L + E G Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 117 SLKVRQALGALREGISADLTADLAKM 142 V+QA L + L Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHC 148
>PERTACTIN#Pertactin signature. Length = 922 Score = 28.9 bits (64), Expect = 0.009 Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 10 GLIGLLAACSSNDAPKPAAAPPVAPAIKV--PAGPGPLQPYQRELSGQLLGVPAGAEVEL 67 L+G A + AP+P P P P P P QP QR+ PAG E+ Sbjct: 561 SLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSA 620 Query: 68 AMLVIDERGRPQKLLTNTLLKGNGQSLPF-QLRFNPEAFPVGGR 110 A G T + N S +LR NP+A GR Sbjct: 621 AANAAVNTGGVGLASTLWYAESNALSKRLGELRLNPDAGGAWGR 664
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 29.1 bits (65), Expect = 0.029 Identities = 10/15 (66%), Positives = 12/15 (80%), Gaps = 1/15 (6%) Query: 125 IPLLSDIPLIGRMLF 139 +PLL DIP+IG LF Sbjct: 560 VPLLGDIPVIGA-LF 573
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 47.4 bits (112), Expect = 1e-08 Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 23/196 (11%) Query: 6 KTALIIGASRGLGLGLVQRLTEQGWQVTATVRDPQNAENLKAVEGVRIEA-------VDL 58 K A I GA++G+G + + L QG + A D + K V ++ EA D+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAV--DYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 59 DEPASLEVLVQKLRGEV--FDVLFVNAGI--TGAQHQSAAKSTAAELGQLFLTNAVAPIR 114 + A+++ + ++ E+ D+L AG+ G H + + E F N+ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDE----EWEATFSVNSTGVFN 122 Query: 115 LAGRFVEQI--RPGTGVLAFMSSWLGSVTCPDGANLALYKASKAALNSMTNTFVTELGEN 172 + + + R ++ S+ G A Y +SKAA T EL E Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAA----YASSKAAAVMFTKCLGLELAEY 178 Query: 173 RPTVLSMHPGWVKTDM 188 + PG +TDM Sbjct: 179 NIRCNIVSPGSTETDM 194
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 71.9 bits (176), Expect = 1e-16 Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 22/244 (9%) Query: 42 PKRVVVLEFSFLDGLASVGVTPVGAADDGDANR--VLPKVRKAVGEWQSVGLRSQPNIEV 99 P R+V LE+ ++ L ++G+ P G AD + P + +V + VGLR++PN+E+ Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVID---VGLRTEPNLEL 91 Query: 100 IARLKPDLIIADLGRHQALYNDLASLAPTLMLPSRGEDYQGSLKSAEL------IGVALG 153 + +KP ++ G + LA +AP G A + L Sbjct: 92 LTEMKPSFMVWSAG-YGPSPEMLARIAPGRGFNFS----DGKQPLAMARKSLTEMADLLN 146 Query: 154 KGPEMQARIAENRQHLKTVAEQIPANTN---VLFGVAREDSFSVHGPHSYAGSVLQAIGL 210 + +A+ ++++ + +L + V GP+S +L G+ Sbjct: 147 LQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 211 KVPEVRK-DAAPTEFVSLEQLLAL-DPNWLLVGHYRRPSIVDSWSKQPLWQVLGAVRNKQ 268 + + + VS+++L A D + L H +D+ PLWQ + VR + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH-DNSKDMDALMATPLWQAMPFVRAGR 265 Query: 269 VAEV 272 V Sbjct: 266 FQRV 269
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 28.0 bits (62), Expect = 0.021 Identities = 11/37 (29%), Positives = 21/37 (56%) Query: 91 VGILHMTDDGGGDAKVIAVPHDKLSQLYVDVKEYTDL 127 VG+ +++ A + V DK+ Q+Y D+K + D+ Sbjct: 245 VGLAALSNANKPSASPVKVLSDKIIQIYSDIKPFADI 281
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 31.9 bits (72), Expect = 0.008 Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 7/109 (6%) Query: 571 DLPEPPKVPDLPGQVGATVPGPQLPAVVTTPLAGTVPGAVARSAPAQGAAARVQVKPA-- 628 DL P V P V P P+ + + P +VQ +P Sbjct: 54 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 113 Query: 629 -----PPISLPQPNVLPFKPLQMPAPQISQADPIMLPSASADLAFSMPA 672 + P N P + A + + S L+ + P Sbjct: 114 VKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ 162 Score = 30.3 bits (68), Expect = 0.023 Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 14/129 (10%) Query: 622 RVQVKPAPPISL---------PQPNVLPFKPLQMPAPQISQADPIMLPSASADLAFSMPA 672 PA PIS+ P V P + + P A + P Sbjct: 36 IELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 95 Query: 673 KTALPERVEKVIELPAKSDKGIEARKA--INANTSISPTKP---QAVPKGGLMQSFQNQS 727 P+ V+KV E P + K +E+R A T A K + ++ Sbjct: 96 PKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 155 Query: 728 NAMNPNQRP 736 + N Q P Sbjct: 156 LSRNQPQYP 164
>PF07132#Harpin protein (HrpN) Length = 356 Score = 29.7 bits (66), Expect = 0.022 Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 204 LEGATEVAGSALGGWGGAAAGAAIGTMILPVVGTAIGAAIGGALGSWGGS 253 L G GS+LGG GG G +G + +G+ +G+A+GG LG G+ Sbjct: 69 LGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGLGGALGA 118
>PF03309#Bvg accessory factor Length = 271 Score = 27.0 bits (60), Expect = 0.036 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 3/64 (4%) Query: 24 EAGIEYAFIKAIEGATVQDAKYTTYRTDARVVGIKTGAYHYFRALSSSPEAQRDNIVSTL 83 +AG + F ++G + + A V + TG L ++ L Sbjct: 191 QAGAVFGFAGLVDGLVNRIRDDVDGFSGADVAVVATGH---TAPLVLPDLRTVEHYDRHL 247 Query: 84 TAAG 87 T G Sbjct: 248 TLDG 251
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 44.6 bits (105), Expect = 3e-08 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 58 WVAVQGNQVVGSIALKDIGSGQAALRKMFVAAPFRGKEFSIAAKLLDCLIKESSSRGVTE 117 ++ N +G I ++ +G A + + VA +R K + LL I+ + Sbjct: 68 FLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKK--GVGTALLHKAIEWAKENHFCG 125 Query: 118 MFLGTTDKFHAAHRFYEKHGFR 139 + L T D +A FY KH F Sbjct: 126 LMLETQDINISACHFYAKHHFI 147
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.7 bits (82), Expect = 8e-05 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 67 EFSTIGLVIVSDDYQGKGIGRKLMELAVGCVPPRTA------ILNATLAGAPLYEKMGF 119 ++ I + V+ DY+ KG+G L+ A+ + ++ Y K F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.011 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 98 RFPKTLMLSATTALVSVPLALALGIGAAMYRG---SRLDGALSFITLTLVAVPEFLV 151 R LM S L +PLA++ G G+ + G +S L + VP F V Sbjct: 970 RLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFV 1026
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 76.2 bits (187), Expect = 2e-18 Identities = 52/170 (30%), Positives = 74/170 (43%), Gaps = 2/170 (1%) Query: 85 TPPAPEPPPPEPPPPPPPPEPEQPVEDPDAVEPPPKPVEKPKVEKPKPVKKVEPVKKPTP 144 P PP P P PEPE E P + + KPKPVKKVE K+ Sbjct: 60 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVK 119 Query: 145 PAPTPAAAPSPPAPPAPAPAPPAPAAPPAPVKESAAVSGLASLGNPPPEYPGLALRRSWE 204 P + A+P PA + A AA PV ++ SG +L P+YP A E Sbjct: 120 PVESRPASPFENTAPARPTSSTATAATSKPV--TSVASGPRALSRNQPQYPARAQALRIE 177 Query: 205 GRVILRIKVLPNGRAGAVEVTKSSGKPVLDEAAVEAVRNWKFIPAKRGDT 254 G+V ++ V P+GR V++ + + + A+R W++ P K G Sbjct: 178 GQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSG 227
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 25.7 bits (56), Expect = 0.023 Identities = 9/26 (34%), Positives = 14/26 (53%) Query: 58 AYEDDEPEVYSDDPDIVADEGGGVTP 83 A+ E D+PD++ GG +TP Sbjct: 118 AFAQGEAWTPGDNPDVLIFPGGEMTP 143
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 90.8 bits (225), Expect = 1e-21 Identities = 52/153 (33%), Positives = 73/153 (47%), Gaps = 12/153 (7%) Query: 352 VSLVGGDKSDTLYGYWGNDTLVGGAGNDTLEGNAGDDVLTGGVGADKLTGGTGNDRFVFT 411 VS+ G + G GND LVG + ++ L+G AG+DVL GG GAD L GG G D FV+ Sbjct: 332 VSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYG 391 Query: 412 SSADSHAGSSDLITDFIWGQDKLDVAALGVTGFGNGRD-------GTLSMTYDENTDRTY 464 S DS + D I DF G DK+D++A G + + + +D T Sbjct: 392 SGQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITN 451 Query: 465 LRSSEPGADGHAFQVTLAGFDYTRELTNADLVV 497 L E G F V + G + +D++V Sbjct: 452 LWLHEAGHSSVDFLVRIVG-----QAAQSDIIV 479 Score = 73.1 bits (179), Expect = 7e-16 Identities = 43/162 (26%), Positives = 64/162 (39%), Gaps = 15/162 (9%) Query: 171 NSGLITDANFQPLINGTSHNDQLEGTDASESLKAGAGRDNVEAGAGNDRLFGGTGGDTLS 230 + + I + G ++ L + + ++ GAGND L+GG G DTL Sbjct: 321 SFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLY 380 Query: 231 GGAGADSFVYTRLSDSYRNDASGSYSSRDLITDFSGNGHDMIDVSALGFTGLGN------ 284 GGAG D+FVY DS ++ D I DF D ID+SA G + Sbjct: 381 GGAGRDTFVYGSGQDST-------VAAYDWIADFQKGI-DKIDLSAFRNEGQLSFVQDQF 432 Query: 285 -GYNGTLKVVLNLAGDATALKSLEADANGNRFEILLSGNHVN 325 G + + + A T L EA + F + + G Sbjct: 433 TGKGQEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVGQAAQ 474 Score = 56.5 bits (136), Expect = 1e-10 Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 11/137 (8%) Query: 39 GTPGNDYIRGGLANELLMGGGGNDQLVSGGGNDVMVSSAGYDGMDGGAGNDVFRFDRIGD 98 + GG N++L+G ++ L G GNDV+ AG D + GGAG D F + D Sbjct: 336 HGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQD 395 Query: 99 SYINGGGEHTDSISHFDPAHDTLDVSALGYSHLGD-------GYGDTLHIRSEPLRGIYF 151 S + D I+ F D +D+SA G G + ++ + I Sbjct: 396 STVAAY----DWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITN 451 Query: 152 LESYERDGNGKHFAVQF 168 L +E + F V+ Sbjct: 452 LWLHEAGHSSVDFLVRI 468 Score = 32.2 bits (73), Expect = 0.005 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Query: 44 DYIRGGLANELLMGGGGNDQLVSGGGNDVMVSSAGYDGMDGGAGNDVFRFDRIGDSYING 103 D+ + + G + GN + + GG+GND+ + D+ + G Sbjct: 305 DFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNS-ADNILQG 363 Query: 104 G 104 G Sbjct: 364 G 364
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 30.4 bits (68), Expect = 0.029 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 9/97 (9%) Query: 313 YTFELLQHYDHDQGSPEDRQFLL-VLVDSEGHNNYLNGQQASYFNTFSCVRKKIVFRPQL 371 + FE DQ S + LL L S + Y +ASY F+ R +V +P + Sbjct: 1102 FDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASYGYDFAFFRNALVLKPSV 1161 Query: 372 --------TTNRSVISGPQTAIVVGPPGEEIFTDELG 400 +TN S + A+ G + +F Sbjct: 1162 GVSYNHLGSTNFKSNSNQKVALKNGASSQHLFNASAN 1198
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.4 bits (66), Expect = 0.032 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 21/171 (12%) Query: 55 LIDEGYTRGQLGVAMSAIAIAYGLSKFLMGIVSDRSNPRYFLPFGLLVSAGIMFIFGFAP 114 L+ G+ ++ A+ ++G +SDR R L L +A I AP Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAP 94 Query: 115 WATSSVTIMFVLLFINGWAQGMGWPPSGRTMVHWWSQKER-------GGVVSVWNVAHNV 167 + ++++ + G G +G + ER VA V Sbjct: 95 ----FLWVLYIGRIVAG-ITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPV 149 Query: 168 GGGLIGPLFLLGMGWTNDWHAAFYVPAAVALLVAVFAFATMRDTPQSVGLP 218 GGL+G HA F+ AA+ L + + ++ + P Sbjct: 150 LGGLMGGFSP---------HAPFFAAAALNGLNFLTGCFLLPESHKGERRP 191
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 48.0 bits (114), Expect = 5e-09 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 7/91 (7%) Query: 16 VGATESFLVPVYTPAPVFPPELVKTRYAGKVRAQLWIKSDGQVREVRAVES-GHPQLAEA 74 V + S + P +P R G+V+ + + DG+V V+ + + Sbjct: 150 VTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFERE 209 Query: 75 VEQALRQWRYKPWVGTVGAPPMTTITVPVIF 105 V+ A+R+WRY+P P + I V ++F Sbjct: 210 VKNAMRRWRYEP------GKPGSGIVVNILF 234
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 39.6 bits (92), Expect = 3e-06 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 5/98 (5%) Query: 15 SAGTAQALPSYPVPLYMPEPDYPASMRYALVKNSVTVRIFIQADGGVRFLEV-QGATDPR 73 ++ ++ S P L +P YPA + ++ V V+ + DG V +++ Sbjct: 146 TSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANM 205 Query: 74 FISLTRSAVELWTFEPWDPPASHPEGEAVTVTFTFTGR 111 F ++A+ W +E P G V + F G Sbjct: 206 FEREVKNAMRRWRYE----PGKPGSGIVVNILFKINGT 239
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 34.8 bits (79), Expect = 3e-04 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 96 NFKRSIEDLFARLSELGRQHAERLAQEAQVEEAARARAEAEAAVRRLAEEQAAQQRAIEA 155 N K E + + + A + + EA AR +A AEA +R AEEQA QQ AI A Sbjct: 189 NVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEA--KRKAEEQARQQAAIRA 246 Query: 156 A 156 A Sbjct: 247 A 247
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 31.7 bits (72), Expect = 0.004 Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 44/205 (21%) Query: 151 VEVREAALALAGLTARVVDVEAYALERSFGLLAAQLGNG---HDELTVAVVDIGATMTTL 207 VE R + G AR V + +E +AA +G G + VVDIG T + Sbjct: 121 VERRAIRESAQGAGAREV----FLIEEP---MAAAIGAGLPVSEATGSMVVDIGGGTTEV 173 Query: 208 SVLHHGRIIYTREQLFGGRQLTDEI----QRRYGLSMEE--AGLAKKQGG--LPDDYVSE 259 +V+ ++Y+ GG + + I +R YG + E A K + G P D V E Sbjct: 174 AVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVRE 233 Query: 260 VLDPFKD------------------ALVQQVSRSLQFFFAAGQYNSVDH--------IML 293 + ++ AL + ++ + A + + ++L Sbjct: 234 IEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVL 293 Query: 294 AGGTASISGLEHLIQRRIGTPTMVA 318 GG A + L+ L+ G P +VA Sbjct: 294 TGGGALLRNLDRLLMEETGIPVVVA 318
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 276 bits (707), Expect = 2e-85 Identities = 106/404 (26%), Positives = 178/404 (44%), Gaps = 38/404 (9%) Query: 327 VPWDQALDLVLKTKGLDKRKVGSVLLVAPADEIAARERQELESL--------KQIAELAP 378 + W A D+V L+K S L + + A ER + + IA + Sbjct: 199 LSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIKQ 258 Query: 379 LRRE--------LLQVNYAKAADIAKLFQSVTS---AESKT-------DERGSITVDDRT 420 L R+ ++ + YAKA+D+ ++ ++S +E + D+ I +T Sbjct: 259 LDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQT 318 Query: 421 NNIIAYQTQDRLDELRRIVSQLDIPVRQVMIEARIVEANVDYNKQLGVRWGGSTNTSGNG 480 N +I D +++L R+++QLDI QV++EA I E LG++W +G Sbjct: 319 NALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKN--AGMT 376 Query: 481 KWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIGLGFVTNNTLLDLELSAMEKT 540 ++T GL + AG N V A + +GI GF N + L+A+ + Sbjct: 377 QFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGN--WAMLLTALSSS 434 Query: 541 GNGEIVSQPKVVTSDKETAKILKGTEIPYQESSSSG-----ATTVSFKEASLSLEVTPQI 595 +I++ P +VT D A G E+P S + TV K + L+V PQI Sbjct: 435 TKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQI 494 Query: 596 TPDNRIIMEVKVTKDEPDYLNAVLG---VPPIKKNEVNAKVLISDGETIVIGGVFSNTQS 652 + +++E++ + VN VL+ GET+V+GG+ + S Sbjct: 495 NEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVS 554 Query: 653 KVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRIMNNQA 696 DKVP LGD+P +G LFR SK L++F+ P ++ ++ Sbjct: 555 DTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRD 598 Score = 43.8 bits (103), Expect = 2e-06 Identities = 31/183 (16%), Positives = 71/183 (38%), Gaps = 10/183 (5%) Query: 283 GEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN-VPWDQALDL---VLK 338 E+ S +F+ D++ + ++ N ++ +V+G IT+R + + +Q VL Sbjct: 27 AEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLD 86 Query: 339 TKGLDKRKVG-SVLLVAPADEIAARERQELESLKQIAELAPLRRELLQVNYAKAADIAKL 397 G + VL V + + A + S + ++ + A D+A L Sbjct: 87 VYGFAVINMNNGVLKVVRSKD-AKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPL 145 Query: 398 FQSVTSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVRQVMIEARIVE 457 + + GS+ + +N ++ + L IV ++D + ++ + Sbjct: 146 LRQLND----NAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDRSVVTVPLSW 201 Query: 458 ANV 460 A+ Sbjct: 202 ASA 204
>PF05272#Virulence-associated E family protein Length = 892 Score = 27.3 bits (60), Expect = 0.042 Identities = 8/19 (42%), Positives = 11/19 (57%) Query: 4 LILVGPMGAGKSTIGRLLA 22 ++L G G GKST+ L Sbjct: 599 VVLEGTGGIGKSTLINTLV 617
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 41.5 bits (97), Expect = 3e-06 Identities = 28/125 (22%), Positives = 41/125 (32%), Gaps = 3/125 (2%) Query: 361 SDEDAVPTGSPAQPPTVTTTAPPA--GVPAGQAAAQTPRSSIPAPAAKPAPAPAPAPAQV 418 S + +PAQP +VT AP A Q + P P P P P AP + Sbjct: 36 SVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEP-PKEAPVVI 94 Query: 419 ATAKPAPAPAAKPAEKPAPAAAKPAAGSNWYSSQAPGHYVVQILGTSSEATAQAYIAEQG 478 KP P P KP +K + +S + +++ A + Sbjct: 95 EKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVA 154 Query: 479 GEYRY 483 R Sbjct: 155 SGPRA 159 Score = 32.3 bits (73), Expect = 0.004 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 1/84 (1%) Query: 350 GPLAEAAGSSDSDEDAVPTGSPAQPPTVTTTAPPAGVPAGQAAAQTPRSSIPAPAAKPAP 409 P E + ++A +P P V + + S +P AP Sbjct: 75 EPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAP 134 Query: 410 A-PAPAPAQVATAKPAPAPAAKPA 432 A P + A AT+KP + A+ P Sbjct: 135 ARPTSSTATAATSKPVTSVASGPR 158
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 43.0 bits (101), Expect = 7e-08 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 11/92 (11%) Query: 1 MRHAGFTLIELLIVVALIGILANVATPSFKQLIESSRGLAAAQELASGIRSARVA---AI 57 MR GFTL+E+++++ L+G+ A + +F +SR +AAQ LA R + Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMVLLAFP----ASRDDSAAQTLARFEAQLRFVQQRGL 56 Query: 58 TRNQIVTIHAIEGDWSNGWRIILDLDGKGPDE 89 Q + + D W+ ++ G D Sbjct: 57 QTGQFFGVS-VHPD---RWQFLVLEARDGADP 84
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 39.9 bits (93), Expect = 7e-07 Identities = 15/55 (27%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 6 KGFSLIELLVTVSLVGILAAIAIPSFTSSI---QSNKADTELSDLQRALNYARLE 57 +GF+L+E++V + ++G+LA++ +P+ + KA +++ L+ AL+ +L+ Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 28.7 bits (64), Expect = 0.008 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 2/24 (8%) Query: 8 RQTGMTLIEVLVSVLILAIGLLGA 31 +Q G TL+E++V ++I+ G+L + Sbjct: 6 KQRGFTLLEIMVVIVII--GVLAS 27
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 29.9 bits (67), Expect = 0.006 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 6 QGFGLVEIMVALVLGLVVSLGIVQIFTAARGTYQSQNAAARMQEDARFILSKLIQEIRMT 65 +GF L+E+M+ L+L V + ++ F A+R +Q AR + RF+ + +Q + Sbjct: 4 RGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQT-LARFEAQLRFVQQRGLQTGQFF 62 Query: 66 GMY 68 G+ Sbjct: 63 GVS 65
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 48.7 bits (116), Expect = 3e-10 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%) Query: 1 MRATS--RGFTLIELMIVVAIVGILAAVAYPAYTEYVKRTQRSAIASLLSEQTQALERFY 58 MRAT RGFTL+E+M+V+ I+G+LA++ P ++ + S + AL+ + Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMY- 59 Query: 59 SRSNTSTYVNATVSGGNSYYTIVLVPTA 86 + + Y T G S +V PT Sbjct: 60 -KLDNHHYPT-TNQGLES---LVEAPTL 82
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 430 bits (1107), Expect = e-136 Identities = 227/1052 (21%), Positives = 422/1052 (40%), Gaps = 65/1052 (6%) Query: 8 LSALAVRERSITLFLVCLISLAGIIAFFKLGRAEDPAFTVKVMTVVSVWPGATAQEMQDQ 67 ++ +R L ++ +AG +A +L A+ P ++V + +PGA AQ +QD Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 68 VAEKIEKRLQELRWYDRAETYT-RPGMAFTTLTLLDSTPPSQVPDEFYQARKKIGD---E 123 V + IE+ + + + + G TLT T P A+ ++ + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDP-------DIAQVQVQNKLQL 113 Query: 124 AMP-LPSGVIGPMVNDEYSDVTFAL---FALKAKGEPQRVLARDAES-LRQRLLHVPGVK 178 A P LP V ++ E S ++ + F G Q ++ S ++ L + GV Sbjct: 114 ATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVG 173 Query: 179 KVNIVGEQPERVYVEFSHERLATLGISPQTVFAALNDQNALTAAGSVETRGP------QV 232 V + G Q + + + L ++P V L QN AAG + Sbjct: 174 DVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNA 232 Query: 233 FIRLDGAFDELQKIRDTPVVAQ--GRTLKLADIATVKRGYEDPATFMIRNGGEPALLLGI 290 I F ++ + G ++L D+A V+ G E+ NG +PA LGI Sbjct: 233 SIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARING-KPAAGLGI 291 Query: 291 VMRDGWNGLDLGKALDQEVGAINAELPLGMSLSKVTDQAVNISSAVDEFMIKFFVALLVV 350 + G N LD KA+ ++ + P GM + D + ++ E + F A+++V Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351 Query: 351 MLVCFISMG-WRVGVVVAAAVPLTLAVVFVIMAMSGKNFDRITLGSLILALGLLVDDAII 409 LV ++ + R ++ AVP+ L F I+A G + + +T+ ++LA+GLLVDDAI+ Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 410 AIEMMV-VKMEEGYDRVAASAYAWSHTAAPMLSGTLVTAVGFMPNGFARSTAGEYTSNMF 468 +E + V ME+ A+ + S ++ +V + F+P F + G Sbjct: 412 VVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFS 471 Query: 469 WIVGIALIASWVVAVFFTPYLGVKLL----PDVKQIEGGHQALYNT---PRYNRFRRILA 521 + A+ S +VA+ TP L LL + + +GG +NT N + + Sbjct: 472 ITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVG 531 Query: 522 RVIAGKWLVAGSVIGLFVLAVLGMGLVKKQFFPVSDRPEVLIELQMPYGTSISQTSAAAA 581 +++ + V+ + F P D+ L +Q+P G + +T Sbjct: 532 KILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLD 591 Query: 582 KVESWLAEQAEAGIVTAYIGQGAPRFYMAMGPELPDPSFAKIVV-----RTDSQEQRETL 636 +V + + +A + + + G + + + A + + R + E + Sbjct: 592 QVTDYYLKNEKANVESVFTVNG-----FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 637 KHRLRQAISE-----GLAAEARVRVTQLVFGPYSPYPVAYRIAGRD--PETLRSIAAQVQ 689 HR + + + + V + + G D + + Sbjct: 647 IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706 Query: 690 QVLNASPMMRTVNTDWGTRTPALHFTLQQDRMQAMGLSSSQVAQQLQFLLTGLPVTAVRE 749 Q + +V + T + Q++ QA+G+S S + Q + L G V + Sbjct: 707 QHP---ASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 750 DIRTVQVVARSAGDTRLDPARIMDFTLTGVDGQRVPLSQIDTVDVRMEEPVMRRRDRTPT 809 R ++ ++ R+ P + + +G+ VP S T P + R + P+ Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPS 823 Query: 810 ITVRGNIADGLQPPDVSTAITRQLQPIIDKLPSGYRIEQAGSIEESGKAMTAMLPLFPIM 869 + ++G A G D + + KLP+G + G + + L I Sbjct: 824 MEIQGEAAPGTSSGDAMALMEN----LASKLPAGIGYDWTGMSYQERLSGNQAPALVAIS 879 Query: 870 LAVTLIILILQVRSISAMVMVFLTSPLGLIGVVPTLILFQQPFGINALVGLIALSGILMR 929 V + L S S V V L PLG++GV+ LF Q + +VGL+ G+ + Sbjct: 880 FVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAK 939 Query: 930 NTLILIGQIHH-NEQAGLDPFQAVVEATVQRARPVILTALAAILAFIPLTHSVFWGT--- 985 N ++++ E+ G +A + A R RP+++T+LA IL +PL S G+ Sbjct: 940 NAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999 Query: 986 --LAYTLIGGTFAGTVLTLVFLPAMYSIWFRI 1015 + ++GG + T+L + F+P + + R Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 72.9 bits (179), Expect = 4e-15 Identities = 58/332 (17%), Positives = 125/332 (37%), Gaps = 24/332 (7%) Query: 711 ALHFTLQQDRMQAMGLSSSQVAQQLQF----LLTGLPVTAVREDIRTVQVVARSAGDTRL 766 A+ L D + L+ V QL+ + G + + + + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK- 241 Query: 767 DPARIMDFTL-TGVDGQRVPLSQIDTVDVRMEE-PVMRRRDRTPTITVRGNIADGLQPPD 824 +P TL DG V L + V++ E V+ R + P + +A G D Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 825 VSTAITRQLQPIIDKLPSGYRIE----QAGSIEESGKAMTAMLPLFPIMLAVTLIILILQ 880 + AI +L + P G ++ ++ S + L IML ++ L L Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTL-FEAIMLVFLVMYLFL- 359 Query: 881 VRSISAMVMVFLTSPLGLIGVVPTLILFQQPFGINA--LVGLIALSGILMRNTLILIGQI 938 +++ A ++ + P+ L+G IL + IN + G++ G+L+ + ++++ + Sbjct: 360 -QNMRATLIPTIAVPVVLLGTF--AILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV 416 Query: 939 H-HNEQAGLDPFQAVVEATVQRARPVILTALAAILAFIPL-----THSVFWGTLAYTLIG 992 + L P +A ++ Q ++ A+ FIP+ + + + T++ Sbjct: 417 ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVS 476 Query: 993 GTFAGTVLTLVFLPAMYSIWFRIRADGSGRRL 1024 ++ L+ PA+ + + + Sbjct: 477 AMALSVLVALILTPALCATLLKPVSAEHHENK 508
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.0 bits (91), Expect = 2e-05 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 9/112 (8%) Query: 61 VSGKVLERFVDTGQAVNRGQPLMRIDPADLKLAANAQREAVNAARAKAKQAADEEIRYRS 120 + V E V G++V +G L+++ L A A ++ QA E+ RY+ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTA----LGAEAD---TLKTQSSLLQARLEQTRYQI 155 Query: 121 LRSSGTISASSYDQIKSTADSAKARLSAAEAQAEVALNATRYADLVADADGI 172 L S I + ++K + +S E +L +++ Sbjct: 156 LSRS--IELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK 205 Score = 32.9 bits (75), Expect = 0.002 Identities = 9/115 (7%), Positives = 32/115 (27%), Gaps = 5/115 (4%) Query: 81 PLMRIDPADLKLAANAQREAVNAARAKAKQAADEEIRYRSLRSSGTISASSYDQIKSTAD 140 + + K V ++ + ++ + + D+++ Sbjct: 250 AKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQ--- 306 Query: 141 SAKARLSAAEAQAEVALNATRYADLVADADGIVMETLV-EPGQVVSAGQAVVSVA 194 + + + + + A V + V G VV+ + ++ + Sbjct: 307 -TTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIV 360
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.1 bits (166), Expect = 8e-16 Identities = 33/203 (16%), Positives = 68/203 (33%), Gaps = 28/203 (13%) Query: 81 RDQIVIAATEHFSQYGYGKTTMSDLARAIGFSKAYIYKFFESKQAIGEMICAHCLSEIEA 140 R I+ A FSQ G T++ ++A+A G ++ IY F+ K + + E+ Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSD----LFSEIWELSES 68 Query: 141 EVSAAISQT-DQPPEKLRRMFKSVVEASIRLFSQD-----------RKLYEIATSAATER 188 + + + P + + ++ + + K + A ++ Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 189 WQATLVYEEHLKATLRDILQEGRQTGDFERKTPLDETVMAIYLVMRPYINPLLLQY---- 244 Q + L+ + L AI +MR YI+ L+ + Sbjct: 129 AQRN--LCLESYDRIEQTLKHCIEAKML--PADLMTRRAAI--IMRGYISGLMENWLFAP 182 Query: 245 -SFEHTDEGPSQLSSLVLRSLSP 266 SF+ E +++L Sbjct: 183 QSFDLKKEA-RDYVAILLEMYLL 204
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 507 bits (1307), Expect = e-180 Identities = 170/476 (35%), Positives = 261/476 (54%), Gaps = 34/476 (7%) Query: 3 QRQKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGN 62 IL+ DD+ IR +L L R D R N A W+A D+ +TD+ +PD N Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLELVQHIQHGYPHVPVAMITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSL 122 +L+ I+ P +PV +++A TAI A + GA+D++ KP DL L ++ AL+ Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 123 PCAQPARSIDSR-----LLGDSLAMRTLRNQIGKLARSQAPIYISGESGSGKELVARLIH 177 P +P++ D L+G S AM+ + + +L ++ + I+GESG+GKELVAR +H Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181 Query: 178 EQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVA 237 + G R + PF+ +N AIP +L+ESE FGH KG+F+GA G F+ A GTLFLDE+ Sbjct: 182 DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 238 DLPLAMQVKLLRAIQEKSIRSVGSQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLN 297 D+P+ Q +LLR +Q+ +VG + DVRI+ AT+K+L + G FR+DLYYRLN Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301 Query: 298 VIEVRVPSLRERREDIDQLAASVLKRLAGNGTQPVARLNAQALDTLKSYRFPGNVRELEN 357 V+ +R+P LR+R EDI L +++ G V R + +AL+ +K++ +PGNVRELEN Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQQAEKEG-LDVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 358 MLERAYTLCENDEIHASDLRL---------------------AESASPQEHNGPSLADID 396 ++ R L D I + + S + +E+ A Sbjct: 361 LVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFG 420 Query: 397 N-------LEDYLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD 445 + + L +E LIL AL TR N+ AA+ L L+ +LR ++++LG+ Sbjct: 421 DALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.5 bits (222), Expect = 3e-24 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 4 SVLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDALGKLTGQKVHLIISDVNMPNMDGIT 63 ++LV DD +++R V+ AL AGYDV + + L+++DV MP+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 FVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQMLAAVSKLI 120 + +KK P+++++ ++ + GA ++ KPF +++ + + + Sbjct: 65 LLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.005 Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 12/202 (5%) Query: 169 QVIDSLKATQASRDQTLSQVRSLTAYTGELRTMAADVAAIAAQTNLLALNA--AIEAARA 226 V+ L A A D +Q L A + R + + L L + Sbjct: 122 DVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSE 181 Query: 227 GEAGRGFAVVADAVRSLSSKSSE---TGQQMSAKVDIINNAITQLVQAASSGADQDS--- 280 E R +++ + + ++ + + A+ + I + + + Sbjct: 182 EEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFS 241 Query: 281 ---HSVAASEQSIQNVLERFQSITGRLAE-SADLLKQESFGIRDEMTEVLVNLQFQDRVS 336 H A ++ ++ ++ L + L + ES + + LV F++ + Sbjct: 242 SLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL 301 Query: 337 QILAHVRDNIDSLHAHLLQASQ 358 L DNI L L + + Sbjct: 302 DKLRQTTDNIGLLTLELAKNEE 323
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 51.4 bits (123), Expect = 2e-11 Identities = 17/48 (35%), Positives = 32/48 (66%) Query: 1 MNAQKGFTLIELMIVVAIVGILAAVAIPQYQNYVARANGASAVATLDA 48 + Q+GFTL+E+M+V+ I+G+LA++ +P +A+ AV+ + A Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVA 51
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 65.0 bits (158), Expect = 7e-14 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 36/199 (18%) Query: 163 DDRH--------PRHPSVGSSCGPRHESATGTAFVVGPAHVMTCAHVIE-DMGVFYITSL 213 +DRH P + + VVG ++T HV++ G + Sbjct: 74 NDRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKA 133 Query: 214 E-----------GRYKAEPVVI-DRRNDIALLRV----QGAPP---LSPVTFRDGQGCEP 254 G + AE + D+A+++ Q + P T + + Sbjct: 134 FPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQV 193 Query: 255 GDTVAVLGYPLASISGGGLQVTQGGISGLFGLHNDASLFQFTAPIQPGSSGSPLFDNGGA 314 + V GYP + ++G I+ L G Q+ G+SGSP+F+ Sbjct: 194 NQNITVTGYPGDK-PVATMWESKGKITYLKG-----EAMQYDLSTTGGNSGSPVFNEKNE 247 Query: 315 VIGMVTSTVPDGQNMNFAV 333 VIG+ VP N AV Sbjct: 248 VIGIHWGGVP--NEFNGAV 264
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 30.1 bits (67), Expect = 0.008 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 3 NDRPLIFVDLDDTLFQTARKTPANIEKHVATLDISGNANGYMTNVQKSFAHWLLAHSDV 61 ND L+F+D T+F A N + A ++ + GY TNV +SF L S++ Sbjct: 185 NDNRLVFIDDARTIFSLA--NIVNTNNNSADVNPKEDGIGYFTNVYESFQRLGLTKSNL 241
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 29.0 bits (65), Expect = 0.027 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%) Query: 165 GAISGEIRRSLAGDTRFPKEPRLVVLADPCGSAWLAASAEDWVIPSGI 212 A+S +I+ + + +F VVL + + + V+ S I Sbjct: 216 SALSKQIQIASTNNGQFETP---VVLINAQNQRVTITNVDAGVVTSNI 260
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.0 bits (75), Expect = 3e-04 Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 11/136 (8%) Query: 4 IVRAMADSDWSSLAQIFEQPVFRWWTLRMPYQSVNDIKKLVEGRSASGLSLVAERDGIVV 63 ++ A + W+ + F +P F+ Y+ + VE + + + + Sbjct: 26 MIPAFENGVWTYTEERFSKPYFK------QYEDDDMDVSYVE--EEGKAAFLYYLENNCI 77 Query: 64 GCAMLYRFQGRRQHVADFWMGVADGHHRQGIGDELLKELSATACRWMNVKRLELTVFVDN 123 G + + D + VA + ++G+G LL + + + L L N Sbjct: 78 GRIKIRSNWNGYALIED--IAVAKDYRKKGVGTALL-HKAIEWAKENHFCGLMLETQDIN 134 Query: 124 EPAIALYKKNGFVIEG 139 A Y K+ F+I Sbjct: 135 ISACHFYAKHHFIIGA 150
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 108 bits (270), Expect = 1e-26 Identities = 92/305 (30%), Positives = 129/305 (42%), Gaps = 36/305 (11%) Query: 234 HARLAAETAEQARMEAEAEAQVQRDADEHARVTAEAQALEAGKTLKLQEAATPQLGAVAG 293 R+ TA +A +EA A + + A A+ AE QA + A P G Sbjct: 201 QIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANG---S 257 Query: 294 VISVTAGSGLF--------LDATIQAAIEILTALAGTAVSATTAVGIGTLLYS------- 338 V++ AG GL L I AI +L + +A S AVG +L YS Sbjct: 258 VVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASAPSVM-AVGFASLTYSSRTAEQW 316 Query: 339 PSLGNGELPGRMLDLPARVLMPDLPDALNDVAATGGTIDMPYRIY----GDRSKYSVVAT 394 + L + A L LN VA GT+D+P R+ G+ + SVV+T Sbjct: 317 QDQTPDSVRYA-LGMDAAKLGLPPSVNLNAVAKASGTVDLPMRLTNEARGNTTTLSVVST 375 Query: 395 QAEGGFSPRVPVRALTLDPVANAYTFT----TSDTPPITLTLPIAAPG---NSSTTTVAQ 447 VPVR + Y T T++ PP+ LT A+P N S+TT Sbjct: 376 DGVS-VPKAVPVRMAAYNATTGLYEVTVPSTTAEAPPLILTWTPASPPGNQNPSSTTPVV 434 Query: 448 PVETPAYAGITLEPIEVKGEPLPGTSQMDIRDAIYVYPLNSGLPPVYVVFNSPYD---GA 504 P P Y G TL P++ E PG + D I +P +SG+ P+YV+F P D A Sbjct: 435 PKPVPVYEGATLTPVKATPETYPGVITLP-EDLIIGFPADSGIKPIYVMFRDPRDVPGAA 493 Query: 505 TTRGE 509 T +G+ Sbjct: 494 TGKGQ 498
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 26.7 bits (59), Expect = 0.044 Identities = 9/36 (25%), Positives = 18/36 (50%) Query: 50 YTDLNRSTLAEHLGIAPATLQRRLKVRRFNAEESDR 85 T N+ A+ LG+ TL+++++ + S R Sbjct: 447 ATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRSSR 482
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.3 bits (193), Expect = 3e-18 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 5/168 (2%) Query: 1 MSTLALLICDDSNMARKQLLRALPADWDVSVTLATQGQEGLEAIRKGQGQVVLLDLTMPV 60 M+ +L+ DD R L +AL + V + + I G G +V+ D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQAL-SRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 MDGYQTLTAIRAENLDTKVIVVSGDVQDEAVRRVMELGALAFLKKPADPDELKSTLERLG 120 + + L I+ D V+V+S + E GA +L KP D EL + R Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR-- 117 Query: 121 LLGKPAVSPVALPALNNKGGVISFQD-AFRETINVAMGRAAALLAKVL 167 L +P P L + G + + A +E V + R ++ Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRV-LARLMQTDLTLM 164
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 72.5 bits (178), Expect = 8e-17 Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 23/179 (12%) Query: 13 RLLLTGAAGGLGKVLRKTLR-------------PYANVLRLSDIAEMAPAVDDSEEVQVC 59 + L+TGAAG +G + K L Y +V E+ A + ++ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELL-AQPGFQFHKI- 59 Query: 60 DLADKDAVYRLIE--GVDAIVHFG---GV--SVERPFEEILGANICGVFHIYEAARRHGV 112 DLAD++ + L + + V S+E P +N+ G +I E R + + Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYA-DSNLTGFLNILEGCRHNKI 118 Query: 113 KRVIFASSNHVIGFYKQTETIDAHSPRRPDSYYGLSKSYGEDMASFYFDRYGIQTVSIR 171 + +++ASS+ V G ++ S P S Y +K E MA Y YG+ +R Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 33.1 bits (75), Expect = 0.002 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 17/150 (11%) Query: 222 RTQVGVWYSELQDIYQQQFFNLLHSQPVGDWTLG-ANLGYFIGNEDGNKLAGDLDNKTAY 280 R Q G ++E + + +LL S+ G W G A Y++ + NKL D+ N Sbjct: 83 RIQAGKGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAARHYWVKDGQWNKLEVDMQNAVGT 142 Query: 281 ALLSA--RYGGSTFYVGLQKLTGDTAWMRVNGTSGGTLANDSYNSSYDNAKEKSWQLRHD 338 LS + G V +QK T +R+ +G +S+ S D+A + R D Sbjct: 143 YNLSGLINFTGGDLDVNMQKAT-----LRLGQFNG-----NSFTSYKDSADRTT---RVD 189 Query: 339 YNFAVLGVPG-LTLMNRYISGDNVHTGNIT 367 +N + + L + NR SG + Sbjct: 190 FNAKNILIDNFLEINNRVGSGAGRKASSTV 219
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 129 bits (326), Expect = 9e-39 Identities = 76/248 (30%), Positives = 122/248 (49%), Gaps = 11/248 (4%) Query: 7 KVVVVTGAGSGIGEATAKRFAQEGASVVLVGRNRDKLDKVAMQLAGEGHLVRA--TDVAN 64 K+ +TGA GIGEA A+ A +GA + V N +KL+KV L E A DV + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 PSDVEALFKEVATHFGRLDVLVNNAGIVKSGKVTELGIEDWKELMSVDLDGVFYCTRTAM 124 + ++ + + G +D+LVN AG+++ G + L E+W+ SV+ GVF +R+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 125 PALIASK-GNIINVSSVSGLGGDWGMSFYNAAKGAITNFTRALAMDHGADGVRVNAVCPS 183 ++ + G+I+ V S M+ Y ++K A FT+ L ++ +R N V P Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 184 LTRSELTEDMLGD--------KALMAKFMERIPLGRPGEAEDVGDVIAFLASEDARFVTG 235 T +++ + D K + F IPL + + D+ D + FL S A +T Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 236 VNLPVDGG 243 NL VDGG Sbjct: 249 HNLCVDGG 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.6 bits (199), Expect = 7e-20 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Query: 2 RVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVMLPGLDGFG 61 +L+ +D+ L + L+ GY V + + D +++ DV++P + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRALRAR-KQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARL-QALTRRSG 119 +L ++ PV++++A+ I+ +GA DYL KPF EL+ + +AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 120 GHEPVQ 125 ++ Sbjct: 125 RPSKLE 130
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 748 bits (1934), Expect = 0.0 Identities = 282/1033 (27%), Positives = 493/1033 (47%), Gaps = 32/1033 (3%) Query: 12 IDHPVATLLLTFALVLLGVIAFPRLPIAPLPEAEFPTIQVTAQLPGASPETMASSVATPL 71 I P+ +L L++ G +A +LP+A P P + V+A PGA +T+ +V + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVI 65 Query: 72 EVQFSAIPGMTQMTSSSA-LGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADMPSL 130 E + I + M+S+S GS +TL F D A +VQ + A LP ++ Sbjct: 66 EQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ- 124 Query: 131 PTWRKVNPADSPVLILSVSSS--LMPGTELSDVTETILARQLSQIEGVGQVFITGQQRPA 188 + S +++ S ++SD + + LS++ GVG V + G Q A Sbjct: 125 QGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY-A 183 Query: 189 IRVQAAPEKLAALGLTLADIRLAVQQTSLNLAKGALYGKDSIS------TLSSNDQLFKP 242 +R+ + L LT D+ ++ + +A G L G ++ ++ + + P Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNP 243 Query: 243 QDYAQLIV-SYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTV 301 +++ ++ + +G+ V+LKDVARV G EN V A + + I GAN +DT Sbjct: 244 EEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTA 303 Query: 302 DRIQRELPRLQEMLPATVEVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLS 361 I+ +L LQ P ++V D T ++ S+HEV TL A++LV VM LFL+ + Sbjct: 304 KAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMR 363 Query: 362 ATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHL-EA 420 ATLI + + V L+ +FA++ FG+S+N LT+ +V+A+G +VDDAIVVVEN+ R + E Sbjct: 364 ATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMED 423 Query: 421 GQGTREAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVI 480 +EA K +I +V I+ L A FIP+ F GG G ++++F++T + + +SV+ Sbjct: 424 KLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVL 483 Query: 481 VSLTLAPTLAALFMRAPTHNPHQKPG--------FGERLLASYERGLRKALAHQRLMLGV 532 V+L L P L A ++ + H+ G + + Y + K L L + Sbjct: 484 VALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLI 543 Query: 533 FGLTLALAVVGYILIPKGFFPVQDTAFALGTTEAAADISYPDMVEKHLQLAKIVGADPAV 592 + L +A VV ++ +P F P +D L + A + + Q+ + Sbjct: 544 YALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKA 603 Query: 593 LAFS--HSVGVSGSNQTIANGRFWISLKPRSERDV---SVSEFIDRLRPKLAKVPGIVLY 647 S G S S Q G ++SLKP ER+ S I R + +L K+ + Sbjct: 604 NVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVI 663 Query: 648 LRAGQDINLSSGPSRSQYQYVLKSNDG-ELLNTWTQRLTEKLRSNPA-FRDMSNDLQLGG 705 I + ++ + ++ G + L +L +PA + + Sbjct: 664 PFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDT 723 Query: 706 SVTHIDIDRSAAARFGLTTADVDQALYDAFGQRQISEYQTEVNQYKVILELDAQQRGKAE 765 + +++D+ A G++ +D++Q + A G ++++ K+ ++ DA+ R E Sbjct: 724 AQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPE 783 Query: 766 SLAYFYLRSPLTNEMVPLSALAKVSAPRMGPLSISHDGMFPAANLSFNLASGVALGDAVS 825 + Y+RS EMVP SA G + P+ + A G + GDA++ Sbjct: 784 DVDKLYVRSA-NGEMVPFSAFTTSH-WVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 826 MLDQAKKEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFVHPLT 885 +++ + +PA I + G + + S P L+ + V V++ L LYES+ P++ Sbjct: 842 LMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 886 IISTLPSAGIGALLLLWMMGQDFSIMALIGIVLLIGIVKKNGILLVDFALQAQREQGLSS 945 ++ +P +G LL + Q + ++G++ IG+ KN IL+V+FA ++G Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 946 QEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVSQMLTLF 1005 EA A R RPI+MT+LA +LG LPL + G G+ + +GI V+GG++ + +L +F Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1006 TTPVIYLQLERLF 1018 PV ++ + R F Sbjct: 1020 FVPVFFVVIRRCF 1032 Score = 100 bits (250), Expect = 2e-23 Identities = 79/526 (15%), Positives = 176/526 (33%), Gaps = 49/526 (9%) Query: 1 MSGRGSVSAWCIDHPVATLLLTFALVLLGVIAFPRLPIAPLPEAEFPTIQVTAQLP-GAS 59 ++ + + LL+ +V V+ F RLP + LPE + QLP GA+ Sbjct: 523 VNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGAT 582 Query: 60 PETMASSVATPLEVQF-SAIPGMTQMTSSSALG----STNLTLQFTLNKSID--TAAQEV 112 E + + + + + + + + N + F K + + Sbjct: 583 QERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENS 642 Query: 113 QAAINTAAGRLPADMPSLPTWRKVNPADSPVLILSVSSSL---------MPGTELSDVTE 163 A+ R ++ + + ++ L ++ + L+ Sbjct: 643 AEAV---IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARN 699 Query: 164 TILARQLSQIEGVGQVFITGQQ-RPAIRVQAAPEKLAALGLTLADIRLAVQQTSLNLAKG 222 +L + V G + +++ EK ALG++L+DI + Sbjct: 700 QLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTIS--------- 750 Query: 223 ALYGKDSISTLSSNDQLFK------------PQDYAQLIVSYKNGAPVQLKDVARVVAGS 270 G ++ ++ K P+D +L V NG V Sbjct: 751 TALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVY 810 Query: 271 ENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQRELPRLQEMLPATVEVSVLNDRTRT 330 + ++ ++G + I PG + D + ++ L LPA + + Sbjct: 811 GSPRLERYNG-LPSMEIQGEAAPGTSSGDAMALME----NLASKLPAGIGYDWT-GMSYQ 864 Query: 331 IRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSAVLGVSLIASFAMMYLFGFSLNN 390 R S ++ + I+ ++V +A S + V V+ + ++ LF + Sbjct: 865 ERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDV 924 Query: 391 LTLVAIVVAVGFVVDDAIVVVENI-HRHLEAGQGTREAAIKGAGEIGFTVVSISFSLVAA 449 +V ++ +G +AI++VE + G+G EA + ++ S + + Sbjct: 925 YFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILG 984 Query: 450 FIPLLFMGGVVGRLFKEFALTATATILISVIVSLTLAPTLAALFMR 495 +PL G + ++ + ++++ P + R Sbjct: 985 VLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030 Score = 88.0 bits (218), Expect = 1e-19 Identities = 70/414 (16%), Positives = 140/414 (33%), Gaps = 30/414 (7%) Query: 625 VSVSEFIDRLRPKL---AKVPGIVLYLRAGQDINLSSGPSRSQYQYVLKSNDGELLNTWT 681 V V + P L + GI + SS S++ Sbjct: 105 VQVQNKLQLATPLLPQEVQQQGISVE-------KSSSSYL---MVAGFVSDNPGTTQDDI 154 Query: 682 QRLTEKLRSNPAFRDMSN--DLQLGGS--VTHIDIDRSAAARFGLTTADVDQALYDAFGQ 737 ++ D+QL G+ I +D ++ LT DV L Q Sbjct: 155 SDYVAS-NVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQ 213 Query: 738 RQISEYQTEVNQYKVILELDAQQRGKAESLAYF---YLRSPLTNEMVPLSALAKVSAPRM 794 + L + + ++ F LR +V L +A+V + Sbjct: 214 IAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARV---EL 270 Query: 795 GPLSISHDGMF---PAANLSFNLASGVALGDAVSMLDQAKKEI--GMPASI-IGSFQGAA 848 G + + PAA L LA+G D + E+ P + + Sbjct: 271 GGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTT 330 Query: 849 QAFQSSLANQPWLILAALVAVYIILGVLYESFVHPLTIISTLPSAGIGALLLLWMMGQDF 908 Q S+ + A++ V++++ + ++ L +P +G +L G Sbjct: 331 PFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSI 390 Query: 909 SIMALIGIVLLIGIVKKNGILLVDFALQAQREQGLSSQEAIYEACITRFRPIIMTTLAAL 968 + + + G+VL IG++ + I++V+ + E L +EA ++ ++ + Sbjct: 391 NTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLS 450 Query: 969 LGALPLMLGFGVGAELRQPLGIAVVGGLLVSQMLTLFTTPVIYLQLERLFHKRH 1022 +P+ G + + I +V + +S ++ L TP + L + H Sbjct: 451 AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEH 504
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.1 bits (130), Expect = 4e-10 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 8/80 (10%) Query: 55 VTGIGSV-LSLQSVVIRPQVDGVLTRVLVNEGQQVKAGELLATLDDRSIRASLEQARAQL 113 T G + S +S I+P + ++ ++V EG+ V+ G++L L A A Sbjct: 84 ATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL-------GAEADT 136 Query: 114 AQSKAQLDVAQLDLKRYRQL 133 ++++ L A+L+ RY+ L Sbjct: 137 LKTQSSLLQARLEQTRYQIL 156 Score = 39.0 bits (91), Expect = 3e-05 Identities = 36/217 (16%), Positives = 73/217 (33%), Gaps = 47/217 (21%) Query: 103 RASLEQARAQLAQSKAQLDVAQLDLKRYRQLTQDNGISRQTFDQQQALVRQLEATAKGNE 162 L ++QL Q ++++ A+ + + QL + + D+ +RQ Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFK-----NEILDK----LRQTTDNIGLLT 315 Query: 163 ASINASQVQLSYTQIRSPVTGRVGIRNV-DEGNFLRVGD-------------ATGLFSVT 208 + ++ + + IR+PV+ +V V EG + + T L Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNK 375 Query: 209 QID------PIAVEFS-LPQQMLPTLQGLIAERSAATVKAYQGDGAANGLLLGEGTLSLI 261 I ++ P L G + + ++ + N + +S+ Sbjct: 376 DIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVI------ISIE 429 Query: 262 DNQVSATTGTIRAKAQFKNPGEQLWPGQLVTVKIQTG 298 +N +S N L G VT +I+TG Sbjct: 430 ENCLST-----------GNKNIPLSSGMAVTAEIKTG 455 Score = 35.6 bits (82), Expect = 3e-04 Identities = 8/76 (10%), Positives = 27/76 (35%) Query: 103 RASLEQARAQLAQSKAQLDVAQLDLKRYRQLTQDNGISRQTFDQQQALVRQLEATAKGNE 162 RA A++ + + V + L + L I++ +Q+ + + + Sbjct: 213 RAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYK 272 Query: 163 ASINASQVQLSYTQIR 178 + + + ++ + Sbjct: 273 SQLEQIESEILSAKEE 288
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 721 bits (1862), Expect = 0.0 Identities = 292/862 (33%), Positives = 444/862 (51%), Gaps = 50/862 (5%) Query: 32 GLGLTLMFSLSAFAASPGGTRADGTVKFNTAFIQGSDQPP-DLQEFLRTNSVLPCTYRVD 90 G + L + + A +P + + FN F+ Q DL F + P TYRVD Sbjct: 25 GFFVRLFVACAFAAQAP---LSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVD 81 Query: 91 IYVNRKLSGRRDIAFSKNRVSGLIEPCLSLEMLQSFGLDLSRLLSDEGAAQG-CFDLPAR 149 IY+N RD+ F+ I PCL+ L S GL+ + + A C L + Sbjct: 82 IYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSM 141 Query: 150 VEFARVDYQPGALRLTISVPQAVMSRGARGYVSPELWDQGETAGFINYNANGSRRRNK-G 208 + A G RL +++PQA MS ARGY+ PELWD G AG +NYN +G+ +N+ G Sbjct: 142 IHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIG 201 Query: 209 LETDQYYLGMRNGLNLGAWRLRNESSL-----VGGSDRPWRYRSNRTFAQRDITFLKSQF 263 + YL +++GLN+GAWRLR+ ++ S +++ T+ +RDI L+S+ Sbjct: 202 GNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRL 261 Query: 264 TVGETFSDSQVFDSVRFKGAALASDDGMLSDSERAYAPVIRGIAETNATVEVRQNGFLLY 323 T+G+ ++ +FD + F+GA LASDD ML DS+R +APVI GIA A V ++QNG+ +Y Sbjct: 262 TLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIY 321 Query: 324 SGSVSPGPFEIADIYPSGSNGDLSVSVIEADGRVRTFTQAYASLPIMVPWGSLRYSLAVG 383 + +V PGPF I DIY +G++GDL V++ EADG + FT Y+S+P++ G RYS+ G Sbjct: 322 NSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAG 381 Query: 384 QVDNSNDVQASPDFASTALIYGLSERITGFGGLQLAEDYQAANIGAGINTG-LGAVSLDI 442 + + N Q P F + L++GL T +GG QLA+ Y+A N G G N G LGA+S+D+ Sbjct: 382 EYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDM 441 Query: 443 TRSVSQVAQQSR-SGQSIRVRYANTLDVTDTTLAVAGYRYSTEAYRTLSQHISDTDPQRH 501 T++ S + S+ GQS+R Y +L+ + T + + GYRYST Y + + Sbjct: 442 TQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYN 501 Query: 502 ALS-----------------TGLARDRLELSVTQIVSSHAASLSLTASEQRYWNLPGKPR 544 + R +L+L+VTQ + ++L L+ S Q YW Sbjct: 502 IETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGR-TSTLYLSGSHQTYWGTSNVDE 560 Query: 545 QLYLSYNAAWQTVNYSLSIERNEDFGQNGEASTDNRVALSVTLPLG--------SSPGSS 596 Q N A++ +N++LS ++ Q G D +AL+V +P S + Sbjct: 561 QFQAGLNTAFEDINWTLSYSLTKNAWQKG---RDQMLALNVNIPFSHWLRSDSKSQWRHA 617 Query: 597 RLSFNAVRDSTGEYNAQTGLNGQVLGDRDTFYSVQAGH----DSSSGSFGAGKISTTTGF 652 S++ D G G+ G +L D + YSVQ G+ D +SGS G ++ G+ Sbjct: 618 SASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGY 677 Query: 653 GRFEAGYSQGQDYDAFSLSAAGSLVAHPGGVNLGQALGETFALVQVPDVSGARLKSFSNV 712 G GYS D +G ++AH GV LGQ L +T LV+ P A++++ + V Sbjct: 678 GNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGV 737 Query: 713 ETAGNGYAVLPYAQAYRTNWVSLDTRQLGADVDLENAITQLVPRRGAIPLVRFKAVVGRR 772 T GYAVLPYA YR N V+LDT L +VDL+NA+ +VP RGAI FKA VG + Sbjct: 738 RTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIK 797 Query: 773 VQFELVRADGSKIPLGASVEDEQGRALAVVDPGSQALVLSEQDVGSLRVRWSD---QSCQ 829 + + + +P GA V E ++ +V Q + G ++V+W + C Sbjct: 798 LLM-TLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCV 856 Query: 830 AAFSLPPRDPTRAYERIRVTCQ 851 A + LPP + ++ C+ Sbjct: 857 ANYQLPPESQQQLLTQLSAECR 878
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 118 bits (296), Expect = 3e-34 Identities = 79/255 (30%), Positives = 118/255 (46%), Gaps = 16/255 (6%) Query: 3 LQGKIAVITGAASERGIGRATAVTFARHGARVVIIDLDES---AARDAAAALGEGHLGLA 59 ++GKIA ITGAA +GIG A A T A GA + +D + + A Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 60 ANVADEKQVHEAVSKIIAHYGRIDILVNNAGITQPIKTLDIRPGDYDKVLDVSLRGTLLM 119 A+V D + E ++I G IDILVN AG+ +P + +++ V+ G Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 120 SQAVIPTMRAQSSGSIVCMSSVSAQRGGGIFGGPHYSAAKAGVLGLGKAMAREFGPDQVR 179 S++V M + SGSIV + S A G Y+++KA + K + E +R Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 180 VNSIAPGLIHTDITGGLMQDERRHAII---------DGIPLGRLGAAQDVANAALFLASD 230 N ++PG TD+ L DE + GIPL +L D+A+A LFL S Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 231 LSSYLTGITLDVNGG 245 + ++T L V+GG Sbjct: 242 QAGHITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 32.7 bits (74), Expect = 2e-04 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 4/78 (5%) Query: 50 NSIHPAVILTPMWEPMLGSDAGREERMAALVQD----TSLRRFGMPEEVAALALLLASDD 105 N + P T M + + G E+ + ++ L++ P ++A L L S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 106 ATYITCSEFNIEGGLLAG 123 A +IT ++GG G Sbjct: 243 AGHITMHNLCVDGGATLG 260 Score = 32.3 bits (73), Expect = 3e-04 Identities = 15/35 (42%), Positives = 21/35 (60%) Query: 8 RTAVVTGAAQGIGAAIAKLFVQQGCFVYVTDINDD 42 + A +TGAAQGIG A+A+ QG + D N + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPE 43
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.1 bits (169), Expect = 3e-14 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Query: 710 LTRGIALLVDDEELVRASTCYMLAELGYRVIEAGSGEEAMQLIANGQAFDLLITDHLMPG 769 +T L+ DD+ +R L+ GY V + + IA G DL++TD +MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPD 59 Query: 770 INGTDLARVVRSSRPGTAVLLVSGYAE 796 N DL ++ +RP VL++S Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNT 86
>PF06704#DspF/AvrF protein Length = 129 Score = 222 bits (568), Expect = 6e-79 Identities = 98/129 (75%), Positives = 109/129 (84%) Query: 1 MRNPTPDFARFINALGVQLGTSLALQNGVCALYDGQNNEAAVIELPEHSEMVVFHCRVGR 60 M N DF+R I +LG QLGTSL QNGVCALYD Q+NEAAVIE+P+HSEMV+FHCRVGR Sbjct: 1 MNNSPTDFSRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCRVGR 60 Query: 61 CPERSTDLQRLLSLNFDVARLHGCWFAIDQGDVRLCAQRELASLDEPAFCDVTRGFISQA 120 P+R+ DLQ+LLSLNFDVAR+HG WFA+DQGDVRLCAQRELA LDE FCD RGFI QA Sbjct: 61 SPDRAADLQKLLSLNFDVARMHGSWFAVDQGDVRLCAQRELAVLDEAQFCDTARGFIVQA 120 Query: 121 REARAFLQA 129 REARA LQA Sbjct: 121 REARALLQA 129
>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein signature. Length = 173 Score = 30.8 bits (69), Expect = 0.030 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 13/114 (11%) Query: 1142 QRSYGLNLTTPFIILADNATGLWPTAGTTGNRNYILNAERCEG-GVTLYLISEGAGNVSG 1200 Q+ + +++ P+ + T + G TGN + N G G+ +YL + + Sbjct: 63 QKDFTVDMNCPYSLGTMKVT--ITSNGQTGNSILVPNTSTASGDGLLIYLYNSNNSGIGN 120 Query: 1201 GFGAGKDYWPGFFDENHPARSVDV-------GNNRTLTPNFRLGVDVTATVAAS 1247 G PG PAR + + GN ++L TAT+ AS Sbjct: 121 AVTLGSQVTPGKITGTAPARKITLYAKLGYKGNMQSLQAG---TFSATATLVAS 171
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 37.6 bits (87), Expect = 6e-05 Identities = 14/77 (18%), Positives = 20/77 (25%), Gaps = 1/77 (1%) Query: 360 KPVVEHLALPQTAQPVRVVERTPVPRPAQPVEVAERAPVPNPVEPMRVAEQSSAPQTPPL 419 V+ P +P E P P PV + + P P P + P+ Sbjct: 63 PQAVQPPPEPV-VEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPV 121 Query: 420 VPAVEHKEPPMTPRTPA 436 P P Sbjct: 122 ESRPASPFENTAPARPT 138 Score = 28.8 bits (64), Expect = 0.042 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 8/80 (10%) Query: 365 HLALPQTAQPVRVVERTPVPRPAQPVEVAERAPVPNPVEPMRVAEQSSAPQTPPLVPAVE 424 H A+ V + +P PAQP+ V AP E A Q PP Sbjct: 25 HGAVVAGLLYTSVHQVIELPAPAQPISVTMVAP--------ADLEPPQAVQPPPEPVVEP 76 Query: 425 HKEPPMTPRTPAREALSVPS 444 EP P P + + Sbjct: 77 EPEPEPIPEPPKEAPVVIEK 96
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 275 bits (704), Expect = 1e-91 Identities = 110/317 (34%), Positives = 150/317 (47%), Gaps = 45/317 (14%) Query: 32 DMDLLLCGETGTGKDTLANRIHELSSRS-GPFVGMNCAAIPESLAESQLFGVVNGAFTGV 90 D+ L++ GE+GTGK+ +A +H+ R GPFV +N AAIP L ES+LFG GAFTG Sbjct: 160 DLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGA 219 Query: 91 CRAREGYIEASSGGTLYLDEIDSMPLSLQAKLLRVLESRGVERLGSTEFIPLDLRVIASA 150 G E + GGTL+LDEI MP+ Q +LLRVL+ +G I D+R++A+ Sbjct: 220 QTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAAT 279 Query: 151 QRPLDELVEQGLFRRDLFFRLNVLTLHLPALRKRREQILPLFDQFTQEIAAEFQRPVPVL 210 + L + + QGLFR DL++RLNV+ L LP LR R E I L F Q+ E V Sbjct: 280 NKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRF 338 Query: 211 DNGRVQILLSHDWPGNVRELKSAAKRFVL------------------------------- 239 D ++++ +H WPGNVREL++ +R Sbjct: 339 DQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAAR 398 Query: 240 ------------GFPLLGAEPMDARDPVTGLRMQMRVIEKMLIQDALKRHRHNVDAVLQE 287 A DA P + +E LI AL R N Sbjct: 399 SGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADL 458 Query: 288 LELPRRTLYHRMKELGV 304 L L R TL +++ELGV Sbjct: 459 LGLNRNTLRKKIRELGV 475
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 29.1 bits (65), Expect = 0.015 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 140 TPDTLLRLLRSASWQARTRTVDESWSVASPLI--IGEMSLTREQIASLRPGDVV 191 + + RS++ Q D+ +V ++ +G + L+ I LR GD++ Sbjct: 231 SQFWFSSVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDII 284
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 111 bits (280), Expect = 2e-29 Identities = 67/416 (16%), Positives = 141/416 (33%), Gaps = 89/416 (21%) Query: 34 KRVVSSVIFAAVALVGVLVVLYAWQLPPFASPIESTENAQ----VKGQTTLIGPQLSGYV 89 V A ++G LV+ + +E A G++ I P + V Sbjct: 51 TPVSRRPRLVAYFIMGFLVIAFILS---VLGQVEIVATANGKLTHSGRSKEIKPIENSIV 107 Query: 90 YEVPVQDFQFVKAGDLLVRLDD------------RIYRQRLDQAIAQLAV---------- 127 E+ V++ + V+ GD+L++L + + RL+Q Q+ Sbjct: 108 KEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPE 167 Query: 128 ---------------QKASLANNLQQRRSA--------EATIGQRQAELQNSIAQSRKSA 164 + L + ++++ S E + +++AE +A+ + Sbjct: 168 LKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYE 227 Query: 165 ADLR-------RNQALVTDGSVSK--------------SELDVTRAADAQANAAVAEARA 203 R +L+ +++K +EL V ++ Q + + A+ Sbjct: 228 NLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKE 287 Query: 204 VLQIAREDLQT-VIVNRGSLEASVANAQAAIELARIDLDNTRIVAPRDGQLGQIGVR-LG 261 Q+ + + ++ ++ + + I AP ++ Q+ V G Sbjct: 288 EYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEG 347 Query: 262 AYVNSGAQLMALVPEQR--WIVANMKETQMAHVRLGQPVSFTVDALDG---HEMRGHVQR 316 V + LM +VPE + A ++ + + +GQ V+A + G V+ Sbjct: 348 GVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKN 407 Query: 317 ISPAAGSEFSLLPADNATGNFVKISQRIPVRIVVDADQPMLEHLRPGMSVVVSIDT 372 I+ A D G + I + ++ + L GM+V I T Sbjct: 408 INLDA-------IEDQRLGLVFNVIISIEENCLSTGNKNIP--LSSGMAVTAEIKT 454
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.8 bits (66), Expect = 0.038 Identities = 35/179 (19%), Positives = 52/179 (29%), Gaps = 25/179 (13%) Query: 237 RTLETHGKDEITELGVHFNAFVAKLRNVVGQLQN---------SAVALGQASTDLGSNAG 287 R +E +D +L A + K +G +N S +G A Sbjct: 76 REIELQFRDAEKKLEASVQAELDKADAALGPAKNLAPLDVINRSLTIVGNALQQKNQKLL 135 Query: 288 QAQKRSEQQSQQMDLVATAINEVTYGVQDVAKNAEQAANEMRDAESQAQQGQVNIDNSLR 347 QK+ + L TA V++ N +A D E + N+ Sbjct: 136 LNQKKITSLGAKNFLTRTAEEIGEQAVREGNINGPEAYMRFLDREMEGLTAAYNVKLFTE 195 Query: 348 QIGHLSATIGQAVEVMQSLASESTQIGSVLEVISSIAEQTNLLALNAAIEAARAGEQGR 406 I L Q + A S + A N AA EA R E+ Sbjct: 196 AISSL-----QIRMNTLTAAKASIE-----------AAAANKAREQAAAEAKRKAEEQA 238
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 82.8 bits (204), Expect = 7e-22 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 8/162 (4%) Query: 5 RERNKELILRAASEEFADKGFAASKTSDIAAKAGVPKPNVYYYFKSKENLYREVLESIIE 64 + ++ IL A F+ +G +++ +IA AGV + +Y++FK K +L+ E+ E Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 65 PILQAS------TPFNPQGVPADVLSSYIRSKIQISRDLPFASKVFASEIMHGAPHLTSE 118 I + P +P V ++L + S + R +F G + + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 119 QIEQLNGQARHNIE-CIQAWIDSGQI-APLDPHHLMFTIWAA 158 L ++ IE ++ I++ + A L + Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGY 170
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.2 bits (164), Expect = 1e-13 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 4/123 (3%) Query: 835 SGETILIVDDEPTVRMLLTDALGDLGYTLIEAADSLAGLKLLRSDVHIDLLITDVGLPGG 894 +G TIL+ DD+ +R +L AL GY + +++ + + + DL++TDV +P Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMP-D 59 Query: 895 MNGRQMADAGREVRPHLKTLFITGYAE-NAAIGDEQLGPGMRVLTKPFAIDALAARVQEL 953 N + ++ RP L L ++ AI + G L KPF + L + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKG-AYDYLPKPFDLTELIGIIGRA 118 Query: 954 MSA 956 ++ Sbjct: 119 LAE 121
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 81.2 bits (200), Expect = 2e-20 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 5/183 (2%) Query: 113 KRRLPKGEVRKAEIIQAAMTIFARDGYAGASLSNIAKVAGLSQVGLLHHFPTKLVLLQAV 172 ++ + + + I+ A+ +F++ G + SL IAK AG+++ + HF K L + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 173 LE-HRDQYVAARLHDAGQV--ASLEGFMAFLKQVMSFSIEDASVSQALMIINTESLSVTH 229 E L + L L V+ ++ + + II + V Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 230 --PAHRWFSERFQVVHSHLQTHLNVLAQAGEIRQDVDVRQISLEIVAMMDGMQIQWLRSP 287 + + ++ L +A + D+ R+ ++ + + G+ WL +P Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182 Query: 288 ADV 290 Sbjct: 183 QSF 185
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 125 bits (316), Expect = 2e-37 Identities = 79/253 (31%), Positives = 124/253 (49%), Gaps = 15/253 (5%) Query: 7 LAGKVALVQGGSRGIGAAIVQRLAKEGAAVAFTYVSSEVNALEIQDSIVANGGRALAIRA 66 + GK+A + G ++GIG A+ + LA +GA +A + E + S+ A A A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVS-SLKAEARHAEAFPA 64 Query: 67 DSGDEKAIRQAVQTTAETLGRLDILVNNAGILAIAPLNDFKMQDFDKTLAINVRSVFIAS 126 D D AI + +G +DILVN AG+L ++ ++++ T ++N VF AS Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 127 QEAARHM--EEGGRIINIGSTNADRMPFAGGATYAMSKSALIGLTKGMARDLGPQGITVN 184 + +++M G I+ +GS N +P A YA SK+A + TK + +L I N Sbjct: 125 RSVSKYMMDRRSGSIVTVGS-NPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 185 NVQPGPVDTDMNPA-----QGE------FAETLKALMALPRYGTSEEIASFVAYLAGPEA 233 V PG +TDM + G ET K + L + +IA V +L +A Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 234 GYITGASLTIDGG 246 G+IT +L +DGG Sbjct: 244 GHITMHNLCVDGG 256
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 45.8 bits (108), Expect = 3e-08 Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 29/196 (14%) Query: 5 DNGALILIDMQQGINHP-KLGRRNNPQAEANIGALLSAWRQSGRPVIHVRH-FSTSPQ-- 60 + L++ DMQ G + ANI L + Q G PV++ S +P Sbjct: 29 NRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNPDDR 88 Query: 61 ---SVFW-PEQSGVEYQ----SAFLPHADERELSKQVPDAFCGSFLEMWLRSDGIGQVVI 112 + FW P + Y+ + P D+ L+K AF + L +R +G Q++I Sbjct: 89 ALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLII 148 Query: 113 VGVITNNSVESTARSGGNLGFDVLVAHDACFTFDQQDFF---GTPRSAEDVHAMSLANLH 169 G+ + TA +A F D + FF + + H M+L Sbjct: 149 TGIYAHIGCLVTAC-------------EA-FMEDIKAFFVGDAVADFSLEKHQMALEYAA 194 Query: 170 GEYATVLSTAQILQQV 185 G A + T +L Q+ Sbjct: 195 GRCAFTVMTDSLLDQL 210
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 32.8 bits (74), Expect = 0.009 Identities = 44/196 (22%), Positives = 68/196 (34%), Gaps = 26/196 (13%) Query: 393 RREVLLELLERLKLRPKTVDSWLDFVDGKDRLAITIAPLD---EGLLLEQPALALIAESP 449 RRE+ L+ + K +V + LD D A +APLD L + AL + Sbjct: 75 RREIELQFRDAEKKLEASVQAELDKADAALGPAKNLAPLDVINRSLTIVGNALQQKNQKL 134 Query: 450 LFGQRVMQRRRREKRTDGGNNDAVIKNLTELREGAPVVHIDHGVGRYLGLATLEVENQVA 509 L Q+ K T G + + + E+ E A +G Y+ E+E A Sbjct: 135 LLNQK--------KITSLGAKNFLTRTAEEIGEQAVREGNINGPEAYMRFLDREMEGLTA 186 Query: 510 EFLMLAYAEDAKLYVPVANLHLIARYTGSDDETAPLHRLGSETWQKAKRKAAEQVRDVAA 569 + + KL+ I+ + L + A KA EQ A Sbjct: 187 AY-------NVKLFTEA-----ISSLQIRMNT---LTAAKASIEAAAANKAREQAAAEAK 231 Query: 570 ELLDIYARRAAREGYA 585 + AR+ A A Sbjct: 232 RKAEEQARQQAAIRAA 247
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 32.5 bits (74), Expect = 0.003 Identities = 71/401 (17%), Positives = 139/401 (34%), Gaps = 65/401 (16%) Query: 9 SQKHLKSSFFFLFLTIFVPFGLGHFVSYLFRTVNAVIYVDLQVDLSLPASSLGMLTGVYF 68 SQ +L+ + ++L I F S L V V D+ D + P +S + + Sbjct: 6 SQSNLRHNQILIWLCILS------FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFM 59 Query: 69 LTFAAAQI------DRYGPRSVQVPMLLFAVAGSVIFSISSTETGLLI-GRGLVGLGVAG 121 LTF+ D+ G + + + ++ GSVI + + LLI R + G G A Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAA 119 Query: 122 SLMSAIKACAIWLPVERLPLSTACLLSIGGLGAMASTTPLHALLSWLTWREAFLMLALLT 181 + A ++P E + + SI +G + ++ W L+ + Sbjct: 120 FPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITI 179 Query: 182 FCVAVVIHLSVPKAYETRNTRYSDMFAAV-----------GKLYSSWTFWRLALYS---- 226 V ++ L E R + D+ + S +F +++ S Sbjct: 180 ITVPFLMKLLKK---EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIF 236 Query: 227 ---------------VFSHAIYMSVLS-------------LWMGPWLRDMAGLSDSGMAN 258 + + +M + + ++D+ LS + + + Sbjct: 237 VKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGS 296 Query: 259 VLLFGAIAMVAGSLTFGTITDYL-RRFGVQPIMVCGAGMVI--FIGFQMLMASGLPVSPY 315 V++F ++ + FG I L R G ++ G + F+ L+ + Sbjct: 297 VIIF--PGTMSV-IIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTI 353 Query: 316 IVAMGFSFFGTSTTMNYAIVAQSVAPELAGRVSSSFNLVVF 356 I+ + T+ IV+ S+ + AG S N F Sbjct: 354 IIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSF 394
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.3 bits (84), Expect = 2e-04 Identities = 59/319 (18%), Positives = 114/319 (35%), Gaps = 30/319 (9%) Query: 34 AIAKTFFPSYSAFASLMLSLATFGAGFLMRPLGAIFLGAYIDRHGRRKGLIITLAMMAMG 93 + + S A + LA + LM+ A LGA DR GRR L+++LA A+ Sbjct: 30 GLLRDLVHSNDVTAHYGILLALYA---LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVD 86 Query: 94 TLLIACVPGYATLGVVAPLLVLLGRLLQGFSAGVELGGVSVYLAEISTPGRKGFFVSWQS 153 ++A P L +GR++ G + G Y+A+I+ + + S Sbjct: 87 YAIMATAPFLWVL--------YIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMS 137 Query: 154 ASQQAAVVFAGLLGVGLNHWLSPEQMGEWGWRVPFLIGCLIVPAIFIIRRSLEESPEFEA 213 A +V +LG GL MG + PF + F+ PE Sbjct: 138 ACFGFGMVAGPVLG-GL--------MGGFSPHAPFFAAAALNGLNFLT--GCFLLPESHK 186 Query: 214 RTHRPTLREVVRSISQ-NFGLVLGGMALVVMTTVSFYLITAYTPT----FGKNELNLTDL 268 RP RE + ++ + + +A ++ L+ FG++ + Sbjct: 187 GERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDAT 246 Query: 269 E-SLLVTVCVGVSNFIWLPIMGSFSDRIGRKPLLIAATVLAIATAYPALSWLVEHPSFSH 327 + + + + I G + R+G + + ++A T Y L++ Sbjct: 247 TIGISLAAFGILHSLAQAMITGPVAARLGERR-ALMLGMIADGTGYILLAFATRGWMAFP 305 Query: 328 LLMVELWFSFLYGSYNGAM 346 ++++ + + Sbjct: 306 IMVLLASGGIGMPALQAML 324
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 227 bits (581), Expect = 2e-77 Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 16/229 (6%) Query: 18 CAGIALVPVAV---------QAAEDDPWEGINRSIFSFN-DTLDAYTLKPLAKGYQYIAP 67 + +AL + Q DP EG NR++++FN + LD Y ++P+A ++ P Sbjct: 5 LSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWRDYVP 64 Query: 68 QFVEDGIHNFFNNIGDVGNLANNVLQAKPEAAGVDTARLIVNTTFGLLGFIDVGTRMGLQ 127 Q +G+ NF N+ + + N LQ P V R +NT G+ GFIDV + Sbjct: 65 QPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGMANPK 124 Query: 128 ---RNDEDFGQTLGYWGVPSGPFVVIPLLGPSTVRDAFAKYPDTYTSPYRYIDHVPTRNT 184 FG TLG++GV GP+V +P G T+RD D ++ + Sbjct: 125 LQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADALYPVLSWLTWPMSVGK 184 Query: 185 ALGVNLIDTRASLLSAERMV--SGDRYTFIRNAYLQNREFKVKDGKVED 231 + I+TRA LL ++ ++ S D Y +R AY Q +F G+++ Sbjct: 185 W-TLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGELKP 232
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 25.3 bits (55), Expect = 0.044 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 18 RVEADVNLIHAGQVIPAVCIDLSSSGMQVQAPRSFQVGDKLS----VSIDSDHPA 68 RV VN + + S + VQ PR + ++ +++++D PA Sbjct: 207 RVADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPA 261
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 116 bits (291), Expect = 3e-30 Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 1/129 (0%) Query: 68 TSAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQMFEQENPDLVVCDLRMPQMG 127 T A +L+ DDD +R L L +G+ V SN + + DLVV D+ MP Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 128 GLELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALD 187 +L+ ++ P PV+V+S A++A GA DYL KP DL L + RAL Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF-DLTELIGIIGRALA 120 Query: 188 RARLLTENQ 196 + Sbjct: 121 EPKRRPSKL 129
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 134 bits (339), Expect = 8e-39 Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 81/313 (25%) Query: 44 DRNFKNDGNLFGGSVGYFLTDDVEL--RLGYDEVHNVRSDSGKNIKGANTALDALYHFNN 101 + +K G +GY +TDD+++ RLG R+D+ N+ G N Sbjct: 90 NGAYKAQGVQLTAKLGYPITDDLDIYTRLG---GMVWRADTKSNVYGKNH---------- 136 Query: 102 PGDMLRPYLSAGFSDQSIGQDARNGRDGSTFANIGGGAKLYFTDNFYARAGVEAQYNIDQ 161 D + AG G + + I + +T+N + D Sbjct: 137 --DTGVSPVFAG------------GVEYAITPEIATRLEYQWTNNIGDAHTIG--TRPDN 180 Query: 162 GNTEWAPSVGIGVNFGGGS--KKVEAAPAPVAEVCSDSDNDGVCDNVDKCPDTPANVTVD 219 G S+G+ FG G V APAP EV + Sbjct: 181 GML----SLGVSYRFGQGEAAPVVAPAPAPAPEVQTKH---------------------- 214 Query: 220 ADGCPAVAEVVRVELDVKFDFDKSVVKPNSYGDIKNLADFMQQY--PQTTTTVEGHTDSV 277 ++ DV F+F+K+ +KP + L + + V G+TD + Sbjct: 215 ----------FTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI 264 Query: 278 GPDAYNQKLSERRANAVKQVLVNQYGVGASRVNSVGYGESRPVADNATEAGR-------- 329 G DAYNQ LSERRA +V L+++ G+ A ++++ G GES PV N + + Sbjct: 265 GSDAYNQGLSERRAQSVVDYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDC 323 Query: 330 -AVNRRVEAEVEA 341 A +RRVE EV+ Sbjct: 324 LAPDRRVEIEVKG 336
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 37.8 bits (87), Expect = 1e-04 Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 29/219 (13%) Query: 262 IVAQSRQSILYRVTDTHGQPWLLKTLPASRHDESGAGQGLLLEEWFLRRVAGRFFPEVHP 321 I + +Q ++ ++ + + L L A +H AG+ L V G V P Sbjct: 152 IETKDKQRLVAKIERSIAEGHLFAELEAYKHIYKTAGK-----HPNLANVHGM---AVVP 203 Query: 322 LADRQHLYYVMREYCG-------NTLADVFTRNGPLPLAQW---QDLATRLLRAAGLLHR 371 +R+ +M E G TLAD + + A W + +A RLL L + Sbjct: 204 YGNRKEEALLMDEVDGWRCSDTLRTLADSWKQGKINSEAYWGTIKFIAHRLLDVTNHLAK 263 Query: 372 RNIIHRDIKPENLLL-ADDGELCLLDFGLAYCPGLSTGNADDLPR--TPSYIAPE-AFNG 427 ++H DIKP N++ GE ++D GL G + P+ T S+ APE Sbjct: 264 AGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSG-------EQPKGFTESFKAPELGVGN 316 Query: 428 AEPHPQQDLYAAGVTLYYLLTGHYPYGEIEAFQHRRFGT 466 + D++ TL + + G EI+ Q RF T Sbjct: 317 LGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRFIT 355
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 61.4 bits (149), Expect = 2e-12 Identities = 91/461 (19%), Positives = 164/461 (35%), Gaps = 81/461 (17%) Query: 1 MDTSFWKAG--HKPTLFAAFLYFDLSFMVWYLLGPLAVQIATDLHLTTQQRGLMVATPIL 58 M+TS+ ++ H L + S + +L IA D + + +L Sbjct: 1 MNTSYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFML 60 Query: 59 AGAVLRFFMGLLADQLSPKTAGIIGQVI-VIGALLAAWQLGIHTYGQVLLLGLFLGMAGA 117 ++ G L+DQL K + G +I G+++ H++ +L++ F+ AGA Sbjct: 61 TFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG---HSFFSLLIMARFIQGAGA 117 Query: 118 SFAVALPLA--SQWYPPQHQGKAMG-IAGAGNSGTVLAALIAPVLAASFGWGNVFGLALI 174 + AL + +++ P +++GKA G I G + I ++A W + LI Sbjct: 118 AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL---LI 174 Query: 175 PLVLTLIAFTLMARNAPERSKPKSMADYLKAL------------GDRDSWWFMFFYSVTF 222 P++ + LM + + + K D + S F+ ++F Sbjct: 175 PMITIITVPFLM-KLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSF 233 Query: 223 GGFI------------------------------------GLASALPGYFNDQYGLSPIT 246 F+ G S +P D + LS Sbjct: 234 LIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAE 293 Query: 247 AGYYT--AACVFGGSLMRPLGGALADRFGGIRTLTVMYAVAAIGIAAVGFNLPSS-WAAL 303 G + + +GG L DR G + L + ++ F L ++ W Sbjct: 294 IGSVIIFPGTMSVI-IFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMT 352 Query: 304 ALFVAAMLGLGAGNGAVFQLVPQRFR-KEIGVMTGLI------GMAGGIG--GFLLAAGL 354 + V + GL + +V + +E G L+ GI G LL+ L Sbjct: 353 IIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPL 412 Query: 355 -------GTIKQNTGDYQLGLWLFAGLAVLAWFGLLNVKRR 388 + Q+T Y L LF+G+ V++W LNV + Sbjct: 413 LDQRLLPMEVDQSTYLYSNLLLLFSGIIVISWLVTLNVYKH 453
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 42.5 bits (100), Expect = 4e-07 Identities = 27/158 (17%), Positives = 66/158 (41%), Gaps = 5/158 (3%) Query: 3 RILLINDTARKVGRLKSALIEAGFEVIDESGLIIDLPARVEAVRPDVILIDTESPGRDVM 62 IL+ +D A L AL AG++V S L + A D+++ D P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAA-TLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EQVVLVSRDQPR-PIVMFTDEHDPGVMRQAIKSGLSAYIVEGIQAQRLQPILDVAMARFE 121 + + + + +P P+++ + ++ +A + G Y+ + L I+ A+A + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 SDQALRAQLHARDQQ--LAERKRIELAKELLMKMKDCN 157 + + + ++D + ++ +L ++ + Sbjct: 124 RRPS-KLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD 160
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 109 bits (273), Expect = 1e-27 Identities = 88/406 (21%), Positives = 155/406 (38%), Gaps = 14/406 (3%) Query: 19 LFAACLTGILIPLCFTGPAVVLPSINKALGGSAVELTCVINAYILTYGSAMMAAGSLTDI 78 L C+ L V LP I V A++LT+ G L+D Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 79 YGRKRVWLIGLAIFVLSTFAIPMASSVVQIDVF-RLIQGLGGAAAFAGAMSSLAQTFHGA 137 G KR+ L G+ I + + S + + R IQG G AA A M +A+ Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 138 DRTRVFSLLGTTFGIGLAFGHLAAGSLVDSAGWKWSFHATALIGVGGFFLVLFSATESRA 197 +R + F L+G+ +G G G + W + + + FL+ E R Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRI 195 Query: 198 PNATGMDWPGAISFTAALTLFTYAILLAPEDGWPHPLVMGGIIGSLLLFWIFIAVERRVA 257 D G I + + F +L +I S+L F IF+ R+V Sbjct: 196 KGH--FDIKGIILMSVGIVFF---MLFTTSYSISF------LIVSVLSFLIFVKHIRKVT 244 Query: 258 RPMLDLSLFKSARFVGVQILAASPAFFFVVLIIMLPARFIGIDGLSALETGQMMTALAAP 317 P +D L K+ F+ + + M+P + LS E G ++ Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTM 304 Query: 318 LLIV-PMLAAQLARRFTSGLLSGIGLLLVAVGLLWLALALDSGAIKTALLPMALIGIGIG 376 +I+ + L R + IG+ ++V L + L++ + ++ + ++G G+ Sbjct: 305 SVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLS 363 Query: 377 LPWGLMDGMAISVVEKEGAGMATGIFNAVRVSADGIAIAIAGTLLA 422 ++ + S ++++ AG + N ++G IAI G LL+ Sbjct: 364 FTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 33.7 bits (77), Expect = 2e-04 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 4 RQSGFTLLEVMVAILLM-IIVSLIAWRGLESMTRTDIQLRES 44 +Q GFTLLE+MV I+++ ++ SL+ + + + D Q S Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVS 47
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 35.3 bits (81), Expect = 3e-05 Identities = 11/67 (16%), Positives = 24/67 (35%) Query: 1 MMVVLVIIGIVSATVSMSIKPDPAALLRKDAERLAHMLHTAQIEARVDGRPITLLVDDKG 60 MM++L+++G+ + V ++ + R L Q G+ + V Sbjct: 11 MMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFFGVSVHPDR 70 Query: 61 FGFARRA 67 + F Sbjct: 71 WQFLVLE 77
>PilS_PF08805#PilS N terminal Length = 185 Score = 32.6 bits (74), Expect = 2e-04 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 1 MLQPHKEKGFTLIEVLVALLIIAVAMAAA-ARLSGVMTFNN 40 + +KG TL+EVL+ + +I V A+A S V + Sbjct: 20 RKKEQ-DKGATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQ 59
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 161 bits (409), Expect = 3e-54 Identities = 61/137 (44%), Positives = 84/137 (61%), Gaps = 6/137 (4%) Query: 16 QDGFTLIEIMVVVVILGILAAVVVPRVLDRPDQARAAAARQDIAGLMQALKLYRLDHGTY 75 Q GFTL+EIMVV+VI+G+LA++VVP ++ ++A A DI L AL +Y+LD+ Y Sbjct: 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHY 66 Query: 76 PNQAQSLKALVERP-ANINKNNWRA--YVERLPNDPWGHPYHYLNPGVNGEVDLFSLGAD 132 P Q L++LVE P N+ Y++RLP DPWG+ Y +NPG +G DL S G D Sbjct: 67 PTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLSAGPD 126 Query: 133 GQPDGEGVNADIGSWQL 149 G+ E DI +W L Sbjct: 127 GEMGTED---DITNWGL 140
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 378 bits (973), Expect = e-123 Identities = 185/667 (27%), Positives = 312/667 (46%), Gaps = 76/667 (11%) Query: 100 NFVEADIQSVVRALSRSTGQQFLLDPKVTGTLTLVSEGSVPASQAYEMLMAALRMQGFSV 159 +F DIQ + +S++ + ++DP V GT+T+ S + Q Y+ ++ L + GF+V Sbjct: 33 SFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLDVYGFAV 92 Query: 160 VDVG-GVAHVVPEDDARLLGGPVYSADKPS-GNGMLTRTFRLQYENAVNLIPVLRPIVSP 217 +++ GV VV DA+ PV S P G+ ++TR L A +L P+LR + Sbjct: 93 INMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPLLRQLNDN 152 Query: 218 NNPINA--YPGNNTIVVTDYADNLVRVAQIIDGIDTPSAIDTDVVTVHNGIAVDIASMVS 275 + Y +N +++T A + R+ I++ +D V + A D+ +V+ Sbjct: 153 AGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDRSVVTVPLSWASAADVVKLVT 212 Query: 276 EL---LDTQGGDATQKISVIGDPRSNAIIIRAGSPERTELARNLIYKLDNAQSNPSNLHV 332 EL + +V+ D R+NA+++ G P + +I +LD Q+ N V Sbjct: 213 ELNKDTSKSALPGSMVANVVADERTNAVLVS-GEPNSRQRIIAMIKQLDRQQATQGNTKV 271 Query: 333 VYLRNAQAGKLAQALRGLLTGESDSGASDTTRAMLSGMGSTGNKNDVQGNSSAGPVSRTV 392 +YL+ A+A L + L G+ S+ +++ Q + + Sbjct: 272 IYLKYAKASDLVEVLTGI---------------------SSTMQSEKQAAKPVAALDK-- 308 Query: 393 AGSGYGQSSASPSVATAGSQQAEQNTAFSAAGVTIQADATTNTLLISAPEPLYRNLREVI 452 + I+A TN L+++A + +L VI Sbjct: 309 -------------------------------NIIIKAHGQTNALIVTAAPDVMNDLERVI 337 Query: 453 DQLDQRRAQVVIESLIVEVSEDDANQFGVQWQTGNLNGSGGFGGVNLGGSGLNTGGSTSI 512 QLD RR QV++E++I EV + D G+QW N +G N G + Sbjct: 338 AQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKN---AGMTQFTNSGLPISTAIAGANQ 394 Query: 513 DVLPTGLNVGVVRGAVTIPGIG---EVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAAS 569 ++ + + GI + +L AL S +++L+TP+++TLDN A+ Sbjct: 395 YNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEAT 454 Query: 570 IFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSN 629 VGQ +P +TGS T G N F TV+R+ VG+KL V+PQI+EG +V L+I QEVS+ Sbjct: 455 FNVGQEVPVLTGSQTTSGD----NIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSS 510 Query: 630 VDQRASLASGTV---TNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLG 686 V AS S + N R ++ ++L+ G+ +V+GGLL + + + VP L IP++G Sbjct: 511 VADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIG 570 Query: 687 VLFRNEARSTSKTNLMVFLRPYIIRDSGTGRNITLNRYEFMRRAQGNLR-PERNWMLPDM 745 LFR+ ++ SK NLM+F+RP +IRD R + +Y AQ R E N + + Sbjct: 571 ALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKENNDAMLNQ 630 Query: 746 QAPQLPS 752 ++ Sbjct: 631 DLLEIYP 637
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 353 bits (907), Expect = e-122 Identities = 176/407 (43%), Positives = 253/407 (62%), Gaps = 4/407 (0%) Query: 1 MSRYHYEAADAQGTIESGHLDADSQDAVMADLRQRGLTALQVKIDS----QASSHGAGGL 56 M++YHY+A DAQG G +ADS LR+RGL L V + ++ S G Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 57 FSMRLSDADLASVTRQLASLLSAGLPLDEALGATVEQAERQHIIQTLGAIRTDVRSGMRL 116 +RLS +DLA +TRQLA+L++A +PL+EAL A +Q+E+ H+ Q + A+R+ V G L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 117 AEALAARPRDFPDIYRALIGAGEESGGLARVMERLADYIEERNGLRGKILTAFIYPGVVG 176 A+A+ P F +Y A++ AGE SG L V+ RLADY E+R +R +I A IYP V+ Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 177 LVSIAIVIFLLSYVVPQIVSAFSQARQDLPGLTLAMLAASDFIRAWGLVCLGVLLAALWG 236 +V+IA+V LLS VVP++V F +Q LP T ++ SD +R +G L LLA Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 237 WRICLRNPATRLRWHSQILRLPLIGRFVLGLNTARFASTLAILGAAGVPLLRALDAARQT 296 +R+ LR R+ +H ++L LPLIGR GLNTAR+A TL+IL A+ VPLL+A+ + Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 297 LSNDRLSLAVSEATSKVREGVNLAVALRMEKVFPPLLIHLIASGEKTGSLPPMLDRAAQT 356 +SND +S AT VREGV+L AL +FPP++ H+IASGE++G L ML+RAA Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 357 LSRDIERRALGMTALLELLMIVIMGGVVLVIVMAVMLPIIEINQLVN 403 R+ + L E L++V M VVL IV+A++ PI+++N L++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLMS 407
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.040 Identities = 38/259 (14%), Positives = 81/259 (31%), Gaps = 54/259 (20%) Query: 173 HAAELALGLESAQSQSLAVERNLRESQRVSSLGMLTASI-AHDFNNLLQALSASLQLVRM 231 + A+ + +E+Q L L A I H N L + A L+ Sbjct: 136 FGWHFFKNYKQAEIDQWKMASMAQEAQ----LMALKAQINPHFMFNALNNIRA---LILE 188 Query: 232 RSRRPTD-VETLSDTGLRAVDHGRQLVTRLLDSVRQDGPELICIDVSERIDAARDLL-LR 289 + + + +LS+ +R S+R + +++ + L L Sbjct: 189 DPTKAREMLTSLSEL-MRY-------------SLRYSNARQV--SLADELTVVDSYLQLA 232 Query: 290 SA--GDNLELSFDLSAQGWGVLCAEAQLHAAVLNLLANARDAMSGSGKVHIATRLESVKE 347 S D L+ ++ V + V N + + + GK+ + + Sbjct: 233 SIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKD---- 288 Query: 348 DPRLPEGDYLVLSVADNGPGMAADLKEQIFEPFFTTRRSEPGAGLGLVQVQE-FAVNAGG 406 + L V + G + ++ G GL V+E + G Sbjct: 289 ------NGTVTLEVENTGSLAL--------------KNTKESTGTGLQNVRERLQMLYGT 328 Query: 407 GARVETAPENG-TTVHLYL 424 A+++ + + G + + Sbjct: 329 EAQIKLSEKQGKVNAMVLI 347
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 108 bits (271), Expect = 2e-27 Identities = 106/328 (32%), Positives = 147/328 (44%), Gaps = 57/328 (17%) Query: 40 LTYSFHTANSVYATDYSRSQEPSDAYSLTDAQAAAARSALGAWSAVADIKFTEVQDTPDN 99 LT+ F + S S + Q A+ +L +WS VA++ FTEV Sbjct: 76 LTFKFLQSVS------SIPSGDTGFVKFNAEQIEQAKLSLQSWSDVANLTFTEVTGNKS- 128 Query: 100 VGDIRFGGFKSLQSTEYGQ-----AYAPGTLGRSGDVW-IGPKVNAADPAKGTDDYLTFM 153 +I FG + S AY PG +G W + N +P TF Sbjct: 129 -ANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQSNIRNPGSEEYGRQTFT 187 Query: 154 HETGHALGLKHSFEASQYNDVLLDAKFEDAR-------YTIMSY----TNNYSFK---PT 199 HE GHALGL H +YN D + DA ++IMSY + Sbjct: 188 HEIGHALGLAH---PGEYNAGEGDPSYNDAVYAEDSYQFSIMSYWGENETGADYNGHYGG 244 Query: 200 TPMLLDVAAMQFIYGANTSYHTGNDVYKW------------APDQSVFETIWDAGGKDTI 247 PM+ D+AA+Q +YGAN + TG+ VY + +++ ++WDAGG DT Sbjct: 245 APMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTF 304 Query: 248 DASNQASFVKINLNEGEFSTIGKAFLDYNQNPDAPTLMNSGLAIAYGAHIENAIGSAFND 307 D S ++ +INLNEG FS +G ++IA+G IENAIG + ND Sbjct: 305 DFSGYSNNQRINLNEGSFSDVGGL--------------KGNVSIAHGVTIENAIGGSGND 350 Query: 308 TLIGNSLDNVLDGRGGLDTMIGGLGNDT 335 L+GNS DN+L G G D + GG G DT Sbjct: 351 ILVGNSADNILQGGAGNDVLYGGAGADT 378 Score = 68.5 bits (167), Expect = 2e-14 Identities = 55/228 (24%), Positives = 79/228 (34%), Gaps = 37/228 (16%) Query: 302 GSAFNDTLIGNSLDNVLDGRGGLDTMIGGLGNDTYVIDQAGELALVQEKANEGIDTLKIT 361 + D L ++ G DT D +G + NEG + Sbjct: 275 SNTDRDFYTATDSSKALIF-----SVWDAGGTDT--FDFSGYSNNQRINLNEGSFSDVGG 327 Query: 362 YDNTSPVATVIDLNAGPLANFENVHLKGEGEFTLLGNDRNNTLTGNDANNVLFGGAGNDK 421 +A G +G N+ L GN A+N+L GGAGND Sbjct: 328 LKGNVSIA------------------HGVTIENAIGGSGNDILVGNSADNILQGGAGNDV 369 Query: 422 LVGGLGADIMTGGSGADRFVFNDLAEMGKGHASDVITDFNSQQGDKLSFLKMDANVDTKA 481 L GG GAD + GG+G D FV+ + A D I DF DK+ Sbjct: 370 LYGGAGADTLYGGAGRDTFVYGSGQDSTVA-AYDWIADFQK-GIDKIDLSAFRNEGQLSF 427 Query: 482 LDAFSFIGSGE-----FTGAGQLRFADHVLSGNVNGDLHADFEIQLVG 524 + F G G+ + A + L + G DF +++VG Sbjct: 428 VQD-QFTGKGQEVMLQWDAANSIT----NLWLHEAGHSSVDFLVRIVG 470
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 25.5 bits (55), Expect = 0.032 Identities = 11/24 (45%), Positives = 14/24 (58%) Query: 36 LKVSGSTALVLGVPLPIFYWILIA 59 LK G +AL+ + P F W LIA Sbjct: 165 LKAKGKSALMFNLQEPYFTWPLIA 188
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 29.6 bits (66), Expect = 0.005 Identities = 12/22 (54%), Positives = 14/22 (63%) Query: 95 THNHGTESDATASYHNGNSDPR 116 +HN TE ATA+Y GN PR Sbjct: 261 SHNSQTEVAATAAYRFGNVTPR 282
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1089 bits (2818), Expect = 0.0 Identities = 426/1040 (40%), Positives = 644/1040 (61%), Gaps = 17/1040 (1%) Query: 4 SKFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETV 63 + FFI RPIFA VL++++++AGA+++ QLP+++YP + PP V V AN+PGA+ + + +TV Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 AAPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTELDNAQVQVQNRVTRTEPKLPEE 123 +EQ + G++ ++YMSS + + G +T+T+TF GT+ D AQVQVQN++ P LP+E Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 124 VTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYAVLNIKDELARLGGVGDVQLFGMG 183 V + GI+V+K+S MV S + +S+Y N+KD L+RL GVGDVQLFG Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-A 180 Query: 184 DYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQMSINTQGRL 243 Y++R+WLD + LT DV+N ++ QN Q+AAGQLG P+ SI Q R Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 244 VTEEEFENVVVRAGADGEITRLKDVARIELGSSQYALRSLLNNQPAVAIPIFQRPGSNAI 303 EEF V +R +DG + RLKDVAR+ELG Y + + +N +PA + I G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 304 DISNDVRARMAELKKSFPEGMDYSIVYDPTIFVRGSIEAVIHTLFEALILVVLVVILFLQ 363 D + ++A++AEL+ FP+GM YD T FV+ SI V+ TLFEA++LV LV+ LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 364 TWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVER-N 422 RA++IP +AVPV L+GTFA++ FG+S+N L++FG+VLAIG++VDDAIVVVENVER Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 423 IELGLEPVQATHKAMAEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVI 482 +E L P +AT K+M+++ G ++ A+VL AVF+P AF G TG Y+QF++TI + + Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 483 SAFNSLTLSPALAAVLLKGHDAPKDRFSRFLDRILGGWLFRPFNRFFEKASHGYVGTVAR 542 S +L L+PAL A LLK A F FN F+ + + Y +V + Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKG--------GFFGWFNTTFDHSVNHYTNSVGK 532 Query: 543 VIRSSGIALLVYAGLMVLTWLGFASTPTGFVPSQDKQYLVAFAQLPDAASLDRTEDVIKR 602 ++ S+G LL+YA ++ + F P+ F+P +D+ + QLP A+ +RT+ V+ + Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 603 MSELALK--QPGVENAIAFPGLSINGFTNSPNNGVVFVALKPFEERKDPSLSANAIAGAL 660 +++ LK + VE+ G S +G + N G+ FV+LKP+EER SA A+ Sbjct: 593 VTDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAVIHRA 650 Query: 661 NGQFASIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLGYDELYKETQNIIAKSRSVP- 719 + I++ ++ F P + LGT GF ++ D+ LG+D L + ++ + P Sbjct: 651 KMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 720 ELAGLFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQVYLGSLYANDFNRFGRTYQV 779 L + + + Q +D+EKA+ GV++SDI T+ LG Y NDF GR ++ Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 780 NVQAEQQFRQDADQIGQLKVRNNLGEMIPLATFVKVSDTAGPDRVMHYNGFITAEINGAA 839 VQA+ +FR + + +L VR+ GEM+P + F G R+ YNG + EI G A Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA 830 Query: 840 GPGFSSGQAQAAVEKLLREELPNGMVYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAA 899 PG SSG A A +E L +LP G+ Y+WT ++YQ+ LSGN A + + ++ FL LAA Sbjct: 831 APGTSSGDAMALMENLA-SKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 900 QYESWSLPLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVEFAK 959 YESWS+P++V+L+VP+ ++ + + N+++ +GL+ +GL+ KNAILIVEFAK Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 960 D-KQAEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFSG 1018 D + EG ++A L A R+RLRPILMTS AFI+GV+PL +S+GAG+ ++A+G+ V G Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 1019 MLGVTFFGLLLTPVFYVLIR 1038 M+ T + PVF+V+IR Sbjct: 1010 MVSATLLAIFFVPVFFVVIR 1029 Score = 92.2 bits (229), Expect = 6e-21 Identities = 87/531 (16%), Positives = 181/531 (34%), Gaps = 50/531 (9%) Query: 544 IRSSGIALLVYAGLMVLTWLGFASTPTGFVPSQDKQYLVAFAQLPDAASLDRTEDVIKRM 603 IR A ++ LM+ L P P+ + A P A +D + ++ Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQTVQDTVTQV 64 Query: 604 SELALKQ-PGVENAIAFPGLSINGFTNSPNNGVVFVALKPFEERKDPSLSANAIAGALNG 662 E + + ++ ++S + + + F+ DP ++ + L Sbjct: 65 IEQNMNGIDNLM--------YMSSTSDSAGSVTITLT---FQSGTDPDIAQVQVQNKLQL 113 Query: 663 QFASIQEAYMAIFPPPPVQGLGTIGGFRLQIE---DRGNLGYDELYKETQNIIAKSRSVP 719 + + + + + + D D++ S Sbjct: 114 ATPLLPQE----VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISD-----YVASNVKD 164 Query: 720 ELAGL--FTSYTVNVPQVDAAI--DREKAKTHGVAVSDIFDTL-----QVYLGSLYANDF 770 L+ L + Q I D + + + D+ + L Q+ G L Sbjct: 165 TLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQL-GGTP 223 Query: 771 NRFGRTYQVNVQAEQQFRQDADQIGQLKVRNNL-GEMIPLATFVKVSDTAGPDRVM-HYN 828 G+ ++ A+ +F ++ ++ G++ +R N G ++ L +V V+ N Sbjct: 224 ALPGQQLNASIIAQTRF-KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARIN 282 Query: 829 GFITAEINGAAGPGFSSGQAQAAVEKL---LREELPNGM----VYEWTDLTYQQILSGNT 881 G A + G ++ A++ L+ P GM Y+ T I Sbjct: 283 GKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVK 342 Query: 882 ALFVFPLCVLLAFLVLAAQYESWSLPLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLI 941 LF ++L FLV+ ++ L + VP+ LL A + G N T G++ Sbjct: 343 TLF---EAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMV 399 Query: 942 VLVGLACKNAILIVE-FAKDKQAEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLS 1000 + +GL +AI++VE + + + P +A ++ ++ + +P+ Sbjct: 400 LAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFF 459 Query: 1001 SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVF-YVLIRNYVERQEARKAA 1050 G+ + + + S M L+LTP L++ K Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGG 510
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.8 bits (132), Expect = 2e-10 Identities = 18/102 (17%), Positives = 44/102 (43%) Query: 65 EVRPRMSGQIDQVAFTDGSLVKKGDLLFQIDPRPFQSEVRRLEAQLQQARAVALRSDNEA 124 E++P + + ++ +G V+KGD+L ++ +++ + ++ L QAR R + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 125 QRGERLRTNNAISAELADSRTTSAQEAKAGVAAIQAQLDLAR 166 + E + + + S +E + I+ Q + Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Score = 37.1 bits (86), Expect = 1e-04 Identities = 14/119 (11%), Positives = 42/119 (35%), Gaps = 12/119 (10%) Query: 103 VRRLEAQLQQARAVALRSDNEAQRGERLRTNNAISAELADSRTTSAQ----------EAK 152 + + Q+ + V ++ + + + + I + + + + + Sbjct: 249 IAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTT 308 Query: 153 AGVAAIQAQLDLARLNLSFTRVTAPITGRVSRAEI-TAGNIVTADVTALTSVVSTDKVY 210 + + +L + + AP++ +V + ++ T G +VT L +V D Sbjct: 309 DNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA-ETLMVIVPEDDTL 366
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.6 bits (77), Expect = 0.002 Identities = 26/157 (16%), Positives = 46/157 (29%), Gaps = 22/157 (14%) Query: 483 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQSSTTEIEALIKSLQDGTGAA 542 Q ++ RA V + ++ + ++ L A Sbjct: 197 TWQNQKYQKELNLDKKRAERLT-----VLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 543 SELMNASRQRTEGTVALARQAEESLLEITHSIGTIEQMSQQISAAAEEQSAVTDEINRSV 602 ++ + E L +EQ+ +I +A EE VT Sbjct: 252 HAVLEQENKYVEAVNELRVY-----------KSQLEQIESEILSAKEEYQLVTQLFKN-- 298 Query: 603 ISVRDIADQSATATEQSAASTVELARLGSNLQDMVAR 639 +I D+ T+ T+ELA+ Q V R Sbjct: 299 ----EILDKLRQTTDNIGLLTLELAKNEERQQASVIR 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 4e-19 Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 1/123 (0%) Query: 6 TETPILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRD 65 T IL+ +D+ + +++ L AGY SN + + A L++ D+++P + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 66 GMDICRELRSFSA-VPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRR 124 D+ ++ +P+++++A+ + + + GA DY+ KPF E++ + L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 125 TSS 127 Sbjct: 122 PKR 124
>PF06580#Sensor histidine kinase Length = 349 Score = 35.2 bits (81), Expect = 4e-04 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 23/99 (23%) Query: 357 LISNLLENSVRY----TDAGGTVQVRAAMRDDEVCIEVMDSGPGVDPAQLPRLFERFYCG 412 L+ L+EN +++ GG + ++ + V +EV ++G Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK------------- 305 Query: 413 ETSRNRASGGAGLGLA-ICHSIALAHGGSLSAEHSPTGG 450 G GL + + + +G + S G Sbjct: 306 -----NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQG 339
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.5 bits (113), Expect = 6e-08 Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 11/193 (5%) Query: 69 EIRPQVSGIVQQRLFVEGADVKAGQPLYQLDSATYQAALAESQATLAKSRATLKSAQA-- 126 EI+P + IV++ + EG V+ G L +L + +A ++Q++L ++R Q Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 127 TARRDIGLAKIDAISQ---QDKEDAEASLLTAAAEVKVAEADVQTARINLAYTRITAPIS 183 + L ++ + Q+ + E LT+ + + + Q + L + A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 184 GRIETSTVTPGALVVAQQDTALTTVQQL-DPIYV---DVTQSTTELLRLKRDLASGKLQT 239 + V + L L + V + + + +L K Q Sbjct: 218 TVLARINRYENLSRVEKSR--LDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQL 275 Query: 240 NGDGQARITLKLD 252 ++ K + Sbjct: 276 EQIESEILSAKEE 288 Score = 42.5 bits (100), Expect = 2e-06 Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 7/174 (4%) Query: 50 RSQALTTELAGRTQAFMVAEIRPQVSGIVQQRLFVEGADVKAGQPLYQLDSATYQAALAE 109 ++Q EL + + +++ VE + + L + A L + Sbjct: 199 QNQKYQKELNLDKKRAERLTVLARINRYENL-SRVEKSRLDDFSSLLHKQAIAKHAVLEQ 257 Query: 110 SQ--ATLAKSRATLKSAQATARRDIGLAK--IDAISQQDKEDAEASLLTAAAEVKVAEAD 165 KS +I AK ++Q K + L + + + Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLE 317 Query: 166 VQTARINLAYTRITAPISGRIET-STVTPGALVVAQQDTALTTVQQLDPIYVDV 218 + + I AP+S +++ T G VV +T + V + D + V Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGG-VVTTAETLMVIVPEDDTLEVTA 370 Score = 34.0 bits (78), Expect = 9e-04 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 47 VQPRSQALTTELAGRTQAFMVAEIRPQVSGIVQQ-RLFVEGADVKAGQPL 95 LT ELA + + IR VS VQQ ++ EG V + L Sbjct: 307 TTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETL 356
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1184 bits (3065), Expect = 0.0 Identities = 616/1034 (59%), Positives = 771/1034 (74%), Gaps = 6/1034 (0%) Query: 1 MARFFIDRPIFAWVIAICIMFAGGLSISQLPLEQYPNIAPPTVKISATYTGASAKTVEDS 60 MA FFI RPIFAWV+AI +M AG L+I QLP+ QYP IAPP V +SA Y GA A+TV+D+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQQMKGLDRLTYMSASSSSAGSASINLTFAAGTDPDVAQMQVQNKLQQAESRLPQ 120 VTQVIEQ M G+D L YMS++S SAGS +I LTF +GTDPD+AQ+QVQNKLQ A LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 SVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIGDYISSTLLDQLSRVDGVGDVQTLGS 180 VQ +G++V K SS +LM+ SDN T I DY++S + D LSR++GVGDVQ G+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 GYAMRIWLDPARLEKYALMPSDISSALEAQNTEVSAGQLGALPAVTGQQLNATISGRSKL 240 YAMRIWLD L KY L P D+ + L+ QN +++AGQLG PA+ GQQLNA+I +++ Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANAL 300 + PE+F V ++ +SDG+VV L+DVARVELG E+Y++ + +NG+PAA +GI+LA+GANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 SVGEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLF 360 +AIKAKL EL+PF+P M++ + YDTTPFV LSI EVVK+L EAI+LV L+M+LF Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKV--LYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 361 MQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENVER 420 +QN+RATLIP I VPVVLLGTF +LA FGYSINTLTMF MVLAIGLLVDDAIVVVENVER Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 421 VMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 480 VM E++L P EAT KSM +I AL+GIA+VLSAVFIPMAFF GSTG IYRQFS+TIVSAM Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 481 LLSVLVAMTLTPALCATMLKASDAQLHAQRGGFFGRFNRSFDRSADRYQRGVSGVINHRG 540 LSVLVA+ LTPALCAT+LK A+ H +GGFFG FN +FD S + Y V ++ G Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 541 RALLVYVLVLVTMAVGYVSLPTSFLPDEDQGALMAQIQLPVGATDSRTQAVMRQFETYML 600 R LL+Y L++ M V ++ LP+SFLP+EDQG + IQLP GAT RTQ V+ Q Y L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 601 K--QPEVEALISISGLGMGGNSQNTARAFIKLKDWSERSGKGQGAAQVAQRATLALASIG 658 K + VE++ +++G G +QN AF+ LK W ER+G A V RA + L I Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 659 DASVFVMQPPAVRGLGQSSGFDVQLKDLGGVGHEALVAAREQFIELAKKDPS-LLGVRSN 717 D V PA+ LG ++GFD +L D G+GH+AL AR Q + +A + P+ L+ VR N Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 718 GLDDTPQLKVTIDDRKAGALSLSTSDINSTLSTALGGSYINDFLNQGRVKKVYVQGEAAS 777 GL+DT Q K+ +D KA AL +S SDIN T+STALGG+Y+NDF+++GRVKK+YVQ +A Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 778 RMQSADLNHWFVRNSNDEMVPFSSFARSSWSYGSPLLERYNGNSSLEVVGDPAPGVSSGT 837 RM D++ +VR++N EMVPFS+F S W YGSP LERYNG S+E+ G+ APG SSG Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 838 AMDAVEAIIKQLPEGIGYEWTGQSYQLRLSGSQAPMLYAVSVLFVFLCLAALYESWSVPF 897 AM +E + +LP GIGY+WTG SYQ RLSG+QAP L A+S + VFLCLAALYESWS+P Sbjct: 839 AMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 898 SVMLVVPLGVVGAVLATRLSGLSNDVYFQVGLLTTVGLAAKNAILIVEFAKHLQE-QGKS 956 SVMLVVPLG+VG +LA L NDVYF VGLLTT+GL+AKNAILIVEFAK L E +GK Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 957 LRDATLIAARQRLRPILMTSLAFMFGVLPLALSTGAGSAGRNAIGTGVLGGMFSATVLGI 1016 + +ATL+A R RLRPILMTSLAF+ GVLPLA+S GAGS +NA+G GV+GGM SAT+L I Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1017 FLVPLFFVEVRRRF 1030 F VP+FFV +RR F Sbjct: 1019 FFVPVFFVVIRRCF 1032
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.6 bits (131), Expect = 1e-11 Identities = 26/71 (36%), Positives = 35/71 (49%) Query: 1 MRVTKAQAQANRAHIVETASVQFREHGFDGVGVADLMAAAGFTHGGFYKHFGSKSDLMAE 60 R TK +AQ R HI++ A F + G + ++ AAG T G Y HF KSDL +E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 SAACAISRTVE 71 + S E Sbjct: 62 IWELSESNIGE 72
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 89.2 bits (221), Expect = 4e-21 Identities = 78/428 (18%), Positives = 170/428 (39%), Gaps = 26/428 (6%) Query: 2 TTPSHPALTFKQALLAMLGISLVLMLSALDQTVIGNALPSIVAELDGFE-LYAWVATGYL 60 T+ S L Q L+ + +S S L++ V+ +LP I + + WV T ++ Sbjct: 3 TSYSQSNLRHNQILIWLCILSF---FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFM 59 Query: 61 LASIVTIPIFGRLGDFYGRKPFVLAATVIFTVASVVCALADSML-VLVIGRALQGVGGGM 119 L + ++G+L D G K +L +I SV+ + S +L++ R +QG G Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAA 119 Query: 120 LIGTAFACVPELFPDPRQRLRWQVLLSAMFSVVNAIGPGLGGYLSGEFGWRSVFWLNLPL 179 V P R + L+ ++ ++ +GP +GG ++ W + L +P+ Sbjct: 120 FPALVMVVVARYIP-KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPM 176 Query: 180 -GVIALFFAWRFLPWYRPPTAGAIR--LDWIGAVLIVLSLGSLQLFVEWLGQRSLAISLL 236 +I + F + I+ D G +L+ + + LF + S+ Sbjct: 177 ITIITVPFLMKL-----LKKEVRIKGHFDIKGIILMSVGIVFFMLFTT-------SYSIS 224 Query: 237 CGAITVIALTGLWFRERRCAFALLPAGLFANRSIRLLFIMSLLAGAIMFTLLFYLPLLLQ 296 ++V++ R+ + GL N + + + + + +P +++ Sbjct: 225 FLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMK 284 Query: 297 GSYGYSPQDAG-LLLTPLALSITLGAIVNSRIVTRLANPNWLPIGGFVALSIACIALALV 355 + S + G +++ P +S+ + + +V R L G LS++ + + + Sbjct: 285 DVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVL-NIGVTFLSVSFLTASFL 343 Query: 356 GLHAGFTTLLGLILLAGLGLGFILLNLTVFTQTLAERQFLGIATALTQSLRLVGGLLGTA 415 + + ++ + G GL F ++ + ++Q G +L + G A Sbjct: 344 LETTSWFMTIIIVFVLG-GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIA 402 Query: 416 AMGVLVKL 423 +G L+ + Sbjct: 403 IVGGLLSI 410
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.002 Identities = 8/29 (27%), Positives = 14/29 (48%) Query: 133 VTAEKAGVVTAILVANGEEVQAGQALFSI 161 + + +V I+V GE V+ G L + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKL 127
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 30.0 bits (67), Expect = 0.016 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Query: 116 KVAAKRAMREAGVPCVPGP-DTSMPADPLGI 145 ++AA A+RE GV VPG D P P G+ Sbjct: 54 RIAAVHALREVGVRTVPGMGDKRQPLWPDGL 84
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.3 bits (63), Expect = 0.010 Identities = 7/31 (22%), Positives = 13/31 (41%) Query: 105 VRSQQAGRVTRFLAAEHERVGYGQPLIELEE 135 ++ + V + E E V G L++L Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTA 129
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 77.8 bits (191), Expect = 4e-19 Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 25/253 (9%) Query: 7 KTALVTGASSGIGEAVVERLCAEGLQVHALARSADKLAALAQRTGCIA-----HAIDVTD 61 K A +TGA+ GIGEAV L ++G + A+ + +KL + A DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 62 LAGLTA-----LFQAHQFDVVVNNAGVDRPGSLLKADAEGIDLLVDVNLRAVLQIARLSL 116 A + + D++VN AGV RPG + E + VN V +R Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 117 PGMVERDSGHIINISSIAAAYNFGGNSTYHATKAAVSMLSRQLRIDAFGKRVRVTEICPG 176 M++R SG I+ + S A + Y ++KAA M ++ L ++ +R + PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 177 RVATDIFAHVHGD---SEEVRKRFIEGYEL--PVAK-----DIADAIAYVIAAPIAVNIG 226 TD+ + D +E+V K +E ++ P+ K DIADA+ ++++ G Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG----QAG 244 Query: 227 HMEITPTLQVPGG 239 H+ + L V GG Sbjct: 245 HITMH-NLCVDGG 256
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 139 bits (351), Expect = 7e-38 Identities = 71/255 (27%), Positives = 111/255 (43%), Gaps = 28/255 (10%) Query: 170 AQVNIRVRFAEVSRSELLRYGVNWNAL------FNNGTFSFGLLTGGALAADAAG----- 218 QV + AEV ++ L G+ W F N GA + G Sbjct: 345 PQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSS 404 Query: 219 -----GASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMTGQTASFLAGGEVA 273 + N I+AG GN +L AL S+ ++LA P+I + A+F G EV Sbjct: 405 LASALSSFNGIAAGFYQGN--WAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEV- 461 Query: 274 VPVPVNREVVG-------IEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVN 326 PV + +E K G+ L P + + L++ EVSS+ + + Sbjct: 462 -PVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSS 520 Query: 327 GYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRSKRFQ 386 +F R + V VGSG+T + GL + S DKVP+LGD+P++G LFRS + Sbjct: 521 DLGA-TFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKK 579 Query: 387 RNETELVILITPYLV 401 ++ L++ I P ++ Sbjct: 580 VSKRNLMLFIRPTVI 594
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 35.7 bits (82), Expect = 8e-05 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 3/117 (2%) Query: 112 QRALELKADDPDALLGLGTAQLRQGKLERAITALTQAADAL--QQPQAWNRLGIAHILSG 169 E+ +D + L L Q + GK E A QA L + + LG G Sbjct: 26 AMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVF-QALCVLDHYDSRFFLGLGACRQAMG 84 Query: 170 QADAAQSAFGTSLRLAPNDLDIRCNLALAYALGDDDQKALETIRSVSQSPLAQPRHQ 226 Q D A ++ + + + A + +A + + + + Sbjct: 85 QYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFK 141 Score = 34.9 bits (80), Expect = 2e-04 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 7/114 (6%) Query: 107 AERAYQRALELKADDPDALLGLGTAQLRQGKLERAITALTQAADA-LQQPQAWNRLGIAH 165 A + +Q L D LGLG + G+ + AI + + A +++P+ Sbjct: 55 AHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECL 114 Query: 166 ILSGQADAAQSAFGTSLRLAPND-----LDIRCNLALAYALGDDDQKALETIRS 214 + G+ A+S + L + L R + L A+ + E + + Sbjct: 115 LQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLE-AIKLKKEMEHECVDN 167
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 96.5 bits (240), Expect = 2e-25 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 3/168 (1%) Query: 9 PVSKLLMLILLCLLSGVLKAASERQPDWFSEPYAYVLVDQDIRGALTEFGQHLGLIVVFS 68 P+ +L L + + ++ DW PY YV + +R LT+FG + VV S Sbjct: 4 PLHSFFKRVLTGTLLLLSSYSWAQELDWLPIPYVYVAKGESLRDLLTDFGANYDATVVVS 63 Query: 69 EKVRGNARGTVRGEDAGEFLTRLCDANQLSWYFDGNVLHIAGADEVATRVFDLQGPRLEE 128 +K+ G ++ +FL + L WY+DGNVL+I EVA+R+ LQ E Sbjct: 64 DKINDKVSGQFEHDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAE 123 Query: 129 LQRYMARLEVSGQPMSSRVSPDSDSLFVSGPPAWL---AQIQHHVDRQ 173 L++ + R + R + ++VSGPP +L Q +++Q Sbjct: 124 LKQALQRSGIWEPRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQQ 171
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 76.2 bits (187), Expect = 6e-18 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 7/164 (4%) Query: 27 LYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQSF 86 L++NL +++ A++A L + IP + + + V + + L GLP Sbjct: 53 LFSNLSDQDGGAIVAQLTQMNIPY--RFANGSG-AIEVPADKVHELRLRLAQQGLP--KG 107 Query: 87 SNMG-EVFKGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKRV 145 +G E+ S E+ AL EL+ T+ + + SARVH+ +P L R Sbjct: 108 GAVGFELLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVRE 167 Query: 146 ISPSSASVLVRFDP-RTDINVLIPQIKTLVANGISGLGYDGVSV 188 SASV V +P R I + LV++ ++GL V++ Sbjct: 168 QKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTL 211
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 72.0 bits (176), Expect = 1e-16 Identities = 69/264 (26%), Positives = 105/264 (39%), Gaps = 45/264 (17%) Query: 59 EQAWLSWIEPLE-------ALSGEPVQ------VLPWPA---HPLENPL------RLALE 96 E+ W +WI+P + AL+G V V+PW A P E P+ RL +E Sbjct: 47 EKRWSAWIKPGDWLEHVSPALAGAAVSAGAEHLVVPWLAATERPFELPVPHLSCRRLCVE 106 Query: 97 VRPDEGQAQTLEIHLNADSARHVIAL--LDRNAVTRPQPLDALVLTLSVEAGQAPLTTTE 154 P G A L+ S R + L L L G + + Sbjct: 107 -NPVPGSALPEGKLLHIMSDRGGLWFEHLPELPAVGGGRPKMLRWPLRFVIGSSDTQRSL 165 Query: 155 LHSLVPGDVVMLDTLADTQVLL---RLGKRYRTVARHQGETLEWLGPLRTVSPHYVSHTF 211 L + GDV+++ T +V +LG R ETL+ + H Sbjct: 166 LGRIGIGDVLLIRTSR-AEVYCYAKKLGHFNRVEGGIIVETLD------------IQHI- 211 Query: 212 NRNDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVD 271 + + T+ ++ L++LP+ L L +TLA+L M LL L + V+ Sbjct: 212 ---EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVE 268 Query: 272 LMVNGRRIGRGELVSIGDGLGVRL 295 +M NG +G GELV + D LGV + Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEI 292
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 208 bits (532), Expect = 2e-70 Identities = 83/217 (38%), Positives = 130/217 (59%), Gaps = 7/217 (3%) Query: 7 NLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVY 66 N I +I ++A L+P + + T F+K S+V ++RNALG+QQ P N+ L G+AL+LS++ Sbjct: 3 NDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMF 62 Query: 67 VTTPLIGDMYREVQGRDLSLQNVQQLEELGSALCPTLQAHLSKFANESERGFFVQATETI 126 V P++ D Y + D++ ++ L + + +L K+++ FF A Sbjct: 63 VMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKR 122 Query: 127 WSPEA-------RADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMA 179 E + ++ + L+PA+ SE+ AF+IGF LY+PF+VVDL+VS+VL+A Sbjct: 123 QYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLA 182 Query: 180 MGMSMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216 +GM M+SP IS P+K+ LFVAL GW+ L GLIL Y Sbjct: 183 LGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQY 219
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 54.8 bits (132), Expect = 1e-13 Identities = 29/76 (38%), Positives = 43/76 (56%) Query: 7 LSLMNKALMTVLLLSAPALVVAIVVGLSVGLLQALPQIQDQTLPQVVKLVAVLLVIVFVG 66 + NKAL VL+LS +VA ++GL VGL Q + Q+Q+QTLP +KL+ V L + + Sbjct: 5 VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64 Query: 67 PLLAGQVAELGNQVLD 82 + G QV+ Sbjct: 65 GWYGEVLLSYGRQVIF 80
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 131 bits (332), Expect = 3e-39 Identities = 50/256 (19%), Positives = 106/256 (41%), Gaps = 5/256 (1%) Query: 11 EIAYPVISSASLAASRAMGVVIITPAFNRLGLTGMIRGCVAVAISVPMILPVFSAFTSMP 70 E ++ R + ++ P + + ++ +A+ I+ + + + + Sbjct: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 Query: 71 EHSGFFLAGLMIKELLIGLLIGLLFGIPFWAAEVAGELIDLQRGSTMEQLVDPLGQGEAS 130 FF L ++++LIG+ +G F A AGE+I LQ G + VDP Sbjct: 67 S---FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123 Query: 131 VMATLLTVMLITLFFMSGGFILMVDGYYHSYQLWPVTEFTPLFSSAALTSILAILDQVMR 190 V+A ++ ++ + LF G + ++ ++ P+ +S A ++ + Sbjct: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPI--GGEPLNSNAFLALTKAGSLIFL 181 Query: 191 IGVLMVAPLLIAMLITDLMLAYLSRMAPSLHIFDLSLPVKNLFFAVLMVVYIGFLIPVMI 250 G+++ PL+ +L +L L L+RMAP L IF + P+ LM + + P Sbjct: 182 NGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241 Query: 251 DQLAQFRGTVEVLKTL 266 ++ + + + Sbjct: 242 HLFSEIFNLLADIISE 257
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 234 bits (599), Expect = 5e-77 Identities = 105/339 (30%), Positives = 186/339 (54%), Gaps = 1/339 (0%) Query: 5 SEEKSQPASDKKLRDARKKGQVAKSQELVSGMVILMCTLCISVLLPKARAQVEALIDLTA 64 S EK++ + KK+RDARKKGQVAKS+E+VS +I+ + + L L+ + A Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPA 61 Query: 65 LIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIVTMRGVVFSIEPIQPDIK 124 PF++ ++D+ + P++ V I +++V G + S E I+PDIK Sbjct: 62 EQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVV-QYGFLISGEAIKPDIK 120 Query: 125 RINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSRCGEGCIESTF 184 +INP EG KRIF++++L+EFLK ++KVVLL++ +++ + L L++ CG CI Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 185 YLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDGDPMIKRERQR 244 +L+ L+ F+++ D + + + +E+KMS E KRE K+++G P IK +R++ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 245 QRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRGETPVPIVVCRASSQDSSTLLAEAL 304 +E+Q+ + + R+S+V+ + +G+ Y RGETP+P+V + + T+ A Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 305 SLGIARWPDASLAEMIARRSVAGDPVPENTFQAVADALV 343 G+ LA + ++ +P +A A+ L Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLR 339
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.7 bits (69), Expect = 0.046 Identities = 45/264 (17%), Positives = 96/264 (36%), Gaps = 27/264 (10%) Query: 795 SFDDLKKAFGKEGSEALDEEKVKALIDEISKSNPELLMNADGKPATSDQILGVFRGNWDL 854 S +DL + + G E +EK + + + ++ A+ +++ + +F D Sbjct: 63 SLNDLVRTADELGIEVQYDEK-----NGTAITK-QVFGTAEKLIGLTERGVTIFAPQLDK 116 Query: 855 LRQGTKSISE-LGLFSDNSSIKAASGAGVLHGVS---GLFMAGITIAKGANGAGALTDRQ 910 L Q + LG ++N G+L G ++ + I + + + Sbjct: 117 LLQKYQKAGNILGGGAENIGDNLGKAGGILSTFQNFLGTALSSMKIDELIKKQKSGGNVS 176 Query: 911 IVDITTGSVQSATLLVE---GGIKNVTTMFKDI-------KDVLEPDVYKDITTNLSKLE 960 ++ S++ LV+ NV + + + + + + NL L+ Sbjct: 177 SSELAKASIELINQLVDTVASLNNNVNSFSQQLNTLGSVLSNTKHLNGVGNKLQNLPNLD 236 Query: 961 NAAKGLGGLAGVAAGAYGIFD-GVKSIRRGELVAGGMSITAGSLGAMAGLASA---AEGA 1016 N GL ++G+ + F A G+ +T LG + S A+ A Sbjct: 237 NIGAGLDTVSGILSAISASFILSNADADTRTKAAAGVELTTKVLGNVGKGISQYIIAQRA 296 Query: 1017 AGVLQLTGSVVRALPLLAGSLGIA 1040 A L + + L+A ++ +A Sbjct: 297 AQGLSTSAAAA---GLIASAVTLA 317
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.0 bits (122), Expect = 2e-10 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 18/125 (14%) Query: 21 PKVLLVEDETMLAMLMEMMLEDLGFATAYHASSLGEGIEYARNGDYDLAILDINIIGGNS 80 +L+ +D+ + ++ L G+ S+ + GD DL + D+ + N+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 81 FPIAAAIAHR--GIPFMFCSGYG---------RLGIPEVWVDRRCVAKPFSAEQLNEALS 129 F + I +P + S G + + KPF +L + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDY------LPKPFDLTELIGIIG 116 Query: 130 ELLQA 134 L Sbjct: 117 RALAE 121
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.5 bits (76), Expect = 0.001 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 9/56 (16%) Query: 32 VVFVGPSGCGKSTLLRLIAGLEEVTSGTIELDGRDITQVTPAKRDLAMVFQTYALY 87 VV G G GKSTL+ + GL+ + ++ +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY 645
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 39.3 bits (91), Expect = 2e-05 Identities = 103/434 (23%), Positives = 160/434 (36%), Gaps = 52/434 (11%) Query: 1 MKNSAKLLLASSVLSTCFVFSGSATA----GTVTIATVNNSDMIRMQRLSKTFEEKHPDI 56 +K A++L S++ T +FS SA A G + I + + + K FE+ D Sbjct: 3 IKTGARILALSAL--TTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEK---DT 57 Query: 57 KLNWVVLEENVLRQRLTTDIATKGGQFDVLTIGMYEASLWGQKGWLQEMKDLPASYELDD 116 + V + L ++ AT G D++ + Q G L E+ P D Sbjct: 58 GIKVTVEHPDKLEEKFPQVAATGDGP-DIIFWAHDRFGGYAQSGLLAEIT--PDKAFQDK 114 Query: 117 VFPSVRDGLSVDGKLFALPFYAEASITYYRTDLFKAAGLTMPERP-IWTQIAEFAGKLTD 175 ++P D + +GKL A P EA Y DL +P P W +I +L Sbjct: 115 LYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL-------LPNPPKTWEEIPALDKELKA 167 Query: 176 KSKEQYGICLRGKAGWGENMALITTLANAYGARWFDEQWTPQFDQPEWKNALNFYVNTMK 235 K K L+ +A A Y +D + D K L F V+ +K Sbjct: 168 KGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIK-DVGVDNAGAKAGLTFLVDLIK 226 Query: 236 QSGPPGASSNGFNENLALFNSGKCAIWVDASVAGSFVTDKKQSKVADSVGFTYAPHEVTD 295 + E A FN G+ A+ ++ A S + SKV + G T P Sbjct: 227 NKHMNADTDYSIAE--AAFNKGETAMTINGPWAWSNI---DTSKV--NYGVTVLPTFKGQ 279 Query: 296 KGSSWLYSWSLAIPTSAKNTKDAAEFTQWATSKEYAKLVADTDGVSNVPPGTRASTYTDE 355 ++ S I ++ N + A EF + L+ D G A Sbjct: 280 PSKPFVGVLSAGINAASPNKELAKEFLE-------NYLLTD--------EGLEA------ 318 Query: 356 YKKAAPFANITLESLKKANPKSPSLKTV---PYVGIQLVTIPEFQAIGTSVGQQFSAALI 412 K P + L+S ++ K P + G + IP+ A +V A Sbjct: 319 VNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 378 Query: 413 GQSTVDQALQKAQT 426 G+ TVD+AL+ AQT Sbjct: 379 GRQTVDEALKDAQT 392
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 4e-16 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Query: 4 TARTILVVEDDAIVRMLIVDVLEELEYKVLEAEDATSALTFVVDDTRHIDLLMTDQGLPD 63 T TILV +DDA +R ++ L Y V +A + ++ DL++TD +PD Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG--DGDLVVTDVVMPD 59 Query: 64 MKGTALAKKVIELRPQLPVLFASGYSENIDVPPGM-----HSIGKPFSIDQLRDKVKSIL 118 L ++ + RP LPVL S + + + KPF + +L + L Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 119 D 119 Sbjct: 120 A 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.8 bits (189), Expect = 2e-16 Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Query: 1047 KILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDGY 1106 ILV DDD L AL G V I N + D DLV+ DV+MP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDENAF 63 Query: 1107 EATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIR 1161 + I+K LP++ ++A+ + + G+ DYL KP DL L +I Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Score = 70.2 bits (172), Expect = 2e-14 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 5/131 (3%) Query: 776 QRRCILVIEDEVRFAQILFDLAHELGYECLVAHAADEGFNLASRYTPDAILLDMRLPDHS 835 ILV +D+ +L GY+ + A + + D ++ D+ +PD + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 836 GLTVLQRLKELAPTRHIPVHVISVE---DRQEAALHMGAIGYAVKPTTREELKDVFAKLE 892 +L R+K+ P +PV V+S + A GA Y KP EL + + Sbjct: 62 AFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 893 AKLTQKVKRIL 903 A+ ++ ++ Sbjct: 120 AEPKRRPSKLE 130 Score = 63.7 bits (155), Expect = 2e-12 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 901 RILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGNE 960 IL+ +DDA R + + + ++ A + D ++ D+ +PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 961 LLKRMSTEDICAFPPVIVYTG 981 LL R+ PV+V + Sbjct: 65 LLPRIKKAR--PDLPVLVMSA 83
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.3 bits (167), Expect = 1e-14 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 19/169 (11%) Query: 7 AKLLIVDDLPENLLALEALIKRGDRLVYKALSADEALSLLLQHEFALAILDVQMPGMNGF 66 A +L+ DD L + R V +A + + L + DV MP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 67 ELAEMMRSTEKTKSIPIVFVSAAGRELNYAFKGYESGAVDFLHKPLDIHAVKSKVNVFVD 126 +L ++ +P++ +SA A K E GA D+L KP D+ Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQN-TFMTAIKASEKGAYDYLPKPFDL------------ 108 Query: 127 LYRQRKAMKLQVEELEHSRQEQEALLKRLQSTQGELEHAIRMRDDFMSI 175 + + + L ++ L Q + + M++ + + Sbjct: 109 ----TELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL 153
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.1 bits (156), Expect = 5e-15 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 10/121 (8%) Query: 26 VLIVEDEPLILMLLADYLSGEGYRVLKAENGEQAFEILATKPHLDLMITDYRLPGGVSGV 85 +L+ +D+ I +L LS GY V N + +A DL++TD +P + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDE-NAF 63 Query: 86 QIAEPAVMLRPELKVIFISGYPAEILDSGSPI-ALKAPI---LAKPFTMETLHSRIQELL 141 + RP+L V+ +S + I A + L KPF + L I L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQN----TFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 142 A 142 A Sbjct: 120 A 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.2 bits (172), Expect = 9e-15 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Query: 535 TVLIVEDDPAVRTLVSEVLSELGYTFIEAGEALDAVPILESGQRIDLLISDVGLPGMNGR 594 T+L+ +DD A+RT++++ LS GY A + +G DL+++DV +P N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDENAF 63 Query: 595 QLAEIARQLRPGLKVLFITGYAE----HAAVRGGFLDTGMQLITKPFAFDQLTSKVR 647 L ++ RP L VL ++ A G D + KPF +L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDY----LPKPFDLTELIGIIG 116 Score = 43.7 bits (103), Expect = 2e-06 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 5/116 (4%) Query: 2 RILDEAGYLATVAHDLFELVKELSSGAGLAIIADEALRNSDIKPLLDLISRQPAWSDLPI 61 + L AGY + + L + +++G G ++ D + + + LL I + A DLP+ Sbjct: 21 QALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKK--ARPDLPV 78 Query: 62 VLMTHHGGPDHNPSARMGNLLGNVTFLERPFHPATLVSLVVTAVRGRRRQYEARAR 117 ++M+ A G +L +PF L+ ++ A+ +R+ Sbjct: 79 LVMSAQNTFMTAIKASE---KGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLED 131
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 129 bits (324), Expect = 2e-38 Identities = 89/253 (35%), Positives = 133/253 (52%), Gaps = 11/253 (4%) Query: 9 LDGKVAFVSGASRGIGEAIARLLAQQGAHVVVSSRKLDGCQAVADAIISEGGKATAIACH 68 ++GK+AF++GA++GIGEA+AR LA QGAH+ + + V ++ +E A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 69 IGEMEQITSVFAQIREQFGRLDILVNNAAT-NPQFCNVLDTDLSAFQKTIDVNIRGYFFM 127 + + I + A+I + G +DILVN A P + L + ++ T VN G F Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDE--EWEATFSVNSTGVFNA 123 Query: 128 SVEAGKLMREGGGGSIINVASINAVSPGAYQGVYSMTKAAVVNMTKVFAKECAEFGIRCN 187 S K M + GSI+ V S A P Y+ +KAA V TK E AE+ IRCN Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 188 ALLPGLTDTRFASALVKND----AILNMALAQ----IPLKRVAAPSEMAGAVLYLASAAS 239 + PG T+T +L ++ ++ +L IPLK++A PS++A AVL+L S + Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 240 SYTTGVALNVDGG 252 + T L VDGG Sbjct: 244 GHITMHNLCVDGG 256
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.9 bits (88), Expect = 6e-05 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 12/125 (9%) Query: 103 ALGTVTAM-NTINVRSRVAGELVKLYFQEGQMVKAGDLLAEIDP-------RSYQVALQQ 154 A G +T + ++ + ++ +EG+ V+ GD+L ++ Q +L Q Sbjct: 86 ANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQ 145 Query: 155 AEGTLATNQALLKNAQLDVQRYRGLFAE---DSIAKQTLDTAESLVHQYKGTIKTNQAAV 211 A Q L ++ +L+ L E +++++ + SL+ + T + NQ Sbjct: 146 ARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ-NQKYQ 204 Query: 212 ADAKL 216 + L Sbjct: 205 KELNL 209 Score = 35.2 bits (81), Expect = 4e-04 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 152 LQQAEGTLATNQALLKNAQLDVQRYRGLFAEDSIAK--QTLDTAESLVHQYKGTIKTNQA 209 L+ + L ++ + +A+ + Q LF + + K QT D L T + Sbjct: 268 LRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL---------TLEL 318 Query: 210 AVADAKLSLDFTRIRAPIAGRV-GLKQLDVGNLVAANDTTALVVITQTQPISVAFTLPEK 268 A + + + IRAP++ +V LK G +V +T +V++ + + V + K Sbjct: 319 AKNEERQQA--SVIRAPVSVKVQQLKVHTEGGVVTTAETL-MVIVPEDDTLEVTALVQNK 375 Query: 269 DLSKV 273 D+ + Sbjct: 376 DIGFI 380
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 822 bits (2125), Expect = 0.0 Identities = 292/1037 (28%), Positives = 516/1037 (49%), Gaps = 28/1037 (2%) Query: 3 MSRLFILRPVATTLSMLAIVLAGLIAYTLLPVSALPQVDYPTIRVMTLYPGASPQVMTSS 62 M+ FI RP+ + + +++AG +A LPV+ P + P + V YPGA Q + + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTAPLERQFGQMPGLTQMASTS-SGGASVITLRFSLEINMDVAEQQVQAAINAATNLLPT 121 VT +E+ + L M+STS S G+ ITL F + D+A+ QVQ + AT LLP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 DLPAPPVYNKVNPADTPVLTLAITS--KTMLLPKLNELVDTRMAQKISQISGVGMVSIAG 179 ++ + + + ++ S +++ V + + +S+++GVG V + G Sbjct: 121 EVQQQGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 GQCQAVRIKVNPEALAANSLNLSDVRNLIGASNVNQPKGNFDGPTRVS------MLDAND 233 Q A+RI ++ + L L DV N + N G G + + A Sbjct: 180 AQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QLKSPEEYANLIL-AYKDGAPLRLKDVAEIVDGAENERLAAWANRSQAVLLNIQRQPGAN 292 + K+PEE+ + L DG+ +RLKDVA + G EN + A N A L I+ GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 VIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDVQHELLIAIILVVLVTFLF 352 ++ IKA L + P G+ V+ D T ++ S+ +V L AI+LV LV +LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGFVVDDAIVMLENISR 412 L+ AT+IP+IAVP+ L+GTF ++ G+S+N LT+ M +A G +VDDAIV++EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-EEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMADVVGRLFREFAITLAVAI 471 + E+ P +A K QI L+ + + L AV IP+ F G ++R+F+IT+ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 LISLVVSLTLTPMMCARLLKREPKE--EEQSRFYRASGAWIDWLIDIYAGGLRWVLRHQP 529 +S++V+L LTP +CA LLK E E + F+ D ++ Y + +L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 530 LTLLAALATLALTVLLYIVVPKGFFPVQDTGVIQGISEAPQSVSFAAMSQRQQALADIIL 589 LL +A V+L++ +P F P +D GV + + P + + + D L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 590 KDPA--VVSLSSYIGVDGDNATLNSGRLLINLKPHSERD---LTASEVIQRLQPEVDKLS 644 K+ V S+ + G N+G ++LKP ER+ +A VI R + E+ K+ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 645 DIRLFMQPVQDLTIEDRVSRTQYQFSM---SSPDAELLTLWSERLVEALGKR-SELTDVA 700 D F+ P I + + T + F + + + LT +L+ + + L V Sbjct: 659 D--GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 701 SDLQDKGLQVYLNIDRDAASRVGVTVANITDALYDAFGQRQISTIYTQASQYRVVLQAAS 760 + + Q L +D++ A +GV++++I + A G ++ + ++ +QA + Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 761 GSELGPAALEQIHVKTTDGAQVKLSSLARVEQRQAQLAIAHLGQFPAVMMSFNLAPGVAL 820 + P +++++V++ +G V S+ + P++ + APG + Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 821 GKAVQVIEQVEQDIGMPIGVQTQFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYESY 880 G A+ ++E + +P G+ + G + + S + L+ + V +++ L LYES+ Sbjct: 837 GDAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESW 894 Query: 881 IHPITILSTLPSAAVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALDAERN 940 P++++ +P VG LLA + + ++G++ IG+ KNAI++++FA D Sbjct: 895 SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEK 954 Query: 941 RGVAPETAIYEAALLRFRPILMTTLAALFGAIPLMLASGSGAELRQPLGLVMVGGLLVSQ 1000 G A A +R RPILMT+LA + G +PL +++G+G+ + +G+ ++GG++ + Sbjct: 955 EGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSAT 1014 Query: 1001 VLTLFTTPVIYLYFDRL 1017 +L +F PV ++ R Sbjct: 1015 LLAIFFVPVFFVVIRRC 1031
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 796 bits (2058), Expect = 0.0 Identities = 286/1033 (27%), Positives = 507/1033 (49%), Gaps = 30/1033 (2%) Query: 7 FIRRPVATVLLSLAILLLGAVSFRLLPVAPLPNMDFPVIVVSASLAGASPEVMASTVATP 66 FIRRP+ +L++ +++ GA++ LPVA P + P + VSA+ GA + + TV Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 67 LERSLGSIAGVNTMTSNS-SQGTTRIILQFDLNRDINGAAREVQAAINASRNLLPSGMRS 125 +E+++ I + M+S S S G+ I L F D + A +VQ + + LLP ++ Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 126 MPTYKKVNPSQAPIMVLSMTST--VLEKGQLYDLASTILSQSLSQVSGVGEVQIGGSSLP 183 S + +MV S + + D ++ + +LS+++GVG+VQ+ G+ Sbjct: 125 QGISV-EKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY- 182 Query: 184 AVRIELEPQMLSQYGVSLDDVRTAITGANVRRPKGFV------EDDQHNWQVQANDQLET 237 A+RI L+ +L++Y ++ DV + N + G + Q N + A + + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 238 AKDYAPLIIRY-KDGATLRLKDVAKVSDAVEDRYNSGFYNNDRAVLLVVNRQAGANIIET 296 +++ + +R DG+ +RLKDVA+V E+ N A L + GAN ++T Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 297 VAQIKAQLPALRAVLPASVSLNVAMDRSPVIKATLHEAEMTLLIAVVLVVMVVFLFLGSF 356 IKA+L L+ P + + D +P ++ ++HE TL A++LV +V++LFL + Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 357 RASLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENISRHIH- 415 RA+LIPT+AVPV L+GTFAI+ G+S+N L++ ++LA GL+VDDAIVV+EN+ R + Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 416 NGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSIVVSL 475 + L P +A ++ L+ + + L AVFI + F GG +++R+FSIT+ ++ +S+ Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 476 IVSLTLTPMLCARWLKP---HDSGKDNAFQRWSERVNDRMVAGYDRSLGWVMRHRRLTLL 532 +V+L LTP LCA LKP F W D V Y S+G ++ LL Sbjct: 483 LVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLL 542 Query: 533 SLLITVVVNVALYVVVPKTFLPQQDTGQLMGFVRGDDGLSFSVMQPKMEIFRRSILADPA 592 + V V L++ +P +FLP++D G + ++ G + Q ++ L + Sbjct: 543 IYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEK 602 Query: 593 VE-----SVAGFIGGSGGTNNAFMIVRLKPIAER---KLSAEKVVERLRKNMPHVPGGRL 644 +V GF N V LKP ER + SAE V+ R + + + G + Sbjct: 603 ANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFV 662 Query: 645 FLAPDQDLQLGGGREQTSSQYQYIVQSADLSSLRLWYPKIVAAL--KSIPELTAIDAREG 702 + G T ++ I Q+ + + + L ++ Sbjct: 663 IPFNMPAIVELGTA--TGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 703 RGAQQVTLVVNRDTAKRLGIDMNMVTAVLNNAYSQRQVSTIYDSLNQYKVVMEVNPKYAQ 762 Q L V+++ A+ LG+ ++ + ++ A V+ D K+ ++ + K+ Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 763 DPATLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGVSLDKAT 822 P ++++ V +A+G+ VP S+ + R+ + I + A G S A Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 823 VAIERAIAAIGLPSDIISKMAGTANAFASTQKSQPWMILGALLAVYLVLGILYESYIHPL 882 +E + LP+ I G + + P ++ + + V+L L LYES+ P+ Sbjct: 841 ALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 883 TILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMIDLALHLERDQGMT 942 +++ +P VG LL + + + ++GL IG+ KNAI++++ A L +G Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 943 PQESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQVLTL 1002 E+ A RLRPILMT++A ILG LPL +S G+ + +G+ ++GG++ + +L + Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1003 YTTPVVYLYLDRL 1015 + PV ++ + R Sbjct: 1019 FFVPVFFVVIRRC 1031 Score = 94.1 bits (234), Expect = 2e-21 Identities = 74/506 (14%), Positives = 167/506 (33%), Gaps = 31/506 (6%) Query: 2 NLSAPFIRRPVATVLLSLAILLLGAVSFRLLPVAPLPNMDFPVIVVSASL-AGASPEVMA 60 N + +L+ I+ V F LP + LP D V + L AGA+ E Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 STVAT----------PLERSLGSIAGVNTMTSNSSQGTTRIILQFDLNRDINGAAREVQA 110 + S+ ++ G + + G + L+ + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLK---PWEERNGDENSAE 644 Query: 111 AINASRNLLPSGMRSMPTYKKVNPSQAPIMVLSMTSTVLEK------GQLYDLASTILSQ 164 A+ + +R P+ + + L L + +L Sbjct: 645 AVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGM 704 Query: 165 SLSQVSGVGEVQIGGSS-LPAVRIELEPQMLSQYGVSLDDVRTAITGANVRRPKGFVEDD 223 + + + V+ G ++E++ + GVSL D+ I+ A D Sbjct: 705 AAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDR 764 Query: 224 QHNWQV--QANDQL-ETAKDYAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGFYNNDRA 280 ++ QA+ + +D L +R +G + + + Sbjct: 765 GRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSH---WVYGSPRLERYNGL 821 Query: 281 VLLVVNRQAGANIIETVAQIKAQLPALRAVLPASVSLNVAMDRSPVIKATLHEAEMTLLI 340 + + +A + A + L + LPA + + S + + ++A + I Sbjct: 822 PSMEIQGEAAPGT--SSGDAMALMENLASKLPAGIGYDW-TGMSYQERLSGNQAPALVAI 878 Query: 341 AVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVV 400 + V+V + + S+ + L VP+ +VG L + ++ L+ GL Sbjct: 879 SFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSA 938 Query: 401 DDAIVVLENI-SRHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESL 459 +AI+++E G ++A + + +L +++ + + + G Sbjct: 939 KNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGA 998 Query: 460 FREFSITLSVSIVVSLIVSLTLTPML 485 I + +V + ++++ P+ Sbjct: 999 QNAVGIGVMGGMVSATLLAIFFVPVF 1024 Score = 80.3 bits (198), Expect = 3e-17 Identities = 52/323 (16%), Positives = 117/323 (36%), Gaps = 14/323 (4%) Query: 707 QVTLVVNRDTAKRLGIDMNMVTAVLNNAYSQ----RQVSTIYDSLNQYKVVMEVNPKYAQ 762 + + ++ D + + V L Q + T Q + ++ + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF-K 241 Query: 763 DPATLEQVQV-ITADGQRVPLSSIAHYERSLANDR--VSHDGQFAAENISFDLAEGVSLD 819 +P +V + + +DG V L +A E N +G+ AA +LD Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 820 KATVAIERAIAAI--GLPSDIISKMAGTANAF--ASTQKSQPWMILGALLAVYLVLGILY 875 A AI+ +A + P + F S + + +L LV+ + Sbjct: 302 TAK-AIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVF-LVMYLFL 359 Query: 876 ESYIHPLTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMIDLALHL 935 ++ L +P +G + G + +++ G+ L IG++ +AI++++ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 936 ERDQGMTPQESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLI 995 + + P+E+ + Q ++ M +P+ + + +TI+ + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 996 FSQVLTLYTTPVVYLYLDRLRHR 1018 S ++ L TP + L + Sbjct: 480 LSVLVALILTPALCATLLKPVSA 502
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 84.7 bits (209), Expect = 1e-21 Identities = 75/262 (28%), Positives = 109/262 (41%), Gaps = 31/262 (11%) Query: 3 KVLIITGGSRGIGAATARLAAVQGYRICINYLSDHAAAEKTAGQVRALGAQAITLQADVS 62 K+ ITG ++GIG A AR A QG I + EK ++A A ADV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 63 NEDEIMRLFSRVDSELGRVTHLVNNAGTLAQASRVEDMSEFRMLKMMMTNVVGPMLCSKH 122 + I + +R++ E+G + LVN AG L + +S+ N G S+ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGL-IHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 123 ALLRMLPSHGGHGGSIVNVSSLAA---RLGSAGEYVDYAASKGALDTFTIGLSREVAGEN 179 M+ G SIV V S A R A YA+SK A FT L E+A N Sbjct: 127 VSKYMMDRRSG---SIVTVGSNPAGVPRTSMAA----YASSKAAAVMFTKCLGLELAEYN 179 Query: 180 IGVNAVRPGFIFTDFH--------------ALSGDPFRVSKLEGALPMGRGGTAEEVAEA 225 I N V PG TD S + F+ +P+ + ++A+A Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKT-----GIPLKKLAKPSDIADA 234 Query: 226 ILWLLSDNASYATGTFIDLAGG 247 +L+L+S A + T + + GG Sbjct: 235 VLFLVSGQAGHITMHNLCVDGG 256
>PF04183#IucA / IucC family Length = 580 Score = 184 bits (468), Expect = 6e-53 Identities = 90/395 (22%), Positives = 146/395 (36%), Gaps = 32/395 (8%) Query: 103 RCLAFAVFARQLLAACEHMTRASNDELLDQVLQ--SQHLTAAIVAHNMTGQHPA--PLSG 158 RC V A+ LL + + S D + + +Q L + A ++ Sbjct: 66 RCADEPVLAQTLLMQLKQVLSMS-DATVAEHMQDLYATLLGDLQLLKARRGLSASDLINL 124 Query: 159 YLASEQGLWFGHPNHPAPKARLWPAHLAQETYAPEFQAQTALHLF-------------EV 205 Q L GHP K R A E YAPE+ LH E+ Sbjct: 125 NADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRCDNEM 184 Query: 206 PLDGLRITSNGLSEAEVMSGFADQSRARPGHALICMHPVQAQLFMQDRRVQRLSELGQIT 265 + L + E S ++ + +HP Q Q + + +E G++ Sbjct: 185 DIHQLLTAAMDPQEFARFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAE-GRMV 243 Query: 266 DLGTSGPLASPTASMRTWYIEG--HDYFIKGSLNVRITNCVRKNAWYELESTLIIDELFQ 323 LG G S+RT IK L + T+C R + + + Q Sbjct: 244 SLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQ 303 Query: 324 RLQQTRPQ-TLGGLSTVAEP--GSMSWAPKGSSETDGHWFREQTGAILRENFCRRSSAD- 379 ++ T G + EP G +S + + ++E G I REN CR D Sbjct: 304 QVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLKPDE 363 Query: 380 CSVMAGTLFARDLRSRPLVHDFLERFNGGELEDPHLLDWFDEYQALLLRPVMALFFNHGI 439 V+ TL D ++PL +++R D W + +++ P+ L +G+ Sbjct: 364 SPVLMATLMECDENNQPLAGAYIDRSG----LDAE--TWLTQLFRVVVVPLYHLLCRYGV 417 Query: 440 VMEPHLQNAVLIHDNGRPQQLLLRDFEG-VKLTDE 473 + H QN L G PQ++LL+DF+G ++L E Sbjct: 418 ALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLVKE 452
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 135 bits (340), Expect = 5e-37 Identities = 88/412 (21%), Positives = 174/412 (42%), Gaps = 19/412 (4%) Query: 9 WVVFNVLLGTLTVSLSNSSLNPALPTFMEAFKVGPLLATWIVAGFMTSMGMTMPLTSFLS 68 W+ L + LN +LP F P W+ FM + + + LS Sbjct: 18 WLCILSFFSVLNEMV----LNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 69 QRIGRKRLYLWGVALFIGGSLLGALANSIA-LVITARVVQGIASGLMIPLSLAIIFSVYE 127 ++G KRL L+G+ + GS++G + +S L+I AR +QG + L + ++ Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 128 KHERGRVTGLWSAAVMLAPALGPLCGSLMLEWFSWRSLFLMNVPIGLLALLLGVGVLPDS 187 K RG+ GL + V + +GP G ++ + W +L+ +P+ + + + L Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKK 191 Query: 188 EPVERKPFDLIGYLLVASGIGLLMIAISRMHHAQALLDPFNQGMVLVAVACLIAFVRVEL 247 E + FD+ G +L++ GI M+ + ++ ++V+V + FV+ Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTS----------YSISFLIVSVLSFLIFVKHIR 241 Query: 248 SRKAPLLNLRLFNLRGYRLSVIVAVVQSVGMFECLVLLPLLVQTVLGYNPIWTGLALLCT 307 P ++ L + + V+ + + + ++P +++ V + G ++ Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP 301 Query: 308 AAFAS-LFGQWGGKALDRHGPRTVVAIGLLLTGASTLALGMLKADTAIGVVFVLMMIRGA 366 + +FG GG +DR GP V+ IG+ S L L T+ + +++ + G Sbjct: 302 GTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG- 360 Query: 367 GLGLSYMPVTTAGLNALPEPMVTQGAAMNNISRRLVASLAIVIASLWLEFRL 418 GL + ++T ++L + G ++ N + L I I L L Sbjct: 361 GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPL 412
>PF04183#IucA / IucC family Length = 580 Score = 489 bits (1259), Expect = e-169 Identities = 169/599 (28%), Positives = 255/599 (42%), Gaps = 43/599 (7%) Query: 25 INPERYQQVQRRVIGQLLQTLLYEAALPYRCEPLDDHRHRFTVAVSDGVEYHCEGLLSTS 84 +N + + V RR++ ++L L YE + D + G ++ Sbjct: 1 MNHKDWDLVNRRLVAKMLSELEYEQVFHAESQGDDRYCINL-----PGAQWRFIAE-RGI 54 Query: 85 FELIRLDHATLERLDSAGERSVPDLHLALSELLSPFKDSPHLARFIQEIEQTQLKDLQA- 143 + + +D TL D L + L ++LS +A +Q++ T L DLQ Sbjct: 55 WGWLWIDAQTLRCADEPVL--AQTLLMQLKQVLS--MSDATVAEHMQDLYATLLGDLQLL 110 Query: 144 RSQGYQPAKPAHELDVDALEQHFMDAHSYHPCYKSRIGFSLADNRHYGPEFATPFGVVWL 203 +++ A L+ D Q + H K R G+ Y PE+A F + WL Sbjct: 111 KARRGLSASDLINLNADR-LQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWL 169 Query: 204 AVAKSSASVGHARNMDFQAFIRQELGTQRWQEMSRDLAAQGKSIEDYQLMPVHPWQWDNV 263 AV + MD + + Q + S+ G ++ +PVHPWQW Sbjct: 170 AVKREHMIWRCDNEMDIHQLLTAAMDPQEFARFSQVWQENGLD-HNWLPLPVHPWQWQQK 228 Query: 264 TVSTFYPELASGELIYLGTSTDVYKAQQSIRTLANASQPKRPYVKLAMSMTNTSSTRILA 323 + F + A G ++ LG D + AQQS+RTL NAS+ +KL +++ NTS R + Sbjct: 229 IATDFIADFAEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIP 288 Query: 324 RHTVLNGPIITDWLHQLIATDSTARALNFVILGEVAGVSYD---YRHLPEARSTQTYGTL 380 + GP+ + WL Q+ ATD+T VILGE A Y L A L Sbjct: 289 GRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQ-EML 347 Query: 381 GAIWRESLHQYLKDDEQAVPFNGLSHVENRYGDGEQAPFIDAWIRQYGL--KEWTRQLLQ 438 G IWRE+ ++LK DE V L D P A+I + GL + W QL + Sbjct: 348 GVIWRENPCRWLKPDESPVLMATLMEC-----DENNQPLAGAYIDRSGLDAETWLTQLFR 402 Query: 439 VTVPPIIHMLYAEGIGMESHGQNIVLIVKQGWPQRIALKDFHDGVRYSPAHLGRPELCPE 498 V V P+ H+L G+ + +HGQNI L +K+G PQR+ LKDF +R PE Sbjct: 403 VVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEF------PE 456 Query: 499 LVPLPDSHAKLNR---NSFIITDDVNAVRDFSCDCFFFICLAEMAIFLRQQYQLDEALFW 555 + LP + ++I D F+ + L + + E F+ Sbjct: 457 MDSLPQEVRDVTSRLSADYLIHD---------LQTGHFVTVLRFISPLMVRLGVPERRFY 507 Query: 556 QMTADVILDYQRAHPQHRERFELFDVFAPSYEVEELTKRRL-LGDGERRFRSVPNPLHT 613 Q+ A V+ DY + HPQ ERF LF +F P L +L D + R +PN L Sbjct: 508 QLLAAVLSDYMKKHPQMSERFALFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLED 566
>PF04183#IucA / IucC family Length = 580 Score = 178 bits (454), Expect = 7e-51 Identities = 108/508 (21%), Positives = 177/508 (34%), Gaps = 37/508 (7%) Query: 133 FLEVLRISVWQTALSLDHKVDEHN-LMAQDGATFFRTMEQWASLRDRPYHPLAKAKQGLN 191 + ++ T L + L A D Q L P K ++G Sbjct: 91 TVAEHMQDLYATLLGDLQLLKARRGLSASDLINLNADRLQ-CLLSGHPKFVFNKGRRGWG 149 Query: 192 EQEYQQYQAEFARPVALNWVAVDKTLLQCGDGVGDLNESFPARHLLPENLQAVLEQELQQ 251 ++ ++Y E+A L+W+AV + + + P+ Q Q+ Sbjct: 150 KEALERYAPEYANTFRLHWLAVKREHMIWRCDNEMDIHQLLTAAMDPQEFAR-FSQVWQE 208 Query: 252 RGIADSHVALPVHPWQFEHVLQVQLGDAFARGDCQRLAFNEAAVYATSSLRSMTPCLDSP 311 G+ + + LPVHPWQ++ + FA G L A SLR++T Sbjct: 209 NGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMVSLGEFGDQWLAQQSLRTLT-NASRR 267 Query: 312 D--YLKLPMAIYSLGASRYLPAVKMINGGLSEKLLRQVVDKDETLSRS-LHLCDERKWWA 368 +KLP+ IY+ R +P + G L+ + L+QV D TL +S + E Sbjct: 268 GGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGY 327 Query: 369 F-MPPQATLFDEGPRH---LSAMVRGYPAALLDDPECRLLPMAALGTPLPGSNRHFFDEW 424 A L R+ L + R P L P+ + MA L N+ + Sbjct: 328 VSHEGYAALARAPYRYQEMLGVIWRENPCRWL-KPDESPVLMATLMECDEN-NQPLAGAY 385 Query: 425 MDYRDLPRNQASVLTLFRELSHSFFDINLRMF-RLGMLGEVHGQNAVIVWKAGQAQGLLL 483 +D L T +L + R G+ HGQN + K G Q +LL Sbjct: 386 IDRSGLD-----AETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLL 440 Query: 484 RD-HDSLRIFVPWLERNGMRDPEYRIKKGHANTLYHDRPED-LLFWLQTLGIQVNVRAIM 541 +D +R+ PE + D L+ LQT G V V + Sbjct: 441 KDFQGDMRLVKEEF-------PEMDSLPQEVRDVTSRLSADYLIHDLQT-GHFVTVLRFI 492 Query: 542 DTLAQVYEVPVKALWTVLRDVLDNLITTIEFDDEARAMIRHQLFEAPNWPQKLLLTP--- 598 L VP + + +L VL + + + LF +++L P Sbjct: 493 SPLMVRLGVPERRFYQLLAAVLSDYMKK--HPQMSERFALFSLFRPQ--IIRVVLNPVKL 548 Query: 599 -MIERAGGPGSMPFGKGEVVNPFHRLRR 625 + GG +P ++ NP + + Sbjct: 549 TWPDLDGGSRMLPNYLEDLQNPLWLVTQ 576
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 83.1 bits (205), Expect = 2e-20 Identities = 73/301 (24%), Positives = 116/301 (38%), Gaps = 40/301 (13%) Query: 10 SRRTVLRLSLGLLALPGIAWAEPLRATPPRVVTLFQGASDSAVALGVTPCGVVDS----- 64 SRR +L L + A P R+V L + +ALG+ P GV D+ Sbjct: 8 SRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRL 67 Query: 65 WSEKPMYRYLRPALAAVPHVGLETQPSLEDIVLLKPDLIVASRFRHQRIAPLLEQISPVL 124 W +P P +V VGL T+P+LE + +KP +V S P E ++ + Sbjct: 68 WVSEP------PLPDSVIDVGLRTEPNLELLTEMKPSFMVWS----AGYGPSPEMLARIA 117 Query: 125 MLEEVFEF----------KRTLAMMGAAMLRQQQAMDLLGQWQQRVTALRSRLQEKFAGR 174 F F +++L M + Q A L Q++ + +++ R ++ R Sbjct: 118 PG-RGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKR-GAR 175 Query: 175 WPITVSVLDIREDHIRSYLPASFAGSVLTELGF--AWTPTAREATGVSLKLSSKESLPVV 232 + +++D R H+ + P S +L E G AW E S + L Sbjct: 176 PLLLTTLIDPR--HMLVFGPNSLFQEILDEYGIPNAWQ---GETNFWGSTAVSIDRLAAY 230 Query: 233 DADLFFIFQRADSKAAQQNYDKLVRHPFWQQLRAAQDGQVWRVDAVAWSLSGGILGANRM 292 F +SK L+ P WQ + + G+ RV AV W G L A Sbjct: 231 KDVDVLCFDHDNSKDMDA----LMATPLWQAMPFVRAGRFQRVPAV-W-FYGATLSAMHF 284 Query: 293 L 293 + Sbjct: 285 V 285
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 30.5 bits (69), Expect = 0.007 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 23/99 (23%) Query: 34 ARALLDDEVCEQLLAA--------LGPIIGSPTQAITASLLAKRFSFLSTGA---CLYAM 82 A+A++ +E + L +G ++ P+ A+ A+L AK F S G Y M Sbjct: 403 AKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTM 462 Query: 83 SV----------YDKG--LILSLDNSVIEYAHDDGLWTS 109 + Y IL L + VI+ AH +G W Sbjct: 463 AADRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVG 501
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 51.0 bits (122), Expect = 6e-09 Identities = 45/191 (23%), Positives = 66/191 (34%), Gaps = 19/191 (9%) Query: 31 LVVALGITWLLDGLEVTLAGSV-AGALKASPALNLTNSDVGLAGAAYIAGAVLGALFFGW 89 L+V L LD + + L V G L+ N + G+ A Y A G Sbjct: 7 LIVILSTV-ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 90 LADRLGRRKLFFITLLLYVGATAATAFSFSVWSFMLFRFLTGMGIGGEYTAINSTIQEFT 149 L+DR GRR + ++L A A + +W + R + G+ G + I + T Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADIT 124 Query: 150 P----ARYRGWVDLTINGTFWLGAALGAIGSIVLLDPQWVGAELGWRLCFGIGAVLGLLV 205 AR+ G++ G LG + F A L L Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGG-----------LMGGFSPHAPFFAAAALNGLN 173 Query: 206 LLMR-LWLPES 215 L LPES Sbjct: 174 FLTGCFLLPES 184 Score = 30.9 bits (70), Expect = 0.012 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Query: 62 LNLTNSDVGLAGAAY-IAGAVLGALFFGWLADRLGRRKLFFITLLLYVGATAATAFSFSV 120 + + +G++ AA+ I ++ A+ G +A RLG R+ + ++ AF+ Sbjct: 241 FHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRG 300 Query: 121 WSFMLFRFLTGMG 133 W L G Sbjct: 301 WMAFPIMVLLASG 313
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.004 Identities = 65/403 (16%), Positives = 120/403 (29%), Gaps = 81/403 (20%) Query: 75 FGFSDQAAFASATFLGLF-FGASLVSPI----ADRYGRRAIFTFALIWYTIATVIMGLQT 129 S+ L L+ +P+ +DR+GRR + +L + IM Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMAT-A 93 Query: 130 SALGVIGMRFLVGIGLGVELVTIDTYLSELVPKRIRSSAFAF---AFFIQFLSVPSVALM 186 L V+ + +V G Y++++ R+ F F F ++ P + + Sbjct: 94 PFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL 153 Query: 187 SWWLVPQAPFGFSGWRWVVIGSAVFALFVWWLRSALPESPRWLAQQGRFDEAELIMDGIE 246 P APF + + F + L + Sbjct: 154 MGGFSPHAPFFAAA----ALNGLNFLTGCFLLPES------------------------- 184 Query: 247 ARCIKDQGKPLDEPEPEKVALSGNGRFADMWQPPYRRRALMLIVFHLLQAIGFFG----- 301 K + +PL +A W A ++ VF ++Q +G Sbjct: 185 ---HKGERRPLRREALNPLASF-------RWARGMTVVAALMAVFFIMQLVGQVPAALWV 234 Query: 302 -FG----NWLPAL--LSGQGLSVTHSLGYAFVITLAYPLGPLLFVKFANRFENKWQIVGS 354 FG +W +S + HSL A + A R + ++ Sbjct: 235 IFGEDRFHWDATTIGISLAAFGILHSLAQAMI-----------TGPVAARLGERRALMLG 283 Query: 355 ALGAMIFGSLFAFQTSAAGLIFCGIMITFCNAWLSFSYHSYQGELFPTNIRARAVGFC-- 412 + L AF T + I A + Q + + G Sbjct: 284 MIADGTGYILLAFATR----GWMAFPIMVLLASGGIGMPALQA-MLSRQVDEERQGQLQG 338 Query: 413 --YSFSRLSTVFSSLLIG-IFLDHFGTPGVLAFIVGSMLIVII 452 + + L+++ LL I+ T A+I G+ L ++ Sbjct: 339 SLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLC 381
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 363 bits (934), Expect = e-123 Identities = 125/358 (34%), Positives = 187/358 (52%), Gaps = 16/358 (4%) Query: 174 QRQLAEVYKRAAGGRAPRELIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAES 233 K + L+G+SA Q + + + + + LT+++ GE+G GKELVA + Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 234 IHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSGAVNGRSGRFELADGGTLFLDE 293 +H + R + P +++N AA+P L+ESELFGH KGAF+GA +GRFE A+GGTLFLDE Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239 Query: 294 VGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHR 353 +G++P+ Q++LLRVLQ G+ VG DVRI+AATN+DL + + G FR DLY+R Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299 Query: 354 LSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLLAHPWPGNVREL 413 L+V PL +P LR+R D+ L +F+++ + GL R EA L+ AHPWPGNVREL Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVREL 358 Query: 414 EHLISRAVLKA-----------LSAHPQKPRILTVEGPA----LGLDGSASATPLPTAEK 458 E+L+ R + P + A L + + Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 459 ALSAAVQGAGLKASVDAFQRSLIVDCLERHQGRWAEVARDLAVDRANLNRLAKRLGIR 516 A + + LI+ L +G + A L ++R L + + LG+ Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 54.7 bits (131), Expect = 5e-11 Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 9/195 (4%) Query: 2 KKILIIGATSAIAHACARLWAAQGCDFFLVARDMEKLDSNAADLKARGAGRIDTHRLDVT 61 K I GA I A AR A+QG V + EKL+ + LKA + DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA-EAFPADVR 67 Query: 62 HFSEHPAMLADCLAALGQIDIVLLAHGTL----PDQKACEQYAGLAIQEFITNGASVIAL 117 + + A +G IDI++ G L + E++ F N V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWE----ATFSVNSTGVFNA 123 Query: 118 LTLLARHFEVQRCGTLAVLSSVAGDRGRPSNYLYGSAKAAVSTFCDGLQARMFKFGVHVV 177 ++++ +R G++ + S R S Y S+KAA F L + ++ + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 178 TIKPGFVDTPMTHGL 192 + PG +T M L Sbjct: 184 IVSPGSTETDMQWSL 198
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 119 bits (300), Expect = 9e-35 Identities = 76/263 (28%), Positives = 125/263 (47%), Gaps = 18/263 (6%) Query: 5 LKQQVAIVTGASSGLGAGAARALADAGAAVVINYNSKAEPAEKLAEEIRAAGGRALAVGA 64 ++ ++A +TGA+ G+G AR LA GA + + E EK+ ++A A A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIA-AVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 65 DVSKEADVERLFAQTIEHFGALDILVANSGLQKDAAIVDMSLEDWNTVINVNLTGQFLCA 124 DV A ++ + A+ G +DILV +G+ + I +S E+W +VN TG F + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 125 RAALRQFIKQGMRPDVSRAIGKIIHMSSVHQLIPWAGHVNYAASKGGVDLLMRSIAQEVG 184 R+ + + R G I+ + S +P YA+SK + + + E+ Sbjct: 125 RSVSKYMMD--------RRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 185 ELKIRVNSVAPGAIRTPI--------NADARKRDAEKEMLKL-IPYGRIGEPEDVANAVL 235 E IR N V+PG+ T + N + E K IP ++ +P D+A+AVL Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 236 WLASDASDYVHGTTLYIDGGMTL 258 +L S + ++ L +DGG TL Sbjct: 237 FLVSGQAGHITMHNLCVDGGATL 259
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 29.1 bits (65), Expect = 0.015 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 4/68 (5%) Query: 101 NPRLDRKNITAALEASLKRLNTDYLDLYQLHWPDRKTNFFGVL----GYTHDPDDQAVEI 156 N + ++ + +L L Y L++ HW + +FF + + I Sbjct: 5 NAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTI 64 Query: 157 EETLSVLG 164 E L +G Sbjct: 65 AERLLAIG 72
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 1e-19 Identities = 29/113 (25%), Positives = 50/113 (44%) Query: 2 TRILAIEDDAITAKEIVTELSNHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGL 61 IL +DDA + LS G +V N +GD DL+ D ++P+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 TIVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVE 114 ++ ++ P+L++SA + ++ G DYLPKPF E+ + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.8 bits (124), Expect = 3e-09 Identities = 22/158 (13%), Positives = 51/158 (32%), Gaps = 5/158 (3%) Query: 84 ALTGDIQARKVTEQAFRVSGKLIKRYVDVGNRVRAGQVLARLDPQEQKNELASANAEVAM 143 + + ++ K +D + + Q +A+ EQ+N+ A E+ + Sbjct: 211 KKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRV 270 Query: 144 RQSRLYLAEQNYLRQQLLLPKGYTNLSEYQK-ARSGLESARAELAALQAQQANARDQVGY 202 +S+L E L + ++ L + L + A ++ Sbjct: 271 YKSQLEQIESEILSAKEEY---QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQA 327 Query: 203 TELLAVADG-VITARHAEEGQVVQAGAPVFSVAHDGER 239 + + A V + EG VV + + + + Sbjct: 328 SVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDT 365 Score = 37.1 bits (86), Expect = 9e-05 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 7/96 (7%) Query: 109 YVDVGNRVRAGQVLARLDP-------QEQKNELASANAEVAMRQSRLYLAEQNYLRQQLL 161 V G VR G VL +L + ++ L A E Q E N L + L Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL 170 Query: 162 LPKGYTNLSEYQKARSGLESARAELAALQAQQANAR 197 + Y ++ + + + Q Q+ Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206 Score = 29.8 bits (67), Expect = 0.022 Identities = 10/83 (12%), Positives = 27/83 (32%) Query: 123 ARLDPQEQKNELASANAEVAMRQSRLYLAEQNYLRQQLLLPKGYTNLSEYQKARSGLESA 182 L+ +++ E + A + ++ + + LL K + + A Sbjct: 205 KELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEA 264 Query: 183 RAELAALQAQQANARDQVGYTEL 205 EL ++Q ++ + Sbjct: 265 VNELRVYKSQLEQIESEILSAKE 287
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.0 bits (96), Expect = 5e-06 Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 19/195 (9%) Query: 84 GDRVRKGDLLATLEPGDQQHRLRARQAELGRARSAWQQARDEQTRYQQLYERGIGSRVRL 143 G+ VRKGD+L L +A+ + +S+ QAR EQTRYQ L + L Sbjct: 115 GESVRKGDVLLKLTALGA-------EADTLKTQSSLLQARLEQTRYQILSR-----SIEL 162 Query: 144 DQLNSEVRIQDALRSQASIALQQATDHVSHTRLSAEFDGL------ITEWQAEVGQVIAT 197 ++L + S + + S + + + +AE V+A Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 198 GQAVVSLARPESREAVVDLPLGALDDNQRIRVISQLDEQVSVTAKVRQLAPQIN-AETRT 256 +L+R E L + V+ Q ++ V ++R Q+ E+ Sbjct: 223 INRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI 282 Query: 257 QRVRLALQHMPDSFR 271 + Q + F+ Sbjct: 283 LSAKEEYQLVTQLFK 297 Score = 38.3 bits (89), Expect = 3e-05 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 11/115 (9%) Query: 102 QHRLRARQAELGRARSAWQQARDEQTRYQQLYERGIGSRVRLDQLNSEVRIQDALRSQAS 161 + LR +++L + S A++E QL++ I ++R N + Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNI---------GLLT 315 Query: 162 IALQQATDHVSHTRLSAEFDGLITEWQA-EVGQVIATGQAVVSLARPESREAVVD 215 + L + + + + A + + + G V+ T + ++ + PE V Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIV-PEDDTLEVT 369
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 472 bits (1217), Expect = e-152 Identities = 237/1045 (22%), Positives = 437/1045 (41%), Gaps = 68/1045 (6%) Query: 12 LRHRTLVWYMMFVSLLMGSWSFLNLGREEDPSFAIKTMVIQARWPGATLPDTLQQVTDRL 71 +R W + + ++ G+ + L L + P+ A + + A +PGA VT + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVI 65 Query: 72 EKKLEEIDALDYVKSYTL-AGESTLFVFLKSETRSADIPAAWYQVRKKISDVRSELPSGI 130 E+ + ID L Y+ S + AG T+ + +S T D A QV+ K+ LP + Sbjct: 66 EQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGT---DPDIAQVQVQNKLQLATPLLPQEV 122 Query: 131 QGP-AFNDEFGDVFGSIYAFTADGLSFRQ--LRDYVE-QVRADIRSVPNLGKIELLGAQR 186 Q ++ + + F +D Q + DYV V+ + + +G ++L GAQ Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182 Query: 187 EV-IYLNFSIRKLAALGIDQRQVLQSLQAQNSVTPAGVIESGPE------RIAVRASGQF 239 + I+L+ L + V+ L+ QN AG + P ++ A +F Sbjct: 183 AMRIWLDAD--LLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 SSEEDLEAVNLRFGE--RFFRLSDLATIERRYADPPSSLFRFNGQPAIGLAVAMKQGGNI 297 + E+ V LR RL D+A +E + + + R NG+PA GL + + G N Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKLATGANA 299 Query: 298 QAFGTQLQQRIDELTTELPLGIDVHLVSSQADVVEKAIGGFTHALFEAILIVLVVSFISL 357 ++ ++ EL P G+ V V+ +I LFEAI++V +V ++ L Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 358 G-IRAGLVVACSIPLVLALVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEMMVTR 416 +RA L+ ++P+VL F + G ++ +++ +++A+GLLVDDA++ VE + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 417 LESGDSLPQAATF-AYTSTAFPMLTGTLVTVAGFVPIGLNSSSAGEYVFTMFAVIAVALL 475 + P+ AT + + ++ +V A F+P+ S G I A+ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 476 LSWLVAVLFAPLIGVHILKASA--PHAAPG-----------RWMRGFSGLLVKTLEHRWW 522 LS LVA++ P + +LK + H G + ++ + K L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 523 VIGITLLMFIGSLFATRMLQNQFFPDSDRPEILVDIYMPQNGSIEGTRQTMDRFEATLKN 582 + I L+ G + L + F P+ D+ L I +P + E T++ +D+ Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 583 DPDVLRWSSYVGKGAVRFYLPLDQQLSNPFYGQLVIVSQGGAARDRL-IERLRQRFRDDY 641 + S + G Q N + + D E + R + + Sbjct: 600 NEKANVESVFTVNG-----FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMEL 654 Query: 642 VGV-GGYVQPLNMGPPVGWPVQYRVSGPDIEQVRSQAMALAAILDAN-----------PN 689 + G+V P NM V +G D E + + A+ A + Sbjct: 655 GKIRDGFVIPFNMPAIVE---LGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPAS 711 Query: 690 IGQVIYDWNEPGKVLKIDIAQDKVRQFGLSSEDVAQILNSMVSGTTITQVRDSTYLIDMV 749 + V + E K+++ Q+K + G+S D+ Q +++ + GT + D + + Sbjct: 712 LVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLY 771 Query: 750 ARAENDERNSVQSLGNLQIPTPNGASVPLLAFATLSYEQEQPLVWRRDRLATITLKASVL 809 +A+ R + + L + + NG VP AF T + P + R + L ++ + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSME----IQ 827 Query: 810 GKLQPAALVRQLKPEVDAFSARLPLRYSLATGGAVEASARSQGPILKVVPLMLLLVVSFL 869 G+ P ++ +++LP G S +V + ++V L Sbjct: 828 GEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCL 887 Query: 870 MIQLHSVKKLLLVVSVVPLGLIGVVAALLISGYPLGFVAILGVLALIGIIIRNSVILVTQ 929 S + V+ VVPLG++GV+ A + ++G+L IG+ +N++++V Sbjct: 888 AALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEF 947 Query: 930 IDEFIAA-GESAWTSVVKATEHRCRPILLTAAAASLGMIPIA------REVFWGPMAIAM 982 + + G+ + + A R RPIL+T+ A LG++P+A + I + Sbjct: 948 AKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQN-AVGIGV 1006 Query: 983 IGGIAIATLLTLFFLPALYVVSYRI 1007 +GG+ ATLL +FF+P +VV R Sbjct: 1007 MGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 70.3 bits (172), Expect = 3e-14 Identities = 52/326 (15%), Positives = 124/326 (38%), Gaps = 22/326 (6%) Query: 702 KVLKIDIAQDKVRQFGLSSEDVAQIL---NSMVSGTTI--TQVRDSTYLIDMVARAENDE 756 ++I + D + ++ L+ DV L N ++ + T L + Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQL--NASIIAQTR 239 Query: 757 RNSVQSLGNLQIPT-PNGASVPLLAFATLSY-EQEQPLVWRRDRLATITLKASVLGKLQP 814 + + G + + +G+ V L A + + ++ R + L + Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 815 AALVRQLKPEVDAFSARLP----LRYSLATGGAVEASARSQGPILKVVPLMLLLVVSFLM 870 + +K ++ P + Y T V+ S ++K + ++LV + Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHE---VVKTLFEAIMLVFLVMY 356 Query: 871 IQLHSVKKLLLVVSVVPLGLIGVVAALLISGYPLGFVAILGVLALIGIIIRNSVILVTQI 930 + L +++ L+ VP+ L+G A L GY + + + G++ IG+++ +++++V + Sbjct: 357 LFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV 416 Query: 931 DEFIA-AGESAWTSVVKATEHRCRPILLTAAAASLGMIPIA-----REVFWGPMAIAMIG 984 + + + K+ ++ A S IP+A + +I ++ Sbjct: 417 ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVS 476 Query: 985 GIAIATLLTLFFLPALYVVSYRIRPP 1010 +A++ L+ L PAL + Sbjct: 477 AMALSVLVALILTPALCATLLKPVSA 502
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 43.0 bits (101), Expect = 1e-07 Identities = 18/32 (56%), Positives = 24/32 (75%) Query: 2 TRTQRGFTLLEVLLVISLLGVLLVLVAGALLG 33 T QRGFTLLE+++VI ++GVL LV L+G Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMG 35
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 34.2 bits (78), Expect = 5e-05 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%) Query: 4 SQSGFTLLEMLAALTVMAVCSGVLLVAFGQSA--RSLQQVSR 43 Q GFTLLEM+ L +M V +G++L+AF S + Q ++R Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLAR 43
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 39.1 bits (91), Expect = 1e-06 Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 1 MRTPVASRGFTLMEMLVVLVLMSIAVGLVGFGLQQGLSTASERRAVGDMV 50 MR RGFTL+E++VV+V++ + LV L A +++AV D+V Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIV 50
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 117 bits (295), Expect = 6e-37 Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 9/140 (6%) Query: 9 KPARRQGGFTLLEMLAVIVLLGIVATIVVRQVGGNVDKGKYGAGKAQLASLGMKIESYAL 68 + +Q GFTLLE++ VIV++G++A++VV + GN +K + + +L ++ Y L Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61 Query: 69 DVGSPPKT---LQQLTERPGNA---SNWNGPYAKPSDLKDPFGHAFGYRFPGQHGSFDLI 122 D P T L+ L E P +N+N DP+G+ + PG+HG++DL+ Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLL 121 Query: 123 FYGQDGQPGGEGYSADLGNW 142 G DG+ G E D+ NW Sbjct: 122 SAGPDGEMGTED---DITNW 138
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 317 bits (814), Expect = e-108 Identities = 137/405 (33%), Positives = 215/405 (53%), Gaps = 8/405 (1%) Query: 1 MSLFKYRALDAQGAPQNGTLEARDQDAAIAALQKRGLMVLQIDAAGMGGLRRALGSGL-- 58 M+ + Y+ALDAQG GT EA A L++RGL+ L +D + +GL Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSG-STGLSL 59 Query: 59 -----LNGAALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKP 113 L+ + L T+QLATL+ A PLE +L + KQ +P L+ +R +V G Sbjct: 60 RRKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119 Query: 114 LSVALEEEGTQFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPAFL 173 L+ A++ F LY +MV AGE G L++ L +L+DY E+ Q +R + A+IYP L Sbjct: 120 LADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVL 179 Query: 174 VVGVLGSLALLLAYVVPQFVPIFKDLGVPIPLITEVILNLGQFLSNYGLAVLAGLIALIW 233 V + +++LL+ VVP+ V F + +PL T V++ + + +G +L L+A Sbjct: 180 TVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFM 239 Query: 234 GMAIRMRDPQRRERRDRRILGIRVIGPLLQRIEAARLTRTLGTLLTNGVALLQALVIARQ 293 + +R +RR RR+L + +IG + + + AR RTL L + V LLQA+ I+ Sbjct: 240 AFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGD 299 Query: 294 VCTNRALQAQVEQAAESVKGGGTLASAFGAQPLLPDLALQMIEVGEQAGELDTMLMKVAD 353 V +N + ++ A ++V+ G +L A L P + MI GE++GELD+ML + AD Sbjct: 300 VMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAAD 359 Query: 354 VFDVEAKRGIDRMLAALVPALTVVMAGMVAVIMLAIMLPLMSLTS 398 D E + L P L V MA +V I+LAI+ P++ L + Sbjct: 360 NQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNT 404
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 93.9 bits (233), Expect = 6e-26 Identities = 36/203 (17%), Positives = 74/203 (36%), Gaps = 5/203 (2%) Query: 17 RRAPKGEKRRKELLDAALQVFSLEGYTGASVAKVAAIVGISVAGLLHHFPSKISLLMGVL 76 + + ++ R+ +LD AL++FS +G + S+ ++A G++ + HF K L + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 77 DRRDEVNSRIAAEV---RTDNTLTGLLGGLRAINRSNATAPGVVRAFSILNAESLL--EN 131 + + + E + L+ L L + S T I+ + E Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 132 QPAFEWFQTRYERIHAHLMGQFAGLVERGEVRADVDLDKIIRQILAMMDGLQIQWLRFPD 191 + + + + +E + AD+ + + + GL WL P Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183 Query: 192 QVDLVECFDTYIAQVDAAVRARP 214 DL + Y+A + P Sbjct: 184 SFDLKKEARDYVAILLEMYLLCP 206
>FLAGELLIN#Flagellin signature. Length = 507 Score = 31.6 bits (71), Expect = 0.009 Identities = 13/74 (17%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Query: 422 VQTMDAGRRQAEEGVARVLEADQALVGISEAVANITDMTTQIATAT---EEQSAVAEEIN 478 ++ + R A +G++ + AL I+ + + +++ Q T + ++ +EI Sbjct: 57 IKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQ 116 Query: 479 RNIATIASLADQTS 492 + + I +++QT Sbjct: 117 QRLEEIDRVSNQTQ 130
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 61.9 bits (150), Expect = 4e-13 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 16/128 (12%) Query: 134 LNSSLLFVSGDAIPSDKAFTIIEKVSGIVKRFDNP---IHVEGFTDDQPISTAQFPTNWE 190 L S +LF A + ++++ + D + V G+TD I + + N Sbjct: 217 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDAY--NQG 272 Query: 191 LSSARSASIVRMLAMDGVNPARLASVGYGEFQPIAPNTTAAGR---------AKNRRVVL 241 LS R+ S+V L G+ ++++ G GE P+ NT + A +RRV + Sbjct: 273 LSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEI 332 Query: 242 VISRNLDV 249 + DV Sbjct: 333 EVKGIKDV 340
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.1 bits (143), Expect = 1e-11 Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 12/164 (7%) Query: 2 AVKVLVVDDSGFFRRRVTEILSSDPNIVVVGTATNGKEAIEQALALKPDVITMDYEMPMM 61 +LV DD R + + LS V +N A D++ D MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVR--ITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGITAVRHIMQRIP-TPVLMFSSLTHEGARVTLDALDAGAVDFLPKNF--EDISRNPQKV 118 + + I + P PVL+ S+ + A + GA D+LPK F ++ + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAI--KASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 119 KQLLCEKINSISRSNRRSSGFGAASAASA-----AAPAAPTSSS 157 + + + ++ SAA A T + Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLT 162
>PF06580#Sensor histidine kinase Length = 349 Score = 47.9 bits (114), Expect = 9e-08 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 10/79 (12%) Query: 466 ETDLDKNLVEALADPLV--HLVRNAVDHGIETPEEREASGKSRGGKVILSAEQEGDHILL 523 E ++ +++ P++ LV N + HGI +GGK++L ++ + L Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTL 294 Query: 524 SISDDGKGMDPNVLRSIAV 542 + + G N S Sbjct: 295 EVENTGSLALKNTKESTGT 313
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.6 bits (217), Expect = 1e-23 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%) Query: 2 KILIVDDFSTMRRIIKNLLRDLGFTNTSEADDGLTALPMLQSGAFDFLVTDWNMPGMTGI 61 IL+ DD + +R ++ L G+ + T + +G D +VTD MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 DLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKIFER 121 DLL +++ + LPVL+++A+ I+A++ G Y+ KPF L I + Sbjct: 64 DLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 122 VNS 124 Sbjct: 122 PKR 124
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 48.3 bits (114), Expect = 4e-08 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 11/161 (6%) Query: 314 AAAPLMNQPLAMHQSGWTEGIVDRVMYLSSQNLKTADIKLEPAELGRLDIRINMAPEQQT 373 AAP+++ PL H+ W + + + + Q ++A+++L P +LG + I + + + Q Sbjct: 226 VAAPVLSAPLGSHE--WQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKV-DDNQA 282 Query: 374 QVTFMSAHMGVRDALESQMSRLRESFVQQGLGNVDVNVSDQSQQQAQQQAQEQASRAQRN 433 Q+ +S H VR ALE+ + LR + G+ N+S +S QQ A +Q Q++ Sbjct: 283 QIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQ----QQS 338 Query: 434 GRGNGVSSGDTPDDIAGVDAAVPVSQPAARVIGSSEIDYYA 474 R DD VPVS RV G+S +D +A Sbjct: 339 QRTANHEPLAGEDDDT---LPVPVSL-QGRVTGNSGVDIFA 375
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.9 bits (184), Expect = 2e-16 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 3/133 (2%) Query: 10 ILIADDSASDRLLLSTIVARQGHRVLSAGNGVEAVAIFKAESPQLILMDAMMPVMDGFEA 69 IL+ADD A+ R +L+ ++R G+ V N A L++ D +MP + F+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 70 ARRIKAMSGESLVPIIFLTSLTEGEALARCLDAGGDDFMSKPYNPL-VLAAKLNAMNRLR 128 RIK + +P++ +++ + + G D++ KP++ ++ A+ + Sbjct: 66 LPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 129 VLHETVRQQRDQI 141 + Sbjct: 124 RRPSKLEDDSQDG 136
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 43.7 bits (102), Expect = 3e-08 Identities = 36/134 (26%), Positives = 69/134 (51%) Query: 9 LAPVVEMAEAAERTAAQRLGHFQGQVNLANNKLQELDQFRQDYQQQWLQRGSAGVSGQWL 68 LA + ++AE AA+ LG + A +L+ L ++ +Y+ SAG++ Sbjct: 7 LATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAGITSNRW 66 Query: 69 LGYQRFLSQLDVAVAQQYKSLEWHKANLDRARSAWQDCYARVEGLRKLVQRYMDEARRLE 128 + YQ+F+ L+ A+ Q + L +D A ++W++ R++ + L +R A E Sbjct: 67 INYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQSTAALLAE 126 Query: 129 DKREQKLLDELSQR 142 ++ +QK +DE +QR Sbjct: 127 NRLDQKKMDEFAQR 140
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 50.6 bits (120), Expect = 1e-09 Identities = 48/201 (23%), Positives = 89/201 (44%), Gaps = 17/201 (8%) Query: 39 PEPEPEPVDEPAEMEEVPLDEVQPLTLEELESIRQEAWNEGF------------ATGEKE 86 P+ E P+ EP EE ++E +P ++L ++ +A +G+ G +E Sbjct: 18 PQAEFVPIVEP---EETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQE 74 Query: 87 GFHSTQLKVRQEAEVVLAAKVAGLEQLMGHLLAPIAEQDTQIEKAVIHLVEHIARQVIQR 146 G + EA+ A A ++QL+ + D+ I ++ + ARQVI + Sbjct: 75 GLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQ 134 Query: 147 ELVTDSGQIASVLRDALKLLPMGAQNLRISINPQDFLLVKAM--RERHEESWKIVEDEDL 204 D+ + ++ L+ P+ + ++ ++P D V M W++ D L Sbjct: 135 TPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTL 194 Query: 205 LPGGCRIETEHSRIDASVETR 225 PGGC++ + +DASV TR Sbjct: 195 HPGGCKVSADEGDLDASVATR 215
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 299 bits (768), Expect = e-103 Identities = 105/332 (31%), Positives = 204/332 (61%) Query: 2 VAKLSKVEKAAVLLLSLGETDAAQVLRHMGPKEVQKVGVAMAQMRNVHREQVEEVMSEFV 61 V+ L+ +KAA+LL+S+G +++V +++ +E++ + +A++ + E + V+ EF Sbjct: 12 VSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFK 71 Query: 62 DIVGDQTSLGVGSDGYIRKMLTQALGEDKANGLIDRILLGGNTSGLDSLKWMEPRAVADV 121 +++ Q + G Y R++L ++LG KA +I+ + + + ++ +P + + Sbjct: 72 ELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNF 131 Query: 122 IRFEHPQIQAIVVAYLDADQAGEVLGHFDHKVRLDIILRVSSLNTVQPAALKELNQILEK 181 I+ EHPQ A++++YLD +A +L +V+ ++ R++ ++ P ++E+ ++LEK Sbjct: 132 IQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEK 191 Query: 182 QFSGNANTSRTTLGGIKRAADIMNFLDSSIEGALMDSIREVDEDLSVQIEDLMFVFNNLS 241 + + ++ T+ GG+ +I+N D E +++S+ E D +L+ +I+ MFVF ++ Sbjct: 192 KLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIV 251 Query: 242 DVDDRGIQALLREVSSDVLVLALKGSDEAIKEKIFKNMSKRAAELLRDDLEAKGPVRVSD 301 +DDR IQ +LRE+ L ALK D ++EKIFKNMSKRAA +L++D+E GP R D Sbjct: 252 LLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKD 311 Query: 302 VETAQKEILTIARRMAEAGEIVLGGKGGEEMI 333 VE +Q++I+++ R++ E GEIV+ G E+++ Sbjct: 312 VEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 514 bits (1326), Expect = e-180 Identities = 198/576 (34%), Positives = 300/576 (52%), Gaps = 40/576 (6%) Query: 27 LENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAA 86 LE L+ + +I L+V +A+VAI A+VLW++ PDYR L+ +L+ D I+ LT Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72 Query: 87 NINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATR 146 NI Y SGA+ V +D V R++LAQ G+ + +GFE+LD+++ G SQF E Sbjct: 73 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPK-GGAVGFELLDQEK-FGISQFSEQVN 130 Query: 147 YRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPSQV 206 Y+R LEGELARTI L VK ARVHLA+PK S+FVR+ + PSASV V L GR+L+ Q+ Sbjct: 131 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 190 Query: 207 MAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQ 266 A+++LV+++V L +T+VDQ G LL+ Q+ S + Q ++ +E + +R++ Sbjct: 191 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLT-QSNTSGRDLNDAQLKFANDVESRIQRRIE 249 Query: 267 NILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPA----LRSEQSVNEQRSSSSSTG 322 IL PI+GN A+V+A +DF+ E T E ++P+ A LRS Q ++ + G Sbjct: 250 AILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPG 309 Query: 323 GVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 GVPGALSNQP P AP P N Q +T + + P Sbjct: 310 GVPGALSNQPAPPNEAPIAT--------------PPTNQQNAQNTPQTSTSTNSNSAGPR 355 Query: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLAR 442 + T N+E+DR+I HTK G + RLSVAVVV+ + P +A + + Sbjct: 356 STQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADG-----KPLPLTADQMKQ 410 Query: 443 FTRLVQDAVGFDASRGDSVSVINVPFSIERAEVLPEASFYSQPWFWDIVKQAVGVIFILI 502 L ++A+GF RGD+++V+N PFS E F+ Q F D + A + +L+ Sbjct: 411 IEDLTREAMGFSDKRGDTLNVVNSPFSAV-DNTGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 503 LVF----GVLRPVLTNIT-TGKSKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSILL 557 + + +RP LT K+ + ++ LS D + L Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQE---TEEAVEVRLSKDEQLQQRRANQRL 526 Query: 558 PSPTEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTD 593 G + I+ + DP VA V+++W++ D Sbjct: 527 -----GAEVMSQRIREMSDNDPRVVALVIRQWMSND 557
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 78.5 bits (193), Expect = 2e-22 Identities = 39/92 (42%), Positives = 52/92 (56%) Query: 18 QMDAMSAPKPVSGAQEAGASSFADMLGQAVNKVAQTQQASSQLANAFEIGKSGVDLTDVM 77 Q+ A + + SFA L A+++++ TQ A+ A F +G+ GV L DVM Sbjct: 12 QLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVM 71 Query: 78 ISSQKASVSFQALTQVRNKLVQAYQDIMQMPV 109 QKASVS Q QVRNKLV AYQ++M M V Sbjct: 72 TDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 495 bits (1275), Expect = e-175 Identities = 175/479 (36%), Positives = 259/479 (54%), Gaps = 20/479 (4%) Query: 5 VLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEAQPFSLVISDVNMPGMDGHQL 64 +L+ +DD ++R L + L AGY + +A A LV++DV MP + L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 LSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVAR------HA 118 L ++ P LPVL+M+A A+ A +GA DYL KPF+ LI ++ R Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 119 LGRLEPAERDGP--IAVEPASIQLLNLASRVAKSDSTVLISGESGTGKEVLARFIHQNSP 176 +LE +DG + A ++ + +R+ ++D T++I+GESGTGKE++AR +H Sbjct: 126 PSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGK 185 Query: 177 RADKPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTILLDEISEMPL 236 R + PF+AIN AAIP +++E+ LFGHEKG+FTGA G+FEQA+GGT+ LDEI +MP+ Sbjct: 186 RRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPM 245 Query: 237 GLQAKLLRVLQEREVERVGARKPIILDIRVVATTNRDLAGEVAAGRFREDLFYRLSVFPL 296 Q +LLRVLQ+ E VG R PI D+R+VA TN+DL + G FREDL+YRL+V PL Sbjct: 246 DAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPL 305 Query: 297 AWQALRQRTADILPLAERLLAKHVNKMKHAPVRLSAEAQQCLVSYPWPGNVRELDNAVQR 356 LR R DI L + + K R EA + + ++PWPGNVREL+N V+R Sbjct: 306 RLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRR 364 Query: 357 ALILQQGGVIQAQDFCLSG-------PVTSLPAAAVVEAVPSLPVTSSPDNAGAGGNA-E 408 L VI + P+ A + ++ + + G+A Sbjct: 365 LTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALP 424 Query: 409 SVGALGDDLRRREFQMIIDTLRAERGRRKEAAERLGISPRTLRYKLAQMRDAGMDVEAY 467 G L E+ +I+ L A RG + +AA+ LG++ TLR K+ ++ G+ V Sbjct: 425 PSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL---GVSVYRS 480
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 131 bits (330), Expect = 3e-39 Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 9/255 (3%) Query: 4 NPFSLSGKLIMVTGASSGIGSQVAIWLSQQGARVVLVARNTERLEATRRQLHGESHGVE- 62 N + GK+ +TGA+ GIG VA L+ QGA + V N E+LE L E+ E Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 63 -PFDLLDGHAVPAWMKTLASTYGPFDGLVHAAGVQMPLPIRALAIEQWETVFATNVTSGF 121 P D+ D A+ + GP D LV+ AGV P I +L+ E+WE F+ N T F Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 122 SLIKSFRQKGVFVQGASIVLLSSVMAQAAQPSLMAYCASKGAVESMVRAAALELARDGIR 181 + +S + + + SIV + S A + S+ AY +SK A + LELA IR Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 182 VNAIAPGIVRTEMTRKL------EDLVGIDSMAVVEQKHPLG-FGEPLDIAYAVNYLLSP 234 N ++PG T+M L + V S+ + PL +P DIA AV +L+S Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 235 AARWVTGTAMVVDGG 249 A +T + VDGG Sbjct: 242 QAGHITMHNLCVDGG 256
>PF06580#Sensor histidine kinase Length = 349 Score = 28.7 bits (64), Expect = 0.022 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 22/101 (21%) Query: 134 IIVNAI--GFARE----QIVISIGEEGGQLKITLNDDGPGYPAYLIERQTEYVQGINQGS 187 ++ N I G A+ +I++ ++ G + + + + G + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL--------------ALKNTK 308 Query: 188 GSTGLGLYFAAHIARLHVRNGMRGRIEIANGGVLGGAMFSI 228 STG GL RL + G +I+++ AM I Sbjct: 309 ESTGTGLQNVRE--RLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.0 bits (122), Expect = 7e-09 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 7/135 (5%) Query: 10 LIVDDFSDFRSSVRSMLRELGVKEVDTADTGEQALRMCSQKRYDFVLHDFNLGDGRKNGQ 69 L+ DD + R+ + L G +V R + D V+ D + D N Sbjct: 7 LVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWIAAGDGDLVVTDVVMPDE--NAF 63 Query: 70 QVLEDLMVERLLSYESVFIMVTAENSQAMVMSALEWEPDGYLTKPFNRAGLAQRLEK-LV 128 +L + R + ++++A+N+ + A E YL KPF+ L + + L Sbjct: 64 DLLPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 129 QRKTLLKPILQALDR 143 + K + Sbjct: 121 EPKRRPSKLEDDSQD 135
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.5 bits (63), Expect = 0.022 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 116 QLTQQVTELTDQLAGIDNTWKTRVQGMQETLDARKKLVDELEARTKTLNDQLADSQAE 173 Q+ + + E +LA ++ K + + T + +L +LEA K L ++LA QAE Sbjct: 397 QVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAK-QAE 453
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 103 bits (259), Expect = 7e-28 Identities = 40/116 (34%), Positives = 64/116 (55%) Query: 4 LLLIDDDQELCELLSSWLSQEGFQVRACHDGASARQALADAAPTAVVLDVMLPDGSGLEL 63 +L+ DDD + +L+ LS+ G+ VR + A+ + +A VV DV++PD + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 LKQLRNDHPDLPVVMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119 L +++ PDLPV+++SA+ + I E GA DYL KP D EL + L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 29.2 bits (65), Expect = 0.007 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%) Query: 1 MRKTLIALMFATALPTIAMA 20 M+K+LIAL A ALP AMA Sbjct: 1 MKKSLIALTLA-ALPVAAMA 19
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 111 bits (278), Expect = 2e-28 Identities = 81/402 (20%), Positives = 155/402 (38%), Gaps = 26/402 (6%) Query: 19 IGLSLATFMQVLDTTIANVALPTIAGNLGVSSEQSTWVITSFAVSNAIALPLTGWLSRRF 78 I L + +F VL+ + NV+LP IA + + WV T+F ++ +I + G LS + Sbjct: 17 IWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQL 76 Query: 79 GEVKLFLWATILFVMASFLCGISQSMPELVGFRALQGMVAGPLYPMSQTLLIAVY-PPAK 137 G +L L+ I+ S + + S L+ +P +++A Y P Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN 136 Query: 138 RGMALALLAMVTVVAPIAGPILGGWITDSYSWPWIFF---INIPIGLFAVLVVRSQMTKR 194 RG A L+ + + GP +GG I W ++ I I F + +++ ++ + Sbjct: 137 RGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIK 196 Query: 195 LVSTAHQPLDYIGLLALIVGVGALQIVLDKGNDLDWFESNFIIFGSLISLVALVFFVIWE 254 D G++ + VG+ + F +++ I ++S+++ + FV Sbjct: 197 ------GHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHI 240 Query: 255 MTDKHPIVNLRLFAYRNFRIGTLVMIGGYSGFFGINLILPQWLQTQMGYTATWAGLAVAP 314 P V+ L F IG L + G ++P ++ + G + Sbjct: 241 RKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIF 300 Query: 315 IGILPVLMS-PFVGKYAHKFDLRLLAGLAFLAMGLSCFMRAGF--NTDVDFEHVAMVQLF 371 G + V++ G + + + + +S F+ A F T F + +V + Sbjct: 301 PGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS-FLTASFLLETTSWFMTIIIVFVL 359 Query: 372 MGIGVALFFMPTLSILLSDLPPNQIADGSGLATFLRTLGGSF 413 G+ + T I+ S L + G L F L Sbjct: 360 GGLSFTKTVIST--IVSSSLKQQEAGAGMSLLNFTSFLSEGT 399
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 89.5 bits (222), Expect = 1e-21 Identities = 56/417 (13%), Positives = 115/417 (27%), Gaps = 102/417 (24%) Query: 19 KPGKRKFLLIGLAVIVVILGLAIWAWYEFYGQWSEETDDAYVNGNVV------EITLLVT 72 P R+ L+ ++ ++ I + + A NG + EI + Sbjct: 51 TPVSRRPRLVAYFIMGFLVIAFILSV------LGQVEIVATANGKLTHSGRSKEIKPIEN 104 Query: 73 GTVISIGADDGDLVHEGQVLLKFDPSDAEVSLQSAEANL--------------------- 111 V I +G+ V +G VLLK AE +++L Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 112 -----------------GKVVRQVRGLYSNVDGMKAQLAAQRTAVQTA------------ 142 +V+R + + Q + + Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 143 ---------QENYNRRRSLAAGGAISQEELSHSRDSLTSAQSELN--------------N 179 + + SL AI++ + + A +EL + Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILS 284 Query: 180 IQQQLSTSVALVDDTVVSSHPDVKAAASQLRQ----AFLANARSTLVAPVTGYVAKRSVQ 235 +++ L + ++ L S + APV+ V + V Sbjct: 285 AKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVH 344 Query: 236 -LGQRIQPGTATMAVIPLDQ-LWIDANFKETQLGKMRIGQPVEISSDLYGSDV--KYSGT 291 G + M ++P D L + A + +G + +GQ I + + G Sbjct: 345 TEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGK 404 Query: 292 IDSLGAGTGSAFALLPAQNATGNWIKIVQRVPVRVHINPEELAKHPLRIGLSTTVEV 348 + ++ G ++ + + PL G++ T E+ Sbjct: 405 VKNINLDA-------IEDQRLGLVFNVIISIE--ENCLSTGNKNIPLSSGMAVTAEI 452
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.6 bits (204), Expect = 2e-20 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 2 KLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGGLD 61 +LV +D+A +R L L+ AG+ V +NA + + DL V D+ +P D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEE-LEARLNALLRRSS 120 L+ +++ P+L+++A+ + ++ GA DY+ KPF E + AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 106 bits (265), Expect = 2e-30 Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 9/186 (4%) Query: 26 ASIQRSVAKRQAEFLAGRLCAREAMRQLDGRLHVPAVGEDRAPVWPADVCGSITHSTGWA 85 ++ + KR+AE LAGR+ A A+R++ G VP +G+ R P+WP + GSI+H A Sbjct: 37 DRLRSAGRKRKAEHLAGRIAAVHALREV-GVRTVPGMGDKRQPLWPDGLFGSISHCATTA 95 Query: 86 AAVVANKRQWRGLGLDTENLLSHDRASRLAGEILTTAELADMAAGAQDQVALRVTLTFSI 145 AV++ + +G+D E ++S A+ LA I+ + E + A L +TL FS Sbjct: 96 LAVISR----QRIGIDIEKIMSQHTATELAPSIIDSDERQILQASL-LPFPLALTLAFSA 150 Query: 146 KEALFKALYPIVQKRFYFEDAQLLEWSADGSARLRLLIDLSSEWHAGKELDGQFSVLGDH 205 KE+++KA + F A++ +A L LL ++ A + + ++ + Sbjct: 151 KESVYKA-FSDRVTLPGFNSAKVTSLTA-THISLHLLPAFAAT-MAERTVRTEWFQRDNS 207 Query: 206 LLSLVA 211 +++LV+ Sbjct: 208 VITLVS 213
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 69.3 bits (169), Expect = 4e-16 Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 22/219 (10%) Query: 36 SRPDSRPVVALPDLLQAERLDLLLLSIYGPQ-LMPSQLPVLVSQWAKFYFMQIIPPVLVA 94 S P+ L LL IY Q +M + L+S WA++Y ++PP+++A Sbjct: 61 SSPN-----VLSSLLAVYSDH-----IYRNQPMMIRENKPLISLWAQWYIGLMVPPLMLA 110 Query: 95 SLVHGWHWPLALEQVALAVDERGLPNGVRLAGEGEAWR-GIPADPFQQFAGLLDDNLQPF 153 L ++ E E G + + + P P + L+ L P Sbjct: 111 LLTQEKALDVSPEHFHAEFHETGRVACFWV--DVCEDKNATPHSPQHRMETLISQALVPV 168 Query: 154 IAALSAYGGLPCAVLWSSAGDYLEGCLAQLATCSDVSLAAGL--ALLSEKKRPDGRANPL 211 + AL A G + ++WS+ G + L ++ + L AL EK +G NPL Sbjct: 169 VQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEKTLTNGEDNPL 228 Query: 212 FQAVRYVPQAQGGKPRRQRRVCCLSHRVEWVGRCEHCPL 250 + R V G RR CC +R+ V +C C L Sbjct: 229 W---RTVVLRDG---LLVRRTCCQRYRLPDVQQCGDCTL 261
>PF06580#Sensor histidine kinase Length = 349 Score = 38.7 bits (90), Expect = 4e-05 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 25/107 (23%) Query: 431 VQNLVSNAMRHA------ENEVRISYRLEAQQCRIDVDDDGPGVPEEAWEQIFTPFMRID 484 VQ LV N ++H ++ + + ++V++ G + E Sbjct: 260 VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE---------- 309 Query: 485 DSRTRASGGHGLGLSIVR-RIIHWHEGRALIGRSASLGGACFSLSWP 530 G GL VR R+ + A I S G + P Sbjct: 310 --------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 5e-19 Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 1/146 (0%) Query: 7 HVLIVEDDQRLAELTSDYLHNNGLRVSIEGNGALAAARIIAEQPDLVILDLMLPGEDGFS 66 +L+ +DD + + + L G V I N A I A DLV+ D+++P E+ F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 67 ICRSVRDRYDG-PILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEA 125 + ++ P+L+++A+ I+ + GA D++ KP L+ I L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 126 PQVPAAELRRLVFGPLVVDNALREAW 151 + + + A++E + Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIY 150
>adhesinb#Adhesin B signature. Length = 310 Score = 27.5 bits (61), Expect = 0.019 Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 18 LRGLKLAALALGSTFILAGCAGNPPSEQYAVSQSAV 53 ++ + L L + LA C+ S + S+ V Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNV 36
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 118 bits (298), Expect = 1e-33 Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 11/128 (8%) Query: 130 AKQTERGTLVTFGDVLFDYNKADLKPTAQGDIGKLAAFLQEN--PDRKVIVEGYTDSTGS 187 A + + DVLF++NKA LKP Q + +L + L D V+V GYTD GS Sbjct: 207 APEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGS 266 Query: 188 ASYNQSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNTSNSGR---------AM 238 +YNQ LSERRA SV L+ G+ ++ G G+ PV NT ++ + A Sbjct: 267 DAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAP 326 Query: 239 NRRVEVTI 246 +RRVE+ + Sbjct: 327 DRRVEIEV 334
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.3 bits (125), Expect = 2e-10 Identities = 19/84 (22%), Positives = 38/84 (45%) Query: 28 REGSEQRRQVILDAAMRIVVRDGVRAVRHRAVAAEASVPLSATTYYFKDINDLLTDAFAQ 87 ++ +++ RQ ILD A+R+ + GV + +A A V A ++FKD +DL ++ + Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 88 YVQRSADYLARLWQNTEGILREMM 111 + G ++ Sbjct: 66 SESNIGELELEYQAKFPGDPLSVL 89
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 32.4 bits (74), Expect = 0.003 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Query: 77 SSGLADAKDLLLMSAEEE-DQAAVDDVAAEVERLRESLEKL--EFRRM 121 SSG+A AK + + + ++ ++ DV+ E+E+L +LEK E R + Sbjct: 11 SSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAI 58
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.9 bits (153), Expect = 5e-13 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Query: 19 VLLVDDQAMIGEAVRRGLAGHESIDFHFCADPHQAIAQAVQIKPTVILQDLVMPGLDGLT 78 +L+ DD A I + + L+ D ++ +++ D+VMP + Sbjct: 6 ILVADDDAAIRTVLNQALSR-AGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 79 LVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFSAGANDYLVKLPDNIELVARIR 132 L+ + D+P++V+S + + A GA DYL K D EL+ I Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.5 bits (113), Expect = 4e-08 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 3/104 (2%) Query: 2 KIAIVNDMPMAIEALRRALAFEPAHQIIWVASNGADAVQRCVEQTPDLILMDLIMPVMDG 61 I + +D L +AL+ + SN A + DL++ D++MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVR--ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 VEATRRIMAETPCAIVIVTVDREQNMRRVFEAMGHGALDVVDTP 105 + RI P V+V + M + +A GA D + P Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAI-KASEKGAYDYLPKP 105
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 3e-16 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 668 SRKRVLVVDDSLTVRELERKLLVGRGYEVSVAVDGMDGWNALRAGDFDLLITDIDMPRMD 727 + +LV DD +R + + L GY+V + + W + AGD DL++TD+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 728 GIELVTLLRRDTRLQSLPVMVVSYKDREEDRRRGLDAGADYYLAKASFHDDALLDAV 784 +L+ +++ LPV+V+S ++ + + GA YL K F L+ + Sbjct: 62 AFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK-PFDLTELIGII 115
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 32.7 bits (74), Expect = 0.003 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 273 PAWTPAPVAAPVAPRPAPDAP-ARAPAPRPVARTSAAFAPIVKPVAVTGNS-----EVSA 326 PA PAP P P+P P A AP P SAA V V S E +A Sbjct: 573 PAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNA 632 Query: 327 LLDRIAGL 334 L R+ L Sbjct: 633 LSKRLGEL 640
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 30.2 bits (68), Expect = 0.015 Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 284 EKNRMVASKNEKVQKLEEKSPLAAAVRSLQILFEDMNIRMMDAHQSATHLKDLWTMLAAY 343 EK + K+ E LA A++ FE + M+ A +++ HL + LA Y Sbjct: 99 EKPHLSQLMAAVRSKVMEGHSLADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADY 158 Query: 344 IDRS 347 ++ Sbjct: 159 TEQR 162
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 431 bits (1110), Expect = e-151 Identities = 168/477 (35%), Positives = 241/477 (50%), Gaps = 51/477 (10%) Query: 4 VIVVDDEAPIRQAVEQWLTLSGFEVQVFARAEECLAQLPEHFPGVVLTDVRMPGMSGLEL 63 ++V DD+A IR + Q L+ +G++V++ + A + +V+TDV MP + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 LSRLQGMDPDLPVILLTGHGDVPMAVEAMREGAYDFLEKPFSPETLISNLRRALEKRQLV 123 L R++ PDLPV++++ A++A +GAYD+L KPF LI + RAL + + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK-- 123 Query: 124 LENRRLHEQADARTRLDATLLGESPSLQTLRRQVLELAQLPVNVIIRGETGSGKELVARC 183 R + + ++ L+G S ++Q + R + L Q + ++I GE+G+GKELVAR Sbjct: 124 ----RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 184 LHDFGPRAGKPFVALNCAAIPEHLFEAELFGHESGAFTGAQGKRIGKLEYADGGTVFLDE 243 LHD+G R PFVA+N AAIP L E+ELFGHE GAFTGAQ + G+ E A+GGT+FLDE Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239 Query: 244 IESMPMAQQVKLLRVLQDKRLERLGSNQSIDVNLRIIAATKPDLLEEARAGRFREDLAYR 303 I MPM Q +LLRVLQ +G I ++RI+AAT DL + G FREDL YR Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299 Query: 304 LNVAELRLPPLRERLEDIAQLFSHFARAAAERMGRESPALSAARLSQLLSHDWPGNVREL 363 LNV LRLPPLR+R EDI L HF + A + G + L + +H WPGNVREL Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVREL 358 Query: 364 ANASERQAL--------------------------------------------GLELTSP 379 N R + + Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 380 QPDTQLQGHSLAARQEAFEAQCLRASLARHKGDIKAVLNELQLPRRTLNEKMQRHAL 436 D E + A+L +G+ + L L R TL +K++ + Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.7 bits (220), Expect = 1e-20 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 670 VLMVEDNQDIGTFTRPMLEQLGFQVLWVKSAAEALHELSGNPENFHVVFSDIAMPGMSGL 729 +L+ +D+ I T L + G+ V +AA ++ +V +D+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD--GDLVVTDVVMPDENAF 63 Query: 730 ELYAEIEARYPWMPVVLTTGYSTEFATIAKDEAHRFDLLQKPYSREDLAAILQRAVSRTG 789 +L I+ P +PV++ + +T I E +D L KP+ +L I+ RA++ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 790 EQ 791 + Sbjct: 124 RR 125
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 122 bits (307), Expect = 1e-32 Identities = 76/354 (21%), Positives = 141/354 (39%), Gaps = 52/354 (14%) Query: 3 VGIDLGTTNSLVAVWRDGSSELVTNALGETLTPSVVGLDDEGQ------ILVGKAARERL 56 + IDLGT N+L+ V G +V N PSVV + + VG A++ L Sbjct: 13 LSIDLGTANTLIYVKGQG---IVLN------EPSVVAIRQDRAGSPKSVAAVGHDAKQML 63 Query: 57 QTHPEKTTALFKRYMGSAQEIRLGSATYRPEELSSLVLKSLKADVERAFGEPVTEAVISV 116 P A+ G + + E++ +K + +F P ++ V Sbjct: 64 GRTPGNIAAIRPMKDGVIADF------FVTEKMLQHFIKQVH---SNSFMRPSPRVLVCV 114 Query: 117 PAYFSDAQRKATRIAGELAGLKVEKLINEPTAAALAYGLHQKEGETSFLVFDLGGGTFDI 176 P + +R+A R + + AG + LI EP AAA+ GL E S +V D+GGGT ++ Sbjct: 115 PVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGS-MVVDIGGGTTEV 173 Query: 177 SILELFDGVMEVRASAGDNFLGGEDFDRLLVEHFLTLHRDEQDFPGKELVTPSLRREAER 236 +++ L V + +GG+ FD ++ + + + AER Sbjct: 174 AVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNY---------GSLIG--EATAER 217 Query: 237 VRKALG----QENSVDLVLRHADREW----RKTITQEQMNDLFAPLLARLRAPIERALRD 288 ++ +G + ++ +R + T+ ++ + L + + + AL Sbjct: 218 IKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQ 277 Query: 289 AKIR-VADLDE--ILLVGGTTRMPLIRKLAAGMFGRFPAITLNPDEVVAQGAAI 339 +D+ E ++L GG + + +L G + +P VA+G Sbjct: 278 CPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGK 331
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 148 bits (374), Expect = 1e-41 Identities = 101/425 (23%), Positives = 191/425 (44%), Gaps = 31/425 (7%) Query: 2 TSLTQTPPAIRSILFALMMAVLLSALDQTIVAVSMPAISAQFSDI-DLLAWVISAYMVSL 60 TS +Q+ IL L + S L++ ++ VS+P I+ F+ WV +A+M++ Sbjct: 3 TSYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTF 62 Query: 61 TVAVPIYGKLGDLYGRRKLMLFGLGLFTLASLFCGMAQSM-EQLVLARVLQGIGAGGMVS 119 ++ +YGKL D G ++L+LFG+ + S+ + S L++AR +QG GA + Sbjct: 63 SIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPA 122 Query: 120 VSQAIIADIVPPRERGRYQGYFSSMYALASVAGPVLGGLMTEYLSWRWVFLINLPLGAAA 179 + ++A +P RG+ G S+ A+ GP +GG++ Y+ W +L+ +P+ Sbjct: 123 LVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPM---I 177 Query: 180 LIVAYRTLVGLPVPQ--RKPIIDYLGTVLMIIGLTALLLGITEIGQGHGLGDFEVQLLLG 237 I+ L+ L + K D G +LM +G+ +L T L Sbjct: 178 TIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISF----------LI 227 Query: 238 TALLTLGIFVWYERRTAEPLLPMHLFTNK---SAVLCWCTVFFTSFQAISLIVLMPLRYQ 294 ++L+ IFV + R+ +P + L N VLC +F T + ++P + Sbjct: 228 VSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGT---VAGFVSMVPYMMK 284 Query: 295 TVTG-GGADSAALHLLPLAIGMPMGAYFAGRRTAQTGRYKPLILTGALLMPIAILGMAFT 353 V A+ ++ + P + + + Y G + G L + G + ++ L +F Sbjct: 285 DVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNI-GVTFLSVSFLTASFL 343 Query: 354 P--PQSLIAMSLFMVLTGMQFPTSLVGT--QNSVQPRDMGVATSTTNLFRSLGGAVGVAL 409 + + + VL G+ F +++ T +S++ ++ G S N L G+A+ Sbjct: 344 LETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAI 403 Query: 410 MSALL 414 + LL Sbjct: 404 VGGLL 408
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 155 bits (394), Expect = 7e-50 Identities = 82/209 (39%), Positives = 125/209 (59%) Query: 1 MVRRTKEEAQITRSQILEAAEQAFYERGVARTTLADIATLAGVTRGAIYWHFNNKADLVQ 60 M R+TK+EAQ TR IL+ A + F ++GV+ T+L +IA AGVTRGAIYWHF +K+DL Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AMLDSLQEPLDEMAQASQSEEEEDPLGCMRNLLIHLFHELALDPKTRRINEILFHKCEFT 120 + + + + E+ Q++ DPL +R +LIH+ + + R + EI+FHKCEF Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 121 DEMCDFRRQRQDNAIQCHDRITLGLNNAVRQGQLPKDLDTARAAVALFSCVNGIIYQWLL 180 EM ++ +++ ++ +DRI L + + LP DL T RAA+ + ++G++ WL Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 181 VPDSFSLPAEAEQLVDVCLDMLRFSPTLR 209 P SF L EA V + L+M PTLR Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLR 209
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.2 bits (94), Expect = 1e-05 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 8/100 (8%) Query: 66 PGRTTAF-RVAEVRPQVNGIILKRLFTEGGDVKAGQQLYQIDPAVYEANANSAKATLQSA 124 G+ T R E++P N I+ + + EG V+ G L ++ EA+ +++L A Sbjct: 87 NGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146 Query: 125 KSMSDRYKQLVSEQAVSRQ-EYDTAQASTQEAQAALQTAQ 163 + RY Q +SR E + + Q Sbjct: 147 RLEQTRY------QILSRSIELNKLPELKLPDEPYFQNVS 180
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1295 bits (3353), Expect = 0.0 Identities = 665/1034 (64%), Positives = 826/1034 (79%), Gaps = 4/1034 (0%) Query: 1 MSKFFIDRPIFAWVIALVIMLVGALSISSLPINQYPSIAPPAIGIQVTYPGASAQTVQDT 60 M+ FFI RPIFAWV+A+++M+ GAL+I LP+ QYP+IAPPA+ + YPGA AQTVQDT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNLATPLLPQ 120 V QVIEQ +NGIDNL Y+SS S+S GS+TIT TF GT+PD AQVQVQNKL LATPLLPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 EVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVGDFQVFGS 180 EVQQQGI V K+ ++LMV G VS++ ++D+++Y+ SN++D +SR +GVGD Q+FG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNATIIGKTRL 240 QYAMRIWLD LN ++LTPVDV N + QN Q+++GQLGG P++ GQQLNA+II +TR Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANAL 300 + E+FG + L+VN+DGS VRLKDVA V LG ENY+ ++ +GKPA+GL IKLATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 DTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQ 360 DTAKAI+A ++ L+PFFP GMKV+YPYDTTP V SI+ VV TL EAI+LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 N RAT+I T+ VPVVLLGTF ILAAFG++INTLTMFGMVLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 EEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMAL 480 E+KL P++AT KSM+QIQGALVGIA+VLSAV +PMAFFGGSTG IY+QFSITIVSAMAL Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRTFDRSVLSYERGVGNMLKHKWP 540 SV+VALI TPALCAT+LKP+ +H + K GFFGWFN TFD SV Y VG +L Sbjct: 481 SVLVALILTPALCATLLKPV-SAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 541 AYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTPAGSSTERTQEVIDNMREYLLT 600 L Y LI AGMV +F+R+P++FLPEEDQGV IQ PAG++ ERTQ+V+D + +Y L Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 601 KESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS-NNSVFELAKRAQGYFFSLRD 659 E V+SVF+VNGF+F+G+ Q++ +AFV LKPWEER+ NS + RA+ +RD Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 660 AMVFAVVPPSVLELGNATGFDVYLQDQGGVGHDKLMEARNQFLGMAAQSKI-LAGVRPNG 718 V P+++ELG ATGFD L DQ G+GHD L +ARNQ LGMAAQ L VRPNG Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 719 LNDEPQYQLIIDDERASALGITLSDINNTLSTALGGSYVNDFIDRGRVKKVYIQGDAGAR 778 L D Q++L +D E+A ALG++LSDIN T+STALGG+YVNDFIDRGRVKK+Y+Q DA R Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 779 MTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTPAPGYSSGEA 838 M PED+ K YVR+++GEMVPFSAF + W YGSP+L RYNG+ + E+ G APG SSG+A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 839 MAEVEALAKKLPQGIGISWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPIA 898 MA +E LA KLP GIG WTG+SY+ERLSG+QAPAL A+S +VVFLCLAALYESWSIP++ Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 899 VILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHE-QGKSL 957 V+LVVPLG++G L+A +L NDV+F VGLL T+GL+AKNAILIVEFAK+L E +GK + Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 958 VDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGMITAVILAIF 1017 V++ + A RMRLRPI+MTS+AFILGV+PLAIS GAGSG+Q+++G GV+GGM++A +LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1018 WVPLFFVSVSGLFK 1031 +VP+FFV + FK Sbjct: 1020 FVPVFFVVIRRCFK 1033
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.3 bits (89), Expect = 4e-05 Identities = 70/391 (17%), Positives = 138/391 (35%), Gaps = 58/391 (14%) Query: 76 IGGWLFGRVADKHGRKNSMLISVTMMCAGSLIIACLPTYASIGAWAPALLLMARLLQGLS 135 IG ++G+++D+ G K +L + + C GS+I ++ S+ L+MAR +QG Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSL-------LIMARFIQGAG 116 Query: 136 VGG----EYGTTATYMSEVALRGQRGFYASFQYVT-----LIGGQLL------------- 173 A Y+ + G S + IGG + Sbjct: 117 AAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM 176 Query: 174 -AVLTVVILQQFLTTEELRDYGWRIPFVIGAAAAIIALLLRRTLNETT------------ 220 ++TV L + L E + I +I + I+ +L T + Sbjct: 177 ITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIF 236 Query: 221 TAESRQDKDAGSIAALFKHHAAAFITVLGYTAGGSLI-FYTFTTYMQKYLVNTGGMEAKT 279 R+ D L K+ + G G++ F + YM K + A+ Sbjct: 237 VKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDV--HQLSTAEI 294 Query: 280 ASYIMTGALFLYMCMQPFFGMLADRIGRRNSMLLFGALGTLCTVPILMTLKTTTNPFIAF 339 S I+ + G+L DR G + + ++ + L+TT+ F+ Sbjct: 295 GSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSW-FMTI 353 Query: 340 VLITLALAIVSFYTSISGLVKAEMFPPQVRA----------LGVGLAYAVANAMFGGSAE 389 +++ + + T IS +V + + + A L G A+ + S Sbjct: 354 IIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL--SIP 411 Query: 390 WVALKLKSAGMENSFYWYVTVMMAVAFLFSL 420 + +L ++ S Y Y +++ + + + Sbjct: 412 LLDQRLLPMEVDQSTYLYSNLLLLFSGIIVI 442
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 54.1 bits (130), Expect = 4e-10 Identities = 44/197 (22%), Positives = 83/197 (42%), Gaps = 5/197 (2%) Query: 26 LPDVAADLGVSIPGAGWLVTGYALGVAVGAPFMAMATAKLPRKAALVTLMGIFIIGNLLC 85 LPD+A D W+ T + L ++G + +L K L+ + I G+++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 86 ALA-SDYNVLMFARVVTALCHGAFFGIGSVVAAGLVPANRRASAVALMFTGLTLANVLGV 144 + S +++L+ AR + AF + VV A +P R A L+ + + + +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 145 PLGTALGQYAGWRSTFWAVTVIGVIALIGLIRFLPTN-RNEEKLDMRAELAALKGAGIWL 203 +G + Y W S + +I +I + L++ L R + D++ L GI Sbjct: 157 AIGGMIAHYIHW-SYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKG--IILMSVGIVF 213 Query: 204 SLTMTALFSASMFTLFT 220 + T +S S + Sbjct: 214 FMLFTTSYSISFLIVSV 230
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 34.2 bits (78), Expect = 3e-04 Identities = 27/106 (25%), Positives = 35/106 (33%) Query: 45 DYPEDLVRQQVKPPVRFKPPVKPPVKPPVKPPVKGAGPVKPPVRPPVKPPVKVKKPVRPP 104 D Q PV P P+ P K KP +P KP KV++ + Sbjct: 54 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 113 Query: 105 VKPVIKPPVAQKLTPAPEARSRLDKLLAVINTVTGVLQLVHPLNSV 150 VKPV P + AP + A VT V L+ Sbjct: 114 VKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRN 159
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.004 Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 24/213 (11%) Query: 75 QVSLMEQQLVATQESFAR--ISEEAAGRLQDISGKVVATEALSSDGEALKQR-IKLLEAQ 131 + L+ + R I + + K+ + E R L++ Q Sbjct: 135 DTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQ 194 Query: 132 LEDQDKQREGVEGQQGSLDKRLEQMAAQTAQQHSESAQLQEQLKSVVAELTTL--KAALP 189 Q+ E + A+ + + S + +L ++L K A+ Sbjct: 195 FSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD----FSSLLHKQAIA 250 Query: 190 DLKTAQADQGKLDAQIKSVAADVATLKKQGNPSAAVERLEQDLMVLKSEQENRPAPSAEA 249 + + + ++ K Q +E++E +++ K E + + Sbjct: 251 KHAVLEQEN-----KYVEAVNELRVYKSQ------LEQIESEILSAKEEYQLV----TQL 295 Query: 250 NTAEFDAFRAQVTRNINTLTSQIQNLSQQLNAR 282 E Q T NI LT ++ ++ A Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQAS 328
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 111 bits (280), Expect = 2e-30 Identities = 80/366 (21%), Positives = 130/366 (35%), Gaps = 68/366 (18%) Query: 1 MKILVTGASGFIGGRFARFALEQGMSVR----IN-----GRRAEGVEHLVRRGAEFIQGD 51 MK LVTGA+GFIG ++ LE G V +N + +E L + G +F + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 LADPYLVRALCDD--VEAVVHCAGSVGL---WGRRQDFMQGNVQLTENIVEGCLKQRVRR 106 LAD + L E V + + + N+ NI+EGC +++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 107 LVHLSSPSIYFDGKSHRGIKEEQVPKRFHNHYAATKYLAEQKVFGAEE-FGLEVIALRPR 165 L++ SS S+Y + + + YAATK E +GL L R Sbjct: 121 LLYASSSSVYGLNR-KMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL--R 177 Query: 166 FVT-----GAGDNSIFPRLLHMQRKKRLSIVGNGLNVVDFTSMHNLNEAMLSSL------ 214 F T G D ++F M K + + G DFT + ++ EA++ Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHA 237 Query: 215 ----------LATGSALGKAYNISNGTPVPLWDAINYVMRQMHLPQVTRYRSYGLAYSAA 264 A A + YNI N +PV L D I + + + Sbjct: 238 DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLP-------- 289 Query: 265 AINEGACLLWPGRPEPTLSRMGMQVMNRDFTLDISRARHYLDYQPQVSLWTALDEFCGWW 324 L PG T + D + + P+ ++ + F W+ Sbjct: 290 --------LQPGDVLETSA-------------DTKALYEVIGFTPETTVKDGVKNFVNWY 328 Query: 325 QAQHAI 330 + + + Sbjct: 329 RDFYKV 334
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 4e-04 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 24/128 (18%) Query: 13 SLFFGVITLLLIGLGGFS--YVQIDHLRTAEQ-NIEENSLPSIQVVDDIQIALLHAR--- 66 L +I +++ +S Y + +Q I++ + S+ + Q+ L A+ Sbjct: 115 PLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMA--QEAQLMALKAQINP 172 Query: 67 ------LESIRMLASTDPAVHSTAEAKAREAIEALRSNSEFYRKNLISGEADRAQFEDAN 120 L +IR L DP KARE + +L SE R +L A + D Sbjct: 173 HFMFNALNNIRALILEDP-------TKAREMLTSL---SELMRYSLRYSNARQVSLADEL 222 Query: 121 SKMGAYID 128 + + +Y+ Sbjct: 223 TVVDSYLQ 230
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.1 bits (138), Expect = 6e-12 Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 3/114 (2%) Query: 4 RIIVADDHPLFREGMLRTIERLIPEAIIEEAGNLDEVLTLARRGDEVDTLVLDLRFPGLT 63 I+VADD R + + + R + N + G + D +V D+ P Sbjct: 5 TILVADDDAAIRTVLNQALSRA--GYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDEN 61 Query: 64 SMQTIGSLRSEFKRTSIIVVSMVDDLDTISQVMSQGADGFIGKNIDPLEIAESI 117 + + ++ ++V+S + T + +GA ++ K D E+ I Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 44.8 bits (106), Expect = 7e-07 Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 7/86 (8%) Query: 402 LSGLRVMLIEDNRNVLEATAMLLRRWGCEVQTFSSIPEI-----SVDCDLVVTDFDLDRT 456 ++G +++ +D+ + L R G +V+ S+ + + D DLVVTD + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD- 59 Query: 457 ASGADCIAYLSGLQGRRIPAIVITGH 482 + D + + + +P +V++ Sbjct: 60 ENAFDLLPRIKKARP-DLPVLVMSAQ 84
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 37.1 bits (86), Expect = 2e-04 Identities = 60/339 (17%), Positives = 98/339 (28%), Gaps = 28/339 (8%) Query: 154 VPFKAIPFGFYTRRLNEHWAIGLGAYVPFGLATDYERGFQGRAFASKSDAKVLTLQPTLS 213 VP+ ++P R + ++I G Y + R FQ T+ Sbjct: 360 VPYSSVPL--LQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAG--WTIYGGTQ 415 Query: 214 YAFNDRVSVGFGPTINQFA-GSLESDLTLNPAIADSNVKVKGKDVALGFNIGVLASLTDT 272 A + + FG N A G+L D+T + + + G+ V +N + S T+ Sbjct: 416 LA-DRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNI 474 Query: 273 TQAGLTYHSKVRYDLDCHT------EVATGAGTPAQLLSSNRYDCSLQVDTPESYELSVT 326 G Y + ++ T Q+ +L + +L+VT Sbjct: 475 QLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVT 534 Query: 327 QKLTDAWTLYAGTTWTRW--SRMKDLSFSTENIRPARGGILAASLSGAIAGGLDWHDTWA 384 Q+L TLY + + + D F S S D Sbjct: 535 QQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQML 594 Query: 385 Y-----ALGTSYRLDSHWSLRTGIR-------LDQSPTSNTNRSPRTPTGDRTIFSVGAG 432 R DS R L+ T+ + +SV G Sbjct: 595 ALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTG 654 Query: 433 YDVSKELTLD-VAYAYLKEESVDVSRANALASYSARYQN 470 Y + YA L AN S+S + Sbjct: 655 YAGGGDGNSGSTGYATLNYRG-GYGNANIGYSHSDDIKQ 692
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.6 bits (74), Expect = 3e-04 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 77 VVRSVFVDPDWHRRGVGRLLMAKLERVALETDIGLLIVPS---SLTAQEFYKALGFRL 131 ++ + V D+ ++GVG L+ K A E L++ + +++A FY F + Sbjct: 91 LIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.005 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 20/103 (19%) Query: 14 SHILRGLSFDVKVGEVTCLLGRNGVGKTTLLRVLMGLLPSKEGSVQWEGKAITQFKTHQR 73 H+ R + K L G G+GK+TL+ L+GL + T + Sbjct: 583 GHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGL--------DFFSDTHFDIGTGKD 634 Query: 74 VHAGIAYVPQGREIFGRLTVEENLLMGLSRFPGSEAKEVPAFI 116 + IA G + E L ++ F ++A+ V AF Sbjct: 635 SYEQIA---------GIVAYE---LSEMTAFRRADAEAVKAFF 665
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.5 bits (79), Expect = 1e-04 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 81 RHTVEHSVYVRADQRGKGLGPRLMASLIERARDCEKHMMVAAIESGNAASIALHERLGFK 140 +E + V D R KG+G L+ IE A++ ++ + N ++ + + F Sbjct: 89 YALIED-IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 141 TTG 143 Sbjct: 148 IGA 150
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.8 bits (64), Expect = 0.008 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 90 RAEVQKLMVLPSARGRGLGRQLMDEVEQVAVKHKRGLLHLDTEAGSV---AEAFYSALAY 146 A ++ + V R +G+G L+ + + A + L E + A FY+ + Sbjct: 89 YALIEDIAVAKDYRKKGVGTALLHKAIEWA--KENHFCGLMLETQDINISACHFYAKHHF 146 Query: 147 T 147 Sbjct: 147 I 147
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1120 bits (2899), Expect = 0.0 Identities = 427/567 (75%), Positives = 488/567 (86%), Gaps = 2/567 (0%) Query: 2 KISRQAYADMFGPTVGDKVRLADTELWIEVEKDFTTYGEEVKFGGGKVIRDGMGQGQLM- 60 ++SR AYA+MFGPTVGDKVRLADTEL+IEVEKDFTT+GEEVKFGGGKVIRDGMGQ Q+ Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 61 AADVVDTLITNALIIDHWGIVKADVGIKNGRIAAIGKAGNPDIQPDVTIAVGAATEVIAG 120 VDT+ITNALI+DHWGIVKAD+G+K+GRIAAIGKAGNPD+QP VTI VG TEVIAG Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAG 123 Query: 121 EGMILTAGGVDTHIHFICPQQIEEALMSGVTTMIGGGTGPATGTNATTVTPGPWHMARML 180 EG I+TAGG+D+HIHFICPQQIEEALMSG+T M+GGGTGPA GT ATT TPGPWH+ARM+ Sbjct: 124 EGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIARMI 183 Query: 181 QASDSFPMNIGFTGKGNVSLPGPLIEQVKAGAIGLKLHEDWGTTPAAIDNCLSVADEYDV 240 +A+D+FPMN+ F GKGN SLPG L+E V GA LKLHEDWGTTPAAID CLSVADEYDV Sbjct: 184 EAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEYDV 243 Query: 241 QVAIHSDTLNESGFVETTLAAFKNRTIHTYHTEGAGGGHAPDIIKACGSPNVLPSSTNPT 300 QV IH+DTLNESGFVE T+AA K RTIH YHTEGAGGGHAPDII+ CG PNV+PSSTNPT Sbjct: 244 QVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTNPT 303 Query: 301 RPFTRNTIDEHLDMLMVCHHLDPSIAEDVAFAESRIRRETIAAEDILHDLGAFSMLSSDS 360 RP+T NT+ EHLDMLMVCHHL P+I ED+AFAESRIR+ETIAAEDILHD+GAFS++SSDS Sbjct: 304 RPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISSDS 363 Query: 361 QAMGRVGEVIMRTWQTADKMKKQRGPLPQDGPGNDNFRAKRYIAKYTINPAITHGISHEV 420 QAMGRVGEV +RTWQTADKMK+QRG L ++ NDNFR KRYIAKYTINPAI HG+SHE+ Sbjct: 364 QAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSHEI 423 Query: 421 GSIEVGKWADLVLWRPAFFGVKPTLILKGGAIAASLMGDANASIPTPQPVHYRPMFASYG 480 GS+EVGK ADLVLW PAFFGVKP ++L GG IAA+ MGD NASIPTPQPVHYRPMF +YG Sbjct: 424 GSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGAYG 483 Query: 481 SSLHATSLTFISQAAFDAGVPESLGLKKQIGVVKGCR-TVQKKDLIHNDYLPDIEVDPQT 539 S +S+TF+SQA+ DAG+ LG+ K++ V+ R + K +IHN P IEVDP+T Sbjct: 484 RSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDPET 543 Query: 540 YQVKADGVLLWCEPADVLPMAQRYFLF 566 Y+V+ADG LL CEPA VLPMAQRYFLF Sbjct: 544 YEVRADGELLTCEPATVLPMAQRYFLF 570
>PF06580#Sensor histidine kinase Length = 349 Score = 31.4 bits (71), Expect = 0.006 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 29/112 (25%) Query: 270 MLQNLIGNALQHGAASHE----ITVSVTGAEKAVILVVHNEGKPIAEDAIGTIFDPLVRS 325 ++Q L+ N ++HG A I + T V L V N G + Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK------------- 305 Query: 326 TEENSETRSTSTSLGLGLFIVKEVVNAHGG---SITVTSTIGEGTTFNVVLP 374 +T S G GL V+E + G I ++ G+ V++P Sbjct: 306 --------NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM-VLIP 348
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 50.5 bits (121), Expect = 4e-09 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 43/221 (19%) Query: 11 GIDFGTSNSTVGWQRPGVESLIALEDDKITL--PSVVFFNMEERRPVYGRLALHEYLEGY 68 ID GT+N+ LI ++ I L PSVV + A+ G+ Sbjct: 14 SIDLGTANT-----------LIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAV-----GH 57 Query: 69 EGRLM--RSLKSLLGSKLIKHDTSVLGTAMPFKDLLALFIGELKKRAEHTAGREFEQVVL 126 + + M R+ ++ + +K V+ + +L FI ++ + R +V++ Sbjct: 58 DAKQMLGRTPGNIAAIRPMKD--GVIADFFVTEKMLQHFIKQVHSNS---FMRPSPRVLV 112 Query: 127 GRPVHFVDDDAQADQEAEDTLAEVARKIGFKDVSFQFEPIAAAFDYESTIKDEELVLIVD 186 PV + +A +E+ A+ G ++V EP+AAA + + ++VD Sbjct: 113 CVPVGATQVERRAIRES-------AQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVD 165 Query: 187 IGGGTSDFSLVRLSPERRQHDDRQQDILATGGVHIGGTDFD 227 IGGGT++ +++ L+ ++ + V IGG FD Sbjct: 166 IGGGTTEVAVISLN-----------GVVYSSSVRIGGDRFD 195
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 25.4 bits (55), Expect = 0.022 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 5/42 (11%) Query: 2 KITKEQLEKIWTDILEL-----DSIDPDKSVFDLGMDSIKAL 38 K E I I EL + I + + D G+DS++ + Sbjct: 226 KKNVFTCENIRKQIAELLQETPEDITDQEDLLDRGLDSVRIM 267
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.0 bits (83), Expect = 2e-04 Identities = 38/212 (17%), Positives = 82/212 (38%), Gaps = 10/212 (4%) Query: 30 AFILPVMSTFLVDHLNAPPVYIAIYSVGFAVSGLIFSQWFGQLADKGRSKKQLFLLSLSS 89 +L V + + N PP + F ++ I + +G+L+D+ K+ L + + Sbjct: 30 EMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIIN 89 Query: 90 IFLSAVAFYNTSQIWQALVIGLVLMGAGHASIPQLLAMIRVHAVASGKDSARLNSQMRSA 149 F S + F S + L++ + GAG A+ P L+ ++ + + S Sbjct: 90 CFGSVIGFVGHSF-FSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAF-GLIGSI 147 Query: 150 VSIVWIVGPPSAFILIDKFGFKFNFVLSAIIILFVFAFSLAKLPAFKVLPPVASSLQEKP 209 V++ VGP ++ + + ++ I I+ V K+L Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPF-------LMKLLKKEVRIKGHFD 200 Query: 210 MITGRVCLLGAAIFFSNAANSIYITAMPLYLI 241 + G + + +FF S I+ + + ++ Sbjct: 201 IK-GIILMSVGIVFFMLFTTSYSISFLIVSVL 231
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.9 bits (70), Expect = 0.009 Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 9/146 (6%) Query: 223 LLVTMLDTLGSAAHNVGFPV-LSEYISPDVAKTVMGYLLAVWACGKFVGARVASRLLRNR 281 L LD +G P L + + + G LLA++A +F A V L Sbjct: 11 LSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRF 70 Query: 282 GNQGMELLFLAGVALMSSAFILTFQQTELWIALLVVIWAGLGDGVAEVALISRAQREPDS 341 G + + L+ LAG A+ I+ LW+ + I AG+ VA A Sbjct: 71 GRRPVLLVSLAGAAV--DYAIMATAPF-LWVLYIGRIVAGITGATGAVAGAYIADITDGD 127 Query: 342 LRLPLFSLLTLIQMAGFGVGMLLVGP 367 R F ++ A FG GM+ GP Sbjct: 128 ERARHFGFMS----ACFGFGMVA-GP 148
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 7e-04 Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 5 EQSVEIKVLARQGHGIKFIARELGISRNTVRKYLRK 40 E + + L A LG++RNT+RK +R+ Sbjct: 437 EYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>PF05860#haemagglutination activity domain. Length = 117 Score = 73.7 bits (181), Expect = 2e-17 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 23/125 (18%) Query: 57 TNTSVGQAGNGVPVINIAAPNAAGLSHNQYQQYNVDSKGVILNNATNAIQATQLGGNILG 116 N+++ +I + L H+ +Q+++V + G N IQ Sbjct: 11 INSNI-TTEGNTRIIERGTQAGSNLFHS-FQEFSVPTSGTAFFNNPTNIQ---------- 58 Query: 117 NNQLGGRAASTILNEVTGANASQLNGYTEVAGQAARVIIANPYGVTCSGCGFINTPRVTL 176 I++ VTG + S ++G A + + NP G+ ++ + Sbjct: 59 ----------NIISRVTGGSVSNIDGLIRANATA-NLFLINPNGIIFGQNARLDIGGSFV 107 Query: 177 STGKP 181 + Sbjct: 108 GSTAN 112
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 76.8 bits (189), Expect = 3e-17 Identities = 79/358 (22%), Positives = 140/358 (39%), Gaps = 33/358 (9%) Query: 29 LGMFMVLPVLATYGMDL--AGASPALIGLAIGAYGLTQAVLQIPFGIISDRIGRRPVIYL 86 +G+ +++PVL DL + A G+ + Y L Q G +SDR GRRPV+ + Sbjct: 19 VGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLV 78 Query: 87 GLIIFAIGSVVAANADSIWGIIAGRILQG-AGAISAAVMALLSDLTREQHRTKAMAMIGM 145 L A+ + A A +W + GRI+ G GA A A ++D+T R + + Sbjct: 79 SLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSA 138 Query: 146 TIGLSFAIAMVVGPVITGMFGLSGL---FLATGGMALLGLLIVAFVVPKANGPLMHRESG 202 G MV GPV+ G+ G F A + L L F++P+++ Sbjct: 139 CFG----FGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKG---ERRP 191 Query: 203 VARQALGATLRHPDLLRLDLGIFVLHAMLMSSFVA-----LPLALVEKAGLPKEEHW--- 254 + R+AL R G+ V+ A++ F+ +P AL G + HW Sbjct: 192 LRREALNPL----ASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR-FHWDAT 246 Query: 255 ----WVYLTALLVSFFAMIPFIIYGEKKRQMKRVLLGAVTVLMLAELFFWAYGDTLRALV 310 + +L S + + + + ++LG + + A Sbjct: 247 TIGISLAAFGILHSLAQAMITGPVAARLGERRALMLG-MIADGTGYILLAFATRGWMAFP 305 Query: 311 IGTVVFFTAFNLLEASLPSLISKVSPAGGKGTAMGVYSTSQFLGSAAGGILGGWLFQH 368 I +V + + +L +++S+ +G G + L S G +L ++ Sbjct: 306 I--MVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 38.3 bits (89), Expect = 3e-06 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 9/101 (8%) Query: 37 FSKLYERINHEMEEEAQHADALMRRILMLEGTP---------RMRPDDLDVGTTVPEMLA 87 F L+E+ + A+ D + R+L + G P D T+ EM+ Sbjct: 43 FFTLHEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQ 102 Query: 88 SDLRLEYKVRAALCKGIELCELHGDYVTREILRVQLADTEE 128 + + ++ + I L E + D T ++ + + E+ Sbjct: 103 ALVNDYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEK 143
>PF06580#Sensor histidine kinase Length = 349 Score = 36.0 bits (83), Expect = 3e-04 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 25/103 (24%) Query: 363 LLSNAIRHGLS----GSVITITLATHADEVSLAVRNAGEGIDAEHLPRLFDRFYRVHVSR 418 L+ N I+HG++ G I + V+L V N G Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306 Query: 419 ARQQGGTGLGLAIVRSIMSL---HEGQVTVESEPGHFTTFSLI 458 + TG GL VR + + E Q+ + + G LI Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.7 bits (207), Expect = 7e-21 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 2 RILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGWE 61 ILV +D+ ++Q L+ +GY V I + D+V+ DV +P+ + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLSRLRKT-VSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSE 119 +L R++K V++++A+ +K E GA DYL KPF+ EL+ + + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.4 bits (97), Expect = 5e-06 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 13/115 (11%) Query: 105 VTFPGEIRFDEDRTAHVVPRVSGVVESVKVDLGQAVKKGQVLAVIASQQISDQRSELNAA 164 T G++ + P + +V+ + V G++V+KG VL + + ++ Sbjct: 84 ATANGKLTHSGRSKE-IKPIENSIVKEIIVKEGESVRKGDVLLKLTALG---AEADTLKT 139 Query: 165 QRRQELARLTLQR---------EKKLWEDKISAEQDYLQARQEFQEADINLANAR 210 Q ARL R KL E K+ E + +E +L + Sbjct: 140 QSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQ 194 Score = 39.8 bits (93), Expect = 1e-05 Identities = 38/214 (17%), Positives = 75/214 (35%), Gaps = 22/214 (10%) Query: 149 IASQQISDQRSELNAAQRRQELARLTLQREKKLWEDKISAEQDYLQARQEFQ-EADINLA 207 IA + +Q ++ A EL Q E+ + + +SA+++Y Q F+ E L Sbjct: 249 IAKHAVLEQENKYVEAV--NELRVYKSQLEQ-IESEILSAKEEYQLVTQLFKNEILDKLR 305 Query: 208 NARQKISAIGASLNPS--AGNRYELIAPFDAMVVE-KHLGIGEMVSEASNAFTLS-DLSR 263 I + L + + AP V + K G +V+ A + + Sbjct: 306 QTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDT 365 Query: 264 VWATFGVAPKDLDKVVVGRPVIVSAPDLN----ARVEGKIGYVG--SLLGEQT------- 310 + T V KD+ + VG+ I+ + GK+ + ++ ++ Sbjct: 366 LEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVI 425 Query: 311 RAAAVRVPLANPQGAW-RPGLFVSVEVAAEQTSV 343 + + G+ V+ E+ SV Sbjct: 426 ISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSV 459
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 794 bits (2052), Expect = 0.0 Identities = 232/1063 (21%), Positives = 442/1063 (41%), Gaps = 58/1063 (5%) Query: 5 LIQFAIEQRIVVMLAVLLMAGLGIASYQKLPIDAVPDITNVQVQINTSAPGFSPLETEQR 64 + F I + I + +++ G + +LP+ P I V ++ + PG + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 ITFAIETNMAGLPGLQQTRSLSRS-GLSQVTVIFEDGTDLFFARQLVGERLQIAKDQLPE 123 +T IE NM G+ L S S S G +T+ F+ GTD A+ V +LQ+A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GVDAMMGPISTGLGEIFLWTVEAREGALKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAE 183 V + +L D T D+ +K L + GV + Sbjct: 121 EVQQQGISVEKSSS-SYLMVA-----GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGD 174 Query: 184 INTIGGFARQYQIAPDPKKLAAYKLTLNDLVAALERNNANVGAGYIERGGE------QLL 237 + G +I D L YKLT D++ L+ N + AG + Sbjct: 175 VQLFGA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNAS 233 Query: 238 IRAPGQLGTVDDIANIVI-ANVQGTPIRISSVAEVGIGKEMRSGAATENGREVVLGTVFM 296 I A + ++ + + N G+ +R+ VA V +G E + A NG+ + + Sbjct: 234 IIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKL 293 Query: 297 LIGENSRTVSQAVAAKLADINRTLPEGVEAVTVYDRTNLVEKAIATVKKNLIEGAILVIV 356 G N+ ++A+ AKLA++ P+G++ + YD T V+ +I V K L E +LV + Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 357 ILFLFLGNIRAALITAMVIPLAMLFTFTGMFTNKVSANLMSLG--ALDFGIIVDGAVVIV 414 +++LFL N+RA LI + +P+ +L TF + S N +++ L G++VD A+V+V Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 415 ENAIRRLAHAQKKYGRMLTRSERFQEVFAAAREARRPLIFGQLIIMVVYLPIFALTGVEG 474 EN R + + + + + + L+ +++ V++P+ G G Sbjct: 414 ENVERVMMEDK---------LPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 475 KMFHPMAFTVVIALLGAMILSVTFVPAAIAMFVTGKVKEEE----GFVMRTAR------H 524 ++ + T+V A+ ++++++ PA A + E GF + Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVN 524 Query: 525 RYAPILSWVLGHRSIAFGLALVLIVLSGFTASRMGSEFIPSLSEGDFALQALRVPGTSL- 583 Y + +LG + +++ R+ S F+P +G F G + Sbjct: 525 HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQE 584 Query: 584 -TQSVDMQQRLEKAIIEKVPEVQRVFARTGTAEIAADPMPPNISDSYVMLKPQSEWPDPD 642 TQ V + Q + + + V+ VF G + N ++V LKP E + Sbjct: 585 RTQKV-LDQVTDYYLKNEKANVESVFTVNG---FSFSGQAQNAGMAFVSLKPWEERNGDE 640 Query: 643 KSREALIADMQKAAASVPGSNYELSQPIQLRFNELVSGVRSDVA-VKVFGDDMNVLNQTA 701 S EA+I + + EL + D + G + L Q Sbjct: 641 NSAEAVIHRAKMELGKIRDGFVIPFNM--PAIVELGTATGFDFELIDQAGLGHDALTQAR 698 Query: 702 AKIAATLQKVSGA-SEVKVEQTTGLPVLTIKIDRDKAARYGLNVADVQDAIAIALGGRQA 760 ++ + + V+ +++D++KA G++++D+ I+ ALGG Sbjct: 699 NQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYV 758 Query: 761 GTLYEGDRRFDMVVRLSEQLRTDVNGLSSLLIPVPASANSNQQISFISLSQVASLDLVLG 820 + R + V+ + R + L + ++N + + S + V G Sbjct: 759 NDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVR-----SANGE--MVPFSAFTTSHWVYG 811 Query: 821 PNQISRENGKRVVIVSANVRGRDLGSFVEEAGTTIDS-GVQIPAGYWTNWGGQFEQLQSA 879 ++ R NG + + G+ +A +++ ++PAG +W G Q + + Sbjct: 812 SPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLS 868 Query: 880 AKRLQIVVPVALLLVLALLFMMFNNLKDGLLVFTGIPFALTGGVMALWLRDIPLSISAGV 939 + +V ++ ++V L ++ + + V +P + G ++A L + + V Sbjct: 869 GNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMV 928 Query: 940 GFIALSGVAVLNGLVMIAFIRSLRE-EGHSLHNAINEGALTRLRPVLMTALVASLGFIPM 998 G + G++ N ++++ F + L E EG + A RLRP+LMT+L LG +P+ Sbjct: 929 GLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPL 988 Query: 999 ALATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYQWAHRR 1041 A++ G G+ Q + V+GG++S+T L + +P + R Sbjct: 989 AISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 33.6 bits (76), Expect = 0.007 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 5/75 (6%) Query: 14 TGAMAGFVLGAIVGIAAVAYVSLTVATCGFGGFLLAMAVGLAGNAIASIGESIGSAFSSP 73 T MAG ++GAIV A+ V + VA G G A L +GE+I + Sbjct: 402 TAEMAGSIVGAIVAAIAMVAVIVVVAVVGKGA-----AAKLGNALSKMMGETIKKLVPNV 456 Query: 74 AGQIESASPNVFING 88 Q+ +F G Sbjct: 457 LKQLAQNGSKLFTQG 471
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 98.0 bits (244), Expect = 9e-26 Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 1 MAGRSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGT 60 M G +IL+ DD+A IR ++ AL AGYD N+ I DL++ D ++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 + +L R+K + D+P+++++A+ I+ E GA DY+ KPF EL+ + Sbjct: 61 NAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 121 LRR 123 L Sbjct: 119 LAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 33.3 bits (76), Expect = 0.002 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 25/99 (25%) Query: 329 LIFNAVKY----TPAEGVIRIRWWADERGAHLSVQDSGIGIETKHLPRLTERFYRVDTSR 384 L+ N +K+ P G I ++ D L V+++G + K+ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-SLALKNTKE------------ 309 Query: 385 ASNTGGTGLGLAIVKHVLLRHRGN---LEINSVPGKGSV 420 TG GL V+ L G ++++ GK + Sbjct: 310 -----STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.5 bits (222), Expect = 3e-22 Identities = 32/168 (19%), Positives = 69/168 (41%), Gaps = 6/168 (3%) Query: 1 MSKVSVLVVDDATFIRDLVKKGLRNYFPGIHTEDAVNGRKAQALLGKESFDLILCDWEMP 60 M+ ++LV DD IR ++ + L G N + DL++ D MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALS--RAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 EMSGLELLTWCREQDNYLRTVPFIMVTSRGDKENVVQAIQAGVTDFVGKPFTNEQLLTKV 120 + + +LL ++ L P ++++++ ++A + G D++ KPF +L+ + Sbjct: 59 DENAFDLLPRIKKARPDL---PVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 121 KKALAKVGKLDAVMSTAPARMNSPLNDSLSALTGGKAEVVRATPAAAP 168 +ALA+ + + + + S +A+ + R Sbjct: 116 GRALAEPKRRPSKLEDDSQDGMPLVGRS-AAMQEIYRVLARLMQTDLT 162
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.014 Identities = 10/93 (10%), Positives = 27/93 (29%), Gaps = 15/93 (16%) Query: 141 EAAWPILQERIKRVEKLADELYILEKKDIGAINHGIERLRLQARKLELNGRLDAAAQADM 200 E + + R+ L + I + L + + +E L Sbjct: 227 ENLSRVEKSRLDDFSSLLHKQAIAK----------HAVLEQENKYVEAVNELRV-----Y 271 Query: 201 AAERAELEARYKVIEGRLDGLHEAFDRDSLTAR 233 ++ ++E+ + + + F + L Sbjct: 272 KSQLEQIESEILSAKEEYQLVTQLFKNEILDKL 304