>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 33.2 bits (75), Expect = 0.002 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 15/112 (13%) Query: 135 AGLVHRDVKPGNILIT-PTGQVKLTDFGIAKAVDAAPVTQTGMVMGTAQYIAPEQALGH- 192 AG+VH D+KPGN++ +G+ + D G+ P G T + APE +G+ Sbjct: 264 AGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQP---KGF---TESFKAPELGVGNL 317 Query: 193 DATAASDVYAL------GVVGYEAVSGKRPFTGEGALTVAMKHI-KENPPPL 237 A+ SDV+ + + G+E +P G +T H+ EN P+ Sbjct: 318 GASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRFITSEPAHVMDENGYPI 369
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 40.7 bits (95), Expect = 6e-06 Identities = 21/79 (26%), Positives = 21/79 (26%), Gaps = 4/79 (5%) Query: 422 APPAPATTPAPRPAPTSAPRSPAPSGAPTPAPPRTVTSSPAPSSPAPSPAPSGTAAPAPS 481 PP P P P P P P AP P P P P P P S Sbjct: 68 PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK----PKPKPKPVKKVEQPKRDVKPVES 123 Query: 482 GPPSPAPTPTPTVTALPPP 500 P SP P Sbjct: 124 RPASPFENTAPARPTSSTA 142 Score = 36.1 bits (83), Expect = 2e-04 Identities = 21/87 (24%), Positives = 25/87 (28%), Gaps = 1/87 (1%) Query: 422 APPAPATTPAPRPAPTSAPRSPAPSGAPTPAPPRTVTSSPAPSSPAPSPAPSGTAAPAPS 481 AP P + PA P++ P P P P P AP P P Sbjct: 45 APAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK 104 Query: 482 GPPS-PAPTPTPTVTALPPPPPEPGTN 507 P P V + P P N Sbjct: 105 PKPVKKVEQPKRDVKPVESRPASPFEN 131 Score = 35.7 bits (82), Expect = 3e-04 Identities = 18/84 (21%), Positives = 19/84 (22%), Gaps = 3/84 (3%) Query: 423 PPAPATTPAPRPAPTSAPRSPAPSGAPTPAPPRTVTSSPAPSSPAPSPAPSGTAAPAPSG 482 P A P P P P P P P + P P P Sbjct: 63 PQAVQPPPEPVVEP---EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVK 119 Query: 483 PPSPAPTPTPTVTALPPPPPEPGT 506 P P TA P T Sbjct: 120 PVESRPASPFENTAPARPTSSTAT 143 Score = 34.6 bits (79), Expect = 5e-04 Identities = 27/116 (23%), Positives = 34/116 (29%), Gaps = 2/116 (1%) Query: 393 VIAGLPSGSLDEAIGQIEELSRSSVLPVCAPPAPATTPAPRPAPTSAPRSPAPSGAPTPA 452 V+AGL S+ + I SV V AP A +P P P P P P Sbjct: 28 VVAGLLYTSVHQVIELPAPAQPISVTMV-APADLEPPQAVQPPPEPVVE-PEPEPEPIPE 85 Query: 453 PPRTVTSSPAPSSPAPSPAPSGTAAPAPSGPPSPAPTPTPTVTALPPPPPEPGTNC 508 PP+ P P P P P P P ++ Sbjct: 86 PPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSST 141 Score = 34.6 bits (79), Expect = 6e-04 Identities = 15/82 (18%), Positives = 20/82 (24%), Gaps = 1/82 (1%) Query: 422 APPAPATTPAPRPAPTSAPRSPAPSGAPTPAPPRTVTSSPAPSSPAPSPAPSGTAAPAPS 481 P P P P P + P P P P V P + + Sbjct: 74 VEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK-PVKKVEQPKRDVKPVESRPASPFENT 132 Query: 482 GPPSPAPTPTPTVTALPPPPPE 503 P P + T+ P Sbjct: 133 APARPTSSTATAATSKPVTSVA 154 Score = 34.6 bits (79), Expect = 6e-04 Identities = 24/124 (19%), Positives = 35/124 (28%), Gaps = 3/124 (2%) Query: 380 LGVDDMRPSERAQVIAGLPSGSLDEAIGQIEELSRSSVLPVCAPPAPATTPAPRPAPTSA 439 + V + P++ A P E + + E P P P P+P P Sbjct: 50 ISVTMVAPADLEPPQAVQPP---PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 106 Query: 440 PRSPAPSGAPTPAPPRTVTSSPAPSSPAPSPAPSGTAAPAPSGPPSPAPTPTPTVTALPP 499 P P + +SP ++ P S A S A P P Sbjct: 107 PVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQ 166 Query: 500 PPPE 503 P Sbjct: 167 YPAR 170
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.1 bits (166), Expect = 2e-16 Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 15/169 (8%) Query: 6 RPVRADAARNRALLLAAAEDEFRERG-ASASVADIARRAGVAKGTVFRHFPTKEDLIASI 64 R + +A R +L A F ++G +S S+ +IA+ AGV +G ++ HF K DL + I Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 65 VCEHVAVLAEAAARLAD------SPDPGAALLEFLTLAADQRQRHDLTFLQSASDGDPRV 118 + + E L+ L + +R L + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 119 TEVRDAL--------HEHLETLVDRARASGAIRADITEADVFLMMCAPI 159 V ++ +E + + + AD+ ++M I Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 66.6 bits (162), Expect = 3e-15 Identities = 52/231 (22%), Positives = 88/231 (38%), Gaps = 27/231 (11%) Query: 3 LRGATVLVTGTNRGIGQHFAVQLLQRGAKVYATARRPELVDIPG---------AEVLRLD 53 + G +TG +GIG+ A L +GA + A PE ++ AE D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 54 ITDQSSVDAV----AAVAGDVDVLINNAADTAGGNLVTGDLDAIRSTMDSNYYGTLAMIR 109 + D +++D + G +D+L+N A G + + + +T N G R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 110 AFAPILARNGGGAILNVLSAAAWTTVDGNTAYAAAKSAQWGLTNGVRLELAAQGTQVAAL 169 + + + G+I+ V S A AYA++K+A T + LELA + + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 170 VPGLIGT--------------QTLLDFAERHGIDLPDDAVMDPADLVRLAL 206 PG T Q + E +P + P+D+ L Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 32.3 bits (73), Expect = 0.003 Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 10/130 (7%) Query: 45 PPMPAAPPRTQTAAQAPQSWQTEVMSQVTNAPAHQPMHQRLPNNGMMRTPQSAPSVGARH 104 +PA AP + Q P +P + P P+ Sbjct: 41 IELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEP------IPEPPKEAPVVI 94 Query: 105 EQPRPAPAPAPRPVPPPPPSQYYGENTDQRQAAPPTSAATMGNHRAIDALSHVGVRSAVK 164 E+P+P P P P+PV + + + R A+P + A + + S Sbjct: 95 EKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAP----ARPTSSTATAATSKPV 150 Query: 165 MPPQRGWRHW 174 G R Sbjct: 151 TSVASGPRAL 160
>PERTACTIN#Pertactin signature. Length = 922 Score = 30.5 bits (68), Expect = 0.027 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Query: 266 RIFGGGAGGAGGLPG-PPPGNAGPGPEGPAMFGSAGI 301 I G A G +PG PG A PG GP + G G+ Sbjct: 257 TIRRGDAPAGGAVPGGAVPGGAVPGGFGPLLDGWYGV 293
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 75.5 bits (185), Expect = 2e-18 Identities = 69/255 (27%), Positives = 106/255 (41%), Gaps = 27/255 (10%) Query: 6 RVALITGASQGIGAGLEAGYRKLGYAVVA---NSRTIDGGDDPMVL------AVPGDVAQ 56 ++A ITGA+QGIG + G + A N ++ + A P DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 57 PGVGGRIVDAAVQRFGRIDTVVNNAGLFIARPFTDYTDEEYDAITGVNLRGFFEISRAAV 116 I + G ID +VN AG+ +DEE++A VN G F SR+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 117 ARMLDQGGGGHLVTISTTLVEHANSAVPSALASLTKGGLNAATRALAVEYATQGIRSNAV 176 M+D+ G +VT+ + +++ + +S K T+ L +E A IR N V Sbjct: 129 KYMMDRRSGS-IVTVGSNPAGVPRTSMAAYASS--KAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 177 ALGIIRTPMHQP---SDYDALATLH----------PVGHVGEVSDVVDAVLYL--ENAPF 221 + G T M + A + P+ + + SD+ DAVL+L A Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 222 VTGEILHVDGGQSAG 236 +T L VDGG + G Sbjct: 246 ITMHNLCVDGGATLG 260
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 39.9 bits (93), Expect = 3e-05 Identities = 42/133 (31%), Positives = 52/133 (39%), Gaps = 9/133 (6%) Query: 377 FGGQDLDDNADGGNG------GQGGEGGAGGVGPEGGAGGSGGDGGIGGGGGENGTGGDG 430 F G D DD +G +G +G + +GG G + GG G D IG G GGDG Sbjct: 740 FHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDG 799 Query: 431 GTG-GPGGLGGSGSLDEGGDGGDGGDGGTGGDSLEGGTGGSGGFGGGGGSGGFGGSGDGG 489 G + ++ GG G D G G D L+GG G GG G SG G Sbjct: 800 DDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGH 859 Query: 490 DPGTAGSAGSGND 502 G D Sbjct: 860 H--IIDDDGGKED 870 Score = 38.8 bits (90), Expect = 6e-05 Identities = 34/113 (30%), Positives = 43/113 (38%), Gaps = 4/113 (3%) Query: 253 GSGGLFAPGGTDGNGGAGGNGGDGITGDGSVGGNGADGGKGGDGVIGGTGGDGGLGGLGD 312 G+ G G DGN G+ G+ G G + GG G D +IG G + GG GD Sbjct: 742 GADGDDLIEGNDGNDRLYGDKGNDTL-SGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGD 800 Query: 313 EGFGGGEGGSGGTGGSGEIGGVGGTGGAGGSGSAGFDGGLGGSGGDGGEGSTT 365 + F GG G G G+ DGG G GG G+ Sbjct: 801 DEFQVQGNSLAKNVLF---GGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDI 850 Score = 35.7 bits (82), Expect = 4e-04 Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 243 GGDGGDGGTAGSGGLFAPGGTDGNGGAGGNGGDGIT-GDGSVGGNGADGGKGGDGVIGGT 301 GG+G D G G G N GG+G D S+ N GGKG D + G Sbjct: 769 GGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSE 828 Query: 302 GGDGGLGGLGDEGFGGGEG 320 G D GG GD+ GG G Sbjct: 829 GADLLDGGEGDDLLKGGYG 847 Score = 35.3 bits (81), Expect = 7e-04 Identities = 26/79 (32%), Positives = 27/79 (34%), Gaps = 7/79 (8%) Query: 447 GGDGGDGGDGGTGGDSLEGGTGGSGGFGGGGGSGGFGGSGD-------GGDPGTAGSAGS 499 G G D GG G D L GG G G G + GG GD G Sbjct: 760 GDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGK 819 Query: 500 GNDGTQGGGGGAGGTGGAG 518 GND G G GG G Sbjct: 820 GNDKLYGSEGADLLDGGEG 838 Score = 32.2 bits (73), Expect = 0.005 Identities = 40/134 (29%), Positives = 45/134 (33%), Gaps = 8/134 (5%) Query: 297 VIGGTGGDGGLGGLGDEGFGGGEGGSGGTGGSGEIGGVGGTGGAGGSGSAGFDGGLGGSG 356 +IG T D G + F G +G G G G G SG G D GG G Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDG 781 Query: 357 GDGGEGSTTGGAGGKGGLGGFGGQDLDDNADGGNGGQGGEGGAGGVGPEGGAGGSGGDGG 416 D G AG GG G DD GG G + G G D Sbjct: 782 ND----KLIGVAGNNYLNGGDG----DDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLL 833 Query: 417 IGGGGGENGTGGDG 430 GG G + GG G Sbjct: 834 DGGEGDDLLKGGYG 847 Score = 31.9 bits (72), Expect = 0.007 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 4/78 (5%) Query: 447 GGDGGDGGDGGTGGDSLEGGTGGSGGFGGGGGSGGFGGSGD----GGDPGTAGSAGSGND 502 G DG D +G G D L G G GG G +GG G+ G + G G+D Sbjct: 742 GADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDD 801 Query: 503 GTQGGGGGAGGTGGAGGA 520 Q G GG Sbjct: 802 EFQVQGNSLAKNVLFGGK 819 Score = 31.1 bits (70), Expect = 0.014 Identities = 38/133 (28%), Positives = 48/133 (36%), Gaps = 11/133 (8%) Query: 387 DGGNGGQGGEGGAGGVGPEGGAGGSGGDGGIGGGGGENGTGGDGGTGGPGGLGGSGSLDE 446 D +G G + G G + G G D GG G + GGDG G G + Sbjct: 738 DIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAG--NNYLN 795 Query: 447 GGDGGD---GGDGGTGGDSLEGGTGGSGGFGGGGGSGGFGGSGDGGDPGTAGS------A 497 GGDG D + L GG G +G G GG GD G G+ + Sbjct: 796 GGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLS 855 Query: 498 GSGNDGTQGGGGG 510 G G+ GG Sbjct: 856 GYGHHIIDDDGGK 868 Score = 31.1 bits (70), Expect = 0.015 Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 10/125 (8%) Query: 283 VGGNGAD---GGKGGDGVIGGTGGDGGLGGLGDEGFGGGEGGSGGTGGSGEIGGVGGTGG 339 +G AD G K D G G D G G++ G +G +GG+G+ GG G Sbjct: 723 IGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGN 782 Query: 340 AGGSGSAGFDGGLGGSGGDGGEGSTTG-------GAGGKGGLGGFGGQDLDDNADGGNGG 392 G AG + GG G D + G G L G G DL D +G + Sbjct: 783 DKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLL 842 Query: 393 QGGEG 397 +GG G Sbjct: 843 KGGYG 847 Score = 30.3 bits (68), Expect = 0.020 Identities = 35/106 (33%), Positives = 38/106 (35%), Gaps = 9/106 (8%) Query: 134 GNGGKGFAGGNGGAGALYFGNGGDGGAGVAGGNGGRGGAGG--LFFGNGGNGGVGGTGAD 191 G G GN G LY G D +G G + GG G L G N GG G D Sbjct: 742 GADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDD 801 Query: 192 GTEPGQAGQAGG--KGGAG-----GSGGFFFGSGGSGGQGGKGGDG 230 + A GG G GS G GG G KGG G Sbjct: 802 EFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYG 847
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 45.6 bits (108), Expect = 9e-07 Identities = 40/236 (16%), Positives = 85/236 (36%), Gaps = 34/236 (14%) Query: 184 HGTLKTTLITLGVIAVMLLWLYRRLTTVFLVLFTVMIELTASRGVVAVLANAGIIELSTY 243 H +KT + ++ +++ + + + V V +L I+ Y Sbjct: 338 HEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAV---------PVVLLGTFAILAAFGY 388 Query: 244 STNLLTL--LVIAAGT--DYAIFILGRFHEARYAGQDRVTAFTTMYHGTAHI---ILGSG 296 S N LT+ +V+A G D AI ++ R +D++ + I ++G Sbjct: 389 SINTLTMFGMVLAIGLLVDDAIVVVENVE--RVMMEDKLPPKEATEKSMSQIQGALVGIA 446 Query: 297 LTIAGAVLCLSF---TRLPYFQSLGVPAGIGVLVAVVAALTLAPALL------------- 340 + ++ + ++F + ++ + + ++V+ AL L PAL Sbjct: 447 MVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHE 506 Query: 341 IIGRHFGLFEPSRPLRTRGWRRIGTAIVRWPGPILIATIAIALIGLLALPRYTTSY 396 G FG F + + I+ G L+ I ++ R +S+ Sbjct: 507 NKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSF 562 Score = 42.5 bits (100), Expect = 8e-06 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 7/158 (4%) Query: 760 AGIAALCLILLVMMFITRSIIAAFVIVGTVALSLGASFGLSVLIWQDIFGIQLYWIVLAL 819 A+ L+ LVM +++ A + V + L +F + I + ++ +VLA+ Sbjct: 343 TLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAI 402 Query: 820 AVILLLAVGSDYNLLLISRFKEEIGAGLNTGIIRAMAGSGAVVTAAGLVFAATMASFLF- 878 +++ A+ N + R E ++M+ + +V +A F Sbjct: 403 GLLVDDAIVVVEN---VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFF 459 Query: 879 --ADLRILGQIGTTIALGLLFDTLIVRSFMTPAIAALI 914 + I Q TI + L+ TPA+ A + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALIL-TPALCATL 496
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.3 bits (180), Expect = 3e-17 Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 5/140 (3%) Query: 2 LVIEDSEAIREMVVEALGDAGFATSAYPDGEGLEALLDGHRPDAVILDVMIPGRDGFALI 61 LV +D AIR ++ +AL AG+ + L + D V+ DV++P + F L+ Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLL 66 Query: 62 DVVRAWG-DVGIVMLTARDGLPDRLRGLDGGADDYVVKPFEMSELMSRVGAVL----RRR 116 ++ D+ +++++A++ ++ + GA DY+ KPF+++EL+ +G L RR Sbjct: 67 PRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRP 126 Query: 117 GTVTATVEVGDLLVDRTAAI 136 + + G LV R+AA+ Sbjct: 127 SKLEDDSQDGMPLVGRSAAM 146
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 33.6 bits (76), Expect = 0.002 Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 7/49 (14%) Query: 91 PAVVPGPGPGP---PG--PPPPPRPDGRPPRGPD--GGPPGRPPTPPPP 132 PA P P P PG P P P PD P PD G P RP +P P Sbjct: 333 PAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVP 381
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 38.0 bits (88), Expect = 3e-05 Identities = 23/107 (21%), Positives = 28/107 (26%), Gaps = 8/107 (7%) Query: 20 AGLTLAAPAALAQPL-----PAPAPVPAPAPPPANPFVFPNPFAPPAPAAPAGPTADDPF 74 +T+ APA L P P P P P P P P P P Sbjct: 50 ISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK 109 Query: 75 AVVPGQPMAIPEGTPAGQNPTPFVGQPPFVPPSFNPTNGSIAGAAKP 121 V + P + PF P P S T + Sbjct: 110 KVEQPKRDVKPVESRPAS---PFENTAPARPTSSTATAATSKPVTSV 153
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.7 bits (64), Expect = 0.035 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 8/77 (10%) Query: 48 TGGTGSLVA-VGVMLAVSIIV---IAISVFSQGRRRQVRSGQHDYRRERGRDAGRRRWRP 103 + VG++ + + I I F++ + + E A R R RP Sbjct: 918 FNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEK----EGKGVVEATLMAVRMRLRP 973 Query: 104 LLIAAAVLLAWALLLAL 120 +L+ + + L LA+ Sbjct: 974 ILMTSLAFILGVLPLAI 990
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 33.6 bits (77), Expect = 7e-06 Identities = 11/27 (40%), Positives = 14/27 (51%) Query: 7 ITGGCGLVGSATVRRLAELGRTVVVTD 33 +TG G +G +RL E G VV D Sbjct: 5 VTGAAGFIGFHVSKRLLEAGHQVVGID 31
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.1 bits (140), Expect = 8e-13 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 3/117 (2%) Query: 14 RQERGDRTRELLIDETVRCIREEGFSAASARHIIERAGVSWGVIQHHFGDRDGLLTAVIE 73 ++ TR+ ++D +R ++G S+ S I + AGV+ G I HF D+ L + + E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 74 DALDRLVESLETLSDPAQAMSTD---ELVRATWEAFANPKAMAGLEILIATKQLRVG 127 + + E E++ E+ + L +I K VG Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 36.9 bits (85), Expect = 1e-04 Identities = 23/114 (20%), Positives = 29/114 (25%), Gaps = 1/114 (0%) Query: 437 PVVNLPPGVAPGPGPALTPPYPLPVPPNTPGPQPFPLPYQAPPDQTLPPSGRPPASPQPP 496 P P V PA P PP P +P P P P P P+P Sbjct: 44 PAPAQPISVTM-VAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK 102 Query: 497 VQQSPPAPPALPAEAAPTGSVQPQAAELPSAAYDERSGAFLDPHGGISVYAAGG 550 + P P +P + +A S A G Sbjct: 103 PKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASG 156 Score = 30.7 bits (69), Expect = 0.014 Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Query: 427 PPEADYDPGPPVVNLPPGVAPGPGPALTPPYPLPVPPNTPGPQPFPLPYQAPPDQTLPPS 486 PP+A P PVV P P P P P + P P P+P P+ P + + P Sbjct: 62 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPV 121 Query: 487 GRPPASPQPPVQQSPPAPPALPAEAAPTGSV 517 PASP P P + A AA + V Sbjct: 122 ESRPASPFENTA--PARPTSSTATAATSKPV 150 Score = 28.8 bits (64), Expect = 0.045 Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 4/107 (3%) Query: 418 LPQNKYPYIPPEADYDPGPP--VVNLPPGVAP--GPGPALTPPYPLPVPPNTPGPQPFPL 473 L + PPE +P P + PP AP P P P+ Sbjct: 60 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVK 119 Query: 474 PYQAPPDQTLPPSGRPPASPQPPVQQSPPAPPALPAEAAPTGSVQPQ 520 P ++ P + + + ++ + QPQ Sbjct: 120 PVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQ 166
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.0 bits (75), Expect = 0.002 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 1/62 (1%) Query: 427 PPPADGGPPSAPAQSSPPPVGFPPPPTELSPPPPGFLPSPTELSPPPPGFPPPPATQAPP 486 PAD PP A Q P PV P P E P PP P E P P P P + Sbjct: 55 VAPADLEPPQAV-QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQ 113 Query: 487 VD 488 Sbjct: 114 PK 115
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 6e-04 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 7/164 (4%) Query: 147 RNVGDLDKSRLTEALGVLTDAMRDATPQLRGTLDGVTA----LSRSINDRDDQIQQLLAR 202 +NV + + RLT + ++ Q LD A + IN ++ + +R Sbjct: 177 QNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSR 236 Query: 203 AKAVSDVLAHRSKQMNQLIVEGNQLFAA---LSQKRRSLGILIGGIDDLARQITGFVADN 259 S +L ++ + ++ + N+ A L + L + I + Sbjct: 237 LDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLF 296 Query: 260 RKEFGPALTKLNLVLDNLETRRAQIDDSLRRLPNFANQLGEVVG 303 + E L + + L A+ ++ + A +V Sbjct: 297 KNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQ 340
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 64.5 bits (157), Expect = 7e-13 Identities = 65/292 (22%), Positives = 105/292 (35%), Gaps = 57/292 (19%) Query: 7 QLLRITTAGSVDDGKSTLIGRLLHDTDSLPLDHLEAVTDEEGVADLA-ALSDGLRAEREQ 65 +++ I VD GK+TL LL+++ E G D +D ER++ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNS---------GAITELGSVDKGTTRTDNTLLERQR 52 Query: 66 GITIDVAYRFFSTENRSYILTDTPGHERYTRNMFTGASNAHVAVLLVDARAGVLRQTNRH 125 GITI F EN + DTPGH + ++ S A+LL+ A+ GV QT Sbjct: 53 GITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRIL 112 Query: 126 ARIAKLLGIKHFVAAVNKID----------------------------------LVDFDE 151 + +GI + +NKID + +F E Sbjct: 113 FHALRKMGIPT-IFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTE 171 Query: 152 GRFREVEVELQR--VAARLGDAEITVIPVAAKLGDNVVHRSDNTPWYQGPA--------L 201 + +E + + + + + + + S P Y G A L Sbjct: 172 SEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLF-PVYHGSAKNNIGIDNL 230 Query: 202 LEYLESVELTAPHAESRSLRLPVQWVSRPSPHQRRRYTGRLAAGTLSVGDSV 253 +E + + ++ H L V + QR Y RL +G L + DSV Sbjct: 231 IEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYI-RLYSGVLHLRDSV 281
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 53.1 bits (127), Expect = 7e-10 Identities = 26/112 (23%), Positives = 35/112 (31%), Gaps = 2/112 (1%) Query: 495 VVLPAPAAPPATSTPTPEPQPSPSPTPTPTPSPEPSPSPSPSPTPDPTPTPTPEPTPEPT 554 + LPAPA P + + TP P P P P P+P Sbjct: 36 IELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 95 Query: 555 PEPSPSPEPSPE--PSPSPAPSAEPAPEPSAEPAPSAEPAAPVTECVPAPDT 604 P+P P P + P P P AP+ ++ T P T Sbjct: 96 PKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVT 147 Score = 52.3 bits (125), Expect = 1e-09 Identities = 33/107 (30%), Positives = 42/107 (39%), Gaps = 3/107 (2%) Query: 490 PAAPPVVLPAPAAPPATSTPTPEPQPSPSPTPTPTPSPEPSPSPSPSPTPDPTPTPTPEP 549 P + +V PA PP P PEP P P P P P P +P P P P P+P Sbjct: 44 PISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPK---EAPVVIEKPKPKPKPKP 100 Query: 550 TPEPTPEPSPSPEPSPEPSPSPAPSAEPAPEPSAEPAPSAEPAAPVT 596 P + P + P S +P AP +A + PVT Sbjct: 101 KPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVT 147 Score = 46.5 bits (110), Expect = 9e-08 Identities = 28/111 (25%), Positives = 35/111 (31%), Gaps = 1/111 (0%) Query: 484 PQQVSPPAAPPVVLPAPAAPPATSTPTPEPQPSPSPTPTPTPSPEPSPSPSPSPTPDPTP 543 P Q P PVV P P P P P P P P P P+P P D P Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKP 116 Query: 544 TPTPEPTPEPTPEPSPSPEPSPEPSPS-PAPSAEPAPEPSAEPAPSAEPAA 593 + +P P+ + + S P S P + P A Sbjct: 117 VESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARA 167 Score = 40.7 bits (95), Expect = 7e-06 Identities = 25/121 (20%), Positives = 35/121 (28%), Gaps = 2/121 (1%) Query: 468 VQAVPAPQQVVTKQSAPQQVSPPAAPPVVLPAPAAPPATSTPTPEPQPSPSPTPTPTPSP 527 V +PAP Q ++ P P P P P +P P P Sbjct: 35 VIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 94 Query: 528 EPSPSPSPSPTPDPTPTPTPEPTPEPTPEPSPSPEPS--PEPSPSPAPSAEPAPEPSAEP 585 +P P P P P +P P + P+ + + A S S Sbjct: 95 KPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPR 154 Query: 586 A 586 A Sbjct: 155 A 155
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.5 bits (154), Expect = 1e-14 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 5/146 (3%) Query: 1 MPRTSERGGPLTRRKISDVATTLFLDRGFDAVTVADVAREAGVSSVTVFKHFPRKEDLLF 60 M R +++ TR+ I DVA LF +G + ++ ++A+ AGV+ ++ HF K DL Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 DREEDAVEILRSAVRDRAS--GAGVLASLREVAFRLVDDRHALSGVKAGSIPFFRT---V 115 + E + + + + L+ LRE+ +++ + F V Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 116 AASPALIARAREIASELERALADLLE 141 + R + E + L+ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLK 146
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 54.5 bits (131), Expect = 1e-09 Identities = 53/274 (19%), Positives = 104/274 (37%), Gaps = 19/274 (6%) Query: 63 LVVTRSDGAQLSPADLNA--VDSARGRMLAAADTGPAAASAPPPQVSEDGQAAVATVPLS 120 L V ++ P D++ V SA G M+ + + P++ + Sbjct: 770 LYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEI-QG 828 Query: 121 ADLSGFALTDKVDELRAAATDGLPGDLAAQVTGGPAFGADIANSFSGANFTLLAVTAVVV 180 G + D + + A+ LP + TG N L+A++ VVV Sbjct: 829 EAAPGTSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAP----ALVAISFVVV 883 Query: 181 ALLLIVTYRSPVLWLVPLLVIGFADRVAAVLGVAVAEALGMSPDGSTSGITSVLVFGAGT 240 L L Y S W +P+ V+ ++GV +A L + + + G Sbjct: 884 FLCLAALYES---WSIPVSVM--LVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSA 938 Query: 241 NYALLLISRYREELGR-TESHREA-LDTAVRRAGPAIIASNATVVLALLTLLFAS---SP 295 A+L++ ++ + + + EA L R P I+ ++ +L +L L ++ S Sbjct: 939 KNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRP-ILMTSLAFILGVLPLAISNGAGSG 997 Query: 296 STRSLGVQAAAGLVVAAVFVLLVLPTALGLFGRK 329 + ++G+ G+V A + + +P + R Sbjct: 998 AQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 49.5 bits (118), Expect = 5e-08 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 19/172 (11%) Query: 501 AGHDRAVVIPAILIVVLLVLYLLLRSALAPLVLVGVTVLSALAALGLGGWASVHLFGFPA 560 +G+ ++ +VV L L L S P+ V+ + +G + LF Sbjct: 868 SGNQAPALVAISFVVVFLCLAALYESWSIPVS-----VMLVVPLGIVGVLLAATLFNQKN 922 Query: 561 LDNTAPLFAFLFLVALGVDYTIFLVTRAREETPEHGTTDGIVRAVSATGAVISSAGIVLA 620 + + L + L I +V A++ + G V + + I++ Sbjct: 923 --DVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG---VVEATLMAVRMRLRPILMT 977 Query: 621 AVFCVLGVLPLI--------VLTQVGIIVGLGILLDTFLVRTVIIPALFTLI 664 ++ +LGVLPL VGI V G++ T L +P F +I Sbjct: 978 SLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLA-IFFVPVFFVVI 1028 Score = 47.5 bits (113), Expect = 2e-07 Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 20/162 (12%) Query: 514 IVVLLVLYLLL---RSALAPLVLVGVTVLSALAALGLGGWASVHLFGFPALDNTAPLFAF 570 ++V LV+YL L R+ L P + V V +L A L FG+ NT +F Sbjct: 349 MLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAIL--------AAFGYSI--NTLTMFGM 398 Query: 571 LFLVALGVDYTIFLVTRAREETPEHGTT--DGIVRAVSATGAVISSAGIVLAAVF---CV 625 + + L VD I +V E + +++S + +VL+AVF Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 626 LGVLPLIVLTQVGIIVGLGILLDTFLVRTVIIPALF-TLIGP 666 G + Q I + + L + + PAL TL+ P Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALIL-TPALCATLLKP 499 Score = 34.8 bits (80), Expect = 0.001 Identities = 30/226 (13%), Positives = 76/226 (33%), Gaps = 13/226 (5%) Query: 106 VSEDGQAAVA-TVPLSADLSGFALTDKVDELRAAATDGLPGDLAAQVTGGPAFGADIANS 164 +G+ A + L+ + + A P + + S Sbjct: 279 ARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTT--PFVQLS 336 Query: 165 FSGANFTLLAVTAVVVALLLIVTYRSPVLWLVPLLVIGFADRVAAVLGVAVAEALGMSPD 224 TL ++V L++ + ++ L+P + + V + A+ A G S + Sbjct: 337 IHEVVKTLF-EAIMLVFLVMYLFLQNMRATLIPTIAV----PVVLLGTFAILAAFGYSIN 391 Query: 225 GSTSGITSVLVFGAGTNYALLLISR-YREELGRTESHREALDTAVRRAGPAIIASNATVV 283 T VL G + A++++ R + +EA + ++ + A++ + Sbjct: 392 TLTMF-GMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLS 450 Query: 284 LALLTLLFASSPST---RSLGVQAAAGLVVAAVFVLLVLPTALGLF 326 + + F + R + + + ++ + L++ P Sbjct: 451 AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL 496
>PilS_PF08805#PilS N terminal Length = 185 Score = 28.4 bits (63), Expect = 0.009 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%) Query: 5 DEPADRPAAWPF-LAALAIIVIVVIGIWLL--DVFSGDDLTDEQ 45 + D+ A L + +IV++ + L V S ++EQ Sbjct: 21 KKEQDKGATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQSSNEQ 64
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.2 bits (65), Expect = 0.017 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Query: 29 GRSQRNYPHLVAAALGLDLVDVTYSGATTAHVLSESQRSAPPQIDALDGTETLVTVTIGG 88 G +N P+L GLD V S + + +LS + + A G E L T +G Sbjct: 226 GNKLQNLPNLDNIGAGLDTVSGILSAISASFILSNADADTRTKAAA--GVE-LTTKVLGN 282
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 58.5 bits (141), Expect = 4e-12 Identities = 54/206 (26%), Positives = 85/206 (41%), Gaps = 19/206 (9%) Query: 14 GRVAIVTGANTGIGYEAALVLAGKGAKVVVAVRNLDKGAAAVAALKRVHPGADVTVQELD 73 G++A +TGA GIG A LA +GA + N +K V++LK A+ D Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF--PAD 65 Query: 74 LSSLASVRAAAEDLGAALPRIDLLINNAGVMYPP--KQTTADGFELQFGTNHLGHFALTG 131 + A++ + + ID+L+N AGV+ P + + +E F N G F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 132 LLLHNLLDVPGSRVVTVASLAHRQLADIHFDDLQWERKYNRVAAYGQSKLANLMFTYELQ 191 + ++D +VTV S +AAY SK A +MFT L Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGV-------------PRTSMAAYASSKAAAVMFTKCLG 172 Query: 192 RRLGAAGASTIAVAAHPGISNTELMR 217 L V+ PG + T++ Sbjct: 173 LELAEYNIRCNIVS--PGSTETDMQW 196
>FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein signature. Length = 167 Score = 29.3 bits (65), Expect = 0.021 Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 11/131 (8%) Query: 239 VDGTNLPPRLIDSVKGDQVQTVAAQSADWRGVAL---PAGNPFTADPQARLAMNLGVDRA 295 VD N+ P +D+ +G+ + ++ S ++ +L GN LA N+ Sbjct: 44 VDFGNINPEHVDNSRGEVTKNISI-SCPYKSGSLWIKVTGNTMGVGQNNVLATNITHFGI 102 Query: 296 AMVRDVLVGYGREASTPVAEAYGDAYNPDAQYRFDAARATTLLDEAGWRPGAGGIREKD- 354 A+ + G+ STP+ G D AR+T +R G+G + D Sbjct: 103 ALYQ------GKGMSTPLTLGNGSGNGYRVTAGLDTARSTFTFTSVPFRNGSGILNGGDF 156 Query: 355 GARASFELLYN 365 AS ++YN Sbjct: 157 RTTASMSMIYN 167
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.3 bits (63), Expect = 0.038 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 81 AVAATALGLAIGVSAAMIGGWLDALVMRLVDGVNALPHLVVGIVIAAMWRGAPLAIIASI 140 A+ A + + AA+ W + + LV +P +VG+++AA + + Sbjct: 874 ALVAISFVVVFLCLAALYESWSIPVSVMLV-----VPLGIVGVLLAATLFNQKNDVYFMV 928 Query: 141 AL 142 L Sbjct: 929 GL 930
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.003 Identities = 15/46 (32%), Positives = 20/46 (43%) Query: 13 DIDLYRGRDSAAVHVLDDVNLAVPAGRVTALIGESGCGKSLVASAL 58 D GR +A + + + + GESG GK LVA AL Sbjct: 135 DGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 60.3 bits (146), Expect = 3e-13 Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 27/215 (12%) Query: 15 LSKERIVAAAIEILDADGEKALTFRALTARLATGAGAIYWHVADKDALLAATTDHVIAGA 74 L++E ++ AA+E+L+ G LT R L +L +YWHV +K ALL A ++A Sbjct: 4 LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARH 63 Query: 75 LVDGLSGAEPGDA----IRAIALGLFDAIDAHPWVGA--HLARQPWQLAMVQIFEGVGRA 128 S G++ +R A+ A+ + GA HL +P + + E R Sbjct: 64 HD--YSLPAAGESWQSFLRNNAMSFRRALLRYR-DGAKVHLGTRPDEKQYDTV-ETQLRF 119 Query: 129 LHGLGVPDEALFDAGSALVNYILG-VAGQNAANARLMPPGTDRDAVLGDITRRWLSYDAD 187 + G A SA+ ++ LG V Q A L TDR A + Sbjct: 120 MTENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAAL----TDRPAA-----------PDE 164 Query: 188 RYPFVHRVAPQLREHDDRDQ-FLAGIEIFLAGVAA 221 P + R A Q+ + DD +Q FL G+E + G Sbjct: 165 NLPPLLREALQIMDSDDGEQAFLHGLESLIRGFEV 199
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.9 bits (116), Expect = 3e-09 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 7/145 (4%) Query: 17 RRWHKHKVERRNELVDGTLEAIRRLG-SNVSMDEIAAEIGVSKTVLYRYFVDKNDLTTAV 75 R+ + E R ++D L + G S+ S+ EIA GV++ +Y +F DK+DL + + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 76 M---MRFAQVTLIPNMAAALSSNLDGYDLTREIIRVYVDTVANEPEPYRFVMANNSASKS 132 + A L REI+ +++ E + + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVL---REILIHVLESTVTEERRRLLMEIIFHKCEF 119 Query: 133 KAVADSEQIIARMLAVMFRRRMVEV 157 Q R L + R+ + Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQT 144
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 29.5 bits (66), Expect = 0.028 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 1/84 (1%) Query: 277 AAFGGRAEVMQRLAPLGPVYQAGTLSGNPVAMAAGLATLRAADDAVYATLDANADRL-AG 335 A+ + + ++ L L + + A+A +A + A Y TL +N G Sbjct: 4 ASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGG 63 Query: 336 LITDALTEAGVAHQIPRAGNMFSV 359 I LT+ + ++ V Sbjct: 64 AIVAQLTQMNIPYRFANGSGAIEV 87
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.003 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 16/162 (9%) Query: 17 ETARRIVAALSEAF--SAKVVGQ----EHLRETLLIGLLTGGHILLESVPGLAKTTAARV 70 +R + L + +VG+ + + L + T +++ G K AR Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 71 IAES---IDGQFRRIQC---TPDLLPSDIIGTQIYDATTTSFVTQLGPV---HANVVLLD 121 + + +G F I DL+ S++ G + A T + G + LD Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHE-KGAFTGAQTRSTGRFEQAEGGTLFLD 238 Query: 122 EINRSSAKTQSAMLEAMEERQTTIAGTEYPIPEPFLVIATQN 163 EI Q+ +L +++ + T G PI ++A N Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN 280
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 167 bits (424), Expect = 3e-51 Identities = 92/363 (25%), Positives = 135/363 (37%), Gaps = 66/363 (18%) Query: 1 MRVLLTGAAGFIGTRIRAQLTDAGHDVVAVDAM-------LPAAHGEGATVPD-DVRDLD 52 M+ L+TGAAGFIG + +L +AGH VV +D + L A E P +D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 53 VRDAAAVAD--ALTGVDVVCHQAAVVGAGVNAADSPSYASHNDYGTAVLLAEMFAAGCTR 110 + D + D A + V + + + +YA N G +L Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 111 LVLASSMVVYGQGRFVCPDHGDVEPPPRTREDLDAGMFDHRCPLGGEQVDWALVGEDAPL 170 L+ ASS VYG P + +D DH Sbjct: 121 LLYASSSSVYGLN----------RKMPFSTDD----SVDH-------------------- 146 Query: 171 RPRSLYAASKVAQEHYALAWSESTGGSVVALRYHNVYGPGMPRDTPYSGVAAIFRSSLEK 230 P SLYAA+K A E A +S G LR+ VYGP D F ++ + Sbjct: 147 -PVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALF----KFTKAMLE 201 Query: 231 GDAPKVYEDGGQMRDFVHVDDIAAANVASVEA-----------------GLDGFEAFNVC 273 G + VY G RDF ++DDIA A + + + + +N+ Sbjct: 202 GKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIG 261 Query: 274 SGKPVSILDVATALCETRGDVTPVVTGQYRSGDVRHIVADPARAADVLGFRAAVDPADGL 333 + PV ++D AL + G + GDV AD +V+GF DG+ Sbjct: 262 NSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGV 321 Query: 334 REF 336 + F Sbjct: 322 KNF 324
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 105 bits (264), Expect = 2e-28 Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 6/150 (4%) Query: 2 TRVLIADDDGVVRDVVRRYLERDGLDVSTAHDGTEALRLLGSQHIDVAVLDVMMPGPDGL 61 +L+ADDD +R V+ + L R G DV + R + + D+ V DV+MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 SLCRSLRQRGHSGGYGMPVILLTALGEEDDRIAGLEAGADDYLTKPFSPRELALRVKSVL 121 L +++ +PV++++A I E GA DYL KPF EL + L Sbjct: 64 DLLPRIKKARP----DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 122 RRSPSAVGVQPVDITSGDLTV--STASRAV 149 D G V S A + + Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEI 149
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 7e-12 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 3/106 (2%) Query: 24 ASSLRKDAERNRRRIIEAARELCATRGLEA-TLNEVAHHANLGVGTVYRRFPTKDLLFEA 82 A +++A+ R+ I++ A L + +G+ + +L E+A A + G +Y F K LF Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 83 IFQDGMDQLVEIADAALE--MEDSWEAFASLVWQLCELTATDRGLR 126 I++ + E+ D ++ + E T T+ R Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRR 107
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.047 Identities = 10/20 (50%), Positives = 12/20 (60%) Query: 34 TLLGPSGSGKSTLLRIIAGL 53 L G G GKSTL+ + GL Sbjct: 600 VLEGTGGIGKSTLINTLVGL 619
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 32.5 bits (73), Expect = 0.007 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 33/194 (17%) Query: 48 EIASDGSSNEVLWEDEDGQQHTVRAGTGGPSPAVAVFTKAWVQRNLSQFLDGATASPIVT 107 +I S G+ N + E+ + VR G A F L + ++G TA+ V Sbjct: 140 KITSLGAKNFLTRTAEEIGEQAVREGNINGPEAYMRF--------LDREMEGLTAAYNVK 191 Query: 108 LGEEAIEAKEREKELSRQIEDHRAKAQEADKKRQDHTSRARKLATAAQTAVADQLREFDY 167 L EAI + + + A + Q RK A+ A + Sbjct: 192 LFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIR------ 245 Query: 168 QRFSKNRYSMPVVEGKLRDYNGEFPDESQHAEALKRLGEGAADRVRAIPDPPTGRAVDLE 227 + N Y+MP + + L ++ +GAA +AI D A+ + Sbjct: 246 ---AANTYAMPANGSVV---------ATAAGRGLIQVAQGAASLAQAISD-----AIAV- 287 Query: 228 FVGALLAETPTRVA 241 +G +LA P+ +A Sbjct: 288 -LGRVLASAPSVMA 300
>SECA#SecA protein signature. Length = 901 Score = 33.3 bits (76), Expect = 0.001 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 165 TKLIG-PQVVLVAELRAIGAAVQKLRGRDITVLSDSRL---AVEMVQRWRDG---DDVLP 217 TK+ G + +R + + + ++ LSD L E R G ++++P Sbjct: 7 TKVFGSRNDRTLRRMRKVVNIINAME-PEMEKLSDEELKGKTAEFRARLEKGEVLENLIP 65 Query: 218 EGYAIYRESGK 228 E +A+ RE+ K Sbjct: 66 EAFAVVREASK 76
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 39.5 bits (92), Expect = 7e-07 Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 94 VINYLQEVIGELRKVIWPNRKQMASYTTVVLFFLIFMVAMIGGVDLGLAKLVTWVFG 150 + + +E E+RKVIWP R++ T +V M ++ G+D L +LV+++ G Sbjct: 68 TVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITG 124
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 29.3 bits (65), Expect = 0.048 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 14/103 (13%) Query: 72 SNDTDADDTDADDTDVDADAD---DAGDADGDTAIDTAPETAAGGKDEDTAPDADADQGE 128 SN T A T D D D D+ + +G T +D + + Sbjct: 190 SNSRKKRSTSAGPTVPDRDNDGIPDSLEVEGYT-VDVKNKRTFLSPWISNIHEKKGLTKY 248 Query: 129 VSD-----TAADPGTDIDDSDAAESIQPS---EPSDPSLPAEP 163 S TA+DP +D + I + E P + A P Sbjct: 249 KSSPEKWSTASDPYSDFE--KVTGRIDKNVSPEARHPLVAAYP 289
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 1e-04 Identities = 28/85 (32%), Positives = 35/85 (41%) Query: 662 GGAGSAGASGKAGSGGTVGTPGTSDGKGGAGGAGGKGGDGGSGGAGGSSGGSGSGGSGGS 721 GG G +G + G + T G GG G + GGS G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 722 GGSGGGGGAGGGGGAGGSGGSGGAA 746 G GG G +GGG G GG+ + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 36.2 bits (83), Expect = 5e-04 Identities = 29/85 (34%), Positives = 34/85 (40%) Query: 382 TGGTGGTGGTGATGGKGGVGGAGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGIGG 441 +GG G TGA G + G G GG G + GG+G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 442 KGGTGGTGGTGGTGGTGGTGGAGGT 466 G GG G +GG GTGG A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 35.8 bits (82), Expect = 6e-04 Identities = 30/100 (30%), Positives = 35/100 (35%) Query: 373 TGGAGGAGGTGGTGGTGGTGATGGKGGVGGAGATGGTGGTGGTGGTGGTGGTGGTGGTGG 432 +GG G TG +G GVGG + G + GG+G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 433 TGGAGGIGGKGGTGGTGGTGGTGGTGGTGGAGGTGAGGTG 472 G GG G GG GTGG G G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAG 101 Score = 35.8 bits (82), Expect = 6e-04 Identities = 32/78 (41%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Query: 659 GGKGGAGSAGASGKAGSGGTVGTPGTSDGKGGAGGAGGKGGDGGSGGAGGSSGGSGSGGS 718 G GA S + G G G SDG G + GG GSG GGSG G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGG--GSGSGIHWGGGSGHGNG 65 Query: 719 GGSGGSGGGGGAGGGGGA 736 GG+G SGGG G GG A Sbjct: 66 GGNGNSGGGSGTGGNLSA 83 Score = 35.8 bits (82), Expect = 7e-04 Identities = 29/86 (33%), Positives = 33/86 (38%) Query: 479 LGGVGGTGGTGGTGGTGGTGGAGGTGGTGGAGGQGGTGGTGGTGGTGGTGGAGGLGGDGG 538 + G G G G T G G TG G G G+G + GG G+G G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 539 AGGAGGTGGNGGAGGKGGLGGSTGGA 564 G GG GN G G G S A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 35.5 bits (81), Expect = 7e-04 Identities = 29/84 (34%), Positives = 33/84 (39%) Query: 426 GTGGTGGTGGAGGIGGKGGTGGTGGTGGTGGTGGTGGAGGTGAGGTGFGGQGGLGGVGGT 485 G G G GA G G TG G G + G+G + G G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 486 GGTGGTGGTGGTGGAGGTGGTGGA 509 G GG G +GG G GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 35.1 bits (80), Expect = 0.001 Identities = 29/84 (34%), Positives = 34/84 (40%) Query: 417 GTGGTGGTGGTGGTGGTGGAGGIGGKGGTGGTGGTGGTGGTGGTGGAGGTGAGGTGFGGQ 476 G G G G T G G G G G + G+G + GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 477 GGLGGVGGTGGTGGTGGTGGTGGA 500 G GG G +GG GTGG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 34.3 bits (78), Expect = 0.002 Identities = 27/82 (32%), Positives = 34/82 (41%) Query: 640 AGSAGTEGATGAAGSTGATGGKGGAGSAGASGKAGSGGTVGTPGTSDGKGGAGGAGGKGG 699 +G G TGA ++G G G GSG + G G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 700 DGGSGGAGGSSGGSGSGGSGGS 721 G GG G S GGSG+GG+ + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSA 83 Score = 33.9 bits (77), Expect = 0.003 Identities = 26/80 (32%), Positives = 28/80 (35%) Query: 454 TGGTGGTGGAGGTGAGGTGFGGQGGLGGVGGTGGTGGTGGTGGTGGAGGTGGTGGAGGQG 513 +GG G G G GG GLG GG G G G G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 514 GTGGTGGTGGTGGTGGAGGL 533 G G GG+G G L Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 33.1 bits (75), Expect = 0.005 Identities = 32/104 (30%), Positives = 35/104 (33%) Query: 439 IGGKGGTGGTGGTGGTGGTGGTGGAGGTGAGGTGFGGQGGLGGVGGTGGTGGTGGTGGTG 498 + G G G G T G G G GG G GG+G GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 499 GAGGTGGTGGAGGQGGTGGTGGTGGTGGTGGAGGLGGDGGAGGA 542 G G GG G +GG GTGG G L G G A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.8 bits (74), Expect = 0.006 Identities = 30/75 (40%), Positives = 32/75 (42%), Gaps = 13/75 (17%) Query: 686 DGKGGAGGAGGKGGD--GGSGGAGGSSGGSG-----------SGGSGGSGGSGGGGGAGG 732 DG+G GA G+ GG G G G S GGSG GGG G G Sbjct: 5 DGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 733 GGGAGGSGGSGGAAG 747 GGG G SGG G G Sbjct: 65 GGGNGNSGGGSGTGG 79 Score = 32.8 bits (74), Expect = 0.006 Identities = 29/79 (36%), Positives = 33/79 (41%) Query: 411 GTGGTGGTGGTGGTGGTGGTGGTGGAGGIGGKGGTGGTGGTGGTGGTGGTGGAGGTGAGG 470 G G G G T G G TG G G G+G + GG G+G G G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 471 TGFGGQGGLGGVGGTGGTG 489 GG G GG GTGG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 32.0 bits (72), Expect = 0.009 Identities = 29/102 (28%), Positives = 36/102 (35%) Query: 354 GSGGLFGKGGNAGNAGNGGTGGAGGAGGTGGTGGTGGTGATGGKGGVGGAGATGGTGGTG 413 G G G +GN G G G G + G+G + GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 414 GTGGTGGTGGTGGTGGTGGTGGAGGIGGKGGTGGTGGTGGTG 455 G GG G G G G + A + T G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.2 bits (70), Expect = 0.015 Identities = 25/80 (31%), Positives = 30/80 (37%) Query: 306 GGQGAKGGTGGAGTAGSAGGTGGVGGDAPQVMGGAGSVGGKGGNGGNGGSGGLFGKGGNA 365 GG G TG T+G+ G G G+G GG GSG +G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 366 GNAGNGGTGGAGGAGGTGGT 385 GN G G G G G + Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 30.5 bits (68), Expect = 0.026 Identities = 27/79 (34%), Positives = 29/79 (36%) Query: 408 GTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGIGGKGGTGGTGGTGGTGGTGGTGGAGGTG 467 G G G G T G G TG G G G G + GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 468 AGGTGFGGQGGLGGVGGTG 486 G G G GG G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 29.7 bits (66), Expect = 0.047 Identities = 22/77 (28%), Positives = 29/77 (37%) Query: 345 GKGGNGGNGGSGGLFGKGGNAGNAGNGGTGGAGGAGGTGGTGGTGGTGATGGKGGVGGAG 404 G+G N G + G G G G + G+G + GG G+G G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 405 ATGGTGGTGGTGGTGGT 421 G G G G + Sbjct: 66 GGNGNSGGGSGTGGNLS 82
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 52.0 bits (124), Expect = 2e-09 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 21/180 (11%) Query: 121 DDFYPAEREAATVGDKIVGVPALVDNLAIVYNKKLFADAGIAPPSPDWTWDDFRSAAAKL 180 D YP +A K++ P V+ L+++YNK L P+P TW++ + +L Sbjct: 113 DKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL-------PNPPKTWEEIPALDKEL 165 Query: 181 TNPDTGQYGFLIPADGSEDTVWHYVPMLWEAGGDILSPDNE----RAVFNSEAGVKA-LT 235 F + + P++ GG +N + V AG KA LT Sbjct: 166 KAKGKSALMFNL------QEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLT 219 Query: 236 VLQQMAVTDKSLYLDTTNENGPKLMNSGKIGMLVTGPWDLSQL--SDIDYDVQVMPTFAG 293 L + + +K + DT N G+ M + GPW S + S ++Y V V+PTF G Sbjct: 220 FLVDL-IKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKG 278
>PF05272#Virulence-associated E family protein Length = 892 Score = 36.2 bits (83), Expect = 2e-04 Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 33 LILVGPSGCGKSTALRLLAGLDKPTSGEILIG 64 ++L G G GKST + L GLD + IG Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG 630
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 25.8 bits (56), Expect = 0.032 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 11 AVSSIAVLSGCSQVAEVTNEGGDTTCGDFAGFDEKKQNETITKMLTDEGKNEPANAELTG 70 A ++++VL +E+T +GG T G AG + + T + PA + G Sbjct: 216 APAAVSVLGA----SELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDAPAGGAVPG 271
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 141 bits (358), Expect = 1e-41 Identities = 75/334 (22%), Positives = 138/334 (41%), Gaps = 32/334 (9%) Query: 3 RLLVTGGAGFIGSNFVRYVIENTDYEVVVLDKLT--YAGNL--MSLQNLPERRFRFEHGD 58 + LVTG AGFIG + + ++E +VV +D L Y +L L+ L + F+F D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 59 ITDSALVDDLARNA--DAIVHYAAESHNDNSLSDPRPFLHTNLVGTFTLLEAARKYG-SR 115 + D + DL + + + SL +P + +NL G +LE R Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 116 FHHISTDEVYGDLEFDEPERFTETTPYN-PSSPYSSTKAGSDLLVRAWVRSFGLAATISN 174 + S+ VYG + F+ + P S Y++TK ++L+ + +GL AT Sbjct: 121 LLYASSSSVYGL---NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177 Query: 175 CSNNYGPYQHVEKFIPRQITNVLLGIRPKLYGEGKNIRDWIHADDHSSAVLAILE----- 229 YGP+ + + + +L G +Y GK RD+ + DD + A++ + + Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHA 237 Query: 230 -------------KGKLGETYLIGADGEKENKSVVELVLALMDQPVDAYDHVADRAGHDL 276 Y IG E ++ + + + + + G L Sbjct: 238 DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKK-NMLPLQPGDVL 296 Query: 277 RYAIDSSKLRNELGWSPKYHNFTHGLESTIDWYR 310 + D+ L +G++P+ G+++ ++WYR Sbjct: 297 ETSADTKALYEVIGFTPET-TVKDGVKNFVNWYR 329
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 40.5 bits (95), Expect = 8e-06 Identities = 54/240 (22%), Positives = 86/240 (35%), Gaps = 52/240 (21%) Query: 154 DGQLGQALRETYRFVSHVDFATRSDITLGVTDLCSARRWREYDAVINAAAYTAVDRAETS 213 +L + ++F +D A R +T ++ V + AV + Sbjct: 43 QARLELLAQPGFQFH-KIDLADREGMTDLFAS-------GHFERVFISPHRLAVRYS--L 92 Query: 214 EGRMAAWAANVKGVSDLAKVAAQNGIT-LIHISSDYVFDGTSDRPYREDDPMA-PLGVYG 271 E A +N+ G ++ + N I L++ SS V+ P+ DD + P+ +Y Sbjct: 93 ENPHAYADSNLTGFLNILEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYA 152 Query: 272 QTKAAGDQIV----------TTVPRHYVVRTSWVIG----AGHNFVRTMVSLAERGVDPG 317 TK A + + T R + V W G A F + M+ G Sbjct: 153 ATKKANELMAHTYSHLYGLPATGLRFFTVYGPW--GRPDMALFKFTKAMLE----GKSID 206 Query: 318 VVDDQRGRLTFTV--DIAGAVRHLLD------------------SGAPYGTYNVTGSGPV 357 V + + + FT DIA A+ L D S APY YN+ S PV Sbjct: 207 VYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPV 266
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 181 bits (461), Expect = 3e-53 Identities = 79/338 (23%), Positives = 136/338 (40%), Gaps = 39/338 (11%) Query: 4 RAVLTGGAGFVGSHLAERLLERDIDVVCVDNFVTGTPDNV----AHLQVHDGFRLVKADV 59 + ++TG AGF+G H+++RLLE VV +DN ++ L GF+ K D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 60 SNF-----ISVPGPVDYVLHFASPASPVDYA-ELPIQTMKAGSLGTLHTLGLAKEKGARY 113 ++ + G + V + V Y+ E P + G L+ L + ++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLA-VRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 114 L-LASTSETYGDPLVHPQPETYWGNVN-PVGPRACYDEAKRFAEALTVSYRKAHGVNTAI 171 L AS+S YG P + +V+ PV Y K+ E + +Y +G+ Sbjct: 121 LLYASSSSVYGLN--RKMPFSTDDSVDHPVSL---YAATKKANELMAHTYSHLYGLPATG 175 Query: 172 MRIFNTYGPRMRPNDGRAIPNFITQALAGEPITVHGDGTHTRSVCYVDDLVEGALNLLFS 231 +R F YGP RP+ A+ F L G+ I V+ G R Y+DD+ E + L Sbjct: 176 LRFFTVYGPWGRPD--MALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 232 DLAGP-------------------VNIGNPHELTILELAEFIRELAGSESPVEFIARPQD 272 NIGN + +++ + + + G E+ + Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPG 293 Query: 273 DPSQRQPDITLARAELGWEPQVAPRDGLLKTIAWFRDL 310 D + D +G+ P+ +DG+ + W+RD Sbjct: 294 DVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 32.6 bits (74), Expect = 0.005 Identities = 21/105 (20%), Positives = 30/105 (28%), Gaps = 10/105 (9%) Query: 86 DDEIAASQEASPSPSSRHKKADDVEDLPTEVQSEVDEPEEMAAPEQDASEITVDTEPAAT 145 + A + P + + VE EPE PE V +P Sbjct: 51 SVTMVAPADLEPPQAVQPPPEPVVEP----------EPEPEPIPEPPKEAPVVIEKPKPK 100 Query: 146 PVTTAEPAADVAVTTDAAPKVTQRVLTTAVDTSPAAPPQHPGDAT 190 P +P V V R + +T+PA P A Sbjct: 101 PKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAA 145
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 44.4 bits (105), Expect = 2e-07 Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 31/159 (19%) Query: 2 VITGAGGLVGRVLAGQARKTGREVVAL------------------------TSSEWDITD 37 ++TGA G +G ++ + + G +VV + + D+ D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63 Query: 38 AAAAERYITAD--DVVVNCAAFTQVDAAEAEPDRAHAVNVGGAENVAHACARAGAS-LIH 94 + + V V + P N+ G N+ C L++ Sbjct: 64 REGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLLY 123 Query: 95 LSTDYVFSGIFDGEPRPYDIDD-TTGPLSVYGRTKLAGE 132 S+ V+ P+ DD P+S+Y TK A E Sbjct: 124 ASSSSVYG---LNRKMPFSTDDSVDHPVSLYAATKKANE 159
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.042 Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 376 TARPNEVTYSEDWMRPDYIPPQPPAAAASPQTGDLTPGTLPAEAPLLATPQPQPTDPSA 434 P+ + +E+ R D P PPA A +T + E+ + + T+ +A Sbjct: 1005 ADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTA 1063
>PERTACTIN#Pertactin signature. Length = 922 Score = 34.7 bits (79), Expect = 9e-04 Identities = 20/46 (43%), Positives = 22/46 (47%) Query: 398 PYREPAPAPPPGGPPPGPPANPSPSPPPSPPIGPIDDPLTPPGAGQ 443 P P P P PG PP PP P P PP PP + P P AG+ Sbjct: 571 PKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGR 616
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 35.5 bits (81), Expect = 4e-04 Identities = 39/120 (32%), Positives = 48/120 (40%), Gaps = 11/120 (9%) Query: 343 GPGGKPGCGSLPDVAKNWPVRQLIANTGF----GTGLDWR--PNPGIGFPGYANYLPVTR 396 PG K G + D N PV Q++A G T +D + P P + PG A P + Sbjct: 271 APGTKVNMGPVTDRNGN-PV-QVVATFGRDSQGNTTVDVQVIPRPDLT-PGSAE-APNAQ 326 Query: 397 AVPEPPSIRYPGG-PAPGPIPYPGAPPYGAPQYGPDGTPLYPGVPPAPPQSPPAPPPPDG 455 +PE P PAP P P P PD P G P P SP P P+G Sbjct: 327 PLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPDRPNG 386
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.5 bits (167), Expect = 2e-16 Identities = 41/213 (19%), Positives = 72/213 (33%), Gaps = 26/213 (12%) Query: 10 SRAAQAARTRQRLIDAAVQLFSANNYDDVAVADIAREAKVAHGLLFHYFGSKSQIYLAAI 69 +A TRQ ++D A++LFS ++ +IA+ A V G ++ +F KS ++ Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 70 QFAADEITGSFTVQEGLSPG---QQLREALVRHFRYLAS--HRGLALRLALAGPGAGQSA 124 + + I + PG LRE L+ + R L + + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 125 WEIFESTRLHAVQWIALILDL-------------PPPSPAMQMMWRACIGAIDEAALFWL 171 + ++ R ++ I A +M G I WL Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIM----RGYISGLMENWL 179 Query: 172 RHDEPFAVEDIVDSVVDIMATAMRAAARLDPTL 204 + F ++ V I+ L PTL Sbjct: 180 FAPQSFDLKKEARDYVAILL----EMYLLCPTL 208
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 33.7 bits (77), Expect = 0.003 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 121 STGWAVALEPDGLVVTLGDGDGNVVRVRTGMPLYKQVWYSVVITVD 166 + GW + E +GLV + D +GN V + WY + I+VD Sbjct: 926 NCGWEIYFEDNGLVFEIIDSNGNQESV-YLSNIINDNWYYISISVD 970
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 32.9 bits (75), Expect = 0.002 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 8/152 (5%) Query: 2 LVIALAATLCANVFINGVAFLIP-SLHTERGLDLASAALMSSLP-SLGMVVTLIAWGYVV 59 +I + + G ++P + L A + P ++ +++ G +V Sbjct: 258 FMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILV 317 Query: 60 DRVGERMVLTVGSALTA----AAAFAAASADSLFTVGVFLFLGGMAAASSNTASGRLVVG 115 DR G VL +G + A+F + T+ + LGG++ + T +V Sbjct: 318 DRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF--TKTVISTIVSS 375 Query: 116 WFDAEKRGLVMGIRQTAQPLGVGVGALVIPRL 147 ++ G M + L G G ++ L Sbjct: 376 SLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407 Score = 31.0 bits (70), Expect = 0.009 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 45 SLGMVVTLIAWGYVVDRVGERMVLTVGSALTAAAAFAAASADSLFTVGVFL-FLGGMAAA 103 L + +G + D++G + +L G + + S F++ + F+ G AA Sbjct: 59 MLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAA 118 Query: 104 SSNTASGRLVVGWFDAEKRGLVMGIRQTAQPLGVGVGALVIPRLAEFSSVCAALLFPAI 162 + +V + E RG G+ + +G GVG + +A + LL P I Sbjct: 119 AFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMI 177
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 77.4 bits (191), Expect = 7e-21 Identities = 38/88 (43%), Positives = 52/88 (59%) Query: 2 NKAELIDVLTEKLGSDRRQATAAVENVVDTIVRAVHKGESVTITGFGVFEQRRRAARVAR 61 NK +LI + E ++ + AAV+ V + + KGE V + GFG FE R RAAR R Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPRTGETVKVKPTSVPAFRPGAQFKAVV 89 NP+TGE +K+K + VPAF+ G K V Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 230 bits (588), Expect = 8e-81 Identities = 77/154 (50%), Positives = 106/154 (68%), Gaps = 1/154 (0%) Query: 4 AVCPGSFDPVTRGHVDIFERSAAQFDELVIAVMVNPNKTGMFSLDERIALIEESTTHLPN 63 A+ PGSFDP+T GH+DI ER FD++ +AV+ NPNK MFS+ ER+ I ++ HLPN Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLPN 62 Query: 64 VRVESGRGLIVDFARERGLTAIVKGLRTGTDFEYELQMAQMNKHIA-GVDTFFVATTPQY 122 +V+S GL V++AR+R AI++GLR +DFE ELQMA NK +A ++T F+ T+ +Y Sbjct: 63 AQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTEY 122 Query: 123 SFVSSSLAKEVAMLGGDVSALLPDPVNARLKTKL 156 SF+SSSL KEVA GG+V +P V A L + Sbjct: 123 SFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQF 156
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 0.001 Identities = 23/168 (13%), Positives = 57/168 (33%), Gaps = 11/168 (6%) Query: 39 DDIKDAIPGELDDAQDVLDARDTLLRDAKEHSESTVSTANAEADSMVNHARAEADRLLAD 98 ++I+ +P + +++ + + + S + AE + + ++ + Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATE 1060 Query: 99 AKAQADRMVAEARQH-----SDRMVGEAREEAARIAATAKREYE--ATTGRAKSEADRLI 151 AQ + EA+ + V ++ E T +E +AK E ++ Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQ 1120 Query: 152 ENGNLTYEKAVQEGIKEQQRLVSQTEVVATATAEATRMIDSAHAEADR 199 E + Q K++Q Q + + T I ++ + Sbjct: 1121 EVP----KVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNT 1164
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.0 bits (231), Expect = 8e-24 Identities = 30/120 (25%), Positives = 61/120 (50%) Query: 28 SPIRVLLVDDERALTNLVRMALKYEGWEIDVAHDAAEAVEKYRAQTPDLLVLDIMLPDMD 87 + +L+ DD+ A+ ++ AL G+++ + +AA A DL+V D+++PD + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 88 GLGVLAQLRDSGTYTPTLFLTARDSVADRVTGLTAGGDDYMTKPFSLEELVARLRGLLRR 147 +L +++ + P L ++A+++ + G DY+ KPF L EL+ + L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.8 bits (90), Expect = 2e-06 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 5/86 (5%) Query: 26 ESVQEFWVAELSGELIGCGALHVLWSDLGEVRTVAVHPKVRGRGVGHAIVDRLLAVAADL 85 E + ++ L IG + W+ + +AV R +GVG A++ + + A + Sbjct: 62 EEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKEN 121 Query: 86 HLQRIFVLTFEQ-----EFFARHGFR 106 H + + T + F+A+H F Sbjct: 122 HFCGLMLETQDINISACHFYAKHHFI 147
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.008 Identities = 19/168 (11%), Positives = 52/168 (30%), Gaps = 24/168 (14%) Query: 14 ALFSSKVDEYADPKVQIQQAIEEAQRQHQGLTQQAAQVIGNQRQLEMRLNRQLADIEKLQ 73 +L + + + K Q + +++ + + + A++ + + +L D L Sbjct: 189 SLIKEQFSTWQNQKYQKELNLDKKRAERLTVL---ARINRYENLSRV-EKSRLDDFSSL- 243 Query: 74 VNVRQALTLADQATAAGDAAKATEYTNAAEAFAAQLVTAEQSVEDLKGLHDQALQAAGQA 133 K +A + V A + K +Q A Sbjct: 244 ------------------LHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA 285 Query: 134 KKAVEQNAMMLQQKIA-ERTKLLSQLEQAKMQEQVSASLRSMSELAAP 180 K+ + + + +I + + + ++ + + S + AP Sbjct: 286 KEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAP 333
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 65.2 bits (159), Expect = 1e-14 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 3 RVFLVDDHEVVRRGLIDLLGGDPDIDVVGEAGSVAEALARIPALQPDVAVLDVRLPDGNG 62 + + DD +R L L DV + A I A D+ V DV +PD N Sbjct: 5 TILVADDDAAIRTVLNQALS-RAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 63 IELCRDLLSSLPELRCLMLTSFTSDEAMLDAILAGASGYVVK 104 +L + + P+L L++++ + + A GA Y+ K Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 43.5 bits (102), Expect = 2e-06 Identities = 16/74 (21%), Positives = 18/74 (24%), Gaps = 7/74 (9%) Query: 239 PAAPPTGAPPTPTPPPAPAPGAPPGTPGPATPAGGTAPASPTIGA---PGTAGAGGARRP 295 A + TP P G A A P T G P Sbjct: 459 RAGKASD-SQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPST---GETANP 514 Query: 296 AGTAAGPPGIGGAG 309 TAA + AG Sbjct: 515 FFTAAALTVMATAG 528
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.3 bits (73), Expect = 0.004 Identities = 31/263 (11%), Positives = 65/263 (24%), Gaps = 11/263 (4%) Query: 92 PAQEASPLRLHRRSARRARAGRAERQRGGRSRQDRLDRPTRFRRRRLPAAHPRQRGRPCR 151 + + + E R + T A + +Q + Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 152 RHHRHPRRPRRHRCRRRARPHRAGPPRRHRPPEHLAGLAGARRQQRCRSGRRQRAARAGS 211 ++ + A+ + + A+ + + + Sbjct: 1053 KNEQDATETT-------AQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 212 PARLRRRPVHRERPERAGWTDLPHSRPGHQAPLEQ-EASPHPRHHQQAPQAHPEQEASTH 270 + + V E+ + S Q+ Q +A P + P+ + +T Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTT 1165 Query: 271 PPHSQPGHQAPLEQEASPHPRHHQQAPQAHPEQEASTHPPHSQPGHQAPLEQEASPHPRH 330 QP + E + E +T P +QP E P RH Sbjct: 1166 ADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP--TVNSESSNKPKNRH 1223 Query: 331 HQQ-APQAHPEQEASTHPPHSQP 352 + H + A+T Sbjct: 1224 RRSVRSVPHNVEPATTSSNDRST 1246
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 87.4 bits (216), Expect = 1e-22 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 15/254 (5%) Query: 5 LDGRVALVTGAGAGIGEGIARRFADEGARVVVAEHDADSGSAVADRIGGYF-----VATD 59 ++G++A +TGA GIGE +AR A +GA + +++ + V + D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 60 VSDRGQVDNAVAAAVSEFGAIDILVNNAWGGGGIGRVELKTDQQIADGVAVGYYGPFWAM 119 V D +D A E G IDILVN A G G + +D++ +V G F A Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVA-GVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 120 RAAYPHMKTAGWGRVINLCSLNGVNAHVGSLEYNAAKEALRALTRTAAREWAPTGVTVNA 179 R+ +M G ++ + S Y ++K A T+ E A + N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 180 LCPAAKSQAFFRAL--GDYPELEAMADAAN------PMGRMGDPYDDIAPVAVFLASDAS 231 + P + +L + + + + P+ ++ P DIA +FL S + Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKP-SDIADAVLFLVSGQA 243 Query: 232 RYLTGNTLFVDGGA 245 ++T + L VDGGA Sbjct: 244 GHITMHNLCVDGGA 257
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 57.0 bits (137), Expect = 1e-11 Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 4/190 (2%) Query: 8 GPWAVVAGGSEGVGAEFAALLAQAGVNVALVARKPEPLERTAARCRALGVQTRTLAVDLV 67 G A + G ++G+G A LA G ++A V PE LE+ + +A D+ Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 68 DAP--DEVIAMTADLEVGLLIYNAGANTCSEHFLDA-DLADFARVIDLNITAMMRLTQHY 124 D+ DE+ A + I A + + ++ +N T + ++ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 125 ARPMRERRRGGILLVGSMAGYLGSARHSVYGGVKAFGRIFAESLWLELRQHDVHVLELVL 184 ++ M +RR G I+ VGS + + Y KA +F + L LEL ++++ + Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 185 GVTRTPAMER 194 G T T M+ Sbjct: 188 GSTET-DMQW 196
>cloacin#Cloacin signature. Length = 551 Score = 40.5 bits (94), Expect = 2e-05 Identities = 31/98 (31%), Positives = 40/98 (40%) Query: 431 AGGNGGTGGTGGTGGTGGAGDAGGNGGVGGAGGAGTGGGPTGVGGKGGLGGSGDSGGPGG 490 +GG+G TG +G GVGG G+G GG G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 491 TGGTGGSGGSGGSGGSGAAGGSGGAGGGGGSAGIADPG 528 G GG+G SGG G+G + A G ++ PG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPG 99 Score = 40.1 bits (93), Expect = 2e-05 Identities = 39/120 (32%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 418 GVGGTGGVGGTGEAGGNGGTGGTGGTGGTGGAGDAGGNGGVGGAGGAGTGGGPTGVGGKG 477 G G G G GN GG G G GGA D G G G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI----HWG 57 Query: 478 GLGGSGDSGGPGGTGGTGGSGGSGGSGGSGAAGG-SGGAGGGGGSAGIADPGGTFSHAGA 536 G G G+ GG G +GG G+GG+ + + A G + G G ++ G S A A Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 37.4 bits (86), Expect = 1e-04 Identities = 41/119 (34%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 414 AGNGGVGGTGGVGGTGEAGGNGGTGGTGGTGGTGGAGDAGGNGGVGGAGGAGTGGGPTGV 473 +G G G G T G TG G G + G+G + N G GG+G+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG--GGSGSGIHWGGG 59 Query: 474 GGKGGLGGSGDSGGPGGTGGTGGSGGSGGSGGSGAAGGSGGAG------GGGGSAGIAD 526 G G GG+G+SGG GTGG + + + G A G G G SA IAD Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 37.0 bits (85), Expect = 2e-04 Identities = 35/114 (30%), Positives = 42/114 (36%), Gaps = 2/114 (1%) Query: 443 TGGTGGAGDAGGNGGVGGAGGAGTGGGPTGVGGKGGLGGSGDSGGPGGTGGTGGSGGSGG 502 +GG G + G + G G TG G G G S ++ GG+G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 503 SGGSGAAGGSGG--AGGGGGSAGIADPGGTFSHAGAAGTSGANGASGASGASGA 554 G G G SGG GG SA A F G G + A S A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 35.8 bits (82), Expect = 5e-04 Identities = 33/107 (30%), Positives = 40/107 (37%), Gaps = 1/107 (0%) Query: 394 GQAGNGGNGGKGGFYGGGGNAGNGGVGGTGGVGGTGEAGGNGGTGGTGGTGGTGGAGDAG 453 G+ N G G GG G G + G G + E GG G+G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 454 GNGGVGGAGGAGTGGGPTGVGGKGGLGGSGDSGGPGGTGGTGGSGGS 500 G G G GG+GTGG + V G S G S G+ Sbjct: 66 GGNGNSG-GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 34.3 bits (78), Expect = 0.001 Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 3/113 (2%) Query: 352 NGGNGGAGGIGAAGESGGVGAVGGTGGTGSNATGVGGTGTVGGQAGNGGNGGKGGFYGGG 411 +GG+G GA SG + GG G G G+G GG G G +GGG Sbjct: 2 SGGDGRGHNTGAHSTSGNIN--GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 412 GNAGNGGVGGTGGVGGTGEAGGNGGTGGTGGTGGTGGAGDAGGNGGVGGAGGA 464 GNGG G G GG+G G G + G V + GA Sbjct: 60 SGHGNGGGNGNSG-GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 33.1 bits (75), Expect = 0.003 Identities = 29/101 (28%), Positives = 41/101 (40%) Query: 471 TGVGGKGGLGGSGDSGGPGGTGGTGGSGGSGGSGGSGAAGGSGGAGGGGGSAGIADPGGT 530 +G G+G G+ + G G TG G G S GSG + + GGG GS G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 531 FSHAGAAGTSGANGASGASGASGANGTNGGTGKAGASGSSG 571 + G G SG +G + ++ A G G+ G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 33.1 bits (75), Expect = 0.003 Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 5/74 (6%) Query: 345 TGAASGGNGGNGGAGGIGAAGESGGVGAVGGTGGTGSNATGVGGTGTVGGQAGNGGNGGK 404 TGA S NGG G+G G GA G+G + N GG+G+ G G+G Sbjct: 11 TGAHSTSGNINGGPTGLGVGG-----GASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 405 GGFYGGGGNAGNGG 418 GG GG +G GG Sbjct: 66 GGNGNSGGGSGTGG 79 Score = 32.8 bits (74), Expect = 0.004 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 301 AGGAATTTGTNAVAVGGNGADGGAGGTGVTTGGAGGAGGAATSTT-GAASGGNGGNGGAG 359 +GG T A + GN +GG G GV G + G+G ++ + G SG GG Sbjct: 2 SGGDGRGHNTGAHSTSGN-INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 360 GIGAAGESGGVGAVGGTGGTGS 381 G G G +G G GTGG S Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLS 82 Score = 32.8 bits (74), Expect = 0.004 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Query: 334 AGGAGGAATSTTGAASGG-NGGNGGAGGIGAAGESGGVGAVGGTGGTGSNATGVGGTGTV 392 +GG G + + SG NGG G G G A + G + G GS + G G+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 393 GGQAGNGGNGGKGGFYGGGGNA 414 G G GN G G GG +A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSA 83 Score = 32.8 bits (74), Expect = 0.005 Identities = 36/123 (29%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 134 GYGGIGGSGAAGVAGGN--GGKGGLFFGNGGAGGAGGTSANGGNGGDAGM---FALVGHG 188 G G G + A GN GG GL G G + G+G +S N GG +G + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 189 GNGGVGGNGALGTIGTTGTGTATDGTAGEIGAIGATGANGVNPTASGAAGAAGAAGAATT 248 GNGG GN G+ A A+ GA G+ + S A +A A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Query: 249 VTG 251 + G Sbjct: 123 LKG 125 Score = 31.6 bits (71), Expect = 0.009 Identities = 30/111 (27%), Positives = 37/111 (33%), Gaps = 2/111 (1%) Query: 375 GTGGTGSNATGVGGTGTVGGQAGNGGNGGKGGFYGGGGNAGNGGVGGTGGVGGTGEAGGN 434 G G G N +G + G G G G GG G G + G G G GG+ Sbjct: 3 GGDGRGHNTGAHSTSGNING--GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 435 GGTGGTGGTGGTGGAGDAGGNGGVGGAGGAGTGGGPTGVGGKGGLGGSGDS 485 G G G GG+G G V G T G + S + Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 31.6 bits (71), Expect = 0.010 Identities = 36/116 (31%), Positives = 41/116 (35%), Gaps = 7/116 (6%) Query: 234 SGAAGAAGAAGAATTVTGGNGAPGSPGNPGGAGGAGGAVAGTAPLATGGNGAIG-GAGTP 292 SG G GA +T NG P G GGA G + P G I G G+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 293 GANGGAGGAGGAATTTGTNAVAVGGNGADGGAGGTGVTTGGAGGAGGAATSTTGAA 348 NGG G G + TG G A G GAGG A S + A Sbjct: 62 HGNGGGNGNSGGGSGTG------GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 30.1 bits (67), Expect = 0.027 Identities = 33/114 (28%), Positives = 41/114 (35%), Gaps = 2/114 (1%) Query: 260 GNPGGAGGAGGAVAGTAPLATGGNGAIGGAGTPGANGGAGGAGGAATTTGTNAVAVGGNG 319 G+ GA G + G G GA G+G N GG G+ G + GNG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG--SGHGNG 65 Query: 320 ADGGAGGTGVTTGGAGGAGGAATSTTGAASGGNGGNGGAGGIGAAGESGGVGAV 373 G G G TGG A A + A G G A I A S + + Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADI 119 Score = 30.1 bits (67), Expect = 0.032 Identities = 29/108 (26%), Positives = 36/108 (33%), Gaps = 4/108 (3%) Query: 286 IGGAGTPGANGGAGGAGGAATTTGTNAVAVGGNGADGGAGGTGVTTGGAGGAGGAATSTT 345 + G G N GA G T GG G GG G+G + Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 346 GAASGGNGGNGGAGGIGAAGESGGVGAVGGTGGTGSNATGVGGTGTVG 393 G +GG GN G G +G G + AV G A G G + Sbjct: 61 GHGNGGGNGNSG----GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.3 bits (151), Expect = 2e-14 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 10/162 (6%) Query: 2 GRRRGEALDAAIQAAALRLLAEHGPEAVTMESVAVAAHTSKPVLYRRWPDRRALLRDTLL 61 ++ + I ALRL ++ G + ++ +A AA ++ +Y + D+ L + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 62 GIATTSIPSPDT--GSFRGDMLAVLR-GWAALFTGDSAQPMRSVALAVAVDPELAAAFRT 118 + F GD L+VLR + + R + + + Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 119 DVLGMRK-------DQMNAILARAIERGEVRADVPVDLVREL 153 V ++ D++ L IE + AD+ + Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAII 166
>INTIMIN#Intimin signature. Length = 939 Score = 28.9 bits (64), Expect = 0.027 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 45 GSGKSTLSYAIAGH-PKYTVTSGSITLDGEDVLEMSIDERARAGLFLAMQYPIE-VPGVS 102 GS + +AGH K T S +T + +++ A+ L Q + G Sbjct: 128 GSAPLVAAGGVAGHTNKLTKMSPDVTKS-NMTDDKALNYAAQQAASLGSQLQSRSLNGDY 186 Query: 103 MSNFLRTAATAVRGEAPKLRHWVKEVKTAMSDLGIDPAFSERSVN 147 + A L+ W++ TA +L F S++ Sbjct: 187 AKDTALGIAGNQASSQ--LQAWLQHYGTAEVNLQSGNNFDGSSLD 229
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 53.9 bits (129), Expect = 1e-10 Identities = 61/275 (22%), Positives = 102/275 (37%), Gaps = 60/275 (21%) Query: 6 VSGSASGMGRAVAERLVAAGHSVIGVDIKDA--DVVADLSTAAARH--------AAADAV 55 ++G+A G+G AVA L + G + VD + V A ARH + A+ Sbjct: 13 ITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAI 72 Query: 56 LDRCG------GVLDGAVLAAGL---GPIPGRDDTIVQ----VNYFGVVDLLIALRPALA 102 + G +D V AG+ G I D + VN GV + ++ + Sbjct: 73 DEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYMM 132 Query: 103 RAGAAKVVVVASNSTTVTPAVPRRAVRALLNGDPAKALRAVRWFGKRSAPMSYAATKIAV 162 + +V V SN VPR ++ A YA++K A Sbjct: 133 DRRSGSIVTVGSNPA----GVPRTSMAA------------------------YASSKAAA 164 Query: 163 SRWVRRHAVTREWAGAGIRLNALAPGAVMTPL-LSEQLSNPAEAKAINAFP------VPV 215 + + + E A IR N ++PG+ T + S + I +P+ Sbjct: 165 VMFTK--CLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPL 222 Query: 216 GGYGDAGHLADWMVFMLSDAAEFLCGSVIFVDGGS 250 +AD ++F++S A + + VDGG+ Sbjct: 223 KKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGGA 257
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.8 bits (147), Expect = 1e-13 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Query: 21 RDLSAGRHQRRHRIVSAAVTLAAD-GYDAVQLRLVAEDAGVSTSTIYHYFSSKDDLLVAC 79 R + R I+ A+ L + G + L +A+ AGV+ IY +F K DL Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 80 FHR-WIVANDLAIRAELAPIADPTERLRRVIYRMTESL 116 + +L + + DP LR ++ + ES Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLEST 100
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.4 bits (247), Expect = 4e-27 Identities = 81/255 (31%), Positives = 122/255 (47%), Gaps = 18/255 (7%) Query: 9 RTAVITGGASPRGIGRATADRLARDGWSVAIVDIDEAAATR--TAEELADRHSVSTLGVG 66 + A ITG A +GIG A A LA G +A VD + + ++ + RH+ + Sbjct: 9 KIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA---FP 63 Query: 67 ADVAEEDSVHAAVVRIESALPPIIGLANIAGVSSPTEFLDVTPAEWDRVFNVNMRGTFLV 126 ADV + ++ RIE + PI L N+AGV P ++ EW+ F+VN G F Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 127 TQRVLPAMIAAEVGRIVSVSSISAQRGGGTYSKVAYSASKAAVIGFSRALAREMGPHNIT 186 ++ V M+ G IV+V S A G S AY++SKAA + F++ L E+ +NI Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 187 VNSVAPGPIDTDIMGGTLTDERK---------AQMSADIPLGRVGTVEEVAALMAFLMSE 237 N V+PG +TD+ DE IPL ++ ++A + FL+S Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 238 DAGFITAATYDINGG 252 AG IT ++GG Sbjct: 242 QAGHITMHNLCVDGG 256
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 121 bits (304), Expect = 5e-34 Identities = 59/315 (18%), Positives = 109/315 (34%), Gaps = 61/315 (19%) Query: 9 RLFTGDVTHAPDWDAVLRLFQPSQIVHLAAETGTAQSLSAATRHGSVNVVGTTQLVDALS 68 + D+ + ++ SL + N+ G +++ Sbjct: 55 QFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR 114 Query: 69 RAGYIPEHLILASSRAVYGEGAWGFGADVFYPPPRTHAQLSAGHWDPKGPDGVSAAPLAS 128 +HL+ ASS +VYG + Sbjct: 115 HNK--IQHLLYASSSSVYG----------------------------------LNRKMPF 138 Query: 129 AASRTEPRPTNIYASTKLAQEHILAAWTAAHGAGLSI--LRLQNVFGPGQSLTNSYTGIV 186 + + P ++YA+TK A E L A T +H GL LR V+GP + Sbjct: 139 STDDSVDHPVSLYAATKKANE--LMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALF--- 193 Query: 187 ALFARLSRARQSLEVYEDGRILRDFVYIDDVVDALFAAVRQPST-DARW----------- 234 F + +S++VY G++ RDF YIDD+ +A+ D +W Sbjct: 194 -KFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASI 252 Query: 235 -----FDVGSGVSTTIHELAAMTARLCGAPDPRVVGKFRDGDVRAAKCDIRAAVDELGWR 289 +++G+ + + G + + + GDV D +A + +G+ Sbjct: 253 APYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFT 312 Query: 290 PEWALEDGLLALLDW 304 PE ++DG+ ++W Sbjct: 313 PETTVKDGVKNFVNW 327
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 215 bits (549), Expect = 5e-70 Identities = 84/346 (24%), Positives = 145/346 (41%), Gaps = 39/346 (11%) Query: 3 NVVVTGGYGFVGSHLVTALLDRGDTVTVFDYAKNTHDTSIDFDR-----YPGFRFVQGDV 57 +VTG GF+G H+ LL+ G V D + +D S+ R PGF+F + D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 58 TDLEALEAAI-TPEVDSVFHLASVVGVNKYVEDPLRVVDVSVIGTRNVLTLCHRHG-ARL 115 D E + + + VF + V +E+P D ++ G N+L C + L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 116 VFTSTSEVYGKNPGIPWKEDDDRVLGSTRTARWSYSTSKAMAEHMVFGMHDAHGLPVTVV 175 ++ S+S VYG N +P+ DD S Y+ +K E M +GLP T + Sbjct: 122 LYASSSSVYGLNRKMPFSTDD-----SVDHPVSLYAATKKANELMAHTYSHLYGLPATGL 176 Query: 176 RFFNVYGPRQNPIFVLSKSIHRILNGREPLLYDSGDQTRCFTYVDDAVAGTLLAA----- 230 RFF VYGP P L K +L G+ +Y+ G R FTY+DD + Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPH 236 Query: 231 ------------GSEAAIGEVFNIGSMTETTMREAVDLAIKIAKVDAVSSTAAFDTAERY 278 + A V+NIG+ + + + + ++A + Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPG--- 293 Query: 279 GARYEDIPRRVPDSTKAQQMLGWQLKIDLEEGIRRTIDWARENPWY 324 D+ D+ +++G+ + +++G++ ++W R+ +Y Sbjct: 294 -----DVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD--FY 332
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 28.8 bits (64), Expect = 0.035 Identities = 9/35 (25%), Positives = 17/35 (48%) Query: 191 VVGAVDECSARACATLWRHALGVDSVIVEDPRTAE 225 + G++ C+ A A + R +G+D + TA Sbjct: 84 LFGSISHCATTALAVISRQRIGIDIEKIMSQHTAT 118
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 29.5 bits (66), Expect = 0.011 Identities = 52/242 (21%), Positives = 91/242 (37%), Gaps = 16/242 (6%) Query: 31 LPQVAVLTARILRR----WSRD-PATLVQSLVMPAVFLAALDIVLGDVIEQVTGNSGLY- 84 LP ++ + RR W + A+L+ L P ++L L LG ++ +V G S Sbjct: 9 LPGGSLNWIAVWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAF 68 Query: 85 ---GQVPLVALVGGMTGAIIGAVGIMRERDVGLLSRFWVVPVHRAAGLLARLTADFVRIV 141 G V A+ I A G M + + +L + + Sbjct: 69 LAAGMVATSAMTAATFETIYAAFGRMEGQ--RTWEAMLYTQLRLGDIVLGEMAWAATKAA 126 Query: 142 VITIVVMGVGLALGFRFEQGIPAAIAWVFMPALFGVALSAAVLTLALFSSSTIAPQATEI 201 + + V ALG+ + A+ + + L +L V LA I Q + Sbjct: 127 LAGAGIGVVAAALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQT--L 184 Query: 202 VIAILMFFSIGFVPLDQYPEWLQPFVENQPVSTTIEAMKGLSLEGP---IAEPVLFSVLW 258 VI ++F S P+DQ P Q P+S +I+ ++ + L P + + V ++ Sbjct: 185 VITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIY 244 Query: 259 AV 260 V Sbjct: 245 IV 246
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 34.3 bits (78), Expect = 0.004 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 1423 VSGALGGVGLAVVRWLVEAGAGRVVLNGRSAASAEAQSVLDELSARAEIVTVLGDIAAPG 1482 ++GA G+G AV R L GA ++ + S L + AE D+ Sbjct: 13 ITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA--DVRDSA 70 Query: 1483 VAERLTAAAEETGKPLRGLIHSAAVLADELVVGLTRESLDTIWTPKALGAWRLHEVTAT 1541 + +TA E P+ L++ A VL L+ L+ E + ++ + G + + Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 37.7 bits (87), Expect = 4e-04 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 2/90 (2%) Query: 1662 VVDENGSASVEFIDWSSMTRAQTVGELRTRLRAILARELGMPDAAVDFDAAFPELGLDSM 1721 ++D+ +A + S+ T + V +R +A L + + GLDS+ Sbjct: 206 LLDQLQNAPADVQKTSANTGKKNVFTCEN-IRKQIAELLQETPEDITDQEDLLDRGLDSV 264 Query: 1722 MAMNLLRDAKQLVRVDLSATMLWNHPSIAQ 1751 M L+ ++ +++ L P+I + Sbjct: 265 RIMTLVEQWRR-EGAEVTFVELAERPTIEE 293
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 30.8 bits (69), Expect = 0.045 Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 1712 APAKAWTEMSSEEVLAELEAGLRAVLAIELRIADDEVATDRPFAEMGLNSVMAMSIRREV 1771 A + + + ++ + E +R +A L+ +++ + GL+SV M++ + Sbjct: 215 ADVQKTSANTGKKNVFTCEN-IRKQIAELLQETPEDITDQEDLLDRGLDSVRIMTLVEQW 273 Query: 1772 EQLAGIELSATMLWNHPTI 1790 + G E++ L PTI Sbjct: 274 RR-EGAEVTFVELAERPTI 291
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 30.6 bits (69), Expect = 0.011 Identities = 10/63 (15%), Positives = 26/63 (41%) Query: 64 GLVTSAVMGIVVGRWLDRYGPRWIMTTGSVLGALAVLAVTAAPNYPMFVAAWVVAGLAMS 123 G ++ + G + G +DR GP +++ G +++ L + + ++ + Sbjct: 302 GTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGG 361 Query: 124 AVF 126 F Sbjct: 362 LSF 364 Score = 30.6 bits (69), Expect = 0.012 Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 4/115 (3%) Query: 257 AVALGLGGAGQVLGRLGYQTLVRRVRVVPRTVIIMGCVAATTALLGLFASYAALALIAIA 316 A L V G+L Q ++R+ + + G V A + Sbjct: 57 AFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG 116 Query: 317 AGMVRGIMTLLQATAVTERWGATHYGHLSGILSAPVMIATALGPFIGAALASLLH 371 A ++ ++ A + + + G G++ + V + +GP IG +A +H Sbjct: 117 AAAFPALVMVVVARYIPKE----NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIH 167
>PERTACTIN#Pertactin signature. Length = 922 Score = 33.9 bits (77), Expect = 2e-04 Identities = 24/70 (34%), Positives = 27/70 (38%) Query: 63 ALPGPLAPPPVVPPLAPPPIPPVVPPLAPPPIPPVVPPLAPPPVPPVIPPAAPLVPLAGA 122 +L G APP P P P P PP P P P PP P P P P A Sbjct: 561 SLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSA 620 Query: 123 ADGLPLSTMG 132 A ++T G Sbjct: 621 AANAAVNTGG 630
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 76.2 bits (187), Expect = 2e-18 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 8/188 (4%) Query: 8 ALVTGASGGIGEEFAVQLAQRGANLILVARRADKLTAL--RETLLARHPGIVVDVLAADL 65 A +TGA+ GIGE A LA +GA++ V +KL + ARH + AD+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA----EAFPADV 66 Query: 66 AVPGSGAELQSGIRELGRTVDVLVNNAGVGLHGKFVTQEPEGNAAQI-QLNCGTLVDLTA 124 + E+ + I +D+LVN AGV L + + +N + + + Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 125 RFLPGMVERSTGVVINVASTAAFQPTPGMAVYGATKAFVLSYSEALWQECRGTGVTILAL 184 M++R +G ++ V S A P MA Y ++KA + +++ L E + + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 185 CPGATETE 192 PG+TET+ Sbjct: 186 SPGSTETD 193
>PF06872#EspG protein Length = 398 Score = 27.8 bits (61), Expect = 0.027 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 46 SSTGLPDPIPDSPGGPPLPPSTALVDVMARLSDPAVPGNEKITLIERGTPAEAAGLDRFA 105 S+T +P P P ST +D L GN K++L PA+A L R Sbjct: 180 SATLIPHNNQTDPLSGLTPFSTVFMDTSRGL------GNSKLSLNGVDIPADAQKLLRNT 233 Query: 106 TALRDNGSLP 115 L+D S P Sbjct: 234 LGLKDTNSSP 243
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.7 bits (170), Expect = 1e-16 Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 6/174 (3%) Query: 10 GADRRAAVISAAEAEFAAHGFSAGSLNVIARRAGVAKGSLFQYFADKRDLYAFITDVGSQ 69 + R ++ A F+ G S+ SL IA+ AGV +G+++ +F DK DL++ I ++ Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 70 RVRSYMEDQITRL--DPIRPFFEFLTDLLDVWVGYFAEHPRDRALHAAASFEVDTDARVS 127 + + + DP+ E L +L+ V + F + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 128 VRAVVHRHYLQVLRPLVRDAQARGDLRPDGD----ADALLSLLLMLLPHLALAP 177 + + + ++ L D A + + L+ + AP Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182
>PF06580#Sensor histidine kinase Length = 349 Score = 39.8 bits (93), Expect = 2e-05 Identities = 38/223 (17%), Positives = 78/223 (34%), Gaps = 52/223 (23%) Query: 338 ELAALQGQLSSHKSVTDTLRAQTHEFA-NQLHTISGLVQLGEYEAVRDLVGTLTR-RRAE 395 +L AL+ Q++ H F N L+ I L+ +A R+++ +L+ R Sbjct: 162 QLMALKAQINPH-------------FMFNALNNIRALILEDPTKA-REMLTSLSELMRYS 207 Query: 396 ISDAVTQHIS-----DPAVAALLIAKTSLAAESGVALHLDPASHLAALEPALATDVITLL 450 + + + +S + L +A ++PA + P + L+ Sbjct: 208 LRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQV-PPM------LV 260 Query: 451 GNLIDNAVD--VSVGAPDACVTIGIDDRDG-LTISVLDTGPGVPEHLREAIFARGVTSKS 507 L++N + ++ + + +G +T+ V +TG ++ +E Sbjct: 261 QTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE----------- 309 Query: 508 DVPGGRGIGLALV--RLVTA---QHGGTIEVSDGPGGGARFLV 545 G GL V RL + + G A L+ Sbjct: 310 ----STGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 3e-19 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%) Query: 4 VLVVDDDFMVAEIHRRFVDRVNGFRAVGVARTGAEALAAIRELRPQLILLDVYLPDMTGL 63 +LV DDD + + + + R G+ + A I L++ DV +PD Sbjct: 6 ILVADDDAAIRTVLNQALSRA-GYDVRITS-NAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 64 DVLQRLRSEGDRVDVIMITAARELDTVRGALDGGAADYLIKPFEFPQL---------ETK 114 D+L R++ + V++++A T A + GA DYL KPF+ +L E K Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 115 LQAYATRADALQSAGGVDQS 134 + D+ V +S Sbjct: 124 RRPSKLEDDSQDGMPLVGRS 143
>FLAGELLIN#Flagellin signature. Length = 507 Score = 34.6 bits (79), Expect = 0.006 Identities = 32/269 (11%), Positives = 57/269 (21%), Gaps = 3/269 (1%) Query: 1589 SFGFQATPGGGSATATNFSVNGVQNPTPVLPKVTVADATVAEGNSGTKNIVFTVTLDKAA 1648 + G + + + L V A + D A Sbjct: 140 DNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYA 199 Query: 1649 SAPVSVAYTTAGGTATAGSDFTAKSGVVTFAAGVLSQQISIAVAGDSVVEANETFTVTLS 1708 G + V A A +V T + + Sbjct: 200 VGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGT 259 Query: 1709 NPTGVTIADGSAVGTITNDDVAPVLPKVTVADATVAEGNSGTKNIVFTVTLDKAATAPVS 1768 D V + G T VTL A + Sbjct: 260 AEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGA 319 Query: 1769 VAYTTANGTAASGSDFTAKSGVVTFAAGVLS--QQISIAVAGDTAVETNETFTVTLSNPT 1826 A ++ + +G TF + ++S A + + TV + T Sbjct: 320 ANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGES-KITVNGAEYT 378 Query: 1827 GVTIADGSAVGTITNDDVVTPTPGNSSAA 1855 D + T T + ++ Sbjct: 379 ANAAGDKVTLAGKTMFIDKTASGVSTLIN 407
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 42.8 bits (101), Expect = 2e-06 Identities = 32/147 (21%), Positives = 50/147 (34%), Gaps = 25/147 (17%) Query: 154 IALTGASGLVGSALSAFLTTGGHRVI-------------KLVRNAAGAD--------DER 192 +TGA+G +G +S L GH+V+ K R A D Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 193 QWDPMAPAPDLLEGVDAVVHLAGASIAGRFTAEHRAAIRDSRIEPTRRLAAVAAATENGP 252 + M + V A R++ E+ A DS + L + N Sbjct: 63 DREGMTDLFAS-GHFERVFISPHRL-AVRYSLENPHAYADSNLTGF--LNILEGCRHNKI 118 Query: 253 RTFVSASAVGFYGFDRGDTQLTEDSTR 279 + + AS+ YG +R T+DS Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVD 145
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 4e-04 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 10/93 (10%) Query: 136 ESEKMLADARAQADQLVTEARQTAETTVTEARQRADAMLADAQSRSETQLRQAQEKADAL 195 E E +A + ++ Q E+ + A++ + ++ +LRQ + L Sbjct: 256 EQENKYVEAVNELRVYKSQLEQI-ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 196 Q-----ADAERKHSEIM----GTINQQRTVLEG 219 + ++ S I + Q + EG Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEG 347 Score = 31.0 bits (70), Expect = 0.006 Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 14/150 (9%) Query: 113 LRAAKILSLAQDTADRLTGSAKSESEKMLADARAQADQLVTEARQTAETTVTEARQRADA 172 R+ ++ L + E++L +Q T Q + + ++RA+ Sbjct: 157 SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAER 216 Query: 173 MLADAQ-SRSETQLRQAQEKADALQA-------------DAERKHSEIMGTINQQRTVLE 218 + A+ +R E R + + D + + E K+ E + + ++ LE Sbjct: 217 LTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLE 276 Query: 219 GRLEQLRTFEREYRTRLKTYLESQLEELGQ 248 ++ + + EY+ + + L++L Q Sbjct: 277 QIESEILSAKEEYQLVTQLFKNEILDKLRQ 306
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 28.6 bits (64), Expect = 0.028 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 10/122 (8%) Query: 123 AEALEDGRRTEPLRVYLQLSLDGDEQRGGVDVDAADRIDQLCAAVDAAPGLAFVGLMAIP 182 +AL++ R PL +YL+ ++ R G DR+ + + A + + LM+ Sbjct: 106 LKALQNARLKAPLDIYLK--VNSGMNRLGF---QPDRVLTVWQQLRAMANVGEMTLMSHF 160 Query: 183 PLGADPGESFARLQRERDRVQQ-DFQQRLGLSAGMSGDLEAAVEHGSTCVRVGTALMGSR 241 P + R + + ++ L SA EA + VR G L G+ Sbjct: 161 AEAEHPDGISGAMARIEQAAEGLECRRSLSNSAATLWHPEAHFDW----VRPGIILYGAS 216 Query: 242 PL 243 P Sbjct: 217 PS 218
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 32.4 bits (73), Expect = 0.003 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Query: 5 PTDDTTAGQAPDDPAEPPPEPAPADTEAAEPAAEPAEKPAGAPADE 50 P D T G A A+P PE +PA+ A PA P E P P E Sbjct: 311 PRPDLTPGSAEAPNAQPLPEVSPAENPANNPA--PNENPGTRPNPE 354
>PERTACTIN#Pertactin signature. Length = 922 Score = 35.1 bits (80), Expect = 4e-04 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 202 LVQDATGNWVVVGTPKPAEGLPPPPLNAPLPEPARPAPPAPRVVEPLEVPVRIPSAPAPP 261 L + G W +VG P P P P P+ +P + P R P APAP Sbjct: 552 LAANGNGQWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQ 611 Query: 262 LIPGAGPAL 270 P AG L Sbjct: 612 --PPAGREL 618 Score = 28.5 bits (63), Expect = 0.048 Identities = 16/46 (34%), Positives = 17/46 (36%) Query: 308 PAPGPAPEVPATATVPAAPAIPGPPPAAPLVADQFAPVPPAPGAPA 353 PAP PAP+ P P P Q P PAP PA Sbjct: 569 PAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPA 614
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 108 bits (270), Expect = 1e-28 Identities = 65/185 (35%), Positives = 88/185 (47%), Gaps = 1/185 (0%) Query: 272 VAITGAASGIGRETALAFARDGADVVISDLNADGLAETARLVAAEGAEAHTYTVDVADPA 331 ITGAA GIG A A GA + D N + L + + AE A + DV D A Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 332 AVEAFAEQVCAQHGVPDVVVNNAGVGHAGFFLDTPAEEFDRVLDINFGGVVNGCRSFGKR 391 A++ ++ + G D++VN AGV G EE++ +N GV N RS K Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 392 LADRGTGGYIVNVASMASYSPLSVMNAYCTSKAAVFMFSDCLRAELDAAGIGVTTICPGV 451 + DR G IV V S + P + M AY +SKAA MF+ CL EL I + PG Sbjct: 131 MMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 452 IGTNI 456 T++ Sbjct: 190 TETDM 194
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 132 bits (333), Expect = 7e-40 Identities = 85/251 (33%), Positives = 123/251 (49%), Gaps = 6/251 (2%) Query: 3 RVAVVTGGASGMGEATCHELGRRGHAVAVLDLDEVAAQRVVDSLRADGVSALAVGVDVSD 62 ++A +TG A G+GEA L +G +A +D + ++VV SL+A+ A A DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 63 HAAVGEAFAKVRTELGPVHILVTSAGMVAFAPSIEITPADWKRVIDVNLTGTFYCCQSAL 122 AA+ E A++ E+GP+ ILV AG++ ++ +W+ VN TG F +S Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 123 PDMIEAGWGRIVMISSSSAQRGSPGMAHYAASKGALISLTKSFAREYGPTGITVNNIPPS 182 M++ G IV + S+ A MA YA+SK A + TK E I N + P Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 183 GIETPMQHQSQAEGHLPPN------EQMAASIPIGHLGTGDDIAAAVGFLCSEEAGFITG 236 ET MQ A+ + E IP+ L DIA AV FL S +AG IT Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 237 QTLGVNGGSVM 247 L V+GG+ + Sbjct: 249 HNLCVDGGATL 259
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.3 bits (60), Expect = 0.036 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 4/102 (3%) Query: 41 IAKWVVPPVSKVIAAREAMLAKTAADNRKSAEQ-VAAAQADYDETMAGARSQASSIRDEA 99 IA+ PV A + +T A+N K + V + D ET A R A + Sbjct: 1017 IARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNV 1076 Query: 100 RTAGRQVVDEKRAEASDEVAETVRQADAELSDQRASTQTQLQ 141 + + + A++ E ET E + + +++ Sbjct: 1077 KANTQT---NEVAQSGSETKETQTTETKETATVEKEEKAKVE 1115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 52.5 bits (126), Expect = 3e-10 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%) Query: 2 RIVIAEDSALLRAGIERILTDAGHQVVAGVPDATNLLRLVNDEHPDLAILDVRMPPTFTD 61 I++A+D A +R + + L+ AG+ V +A L R + DL + DV MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPD---E 60 Query: 62 EGIRAAALLRSQNPESPVLVLSHY 85 ++ P+ PVLV+S Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQ 84
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 26.3 bits (58), Expect = 0.039 Identities = 20/55 (36%), Positives = 22/55 (40%) Query: 25 PPELAGLWELPGGKLAPGESDRAGLARELREELGIDVTVGDRLGEDVALSASVTL 79 PPELA G L G + L R L EE GI V V + VA L Sbjct: 279 PPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKAL 333
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 28.6 bits (63), Expect = 0.017 Identities = 13/28 (46%), Positives = 15/28 (53%) Query: 83 ATPVSGPGATASINLPQPINTMQGTVPG 110 A SGP ASI LP PI+ +G P Sbjct: 26 ALSQSGPDGLASITLPLPISAERGFAPA 53
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 42.0 bits (98), Expect = 2e-06 Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 137 PMALPEVAHAPAAAAEPGVVPAAVPAPGPAP--VPGPAPAPGPAPAPGAEVATPVAAAPG 194 P P A AP A P V PA PA PAP PG P P P P + PG Sbjct: 313 PDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPG 372 Query: 195 FGPDAPVTQD 204 PD+P D Sbjct: 373 TRPDSPAVPD 382
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 25.4 bits (55), Expect = 0.042 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 7 MDFRLNGSAEENEAAASRILDLYSKWSPP-ASATFH 41 MD+ L G E+N +RI+ +Y P +A++H Sbjct: 372 MDYTLTGKVEDNHDDTNRIITVYMGKRPEGENASYH 407
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 26.8 bits (59), Expect = 0.031 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 37 RKSGRRYRTPLLVFQTRDGYAILVGY-GLQTDWLKNALA 74 KS + + + F ++DG I VG +Q D+L A Sbjct: 449 YKSKKSKTSKPMHFISKDGIDIYVGKNNIQNDYLTLKFA 487
>PERTACTIN#Pertactin signature. Length = 922 Score = 35.8 bits (82), Expect = 4e-04 Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 139 GLNGLLPPPPPPLDPFAPPPPPPAPAPFDAMAAPAPAPLPPAPEALPPAPLPPAPVDQLS 198 L G PP P P P P P P P P PP + PAP PPA +LS Sbjct: 561 SLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAG-RELS 619 Query: 199 APAPAPL 205 A A A + Sbjct: 620 AAANAAV 626 Score = 31.6 bits (71), Expect = 0.008 Identities = 32/85 (37%), Positives = 33/85 (38%), Gaps = 15/85 (17%) Query: 103 LASQGKGAWPTCGRPLSAATPRNVVADPPPAPVNPLGLNGLLPPPPPPLDPFAPPPPPPA 162 LA+ G G W G A PPAP P G P P PP P PP PP Sbjct: 552 LAANGNGQWSLVG------------AKAPPAP-KPAPQPGPQPGPQPPQPP--QPPQPPQ 596 Query: 163 PAPFDAMAAPAPAPLPPAPEALPPA 187 P APAP PPA L A Sbjct: 597 PPQPPQRQPEAPAPQPPAGRELSAA 621 Score = 31.2 bits (70), Expect = 0.010 Identities = 26/54 (48%), Positives = 27/54 (50%), Gaps = 6/54 (11%) Query: 155 APPPPPPAPAPFDAMAAPAPAPLPPAPEALPPAPLPPAPVDQLSAPAPAPLPPS 208 APP P PAP P P P P PP P P P PP P Q APAP PP+ Sbjct: 567 APPAPKPAPQP-----GPQPGPQPPQPPQPPQPPQPPQP-PQRQPEAPAPQPPA 614
>INTIMIN#Intimin signature. Length = 939 Score = 37.7 bits (87), Expect = 3e-04 Identities = 47/283 (16%), Positives = 82/283 (28%), Gaps = 34/283 (12%) Query: 771 TVTITVTEADGDTSPAPGIVFANSIPALRPTVAVASLPA--VYTIGKPGTALAPVVIIED 828 T T TV + + P S A+ + A+ T+ VV+ Sbjct: 579 TYTATVKKNGVAQANVPVSFNIVSGTAV-LSANSANTNGSGKATVTLKSDKPGQVVVSAK 637 Query: 829 LDSAVLTGATVSVGVGKQTGDALTYTAPPGITITVTGNGTSTLTFSGTATKEQYEAALEA 888 +V QT ++T T NG +T++ K + + Sbjct: 638 TAEMTSALNANAVIFVDQTKASITEIKADKTTAV--ANGQDAITYTVKVMKGDKPVSNQE 695 Query: 889 VTFSATGGALIPRTFAINVTDDSGLAALLPATASAVVKNPDAPTVVTVGLSGLALPTVGA 948 VTF+ T G L T D+ A + T++ K+ + V V + A Sbjct: 696 VTFTTTLGKLSNST----EKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKA------ 745 Query: 949 TVKPITLATIVDTDSTVLTGASVRITGNRTSGDTLGYSPIAGNPVTATYNSGTGELELSG 1008 + + + ++ I G G T G L+ SG Sbjct: 746 -------PEVEFFTTLTIDDGNIEIVGTGVKGKLP----------TVWLQYGQVNLKASG 788 Query: 1009 TATIAQYKQALEAVTFKATQFGGGFLDVTHIRTLSVYVTDDSN 1051 +Y + G + + T ++ V N Sbjct: 789 GNG--KYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDN 829
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 29.6 bits (66), Expect = 0.042 Identities = 35/168 (20%), Positives = 56/168 (33%), Gaps = 37/168 (22%) Query: 131 DVKGVVIGL--PEVTLGLLPGGGGVARTTRMFGIQKAFMEVLSQGTRFKPGKAKDIGLVD 188 + GV G P ++ G G G + TR + I KA M + GK IG + Sbjct: 227 FINGVAAGALNPFISAGEALGIGDILYGTR-YAIDKAAMRNI--APLPAEGKFAVIGGLG 283 Query: 189 ELVGSVEELIPAAKAWIKANPDSHTQPWDVKGYKMPGGTPSSPALAAILPSFPALLRKQL 248 + G + A WI+ NP+ ++ + A+ A +L Sbjct: 284 SVAGFEKNTREAVDRWIQENPN------------------AAETVEAVFNVAAAAKVAKL 325 Query: 249 KGAPMPAPRAILDAVVEGAQVDFDTASRIESRYFTTLVTGQTAKNMIQ 296 A P A+ DF + Y L +A+ + Q Sbjct: 326 AKAAKPGKAAVSG--------DFADS------YKKKLALSDSARQLYQ 359
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 127 bits (319), Expect = 1e-37 Identities = 81/251 (32%), Positives = 117/251 (46%), Gaps = 15/251 (5%) Query: 11 KVAIVTGAGGGIGQAYAEALAREGAAVVVADLNLEGAQKVADGIKGEGGNALAVRVDVSD 70 K+A +TGA GIG+A A LA +GA + D N E +KV +K E +A A DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 71 IDSAKDMAAQTLSEFGGIDYLVNNAAIFGGMKLDFLITVDWDYYKKFMSVNLDGALVCTR 130 + ++ A+ E G ID LVN A + + L +W + SVN G +R Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEW---EATFSVNSTGVFNASR 125 Query: 131 AVYRKMAKRGGGAIVNQSSTAA---WLYSNFYGLAKAGVNSLTQQLATELGGQNIRVNAI 187 +V + M R G+IV S A Y +KA T+ L EL NIR N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 188 APGPIDTEANRTT-TPQEMVADIVK--------GIPLSRMGEVDDLTGMCLFLLSDQAKW 238 +PG +T+ + + ++K GIPL ++ + D+ LFL+S QA Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 239 VTGQIFNVDGG 249 +T VDGG Sbjct: 246 ITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.9 bits (124), Expect = 2e-10 Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 5/135 (3%) Query: 20 RRQEETFRKVLAAGLEMLRETSYADLTVRAVAARAKVAPATAYTYFSSKNHLIAEIYLDL 79 + +ET + +L L + + + ++ +A A V Y +F K+ L +EI+ Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 80 MQKV-----EYFTDVNDSKATRVEATLRTMALTLADDPEVAAACTTALLSSSDAAVRAVR 134 + EY + + L + + + AV Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 135 ERIGTEIHRRIRAAV 149 ++ + + Sbjct: 127 QQAQRNLCLESYDRI 141
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 117 bits (294), Expect = 8e-34 Identities = 67/191 (35%), Positives = 105/191 (54%) Query: 13 ALVAGASSGIGEATAIDLAARGFPVALGARRVEKLEQIVDKIRADGGEAIAVHLDVTDPD 72 A + GA+ GIGEA A LA++G +A EKLE++V ++A+ A A DV D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 73 SVKAAVEQTTSELGDIEVLVAGAGDTYFGKLDAISTEQFESQIQIHLIGANRVATAVLPG 132 ++ + E+G I++LV AG G + ++S E++E+ ++ G + +V Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 133 MIERQRGDLIFVGSDVALRQRPHMGAYGAAKAALVAMVTNYQMELEGTGVRASIVHPGPT 192 M++R+ G ++ VGS+ A R M AY ++KAA V +EL +R +IV PG T Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 193 KTSMGWSLPAD 203 +T M WSL AD Sbjct: 191 ETDMQWSLWAD 201
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 73.2 bits (179), Expect = 3e-17 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 21/216 (9%) Query: 4 LDGRVVIVTGAGGGIGRAHAMAFAAEGARVVVNDIGVGLDGSPAGGGSAAQNVVDEIVAA 63 ++G++ +TGA GIG A A A++GA + +D +P + VV + A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIA------AVDYNP----EKLEKVVSSLKAE 55 Query: 64 GGEAVTSGANVADWTQAEGLIQTAVDSFGGLDVLVNNAGIVRDRMFANTSEEEFDAVTAV 123 A A+V D + + G +D+LVN AG++R + + S+EE++A +V Sbjct: 56 ARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSV 115 Query: 124 HLKGHFATMKHAAAYWRAKVKSGEAGPDTLHARIINTSSGAGLQGSVGQANYSAAKAGIA 183 + G F + + Y + +SG I+ S A Y+++KA Sbjct: 116 NSTGVFNASRSVSKYMMDR-RSGS---------IVTVGSNPAGVPRTSMAAYASSKAAAV 165 Query: 184 ALTLVAAAEMGRYGVNVNAIAP-SARTRMTETVFAD 218 T E+ Y + N ++P S T M +++AD Sbjct: 166 MFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWAD 201
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 100 bits (249), Expect = 2e-27 Identities = 70/254 (27%), Positives = 108/254 (42%), Gaps = 23/254 (9%) Query: 21 GLARRVVLVTGGVRGVGAGISKVFADQGATVITCARRP-----VEQS-------PYEFRA 68 G+ ++ +TG +G+G +++ A QGA + P V S F A Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 69 CDIRDDDAVKALIDGVAADHGRLDVVVNNAGGSPYVPAAEASAKFSTKILQLNLLGALSV 128 D+RD A+ + + + G +D++VN AG S + +N G + Sbjct: 65 -DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 129 STHANAVMQNQDSGGSIVNISSVSGHRPTPGTAAYGAAKAGIDNLTATLAVEWAP-KVRV 187 S + M ++ GSIV + S P AAY ++KA T L +E A +R Sbjct: 124 SRSVSKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 188 NSVVVGMVETEQAELFYGDADSIAAISKN--------VPLGRLAKPDDIGWATAFLASDA 239 N V G ET+ + D + + K +PL +LAKP DI A FL S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 240 ASYISGASLEVHGG 253 A +I+ +L V GG Sbjct: 243 AGHITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 85.1 bits (210), Expect = 1e-22 Identities = 33/191 (17%), Positives = 73/191 (38%), Gaps = 6/191 (3%) Query: 8 RRDELLALAATMFAERGLRATTVRDIADSAGILSGSLYHHFSSKEEMVDEVL-RNFLDWL 66 R +L +A +F+++G+ +T++ +IA +AG+ G++Y HF K ++ E+ + + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 67 FARYQEIVATEPNPLERLKGLFMSSFEAIET---RHAEVVIYQDEAKRLSSQERFAYVD- 122 + +PL L+ + + E+ T R + I + + + Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 123 ERNREQRKMWVDVLNQGIKEGYFRPDVDVDLVYRFIRDT-TWVSVRWYQPGGPLTAEEVG 181 E L I+ D+ +R + + W ++ Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEA 191 Query: 182 RQYLSIVLGGI 192 R Y++I+L Sbjct: 192 RDYVAILLEMY 202
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 43.6 bits (103), Expect = 6e-07 Identities = 52/241 (21%), Positives = 89/241 (36%), Gaps = 39/241 (16%) Query: 1 MKPIAIIGAASFVGARFVERAELLGDFSIV--------PIVRSPRSQGRLARFGTRLALG 52 MK + GAA F+G +R G + + LA+ G + Sbjct: 1 MK-YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 53 DAGDPASLVPLLRGCGM--VVNL--------TLGD-----DRRIVGDVQAIHAACEEAEV 97 D D + L V +L + D + G + I C ++ Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLN-ILEGCRHNKI 118 Query: 98 PLFVHMSSAEVFGRAEDPGLSDDSVADSPHWMEYAHGKRAAE--AWLRSQADGPVRVVIL 155 ++ SS+ V+G S D D P + YA K+A E A S G + L Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSL-YAATKKANELMAHTYSHLYG-LPATGL 176 Query: 156 RPGLIWGPGAGW------LVDPAKALVEGTAY-LFNEGRGICNLIHVDNLVEHVLQLATA 208 R ++GP W L KA++EG + ++N G+ + ++D++ E +++L Sbjct: 177 RFFTVYGP---WGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 209 P 209 Sbjct: 234 I 234
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 36.6 bits (84), Expect = 2e-04 Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 25/176 (14%) Query: 68 HPNIVSVHDSGV----HDGRPFIIMERLPG-------RTLADVMADGPMPP----AQVRS 112 HPN+ +VH V + ++M+ + G RTLAD G + ++ Sbjct: 190 HPNLANVHGMAVVPYGNRKEEALLMDEVDGWRCSDTLRTLADSWKQGKINSEAYWGTIKF 249 Query: 113 VLDDVLAALSAAHAAGVLHRDIKPANILVSTTGDCMKVADFGIAKTGGAAHTTTG-QIVG 171 + +L + AGV+H DIKP N++ V D G+ H+ +G Q G Sbjct: 250 IAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGL-------HSRSGEQPKG 302 Query: 172 -TLCYMSPERITG-APASVRDDLYAVGIIGYEALLGRRAFPQDNPAALARAIIDAP 225 T + +PE G AS + D++ V + G P+ P R I P Sbjct: 303 FTESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRFITSEP 358
>PF01206#SirA family protein Length = 76 Score = 25.9 bits (57), Expect = 0.026 Identities = 6/24 (25%), Positives = 14/24 (58%) Query: 111 DVVAILAERPGLKRNVPAFDQSQG 134 +V+ ++A PG ++ +F + G Sbjct: 33 EVLYVMATDPGSVKDFESFSKQTG 56
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 40.7 bits (95), Expect = 1e-05 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 756 PGSIVTIQISNGIAPPPPPPPAGAPPPGLPPPPVGETVIQIPGLPPITVPVLGPPPPPPP 815 P +++ + PP P P + P P E + + P V + P P P P Sbjct: 41 PAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP--KEAPVVIEKPKPKPKP 98 Query: 816 PP 817 P Sbjct: 99 KP 100 Score = 33.4 bits (76), Expect = 0.002 Identities = 12/47 (25%), Positives = 16/47 (34%) Query: 768 IAPPPPPPPAGAPPPGLPPPPVGETVIQIPGLPPITVPVLGPPPPPP 814 I PP P P P P + V ++ P V + P P Sbjct: 78 IPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASP 124
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 34.6 bits (79), Expect = 0.002 Identities = 27/139 (19%), Positives = 38/139 (27%), Gaps = 4/139 (2%) Query: 99 PDIELPADPDVDAELPSDPDLEVPAEVPTDTESE-ESPPEAETPTASGDGPVLGGDPDEN 157 P P + +P V E E E P E P + PV+ P Sbjct: 39 PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEA---PVVIEKPKPK 95 Query: 158 ATQPHLPPSSPTTTLTPDAEPSEPEVVSTLSTQRNATTLAASATTPPHLPQASVTVTAPP 217 P D +P E S A +++AT P SV Sbjct: 96 PKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 155 Query: 218 PPPAPLRQIVRALVVGVLG 236 + RA + + G Sbjct: 156 LSRNQPQYPARAQALRIEG 174
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 111 bits (278), Expect = 1e-33 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 2/145 (1%) Query: 13 QGAEVAELLQKALSRYNDLHLTLKHVHWNVVGPNFIGVHEMIDPQVELVRGYADEAAERI 72 V L LS + L+ L HW V GP+F +HE + + D AER+ Sbjct: 9 NQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERL 68 Query: 73 AALGKSPLGTPGAIINDRTWDDYSVNRDTVQAHLAALDLVYVGVIEDTRKSIERIGE-LD 131 A+G P+ T + D + A ++ + +++ I E D Sbjct: 69 LAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQ-ISSESKFVIGLAEENQD 127 Query: 132 PVSEDMLIGHAAELEKFQWFVRAHL 156 + D+ +G E+EK W + ++L Sbjct: 128 NATADLFVGLIEEVEKQVWMLSSYL 152
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 42.6 bits (100), Expect = 2e-06 Identities = 27/173 (15%), Positives = 65/173 (37%), Gaps = 6/173 (3%) Query: 27 VLALVGTLNYVDRFLPGVLAEPIKQELALSDTAIGVINGFGFLIVYAVLGIVIARIADRG 86 +L+ LN + + V I + + +N F++ +++ V +++D+ Sbjct: 21 ILSFFSVLNEM---VLNVSLPDIANDFNKPPASTNWVNT-AFMLTFSIGTAVYGKLSDQL 76 Query: 87 VFGAVIAGCLTLWGAMTMLGGAVQSGLQ-LALTRVGVAVGEAGSSPAAHAYVARNFVPEK 145 ++ + + +++G S L + R G A VAR E Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN 136 Query: 146 RSAPLAVITMSIPLASAASLLGGGLLAESLGWRAAFVVMGGISVLLAPLVLWV 198 R +I + + GG++A + W ++ I+++ P ++ + Sbjct: 137 RGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIP-MITIITVPFLMKL 188 Score = 31.4 bits (71), Expect = 0.008 Identities = 27/136 (19%), Positives = 57/136 (41%), Gaps = 20/136 (14%) Query: 278 LGLLIVGRIADRLATRDPRWLLWIVVILITGLLPASALAFVVESQTLCVWLLALAYVIGT 337 +G + G+++D+L + L + I+I S + FV + L+ ++ G Sbjct: 64 IGTAVYGKLSDQLGIKR----LLLFGIIINCF--GSVIGFV--GHSFFSLLIMARFIQGA 115 Query: 338 ---AYLAPSIAAIQRLVLPEQRATASAIFLFFNATLGAVGPFLTGVISDALTAELGPQAL 394 A+ A + + R + E R A + A VGP + G+I+ + Sbjct: 116 GAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIA---------HYI 166 Query: 395 GRALLILVPTMQLVAI 410 + L+L+P + ++ + Sbjct: 167 HWSYLLLIPMITIITV 182
>INTIMIN#Intimin signature. Length = 939 Score = 30.8 bits (69), Expect = 0.007 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 5/36 (13%) Query: 175 SQITPEQLAEARQIADIVTVQSRYNVIDRSAQAVLE 210 QI P+ + E R ++ SRY+++ R+ +LE Sbjct: 417 QQIEPQYVNELRTLS-----GSRYDLVQRNNNIILE 447
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 116 bits (291), Expect = 1e-33 Identities = 75/253 (29%), Positives = 118/253 (46%), Gaps = 15/253 (5%) Query: 4 LSGRRALVTGGSRGIGAGIVRRLTADGAAVAFTFSASKAEADELLADVTAHGAKAVAIHA 63 + G+ A +TG ++GIG + R L + GA +A + + +++++ + A A A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIA-AVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 64 DVADPTQAAAAVDTAAAELGGMDIVVNNAGIAVKAPIEEFTQEQYDRLVAINIGGPFWTT 123 DV D E+G +DI+VN AG+ I + E+++ ++N G F + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 124 HSSLKHLGD--GGRIINIGSINADRVPVPELSVYAMTKGAVSSFTRGLARELGPRGITVN 181 S K++ D G I+ +GS N VP ++ YA +K A FT+ L EL I N Sbjct: 125 RSVSKYMMDRRSGSIVTVGS-NPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 182 NVQPGPINTDMN-----PDEGD------FAAALKNVTALGRYGQTSDVAAVVSFLAGPES 230 V PG TDM + G K L + + SD+A V FL ++ Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 231 SYVTGANLNVDGG 243 ++T NL VDGG Sbjct: 244 GHITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 46.5 bits (110), Expect = 7e-09 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 16/150 (10%) Query: 1 MKLFWQHGFDGVSISDVTAVTGVNRRSIYAEFGSKEKLFMRAAERYLAGPSGYVTDAL-- 58 ++LF Q G S+ ++ GV R +IY F K LF E + + Sbjct: 21 LRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAK 80 Query: 59 ----TRPTAREVAEAMVHGAAN-----LVSGAIPGCLTTVGEAPGLAELR----EAIVRR 105 RE+ ++ L+ I VGE + + + R Sbjct: 81 FPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDR 140 Query: 106 LAERFDAAVADGELF-GVDTVVLARWIVAV 134 + + + L + T A + Sbjct: 141 IEQTLKHCIEAKMLPADLMTRRAAIIMRGY 170
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.9 bits (194), Expect = 2e-19 Identities = 53/183 (28%), Positives = 75/183 (40%), Gaps = 4/183 (2%) Query: 6 FITGGTPGNFGMAFAETALEAGDRVALTSRRPQELDTWAQQYGDRVLV---VPLELTDAA 62 FITG G G A A T G +A P++L+ P ++ D+A Sbjct: 12 FITGAAQG-IGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 63 QVQRAVRDAEEHFGGIDVLVNNAGRGWYGSIEGMDESSLRAMFELNFFAVLSVTRAVLPG 122 + E G ID+LVN AG G I + + A F +N V + +R+V Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 123 MRARGNGWIVNVSSVAGLVSAPGFGFYSATKYAIEAITDALRDEVAAQGISVLTVEPGAF 182 M R +G IV V S V Y+++K A T L E+A I V PG+ Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 183 RTN 185 T+ Sbjct: 191 ETD 193
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 119 bits (298), Expect = 1e-34 Identities = 81/253 (32%), Positives = 125/253 (49%), Gaps = 11/253 (4%) Query: 4 LTGKTALVTGATSGIGLAGARALAEEGAYVFLVGRRQDALEDAVAGIGAE--HASAIRAD 61 + GK A +TGA GIG A AR LA +GA++ V + LE V+ + AE HA A AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 62 VTVQADLDRVAATIKATGRRLDVVFANAGINEFATLGNLTWEHHTTIFNTNVGGVIFAVQ 121 V A +D + A I+ +D++ AG+ + +L+ E F+ N GV A + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 122 AALPLLND--GASIILCGSNGDVKAAPGASVYAASKAAIRSLARSWAAELVDRGIRVNVV 179 + + D SI+ GSN + YA+SKAA + EL + IR N+V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 180 APGLTQTPGLADLFSEADDA-------LADLTSTVPMKRRARPEEIGSVVAFLASDGSSF 232 +PG T+T L+++ + A L + +P+K+ A+P +I V FL S + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 233 MTGAEVYVDGGVS 245 +T + VDGG + Sbjct: 246 ITMHNLCVDGGAT 258
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.1 bits (114), Expect = 4e-09 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 8/151 (5%) Query: 18 DQALDSAIDVFWRLGYEGASLAELTNAMGINRPSLYAVFGSKEELFIRALQRYGTTYHEH 77 LD A+ +F + G SL E+ A G+ R ++Y F K +LF + + E Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGEL 73 Query: 78 LGQLLSRPGAY---QVLESYLRATANAVRAGSAPGCLSIQGGLSCGPNNARIPRLLA--- 131 + ++ + E + + V + I + + Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNL 133 Query: 132 --EYRHSIEAAVADALARTEDAAGIDTAALA 160 E IE + + A + T A Sbjct: 134 CLESYDRIEQTLKHCIEAKMLPADLMTRRAA 164
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 28.0 bits (62), Expect = 0.042 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 6/36 (16%) Query: 43 ALKFGDDAPRVVFLHG------GGQNAHTWDTVIVG 72 A +FG+ PRV + HG + +T+D V+VG Sbjct: 273 AYRFGNVTPRVSYAHGFKGTVDSANHDNTYDQVVVG 308
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.010 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 3/154 (1%) Query: 73 GDAAPARSSGQSDAAGADEASEPEDSESEDADAADAADAADDADAADAADAADAAEEDAE 132 + + AD S P S +E+ D A A A + AE + Sbjct: 989 NQTVDTTNITTPNNIQADVPSVP--SNNEEIARVDEAPVPPPAPATPSETTETVAENSKQ 1046 Query: 133 EPGDADDAGEGATEIDAVDDAVVVEDLTGVEVELEVVTTAEREYTEPEPVTRETHSAAAV 192 E + + ATE A + V E + V+ + A+ E T ET A V Sbjct: 1047 ESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATV 1106 Query: 193 PDSSE-RAAASATQPPPYVSEQSEYQKRVAAVLQ 225 + + TQ P V+ Q ++ + +Q Sbjct: 1107 EKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQ 1140
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 34.2 bits (78), Expect = 0.002 Identities = 10/36 (27%), Positives = 11/36 (30%) Query: 604 MPESPPYAPADSEEEQSEEDEEAAAPPAPRPPAPAP 639 PP A E E + E P P AP Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVV 88 Score = 32.7 bits (74), Expect = 0.005 Identities = 10/38 (26%), Positives = 12/38 (31%) Query: 603 VMPESPPYAPADSEEEQSEEDEEAAAPPAPRPPAPAPA 640 V P A + + E P P PP AP Sbjct: 50 VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPV 87
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 61.7 bits (150), Expect = 7e-13 Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 15/168 (8%) Query: 12 VLVTGAAGYVGSHVVNRLIHDGYRVRAAVRSEGRADEVRNNVSAAGLAPERVEFAVADLA 71 LVTGAAG++G HV RL+ G++V D LA +F DLA Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 72 ADDGWSA--AAEGARYVIHVAS----PFPAENPENDDDVIIPARDGTVRVLAAARDAGCS 125 +G + A+ V + ENP D + G + +L R Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNL---TGFLNILEGCRHNKIQ 119 Query: 126 RVVLTSSFAAVGYSPKDGDEWSEDDWTN-PADENTAYVRSKAIAERAA 172 ++ SS + G + K +S DD + P + Y +K E A Sbjct: 120 HLLYASSSSVYGLNRK--MPFSTDDSVDHPV---SLYAATKKANELMA 162
>SECA#SecA protein signature. Length = 901 Score = 27.5 bits (61), Expect = 0.030 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 32/110 (29%) Query: 59 YLADR------VVYSRSGLTHQAGLLQRDGLITRDTSADDQRATVVRITAAGRARVADVL 112 YLA R ++ GLT G+ A +R A AD+ Sbjct: 134 YLAQRDAENNRPLFEFLGLTV--------GINLPGMPAPAKRE----------AYAADIT 175 Query: 113 PGHIQVVRELLFDSLSDRDVTLLGDVMTR-----VRDHVRSLPSRSARTP 157 G E FD L D + + R + D V S+ ARTP Sbjct: 176 YG---TNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTP 222
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 49.2 bits (117), Expect = 1e-09 Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 16/163 (9%) Query: 2 IIDAARAEFARHGLAGARIDRIARSARASKERLYAHFGDKEALFRQVVVTDTAEF----L 57 I+D A F++ G++ + IA++A ++ +Y HF DK LF ++ + L Sbjct: 16 ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELEL 75 Query: 58 GSVGVRPDAVAEFAGDIY----DLAVSRPEHLRMITWARLEGVALGEPEVDGR------- 106 P +I + V+ ++ + +GE V + Sbjct: 76 EYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCL 135 Query: 107 PIRERDTAAIAAAQAAGHIDDRWEPEQLLVLLFG-IGMAWAHW 148 +R + A + + +++ G I +W Sbjct: 136 ESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENW 178
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 3e-04 Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 20/149 (13%) Query: 22 GRAVVGKRAALSLIL--ITVLARG--HVLIEDLPGLGKTLTAKS---FAAALGLEFTRVQ 74 G +VG+ AA+ I + L + ++I G GK L A++ + F + Sbjct: 136 GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAIN 195 Query: 75 ---FTPDLLPADLLG------STIYDMQSGRFEFRRGPIFTNLLLGDEINRTPPKTQAAL 125 DL+ ++L G + +GRFE G L DEI P Q L Sbjct: 196 MAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEG----GTLFLDEIGDMPMDAQTRL 251 Query: 126 LEAMAERQVSIDGATHRLPDPFLVLATDN 154 L + + + + G + ++A N Sbjct: 252 LRVLQQGEYTTVGGRTPIRSDVRIVAATN 280
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 59.5 bits (144), Expect = 5e-11 Identities = 39/228 (17%), Positives = 90/228 (39%), Gaps = 26/228 (11%) Query: 188 IVLLILLAVFGSLAAAAMPLLLGICTVVVTMGLVFLLSMYTTMSVFVTSTVSMFGIAVAI 247 +V L++ ++ A +P + V V + F + S+ +T++MFG+ +AI Sbjct: 350 LVFLVMYLFLQNMRATLIPTI----AVPVVLLGTFAILAAFGYSI---NTLTMFGMVLAI 402 Query: 248 ----DYSLFILMRFREELRAGRE-PEDAADAAMATSGLAVVLSGLTVIASVTGIYLINT- 301 D ++ ++ + + P++A + +M+ A+V + + A + Sbjct: 403 GLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGS 462 Query: 302 --PVLQSMATGAILAVAVAVLTSTTLTPAVLATFGRRAAKRSS-----YLHWGRGVEATQ 354 + + + + A+A++VL + LTPA+ AT + + + W Sbjct: 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHS 522 Query: 355 SKFWSRWTGWVMRRPWLSALAAAAVLLTFAAPAFSMLLGNSMQRQFEP 402 ++ G ++ L A ++ A ++L + F P Sbjct: 523 VNHYTNSVGKILGSTGRYLLIYALIV------AGMVVLFLRLPSSFLP 564 Score = 51.4 bits (123), Expect = 2e-08 Identities = 32/164 (19%), Positives = 74/164 (45%), Gaps = 19/164 (11%) Query: 538 ALIAFVMLLISIRSVFLAFKGVLMTVLSVAAAYGSLVVVFQWGWLSDLGFKQIESLDSTI 597 ++ F+++ + +++ + L+ ++V +V++ + L+ G+ +T+ Sbjct: 348 IMLVFLVMYLFLQN----MRATLIPTIAV-----PVVLLGTFAILAAFGYSI-----NTL 393 Query: 598 PPLVLALTFGLSMDYEIFLLTRIRERFLQTG-NTRDAVAYGVSTSARTITSAALIMIAVF 656 + L GL +D I ++ + ++ ++A +S + A+++ AVF Sbjct: 394 TMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVF 453 Query: 657 IGFAFAGM---PLVAQLGVACAVAIAVDATIVRLVLVPALMAMF 697 I AF G + Q + A+A+ + +V L+L PAL A Sbjct: 454 IPMAFFGGSTGAIYRQFSITIVSAMAL-SVLVALILTPALCATL 496
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 27.2 bits (60), Expect = 0.025 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Query: 50 SADFSGVASGVSAASSAYLFTHPDVNAFFTGLHGAPRAQLEAE---IAEYFAN 99 S + V+SG+SAA++ L P V+A + G LEA + E+ A+ Sbjct: 372 STVLASVSSGISAAATTSLVGAP-VSALVGAVTGIISGILEASKQAMFEHVAS 423
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.4 bits (240), Expect = 2e-25 Identities = 38/114 (33%), Positives = 63/114 (55%) Query: 1 MVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAVVT 60 + DDD +RT + + L +G+DVR+ + R +++ D +V DV MP+ + ++ Sbjct: 8 VADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLP 67 Query: 61 ALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRR 114 ++ D+P+ V+SA++T I E GA DYL KPFDL EL+ + L Sbjct: 68 RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 38.7 bits (90), Expect = 3e-05 Identities = 32/176 (18%), Positives = 65/176 (36%), Gaps = 31/176 (17%) Query: 273 RVEGIITALGQLASGELAQAEDRDVIDVTDMLDRVAR----ENMRVRRDVQIDIEVADDL 328 + ++T+L +L L + R + + D L V +++ +Q + ++ + Sbjct: 192 KAREMLTSLSELMRYSLRYSNARQ-VSLADELTVVDSYLQLASIQFEDRLQFENQINPAI 250 Query: 329 GTVMGWPSGLRLAVDNLVRNAVTHGGATR-----IVLAAHRTDIGVTIVVDDNGRGLPVE 383 V P + V LV N + HG A I+L + + VT+ V++ G Sbjct: 251 MDVQ-VPP---MLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN 306 Query: 384 EHQTVLGRFSRGSNAVPGGSGLGLALVAQQ-ATLHGGAIALT-DSPLGGLRATLTV 437 + +G GL V ++ L+G + G + A + + Sbjct: 307 TKE---------------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 38.2 bits (88), Expect = 4e-05 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 5/48 (10%) Query: 348 DIDPDSAPTAPNSSPSDEQAPAQFSPDPEAFHPPDENPVTQPD-KPDP 394 D+ P SA APN+ P E +PA+ +P P+ENP T+P+ +PDP Sbjct: 314 DLTPGSA-EAPNAQPLPEVSPAE---NPANNPAPNENPGTRPNPEPDP 357
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 71.8 bits (176), Expect = 9e-15 Identities = 41/261 (15%), Positives = 100/261 (38%), Gaps = 39/261 (14%) Query: 184 EDQKRAEVAAIPLVAVVLFFVFGGVIAAALPAIIGGLTIAGALGIMRIFAEFMPVHFFAQ 243 + + AI LV +V++ + A +P I + + G I+ F ++ Sbjct: 338 HEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFG-------YSI 390 Query: 244 PVVTLMGL----GIAIDYGLFMVSRF-REEIAEGYDTEAAVRRTVMTSGRTVMFSAVILV 298 +T+ G+ G+ +D + +V R + + + A +++ ++ A++L Sbjct: 391 NTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLS 450 Query: 299 ASSAPLLLFP--QG-FLKSITYAIIASVMLAAILSVTVLPAAFAILGRNVDALGVRTLLR 355 A P+ F G + + I++++ L+ ++++ + PA A TLL+ Sbjct: 451 AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCA------------TLLK 498 Query: 356 VPFLRNWKPMRLWLEWLAEKTQKTKTRAEVEKGFWGRLVNVVMKRPIAFAAPILIVMILL 415 + + + W + + V ++ + L++ L+ Sbjct: 499 PVSAEHHENKGGFFGWFNTTFDHSVNH-------YTNSVGKILGSTGRY----LLIYALI 547 Query: 416 VIPLGQLALGGISEKYLPPDN 436 V + L L + +LP ++ Sbjct: 548 VAGMVVLFL-RLPSSFLPEED 567 Score = 46.0 bits (109), Expect = 9e-07 Identities = 26/156 (16%), Positives = 62/156 (39%), Gaps = 7/156 (4%) Query: 192 AAIPLVAVVLFFVFGGVIAAALPAIIGGLTIAGALGIMRIFAEFMPVHFFAQPVVTLMGL 251 + +V + L ++ ++ L I G L +F + V+F V L + Sbjct: 878 ISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFM---VGLLTTI 934 Query: 252 GIAIDYGLFMVSRFRE-EIAEGYDTEAAVRRTVMTSGRTVMFSAVILVASSAPLLLFP-- 308 G++ + +V ++ EG A V R ++ +++ + PL + Sbjct: 935 GLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGA 994 Query: 309 -QGFLKSITYAIIASVMLAAILSVTVLPAAFAILGR 343 G ++ ++ ++ A +L++ +P F ++ R Sbjct: 995 GSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 25.6 bits (56), Expect = 0.034 Identities = 13/41 (31%), Positives = 18/41 (43%) Query: 46 LAAGAAFFGSYAADTLGWPRYLLGAAALAFLACGAVVIAKN 86 + F G L R++ GA A AF A VV+A+ Sbjct: 91 FGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARY 131
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 83.2 bits (205), Expect = 5e-21 Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 1/189 (0%) Query: 3 KSVFITGAATGIGRATALLFAQRGYLVGAYDIDEAGLQVLRSDIAAVGGRSVVGHLDVTD 62 K FITGAA GIG A A A +G + A D + L+ + S + A + DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 63 ADEVAQRLGEFHEAAGGRLDVLVNNAGLLNAGRFEDIPLTVHHREIEVNVKGVVNGLHAA 122 + + + E G +D+LVN AG+L G + VN GV N + Sbjct: 69 SAAIDEITARI-EREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 123 FPFLKSTPGAVVVNLASASAIYGQAELANYSATKFFVRAITEALNLEWGRYGIRVIDMWP 182 ++ +V + S A + +A Y+++K T+ L LE Y IR + P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 183 LYVNTAMTR 191 T M Sbjct: 188 GSTETDMQW 196
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 41.6 bits (97), Expect = 3e-05 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 11/164 (6%) Query: 1183 LVTGGLGSIGLEIAGYLASHGARHLVLTSRRAPGDAAQQRIDALGAQHGCEVRVVTADVA 1242 +TG IG +A LAS GA + + + A ADV Sbjct: 12 FITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA----EAFPADVR 67 Query: 1243 DAHAVARLLAVVRAELPPLAGIVHAAGEIGTTPLSTLDDAEVDRVFAGKVWGAWHLSEAA 1302 D+ A+ + A + E+ P+ +V+ AG + + +L D E + F+ G ++ S + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 1303 L----DTSAGTLDFFLCTSSIASVWGGFGQTAYGAANAFLDGLA 1342 D +G++ + S + AY ++ A Sbjct: 128 SKYMMDRRSGSI---VTVGSNPAGVPRTSMAAYASSKAAAVMFT 168 Score = 39.3 bits (91), Expect = 2e-04 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 8/123 (6%) Query: 3316 LITGGLGAIGLHTAAYLAQLGAGDIVLTSRRAADADTQ-QTIDDITERFKCRI-HVFAAD 3373 ITG IG A LA GA A D + + + + + R F AD Sbjct: 12 FITGAAQGIGEAVARTLASQGA------HIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 3374 VGDEPQVMTLLDRIRAELPPLAGVAHFAGVLDDALLSQQSLDRFRMTLASKAFGAYHLDR 3433 V D + + RI E+ P+ + + AGVL L+ S + + T + + G ++ R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 3434 WTA 3436 + Sbjct: 126 SVS 128
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 57.9 bits (140), Expect = 2e-10 Identities = 61/391 (15%), Positives = 125/391 (31%), Gaps = 55/391 (14%) Query: 196 AVLVLAVLLLVYRSIVTMLLPLVTIGSSVLIAQGLVAAYSHLTGAGVS-NQSIVFLSAIL 254 +LV V+ L +++ L+P + + +L ++AA+ G S N +F + Sbjct: 348 IMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAF------GYSINTLTMFGMVLA 401 Query: 255 AGAGTDYAVFLISRYHDYLRS-GAGYDDAVKAAMMSIGKVITASALTVGITFLVMSFAK- 312 G D A+ ++ + +A + +M I + A+ + F+ M+F Sbjct: 402 IGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGG 461 Query: 313 -MG-VFSTVGVSAGIGIGVAYLAGVTLLPAILV-LVGPR------------GWVKPRREL 357 G ++ ++ + ++ L + L PA+ L+ P GW + Sbjct: 462 STGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDH 521 Query: 358 TARFWRRSGIRIVRRPVPHLVASVLVLILLAGAA---GFARFNYDDRKAVSASAPSSVGY 414 + + S +I+ +L+ L++ + + +D+ G Sbjct: 522 SVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAG- 580 Query: 415 VALERHFPISQSIPQYILVQ----------------SPRDLRSPQALADLEQMASRIAQL 458 ER + + Y L S + + A L+ R Sbjct: 581 ATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDE 640 Query: 459 PDVS-LVSGITRPLGEVPPEFRATFQAGIV---GDRLADGSAQIGERTDDLDTLTAGADT 514 ++ LG++ F F + G I + D LT + Sbjct: 641 NSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQ 700 Query: 515 LA-------DSLGDVRAQVNQIAPSLQGLID 538 L SL VR + + +D Sbjct: 701 LLGMAAQHPASLVSVRPNGLEDTAQFKLEVD 731
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 42.9 bits (101), Expect = 4e-06 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 30/184 (16%) Query: 550 AGRMLEGETAKLLRMESEL--GKRVIGQTKAVQAVSDAVRRSRAGVADPNRPTGSFMFLG 607 GR L + ++E + G ++G++ A+Q + + R + + M G Sbjct: 115 IGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR----LMQTDLTL---MITG 167 Query: 608 PTGVGKTELAKALAEFLFDDERAMVRIDMSEYGEKHSVARLVGAPPGYVGYDQGGQLTEA 667 +G GK +A+AL ++ V I+M+ + L G + G T A Sbjct: 168 ESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKGAFTGA 219 Query: 668 VRRRPYTV-------ILFDEIEKAHPDVFDVLLQVLDEG---RLTDGQGRTVDFRNTILI 717 R + DEI D LL+VL +G + D R ++ Sbjct: 220 QTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IV 276 Query: 718 LTSN 721 +N Sbjct: 277 AATN 280
>PF05844#YopD protein Length = 295 Score = 29.6 bits (66), Expect = 0.012 Identities = 12/33 (36%), Positives = 15/33 (45%) Query: 212 ARRSGSPSRPLTPAPAGRSTELPPGQAAGQPRP 244 A ++ PS P+ P AGRS P A P Sbjct: 10 ATQAAIPSEPIAPGAAGRSVGTPQAAAELPQVP 42
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 53.5 bits (128), Expect = 1e-10 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 5/185 (2%) Query: 5 VALITGPTSGLGEGFARRYAVDGYDLVLVARDADRLNTLAAELHDEMGAEVEVICADLSD 64 +A ITG G+GE AR A G + V + ++L + + L E E AD+ D Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE-ARHAEAFPADVRD 68 Query: 65 ATDRAVVADRLR---DGVQVLVNNAGFGTAGEFWSADYALLQSQLDVNVTAVMQLTHAAL 121 + + R+ + +LVN AG G S ++ VN T V + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 122 PSMLAAGAGTVLNVASVAGLLPGRG-STYSASKAWVVSFSEGLANALGGTGVGVHALCPG 180 M+ +G+++ V S +P + Y++SKA V F++ L L + + + PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 181 FVHTE 185 T+ Sbjct: 189 STETD 193
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 158 bits (400), Expect = 9e-45 Identities = 92/406 (22%), Positives = 173/406 (42%), Gaps = 21/406 (5%) Query: 15 VLLIGIDGTVLALATPFISADLGATGTQLLWIGDIYSFVLAALLISMGSLGDRIGHKKLL 74 ++ VL ++ P I+ D W+ + + G L D++G K+LL Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 75 LYGATAFAMISAITAYASSP-QMLIGTRALLGMAGATLAPATLALIRGLFPDQRERSIAV 133 L+G S I S +LI R + G AGA PA + ++ + + R A Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQG-AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 134 GIWASAFSAGAALGPVVGGVLLEHFWWGSVFLINIPVMVILVVGGLLLLPEHRNPDPGPW 193 G+ S + G +GP +GG++ + W +L+ IP++ I+ V L+ L + G + Sbjct: 142 GLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHF 199 Query: 194 DLPSVGLSMLGMLGVVYAIKEGFTGLVHGLGGDVVVAAAIGVGSLTLFVRRQLRLPQPLI 253 D+ + L +G++ + + + V S +FV+ ++ P + Sbjct: 200 DIKGIILMSVGIVFFMLFTTSYSISFL-----------IVSVLSFLIFVKHIRKVTDPFV 248 Query: 254 DVRLFRNPRFSGVVAANLLSVLGLSGLVFFLSQYFQLVHGYGPLKAGLAEL-PAAVTATV 312 D L +N F V + ++G V + + VH + G + P ++ + Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308 Query: 313 FGVLAGVAVRYVSHRAALTTGLALVGVAMGALMTSLIVFTPMTPYLPLGISLFVVGVGLG 372 FG + G+ V L G+ +++ L S ++ T T + I +FV+G GL Sbjct: 309 FGYIGGILVDRRGPLYVLNIGVTF--LSVSFLTASFLLET--TSWFMTIIIVFVLG-GLS 363 Query: 373 LAFTVASDVILASVPKERAGAAAAVSETAYELGMALGIATLGSIIT 418 TV S ++ +S+ ++ AGA ++ L GIA +G +++ Sbjct: 364 FTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.0 bits (132), Expect = 9e-12 Identities = 27/192 (14%), Positives = 57/192 (29%), Gaps = 17/192 (8%) Query: 2 APTRDQLLRSAADFLGRRP--NATQDEIATAVGVSRATLHRHFSGRVALMAALEELAIAE 59 TR +L A ++ + + EIA A GV+R ++ HF + L + + EL+ + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 60 MRQVLEAV-----RLSEGSATDALRRLVTACEPISPYLALLYSQSQELDLDTTLEIWDEV 114 + ++ + L ++ + L+ + + + + + Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 115 DTA--------ITELFLRGQRDGEFRPDLTAAWLTEAFYALIGG--TAWSIRAGRAAARD 164 I + DL I G W + Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKK 189 Query: 165 FDRLIIDLLLNG 176 R + +LL Sbjct: 190 EARDYVAILLEM 201
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 133 bits (335), Expect = 3e-36 Identities = 85/405 (20%), Positives = 163/405 (40%), Gaps = 16/405 (3%) Query: 23 LSAVFLFEMLDNSILSVALPTIGRDLHASTTALQWVTGSYAVVFGGLMLAFGAVADHVGR 82 L + F +L+ +L+V+LP I D + + WV ++ + F +G ++D +G Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 83 RRVMLVGLTLLALASLATAFVVT-AEQLIAVRVAMGIAAAMTTPGSMALAFRLFTDDGLR 141 +R++L G+ + S+ + LI R G AA M + R + R Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN-R 137 Query: 142 VRAITVISTVGLIGLAIGPPVGGLVVAIAPWQILLVVNVPIAVLAIIGVRTGIAADRAED 201 +A +I ++ +G +GP +GG++ W LL+ I ++ II V + + E Sbjct: 138 GKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLL----IPMITIITVPFLMKLLKKEV 193 Query: 202 LHRDPLDLAGAVLGTAAIVLTLVAPTLFVTEGAASWAAWTTTSAAVASFALFILRQRSAR 261 + D+ G +L + IV + LF T + + +V SF +F+ R Sbjct: 194 RIKGHFDIKGIILMSVGIVFFM----LFTTS-----YSISFLIVSVLSFLIFVKHIRKVT 244 Query: 262 HPLISLDLVSRPLVSSGLAFKAAAGMAIAGLGYLVTLQLQLDWGWSPALA-AIGMLPQVV 320 P + L G+ +AG +V ++ S A ++ + P + Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTM 304 Query: 321 VLVAGSVFVGPFVDWVGPGRAAWLSASAVVAGLAVYGSLGRIGYPWVALALVLVAAGMRV 380 ++ G VD GP + + + L ++ + +V V G+ Sbjct: 305 SVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF 364 Query: 381 VGVVAALTVLRGLPENRTTIGAALTDTATEIASGVGIAVGGTILA 425 V + V L + G +L + + ++ G GIA+ G +L+ Sbjct: 365 TKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 35.9 bits (82), Expect = 5e-04 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 16/91 (17%) Query: 126 KDGLIHRDIKPSNILI---TGRDFVYLIDFGLARSAGES--GLTTAGSTLGTLAYMAPER 180 K G++H DIKP N++ +G V ID GL +GE G T ++ APE Sbjct: 263 KAGVVHNDIKPGNVVFDRASGEPVV--IDLGLHSRSGEQPKGFTE--------SFKAPEL 312 Query: 181 FEGG-DVDARSDIYALTCVLYECLTGSRPYP 210 G +SD++ + L C+ G P Sbjct: 313 GVGNLGASEKSDVFLVVSTLLHCIEGFEKNP 343
>PERTACTIN#Pertactin signature. Length = 922 Score = 27.4 bits (60), Expect = 0.006 Identities = 20/67 (29%), Positives = 23/67 (34%) Query: 3 ALPPNPDPASTPGLESGGGVSPGETPPDSEQTSNSMPDPTAGRNLTPRAVIAFVAIGLFV 62 A P P P P P P Q P P AGR L+ A A G+ + Sbjct: 574 APQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAAANAAVNTGGVGL 633 Query: 63 ALFLASA 69 A L A Sbjct: 634 ASTLWYA 640
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 59.1 bits (143), Expect = 5e-11 Identities = 52/234 (22%), Positives = 86/234 (36%), Gaps = 29/234 (12%) Query: 468 RTAIIQVIPETGPNDTATADLVQRIRADRDAIEADTGATFLVGGNTASNIDTS-DKLATA 526 A + + TG N TA ++ A+ G L +T + S ++ Sbjct: 285 PAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ-GMKVLYPYDTTPFVQLSIHEVVKT 343 Query: 527 L--PIFLVVVVGLAFILLTIAFRAALVPITSIVGFLLSVFAALGAQVAVFQWGWGASLLG 584 L I LV +V F+ RA L+P ++ LL FA L A Sbjct: 344 LFEAIMLVFLVMYLFLQ---NMRATLIPTIAVPVVLLGTFAILAAF-------------- 386 Query: 585 VTPGETISFLPIIALAIIFGLSSDYEVFVVSRIKEELATTGDAT-AAVRNGVGLSARVVT 643 G +I+ L + + + GL D + VV ++ + A + + Sbjct: 387 ---GYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALV 443 Query: 644 AAALIMFGVF--IAFLAG-GDPIIKSVGLTLAFGVFLDAFVVRLTLIPAVMAML 694 A+++ VF +AF G I + +T+ + L V L L PA+ A L Sbjct: 444 GIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVA-LILTPALCATL 496 Score = 58.3 bits (141), Expect = 8e-11 Identities = 31/152 (20%), Positives = 67/152 (44%), Gaps = 9/152 (5%) Query: 179 IIGISVAFVILLITFGAIVAAGLPILTAAIGVGIGALGIFVVAAFVDMPTASLSL-ALML 237 I + F+++ + + A +P + V + LG F + A +L++ ++L Sbjct: 345 FEAIMLVFLVMYLFLQNMRATLIPTIA----VPVVLLGTFAILAAFGYSINTLTMFGMVL 400 Query: 238 GLSCGIDYALFIL-NRYRNNLLLLMPRQEAAGLAVGTAGGAVVFAALTVIIALCGLAVVG 296 + +D A+ ++ N R + +P +EA ++ GA+V A+ + +A G Sbjct: 401 AIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460 Query: 297 I---PFLTYMGVAAAVSVLIAMLIALTLLPAL 325 + ++ +++L+AL L PAL Sbjct: 461 GSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 38.7 bits (90), Expect = 1e-04 Identities = 40/275 (14%), Positives = 88/275 (32%), Gaps = 53/275 (19%) Query: 428 PLLVVADVSGATNPAAAQMIASNISREDG----VVAAAPAGGDSRTAIIQVIPETGPNDT 483 P + R +G + A G S + ++ Sbjct: 799 PFSAFTTSHWVYGS-------PRLERYNGLPSMEIQGEAAPGTSSGDAMALM-------- 843 Query: 484 ATADLVQRIRADRDAIEADTGATFLVGGNTASNIDTSDKLATALPIFLVVVVGLAFILLT 543 + A + G + G + + ++ + I VVV F+ L Sbjct: 844 -----------ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVV----FLCLA 888 Query: 544 IAFRAALVPITSIVGFLLSVFAALGAQVAVFQWGWGASLLGVTPGETISFLPIIALAIIF 603 + + +P++ ++ L + L A + ++ L Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLF--------------NQKNDVYFMVGLLTTI 934 Query: 604 GLSSDYEVFVVSRIKEELATTG-DATAAVRNGVGLSAR--VVTAAALIMFGVFIAFLAG- 659 GLS+ + +V K+ + G A V + R ++T+ A I+ + +A G Sbjct: 935 GLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGA 994 Query: 660 GDPIIKSVGLTLAFGVFLDAFVVRLTLIPAVMAML 694 G +VG+ + G+ A ++ + +P ++ Sbjct: 995 GSGAQNAVGIGVMGGMVS-ATLLAIFFVPVFFVVI 1028
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.4 bits (81), Expect = 0.001 Identities = 33/194 (17%), Positives = 65/194 (33%), Gaps = 24/194 (12%) Query: 40 SAGTSASSSAQGPA----SADRTKPVKVKTAKTETAKPDR-----AESDKSESETAE--S 88 + T + A P+ + + + + A P AE+ K ES+T E Sbjct: 996 NITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNE 1055 Query: 89 DNASKADAESADPAGKDRNRPADDTGGSDDASGADDDASDEGEAPAAEVTEHQAGEEEQP 148 +A++ A++ + A + ++ +T + S+ E E E E+E+ Sbjct: 1056 QDATETTAQNREVAKEAKSNVKANT----QTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Query: 149 A-------APEQPVAEEQPPAAVEPSDAEVQAPVETTTTESTVTKALAATDGL--ATGEP 199 A V + P + + QA + K + T +P Sbjct: 1112 AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 200 AADSGEPVVPALTS 213 A ++ V +T Sbjct: 1172 AKETSSNVEQPVTE 1185
>PERTACTIN#Pertactin signature. Length = 922 Score = 31.6 bits (71), Expect = 0.008 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 280 IPSEAPVAPVAPPQVPGPVAPPPPAPPSTRQFTSAPQVPMAPPSVRPPRRFGRGQLVLGA 339 + ++AP AP PQ PGP P P P P P P + G+ + A Sbjct: 563 VGAKAPPAPKPAPQ-PGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAA 621 Query: 340 VTAAMLAVAVILAMVLVFSGGDS 362 AA+ V LA L ++ ++ Sbjct: 622 ANAAVNTGGVGLASTLWYAESNA 644
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.0 bits (83), Expect = 3e-04 Identities = 64/337 (18%), Positives = 114/337 (33%), Gaps = 45/337 (13%) Query: 41 VYTVFATYFEGQFFAESEKNSTVYVYAIFAIT-FVMRPVGSWFFGRYADRRGRRAALTFS 99 + V + + A++A+ F PV G +DR GRR L S Sbjct: 24 IMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVL----GALSDRFGRRPVLLVS 79 Query: 100 VSLMALCSAVIALVPSQATIGIAAPIILVLARLVQGFATGGEYGTSATYMSEAATRERR- 158 ++ A+ A++A P +L + R+V G TG + Y+++ + R Sbjct: 80 LAGAAVDYAIMATAPFLW--------VLYIGRIVAGI-TGATGAVAGAYIADITDGDERA 130 Query: 159 ---GFFSSFQYVTLVGGHVLAQFTLLILQSFLTDDQMRDFGWRIAF----AIGGVAAIVV 211 GF S+ +V G VL M F F A+ G+ + Sbjct: 131 RHFGFMSACFGFGMVAGPVLGGL-------------MGGFSPHAPFFAAAALNGLNFLTG 177 Query: 212 FWLRRTMDESLSEEVIEAARSGEDKGAG-SMRELFTTYWRPLLLCFLITMGGTVAFYTYS 270 +L + ES E R + A T + + F++ + G V + Sbjct: 178 CFL---LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWV 234 Query: 271 VNAPTIVKSTYDDAMTATWINLIGLIFLMLLQPVGGMISDKVGRKPMLLFFGVGGLFYTY 330 + + +D + G++ + + G ++ ++G + L G+ Y Sbjct: 235 IF--GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGER-RALMLGMIADGTGY 291 Query: 331 ILITFLPETQSPLASFALVAGGYII---LTGYTSINA 364 IL+ F L+A G I L S Sbjct: 292 ILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQV 328
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 49.5 bits (118), Expect = 7e-08 Identities = 43/247 (17%), Positives = 92/247 (37%), Gaps = 17/247 (6%) Query: 137 AQSNDNKAAYVQVYIAGDQGETLANESVEAVRTLVADTPA--PDGVQAYVTGPAATTTDQ 194 A+ N AA + + +A A ++ +A++ +A+ P G++ Sbjct: 279 ARINGKPAAGLGIKLATGAN---ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQL 335 Query: 195 NAVGDASMRTIEMVTFAVIVVMLLFVYRSAVTTMVVTGMMFLGLMGARGIVSFLGYHGVF 254 + ++T+ V +VM LF ++ T++ T + + L+G I++ G + Sbjct: 336 SI--HEVVKTLFEAIMLVFLVMYLF-LQNMRATLIPTIAVPVVLLGTFAILAAFG----Y 388 Query: 255 GLTTFATNMVVTLAIAAATDYGIFLVGRYQEARRNGED--RESAYYTMFHGTAHVILASG 312 + T T + LAI D I +V + + +E+ +M ++ + Sbjct: 389 SINTL-TMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAM 447 Query: 313 LTIAGATACLHFTRL--PYFQTMGLPLAVGMTFVVAAALTLGPAVISVVTRFGKVLEPKR 370 + A F ++ + + M V AL L PA+ + + + + Sbjct: 448 VLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEN 507 Query: 371 MARSRGW 377 GW Sbjct: 508 KGGFFGW 514 Score = 36.4 bits (84), Expect = 6e-04 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 15/158 (9%) Query: 781 ALILIFIIMVILTRAIVASAVIVGTVVLSLGTSFGLSVLLWQHIVGIPLHWMVLPMSVIV 840 A++L+F++M + + + A+ + V + L +F + I + + MVL + ++V Sbjct: 347 AIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLV 406 Query: 841 LLAVGADYNLLLVSRMKEELGAGLHTGIIRSMAGTGSVVTAAGMVFAFTMISMTVSDMIV 900 A+ N V R+ E +SM+ + A + ++ + Sbjct: 407 DDAIVVVEN---VERVMMEDKLPPKEATEKSMSQIQGALVGI----AMVLSAVFIPMAFF 459 Query: 901 IGQVGT-------TIGLGLLFDTFVVRSFMTPSIAALL 931 G G TI + V TP++ A L Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALIL-TPALCATL 496
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.012 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 30 VLGLLGPNGSGKSSLLRLLAGLD 52 + L G G GKS+L+ L GLD Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.6 bits (131), Expect = 2e-11 Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 4/142 (2%) Query: 8 PSLRERKKARTRLAIRQEAFRLFDQQGYANTTIDQIAHAADVSPRTLYRYFGVKEALLVS 67 +++ TR I A RLF QQG ++T++ +IA AA V+ +Y +F K L Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 68 --DDHTTPIVEAFAN--APRELSIVAAYRHALTEVFGALTPEERENSIAGQRMLYQVPEA 123 + + I E A ++ R L V + EER + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 124 RGLIYAEYIRLIDLLTAALARR 145 + + R + L + + Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQ 143
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.1 bits (127), Expect = 6e-11 Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 7/159 (4%) Query: 22 KQRLFKALGAVMGVKGYSSTTVDDLIKNAGVSRATFYQHFESKQDCFMAGYARMQGHIID 81 +Q + + +G SST++ ++ K AGV+R Y HF+ K D F + + +I + Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 82 AIGR--APTTGTPMQRFSTMLDQYLGFMSMDPPTARLYLV---EVYSAGPEAMTRRFE-- 134 A G P+ +L L + L + + G A+ ++ + Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 135 LQQEFVAGVAKLFNARSQADRFACKALVAAISSLVIGAL 173 L E + + +A + + ++ G + Sbjct: 133 LCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 36.7 bits (85), Expect = 7e-05 Identities = 28/127 (22%), Positives = 35/127 (27%), Gaps = 29/127 (22%) Query: 6 VLVTGATGKTGTHVVSGLRRLGHAV---------------RAATRRPAAGDGDAVPFDWA 50 LVTGA G G HV L GH V +A A D A Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 51 DHTTFPAALADV---RAIYLVAPAGV----ADPLPLVRP-------FLELAAAGGVRRVV 96 D A R V +P LE ++ ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLL 122 Query: 97 QLSSSAV 103 SSS+V Sbjct: 123 YASSSSV 129
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 57.7 bits (139), Expect = 2e-12 Identities = 24/177 (13%), Positives = 55/177 (31%), Gaps = 15/177 (8%) Query: 1 MAEVTPSRSARAALRSDVTDGILGAVLDELAAVGYGKLSMDGVARRARAGKAALYRRWPS 60 MA T + IL L + G S+ +A+ A + A+Y + Sbjct: 1 MARKTKQEAQETRQH------ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKD 54 Query: 61 KQDMVLDAV-----TSISLPAGKSTSSGALPADI--ADLVHGVNDWLSDPLMSRILPDLL 113 K D+ + L P + L+H + +++ ++ + Sbjct: 55 KSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIF 114 Query: 114 AEAKRNTDLA--AALTARIAVSRREYGHLVIGAAIDRGELSPDVDVEYALDLVAAPI 168 + + ++A + + + + I+ L D+ A ++ I Sbjct: 115 HKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 34.6 bits (79), Expect = 1e-04 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 12/164 (7%) Query: 9 DDDQHRVVAAVHDELARWGIDRFDIGAMAHRHGLDADAILRRWRDPELLILDALA----- 63 + + ++ ++ G+ +G +A G+ AI ++D L + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 64 --QRPGDTAPPDTGSLRSDL-FYLAVRMAAMVTSESGRKLHGGHLISDIRYGGVEIRQSA 120 + + G S L L + + VT E R L G + + Q A Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 121 WRARA----ATLAVVFDRARERGEMRDDVDYRTVLELLFAPINM 160 R + E + D+ R ++ I+ Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISG 173
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.5 bits (100), Expect = 3e-06 Identities = 42/260 (16%), Positives = 87/260 (33%), Gaps = 9/260 (3%) Query: 65 MLLALPSGVLADLIDRRRLLIATQGAMAAGVGLLASLTGAGLTTPAV-LLMLLFVIGCGQ 123 A G L+D RR +L+ + A ++A T P + +L + ++ Sbjct: 57 FACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMA-------TAPFLWVLYIGRIVAGIT 109 Query: 124 ALTAPAWQAIQPDLVPAEQIPAAAALGSMSMNGARAIGPAIAGALVSLTGPTLVFALNAV 183 T A D+ ++ S GP + G + + FA A+ Sbjct: 110 GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAAL 169 Query: 184 SFVGIVCVLIWWRRPAVEDNYPPERALAALNAGGRFIRSSPIVRRILLRTALFIAPASAL 243 + + + + P R A R+ R +V ++ + Sbjct: 170 NGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVP 229 Query: 244 WGLLPVIAKDQLGLSSSGYGLLLGALGV-GAVCGAFLLSRLRSRFGQNTLLTVGAAGFAV 302 L + +D+ ++ G+ L A G+ ++ A + + +R G+ L +G Sbjct: 230 AALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 303 ATAVLALVHSFGIVLVALVI 322 +LA + +V+ Sbjct: 290 GYILLAFATRGWMAFPIMVL 309 Score = 40.6 bits (95), Expect = 1e-05 Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 4/155 (2%) Query: 247 LPVIAKDQL--GLSSSGYGLLLGALGVGAVCGAFLLSRLRSRFGQNTLLTVGAAGFAVAT 304 LP + +D + ++ YG+LL + A +L L RFG+ +L V AG AV Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDY 87 Query: 305 AVLALVHSFGIVLVALVIGGAAWLLTLSTLNAAMQLSLPAWVRARGLSVYQLVFMGGQAL 364 A++A ++ + ++ G T + A + RAR F G Sbjct: 88 AIMATAPFLWVLYIGRIVAGITG-ATGAVAGAYIADITDGDERARHFGFMSACFGFGMVA 146 Query: 365 GSLLWGLVAGATTSVTSLLVSMALLLVCAVSSLFW 399 G +L GL G + + AL + ++ F Sbjct: 147 GPVLGGL-MGGFSPHAPFFAAAALNGLNFLTGCFL 180 Score = 29.4 bits (66), Expect = 0.032 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 6/108 (5%) Query: 68 ALPSGVLADLIDRRRLLIATQGAMAAGVGLLASLTGAGLTTPAVLLMLLFVIGCGQALTA 127 A+ +G +A + RR L+ A G LLA T + P ++L+ IG Sbjct: 264 AMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIG------M 317 Query: 128 PAWQAIQPDLVPAEQIPAAAALGSMSMNGARAIGPAIAGALVSLTGPT 175 PA QA+ V E+ + + +GP + A+ + + T Sbjct: 318 PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITT 365
>PF06580#Sensor histidine kinase Length = 349 Score = 31.4 bits (71), Expect = 0.006 Identities = 13/122 (10%), Positives = 40/122 (32%), Gaps = 37/122 (30%) Query: 231 RLIRRCAAVAQERYDAKDVTLDVRVPEGL-----PPLWADEQRLSQVLGNLLDNALRH-- 283 ++ +A +++ + + + ++ + PP+ ++ L++N ++H Sbjct: 223 TVVDSYLQLASIQFEDR-LQFENQINPAIMDVQVPPM---------LVQTLVENGIKHGI 272 Query: 284 --TASGDSVRVECHRDGDHLAIVVADSGDGIAAEHLPRVFERFYRADAARDRDHGGAGIG 341 G + ++ +D + + V ++G G G Sbjct: 273 AQLPQGGKILLKGTKDNGTVTLEVENTGSLAL------------------KNTKESTGTG 314 Query: 342 LA 343 L Sbjct: 315 LQ 316
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 6e-21 Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 19 RALVVDDEVPLAEVVASYLEREHFEAIVANNGVDAIAVARELDPDVVILDLGLPGIDGLE 78 LV DD+ + V+ L R ++ + +N D D+V+ D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 79 VCRQLRT-FSDAYVVMLTARDTEMDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRL 137 + +++ D V++++A++T M + GA DY+ KPF EL+ I L P+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 138 APTPAASAAHETAP 151 P+ + + P Sbjct: 125 RPSKLEDDSQDGMP 138
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 85.4 bits (211), Expect = 7e-23 Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 11/198 (5%) Query: 9 LSVDLIAQAALDLVRSTG--GFTMPGVARKLRVQPSSLYNHVSGRDAIVELLRERAMSE- 65 L+ + + AAL+L+ TG G T +A+KL ++ +LY HV + A+++ L ++ Sbjct: 4 LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARH 63 Query: 66 VQLPADDPDLPWRDVVAGIARSYRSSFARYPQLIPLLTEYAVNSPQALTMYNALAVTLRR 125 W+ + A S+R + RY + + Q T+ L + Sbjct: 64 HDYSLPAAGESWQSFLRNNAMSFRRALLRYRDGAKVHLGTRPDEKQYDTVETQLRF-MTE 122 Query: 126 AGFSPADTLRSITLVDSFVLGAAL-----DVAAPDEPWRTRDEVGPELAAALATGAPKPQ 180 GFS D L +I+ V F LGA L A D P + + P L AL Sbjct: 123 NGFSLRDGLYAISAVSHFTLGAVLEQQEHTAALTDRPAAPDENLPPLLREALQ--IMDSD 180 Query: 181 RADDAFEYGLAVLLRGLE 198 + AF +GL L+RG E Sbjct: 181 DGEQAFLHGLESLIRGFE 198
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 105 bits (264), Expect = 1e-29 Identities = 75/257 (29%), Positives = 113/257 (43%), Gaps = 9/257 (3%) Query: 4 GLTGKRFAVTGGTRGIGRAVVEGLLAEGAAVAYCARTAEAVTQAQTELTAGGAAALGTAV 63 G+ GK +TG +GIG AV L ++GA +A E + + + L A A Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 64 DVGDADAVTAWVASAAESLGGLDGVVANVSALAIPET----AENWRTTFEVDLLGTVSLV 119 DV D+ A+ A +G +D +V L E W TF V+ G + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 120 DAALPHLLAAGSGSIVTISSVSGREIDFAAGPYGTMKAAITHYTQGVAYKYAAQGVRANT 179 + +++ SGSIVT+ S + Y + KAA +T+ + + A +R N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 180 VSPGNTY--FPGGVWPS--IEENNPELFAQALALN-PTGRMATPQEVANAVVFLSSSAAS 234 VSPG+T +W E + + P ++A P ++A+AV+FL S A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 235 FITGTNLLVDGALTRGV 251 IT NL VDG T GV Sbjct: 245 HITMHNLCVDGGATLGV 261
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 30.0 bits (67), Expect = 0.013 Identities = 8/26 (30%), Positives = 8/26 (30%) Query: 323 TPPLPPPPPPPPVPGALPAPAPAPAG 348 P P P P P P P P Sbjct: 69 VEPEPEPEPIPEPPKEAPVVIEKPKP 94 Score = 28.4 bits (63), Expect = 0.036 Identities = 10/23 (43%), Positives = 11/23 (47%) Query: 324 PPLPPPPPPPPVPGALPAPAPAP 346 P+P PP PV P P P P Sbjct: 76 EPIPEPPKEAPVVIEKPKPKPKP 98
>cloacin#Cloacin signature. Length = 551 Score = 40.1 bits (93), Expect = 2e-05 Identities = 30/83 (36%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Query: 359 NGGDGGSIGGNGGVGRNGGNASGGIARGGNGGTGGDGGSAVTEGTGIGGNGGNGGNATPG 418 +GGDG G N G GN +GG G GG DG +E GG G+G + G Sbjct: 2 SGGDGR--GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 419 AGKAGTGGNGGAGGRGGAADGNQ 441 +G GGNG +GG G Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLS 82 Score = 35.8 bits (82), Expect = 4e-04 Identities = 37/107 (34%), Positives = 46/107 (42%), Gaps = 6/107 (5%) Query: 331 LTGLGGRGGVGGSATSTEGGNTTGGRGGNGGDGGSIGGNGGVGRN---GGNASGGIARGG 387 ++G GRG G+ ++ GN GG G G GG+ G+G N GG + GI GG Sbjct: 1 MSGGDGRGHNTGAHST--SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 388 NGGTGGDGGSAVTEGTGIGGNGGNGGNATPGAGKAGTGGNGGAGGRG 434 G G GG+ G G G G A P A GAGG Sbjct: 59 GSGHGNGGGNG-NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.9 bits (77), Expect = 0.001 Identities = 33/104 (31%), Positives = 38/104 (36%), Gaps = 5/104 (4%) Query: 289 GNGGNGGDRLASRAANGGGGGSATSEAGTATGGSAGSGGSAELTGLGGRGGVGGSATSTE 348 G G N G S NGG G G G S GSG S+E GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTG-----LGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 349 GGNTTGGRGGNGGDGGSIGGNGGVGRNGGNASGGIARGGNGGTG 392 G GG G +GG G+ G V ++ G GG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.1 bits (75), Expect = 0.003 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Query: 380 SGGIARGGNGGTGGDGGSAVTEGTGIGGNGG--NGGNATPGAGKAGTGGNGGAGGRGGAA 437 SGG RG N G G+ TG+G GG +G + G G G GG+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 438 DGNQGNDGNDGGTASSS 454 GN G +GN GG + + Sbjct: 62 HGNGGGNGNSGGGSGTG 78 Score = 30.1 bits (67), Expect = 0.019 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 13/111 (11%) Query: 127 NGGNAGLFGGSGGAGGAGGNDYNTSAAGANANALGAAGGRGGNGAGLFPSLAGNGGAGGA 186 NGG GL G G + G+G + N G + + + GG G G GNG +GG Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG------GNGNSGGG 74 Query: 187 ASSLFGNATGGAGGTGGTANIGLPLPGDDSGVALGPGAGGAGGAATVGAAD 237 + + G + A + P + A G + GA + AD Sbjct: 75 SGT-------GGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 28.9 bits (64), Expect = 0.048 Identities = 35/108 (32%), Positives = 43/108 (39%), Gaps = 19/108 (17%) Query: 221 GPGAGGAGGAATVGAADGTGGTSSQTATGGSGGSGGYGLVSGGATPDLSGNGGKGGNATA 280 GP G GG GA+DG+G +S GG GSG + G GNGG GN Sbjct: 23 GPTGLGVGG----GASDGSGWSSENNPWGGGSGSGIHWGGGSG-----HGNGGGNGN--- 70 Query: 281 YQEGKAVGGNGGNGGDRLASRAANGGGGGSATSEAGTATGGSAGSGGS 328 G G G L++ AA G A S G + S G+ Sbjct: 71 -------SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 68.7 bits (168), Expect = 8e-15 Identities = 78/307 (25%), Positives = 119/307 (38%), Gaps = 25/307 (8%) Query: 38 LYLPAFPRMVDDLHTSPTNVQLTLTAFLLGLAAGQLVFGP----LSDRFGRVRPLVIGAT 93 L +P P ++ DL S +V L A Q P LSDRFGR L++ Sbjct: 23 LIMPVLPGLLRDLVHS-NDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLA 81 Query: 94 VCVAASVVAVLAPSIEVLVGARLAQGLTGAAGMVIGRAIISDLATGRAAARAFSLMMIVG 153 + AP + VL R+ G+TGA G V G A I+D+ G AR F M Sbjct: 82 GAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIADITDGDERARHFGFMSACF 140 Query: 154 GVAPIAAPLAGGFLVGPLGWRGALAVILVLVVAMLVATLVVIRETHTEERR-ARLRAEKS 212 G +A P+ GG + G L + ++ E+H ERR R A Sbjct: 141 GFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNP 199 Query: 213 TTGSPLRDLLHRTYIGHLIAF-----GFAFAVMMAYISASPFIYQTMM-GLSSAQYGAMF 266 + + F G A + F + G+S A +G + Sbjct: 200 LASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILH 259 Query: 267 GVNASGLLLMSALSARLTSHREPRAVAGVGLAAILAAGVAVLALAVLGVPVGWLALPLFV 326 + + ++ ++ARL E RA+ + ++A G + LA GW+A P+ V Sbjct: 260 SL--AQAMITGPVAARL---GERRAL----MLGMIADGTGYILLAFAT--RGWMAFPIMV 308 Query: 327 AVAGMGL 333 +A G+ Sbjct: 309 LLASGGI 315
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 59.1 bits (143), Expect = 5e-11 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 19/222 (8%) Query: 163 AIPLSFLVLVWVFGGLLAAALPVAIGGMAILGTLAVLRLVTFATDVSIFALNLATAMGLA 222 AI L FLV+ + A +P + +LGT A+L ++ +N T G+ Sbjct: 347 AIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYS-------INTLTMFGMV 399 Query: 223 LAI----DYTLLILSRYRDELAAGADRP-DAIRRTMTTAGRTVIFSATT---VALSMAAM 274 LAI D ++++ + P +A ++M+ ++ A V + MA Sbjct: 400 LAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFF 459 Query: 275 VLFPMHFLKSFAYAGVATVAFAAAAAIVVTPAALVLLGDRIDSFDVRKLARRLLRRPAPQ 334 + F+ V+ +A + A+++TPA L + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENK-GGFFGWFNTT 518 Query: 335 PVPVEQRFWYRCAKAVMRRALPLGLAVVVLLLVLGAPFLGVK 376 + K + L ++ L+V G L ++ Sbjct: 519 FDHSVNHYTNSVGKILGSTGRYL---LIYALIVAGMVVLFLR 557 Score = 30.6 bits (69), Expect = 0.031 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 8/146 (5%) Query: 132 AGIAIATGGTAMVNVQITEQSQRDLLVMESLAIPLSFLVLVWVFGGLLAAALPVAIGGMA 191 AGI G + S + +++ + FL L ++ + + + Sbjct: 852 AGIGYDWTGMS----YQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLG 907 Query: 192 ILGTLAVLRLVTFATDVSIFALNLATAMGLALAIDYTLLILSRYRDELAA-GADRPDAIR 250 I+G L L DV F + L T +G L+ +LI+ +D + G +A Sbjct: 908 IVGVLLAATLFNQKNDV-YFMVGLLTTIG--LSAKNAILIVEFAKDLMEKEGKGVVEATL 964 Query: 251 RTMTTAGRTVIFSATTVALSMAAMVL 276 + R ++ ++ L + + + Sbjct: 965 MAVRMRLRPILMTSLAFILGVLPLAI 990
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.002 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 6/56 (10%) Query: 30 RFAGLTALAAVTMVLVQCAPASSPAPPPPGTPIPPAPTPDVAPETFSPITPSPPPA 85 R GL ++A + M APA +PAP PP P PP P P V E + I P P A Sbjct: 95 REEGLESVAGIVM----GAPAGAPAPKPP-RPEPP-PRPVVEKECWETIQPVPEHA 144
>PF06580#Sensor histidine kinase Length = 349 Score = 28.7 bits (64), Expect = 0.029 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 4/97 (4%) Query: 25 TVYLVALALTKSSLAHPLRTFTGGANVATALASPAFVPSLWKSTLFAVVVAVATTTLGLG 84 ++ +A++L L H R+F + L + +V VA T++ Sbjct: 42 MIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWR- 100 Query: 85 LALLLRHRGNGFGVAGALFLLPLVTAPVLVGVAWKLL 121 L + + F + L ++ V+V W LL Sbjct: 101 LLAFINTKPVAFTLP---LALSIIFNVVVVTFMWSLL 134
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.007 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Query: 17 TGKATVVDHVSLSLPKG----SMTVLVGPSGCGKSTTLRIVAGLE 57 GK ++ HV+ + G VL G G GKST + + GL+ Sbjct: 576 VGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLD 620
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 51.5 bits (123), Expect = 2e-10 Identities = 21/50 (42%), Positives = 33/50 (66%) Query: 9 AKLSRDAIVNAALTFLDREGWDALTINALANQLGTKGPSLYNHVHSLDDL 58 A+L+R+++++AAL L+ G D LT LA +LG + P+LY HV + L Sbjct: 2 ARLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRAL 51
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 585 bits (1509), Expect = 0.0 Identities = 161/676 (23%), Positives = 306/676 (45%), Gaps = 71/676 (10%) Query: 11 KVRNIGIMAHIDAGKTTTTERILFYTGISYKIGEVHDGAATMDWMEQEQERGITITSAAT 70 K+ NIG++AH+DAGKTT TE +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 71 TCFWDGNQINIIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSEQVWRQADKYDV 130 + W+ ++NIIDTPGH+DF EV RSL VLDGA+ + K+GV+ Q+ ++ K + Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 131 PRICFVNKMDKIGADFYFSIRTMEERLGANVIPIQIPIGSEGDFEGIVDLVEMKAKVWRG 190 P I F+NK+D+ G D + ++E+L A ++ Q Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ------------------------- 156 Query: 191 ETKLGETYETIDIPEDLQEKADEYRTKLLEAVAETDEALLEKYFGGEELTVEEIKGALRK 250 + +L + E Q + V E ++ LLEKY G+ L E++ Sbjct: 157 KVELYPNMCVTNFTESEQ----------WDTVIEGNDDLLEKYMSGKSLEALELEQEESI 206 Query: 251 LTISSSAYLVLCGSAFKNKGVQPMLDAVIDYLPSPLDVESVTGHVPGKEDELVTRKPSTS 310 + S + V GSA N G+ +++ + + S Sbjct: 207 RFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH--------------------RGQ 246 Query: 311 EPFSALAFKVATHPFFGKLTYVRVYSGKVDSGSAVVNATKGKKERLGKLFQMHSNKENPV 370 FK+ +L Y+R+YSG + +V + K K ++ +++ + + + Sbjct: 247 SELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGELCKI 305 Query: 371 ETASAGHIYAVIG----LKDTTTGDTLSDPNDQVVLESMTFPDPVIEVAIEPKTKSDQEK 426 + A +G I + L GDT P E + P P+++ +EP +E Sbjct: 306 DKAYSGEIVILQNEFLKLNS-VLGDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREM 360 Query: 427 LGTAIQKLAEEDPTFKVHLDQETGQTVIGGMGELHLDILVDRMRREFKVEANVGKPQVAY 486 L A+ ++++ DP + ++D T + ++ +G++ +++ ++ ++ VE + +P V Y Sbjct: 361 LLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Query: 487 KETIKRAVEKVEFTHKKQTGGSGQFAKVLVSIEPFTGEDGATYEFENKVTGGRIPREYIP 546 E + K E+T + + +A + +S+ P G+ ++E+ V+ G + + + Sbjct: 421 MERPLK---KAEYTIHIEVPPNPFWASIGLSVSP--LPLGSGMQYESSVSLGYLNQSFQN 475 Query: 547 SVDAGAQDAMQYGVLAGYPLVNVKLTLLDGAYHEVDSSEMAFKVAGSQVMKKAAAQAQPV 606 +V G + + G L G+ + + K+ G Y+ S+ F++ V+++ +A Sbjct: 476 AVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTE 534 Query: 607 ILEPVMAVEVTTPEDYMGEVIGDLNSRRGQIQAMEERSGARVVKAHVPLSEMFGYVGDLR 666 +LEP ++ ++ P++Y+ D I + ++ ++ +P + Y DL Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLT 594 Query: 667 SKTQGRANYSMVFDSY 682 T GR+ Y Sbjct: 595 FFTNGRSVCLTELKGY 610
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 79.1 bits (195), Expect = 5e-18 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 13/155 (8%) Query: 13 VNIGTIGHVDHGKTTLTAAITKVLH-----DKYPELNESRAFDQIDNAPEERQRGITINI 67 +NIG + HVD GKTTLT ++ L+ + +++ + DN ERQRGITI Sbjct: 4 INIGVLAHVDAGKTTLTESL---LYNSGAITELGSVDKGTT--RTDNTLLERQRGITIQT 58 Query: 68 SHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLARQ 127 +Q E +D PGH D++ + + +DGAIL+++A DG QTR R+ Sbjct: 59 GITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK 118 Query: 128 VGVPYILVALNKADMVDDEELIELVEMEVRELLAA 162 +G+P I +NK D + + V +++E L+A Sbjct: 119 MGIPTI-FFINKIDQNGID--LSTVYQDIKEKLSA 150
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 31.5 bits (71), Expect = 0.002 Identities = 24/81 (29%), Positives = 29/81 (35%) Query: 16 LDGPRRTIDPWKILACVSTAVSAATIATLVWTVNTVSDEETPAERMSAAAGVTVPTVVPS 75 LD PRR P + C+ AV A + T V V + P P Sbjct: 3 LDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVTPADLEPPQAVQ 62 Query: 76 PPAPSVPVPEPESEPVAPAAP 96 PP V PEPE EP+ Sbjct: 63 PPPEPVVEPEPEPEPIPEPPK 83
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 113 bits (283), Expect = 5e-32 Identities = 83/280 (29%), Positives = 128/280 (45%), Gaps = 32/280 (11%) Query: 4 GLEGRVALITGAARGQGRAHAVRLANEGADIVAIDVCKPVSASVTYPMPTPDDLAETVRL 63 G+EG++A ITGAA+G G A A LA++GA I A+D P+ L + V Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDY-------------NPEKLEKVVSS 51 Query: 64 VEATGRKVLSREVDIRDLEAQQQLVADTIEQFGRLDIVVANAGVLSWGRIWEMSEEQWDT 123 ++A R + D+RD A ++ A + G +DI+V AGVL G I +S+E+W+ Sbjct: 52 LKAEARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEA 111 Query: 124 VIDVNLNGTWRTIRAAVPAMIEAGNGGSIIIVSSSAGTKATPGNAHYAASKHGLVALTNA 183 VN G + R+ M GSI+ V S+ A YA+SK V T Sbjct: 112 TFSVNSTGVFNASRSVSKYM-MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKC 170 Query: 184 LAIEAGEFGIRVNSIHPYSIDTPM-----VEADAMMKIFSKYPAFLHSFSPMPYKPVAHD 238 L +E E+ IR N + P S +T M + + ++ L +F Sbjct: 171 LGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIK---GSLETFKT--------- 218 Query: 239 GKPGLQEFMTPEEVSDVVAWLAGDGSATISGSQIAVDRGT 278 G P L++ P +++D V +L + I+ + VD G Sbjct: 219 GIP-LKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGGA 257
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 31.3 bits (71), Expect = 0.004 Identities = 35/188 (18%), Positives = 63/188 (33%), Gaps = 44/188 (23%) Query: 134 EGQGDFLAVGHTILA-GHGFRTDRRAHDELA-----GHVGMQTV-SLELADPR-FYHLDT 185 EG GD L + +L G RT+ ++ ++LA T+ + ++ R + HLDT Sbjct: 217 EG-GDELVLNKGLLVIGISERTEAKSVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLDT 275 Query: 186 ALAVLDDATIAYYPPA--------------------------FADHSRTTLQQMFPDAIE 219 +D + + D L + D I+ Sbjct: 276 VFTQIDYSVFTSFTSDDMYFSIYVLTYNPSSSKIHIKKEKARIKDVLSFYLGRK-IDIIK 334 Query: 220 VSTADAYVLGLNVVSDGLNVVL--PSAAAGFA------DQLRCAGFRPVGVDLSELLKGG 271 + D +DG NV+ P ++ G + + SEL +G Sbjct: 335 CAGGDLIHGAREQWNDGANVLAIAPGEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGR 394 Query: 272 GSVKCCTL 279 G +C ++ Sbjct: 395 GGPRCMSM 402
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.9 bits (67), Expect = 0.039 Identities = 11/69 (15%), Positives = 20/69 (28%) Query: 662 VPAVELLPQRRPGASGIADTPATPFEPIPVASAQPTPPAPRQDIAAFLSARSQPPAPAVD 721 AV+ P+ + P + PV +P P + + + V+ Sbjct: 63 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVE 122 Query: 722 PEPAPTANG 730 PA Sbjct: 123 SRPASPFEN 131
>PERTACTIN#Pertactin signature. Length = 922 Score = 29.7 bits (66), Expect = 0.028 Identities = 35/121 (28%), Positives = 46/121 (38%), Gaps = 13/121 (10%) Query: 155 AAGVA---DGDVYRRARVVARVDTPSGTVVLTVRPQGGEF-GDFLPGQYVSVGVTLPDGA 210 AAGVA V+ + + R D P+G V GG G F P GV + D Sbjct: 240 AAGVAAMDGAIVHLQRATIRRGDAPAGGAVPGGAVPGGAVPGGFGPLLDGWYGVDVSDST 299 Query: 211 RQLRQYSLVNAAGGGELTFAVRPVAAVAGRPAGEVSSWIAANVWVGDMIDVTVPFGDLPA 270 L Q S+V A G A AGR A S + + G++I+ P Sbjct: 300 VDLAQ-SIVEAPQLG--------AAIRAGRGARVTVSGGSLSAPHGNVIETGGGARRFPP 350 Query: 271 P 271 P Sbjct: 351 P 351
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 44.2 bits (104), Expect = 6e-08 Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 10/167 (5%) Query: 2 GSEADESQRAAVLDAALAEVQQWGVDRFSIEGVAQRSGLTADYIRQTWTSKRQLIIDTLR 61 + + R +LD AL Q GV S+ +A+ +G+T I + K L + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 62 TYSESMVPQSDT------GSLHGDLTVLALSIGNHLNNEIGRRIARMLVV----DSKSLV 111 ++ G L + + + E RR+ ++ + Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 112 VDSDTRVQFWLLRRAAIEEIFERAAARGELRSDVKPLVALQLLTSPI 158 V + L IE+ + L +D+ A ++ I Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 33.4 bits (76), Expect = 0.003 Identities = 25/114 (21%), Positives = 36/114 (31%), Gaps = 4/114 (3%) Query: 110 PPPTVAVPVTGRSGPTPAPGRPSATWPAPPPPPPSAPTGRPPVHRPVTGNQSQPYPAATS 169 P P + VT + P + P P P P P + +P P Sbjct: 39 PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 98 Query: 170 RPAPVPQPISAPAMESATVMGPAAAPRGGGDGNIATSMLRILRPGSAPKAPPGS 223 +P PV + P + V A+P N A + L +A P S Sbjct: 99 KPKPVKKVQEQPKRDVKPVESRPASPF----ENTAPARLTSSTATAATSKPVTS 148 Score = 30.7 bits (69), Expect = 0.020 Identities = 29/125 (23%), Positives = 40/125 (32%), Gaps = 9/125 (7%) Query: 110 PPPTVAVPVTGRSGPTPAPGRPSATWPAPPPPPPSAPTGRP-PVHRPVTGNQSQPYPAAT 168 PP V P P P P P P P P +P P +PV Q QP Sbjct: 57 PPQAVQPPPEPVVEPEPEP-EPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR--- 112 Query: 169 SRPAPVPQPISAPAMESATVMGPAAAPRGGGDGNIATSMLRILRPGSA--PKAPPGSIKI 226 PV ++P +A ++ TS+ R S P+ P + + Sbjct: 113 -DVKPVESRPASPFENTAPA-RLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQAL 170 Query: 227 GRAGD 231 G Sbjct: 171 RIEGQ 175
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.0 bits (145), Expect = 2e-13 Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 1 MPRPARYTVDALLDAAAELLAADGPAAVTMSAVARSTGAPSGSVYHRFPTRAALCGELWV 60 + A+ T +LD A L + G ++ ++ +A++ G G++Y F ++ L E+W Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 RTEERFQEQFVEAL-TSADDPQQRCVDAALRLVQWCRENP 99 +E E +E DP + + +++ Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEE 104
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.8 bits (64), Expect = 0.046 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 7/60 (11%) Query: 268 LEYQGRKLLARF--DAGTYVALTDALSSHDVGRGRGGVAAA----LRGCPVPTVVGGITS 321 L Y G LLA F + G A +S+ G++AA L G PV +VG +T Sbjct: 346 LGYDGDSLLAAFHKETGAIDASLTTISTVLASVS-SGISAAATTSLVGAPVSALVGAVTG 404
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 49.2 bits (117), Expect = 3e-09 Identities = 17/81 (20%), Positives = 23/81 (28%), Gaps = 4/81 (4%) Query: 73 RKVTPRRPSGREAIVGSLVSAATDEFAAVGFRGASIRSIARRANVNHGMISRYFGSKGQL 132 RK R+ I+ A F+ G S+ IA+ A V G I +F K L Sbjct: 3 RKTKQEAQETRQHIL----DVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDL 58 Query: 133 LHAALSALAEENATHLRANDD 153 Sbjct: 59 FSEIWELSESNIGELELEYQA 79
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 50.2 bits (120), Expect = 4e-08 Identities = 46/240 (19%), Positives = 88/240 (36%), Gaps = 25/240 (10%) Query: 136 AALVQVYLRGNQGEALSNESVDSIRDIVADTPA--PDGVKAYVTGAAPTITDNFEVGNEG 193 AA + + L A + ++ +I+ +A+ P G+K + T + Sbjct: 286 AAGLGIKLATG---ANALDTAKAIKAKLAELQPFFPQGMK-VLYPYDTTPFVQLSIHEVV 341 Query: 194 THLVTAITFAVIALMLLIVYRSLVTMFIMLVVVAVELMAARGIVAVLAHTGVIGLSTYAT 253 L AI ++ L++ + +++ I + V V L+ A+LA G Y+ Sbjct: 342 KTLFEAI--MLVFLVMYLFLQNMRATLIPTIAVPVVLLGT---FAILAAFG------YSI 390 Query: 254 NLLTL----LAIAAGTDYAIFLVGR-YQEARNRGLDRDEAYYDMFRGTVHVIVGSGLTIV 308 N LT+ LAI D AI +V + L EA +VG + + Sbjct: 391 NTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLS 450 Query: 309 GAVACLYF---TRLPYFQTLGVPAALGVLVTLVAALTLGPAVVVIASRFGLLEPKRRKRA 365 + F + ++ + + ++++ AL L PA+ + E K Sbjct: 451 AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGG 510 Score = 43.3 bits (102), Expect = 4e-06 Identities = 34/205 (16%), Positives = 72/205 (35%), Gaps = 24/205 (11%) Query: 724 INALRDSAFDAIKATPLSDAKIYVAGTASTYKDIQEGSTYDLMIAALAAIALILLIMIFI 783 + L+ +K D +V + S ++++ AI L+ L+M Sbjct: 310 LAELQPFFPQGMKVLYPYDTTPFV-----------QLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 784 TRSFVAAVVIVGTVVLSLGASLGLSVLVWQYIFGIELYWIVPALAIILLLAVGADYNLLL 843 ++ A ++ V + L + + FG + + ++L + + D +++ Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAI-----LAAFGYSIN-TLTMFGMVLAIGLLVDDAIVV 412 Query: 844 ---ISRFKEEIGAGLNTGIIRAMGGTGAVVTAAGLVFAAT---MASFVFSDLVVLGQIGT 897 + R E ++M + +V +A MA F S + Q Sbjct: 413 VENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSI 472 Query: 898 TIAMGLVFDTLIVRSFMTPSIAALL 922 TI + L+ TP++ A L Sbjct: 473 TIVSAMALSVLVALIL-TPALCATL 496
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.6 bits (131), Expect = 2e-11 Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 11/166 (6%) Query: 11 KPRWTEREAELLAVTLRHLQEHGYERLTVETVATAARCSKATIYRRWPSKERLVLAAFIE 70 K E +L V LR + G ++ +A AA ++ IY + K L + Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 71 GTN------CAEVPPRTGSLRGDLIHIGSVICEQSSEHASTMRAVLMELDRSPELAEAF- 123 + G L I + E + + + + + E Sbjct: 66 SESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAV 125 Query: 124 ----ETEFVLQRRAVYDEVLAAAVDRGEIDADAINSEIQDLLAGYL 165 + L+ ++ L ++ + AD + ++ GY+ Sbjct: 126 VQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 25.4 bits (55), Expect = 0.030 Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 32 NDRLQEEGKAQQDKAEAEKDVAKKEAEAETARAEAKTQEARQKAAQKS 79 N+ Q + ++ + K+ A E E + KTQE + +Q S Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 29.4 bits (65), Expect = 0.020 Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 17/94 (18%) Query: 29 AHTHSVYEA-ASDQRPKLQSWLATALPPMLPGRDPVRVVGVGVGDGSVDAPLAAALAADG 87 +H+HS A + R L+S L PP+ P P G G+ AP Sbjct: 133 SHSHSALHAPGTPVREGLRSHLDPRTPPLPPRERPHTSGHHGAGEARATAP--------- 183 Query: 88 RRVHYTGVEPHRPSA-AAFTTRLAALDVATLTPA 120 + V P+ P A A ++RL L TL PA Sbjct: 184 -----STVSPYGPEARAELSSRLTTLR-NTLAPA 211
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.5 bits (154), Expect = 8e-15 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 14/168 (8%) Query: 11 RERKRTKTQRAIRRAALRLFLDQGYSNTTVEQIAERAEVSPRTFYRYFGVKEAVL--ICD 68 +++ +T++ I ALRLF QG S+T++ +IA+ A V+ Y +F K + I + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 69 QFTPIVTAFVN---APRELSPVAAYRFAVKEYFAGLTEEDRQDAIVS--QHLLYSAPE-- 121 + A P++ R + E+R+ ++ H E Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 122 ----ARGLLYSEYVTLIRLLTDALTQRLGEGVAFTDRQAIAGAIVGVL 165 A+ L E I + A + A + G + Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEA-KMLPADLMTRRAAIIMRGYI 171
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.5 bits (66), Expect = 0.013 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 50 AVAGLNTAVALAVGSGAGIAALRLLRREPVQPAVSGLLGV 89 ++ ++T +A +V SG AA L PV V + G+ Sbjct: 367 SLTTISTVLA-SVSSGISAAATTSLVGAPVSALVGAVTGI 405
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 45.0 bits (106), Expect = 5e-08 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 1/114 (0%) Query: 15 QKQAQARLEVSRHACALFWERGVAATSGDDIAAAAGLSTRTIWRYFRSKESCVEPVLALS 74 Q+ + R + A LF ++GV++TS +IA AAG++ I+ +F+ K + LS Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 75 AQRFITLAHRWPAELSLADH-MAADIADHPLTEKELADEVGALRIATMSASEPA 127 L + A+ + +I H L + L E Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 53.9 bits (129), Expect = 4e-11 Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 21/157 (13%) Query: 5 ALLVIDMFNTYTHP------DAEELAANAAEIVTPISDL------IAQAAARDDVELVYV 52 LL+ DM N + EL+AN ++ L AQ +++ + + Sbjct: 32 VLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNPDDRALL 91 Query: 53 NDNYGDFTATHTGIVQAALDGARPDLVAPLTPEPDSRFLTKVRHSAFYATPLDYLLSRLG 112 D +G G+ + ++ L PE D LTK R+SAF T L ++ + G Sbjct: 92 TDFWG------PGLNSGPYEEK---IITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEG 142 Query: 113 VRRIILTGQVTEQCVLYTALDGYVRHYDVVVPPDAVA 149 ++I+TG L TA + ++ DAVA Sbjct: 143 RDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVA 179
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 135 bits (340), Expect = 1e-40 Identities = 78/263 (29%), Positives = 120/263 (45%), Gaps = 17/263 (6%) Query: 2 SSSLNGKGVLVTGAASGIGEATARRLLDDGAHVVGFDLTPEAPQTLSDA-------ADYL 54 + + GK +TGAA GIGEA AR L GAH+ D PE + + + A+ Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 55 SGDVSDTEAVERAVASVVEKAGRLDGVVHSAGVGGGGPIHLLPDAEWDRVVDINLKATFL 114 DV D+ A++ A + + G +D +V+ AGV G IH L D EW+ +N F Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 115 VMRAALSQMVKQDRVDGERGAIVTLSSVEGLEGTAGGSAYNASKGGVVLLTKNAAIDYGP 174 R+ M+ + G+IVT+ S +AY +SK V+ TK ++ Sbjct: 123 ASRSVSKYMMDR-----RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 175 SGIRANVICPGFIQTPMFDSVMGIAGME-----GPREELRHEHKLRRFGRPDEVAAVAAF 229 IR N++ PG +T M S+ G E + L++ +P ++A F Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 230 LLSAGASFVSGQAIAVDGGYTAG 252 L+S A ++ + VDGG T G Sbjct: 238 LVSGQAGHITMHNLCVDGGATLG 260
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 135 bits (342), Expect = 5e-41 Identities = 78/256 (30%), Positives = 115/256 (44%), Gaps = 18/256 (7%) Query: 5 LAGKVALISGAARGMGASHARMMVSHGAKVVCGDILDSDGELVAKELGDAARYVH---LD 61 + GK+A I+GAA+G+G + AR + S GA + D E V L AR+ D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 62 VTRTEDWDAAVATAVAEFGGLDILVNNAGILNIGTIEDYELSEWHRILDINLNGVFLGIR 121 V + D A E G +DILVN AG+L G I EW +N GVF R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 122 AAAPTMKTAGRGSIINISSIEGFAGTVACHGYTATKFAVRGLTKSTALELGPFGIRVNSV 181 + + M GSI+ + S + Y ++K A TK LEL + IR N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 182 HPGLVKTPMAD--WVPEDIFQSA-------------LGRIAQPQEVSNLVVYLASDESSY 226 PG +T M W E+ + L ++A+P ++++ V++L S ++ + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 227 STGAEFVVDGGTIAGL 242 T VDGG G+ Sbjct: 246 ITMHNLCVDGGATLGV 261
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 120 bits (301), Expect = 5e-35 Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 5/248 (2%) Query: 11 KSAVITGAAFGIGRATAVRFANEGARLIVTDVQGEPLRALADELRSAGAQVETVVGDVSV 70 K A ITGAA GIG A A A++GA + D E L + L++ E DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 71 ESDARQMIAAAIERYGRLDVLVANAGIIPLGDVLEMTVSDWDEVMAIDGRGMFLTCKFAI 130 + ++ A G +D+LV AG++ G + ++ +W+ +++ G+F + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 131 EAMLTTGGGAIVCLSSISGLAGQKRQAAYGPAKFVATGLTQHLAVEWAEQGIRVNAVAPG 190 + M+ G+IV + S + AAY +K A T+ L +E AE IR N V+PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 191 TIRTERVLRLPEEPGGSE-----YLAEIERMHPMGRIGEPDEVASAIVFLASDDASFITG 245 + T+ L + G+E L + P+ ++ +P ++A A++FL S A IT Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 246 AVLPVDGG 253 L VDGG Sbjct: 249 HNLCVDGG 256
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 25.2 bits (55), Expect = 0.049 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Query: 5 ILGAVVVGLIVGALARLIMPGKQSIGVIMTVLLGAIGSFLGAWVSYKLGYSNANGGFEFI 64 L A+ ++ LA L + V++ V LG +G L A + N + Sbjct: 874 ALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLF---NQKND------V 924 Query: 65 PFLVGIIFAVVLIA 78 F+VG++ + L A Sbjct: 925 YFMVGLLTTIGLSA 938
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.006 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 8/91 (8%) Query: 98 QQDAQKRTAEAAEAQKAAAAKAQAEADAQREVEQARAQERVDVRAAADEVVEAAAEQQTA 157 + + + +T + +A + E AR E A + + A Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPA--PATPSETTETVA 1041 Query: 158 E------RITENAHEQAEENRARAARLTNEA 182 E + E + A E A+ + EA Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEA 1072
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 44.7 bits (105), Expect = 1e-07 Identities = 20/159 (12%), Positives = 53/159 (33%), Gaps = 7/159 (4%) Query: 70 LAERSDALSRAAKLDAAATQKQQRADAQAKT-KVDGAINDQKQAKEAKERDVQDARTQAE 128 + + A A KQ+ + ++ + + +V+ E Sbjct: 1025 VPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNE 1084 Query: 129 -QRKKAAAEDAQKRADAAKRQVDEVAAQRKNSVEDAKRKEQARIRAEE--EKATSAAKSK 185 + + ++ Q ++ V + K VE K +E ++ ++ ++ S Sbjct: 1085 VAQSGSETKETQTT---ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 186 LDDAKAKSDAAESKRAQADRLEQLADAEKQKRRTARATE 224 + ++D + + + AD E+ + T+ E Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVE 1180
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 29.8 bits (67), Expect = 0.008 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 14/50 (28%) Query: 129 KLVLGGYSQGAAVMGFVTTELIPDGVTASEVPAPMPPDIANHVSAVTLLG 178 K++L GYS GA V+ FV E+ P +V LL Sbjct: 118 KVILIGYSFGAEVIPFVLNEM--------------PARYRKNVLGAVLLS 153
>MPTASEINHBTR#Metalloprotease inhibitor signature. Length = 122 Score = 26.1 bits (57), Expect = 0.039 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 2/57 (3%) Query: 9 TLGVDDLSRARRFYEDGLGWTPKAAPEGVVFYQLPGIALALFGRADLAEDAHHPVDG 65 L D + + + W+P P+G+ G + R E G Sbjct: 59 ALAGDVACAEQWLGDKPVSWSP--TPDGIWLMNAEGTGITHLNRQKEGEYTGRTPSG 113
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 94.0 bits (233), Expect = 6e-25 Identities = 73/267 (27%), Positives = 124/267 (46%), Gaps = 24/267 (8%) Query: 7 SAYDLTGQVALVTGSSSDLGIGFASARLLGQFNAAVM-VTGTTDRAAERAAELRAEGIVA 65 +A + G++A +TG++ GIG A AR L A + V ++ + + L+AE A Sbjct: 2 NAKGIEGKIAFITGAAQ--GIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA 59 Query: 66 HSFVADLMDPDAAGDLVAATIAEFGKLDILVNNAGLASVNIPERPNSLMVMTDEEWALAL 125 +F AD+ D A ++ A E G +DILVN AG+ RP + ++DEEW Sbjct: 60 EAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVL------RPGLIHSLSDEEWEATF 113 Query: 126 RRNVDSAFFVTRAALPGMVERGYGRIINVASTAGILTAYTGDVGYHTAKAAMLGMTRSVA 185 N F +R+ M++R G I+ V S T Y ++KAA + T+ + Sbjct: 114 SVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPA-GVPRTSMAAYASSKAAAVMFTKCLG 172 Query: 186 VDYAKNGVTANVVIPGWIATAAQL--------PSEVAAGNAT------PIGRSASAAEVA 231 ++ A+ + N+V PG T Q +V G+ P+ + A +++A Sbjct: 173 LELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIA 232 Query: 232 AGIAFFATPGASYVTGTTLAIDGGNSI 258 + F + A ++T L +DGG ++ Sbjct: 233 DAVLFLVSGQAGHITMHNLCVDGGATL 259
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.2 bits (148), Expect = 7e-14 Identities = 31/171 (18%), Positives = 64/171 (37%), Gaps = 7/171 (4%) Query: 9 ARGVQRRTEIIDAAIEVMARVGLAGLSMRVVASQAGIPVGALSYYFDDKSDLVAQAFRQL 68 + R I+D A+ + ++ G++ S+ +A AG+ GA+ ++F DKSDL ++ + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 69 SDREIERVVHTANQLQPSMSAEELADAVADMIIDGFTSP-----RGAIVTRYELVTEASR 123 E + + P L + + ++ T I + E V E + Sbjct: 67 ESNIGELELEYQAK-FPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAV 125 Query: 124 DERLRPMFEAWYAAMVPALSRLFRELGSHQPELDSRTVMAVTAGLEIDNLY 174 ++ + + + E +L +R + G I L Sbjct: 126 VQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGY-ISGLM 175
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.0 bits (119), Expect = 2e-09 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 2/145 (1%) Query: 43 RWREHRKKVRSEIVDAAFRAIDQLGPE-VSLREIAEEAGTAKPKIYRHFTDKSDLFQAIG 101 + ++ ++ R I+D A R Q G SL EIA+ AG + IY HF DKSDLF I Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 102 QRMRDMLWAAIFPSIDISTDPARTVIFRAVEQYVRLVDEHPNVIRFL-MQGRFAEQSESA 160 + + +V+ + + + + E Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 161 MRALNEGRDITLAMAEMFNNELRDM 185 R++ L + L+ Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHC 148
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.002 Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 653 TVEVGLSETGTALNLSVTDDGVGGASTDG---GSGLVGLRDRVEALSGE---LTVTSRPG 706 + + ++ + L V + G G+GL +R+R++ L G + ++ + G Sbjct: 280 KILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQG 339 Query: 707 EGTRISATIPVP 718 + A + +P Sbjct: 340 KVN---AMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 53.7 bits (129), Expect = 1e-11 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 9/107 (8%) Query: 1 MNGPRCLIVDDSAAFRDAARAMLERGGIEVVGTACDAAEAMRCAEELRPDVALVDVDLGS 60 M G L+ DD AA R L R G +V +AA R D+ + DV + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 DSGFDVAEQMT----GVPVILTSTHDEQDFADLIAA--SPALGFLPK 101 ++ FD+ ++ +PV++ S + F I A A +LPK Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQN--TFMTAIKASEKGAYDYLPK 104
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.8 bits (176), Expect = 8e-17 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 11/165 (6%) Query: 1 MCALRVVVADDDVLLREGLASLLERSGFEVAGQAGDGDALLELVRAERPDLVLVDIRMPP 60 M ++VADDD +R L L R+G++V + L + A DLV+ D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 THTSEGLDAARVIREESPDIGIVVLSAHIDVDHAMELLAGGHAIGYLLKTRVTDVTDFVE 120 + D I++ PD+ ++V+SA A++ G A YL K D+T+ + Sbjct: 60 EN---AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKG-AYDYLPKPF--DLTELIG 113 Query: 121 TLQRIANGASVVDPALVAELVSARKRDDPLGALSTREHEVLTLMA 165 + R A ++L + PL S E+ ++A Sbjct: 114 IIGR----ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLA 154
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 66.6 bits (162), Expect = 1e-15 Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 15/183 (8%) Query: 6 AGRPRLHAQRRPGTTARDEILDAAGELFTTLGYAATSTRTIAESVGIRQASLYHYFSTKD 65 A + + AQ R ILD A LF+ G ++TS IA++ G+ + ++Y +F K Sbjct: 2 ARKTKQEAQET-----RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKS 56 Query: 66 DILCALLSQTVAPTLAFIPRLQTAYPGMTEPQQLHAL-AAFDGAQLLGGRWNLGALYLLP 124 D+ + + + Q +PG L + R L + Sbjct: 57 DLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHK 116 Query: 125 ELRDARLEPFFSDRERLRLHYLQLSLDIVG--------HTGVD-DAAADLPFRLVESLVN 175 + + L L + + AA + + L+ Sbjct: 117 CEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176 Query: 176 MWS 178 W Sbjct: 177 NWL 179
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.8 bits (66), Expect = 0.041 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 566 SVARVIADRIAVMYLGRIVELGPAEQVIGAPAHPYTRALVGSIPDLGRESRILP-GEPAS 624 S+A+ I+D IAV LGR++ P+ +G + Y+ D +S G A+ Sbjct: 276 SLAQAISDAIAV--LGRVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAA 333 Query: 625 PLSPP 629 L P Sbjct: 334 KLGLP 338
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 49.2 bits (117), Expect = 2e-09 Identities = 42/191 (21%), Positives = 66/191 (34%), Gaps = 20/191 (10%) Query: 12 VLVVVDIQEGGGMSADDAGIPVMPGHVERVGRAQRLVAAAREARIPVVFFQEVHRPSGID 71 VL++ D+Q + PV E ++L + IPVV+ + + D Sbjct: 32 VLLIHDMQNYFVDAFTAGASPV----TELSANIRKLKNQCVQLGIPVVYTAQPGSQNPDD 87 Query: 72 FGRELDGTEGVHCVDGGPGTDLEPTLRPNLD--GPNH-EFHIVKRRYSGFIGTDFEIVLS 128 D GPG + P + P + + K RYS F T+ ++ Sbjct: 88 RALLTDFW--------GPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMR 139 Query: 129 GLKASTLILIGGLTDVCVHYTFADAHQRDFYVRVVSDCVGGSSQYRHDAALDAMEYL--Q 186 LI+ G + T +A D V D V S +H A+EY + Sbjct: 140 KEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKH---QMALEYAAGR 196 Query: 187 TGALRTTDEIL 197 TD +L Sbjct: 197 CAFTVMTDSLL 207
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.0 bits (73), Expect = 0.004 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Query: 359 NPAAMAGLDDR-GSIAVGRRADLCVFDP 385 NPA GL GS+ VG+RADL +++P Sbjct: 412 NPAIAHGLSHEIGSLEVGKRADLVLWNP 439 Score = 28.9 bits (65), Expect = 0.039 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 19/99 (19%) Query: 1 MDLVLRGDRVLIDGEVRPGSVAVDGGMIVAVGSREADYGGVDVVDIPAPAA--------- 51 +D V+ +L + + + G I A+G + + V I Sbjct: 68 VDTVITNALILDHWGIVKADIGLKDGRIAAIG-KAGNPDMQPGVTIIVGPGTEVIAGEGK 126 Query: 52 -LLPGFVDTHVHVNDPGTSWEGFATATAAAAAAGITTVV 89 + G +D+H+H P E A +G+T ++ Sbjct: 127 IVTAGGMDSHIHFICPQQIEE--------ALMSGLTCML 157
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 39.0 bits (91), Expect = 8e-05 Identities = 48/243 (19%), Positives = 76/243 (31%), Gaps = 59/243 (24%) Query: 766 TVLLTGATGFLGRYLALEWLERLSMVGGTLICL--------VRAKDDAAAR-ARLDSTFD 816 L+TGA GF+G +++ LE G ++ + V K A+ F Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEA----GHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFH 57 Query: 817 TGDPTLLEHYRRLAADHLEVIAGDKGEPD--LGLDPQTWQRLADSVDLIVDPAALVNHVL 874 D E L A + + R + + +P A + Sbjct: 58 KIDLADREGMTDLFASG---------HFERVFISPHRLAVRYS-----LENPHAYAD--- 100 Query: 875 PYSQLFGPNALGTAELIRVALTTRLKPFVYVSTIGVGAGIAPGSFTEDADIRAISATRSV 934 N G ++ +++ +Y S+ V F+ D Sbjct: 101 -------SNLTGFLNILEGCRHNKIQHLLYASSSSVYGLNRKMPFSTD----------DS 143 Query: 935 DDSYANGYGNSKWAGEVLLREAHELSGLPVAVFRCDMILADTTYSGQLNLPDM----FTR 990 D + Y +K A E++ L GLP R T Y G PDM FT+ Sbjct: 144 VDHPVSLYAATKKANELMAHTYSHLYGLPATGLR-----FFTVY-GPWGRPDMALFKFTK 197 Query: 991 LML 993 ML Sbjct: 198 AML 200
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 61.4 bits (149), Expect = 3e-12 Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 28/222 (12%) Query: 366 IPGGRTQITGQFTQDSARELANVLKYGSLPLSFDSSEAETVSASLGLSSLRAGLIAGAVG 425 G + G Q+ ++ L L S E +V + + + + Sbjct: 105 EDGQGAEGQGAQGQELVNKVETALTAVDPALKITSFE--SVGPKVSGELVWTAVWSLLAA 162 Query: 426 LAAVLLYSLLYYR---ALGVLIALSLTASGAMVFAILVLLGRYINYTLDLAGIAGLIIGI 482 ++ Y + + ALG ++AL + + +L + L +A L+ Sbjct: 163 TVVIMFYIWVRFEWQFALGAVVALVHDV--LLTVGLFAVLQLKFD----LTTVAALLTIT 216 Query: 483 GMTADSFVVFFERIKDEIREGRSFR------SAVPRGWARARKTIMSGNAVTFLAAAVLY 536 G + + VV F+R+++ + + ++ +V +R T+M+G T LA + Sbjct: 217 GYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNETLSR---TVMTG-MTTLLALVPML 272 Query: 537 FLAVGQVKGFAFTLGLTTILDVVIVFLVTWPLVYMASKSPLW 578 ++GF F + V VF T+ VY+A L+ Sbjct: 273 IWGGDVIRGFVFAM-------VWGVFTGTYSSVYVAKNIVLF 307 Score = 33.3 bits (76), Expect = 0.003 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 5/101 (4%) Query: 11 RYLALFLVLLVGVFALVFFTGDKKPDPKLGIDLQGGTRVTLTARTPDGSPPSRDALIQAQ 70 ++ +++ + +++ GID +GGT + + T R AL + Sbjct: 20 QWATFGAAIVMMIASVILPL---VIGLNFGIDFKGGTTIRTESTTAIDVGVYRAAL-EPL 75 Query: 71 QIISSRVDGLGVSGSEVIIDGQNLVITVPGDDTSEARSLGQ 111 ++ + + S ++ +D A G Sbjct: 76 ELGDVIISEVR-DPSFREDQHVAMIRIQMQEDGQGAEGQGA 115
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 243 bits (621), Expect = 1e-79 Identities = 76/312 (24%), Positives = 145/312 (46%), Gaps = 14/312 (4%) Query: 43 FEVIGKRKLWYTVSGLIVAVAIGAMLIRGFTFGIDFEGGTKMAMPRG---DSGITTSQVE 99 F+ + + + +++ ++ L+ G FGIDF+GGT + D G+ + +E Sbjct: 14 FDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAIDVGVYRAALE 73 Query: 100 TV-FNDTIGTPPESVVVVGSGDSATFQIRSETLTNEQTEQLRTA--LFDAFAPVGADGQP 156 + D I + A +I+ + Q L + P Sbjct: 74 PLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALTAVDP 133 Query: 157 SKQSISDSAVSETWGGQITQKALIALIVFLVLAAIYITVRYERYMALAALATLVFDLVVT 216 + + S +V G++ A+ +L+ V+ YI VR+E AL A+ LV D+++T Sbjct: 134 ALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLT 193 Query: 217 AGVYALVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTEGFEHATRRTFAEQANLAV 276 G++A++ + TV LLTI G+S+ DTV+VFD++ EN ++ + NL+V Sbjct: 194 VGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYK---TMPLRDVMNLSV 250 Query: 277 NQTFMRSINTSLISVLPIIALMVVAVWLLGVGTLMDLALVQLVGVIVGTYSSIYFATPLL 336 N+T R++ T + ++L ++ +++ G + + GV GTYSS+Y A ++ Sbjct: 251 NETLSRTVMTGMTTLLALVPMLI-----WGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIV 305 Query: 337 VTLRERTDVVRK 348 + + + +K Sbjct: 306 LFIGLDRNKEKK 317
>INTIMIN#Intimin signature. Length = 939 Score = 30.0 bits (67), Expect = 0.032 Identities = 39/289 (13%), Positives = 82/289 (28%), Gaps = 21/289 (7%) Query: 201 TAILNNDGPAVERIAQVWNTTWNLGADLDL--KKFPSSGPYKLDSVTDEGAVVLVTNDKW 258 TA + +G A + +N A L SG + +D+ V+V+ Sbjct: 581 TATVKKNGVAQANVPVSFNIVSG-TAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTA 639 Query: 259 WGTKPITGRITVWPRSPELQDRVNEGAYDVVDIAAGSSGTLNLPDDYVRTDSPSAGIEQL 318 T + ++ + + + E D A + ++ D P + E Sbjct: 640 EMTSALNANAVIFV--DQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVT 697 Query: 319 IFAPQGPLSAVPARRALALCTPRDVIARNAEVPVANARL-NAATEDAYGAAEATPQVNDF 377 G LS + + + + +AR+ + A + P+V F Sbjct: 698 FTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVK------APEVEFF 751 Query: 378 AVANPEAARAALNGQPLTVRIGYQTPNARLAATVGAIARTCAPAGITVE-DVAGENTGPL 436 + + +G + +G + N Sbjct: 752 TTLTIDDGNIEI--------VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIA 803 Query: 437 ALRNNEIDVLIASTGGAAGSGSTGSSAMDAYTLHSANGNNLPRYSNERI 485 ++ + V + G S + + YT+ + N +P S Sbjct: 804 SVDASSGQVTLKEKGTTTISVISSDNQTATYTIATPNSLIVPNMSKRVT 852
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.006 Identities = 48/225 (21%), Positives = 81/225 (36%), Gaps = 41/225 (18%) Query: 61 ASVILYGPPGTGKTTLASMISQATGRRFEAL-----SALSAGVKE------VRAVIDVAR 109 ++++ G GTGK +A + RR +A+ + E + A+ Sbjct: 161 LTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQ 220 Query: 110 QASM----RGEQTVLFIDEVHRFSKTQQDALLAAVENRV-------------VLLVAATT 152 S + E LF+DE+ Q LL ++ V +VAAT Sbjct: 221 TRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN 280 Query: 153 ENPSFSVVAPLLSRSLI-------LQLQPLA--PEDIGTVIRRAIDDERGFGGKV-AVTE 202 ++ S+ L L L+L PL EDI ++R + G V + Sbjct: 281 KDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQ 340 Query: 203 DAIEQLVQLS-AGDARRALTALEVASETVTASGETVTVEVIEQSL 246 +A+E + G+ R + T + +T E+IE L Sbjct: 341 EALELMKAHPWPGNVRELENLVRRL--TALYPQDVITREIIENEL 383
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 35.5 bits (81), Expect = 4e-04 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 11/113 (9%) Query: 143 EALSISSQKVMADLQRARTEQVNRESAARLAKQQADDAVKAAESSQADAVSALSSAQETF 202 EA + M L A ++ E+ + L Q + + AA++S A + + Q Sbjct: 171 EAYMRFLDREMEGLTAAYNVKLFTEAISSL--QIRMNTLTAAKASIEAAAANKAREQ--- 225 Query: 203 KAQQVELDRLAAERAQAQARLKEAQTLAAPSSG---APAAA-PSAPAAEGTAA 251 E R A E+A+ QA ++ A T A P++G A AA A+G A+ Sbjct: 226 --AAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAAS 276
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 0.003 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 21/176 (11%) Query: 28 HAAPSAAQSNGGLQSEVHTLERAIFEVKRIIVGQD----QLVERMLVGLLAKGHVLLEGV 83 ++ + LE + ++ G+ ++ + + +++ G Sbjct: 110 ELIGIIGRALAEPKRRPSKLEDDSQDGMPLV-GRSAAMQEIYRVLARLMQTDLTLMITGE 168 Query: 84 PGVAKTL---AVETFAKVVGGTFARIQ---FTPDLVPTDIVG------TRIYRAGKEEFD 131 G K L A+ + K G F I DL+ +++ G T F+ Sbjct: 169 SGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFE 228 Query: 132 IELGPVVVNFLLADEINRAPAKVQSALLEVMAERKISIGGKTFPLPSPFLVMATQN 187 G L DEI P Q+ LL V+ + + + G P+ S ++A N Sbjct: 229 QAEGGT----LFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN 280
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 116 bits (291), Expect = 1e-33 Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 21/252 (8%) Query: 23 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPDGLFGVE-----------CDVTD 71 + +TG +GIG A+A+ LA+ G +A + + DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 72 SAAVDRAFTEVEEHQGPVEVLVSNAGISQDAFLMRMTEERFENVINANLTGAFRVAQRAS 131 SAA+D +E GP+++LV+ AG+ + + +++E +E + N TG F ++ S Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 132 RSMQRKRFGRIIFIGSVSGMWGIGNQANYAAAKAGLIGMARSISRELSKAGVTANVVAPG 191 + M +R G I+ +GS + A YA++KA + + + EL++ + N+V+PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 192 YIDTEMTRSL-------DERIQAGALEF---IPAKRVGTADEVAGAVSFLASEDASYIAG 241 +T+M SL ++ I+ F IP K++ ++A AV FL S A +I Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 242 AVIPVDGGMGMG 253 + VDGG +G Sbjct: 249 HNLCVDGGATLG 260
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 51.2 bits (122), Expect = 9e-10 Identities = 54/272 (19%), Positives = 106/272 (38%), Gaps = 30/272 (11%) Query: 5 LEGKRILVTGIITDSSIAFHIAKVAQEAGAELVLTGFD----RMKLIQRIIDRLPNPAPL 60 +EGK +TG I +A+ GA + D +++ + + A Sbjct: 6 IEGKIAFITG--AAQGIGEAVARTLASQGAHI--AAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 61 LELDVQNSEHLDSLAARVTEVIGEGNKLDGVVHSIGFMPQTGMGVNPFFDAPYEDVAKGI 120 DV++S +D + AR+ +G +D +V+ G + E+ Sbjct: 62 FPADVRDSAAIDEITARIEREMG---PIDILVNVAGVLR-----PGLIHSLSDEEWEATF 113 Query: 121 HISAYSYASLAKAVLPIM--NPGGGIVGMDFD----PTRAMPAYNWMTVAKSALESVNRF 174 +++ + +++V M G IV + + P +M AY +K+A + Sbjct: 114 SVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYA---SSKAAAVMFTKC 170 Query: 175 VAREAGQFGVRSNLVAAGPIRTLAMAAIVGGALGDDAGAQ-IQLLEEGWDQRAPLGWNMK 233 + E ++ +R N+V+ G T ++ ++ Q I+ E + PL + Sbjct: 171 LGLELAEYNIRCNIVSPGSTETDMQWSL---WADENGAEQVIKGSLETFKTGIPLK-KLA 226 Query: 234 DPTPVAKTVCALMSDWLPATTGTVIYADGGAS 265 P+ +A V L+S T + DGGA+ Sbjct: 227 KPSDIADAVLFLVSGQAGHITMHNLCVDGGAT 258
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 28.1 bits (62), Expect = 0.017 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 2 SEPPPPPPPGAYPGPPGGYPPPLYGGYPA--IPPVGPKNGMGTAALVVAIVGLLS 54 ++ PP P P PGP PP PA P + AA+ VGL S Sbjct: 569 AKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLAS 623
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.008 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 15/80 (18%) Query: 306 ARLAARRLLTLTDTVDDDRRPAVTALDLRPGDRVAVV----GPSGCGKTTLLMQTPGVFF 361 +L + +L A + PG + G G GK+TL+ G+ F Sbjct: 573 LQLVGKYILM-----------GHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLDF 621 Query: 362 AEDAHLFSTTVRDNLLVARG 381 D H T +D+ G Sbjct: 622 FSDTHFDIGTGKDSYEQIAG 641
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.040 Identities = 12/20 (60%), Positives = 15/20 (75%) Query: 338 VLTGPNGIGKSTLLQAILGL 357 VL G GIGKSTL+ ++GL Sbjct: 600 VLEGTGGIGKSTLINTLVGL 619
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 28.9 bits (64), Expect = 0.028 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 39 DAIANTVPEA-IKSTGKLVIGVNIPYAPNEFKDPEGKIVGFDVDL 82 D N P+A IKS +++ I + E KD +G+I ++ D Sbjct: 768 DVHVNKEPKAVIKSDSSVIVEEEINFDGTESKDEDGEIKAYEWDF 812
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.005 Identities = 8/17 (47%), Positives = 10/17 (58%) Query: 39 VLVLVGPSGSGKSTFLR 55 +VL G G GKST + Sbjct: 598 SVVLEGTGGIGKSTLIN 614
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.5 bits (170), Expect = 4e-16 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%) Query: 6 ITVMVVDDHPIWRDAVARDLADGGFEVVATADGVASAKRRAAVVLPDVVLMDMRLGDGDG 65 T++V DD R + + L+ G++V T++ A+ R A D+V+ D+ + D + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNA-ATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 66 AQATAEVLAVSPSTRILVLSASDERDDVLEAVKAGATGYLVKSASKQELEDAVR 119 + P +LV+SA + ++A + GA YL K EL + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 40.0 bits (93), Expect = 1e-05 Identities = 16/58 (27%), Positives = 19/58 (32%) Query: 39 EQPPQAVVPQPAAPPSGAPPQPIYPPQPAPRPAPSYRPQYPPPPPTPFQPWPNTVPPR 96 +PPQAV P P P P P P +P+ P P P R Sbjct: 55 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 36.1 bits (83), Expect = 2e-04 Identities = 15/62 (24%), Positives = 19/62 (30%) Query: 39 EQPPQAVVPQPAAPPSGAPPQPIYPPQPAPRPAPSYRPQYPPPPPTPFQPWPNTVPPRLK 98 QP + PA QP P P P P P+ P P + P+ K Sbjct: 42 AQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 101 Query: 99 KE 100 Sbjct: 102 PV 103 Score = 33.0 bits (75), Expect = 0.003 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 39 EQPPQAVVPQPAAPPSGAP-PQPIYPPQPAPRPAPSYRPQYPPPPPTPFQPWPNTVPPRL 97 E P P+ A P P+P P+P + + P P P+ NT P RL Sbjct: 74 EPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARL 133
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 107 bits (269), Expect = 1e-32 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 2/142 (1%) Query: 22 ELSAALQRVLVDLIELHLQGKQAHWNVVGTNFRDLHLQLDEVVDFAREASDTVAERLRAL 81 + +L L + L+ + + HW V G +F LH + +E+ D A E DT+AERL A+ Sbjct: 12 LVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAI 71 Query: 82 DAVPDGRSDTVAATTSLPEFPAYEHSTGEVVDLITARIYAVVDTLRTVHDGVDAE-DPST 140 P S+ + ++ E+V + + + V + D +T Sbjct: 72 GGQPVATVKEYTEHASITDGGNETSAS-EMVQALVNDYKQISSESKFVIGLAEENQDNAT 130 Query: 141 ADILHQLIDGLEKLAWLLKSEN 162 AD+ LI+ +EK W+L S Sbjct: 131 ADLFVGLIEEVEKQVWMLSSYL 152
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.3 bits (193), Expect = 4e-19 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 17 RVLIAEDEALIRLDLAEMLREEGYEIVGEAGDGQEAVDLAESLNPDLVIMDVKMPRRDGI 76 +L+A+D+A IR L + L GY++ + + + DLV+ DV MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 77 DAAAEIASKRI-APIVILTAFSQRELVERARDAGAMAYLVKPFSITDLIPAIEVAVSR 133 D I R P+++++A + +A + GA YL KPF +T+LI I A++ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 105 bits (264), Expect = 9e-30 Identities = 67/250 (26%), Positives = 109/250 (43%), Gaps = 9/250 (3%) Query: 4 VLVAGGATGIGAAAVRAFRRRGDRVLLADRNEEAGKALVAEDLPGEASF---LRSDFTES 60 + G A GIG A R +G + D N E V L EA +D +S Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEK-LEKVVSSLKAEARHAEAFPADVRDS 69 Query: 61 DAAQAAVEAAVSFNVGSLDAVFYNAAVLEARPLGEWTAQDWDRSAAVNLRAPFLMAQAAA 120 AA + A + +G +D + A VL + + ++W+ + +VN F +++ + Sbjct: 70 -AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 121 PHLRKSDTGRVILTSSTGAFRGHAGMPAYHATKAGLLGMVRALADELGPDGVTVNAVCPG 180 ++ +G ++ S A M AY ++KA + + L EL + N V PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 181 WVDTPFNSAFW----GHQQDPARALEELTEQIPLRRQADPDDMTGLLLFLASSASSYITG 236 +T + W G +Q +LE IPL++ A P D+ +LFL S + +IT Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 237 QALVIDGGYT 246 L +DGG T Sbjct: 249 HNLCVDGGAT 258
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 129 bits (325), Expect = 2e-38 Identities = 79/258 (30%), Positives = 127/258 (49%), Gaps = 3/258 (1%) Query: 13 LEGRTAVVTGAARGIGLSIATRLAAHGARVALLDLDDEQTQAAARQVQESTGSRTLGLAA 72 +EG+ A +TGAA+GIG ++A LA+ GA +A +D + E+ ++ A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEK-LEKVVSSLKAEARHAEAFPA 64 Query: 73 DVTDAARLREAADAIETDLGPVNVVVPNAGILVLKTALDIEPQEFDAVLRVNLFGAFLTA 132 DV D+A + E IE ++GP++++V AG+L + +E++A VN G F + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 133 VEFARRMPRSGADGRIIFTSSLFGLRGGVGNAAYAASKFGILGMAQSMAAELAPSGIRVN 192 ++ M G I+ S AAYA+SK + + + ELA IR N Sbjct: 125 RSVSKYM-MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 193 SVCPGQIESAMIRQLFEDRAAANGTTPEGERSAFARHIPLGGLGDPDDVANTYVYLASPL 252 V PG E+ M L+ D A +G F IPL L P D+A+ ++L S Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVI-KGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 253 SSYVTGQHIVVDGGWSVG 270 + ++T ++ VDGG ++G Sbjct: 243 AGHITMHNLCVDGGATLG 260
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 102 bits (255), Expect = 4e-28 Identities = 72/257 (28%), Positives = 112/257 (43%), Gaps = 18/257 (7%) Query: 15 LSGKRGLVTGGTRGIGMMIARGLLQAGARVLISSRNAEACARAQEQLSEFGDVW-AVPAD 73 + GK +TG +GIG +AR L GA + N E + L A PAD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 74 LSRHDECERLAHLATADSGGLDILVNNAGAMWDEPLATFPDQAWDTVIDLNLKSPFWLVQ 133 + + + + G +DILVN AG + + + D+ W+ +N F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 134 ALLPALRDAGTADDPARIINIGSIAAIHIPNRPNYSYSSSKAALHQLTRVLAKELGPQHI 193 ++ + D + I+ +GS A +P +Y+SSKAA T+ L EL +I Sbjct: 126 SVSKYMMDRRSGS----IVTVGSNPA-GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 194 AVNAVAPGPFPSTMMAATL--DEFGEA--IAASA-------PLRRIGRDDDMAGVAVFLA 242 N V+PG T M +L DE G I S PL+++ + D+A +FL Sbjct: 181 RCNIVSPGS-TETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 243 SRAGAYLTGAIVPVDGG 259 S ++T + VDGG Sbjct: 240 SGQAGHITMHNLCVDGG 256
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.009 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 21 LEVDHAALDGPRGEWQTAEETSARAQNQLSIVLERLETNAERRSADEAALQAAIEQQAEL 80 L++ + + Q++ + Q + I+ +E N + E+ Sbjct: 125 LKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEV 184 Query: 81 KRAIKTSAEQRETLRKARSKAQREVDAARKQAQAAEARYDEALLVEVLAAQKSK 134 R EQ T + K Q+E++ +K+A+ + +KS+ Sbjct: 185 LRLTSLIKEQFSTWQNQ--KYQKELNLDKKRAERLTVLARINRYENLSRVEKSR 236
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 113 bits (283), Expect = 4e-29 Identities = 77/341 (22%), Positives = 152/341 (44%), Gaps = 20/341 (5%) Query: 34 VQLVAAMDGPVAVFALPRIQNELGLSDATRAWVITAYLLTFGGLILLGGRLGDAFGRKRV 93 + + ++ V +LP I N+ A+ WV TA++LTF + G+L D G KR+ Sbjct: 22 LSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRL 81 Query: 94 FIAGVALFTFASVLCGIAWNGPS-LVVARLLHGVAAAIVTPTCTALLATTFPKGPARNAA 152 + G+ + F SV+ + + S L++AR + G AA ++A PK R A Sbjct: 82 LLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK-ENRGKA 140 Query: 153 IAVFGALASIGAVLGLVAGGLLTE-ISWRLAFLVNVP-IGILVICVARGMLRETQRERMR 210 + G++ ++G +G GG++ I W ++L+ +P I I+ + +L++ R + Sbjct: 141 FGLIGSIVAMGEGVGPAIGGMIAHYIHW--SYLLLIPMITIITVPFLMKLLKKEVRIKGH 198 Query: 211 LDVAGAVLATLTITATVFGLSMGPEKGWLSATTLGLGFAALAALLAFIFVE--RTAENPI 268 D+ G +L ++ I + L T+ + F ++ L IFV+ R +P Sbjct: 199 FDIKGIILMSVGIVFFM-----------LFTTSYSISFLIVSVLSFLIFVKHIRKVTDPF 247 Query: 269 LPFSLFRDRDRIACFVAVFLCTGTSFTLTVLVAFYVQNIMGLSPAQAGVGFI-PIAVAMA 327 + L ++ + + + GT +V + ++++ LS A+ G I P +++ Sbjct: 248 VDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVI 307 Query: 328 LGTAVSSRVVMSLAPRLVVIGGCTLVLGAMVFGGLTLHGDM 368 + + +V P V+ G T + + + L Sbjct: 308 IFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTS 348
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 42.1 bits (99), Expect = 1e-05 Identities = 38/282 (13%), Positives = 92/282 (32%), Gaps = 30/282 (10%) Query: 149 ASTNASVTAIRHIVENTQA--PEGVKAYVTGPSAIATDVGESGNRTVILVTAVSVAVICV 206 A+ + AI+ + Q P+G+K + + V+ ++ ++ + Sbjct: 297 ANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFV---QLSIHEVVKTLFEAIMLVFL 353 Query: 207 MLLLVYRSVTTVLLLLVVVGIQLQAARGIVALLGHHGMLGLTTFGVNLL----VALCIAA 262 ++ L +++ L+ + V + L I+A G + +N L + L I Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFG---------YSINTLTMFGMVLAIGL 404 Query: 263 GTDYGIFFIGRYQEARQ-AGEDTVSAYFTTYHGVAKVVLASGLTIAGALYCLSF---TRL 318 D I + + A + + ++ + ++ ++F + Sbjct: 405 LVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 319 PLFNALALPTAIGVIVAVAVALTLFPA----VLAAGSRFGLFDPKR--NLQVRGWRRLGT 372 ++ ++ + ++V VAL L PA +L S + + Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVN 524 Query: 373 AIVRWPAPILVAT--MAITLLGLLALPGFKPSYNDQKYLPHD 412 IL +T + ++A +LP + Sbjct: 525 HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEE 566 Score = 38.3 bits (89), Expect = 2e-04 Identities = 39/210 (18%), Positives = 81/210 (38%), Gaps = 30/210 (14%) Query: 723 ARVAEIKSAAEEALKGTPLEGSTIYLTGTAAITKDMVVGSEYDLMIAVVAAICLIFIVML 782 A++AE++ + +K +T ++ + L A++ L+F+VM Sbjct: 308 AKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVV-------KTLFEAIM----LVFLVMY 356 Query: 783 IMTRSLVAATVIVGTVLISLGAAFGVSVFVWQYVIGVQIHWAVLVMTVITL-LAVGS--D 839 + +++ A + V + L F + G I+ +T+ + LA+G D Sbjct: 357 LFLQNMRATLIPTIAVPVVLLGTFAILAAF-----GYSIN----TLTMFGMVLAIGLLVD 407 Query: 840 YNLLLV---ARIKDELGAGINTAIIRAMGGTGKVVTTAGLVFAATMGSMVV---SDLRSI 893 +++V R+ E A ++M + +V +A M S Sbjct: 408 DAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIY 467 Query: 894 GQVGTTIALGLMFDTLIVRAFMTPSIAALL 923 Q TI + +++V +TP++ A L Sbjct: 468 RQFSITIVSAMAL-SVLVALILTPALCATL 496 Score = 32.5 bits (74), Expect = 0.009 Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 30/223 (13%) Query: 717 ASPEGIARVAEIKSAAEEALKGTPLEGSTIYLTGTAAITKDMVVGSEYDLMIAVVAAICL 776 + + E P G TG + + S V + + Sbjct: 828 GEAAPGTSSGDAMALMENLASKLP-AGIGYDWTGMSYQERL----SGNQAPALVAISFVV 882 Query: 777 IFIVMLIMTRSLVAATVIVGTVLISLGAAFGVSVFVWQYVIGVQIHWAVLVMTVITLLAV 836 +F+ + + S ++ V + + V V + + + +V ++T + + Sbjct: 883 VFLCLAALYESWSIPVSVMLVVPLGI-----VGVLLAATLFNQKNDVYFMV-GLLTTIGL 936 Query: 837 GSDYNLLLVARIKDEL---GAGINTAIIRA---------MGGTGKVVTTAGLVFAATMGS 884 + +L+V KD + G G+ A + A M ++ L + GS Sbjct: 937 SAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGS 996 Query: 885 MVVSDLRSIGQVGTTIALGLMFDTLIVRAFMTPSIAALLGRWF 927 + + G + G++ TL+ F P ++ R F Sbjct: 997 GAQNAV------GIGVMGGMVSATLLA-IFFVPVFFVVIRRCF 1032
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 50.2 bits (120), Expect = 4e-08 Identities = 47/268 (17%), Positives = 100/268 (37%), Gaps = 36/268 (13%) Query: 152 VESVAAVRAIVDRLPP--PPGFSVYVTGAAPLLADMQHSGETSILKMTLIGALIIFVVLM 209 +++ A++A + L P P G V Q S ++K +++F+V+ Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFV--QLSIHE-VVKTLFEAIMLVFLVMY 356 Query: 210 IVYRSVVTVVALLITVGIELFAARGIVAFLGHHEVFLLSTFAINL--LVALAMAAGT--D 265 + +++ + I V + L I+A G ++IN + + +A G D Sbjct: 357 LFLQNMRATLIPTIAVPVVLLGTFAILAAFG---------YSINTLTMFGMVLAIGLLVD 407 Query: 266 YGIFFFGR-YQEARNSGEDRETAYYTTFRGVAPVVLGSGLTIAGALMCLSF---TRMPIF 321 I + + A + + ++G + ++ + ++F + I+ Sbjct: 408 DAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIY 467 Query: 322 QTIGMPCAVGMLVAVAAALTLVPAVL-------------TIGGRVGLFDPTRAINVRRWR 368 + + M ++V AL L PA+ GG G F+ T +V + Sbjct: 468 RQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYT 527 Query: 369 RIGTAIVRWPGPILVATLAVTLIGLIAL 396 I+ G L+ A+ + G++ L Sbjct: 528 NSVGKILGSTGRYLLI-YALIVAGMVVL 554 Score = 44.1 bits (104), Expect = 3e-06 Identities = 35/177 (19%), Positives = 72/177 (40%), Gaps = 23/177 (12%) Query: 756 FEEGSRYDLLIAGVSALCLIFLIMLLITRGLVASVVIVGTVALSLGASFGLSVLIWQYIF 815 F + S ++++ A+ L+FL+M L + + A+++ V + L +F + F Sbjct: 332 FVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAI-----LAAF 386 Query: 816 GIPLHWMVLPMAVIVLLGVGSDYNLLLV---SRMKEEIGAGINTGIIRAMGGTGKVVTNA 872 G ++ + + +++ +G+ D +++V R+ E ++M + Sbjct: 387 GYSINTLTM-FGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGI 445 Query: 873 GLVFAFTMAAMVFSDLMVIG--------QVGTTIGLGLLFDTLVVRAFLTPAIAALL 921 +V + VF + G Q TI + LV LTPA+ A L Sbjct: 446 AMVL-----SAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVAL-ILTPALCATL 496 Score = 38.7 bits (90), Expect = 1e-04 Identities = 37/205 (18%), Positives = 77/205 (37%), Gaps = 12/205 (5%) Query: 147 GSSAGVESVAAVRAIVDRLPPPPGFSVYVTGAAPLLADMQHSGETSILKMTLIGALIIFV 206 G+S+G +++A + + +LP G TG ++ + + I +++F+ Sbjct: 833 GTSSG-DAMALMENLASKLPA--GIGYDWTG----MSYQERLSGNQAPALVAISFVVVFL 885 Query: 207 VLMIVYRSVVTVVALLITVGIELFAARGIVAFLGHHEVFLLSTFAINLLVALAMAAGTDY 266 L +Y S V++++ V G++ F + LL + ++A Sbjct: 886 CLAALYESWSIPVSVMLVVP---LGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAI 942 Query: 267 GIFFFGRYQEARNSGEDRETAYYTTFRGVAPVVLGSGLTIAGAL-MCLSF-TRMPIFQTI 324 I F + + E + P+++ S I G L + +S + Sbjct: 943 LIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAV 1002 Query: 325 GMPCAVGMLVAVAAALTLVPAVLTI 349 G+ GM+ A A+ VP + Sbjct: 1003 GIGVMGGMVSATLLAIFFVPVFFVV 1027
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 40.7 bits (95), Expect = 3e-05 Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 2/82 (2%) Query: 1309 RSPRSAVAPPVPMARVSA--PVAPPPVVPAPRPVTPPKSPPPFDPPVQAPPAAPAAPTAP 1366 + P V P P P P V+ P+P PK P P Sbjct: 67 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPA 126 Query: 1367 TSREPLWSRAQLETLAGGNISE 1388 + E + A S+ Sbjct: 127 SPFENTAPARPTSSTATAATSK 148 Score = 34.6 bits (79), Expect = 0.004 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 3/66 (4%) Query: 1311 PRSAVAPPVPMARVSAPVAPPPVVPAPRPVTPPKSPPPFDPPVQAPPAAPAAPTAPTSRE 1370 P++ PP P+ P P P PV K P P P + Sbjct: 63 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK---PKPKPKPVKKVEQPKRDVK 119 Query: 1371 PLWSRA 1376 P+ SR Sbjct: 120 PVESRP 125 Score = 33.8 bits (77), Expect = 0.006 Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 1/62 (1%) Query: 1311 PRSAVAPPVPMARVS-APVAPPPVVPAPRPVTPPKSPPPFDPPVQAPPAAPAAPTAPTSR 1369 A P + PV P P P P P ++P + P P P Sbjct: 55 VAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQP 114 Query: 1370 EP 1371 + Sbjct: 115 KR 116
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.4 bits (99), Expect = 2e-05 Identities = 42/213 (19%), Positives = 69/213 (32%), Gaps = 20/213 (9%) Query: 936 PVDGTTSITPKRVRAARPATPVAAAEGSRMTHVVQRMESPAPAPVEVSAPAVHVREAEPQ 995 VD T TP ++A P+ P E +R V P PAP S V E Q Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIAR----VDEAPVPPPAPATPSETTETVAENSKQ 1046 Query: 996 EAA--------PEVHVPAPAAMVSPDAWSVIDRIQQ-ETAEQHQRYLEVMTQSHQAFLDV 1046 E+ + +V Q E A+ E T + V Sbjct: 1047 ESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATV 1106 Query: 1047 SVQMMAEIVGDR--DPAPQTPRLAIKEVVQAPPSVAPAVVSSPSPAASVTLVE-QVPAPA 1103 + A++ ++ + T +++ K+ + +V P + +V + E Q Sbjct: 1107 EKEEKAKVETEKTQEVPKVTSQVSPKQ--EQSETVQPQAEPARENDPTVNIKEPQSQTNT 1164 Query: 1104 PAAVMVPSP--SPVTEPPVSTSILSPSTPVPSV 1134 A P+ S E PV+ S + Sbjct: 1165 TADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 141 bits (356), Expect = 2e-41 Identities = 78/335 (23%), Positives = 141/335 (42%), Gaps = 32/335 (9%) Query: 3 RLLVTGGAGFIGSNFVHHVITHTDHHVTVLDKLT--YAGN--RASLTGLPDTRLTFLRGD 58 + LVTG AGFIG + ++ H V +D L Y + +A L L F + D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 59 VADAELVDQLV--GNADAVVHYAAESHNDNSLDHPDPFLHSNVIGTFTLLEAVRRHG-KR 115 +AD E + L G+ + V SL++P + SN+ G +LE R + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 116 FHHVSTDEVYGDLALDDPGRFTESSPYN-PSSPYSSTKAGSDMLVRAWTRSFGVAATISN 174 + S+ VYG L P F+ + P S Y++TK ++++ ++ +G+ AT Sbjct: 121 LLYASSSSVYG-LNRKMP--FSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177 Query: 175 CSNNYGPYQHVEKFIPRQITNILCGIRPRLYGEGRNVRDWIHADDHSSAVLLILERGRI- 233 YGP+ + + + +L G +Y G+ RD+ + DD + A++ + + Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHA 237 Query: 234 -----------------GETYLIGANGEKDNRTVIELILTMMGQDADAYDRVPDRAGHDL 276 Y IG + + I+ + +G +A + +P + G L Sbjct: 238 DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKK-NMLPLQPGDVL 296 Query: 277 RYAIDPTKLRDELGWQPRYRDFAHGLAATIDWYRH 311 + D L + +G+ P G+ ++WYR Sbjct: 297 ETSADTKALYEVIGFTPE-TTVKDGVKNFVNWYRD 330
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 36.7 bits (85), Expect = 1e-04 Identities = 42/202 (20%), Positives = 68/202 (33%), Gaps = 48/202 (23%) Query: 248 DYDTIINAAAYTAVDAAETAEGRVAAWAANVTGVAALARVASAHGIT-LVHVSSDYVFDG 306 ++ + + AV + E A +N+TG + + I L++ SS V+ Sbjct: 75 HFERVFISPHRLAVRYS--LENPHAYADSNLTGFLNILEGCRHNKIQHLLYASSSSVYGL 132 Query: 307 TATRPYREDDPMA-PLGVYGQTKAAGDQIVST------VP----RHYIVRTSWVIGDGR- 354 P+ DD + P+ +Y TK A + + T +P R + V W GR Sbjct: 133 NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPW----GRP 188 Query: 355 -----NFVQTMLSLADNGVDPSVVDDQFGRLTFT--------------------PELARA 389 F + ML G V + + FT + Sbjct: 189 DMALFKFTKAML----EGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVE 244 Query: 390 IRHLTESAAPYGTYNVTGSGPI 411 S APY YN+ S P+ Sbjct: 245 TGTPAASIAPYRVYNIGNSSPV 266
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.0 bits (62), Expect = 0.045 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 4/48 (8%) Query: 9 TRFTRGITRRTSSVIWCAALLAGLSLVGPVPSSLAGSTAATTVAGVSP 56 T+ + + S I GLS AG A+ +SP Sbjct: 277 TKVLGNVGKGISQYIIAQRAAQGLSTSAAA----AGLIASAVTLAISP 320
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 35.7 bits (82), Expect = 2e-04 Identities = 26/138 (18%), Positives = 34/138 (24%) Query: 266 FVASVSVAAAMQLAPDPAAPRPTPAAETSAPFPAAAPRAVPAAPLPPAPPPPAEVVIPEV 325 + VA + + P PA S A A P A PP P PE Sbjct: 23 CIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEP 82 Query: 326 AVPVVEEAPVAEPPLAPEQAPMAETAPPDPVLPPAPVVAPPVPQERPGLLQRIRDRLSGG 385 +EAPV P+ P + P R S Sbjct: 83 IPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTA 142 Query: 386 NDESPAPAPVVPPPVPPV 403 + P V + Sbjct: 143 TAATSKPVTSVASGPRAL 160
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 46.5 bits (110), Expect = 9e-09 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 4/113 (3%) Query: 1 MPPTLPRGRPSSAAAILDTARALLDEG--RTVSLDSVAQASGLSKPGLMYHFPTKSALMD 58 M + + ILD A L + + SL +A+A+G+++ + +HF KS L Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 59 ALVD-HVVDSQERELSSFLAVPLD-QATARQRLGAYVRWALLSRHCRSDLVML 109 + + + E EL P D + R+ L + + R + ++ Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEII 113
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 61.8 bits (150), Expect = 2e-12 Identities = 66/378 (17%), Positives = 134/378 (35%), Gaps = 25/378 (6%) Query: 63 WVTTVYLVGSVMAATTVHSVLMRLGPRWAYLLGLSVFGLGSLGCAVAPSM-EALLAGRTV 121 WV T +++ + + +LG + L G+ + GS+ V S L+ R + Sbjct: 53 WVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFI 112 Query: 122 QGAAGGLLAGLGYAVINTALPSHLWTKASALVSAMWGVGTLVGPAAGGLFAQYSSWRWAF 181 QGA L V+ +P KA L+ ++ +G VGPA GG+ A Y W + Sbjct: 113 QGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL 172 Query: 182 GVLVVMTTAMSLLVPLALPGREAATPNVPRERVRIPLAGLLLLGAAALLVSAAGIPHDVR 241 + ++ + L+ L R + + G++L+ + + Sbjct: 173 LIPMITIITVPFLMKLLKKEV--------RIKGHFDIKGIILMSVGIVFF----MLFTTS 220 Query: 242 ATAGLVAAGFALVGVFLVVDRKVTAAVLPPSAWGSGPLKWIYLTLGVLMAATMV--DMYV 299 + + +F+ RKVT + P + P I + G ++ T+ V Sbjct: 221 YSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPF-MIGVLCGGIIFGTVAGFVSMV 279 Query: 300 PLFGQRLAHLSPVAAG--FLAAGLAIGWTVGEISSASLSRQRLIVRIVAVAPVVMAVGLA 357 P + + LS G + G G I + R+ + ++ + ++V Sbjct: 280 PYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGP-LYVLNIGVTFLSVSFL 338 Query: 358 IGALTQRDDASPAVVAAWAAGLVVSGAGIGIAWPHLSAWAMGKVDDPAEGPAAAAAINTV 417 + + + V+ G + + + E A + +N Sbjct: 339 TASFL---LETTSWFMTIIIVFVLGGLS---FTKTVISTIVSSSLKQQEAGAGMSLLNFT 392 Query: 418 QVISAAFGAALAGVVVNV 435 +S G A+ G ++++ Sbjct: 393 SFLSEGTGIAIVGGLLSI 410
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 29.9 bits (67), Expect = 0.034 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 7/91 (7%) Query: 210 SFTRGSFRVRGDTVEIIPSYEELAVRIEYFGDEIEALYYMHPLTGDVVRKVDSLRVFPAT 269 + R V +V+ + YEE I A+ M PL G+ V +VD F Sbjct: 72 AQLRSMVHVHVASVDQLT-YEEFIRSIPTPS--TLAVITMDPLKGNAVLEVDPSITFSII 128 Query: 270 HYVAGPERMAAAI----SSIEKELEERLAEL 296 + G AA + + IE + E + Sbjct: 129 DRLFGGTGQAAKVQRDLTDIENSVMEGVIVR 159
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 28.0 bits (62), Expect = 0.020 Identities = 16/37 (43%), Positives = 22/37 (59%) Query: 7 TGAVVAGAAVALSAMAVFPGSASAQPDPQPEVETPAP 43 TG +V GA V +S +AV G+ + Q P+V PAP Sbjct: 269 TGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAP 305
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 61.3 bits (149), Expect = 8e-12 Identities = 21/52 (40%), Positives = 30/52 (57%) Query: 735 IGALVTDIGSSVSHGAVVAREYGLPCVVNTLVATQVLKTGDHVRVDGDRGLV 786 + TDIG SH A+++R +P VV T T+ ++ GD V VDG G+V Sbjct: 177 VKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIV 228
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 55.2 bits (133), Expect = 1e-10 Identities = 31/130 (23%), Positives = 45/130 (34%), Gaps = 17/130 (13%) Query: 1 MKVLITGGTGFVGAWTAKAAQDAGHEVRFL---------VRSPERLTTSAERIGVDIADH 51 MK L+TG GF+G +K +AGH+V + RL E + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARL----ELLAQPGFQF 56 Query: 52 VVGDIADGEATAAALD--GCDAVIHCAAM--VSTDPSRADEMLHTNLEGARNVLGGAVRA 107 D+AD E + V V +NL G N+L G Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 108 GIDPIVHVSS 117 I +++ SS Sbjct: 117 KIQHLLYASS 126
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 3e-12 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 12/157 (7%) Query: 20 DAVLDATRTLLVTRGYSATSIDLIAATAKVSRPAIYRRWRSKAHLIHEAA---FPDLGPA 76 +LD L +G S+TS+ IA A V+R AIY ++ K+ L E ++G Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGEL 73 Query: 77 PCE---DDIAAEITRLCRGALLMYADPVVREAVPGLLHDLRLEPAM--RRLINDRLEAAA 131 E ++ L + + V E L+ + + + + + Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNL 133 Query: 132 ----RRQLARQLADGVESGTVRPAVNADSVMDVVAGA 164 ++ + L +E+ + + ++ G Sbjct: 134 CLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGY 170
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.7 bits (69), Expect = 0.029 Identities = 35/141 (24%), Positives = 45/141 (31%), Gaps = 33/141 (23%) Query: 176 TDLLVVMGANPAASQGSLLAAP------DVMGLLGAIRRRGRVIVVDPVKTATADRADEW 229 T L V AA+ SL+ AP V G++ I + + + V + AD EW Sbjct: 373 TVLASVSSGISAAATTSLVGAPVSALVGAVTGIISGILEASKQAMFEHVASKMADVIAEW 432 Query: 230 LP------ITPGTDAALLLAVSHTLFDENLVNLGTVAPYLDGVDTLRDVVAEWPPERVSE 283 G DA H F E D L E+ ER Sbjct: 433 EKKHGKNYFENGYDA------RHAAFLE------------DNFKILSQYNKEYSVERS-- 472 Query: 284 ATGIDAERIRALARELAGTPR 304 I + L ELAG R Sbjct: 473 -VLITQQHWDTLIGELAGVTR 492
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 30.1 bits (67), Expect = 0.024 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 15/72 (20%) Query: 225 EAAPGHN-----IPDEEPNTDTDVPQAEADTPEAEPDV-PDANMPQAEAAPADNKDRCPD 278 E +P N P+E P T + PE +PD+ PDAN P + P D Sbjct: 330 EVSPAENPANNPAPNENPGTRPN--------PEPDPDLNPDAN-PDTDGQPGTRPDSPAV 380 Query: 279 PRRTDTRTAAQR 290 P R + R +R Sbjct: 381 PDRPNGRHRKER 392
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 28.6 bits (64), Expect = 0.023 Identities = 11/38 (28%), Positives = 21/38 (55%) Query: 185 ILLIGLGLAVLLPVVPFALELLALRRLTAASFGTMMAL 222 + L +G+ +++PV+P L L A +G ++AL Sbjct: 14 VALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLAL 51
>cloacin#Cloacin signature. Length = 551 Score = 28.1 bits (62), Expect = 0.024 Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Query: 71 APGAAGAIPGGPAGVAGPGGAAGVIPGGPAGTAGPGGAAGVIPGGPGGAAGPAGATGAIP 130 A +G I GGP G+ G GG A G + GG +G GG+ G Sbjct: 13 AHSTSGNINGGPTGL-GVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Query: 131 GGPAGTAGPGG--AAGVIPGGPGGAAGPAGATGAIPGGPAGTA 171 GG +GT G AA V G P + AG A +A Sbjct: 72 GGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSA 114
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 45.8 bits (108), Expect = 2e-08 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 4/101 (3%) Query: 7 ILTAVVELLENDGYDAVQLREVARRSRTSLATIYKRYANRDELILAALEAWTDENRYAAV 66 IL + L G + L E+A+ + + IY + ++ +L E + Sbjct: 16 ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELEL 75 Query: 67 VGQRRAPG---ESLHEALMRLFRTLFEPWERHPAMLAAYFR 104 Q + PG L E L+ + + R ++ F Sbjct: 76 EYQAKFPGDPLSVLREILIHVLESTVTEERRR-LLMEIIFH 115
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 85.5 bits (211), Expect = 7e-22 Identities = 79/278 (28%), Positives = 121/278 (43%), Gaps = 37/278 (13%) Query: 4 LDGKVAFITGVARGQGRSHAVRLASDGADIIGIDICADIDSNGYPMASPAELQETVTLVE 63 ++GK+AFITG A+G G + A LAS GA I +D +P +L++ V+ ++ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVD------------YNPEKLEKVVSSLK 53 Query: 64 AHGGKMLASIADVRDFSAVKAAVDTGVAHFGRLDMVCANAGIAAMAFAELTDAQDLQMWT 123 A A ADVRD +A+ G +D++ AG+ L + + W Sbjct: 54 AEARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPG---LIHSLSDEEWE 110 Query: 124 DVLEVNLVGSFHTAKAAIPHLIAGERGGSIVFTSSTAGLRGFGGKGGGGLGYAASKHGIV 183 VN G F+ +++ +++ R GSIV S G YA+SK V Sbjct: 111 ATFSVNSTGVFNASRSVSKYMMD-RRSGSIVTVGSNPA----GVPRTSMAAYASSKAAAV 165 Query: 184 GLMRALSNALAPHSIRVNTVHPTAVNTMM---------AVNPAMTAFLEHYPDGGPHLQN 234 + L LA ++IR N V P + T M + LE + G Sbjct: 166 MFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG------ 219 Query: 235 PMPVG-LLEPEDISAAVAYLVSDAAKYVTGVTFPVDAG 271 +P+ L +P DI+ AV +LVS A ++T VD G Sbjct: 220 -IPLKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 94.3 bits (234), Expect = 3e-25 Identities = 75/261 (28%), Positives = 119/261 (45%), Gaps = 18/261 (6%) Query: 2 LVTGAARGMGRSHALRLAEEGADVILIDICESLPDIEYPLASREDLAETARLVSEVGRRA 61 +TGAA+G+G + A LA +GA + +D + E L + + R A Sbjct: 12 FITGAAQGIGEAVARTLASQGAHIAAVD------------YNPEKLEKVVSSLKAEARHA 59 Query: 62 ISHVVDVRDADALAAAVDDGVSKLGGLDASVANAGVLTAGTWETTTPAQWRTVVDVNLIG 121 + DVRD+ A+ ++G +D V AGVL G + + +W VN G Sbjct: 60 EAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTG 119 Query: 122 TWNTCAAALPHLVD-HGGSLVNI-SSAAGIKGTPLHTPYTASKHGVVGMSRALANELAAQ 179 +N + +++D GS+V + S+ AG+ T + Y +SK V ++ L ELA Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSM-AAYASSKAAAVMFTKCLGLELAEY 178 Query: 180 SIRVNTVHPTGVATGMRPD---SLHGLIAHTRPDLGPLFLNAMPIMMAEAVDISNAVLFL 236 +IR N V P T M+ +G + L +A+ DI++AVLFL Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 237 VSDESRYVTGLEFKVDAGVTL 257 VS ++ ++T VD G TL Sbjct: 239 VSGQAGHITMHNLCVDGGATL 259
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.3 bits (125), Expect = 1e-10 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 4/127 (3%) Query: 4 PRKGKHSDISARLRLIEATAKIMRDEGYASATSRRVAAEAGVKQALVYYYFPTMDDLFVE 63 RK K R +++ ++ +G +S + +A AGV + +Y++F DLF E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 64 VLRTGAEVSLDRMRDALTDDDPLRALWAINSDSRLTGLNTEFMALANHRKAIRVELKAYA 123 + + + ++ + + L E R+ + + Sbjct: 62 IWELSESNIGELELE--YQAKFPGDPLSVLREILIHVL--ESTVTEERRRLLMEIIFHKC 117 Query: 124 ERVRDIE 130 E V ++ Sbjct: 118 EFVGEMA 124
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 108 bits (270), Expect = 3e-30 Identities = 80/280 (28%), Positives = 131/280 (46%), Gaps = 32/280 (11%) Query: 5 VEGKVAFITGAARGQGRSHAIRLAQEGADIIAVDVCGPISENSQIAPSTPDDLAETADLI 64 +EGK+AFITGAA+G G + A LA +GA I AVD P E + S+ A A+ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVD-YNP--EKLEKVVSSLKAEARHAEAF 62 Query: 65 KGLDRRVVTAEVDVRDYAALAAAVDGGVEQLGRLDIVVANAGIGNGGQTLDKTSEADWDD 124 DVRD AA+ ++G +DI+V AG+ G + S+ +W+ Sbjct: 63 P----------ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEA 111 Query: 125 MIGVNLSGVWKSVKAAVPHLLSGGRGGSIILTSSVGGLKAYPHTGHYIAAKHGVIGLMRT 184 VN +GV+ + ++ +++ R GSI+ S Y ++K + + Sbjct: 112 TFSVNSTGVFNASRSVSKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKC 170 Query: 185 FAVELGQHSVRVNAVCPTNVNTPM-----FMNDGTMKLFRPDLAEPGPEDLKVAAQFMHV 239 +EL ++++R N V P + T M +G ++ + F Sbjct: 171 LGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGS-----------LETFKTG 219 Query: 240 LPVGWV-EPADISNAVLFLASDEARYITGVPLPVDAGSML 278 +P+ + +P+DI++AVLFL S +A +IT L VD G+ L Sbjct: 220 IPLKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGGATL 259
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.7 bits (85), Expect = 3e-04 Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Query: 606 DGATVTAGTVVVTVEAMKMEHALSAPVDGVVELLVGAGEQVKVGQLLARITAT 658 + G + + + +++ ++ V E++V GE V+ G +L ++TA Sbjct: 81 EIVATANGKLTHSGRSKEIKPIENSIVK---EIIVKEGESVRKGDVLLKLTAL 130
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.0 bits (150), Expect = 4e-14 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 2/141 (1%) Query: 8 SRRSKAKSDRRSQLAAAAERLIAEHGYLAVRLEDIGAAAGVSGPAIYRHFPNKEALLVEL 67 + + + R + A RL ++ G + L +I AAGV+ AIY HF +K L E+ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 68 LVGVSTRLLAGAEDVAGRAADADSA-LEGLIDFHLDFAFAEADLIRIQDRDLGNLPPAAK 126 + + + + + L ++ L+ E + + + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 127 RQ-VRRKQRQYVEIWVDVLRR 146 V++ QR D + + Sbjct: 123 MAVVQQAQRNLCLESYDRIEQ 143
>PilS_PF08805#PilS N terminal Length = 185 Score = 24.1 bits (52), Expect = 0.027 Identities = 4/23 (17%), Positives = 13/23 (56%) Query: 17 MSILTYIGVVLLVIGAVFWILGS 39 M +L +GV++++ + + + Sbjct: 31 MEVLLVVGVIVVLAASAYKLYSM 53
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 29.4 bits (66), Expect = 0.012 Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 98 KSPRWLWVVAGVSVVVIIGLVIALVIV 124 +S + WVVAGV+ + V+A+ + Sbjct: 30 RSKKLAWVVAGVAGALATAGVVAVAAL 56
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 77.0 bits (189), Expect = 1e-18 Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 3/182 (1%) Query: 21 AVVTGASQNIGEALAIELARRGHNLIITARREEVLEALANRLREQYGVTVEVRAVDLADP 80 A +TGA+Q IGEA+A LA +G ++ E LE + + L+ + E D+ D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE-ARHAEAFPADVRDS 69 Query: 81 AARATFCDELAGR--DISILCANAGTATFGPVAALDPAEERKQVQLNVLGVHDLVLAVLP 138 AA + I IL AG G + +L E +N GV + +V Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 139 GMVRRRAGGILISGSAAGNSPIPNNATYAATKAFANTFSESLRGEVKSAGVHVTVLAPGP 198 M+ RR+G I+ GS P + A YA++KA A F++ L E+ + +++PG Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 199 VR 200 Sbjct: 190 TE 191
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 31.9 bits (72), Expect = 0.005 Identities = 13/47 (27%), Positives = 16/47 (34%) Query: 444 AYERLAARMAPPPPVVPAPAPQTFPPFDIPPPFDVPPMPAPVEHVEP 490 + + PP V P P P P PP APV +P Sbjct: 46 SVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP 92
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.2 bits (135), Expect = 6e-12 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 8/139 (5%) Query: 1 MASPRRIGAPDAKNRVVLLDAAEQLLIEEGYAAVTSRRVADRAGLKPQLVHYYFRTMEDL 60 MA + A + + +LD A +L ++G ++ + +A AG+ ++++F+ DL Sbjct: 1 MARKTKQEAQETRQH--ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDL 58 Query: 61 FLAVFHRRAEE-GLAVLATALQSPQPLWALWRFSTAPEATRLTMEFMGLANHRKALRAEI 119 F ++ G L + P ++ R E +E R+ L I Sbjct: 59 FSEIWELSESNIGELELEYQAKFPGDPLSVLR-----EILIHVLESTVTEERRRLLMEII 113 Query: 120 VYYAERFRQEQNRAIADAL 138 + E + A Sbjct: 114 FHKCEFVGEMAVVQQAQRN 132
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 27.6 bits (61), Expect = 0.019 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 6/88 (6%) Query: 29 AAAQPPLRHIQYTVGASQDIAN-AEIYWRQIDPPDWGAYSHNPY-----EFTPNVEANLG 82 AAQPPL + + N A I + DP + G NP + PN Sbjct: 164 QAAQPPLNDQKRAAARIAWLKNCAGIDYMVKDPNNPGHMMVNPVLLNIPQGNPNPVGQPP 223 Query: 83 PNQAWVHETWLADPDQWAMVVVGLPAQS 110 + + +QW +VVGL A S Sbjct: 224 QRANQPANFAIHNHEQWRSLVVGLAALS 251
>PERTACTIN#Pertactin signature. Length = 922 Score = 29.3 bits (65), Expect = 0.044 Identities = 23/78 (29%), Positives = 30/78 (38%) Query: 454 PPFPVGAPAPMVPGAPAPAQPPILPPAPLPPGQGPLMPGQAVPVAPSAFDGNESGGPSVA 513 PP P AP P P P QPP P P PP P P P+ + + + +V Sbjct: 568 PPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAAANAAVN 627 Query: 514 TAQYDPQTGQYVAPDGAL 531 T + + A AL Sbjct: 628 TGGVGLASTLWYAESNAL 645
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 34.2 bits (78), Expect = 8e-04 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 368 PPPAEAIPAPPEGAPPL-PAAQPLLPVVPQPPAAPWLPQSQPITGDQIFAGPYGAPAPAP 426 P E IP PP+ AP + +P P+P P+ + A P+ APA Sbjct: 77 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPAR 136 Query: 427 VPPAAPAAAPAVPTPG 442 + AA + P Sbjct: 137 PTSSTATAATSKPVTS 152 Score = 30.3 bits (68), Expect = 0.014 Identities = 15/81 (18%), Positives = 19/81 (23%), Gaps = 3/81 (3%) Query: 365 GVAPPPAEAIPAPPEGAPPLPAAQPLLPVVPQPPAAPWLPQSQPITGDQIFAGPYGAPAP 424 PP P P P P + V+ +P P P Sbjct: 66 VQPPPEPVVEPEPEPEPIPEPPKEA-PVVIEKPKPKP--KPKPKPVKKVEQPKRDVKPVE 122 Query: 425 APVPPAAPAAAPAVPTPGGGG 445 + APA PT Sbjct: 123 SRPASPFENTAPARPTSSTAT 143 Score = 28.8 bits (64), Expect = 0.037 Identities = 15/81 (18%), Positives = 20/81 (24%), Gaps = 15/81 (18%) Query: 364 IGVAPPPAEAIPAPPEG-APPLPAAQPLLPVV----PQPPAAPWLPQSQPITGDQIFAGP 418 I V + P PP P +P P A + + +P Sbjct: 50 ISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP-------- 101 Query: 419 YGAPAPAPVPPAAPAAAPAVP 439 P P PV P Sbjct: 102 --KPKPKPVKKVEQPKRDVKP 120
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 35.0 bits (80), Expect = 5e-04 Identities = 22/101 (21%), Positives = 29/101 (28%), Gaps = 5/101 (4%) Query: 399 PETPPTVSAYVGSGDVPPPPGWQAPP----GPPGIYQPDPDAPATPSPALFPGAPIPGPP 454 P P +V V D+ PP Q PP P +P P+ P + P P P Sbjct: 46 PAQPISV-TMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK 104 Query: 455 NILSNIPAQPQPQSVDGLLLPPQGPAGPPTGTPGGPPPSAP 495 QP+ P P +A Sbjct: 105 PKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAA 145
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 61.0 bits (148), Expect = 7e-12 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 14/143 (9%) Query: 4 LLRIATAGSVDDGKSTLIGRLLFDSKAVMEDQLAAVERTSKERGHDYTDLALVTDGLRAE 63 ++ I VD GK+TL LL++S A+ +L +V++ + TD E Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAI--TELGSVDKGTT-----------RTDNTLLE 49 Query: 64 REQGITIDVAYRYFATAKRKFIIADTPGHIQYTRNMVTGTSTAQLAIVLVDARHGLLEQS 123 R++GITI F K I DTPGH+ + + S AI+L+ A+ G+ Q+ Sbjct: 50 RQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQT 109 Query: 124 RRHAFLASLLGIQHIVLAVNKMD 146 R +GI I +NK+D Sbjct: 110 RILFHALRKMGIPTIFF-INKID 131
>cloacin#Cloacin signature. Length = 551 Score = 32.8 bits (74), Expect = 0.004 Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 16/100 (16%) Query: 249 WPADSRPYIGGSTDNSLLQLALGYNGLQRMTGGGGMPGGGFGGPGGPDGPGGPGGAAAPA 308 W +++ P+ GGS +G+ G G GGG G GG G GG A A Sbjct: 39 WSSENNPWGGGSG-----------SGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAP 87 Query: 309 GAHLFFG-GDPGITRLFGASMGAEASWLLPAALIGLVAGL 347 A F PG L S+ A A L AA+ ++A L Sbjct: 88 VAFGFPALSTPGAGGL-AVSISAGA---LSAAIADIMAAL 123
>PF06580#Sensor histidine kinase Length = 349 Score = 34.8 bits (80), Expect = 7e-04 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 22/84 (26%) Query: 428 AVGDTGDVVLTVLDDGPGIPSWLQPEVFERFARGDSSRARRGGSSTGLGLAIVAAVVRAH 487 D G V L V + G + STG GL V ++ Sbjct: 285 GTKDNGTVTLEVENTGSLA-------------------LKNTKESTGTGLQNVRERLQML 325 Query: 488 HG---TIEVHSRPGRTEFVVRLPG 508 +G I++ + G+ +V +PG Sbjct: 326 YGTEAQIKLSEKQGKVNAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 101 bits (254), Expect = 7e-27 Identities = 32/119 (26%), Positives = 64/119 (53%) Query: 37 IHVLVVDDEAVLAELVSMALRYEGWEISTAGDGATAIALAKQTPPDVVVLDVMLPDMSGL 96 +LV DD+A + +++ AL G+++ + AT D+VV DV++PD + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 97 EVLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRT 155 ++L ++++ P LP+L+++A+++ I G DY+ KPF + E++ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 157 bits (398), Expect = 5e-44 Identities = 83/412 (20%), Positives = 179/412 (43%), Gaps = 20/412 (4%) Query: 18 LWALLIGFFMILVDVTIVSVANPAIMASLGADYDAVIWVTSAYLLAYAVPLLIAGRLGDR 77 +W ++ FF +L + +++V+ P I + WV +A++L +++ + G+L D+ Sbjct: 17 IWLCILSFFSVL-NEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 78 YGPKNLYILGLAVFTAASLGCGLSDT-IGMLVAARVVQGVGAALLTPQTMTVITRTFPPQ 136 G K L + G+ + S+ + + +L+ AR +QG GAA M V+ R P + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 137 RRGVAMSVWGATAGVATLVGPLAGGLLVDHLGWQWIFIVNVPIGVVGIAMAIWLVPSLPT 196 RG A + G+ + VGP GG++ ++ W ++ ++ + I ++ + + L+ Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKK-EV 193 Query: 197 QQNQRLDLPGVVLSGVAMFLIVFGLQEGQSHDWALWIWATIVVGAAVMGAFLYWQSVNTG 256 + D+ G++L V + + + + ++V F+ Sbjct: 194 RIKGHFDIKGIILMSVGIVFFMLFTT--------SYSISFLIVSVLSFLIFVKHIR-KVT 244 Query: 257 QSLIPLIIFRDRNFSMSNL--GIATMGFVATSMILPLMFYAQSVCGLSPTQA-ALLTAPM 313 + + ++ F + L GI ++P M + V LS + +++ P Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMM--KDVHQLSTAEIGSVIIFPG 302 Query: 314 AVATGVLAPFVGRLVDRSHPSAVVGFGFSLMAIGLTWLSIEMTPATPIWRLVLPLTAMGV 373 ++ + G LVDR P V+ G + +++ +L+ T W + + + + Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS--FLTASFLLETTSWFMTIIIVFVLG 360 Query: 374 AMAFIWSPLAATATRNLPPQLAGAGSGVYNTTRQVGSVLGSAGMAALMTSQL 425 ++F + ++ + +L Q AGAG + N T + G A + L++ L Sbjct: 361 GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPL 412
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 67.2 bits (164), Expect = 2e-14 Identities = 79/323 (24%), Positives = 127/323 (39%), Gaps = 19/323 (5%) Query: 2 IFVLGLLVALGPLTIDMYLPALPKIAEELHVSSSLAQLTLTGTLAGLAIGQLVIGP---- 57 + V+ VAL + I + +P LP + +L S+ + LA A+ Q P Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGI-LLALYALMQFACAPVLGA 65 Query: 58 LSDSLGRRKPLFAGIVLHMLASLLCLFAPNILVLGIARGLQGMGAAAGMVVAIAVVGDLY 117 LSD GRR L + + + AP + VL I R + G+ A G V A + D+ Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIADIT 124 Query: 118 KDNAAATVMSRLMLVLGVAPVLAPSLGAAVLLHGSWHWVFAALVVLAGALLVMAVFLLPE 177 + A + G V P LG ++ S H F A L G + FLLPE Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLG-GLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 178 TLPVGHRRPLKVRGIAA-TYLELVRDVRFVILVLIAALGMSGLFAYIAGASFVLQG--RF 234 + G RRPL+ + R + V ++ M L + A +V+ G RF Sbjct: 184 SHK-GERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQ-LVGQVPAALWVIFGEDRF 241 Query: 235 GLDQTAFALVF-GAGAVALIGTTQLNVVLLKRFRPQQIMMWALVAASVFGAVFIAVAAAR 293 D T + G + + + + R ++ +M + A G + +A A Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGM-IADGTGYILLAFA--- 297 Query: 294 IGGLYGFVLPVWAILAAMGLVIP 316 P+ +LA+ G+ +P Sbjct: 298 --TRGWMAFPIMVLLASGGIGMP 318
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 35.3 bits (81), Expect = 0.001 Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 8/102 (7%) Query: 21 VDYSPEPTNDAPSGGANRAAASGNGKPAKTPTAPPEPAPAPKPANTNGGSAAPAKSDKPS 80 V PEP + P P P+P P PKP + K Sbjct: 66 VQPPPEPVVE-PEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP-------VKKVEQPKRD 117 Query: 81 GTSAKTPEKTPAKSPEKAPEKASEKAEAKSAPAPAKSKAATP 122 ++ +P ++ A +S A S P + + Sbjct: 118 VKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRA 159 Score = 35.0 bits (80), Expect = 0.001 Identities = 19/106 (17%), Positives = 27/106 (25%), Gaps = 8/106 (7%) Query: 45 GKPAKTPTAPPEPAPAPKPANTNGGSAAPAKSDKPSGTSAKTPEKTPAKSPEKAPEKASE 104 +P P PEP P P P A K K K +K + + Sbjct: 66 VQPPPEPVVEPEPEPEPIPEPP-----KEAPVVIE---KPKPKPKPKPKPVKKVEQPKRD 117 Query: 105 KAEAKSAPAPAKSKAATPAADGDESQILRGAAAAVVKNMSASLDVP 150 +S PA A + V + +L Sbjct: 118 VKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRN 163 Score = 33.4 bits (76), Expect = 0.005 Identities = 24/123 (19%), Positives = 36/123 (29%), Gaps = 2/123 (1%) Query: 55 PEPAPAPKPANTNGGSAAPAKSDKPSGTSAKTPEKTPAKSPEKAPEKASEKAEAKSAPAP 114 P PA P ++ +P PE P PE E + K P P Sbjct: 44 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 103 Query: 115 A-KSKAATPAADGDESQILRGAAAAVVKNMSASLDVPTATSVRAIPAKAM-IDNRIVINN 172 K D + A+ A TAT+ + P ++ R + N Sbjct: 104 KPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRN 163 Query: 173 HLK 175 + Sbjct: 164 QPQ 166 Score = 30.7 bits (69), Expect = 0.028 Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 12/109 (11%) Query: 31 APSGGANRAAASGNGKPAKTPTAPPEPAP-APKPANTNGGSAAPAKSDKPSGTSAKTPEK 89 AP+ A +P P PEP P PK A P K K Sbjct: 56 APADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP-----------KPKPK 104 Query: 90 TPAKSPEKAPEKASEKAEAKSAPAPAKSKAATPAADGDESQILRGAAAA 138 + P++ + E++ A + A P + + + + Sbjct: 105 PKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSV 153
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.6 bits (193), Expect = 3e-19 Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 4/207 (1%) Query: 2 EGFAGKVAVVTGAGSGIGQALAIELGRSGAHVAISDVDTEGLAVTEERLKAIGAQVKADR 61 +G GK+A +TGA GIG+A+A L GAH+A D + E L LKA +A Sbjct: 4 KGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 62 LNVTEREAFLLYADNVAEHFGKVNQIYNNAGIAFTGDVEITQFKDIERVMDVDFWGVVNG 121 +V + A + G ++ + N AG+ G + ++ E V+ GV N Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 122 TKAFLPHLIASGDGHVVNVSSVFGLFSVPGQAAYNSAKFAVRGFTEALRQEMGLAGHPVK 181 +++ +++ G +V V S AAY S+K A FT+ L E LA + ++ Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLE--LAEYNIR 181 Query: 182 VSCVHPGGIKTAIARNAEAAEGIDAEE 208 + V PG +T + + A E + E Sbjct: 182 CNIVSPGSTETDMQWSLWADE--NGAE 206
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 28.4 bits (63), Expect = 0.024 Identities = 21/108 (19%), Positives = 25/108 (23%), Gaps = 1/108 (0%) Query: 33 IEQPQDHSADSTEVFSPEAPAQPQNYTPPPAYTPPPAYPPPTPGYQPSGYSAPGYPPSGD 92 IE P S + +P PQ PPP P P P P Sbjct: 36 IELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 95 Query: 93 FATPPYPPPPAGYPPAYPDPGQQPPYPAP-GYGGPAYPPPGPYGTAPG 139 P P P + +P PA A Sbjct: 96 PKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATS 143
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 34.7 bits (79), Expect = 6e-04 Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 12/84 (14%) Query: 339 PGFVPGQTLGPLPGPMPAAQPAPQPAAPPPPAWVPPWMQPPPQQQPRCAVFCIQDVAPAA 398 P PG P P+P PA PA P P P +P P+ P D+ P A Sbjct: 313 PDLTPGSAEAPNAQPLPEVSPAENPANNPAPN-ENPGTRPNPEPDP--------DLNPDA 363 Query: 399 PAPVPAPAGPLGLVPPAPAAPPLP 422 P G G P +PA P P Sbjct: 364 N---PDTDGQPGTRPDSPAVPDRP 384
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 82.0 bits (202), Expect = 9e-23 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%) Query: 1 MFANVGWGEMLVLVIAGLVILGPERLPGAIRWTAGAVRQARDYVTGATSQLREDLG-PEF 59 MF ++G+ E+L++ I GLV+LGP+RLP A++ AG +R R T ++L ++L EF Sbjct: 1 MF-DIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEF 59 Query: 60 DDLREPLSELQKLRGMTPR 78 D + + E L +TP Sbjct: 60 QDSLKKV-EKASLTNLTPE 77
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 74.3 bits (182), Expect = 1e-16 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 26/181 (14%) Query: 205 DSVVTIEATSETEGSQGSGVVVDGRGYIVTNNHVISEAATNPSEFKMSVVFNDGTEVP-- 262 V I+ + T SGVVV G+ ++TN HV+ +P K + P Sbjct: 88 APVTYIQVEAPTGTFIASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNG 146 Query: 263 ----ANLVGRDPKTDLAVLKVDNV-------DNLSVARMGDSEKLRVGEEVIAAGAPLGL 311 + + DLA++K + + A M ++ + +V + + G P Sbjct: 147 GFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK 206 Query: 312 RSTVTHGIISALHRPVPLSGDGSDTDTVIDGVQTDASINHGNSGGPLINMNSEVIGINTA 371 G T + +Q D S GNSG P+ N +EVIGI+ Sbjct: 207 PVATMW------------ESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254 Query: 372 G 372 G Sbjct: 255 G 255
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.0 bits (132), Expect = 2e-11 Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 17/149 (11%) Query: 17 ARIRDAAIDQFGRAGF-AVGLRAIATAAGVSPGLVIHHFGSKDGLRAACDDYIADTVLAA 75 I D A+ F + G + L IA AAGV+ G + HF K L + + + Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGEL 73 Query: 76 KTESIQTSDPATW----------FAQLAEIEEYAPMMGYLVRSLQSGGELAK--RLWRT- 122 + E E +M + + GE+A + R Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNL 133 Query: 123 ---MIDNTERYVEEGVRAGTIKPSADPRA 148 D E+ ++ + A + R Sbjct: 134 CLESYDRIEQTLKHCIEAKMLPADLMTRR 162
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.041 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 385 EQSGLG--EAVLGGAVSRWRWLLTAVAAAVLGGAVLMFFAGLGNGLGAGITVGDPPTVLR 442 E+ G G EA L R R +L A +LG L G G+G + +G ++ Sbjct: 953 EKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVS 1012 Query: 443 LTVAGLAFVPALAVL 457 T+ + FVP V+ Sbjct: 1013 ATLLAIFFVPVFFVV 1027
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.1 bits (153), Expect = 2e-14 Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 14/168 (8%) Query: 1 MPRRRRAPRGSGDQLRDDILDATTELLLETGDAAAVSIRSVAQRVGVTPPSIYLHFADKT 60 M R+ + + R ILD L + G ++ S+ +A+ GVT +IY HF DK+ Sbjct: 1 MARKTKQ---EAQETRQHILDVALRLFSQQG-VSSTSLGEIAKAAGVTRGAIYWHFKDKS 56 Query: 61 ALLDEVCCRYFEKLDDEMQAVAGAYTGA-IDVLRAQGMAYLRFALKTPVLYRIAMM---- 115 L E+ + + + G + VLR + L + + + Sbjct: 57 DLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHK 116 Query: 116 ----GHGQPGSDVDVALNSSAFGHLRATVQALIAEGTYPPG-DPTTLA 158 G L ++ + T++ I P A Sbjct: 117 CEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAA 164
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 49.1 bits (117), Expect = 6e-08 Identities = 36/226 (15%), Positives = 87/226 (38%), Gaps = 17/226 (7%) Query: 184 IAIPLSFVVLVWVFGGLLAAALPLAVGAFAILGSMAVLR--GFTMVTDVSIFALNLSIAM 241 AI L F+V+ + A +P +LG+ A+L G+++ T +++F + L+I + Sbjct: 346 EAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINT-LTMFGMVLAIGL 404 Query: 242 GLALAIDYTLLIISRYRDELAAGH-DRNTALVRTMATAGRTVLFSALTVALSMIAMVLFP 300 +D ++++ + A ++M+ ++ A+ ++ I M F Sbjct: 405 L----VDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460 Query: 301 MY---FLKSFAYAGIAVVGFAALAAIVVAPA--AIVLAGDRLDSLDVRKLVRRMLGRPEP 355 + F+ ++ + + L A+++ PA A +L + S + + G Sbjct: 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL---KPVSAEHHENKGGFFGWFNT 517 Query: 356 VDKPVEQMFWYRSTKFVMRRSIPIATVVVTLLLLLGAPFLGANWGF 401 + S ++ + + ++ + FL F Sbjct: 518 TFDHSVN-HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSF 562 Score = 40.2 bits (94), Expect = 4e-05 Identities = 43/227 (18%), Positives = 82/227 (36%), Gaps = 15/227 (6%) Query: 112 PATPALVSKDGKTGL-IVAGITGGESGAQKHAKALTDELVHDR-DGVTVRAGGVAMTYVQ 169 +P L +G + I G S A AL + L G+ G M+Y + Sbjct: 810 YGSPRLERYNGLPSMEIQGEAAPGTSSGD--AMALMENLASKLPAGIGYDWTG--MSYQE 865 Query: 170 INTQSEKDLLMMEAIAIPLSFVVLVWVFGGLLAAALPLAVGAFAILGSMAVLRGFTMVTD 229 S + AI+ + F+ L ++ + V I+G +L Sbjct: 866 R--LSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVG--VLLAATLFNQK 921 Query: 230 VSIFALNLSIAMGLALAIDYTLLIISRYRDELAA-GHDRNTALVRTMATAGRTVLFSALT 288 ++ + + + + L+ +LI+ +D + G A + + R +L ++L Sbjct: 922 NDVYFM-VGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLA 980 Query: 289 VALSMIAMVLFPMYFLKSFAYAGIAVVG---FAALAAIVVAPAAIVL 332 L ++ + + + GI V+G A L AI P V+ Sbjct: 981 FILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVV 1027
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 31.0 bits (70), Expect = 0.005 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 30/148 (20%) Query: 126 SVRHAVKAQSLGVDGISIDGFE-----------CAGHPGEDDVPGLVLIPAAADKIEIPM 174 ++R L DG E G + L I P Sbjct: 22 TLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGIKDNTVICSLRFIETKY-----PN 76 Query: 175 IASGGFADSRGLVAALALGADGINMGSRFMCTVESCIHQNVKEAIVAGDERGTELIFRSL 234 + +G F + + SRF + ++ + I+ + + ++F S+ Sbjct: 77 MITGTFFP---YFKEINIPEGNYLESSRF------FVDKSRAKDILGNEYPISSMLFLSM 127 Query: 235 HNTARVAS-----NVVSREVVDILKAGG 257 N ++ +VS ++ ILK G Sbjct: 128 INYSKDKGYDGIYTIVSHPMLTILKRSG 155
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 72.4 bits (177), Expect = 3e-17 Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 16/202 (7%) Query: 3 IKDAVAVVTGGASGLGLATTKRLLDRGASVVVID------LKGEDAVKELGARAKFVEAN 56 I+ +A +TG A G+G A + L +GA + +D K ++K A+ A+ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 57 VTDPEQVTAALDA-AEEMGPLRIDVNCAGIGNAIKTLGKDGPFPLDGFRKVVEVNLIGTF 115 V D + EMGP+ I VN AG+ G + + VN G F Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLR----PGLIHSLSDEEWEATFSVNSTGVF 121 Query: 116 NVIRLAAERIAKQEPINGERGVIINTASVAAFEGQIGQAAYSASKGGVVGMTLPIARDLS 175 N R ++ + + G I+ S A + AAY++SK V T + +L+ Sbjct: 122 NASRSVSKYMMDRR-----SGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 176 REFIRVCTIAPGLFKTPLLGSL 197 IR ++PG +T + SL Sbjct: 177 EYNIRCNIVSPGSTETDMQWSL 198
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 28.6 bits (64), Expect = 0.025 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 12/44 (27%) Query: 190 NPMLGFAAI--------ILGTVC-ALLRRSTGG---VLAPMLTH 221 NP LGF AI I T ALLR ST G V+ PM+ Sbjct: 353 NPFLGFRAIRLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIAT 396
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 53.2 bits (128), Expect = 6e-10 Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 24/127 (18%) Query: 5 RILVTGATGYIGSRLVTALLEDGHQVV-----AASRDV----ERLADFGWYDDVTAVTLD 55 + LVTGA G+IG + LLE GHQVV DV RL +D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA-QPGFQFHKID 60 Query: 56 AHDEISAKQALTEAGPIDVVYYLVHGIGQPGFR----------EADNKAAANVASAAKAA 105 D L +G + V+ H + R +++ N+ + Sbjct: 61 LADR-EGMTDLFASGHFERVFISPH---RLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 106 GVRRIVY 112 ++ ++Y Sbjct: 117 KIQHLLY 123
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 63.1 bits (153), Expect = 1e-13 Identities = 55/222 (24%), Positives = 88/222 (39%), Gaps = 17/222 (7%) Query: 17 LTGKTCVITGASAGLGRESARALAATGAHVILAARNADALAETETWVRAEVADARLSLVP 76 + GK ITGA+ G+G AR LA+ GAH+ N + L + + ++AE A P Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA--EAFP 63 Query: 77 LDLTSLASVAAAAEQISELTPVVHVLMNNAGV--MFTPFGRTAEGFETQFGTNHLGHFEF 134 D+ A++ +I + +L+N AGV + E +E F N G F Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 135 TRLLFPALVAADGARVVVLSSEGHRMSDVDFDDPNFEHRDYDKFAAYGASKTANVLHAVE 194 +R + ++ +V + S N AAY +SK A V+ Sbjct: 124 SRSVSKYMMDRRSGSIVTVGS-------------NPAGVPRTSMAAYASSKAAAVMFTKC 170 Query: 195 LDRRLRDSGVRAFAVHPGIVATSLARHMTNDDFASLNRSAAS 236 L L + +R V PG T + + D+ + S Sbjct: 171 LGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGS 212
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.3 bits (125), Expect = 1e-10 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 19/186 (10%) Query: 44 RAVLDATVDLLRDQSFDDLTTRQIADRAGVAHSDLCAYFRSKDAIVAEVY---------L 94 + +LD + L Q + +IA AGV + +F+ K + +E++ L Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGEL 73 Query: 95 GLLRDAPLAVDVEESARTRVVALFHQLVMLPADRPGLAAACSSA-MISQDKTVQPIRRRI 153 L A D R ++ + V R + + + VQ +R + Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNL 133 Query: 154 QAELHRRV---------RTVLRSDAWPEVAQTLEFGLVGAMVQASSGAATFEGMADELAR 204 E + R+ +L +D A + G + +++ A + E Sbjct: 134 CLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARD 193 Query: 205 VVTTLL 210 V LL Sbjct: 194 YVAILL 199
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 29.4 bits (66), Expect = 0.024 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 4/118 (3%) Query: 50 GLIGFNMPEEFGGGGTDDFRFNAIIDEEIARAGVPGPGLSLHNDVVAPYFKDLTTDEQKQ 109 +IG N +F GG T ID + RA + L DV+ +D + E + Sbjct: 39 LVIGLNFGIDFKGGTTIRTESTTAIDVGVYRAALEPLEL---GDVIISEVRDPSFREDQH 95 Query: 110 RWLPGIASGETIIAVAMTEPGAGSDLAGIRTSAVRDGDDWILNGSKTFISSGINSDLV 167 + I E A + G +L +A+ D + S + ++ +LV Sbjct: 96 VAMIRIQMQEDGQG-AEGQGAQGQELVNKVETALTAVDPALKITSFESVGPKVSGELV 152
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 30.7 bits (69), Expect = 0.009 Identities = 16/50 (32%), Positives = 17/50 (34%) Query: 408 EPLPAPPPGGPPPGPPALAPPGIASVPDPDPGVVSVPAPGEAPPLVPVPG 457 EP A P P P P I P P V+ P P P PV Sbjct: 56 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKK 105
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 36.6 bits (84), Expect = 2e-04 Identities = 37/118 (31%), Positives = 44/118 (37%), Gaps = 13/118 (11%) Query: 379 IAFPTYANYFPVTRAVPEPPSIRNNFGGPAIGP-------IPYPGAPAYGAQLYAPDGTP 431 +A T N PVT P + FG + G IP P A+ AP+ P Sbjct: 270 VAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAE--APNAQP 327 Query: 432 L---WPGLPPAPPPGAPRDPGPRPGSEPFIVPNPAQLQPTAVPYPFVPPPVPALPGPP 486 L P PA P +PG RP EP NP P P P PA+P P Sbjct: 328 LPEVSPAENPANNPAPNENPGTRPNPEPDPDLNP-DANPDTDGQPGTRPDSPAVPDRP 384
>PERTACTIN#Pertactin signature. Length = 922 Score = 28.1 bits (62), Expect = 0.047 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 22/100 (22%) Query: 42 GTAVTHYRVELMRLIAQM-GLGSGALIVIGGTVAIVGFLTVTTGALVAVQGYTDFAEIGV 100 G V+ V+L + I + LG+ G V TV+ G+L A G V Sbjct: 292 GVDVSDSTVDLAQSIVEAPQLGAAIRAGRGARV------TVSGGSLSAPHG-------NV 338 Query: 101 EALTGFASAFFNVRLIAPATTAIALSATIGAGATAQLGAM 140 G A R PA+ LS T+ AGA AQ A+ Sbjct: 339 IETGGGAR-----RFPPPASP---LSITLQAGARAQGRAL 370
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 73.1 bits (179), Expect = 3e-18 Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 4/171 (2%) Query: 5 ADRDDERRRIIEAAYRCLLAQRAGPVPMSAILSSAGLSSRAFYRHFVSKDDLFLALLHQA 64 + + R+ I++ A R Q + I +AG++ A Y HF K DLF + + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 65 GAVLVAHVNGVAEAAVGTPVEQLADWIGEMFDSIVDPEQLRQLTVI---DCDQVRAAKGY 121 + + G P+ L + + + +S V E+ R L I C+ V Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 122 REMRERLHVERERSLTEILRRGHDDGSF-PLVDPEPDAVAINAVVSRVMAH 171 ++ + L +E + + L+ + + A+ + +S +M + Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN 177
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 31.0 bits (70), Expect = 0.004 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 11/93 (11%) Query: 25 EWNGGASDSSSPSVLMLHGGGQNRFSWKKTGQILAAQGLHVVALDSRGHGDSDRSPEATY 84 + N +S + P V+ L G G K G IL QG VV S + + P+ Sbjct: 41 QVNAASSHTKPPLVIFLSGDGGWATLDKAVGGILQQQGWPVVGWSSLKYYWKQKDPKDV- 99 Query: 85 TVEALCADTLAVL----HQIGR-PTVLIGASMG 112 DTLA++ + G +LIG S G Sbjct: 100 -----TQDTLAIIDKYQAEFGTQKVILIGYSFG 127
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 55.4 bits (133), Expect = 4e-11 Identities = 60/276 (21%), Positives = 94/276 (34%), Gaps = 60/276 (21%) Query: 6 VTGSASGMGRAVAEKLRRDGHTVVGVDVKDADIVADLS--------------DVQGRRAA 51 +TG+A G+G AVA L G + VD + +S DV+ A Sbjct: 13 ITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAI 72 Query: 52 ADAVRR--ASKGSLDGAVLAAG-LGPGPGRDRPR----LIAQVNYFGVVDLLEAWQPLLA 104 + R G +D V AG L PG VN GV + + + Sbjct: 73 DEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYMM 132 Query: 105 AADGAKVVVFSSNSTTTTPAVPARAVRAFLAHDAEKAVRAVRLFGGSASVMAYAASKIAV 164 +V SN S+ AYA+SK A Sbjct: 133 DRRSGSIVTVGSNPAGVP----------------------------RTSMAAYASSKAAA 164 Query: 165 SRWVRREAVGSGWAGAGIRLNALAPGAIMTPLLQEQL--SDGRRAKLVRSFP------VP 216 + + +G A IR N ++PG+ T +Q L + ++++ +P Sbjct: 165 VMFTK--CLGLELAEYNIRCNIVSPGSTETD-MQWSLWADENGAEQVIKGSLETFKTGIP 221 Query: 217 TGAFGDADQLAEWVLFMLSDAADFLCGSVIFVDGGT 252 +A+ VLF++S A + + VDGG Sbjct: 222 LKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGGA 257
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 36.5 bits (84), Expect = 2e-04 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 7/110 (6%) Query: 121 ADVDDPDSDTAPEPGADNSSPNSEGVPAVDPDVTEPQEQIEVTPVAPGSAEAEPAAGP-- 178 AD++ P + P P E +P + E+ + P + P Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Query: 179 -----GANTDSPIMSTGTATKTGAAVDTAAAQQVSTTVTAPATLAAAQPR 223 + SP +T A T + A ++ V++ + P L+ QP+ Sbjct: 113 DVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ 162
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 53.5 bits (128), Expect = 1e-10 Identities = 55/205 (26%), Positives = 87/205 (42%), Gaps = 32/205 (15%) Query: 16 GRTVIVTGANSGLGLVTARELARVGATTILAVRNLDKGHAAAAGMSGDVEVRH-----LD 70 G+ +TGA G+G AR LA GA N +K + + E RH D Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLK--AEARHAEAFPAD 65 Query: 71 LQDLASIRV----FAEGVAHVDVLVNNAGI--MAVPYALTADGFESQIGTNHLGHFALTN 124 ++D A+I + +D+LVN AG+ + ++L+ + +E+ N G F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 125 LLLPKITDR----VVTVSSMMHLLGYISLKDLNWKSRPYFAWPAYGQSKLANLLFTSELQ 180 + + DR +VTV S N P + AY SK A ++FT L Sbjct: 126 SVSKYMMDRRSGSIVTVGS-------------NPAGVPRTSMAAYASSKAAAVMFTKCLG 172 Query: 181 RKLAAAGSAVRAVAAHPGYSATNLQ 205 +L A +R PG + T++Q Sbjct: 173 LEL--AEYNIRCNIVSPGSTETDMQ 195
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 28.6 bits (63), Expect = 0.016 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 8/30 (26%) Query: 135 VGIGRPPGQKSGA--------SFVLENFSS 156 +GIG PP +GA SFV+ENFSS Sbjct: 22 LGIGAPPSAHAGADDVVDSSKSFVMENFSS 51
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 26.6 bits (58), Expect = 0.010 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Query: 6 RYLRILLVPSVAAAALMAAPVAGAQATCQEAGSLTRCETSGSVSVKAVPGTRA-PNVADT 64 + LRI+ S AAAAL+A A A A + +++ + + A P+++ Sbjct: 3 KNLRIV---SAAAAALLAVAPIAATAMPVNAATTINADSAINANTNAKYDVDVTPSISAI 59 Query: 65 IPRGNNGRGPGI 76 + P I Sbjct: 60 AAVAKSDTMPAI 71
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 36.8 bits (85), Expect = 6e-05 Identities = 39/216 (18%), Positives = 85/216 (39%), Gaps = 9/216 (4%) Query: 17 VPARPTNLAQQSWIMV-KRN-MIHTKRMPEMLSDVTAQPIMFVLLFAFVFGASITNTGGA 74 V A P +WI V +RN + K L A+P++++ G + GG Sbjct: 6 VTALPGGSL--NWIAVWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGV 63 Query: 75 SYREFLLPGIQAQTIVFSAF--VVAAGITADVEKGIIDRFRSLPISRSSVLIGRSIASVI 132 SY FL G+ A + + +A + A + + + +++G + Sbjct: 64 SYTAFLAAGMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAAT 123 Query: 133 HSSLGVVVMALTGLAIGWRIRNGVGEAVLAFALLLVFGFGMIWFGILIGSLMRTVEAVNG 192 ++L + + A+G+ + + A ++ + G G+++ +L + + Sbjct: 124 KAALAGAGIGVVAAALGYTQWLSL---LYALPVIALTGLAFASLGMVVTALAPSYDYFIF 180 Query: 193 VMFTALFPVTFLANTFVPTEPMPHWLRVIAEWNPVS 228 + P+ FL+ P + +P + A + P+S Sbjct: 181 YQTLVITPILFLSGAVFPVDQLPIVFQTAARFLPLS 216
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 110 bits (277), Expect = 3e-34 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 6/133 (4%) Query: 1 MLKGFKDFISRGNVIDLAVAVVVGAAFTGLVTAFTQNVVQPLVDRV--GAGPGREYGILR 58 ++K F++F RGNV+DLAV V++GAAF +V++ +++ P + + G + LR Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLR 62 Query: 59 IPLGGDQFVDLN--AVLSAAINFVIVAAVIYFVIVVPFKKIKERDAKVA--STETELTLL 114 G V ++ + +F+IVA I+ I + K ++++ A + E LL Sbjct: 63 DAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAAPAPTKEEVLL 122 Query: 115 TEIRDMLRENTTD 127 TEIRD+L+E Sbjct: 123 TEIRDLLKEQNNR 135
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 29.5 bits (65), Expect = 0.010 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 9/86 (10%) Query: 126 VDPDLGFGNAIVTPPLFPGVSISADLGNGPGIQEVATFSVDVAGPGGSVVVSNAHGTVTG 185 DP LG + P G ++ GI +A + A G +V V G++ Sbjct: 43 ADPALGLEYPVRPPVPGAGGLNAS----AKGIHSIAIGATAEAAKGAAVAV--GAGSIAT 96 Query: 186 AAGGVLLRPFARLISSTGDSVSTYGA 211 V + P ++ + GDS TYGA Sbjct: 97 GVNSVAIGPLSKAL---GDSAVTYGA 119
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 62.3 bits (151), Expect = 8e-13 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 26/182 (14%) Query: 157 PSVVKLEVNQGRASEEGSGVILSTDGLILTNNHVVATAAGTPEGRAGAPETKV--TFANG 214 V ++V + SGV++ D +LTN HVV G P P + NG Sbjct: 88 APVTYIQVEAPTGTFIASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNG 146 Query: 215 KSTTFTVVGTDPGSDIAVVRAENV-------SGLTPITVGSSADLRVGQDVVAIGSPLGL 267 T + D+A+V+ + P T+ ++A+ +V Q++ G P Sbjct: 147 GFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK 206 Query: 268 EGTVTTGIVSALNRPVAAGGDAQNQNTVLD--AIQTDAAINPGNSGGALVNMNGELVGIN 325 PVA +++ + T L A+Q D + GNSG + N E++GI+ Sbjct: 207 --------------PVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIH 252 Query: 326 SA 327 Sbjct: 253 WG 254
>FLAGELLIN#Flagellin signature. Length = 507 Score = 29.2 bits (65), Expect = 0.037 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 7/142 (4%) Query: 146 GGNTLLLSKSLAPTGKVLKRLGTVLLIVGGIGVAVAAIAGGMVASAGLRPVARLTRAAER 205 G K+ + K L + I ++T A + Sbjct: 339 NGQFTFDDKTKNESAK------LSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKT 392 Query: 206 VARTDDLRPIPVFGNDELARLTEAFNMMLRALAESRERQARLVADAGHELRTPLTSMRTN 265 + + N++ A ++ L ++ + + + + G ++ S TN Sbjct: 393 MFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLG-AIQNRFDSAITN 451 Query: 266 VELLMESMKPGARRIPDEDMAE 287 + + ++ RI D D A Sbjct: 452 LGNTVTNLNSARSRIEDADYAT 473
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 105 bits (263), Expect = 2e-28 Identities = 42/135 (31%), Positives = 67/135 (49%) Query: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIATARPDALVLDVMMPRLDGLE 61 ILV DDD A+R L ++LS GY V + + IA D +V DV+MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTNP 121 + +++ DLP+LV++A+++ + + GA DYLPKPF L EL+ + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 LEGDADSAAMTFSDL 136 + + L Sbjct: 125 RPSKLEDDSQDGMPL 139
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.023 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 623 TITAPADGILVELNVEPGQQVEVGAILARVDNP-ADAD 659 I + I+ E+ V+ G+ V G +L ++ A+AD Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEAD 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 103 bits (258), Expect = 1e-27 Identities = 36/119 (30%), Positives = 57/119 (47%) Query: 8 PRVLVVDDDPDVLASLERGLRLSGFDVFTAVDGAEALRSATETRPDAIVLDINMPVLDGV 67 +LV DDD + L + L +G+DV + A R D +V D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 68 SVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126 ++ ++ D+PV V+SA+++ + E GA DYL KPF L EL+ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 49.2 bits (117), Expect = 3e-10 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 2/107 (1%) Query: 15 PTELVTEDIVVGDGPEAVPGANVEVHYVGVEYDTGEEFDSSWNRGESIEFPLRGLIQGWQ 74 P+ L + I G G + V V Y G D G FDS+ G+ F + +I GW Sbjct: 125 PSGLQYKIIDAGTGAKPGKSDTVTVEYTGTLID-GTVFDSTEKAGKPATFQVSQVIPGWT 183 Query: 75 DGIPGMKVGGRRKLTIPPEQAYGPAG-GGHRLSGKTLIFVIDLLATR 120 + + M G ++ +P + AYGP GG +TLIF I L++ + Sbjct: 184 EALQLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVK 230
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 31.3 bits (70), Expect = 0.003 Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Query: 29 QPPLPPPPAPAP-PNPLPFESIPGLGPISSPGPVPPPGPGVAPPPATALFPLAQSDSPSQ 87 +P L P A AP PLP E P P ++P P PG P P L P A D+ Q Sbjct: 312 RPDLTPGSAEAPNAQPLP-EVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQ 370 Query: 88 --IFGGIPAMPD 97 PA+PD Sbjct: 371 PGTRPDSPAVPD 382
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.017 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 2 RSTCVRVATAMVAAALWTAPAPIASAQPAPAPPPTPGVQPVADVGAPPIPNGAVP 56 R + +V A APAP P P PPP P V+ P+P AVP Sbjct: 95 REEGLESVAGIVMGAPAGAPAP---KPPRPEPPPRPVVEKECWETIQPVPEHAVP 146
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.9 bits (137), Expect = 2e-12 Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 9/185 (4%) Query: 1 MVRPAQTARSERTREALRRAAVVRFLAQGVDGTSAEQIAADAGVSLRTFYRHFASKHDLL 60 M R + ++ TR+ + A+ F QGV TS +IA AGV+ Y HF K DL Sbjct: 1 MARKTK-QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF 59 Query: 61 FADYDAGLHWFRSA---LAAREPGESI--VESVQSAIMASPYDDWAVTKIAAMRSEELDA 115 ++ A+ PG+ + + + ++ S + + + + + Sbjct: 60 SEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEF 119 Query: 116 DRIVRHIRQVEADFAEAIEEHMSAVDPAL---PGTDERMRITVTARCIAAAVFGAMEVWM 172 + ++Q + + + + + A + + G ME W+ Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWL 179 Query: 173 LGEQR 177 Q Sbjct: 180 FAPQS 184
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 47.3 bits (112), Expect = 5e-09 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 4/119 (3%) Query: 5 RQRLLDALEASIAEDGYAKSTVAGIVRRARTSRRTFYEHFDSREACFVALLADANADQVR 64 RQ +LD ++ G + +++ I + A +R Y HF + F + + ++ Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 65 QISE-AVDPSAPWQKQVRQAIEA---WISSGESRPALMLSWIRDVPSLGAVARELQRDA 119 E +R+ + + E R LM +G +A Q Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.6 bits (66), Expect = 0.008 Identities = 18/54 (33%), Positives = 19/54 (35%) Query: 27 PAAVFMAATADTSPVPVAVVEPEPVAAPAAPVVEQPEVPCCVEVVAAPSLTPPP 80 P +V M A AD P PEPV P PE P VV P Sbjct: 49 PISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK 102
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 33.2 bits (75), Expect = 0.001 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 16/118 (13%) Query: 65 ALNHPHVVAVHDSGV----HEGRHYIVLERLPGQSLADVLA------RNGPLPAEH---- 110 A HP++ VH V + ++++ + G +D L + G + +E Sbjct: 187 AGKHPNLANVHGMAVVPYGNRKEEALLMDEVDGWRCSDTLRTLADSWKQGKINSEAYWGT 246 Query: 111 VRAIMRDVLSALGAAHASGVLHRDIKPANILLTRHGGVKIA-DFGV-AKSPDTPQTLT 166 ++ I +L +GV+H DIKP N++ R G + D G+ ++S + P+ T Sbjct: 247 IKFIAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPKGFT 304
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 38.8 bits (90), Expect = 5e-06 Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 9/107 (8%) Query: 14 PLQDRQALRRGELITAGIGLLGSPGGPKLTVRAVCRAAGLTERYFYESFTDRDEYVAAVY 73 + R ++ + L G ++ + +AAG+T Y F D+ + + ++ Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 74 DDVCAAAMSTLMES---------QSMRDAVERFVALMIDDPARGRVL 111 + + +E +R+ + + + + R ++ Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLM 110
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 33.2 bits (75), Expect = 0.003 Identities = 32/100 (32%), Positives = 38/100 (38%), Gaps = 22/100 (22%) Query: 14 PDPDEAATQA-APPATPSPPSAPVTVADLIAKINGGTPPP-EPTRHRAEPEPEPEPYPDV 71 P PD A AP A P P +P A+ P P E R PEP+P+ PD Sbjct: 311 PRPDLTPGSAEAPNAQPLPEVSP-------AENPANNPAPNENPGTRPNPEPDPDLNPDA 363 Query: 72 DELDTAILPVLDEHPSELPDLAAPRPPVHTPSRPKRPHRR 111 + P D P PD A P RP HR+ Sbjct: 364 N-------PDTDGQPGTRPDSPA------VPDRPNGRHRK 390
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 76.6 bits (188), Expect = 1e-18 Identities = 59/196 (30%), Positives = 84/196 (42%), Gaps = 5/196 (2%) Query: 24 PGSPADPTVADALIDRCAREFGSIDILVNCAGTAEPVGSSILNVTTEQFRDLMDAHLGTA 83 P D D + R RE G IDILVN AG P I +++ E++ + Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRP--GLIHSLSDEEWEATFSVNSTGV 120 Query: 84 FQTCRAAAPRMADQGSGVIVNT-SSFAFLGDYGGTGYPAGKGAVTSLTLAIAAELKEYGV 142 F R+ + M D+ SG IV S+ A + Y + K A T + EL EY + Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 143 RANVVCPGA-KTRLSTGPEYEAHIAELNRRGLLDEISTQGALDA-APPEYVAPTYGYLVS 200 R N+V PG+ +T + + + AE +G L+ T L A P +A +LVS Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 201 DLAKDITGQIFIAAGG 216 A IT GG Sbjct: 241 GQAGHITMHNLCVDGG 256
>PF06580#Sensor histidine kinase Length = 349 Score = 37.2 bits (86), Expect = 1e-04 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 28/114 (24%) Query: 377 PRLRQVLSNLVANALQH----TPDTAGVTVRVGTDDDNTIVEVCDEGPGMSPEDAQRVFE 432 P + ++ LV N ++H P + ++ D+ +EV + G + Sbjct: 256 PPM--LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE---- 309 Query: 433 RFYRADSSRTRASGGTGLGLSIVD---SLVYAHGGRVSVSTAPGSGCRFRVSLP 483 TG GL V ++Y ++ +S G V +P Sbjct: 310 --------------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 107 bits (270), Expect = 3e-29 Identities = 33/136 (24%), Positives = 59/136 (43%) Query: 12 ARVLVVDDETNIVELLSVSLKFQGFEVHTATNGPAALDKAREVRPDAIILDVMMPGMDGF 71 A +LV DD+ I +L+ +L G++V +N D ++ DV+MP + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 72 GLLRRLRADGIEAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVVLRRSG 131 LL R++ + P L ++A+++ I G DY+ KPF L E++ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 132 GGVQEPRPSRLTFADI 147 + + Sbjct: 124 RRPSKLEDDSQDGMPL 139
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.8 bits (64), Expect = 0.022 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 15/80 (18%) Query: 2 NLGKSLTDLAFAP-ARAGLAVADAGLGVASGALAVARRSLGESRDGTQTPTSFASMLGVQ 60 N+GK ++ A A GL+ + A G+ + A+ +A +P SF L + Sbjct: 282 NVGKGISQYIIAQRAAQGLSTSAAAAGLIASAVTLA-----------ISPLSF---LSIA 327 Query: 61 DAVDRANRLAKLMDEDQPLG 80 D RAN++ + + LG Sbjct: 328 DKFKRANKIEEYSQRFKKLG 347
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 57.3 bits (138), Expect = 2e-12 Identities = 35/202 (17%), Positives = 75/202 (37%), Gaps = 17/202 (8%) Query: 15 ARRPGGRNARVRAQILAATAELVARDGIAGFRYEEVAEYAGVHKTSVYRNWPDREELVVD 74 AR+ R IL L ++ G++ E+A+ AGV + ++Y ++ D+ +L + Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 75 ALLRYADDLASIADT------GDIQRDLVDFLLALAGGLETPFGRTL-----EQAMQPAG 123 ++ + GD L + L+ + T R L + G Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 124 QPSAVQALSRILDQRV-AAMQRRVHAAVDRGELPA-IDSAFLGEMISGPVHLIVNRGIRP 181 + + VQ R L +++ + ++ LPA + + ++ G + ++ + Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 182 ---FTRADAER-IVGVVLAGIR 199 F R V ++L Sbjct: 182 PQSFDLKKEARDYVAILLEMYL 203
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 61.8 bits (150), Expect = 2e-12 Identities = 62/341 (18%), Positives = 135/341 (39%), Gaps = 29/341 (8%) Query: 39 RLVLWAAVLTLANVLADVVIGSPMMVLPQLLDHFDTDQ--VGWLNTGAMLAGAIWSPLLA 96 ++++W +L+ +VL ++V+ + LP + + F+ W+NT ML +I + + Sbjct: 14 QILIWLCILSFFSVLNEMVLN---VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70 Query: 97 KSSDVFGKRRILVVTLLVAGAGALVCLIAPN-VWIFLAGRFLQGAAFAAVFITVTLVLQI 155 K SD G +R+L+ +++ G+++ + + + + RF+QGA AA V +V+ Sbjct: 71 KLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVAR 130 Query: 156 CGPR----VAMAMVGLVTSGSSIVGIIEPFLMKPVIDAFGYRGVFIASALLAAAAALCVR 211 P+ A ++G + + VG P + + + + + + ++ Sbjct: 131 YIPKENRGKAFGLIGSIVAMGEGVG---PAIGGMIAHYIHWSYLLLIPMITIITVPFLMK 187 Query: 212 AVIPESPIRSPGRIDLGGAVLLGGGLGAVLGYISLGRDLGWLSGGMTMLLAGGVAALTAW 271 + E I+ D+ G +L+ G+ + + + L V + + Sbjct: 188 LLKKEVRIKGH--FDIKGIILMSVGIVFFMLFTTSYSIS---------FLIVSVLSFLIF 236 Query: 272 AALALRVDEPIIDLRALSRPILLTLLTLVLAAGSFRSMLQLTSIVAQVPPDLGLGYGLGH 331 +V +P +D + + + V+ VP + + L Sbjct: 237 VKHIRKVTDPFVDPGLGKNIPFMIGVLC-----GGIIFGTVAGFVSMVPYMMKDVHQLST 291 Query: 332 GEAIAVLLAAPNVGIAIGGICAGWLAGRIGPALPLLGGIGL 372 E +V++ + + I G G L R GP L G+ Sbjct: 292 AEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTF 332
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 103 bits (258), Expect = 2e-28 Identities = 66/255 (25%), Positives = 101/255 (39%), Gaps = 17/255 (6%) Query: 11 LITGGGSGIGKGIAAAVVASGGNAVLAGRNADKLAAAAEEITAHGGDGAGTVIYEPADVT 70 ITG GIG+ +A + + G + N +KL + A A PADV Sbjct: 12 FITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE----ARHAEAFPADVR 67 Query: 71 DEDQASRLVAAATAWHGRLDGVVHSAGGSETIGPLTQMDSAAWRNTVDLNLNGTMYVLKH 130 D + A G +D +V+ AG G + + W T +N G + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLR-PGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 131 AARELVRGGGGSFVGISSIASSNTHRWFGAYGPTKAALDHLMMVAADELGPSSVRVNGIR 190 ++ ++ GS V + S + AY +KAA EL ++R N + Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 191 PGLTRTDM----------VAPVIDTPALSEDYRLCTPLPRVGEVEDVANLAVFLLSDAAS 240 PG T TDM VI E ++ PL ++ + D+A+ +FL+S A Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSL--ETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 241 FITGQVINVDGGHGL 255 IT + VDGG L Sbjct: 245 HITMHNLCVDGGATL 259
>cloacin#Cloacin signature. Length = 551 Score = 41.6 bits (97), Expect = 6e-06 Identities = 37/110 (33%), Positives = 46/110 (41%), Gaps = 1/110 (0%) Query: 289 GAGGDGAPGGAGGNGGTVNNAFGNGANGVGGSGGAGGSSSSGAGGAGGKGGFVATDEGDA 348 G G G GA G +N G G S G+G SS + G GG G + G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGIHWGGGSG 61 Query: 349 TGGAGGAGGRANGSATGGDGGDGASASSAGDNRFGEDGNGGIAVGGAGGA 398 G GG G GS TGG+ A+ + G G GG+AV + GA Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 35.5 bits (81), Expect = 5e-04 Identities = 25/76 (32%), Positives = 26/76 (34%) Query: 383 GEDGNGGIAVGGAGGAGGSGGASGGDGGDGGTADTDGGPAASGGDGGGGGAGGFVGGDGG 442 G G GG G G GGAS G G GG + GGG G G G Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Query: 443 SGGDGGGALGGDTNTP 458 GG G G P Sbjct: 72 GGGSGTGGNLSAVAAP 87 Score = 34.3 bits (78), Expect = 0.001 Identities = 35/118 (29%), Positives = 40/118 (33%), Gaps = 14/118 (11%) Query: 246 GDADGGDGGRGGSASTGTGGTGGAGGSGSSDADSTHTVTGGNGGAGGDGAPGGAGGNGGT 305 G G G TG G G S S S + GG G+G G GNGG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG- 66 Query: 306 VNNAFGNGANGVGGSGGAGGSSSSGAGGAGGKGGFVATDEGDATGGAGGAGGRANGSA 363 N GGSG G S+ A A G +T GAGG + A Sbjct: 67 ------GNGNSGGGSGTGGNLSAVAAPVAFGFPAL-------STPGAGGLAVSISAGA 111 Score = 34.3 bits (78), Expect = 0.001 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 350 GGAGGAGGRANGSATGGDGGDGASASSAGDNRFGEDGNGGIAVGGAGGAGGSGGASGGDG 409 GA G NG TG G GAS S + + GG + G GGSG +GG Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSE--NNPWGGGSGSGIHWGGGSGHGNGGGN 68 Query: 410 GDGGTADTDGGPAAS 424 G+ G GG ++ Sbjct: 69 GNSGGGSGTGGNLSA 83 Score = 33.5 bits (76), Expect = 0.002 Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 12/119 (10%) Query: 213 DAVGASGGAGGRGGYLGGNGGNGGIGGLADSVNGDADGGDGGRGGSASTGTGGTGGAGGS 272 D G + GA G + G G+GG A +G + + GGS S G G G+ Sbjct: 5 DGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 273 GSSDADSTHTVTGGNGGAGGDGAPGGAGGNGGTVNNAFGNGANGVGGSGGAGGSSSSGA 331 GG G G G+ G + AFG A G+GG S S+GA Sbjct: 65 ------------GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 33.5 bits (76), Expect = 0.002 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 7/80 (8%) Query: 393 GGAGGAGGSGGASGGDGGDGGTADTDGGPAASGGDGGGGGAGGFVGGDGGSGGDGGGALG 452 G +G G G G GG +D G + + GGG G+G GG G G GG Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Query: 453 GDTNTPGDGGSGGSGGLGGS 472 G GGSG G L Sbjct: 72 G-------GGSGTGGNLSAV 84 Score = 33.5 bits (76), Expect = 0.002 Identities = 28/85 (32%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 405 SGGDGGDGGTADTDGGPAASGGDGGGGGAGGFVGGDGGSG-----GDGGGALGGDTNTPG 459 SGGDG T +GG G G GG G G S G G G+ G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 460 DGGSGGSGGLGGSDGDSGSDGTSGA 484 G GG+G GG G G+ A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 30.8 bits (69), Expect = 0.013 Identities = 23/86 (26%), Positives = 35/86 (40%) Query: 192 GDGGNGGNDYNSSNSSTPGANDAVGASGGAGGRGGYLGGNGGNGGIGGLADSVNGDADGG 251 GDG +S++ + G +G GGA G+ N GG G G + G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 252 DGGRGGSASTGTGGTGGAGGSGSSDA 277 +GG G++ G+G G + A Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVA 89
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 40.0 bits (93), Expect = 1e-05 Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 4/95 (4%) Query: 423 PMIPPQVDPDPGPPVVQLPPGVAPGPGPAPHAPFPLPVPPNEVGPPPPPWPYFAPPDQNV 482 P PP + P P P P P P+ + + P P P P +Q Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 111 Query: 483 P--PYGRTPPGAP--APAPAPVPAAPPVAPAPGGP 513 + P +P APA + ++ A Sbjct: 112 RDVKPVESRPASPFENTAPARLTSSTATAATSKPV 146 Score = 33.0 bits (75), Expect = 0.002 Identities = 22/88 (25%), Positives = 25/88 (28%), Gaps = 3/88 (3%) Query: 444 VAPGPGPAPHAPFPLPVPPNEVGPPPPPWPYFAPPDQNVPPYGRTPPGAPAPAPAPVPAA 503 V P P A PP V P P P + P P P P P PV Sbjct: 50 VTPADLEPPQAV---QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 106 Query: 504 PPVAPAPGGPLLPAEAIPQAAGGPAMAS 531 P+ A P PA + Sbjct: 107 QEQPKRDVKPVESRPASPFENTAPARLT 134 Score = 29.2 bits (65), Expect = 0.035 Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 8/96 (8%) Query: 418 PPNKFPMIPPQVDPDPGPPVVQLPPGVAPGPGPAPHAPFPLPVPPNEVGPPPPPWPYFAP 477 P P P+ P+P + P P P P PV + P P + Sbjct: 66 EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK-----PVKKVQEQPKRDVKPVESR 120 Query: 478 PDQNVPPYGRTPPGAPAPAPAPVPAAPPVAPAPGGP 513 P P+ T P + A + PV GP Sbjct: 121 PAS---PFENTAPARLTSSTATAATSKPVTSVASGP 153
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 28.9 bits (64), Expect = 0.041 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 10/107 (9%) Query: 203 IAAAEGLNRFAGILANSKDSLGRTLDTLPAALDVLNRNRTTLVDAFAALRTFATVG--SR 260 A GL AG N+++++ R + P N V+A + A V ++ Sbjct: 276 FAVIGGLGSVAGFEKNTREAVDRWIQENP--------NAAETVEAVFNVAAAAKVAKLAK 327 Query: 261 VLQETKTDFAADFKDLYPIIKSLNDNADDFVKSLEFLPTFPFHYKYL 307 + K + DF D Y +L+D+A ++ ++ HY+ L Sbjct: 328 AAKPGKAAVSGDFADSYKKKLALSDSARQLYQNAKYREALDIHYEDL 374
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.8 bits (64), Expect = 0.036 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 26/137 (18%) Query: 162 ELLQGQGGALSAMLSSTSAFTQNLAARDQLIGDVITNLNTVLGTVDEKGAEFDASVDRLQ 221 +LLQ A + + NL ++ L T L ++ + Sbjct: 116 KLLQKYQKAGNILGGGAENIGDNLGKAGGILSTFQNFLGTALSSMK------------ID 163 Query: 222 KLLTGLAEGRDPIAGAIPPLAQASTDLTQMLQESRRPIQAVIENARPLAQRLDERKADIN 281 +L+ G + + LA+AS +L L ++ L ++ +N Sbjct: 164 ELIKKQKSGGNVSSSE---LAKASIELINQL----------VDTVASLNNNVNSFSQQLN 210 Query: 282 KVIEPLAENYLRLNALG 298 + L N LN +G Sbjct: 211 TLGSVL-SNTKHLNGVG 226
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 76.6 bits (188), Expect = 7e-19 Identities = 59/257 (22%), Positives = 98/257 (38%), Gaps = 22/257 (8%) Query: 4 LSGRTALVTGGAGGIGAACARALAERGATVTVADIDAAGATSLAEEIGGTAWTVDLF--D 61 + G+ A +TG A GIG A AR LA +GA + D + + + A + F D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 62 VAALEDLRLET----------DILVNNAGIQSISEIAEFPPDKFRSMMALMVEAPFLLIR 111 V + T DILVN AG+ I +++ + ++ F R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 112 AALPHMYRNGFGRVINISSIHGLRASPFKVAYVTAKHAMEGLSKVTALEGGPHGVTSNCI 171 + +M G ++ + S AY ++K A +K LE + + N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 172 NPGYVRT----PLVTKQIADQARTHSISEDKVLSDVLLKESAVKRLVEPEEVGALATWLA 227 +PG T L + + E L K+L +P ++ +L Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPL------KKLAKPSDIADAVLFLV 239 Query: 228 SPVAGMVTGASYTMDGG 244 S AG +T + +DGG Sbjct: 240 SGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.8 bits (80), Expect = 7e-04 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 284 ADTNSILRYLLVAHAV-HFAIVPFVGYLADRFGRRPVYMIGAILGATWGFFAF 335 D + LL +A+ FA P +G L+DRFGRRPV ++ + GA + Sbjct: 39 NDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVS-LAGAAVDYAIM 90 Score = 31.7 bits (72), Expect = 0.005 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 9/91 (9%) Query: 83 VFGHYGDKYGRKKLLQFSLLLVGVATFLMGCLPTFGQIGYWAPGLLVTLRFIQGFAVGGE 142 V G D++GR+ +L SL V +M P W +L R + G G Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL-----W---VLYIGRIVAGIT-GAT 112 Query: 143 WGGAVLLVAEHSPDRQRGFWASWPQAGVPVG 173 A +A+ + +R + A G Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFG 143
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.5 bits (128), Expect = 3e-11 Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 1/147 (0%) Query: 6 RTPREVWIDTALEMLAAEGPDSVRVEVLAQRLGVTRGGFYRQFGGRDDLVDAMLHVWEQR 65 + R+ +D AL + + +G S + +A+ GVTRG Y F + DL + + E Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 66 SIDDVRERVEAEGGDARRKVRKAGVLTF-SAQLLPLDLAVREWARRDPDVEARLRRVDNR 124 + E GD +R+ + S + E + + V Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 125 RMAYLRELISSICDGDAAEVEARALLA 151 + E I +EA+ L A Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPA 156
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.5 bits (141), Expect = 1e-12 Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 9/197 (4%) Query: 9 PEQNSATAARVLTAANDLLLARGAKGFTVADVAARAHVGKGTVYLYWPTKEDLLIGLVGR 68 ++ T +L A L +G ++ ++A A V +G +Y ++ K DL + Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 69 GFLRILDELITRFGSDVDLVRPS------RFCPAMLQVATGQPLIAALQRHDDDLLGILV 122 I + + + + + L+ + H + +G + Sbjct: 66 SESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEE-RRRLLMEIIFHKCEFVGEMA 124 Query: 123 DHPRSIALTEALGPDAVLNAAIPLWREHGMARTDWDIADQTFAVQALISGVLLSLLADPV 182 ++ L + + E M D ++ ISG++ + L P Sbjct: 125 VVQQAQRNLC-LESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP- 182 Query: 183 STDDRLRVFGAAVTALL 199 + D + V LL Sbjct: 183 QSFDLKKEARDYVAILL 199
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 59.4 bits (144), Expect = 2e-11 Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 18/130 (13%) Query: 3 DLKITGGTVVDGTGADRFTADVAVKDGKIVEIRRRGPSDPP-----LEGNATETIDATGK 57 D IT ++D G AD+ +KDG+I I + G D + G TE I GK Sbjct: 69 DTVITNALILDHWGI--VKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGK 126 Query: 58 IVAPGFVDIHTHYDGQVSWDSVLEPSSNHGVTTVVAGNCG----VGFAPVRPGSEEWLIA 113 IV G +D H H+ + + E + G+T ++ G G PG W IA Sbjct: 127 IVTAGGMDSHIHF---ICPQQIEEALMS-GLTCMLGGGTGPAHGTLATTCTPGP--WHIA 180 Query: 114 LM-EGVEDIP 122 M E + P Sbjct: 181 RMIEAADAFP 190
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 74.2 bits (182), Expect = 2e-18 Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 7/200 (3%) Query: 14 VTAELILQTAAQLIEIDGVKALTMRNLADRLGVAVTSIYWHIGGRDQLLDSLVERLLGE- 72 + E ++ A +L+ G+ LT R LA +LG+ ++YWH+ + LLD+L +L Sbjct: 4 LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARH 63 Query: 73 -LANLPAEGDDPVERIASLARSQRRVLIERQHLLGIAHERDRTPQLFLPIQQALAAQLAE 131 +LPA G+ + + A S RR L+ + + + + ++ L + E Sbjct: 64 HDYSLPAAGESWQSFLRNNAMSFRRALLRYRDGAKVHLGTRPDEKQYDTVETQLRF-MTE 122 Query: 132 LDVTGTEAALILRSVQVHVISSAVMQFSAVRGAKHDEEDPSLWADASPDR-ALVEALQAP 190 + + + +V H AV++ A D + P + Sbjct: 123 NGFSLRDGLYAISAVS-HFTLGAVLEQQEHTAALTDRPAAP--DENLPPLLREALQIMDS 179 Query: 191 TDYDAVFEFVLDALLATLRT 210 D + F L++L+ Sbjct: 180 DDGEQAFLHGLESLIRGFEV 199
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 106 bits (266), Expect = 4e-30 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 12/252 (4%) Query: 5 DGKNVVITGGSSGLGLAAARYLVDNGAHVL---ITGRHRDTLEAAGRRLGGNAITLASDA 61 +GK ITG + G+G A AR L GAH+ + + ++ + +A +D Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 62 SSLADIDALAARAREEFGSLDALVVNAGIGSFDAFDDVTERTFDQVFAINTKGPFFTVQR 121 A ID + AR E G +D LV AG+ +++ ++ F++N+ G F + Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 122 LAPLLAP--GSGVVLTTSIANQTGWAALSVYSASKAALRSMARTLSRELLPRGIRVNAIS 179 ++ + +V S +++ Y++SKAA + L EL IR N +S Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 180 PGSIDTGKL------EKEVPERAAQLKAEFTDSSPMRRWGHPDEFAPAVAFLAFD-ATYV 232 PGS +T E + F P+++ P + A AV FL A ++ Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 233 AGIELVVDGGES 244 L VDGG + Sbjct: 247 TMHNLCVDGGAT 258
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 106 bits (265), Expect = 7e-30 Identities = 77/253 (30%), Positives = 118/253 (46%), Gaps = 15/253 (5%) Query: 5 EGKRAVITGGTSGIGLATAQLLVDGGARVLVTGRTPASLEKARAALGPRAI------VEA 58 EGK A ITG GIG A A+ L GA + P LEK ++L A + Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 59 SDAVSGIDALVERAAAEFGAVDLLVLNAGATVTSTVDDTSEADYDALFELNTKAPFFTLQ 118 D+ + ID + R E G +D+LV AG + S+ +++A F +N+ F + Sbjct: 67 RDS-AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 119 KFLPLLPDGSAVVLTTSVSNTKGIAATSV--YSATKAALRSLTRTFARELIDRGIRVNAV 176 + D + + T SN G+ TS+ Y+++KAA T+ EL + IR N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 177 SPGPVDTGILQRTMSPDAARE-----FLDQVKASNPMQRFGLPEEVAKAILFLGFD-ATY 230 SPG +T + + + E L+ K P+++ P ++A A+LFL A + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 231 TTGTELLVDGGAS 243 T L VDGGA+ Sbjct: 246 ITMHNLCVDGGAT 258
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 33.4 bits (76), Expect = 0.002 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 224 VHVVVRQDTLDAGEPDGPSNPGGPSDPDGIPQNPSDPQHTGVPGGGPEGAEDS 276 +H + PD P+NP P++PD P NP +P + P G D+ Sbjct: 281 IHFANDDQPNNPDNPDNPNNPDNPNNPDE-PNNPDNPNNPDNPDNGDNNNSDN 332
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 76.2 bits (187), Expect = 2e-18 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 4/183 (2%) Query: 6 FVTGSSRGFGRALVRAALAAGDRVAATARRPEQLADLVTEYGDRVL---PLALDVTDAGA 62 F+TG+++G G A+ R + G +AA PE+L +V+ DV D+ A Sbjct: 12 FITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAA 71 Query: 63 AVTSIATAREHFGRVDVVVNNAGYANVAPIETGDDTDFRAQFETNFWGVYHVSKAAIPVL 122 A G +D++VN AG I + D ++ A F N GV++ S++ + Sbjct: 72 IDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYM 131 Query: 123 REQGGGLIIQFSSMGGRVGGSAGIASYQAAKFAIDGFSRVLQTETAPFGITVLVVEPSGF 182 ++ G I+ S V +A+Y ++K A F++ L E A + I +V P Sbjct: 132 MDRRSGSIVTVGSNPAGV-PRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 183 ATD 185 TD Sbjct: 191 ETD 193
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.6 bits (149), Expect = 3e-14 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%) Query: 1 MRRDAAVNRRRLLTAAEAVFAERGP-AATLDDVAAAAEVGPATLYRHFANKEELVQEVLR 59 +++A R+ +L A +F+++G + +L ++A AA V +Y HF +K +L E+ Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 60 SFFQRLIDVAGRAADAPAAD-------GLEAFLSTVGVELAEKSGL-----SAPVWGELA 107 + ++ D L L + E + + GE+A Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 108 PV-----SLVTELRDLSTELLTRAQRAGAVRQDVTPDDIA 142 V +L E D + L A + D+ A Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAA 164
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 129 bits (324), Expect = 1e-38 Identities = 88/251 (35%), Positives = 122/251 (48%), Gaps = 18/251 (7%) Query: 6 LTGRTALVTGGTAGIGLASARALAEAGASVIITGRDPEKGADAAAELGARVRF---VAAD 62 + G+ A +TG GIG A AR LA GA + +PEK + L A R AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 MADRHSVDQLAHQ-----GVIDILVNNAASFPGAMTVDQDVESFERTFATNVRGVYFLVA 117 + D ++D++ + G IDILVN A + E +E TF+ N GV+ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 118 ALAPGMIARRRGAIVNVTSMVAGKGVAGASTYSSSKAAVESLTRTWAAEFGPHGVRVNNV 177 +++ M+ RR G+IV V S AG + Y+SSKAA T+ E + +R N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 178 APGPTATEGVAAEWGEVN----------EELGRALPLGRTADPREIADAVLFLASPRASF 227 +PG T T+ + W + N E +PL + A P +IADAVLFL S +A Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 228 ITGTTLHVDGG 238 IT L VDGG Sbjct: 246 ITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.4 bits (63), Expect = 0.029 Identities = 8/89 (8%), Positives = 25/89 (28%) Query: 215 RDEHPALLLQAMDFIERNAAHDIGVGDVAAAVYLTPRTVQYMFRNHLGTTPTTYLREVRL 274 ++ +L A+ + +G++A A +T + + F++ + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 275 AHAREELLAGDRRMTTVAAVAARWKFAHT 303 E ++ + Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLE 98
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 55.9 bits (135), Expect = 5e-11 Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 26/186 (13%) Query: 1 MHVFVTGASGWIGTAVVEELLASGHDVTGL---------ARSDTSAQSLERKGIRVRRGD 51 M VTGA+G+IG V + LL +GH V G+ + + L + G + + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 LDDLAGLRAGAEDA--DATIHLAN----KHDWANMAASNAAERAATQTIGDTLAGTGRPF 105 L D G+ + + ++ N A + I + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 106 LI---ASGVAGLAEGRAATEDDPSPFHGPESPRGGS----ENLALDFV-TRGVHSVSLRF 157 L+ +S V GL + DD P S + E +A + G+ + LRF Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVD--HPVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 158 APTVHG 163 TV+G Sbjct: 179 F-TVYG 183
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 57.7 bits (139), Expect = 2e-12 Identities = 32/197 (16%), Positives = 50/197 (25%), Gaps = 20/197 (10%) Query: 24 TPERLQEAALELFAAHGYEQTTATEIAAAVGLTERTFYRHFTDKREVL---FHGQQVLAD 80 T + + + AL LF+ G T+ EIA A G+T Y HF DK ++ + + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 81 AFLAGVDGAPPTASPMEVGVQALRSASTFFPDDRRPHSRVRQSVIDKNPALQEREEHKLA 140 P P+ V + L R I + E + Sbjct: 72 ELELEYQAKFP-GDPLSVLREILI---HVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 141 VLGATLADALRGTGAD-------------GHTAEVVARTIVMAFGITFGRWISAGQQASF 187 L A + W+ A Q Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDL 187 Query: 188 DDIVTDVLRGVAEATRP 204 D + + E Sbjct: 188 KKEARDYVAILLEMYLL 204
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 34.8 bits (80), Expect = 2e-04 Identities = 15/29 (51%), Positives = 15/29 (51%) Query: 1 MNITVIGATGQIGSQVVTILRAAGHHVVG 29 M V GA G IG V L AGH VVG Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVG 29
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 48.3 bits (115), Expect = 1e-07 Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 22/218 (10%) Query: 187 IAIPLSLLVLVWVFGGLAAAVLPIVVAAASIVASIAVLRAIALWTEVSIFALNLTTALGL 246 AI L LV+ + A ++P + ++ + A+L A +++N T G+ Sbjct: 346 EAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFG-------YSINTLTMFGM 398 Query: 247 ALAI-----DYTLLILSRFRDEVAGGAERTVALRTTMATAGRTMAFSGLVVT---LSMAT 298 LAI D +++ + R + A +M+ + +V++ + MA Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 299 MLLFPVPFLRSFAYAGVATVVLCAAASLVLTPALIVLLGPRLDIRRGRHRRGGHQQPIQH 358 R F+ V+ + L +L+LTPAL L + ++ G Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTT 518 Query: 359 NPW-----YRSTAFVIRHAVPLAVAGTALLILVGVPFL 391 S ++ LI+ G+ L Sbjct: 519 FDHSVNHYTNSVGKILGS--TGRYLLIYALIVAGMVVL 554 Score = 31.7 bits (72), Expect = 0.011 Identities = 11/48 (22%), Positives = 24/48 (50%) Query: 537 SRLPLVLAVIVAVIFVVLFALTRSVVLPLKALVLNMLSLTAAFGALVW 584 ++ P ++A+ V+F+ L AL S +P+ +++ L + A Sbjct: 870 NQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATL 917
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.9 bits (184), Expect = 7e-16 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 3/127 (2%) Query: 1037 TVLLVDDDVRNVFSLGSALKRYGITVIPASNGQLGLDSLAEHPEIGLVLMDIMMPVMDGY 1096 T+L+ DDD L AL R G V SN +A LV+ D++MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDENAF 63 Query: 1097 EAMRRIRADSRWRNLPIVALTAKAMKGDRQKCLDAGASDYVTKPVDMDQLTSVLRVWLAG 1156 + + RI+ +LP++ ++A+ K + GA DY+ KP D+ +L ++ LA Sbjct: 64 DLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 1157 RPRAQPQ 1163 R + Sbjct: 122 PKRRPSK 128 Score = 56.8 bits (137), Expect = 3e-10 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 7/116 (6%) Query: 765 TKPVLLIVEDDATFARMLAELATEAGFESVVTPSGRMALALAKERQPAAITLDIGLPDMA 824 T +L+ +DDA +L + + AG++ +T + + D+ +PD Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 825 GWVVLDVLKHDLATR-HIPVNVVSGSNDDGR---GRRMGAIQTLNKPAEISDLRSM 876 D+L R +PV V+S N GA L KP ++++L + Sbjct: 62 A---FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Score = 55.2 bits (133), Expect = 1e-09 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%) Query: 890 HVLVAEDDANQRQVVKHMIESDDISITCVGTGERVLEELSGPTTYDCLVLDLGLPDIDGI 949 +LVA+DDA R V+ + + + ++ D +V D+ +PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDENAF 63 Query: 950 DLIERIKDQLKEKSLPVIVHTG 971 DL+ RIK + LPV+V + Sbjct: 64 DLLPRIKKARPD--LPVLVMSA 83
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.3 bits (211), Expect = 2e-19 Identities = 29/149 (19%), Positives = 62/149 (41%), Gaps = 3/149 (2%) Query: 35 VLIVDDDARLRELLCTVLTPLDCEIAQAGSGEEALTALLQRKVAVIVLDINMPGMDGFET 94 +L+ DDDA +R +L L+ ++ + + ++V D+ MP + F+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 95 AQLIRDVEELASTPIVFLTGQADDSDLHRGYDLGAVDFLVKP-VPRQVFYAKVKALLELD 153 I+ + P++ ++ Q + + GA D+L KP ++ +AL E Sbjct: 66 LPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 154 RSFARLRSEAARLHEQQMQDARAAEVRQR 182 R ++L ++ + A E+ + Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRV 152
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 115 bits (289), Expect = 3e-33 Identities = 73/253 (28%), Positives = 113/253 (44%), Gaps = 7/253 (2%) Query: 5 LTGRVALVTGAAQGMGSAHARRLAAAGATVAVNDIRDSPALAALADQIAGVRVA----GD 60 + G++A +TGAAQG+G A AR LA+ GA +A D ++ A R A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 ICDPAECERVVADVVTATGRLDILVANHAYMTMAPLLEHDDADWWKVVDTNLGGTFFLVQ 120 + D A + + A + G +DILV + + D +W N G F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 121 AVLPHMRAAGAGRVVVITSEWGVTGWPEATAYAAAKSGLISLVKTLGRELAPEHIIVNAV 180 +V +M +G +V + S AYA++K+ + K LG ELA +I N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 181 APGVTDTP---QLQVDARAAGLDLGTVHELYAESIPLARIGVPDEIAVAVELLSDFELEA 237 +PG T+T L D A + E + IPL ++ P +IA AV L + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 238 VVGQVISCNGGST 250 + + +GG+T Sbjct: 246 ITMHNLCVDGGAT 258
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 97.4 bits (242), Expect = 1e-26 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 22/232 (9%) Query: 6 VALVTGGASGIGAATVDMLLRRGFTVGCLDLK----ESVAGAEYTVA-------ADVSDA 54 +A +TG A GIG A L +G + +D E V + A ADV D+ Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 55 DAVREAVSELRDQLGPVSAVVTSAGYYEMAPVADITVDAWRRMLRVHLGGLVNVARATLP 114 A+ E + + ++GP+ +V AG + ++ + W V+ G+ N +R+ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 115 DLVDAR-GALVAVASELAVGGGDGDAHYAAAKGAILGFVRSLAAEVAPQGVTVNCVAPGP 173 ++D R G++V V S A A YA++K A + F + L E+A + N V+PG Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 174 TDTPL---LAADSPWRAK-------EYLTTLPLRKLATPREVARCIEYLLCD 215 T+T + L AD + + T +PL+KLA P ++A + +L+ Sbjct: 190 TETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241