>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 28.7 bits (64), Expect = 0.018 Identities = 9/51 (17%), Positives = 24/51 (47%) Query: 138 LHAVDAKVNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTHAAMSVLGH 188 + V+ +VN+ +P L + + +++ +S L +S + + A + Sbjct: 80 VSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNSPNISLSQLKAYLEGKSE 130
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 142 bits (361), Expect = 7e-40 Identities = 83/387 (21%), Positives = 149/387 (38%), Gaps = 84/387 (21%) Query: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGET------LVGQPAKRQA 58 + IDLGT N+ + + + E PS++A QD VG AK+ Sbjct: 13 LSIDLGTANTLIYVKGQGIV-LNE--------PSVVAIRQDRAGSPKSVAAVGHDAKQML 63 Query: 59 VTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAE 118 P N + AI+ + +D I F + + Sbjct: 64 GRTPGN-IAAIRPM-----------KDGVIADFFVTEK------------------MLQH 93 Query: 119 VLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA 178 +K++ + P ++ VP +R+A +++ + AG +I EP AAA+ Sbjct: 94 FIKQVHS---NSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIG 150 Query: 179 YGL--DKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRL 236 GL + TG+ V D+GGGT ++++I ++ V + +GG+ FD + Sbjct: 151 AGLPVSEATGS---MVVDIGGGTTEVAVISLNGV---------VYSSSVRIGGDRFDEAI 198 Query: 237 INYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA----QQTDVNLPYITADATG 292 INY+ + G + AE+ K E+ SA + ++ + Sbjct: 199 INYVRRNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGV 245 Query: 293 PKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD-AGLSVSDIDD--VILVGGQTRMPMV 349 P+ + + LE+L E + + + VAL+ SDI + ++L GG + + Sbjct: 246 PRGFTLN-SNEILEALQEP-LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNL 303 Query: 350 QKKVAEFFGKEPRKDVNPDEAVAIGAA 376 + + E G +P VA G Sbjct: 304 DRLLMEETGIPVVVAEDPLTCVARGGG 330
>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature. Length = 52 Score = 59.5 bits (144), Expect = 2e-16 Identities = 17/46 (36%), Positives = 30/46 (65%) Query: 23 HKAMIVALIVICITAVVAAQVTRKDLCEVHIRTGQTEIAVFTAYES 68 +++ ++++C+T ++ +TRK LCE+ R G E+A F AYES Sbjct: 5 RSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYES 50
>PF06580#Sensor histidine kinase Length = 349 Score = 34.5 bits (79), Expect = 0.001 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 5/80 (6%) Query: 4 RRQPLIPGWLILGVSAATLVVAVALAAFLALWWNAPQGDWSAVWRDS-YLWHVVRFSFWQ 62 R GWL L + L V A +W+ A +++WR ++ Sbjct: 60 RSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVAN----TSIWRLLAFINTKPVAFTLP 115 Query: 63 AFLSALLSVVPAIFLARALY 82 LS + +VV F+ LY Sbjct: 116 LALSIIFNVVVVTFMWSLLY 135
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 26.5 bits (58), Expect = 0.012 Identities = 6/23 (26%), Positives = 10/23 (43%) Query: 45 AVYKDHPLQGSWKGYRDAHVEPD 67 +VYK + + G+ A V Sbjct: 153 SVYKAFSDRVTLPGFNSAKVTSL 175
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 31.6 bits (71), Expect = 0.009 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 12/108 (11%) Query: 422 RMKEGQEK--IYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKP 479 R+ G++K +I D +A + + G + ++ + + MMN + EF P Sbjct: 99 RLFNGRDKDSTSFILGDEFAVLR-------FYRNGESISYIAYK-EAQMMNEIAEFYAAP 150 Query: 480 FQSVSKV--DESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKD 525 F+ + E+ E + D SA + ++ ID+ K +L D Sbjct: 151 FKKTRAINEKEAFECIYDSRTRSAGKDIVSVKINIDKAKKILNLPECD 198
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.7 bits (92), Expect = 4e-05 Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 31/251 (12%) Query: 404 PLPETTSQVLAARQQLQRVQGATKAKKSEPAA----ATCARPVNNAALERLASVTDRVQA 459 P E +Q + + + P+ AR + A + A T Sbjct: 983 PEVEKRNQTVDTTN----ITTPNNIQADVPSVPSNNEEIARV-DEAPVPPPAPATPSETT 1037 Query: 460 RPVPSALEKAPAKKEAYRWKATTPVMQQKE--------VVATPKALKKA---LEHEKTPE 508 V ++ E AT Q +E V A + + A E ++T Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 509 LAAKLAA---------EAIERDPWAAQVSQLSLPKLVEQVALNAWKE-ERDNAVCLRLRS 558 K A E+ +V+ PK + + E R+N + ++ Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 559 SQRHLNNRGAQQKLAEALS-MLKGSTVELTIVEDDNPAVRTPLEWRQSIYEEKLAQARES 617 Q N ++ A+ S ++ E T V N V P + + + + Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 618 IIADNNIQTLR 628 + + +++R Sbjct: 1218 KPKNRHRRSVR 1228
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.015 Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 6/125 (4%) Query: 28 QNTAFARASSNGDLPTKADLQAQLDSLNKQKDLSAQDKLVQQDLTDTLATLDKIDRVKEE 87 N RA L + + L L+ + A L++ ++ E Sbjct: 207 LNLDKKRAERLTVLARINRYENLSRVEKSR--LDDFSSLLHKQAIAKHAVLEQENKYVEA 264 Query: 88 TVQLRQKVAEAPEKMRQATAALTALSDVDND--EETRKIL--STLSLRQLETRVAQALDD 143 +LR ++ + + +A V E L +T ++ L +A+ + Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEER 324 Query: 144 LQNAQ 148 Q + Sbjct: 325 QQASV 329
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 222 bits (567), Expect = 5e-76 Identities = 215/215 (100%), Positives = 215/215 (100%) Query: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 181 APQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE 215 APQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE 215
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.0 bits (104), Expect = 7e-07 Identities = 34/209 (16%), Positives = 73/209 (34%), Gaps = 17/209 (8%) Query: 100 TYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTA 159 + Y A +L + + Q+ Q +++ ++ L +Q + Sbjct: 256 EQENKYVEAVNELR--VYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL 313 Query: 160 AKAAVETARINLAYTKVTSPISGRIGKSNV-TEGALVQNGQATALATVQQLDPIYVDVTQ 218 + + + +P+S ++ + V TEG +V + T + V + D + V Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALV 372 Query: 219 SSNDFLRLKQELANGML-----KQENGK--AKVSLITSDGIKFPQDGTLEFSDVTVDQTT 271 + D + + G KV I D I+ + G + +++++ Sbjct: 373 QNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENC 432 Query: 272 GSITLRAIFPNPDHTLLPGMFVRARLEEG 300 S + I L GM V A ++ G Sbjct: 433 LSTGNKNIP------LSSGMAVTAEIKTG 455 Score = 34.4 bits (79), Expect = 8e-04 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 49 PLQITTELPGR-TSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDS 107 ++I G+ T + R E++P + I+ + KEG + G L ++ +A Sbjct: 79 QVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA---- 134 Query: 108 AKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETA 167 D K Q++ A+L RYQ L E ++ Sbjct: 135 ---DTLKTQSSLLQARLEQTRYQILS-----RSIELNKLPELKLPDEPYFQNVSEEEVLR 186 Query: 168 RINLA 172 +L Sbjct: 187 LTSLI 191
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1365 bits (3534), Expect = 0.0 Identities = 798/1033 (77%), Positives = 913/1033 (88%), Gaps = 1/1033 (0%) Query: 1 MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60 M NFFI RPIFAWV+AII+M+AG LAIL+LPVAQYPTIAPPAV++SA+YPGADA+TVQDT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120 VTQVIEQNMNGIDNLMYMSS SDS G+V ITLTF+SGTD DIAQVQVQNKLQLA PLLPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVATNMKDAISRTSGVGDVQLFGS 180 EVQQQG+SVEKSSSS+LMV G ++ + TQ+DISDYVA+N+KD +SR +GVGDVQLFG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240 QYAMRIW++ + LNK++LTPVDVI +K QN Q+AAGQLGGTP + GQQLNASIIAQTR Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL 300 + EEFGK+ L+VN DGS V L+DVA++ELGGENY++IA NG+PA+GLGIKLATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVIYLFLQ 360 DTA AI+A+LA+++PFFP G+K++YPYDTTPFV++SIHEVVKTL EAI+LVFLV+YLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 N RATLIPTIAVPVVLLGTFA+LAAFG+SINTLTMFGMVLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480 E+ LPPKEAT KSM QIQGALVGIAMVLSAVF+PMAFFGGSTGAIYRQFSITIVSAMAL Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR 540 SVLVALILTPALCAT+LKP++ H E K GFFGWFN F+ S +HYT+SVG IL STGR Sbjct: 481 SVLVALILTPALCATLLKPVSAE-HHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 541 YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT 600 YL++Y +IV GM LF+RLPSSFLP+EDQGVF+TM+QLPAGATQERTQKVL++VT YYL Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 601 KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 660 EK NVESVF VNGF F+G+ QN G+AFVSLK W +R G+EN EA+ RA +I+D Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 661 AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHSDMLTSVRPNG 720 V FN+PAIVELGTATGFDFELIDQAGLGH+ LTQARNQLL AA+H L SVRPNG Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 721 LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR 780 LEDT QFK+++DQEKAQALGVS++DIN T+ A GG+YVNDFIDRGRVKK+YV ++AK+R Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 781 MLPDDIGNWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA 840 MLP+D+ YVR+A+G+MVPFSAF++S W YGSPRLERYNGLPSMEI G+AAPG S+G+A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 841 MELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALHESWSIPFS 900 M LME LASKLP G+GYDWTGMSYQERLSGNQAP+L AIS +VVFLCLAAL+ESWSIP S Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 901 VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL 960 VMLVVPLG++G LLAAT NDVYF VGLLTTIGLSAKNAILIVEFAKDLM+KEGKG+ Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 961 IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIF 1020 +EATL AVRMRLRPILMTSLAFILGV+PL IS GAGSGAQNAVG GVMGGMV+AT+LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1021 FVPVFFVVVRHRF 1033 FVPVFFVV+R F Sbjct: 1020 FVPVFFVVIRRCF 1032
>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature. Length = 52 Score = 55.6 bits (134), Expect = 4e-15 Identities = 17/50 (34%), Positives = 26/50 (52%) Query: 1 MLAKYALVAVIVLCLTVPGFTLLVGDSLCEFTVKERDIEFRAVLAYEPKK 50 + + V+++CLT+ FT L SLCE ++ E A +AYE K Sbjct: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.0 bits (67), Expect = 0.016 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 9/93 (9%) Query: 214 TINGNGDNDNTASIEAGQNEVDNNGDHVAAATGNYKVRIDNATGAGSIADYNGNELIYVN 273 T+ G+G + G ++ A+G +++ + N+ GS L+ Sbjct: 477 TLAGSGLFRMNVFADLGLSDKLVVMQD---ASGQHRLWVRNS---GSEPASANTLLLVQT 530 Query: 274 DKNSNATFSAVN---KADLGAYTYQAEQRGNTV 303 S ATF+ N K D+G Y Y+ GN Sbjct: 531 PLGSAATFTLANKDGKVDIGTYRYRLAANGNGQ 563
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 79.7 bits (196), Expect = 2e-19 Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 8/228 (3%) Query: 2 VGVDTKIDGNNAKWIVGAAAGFAKGDMN---DRSGQVDQDSQTAYIYSSAHFANNVF-VD 57 +G D + +W +G AG+ +GD D G D Y + + A++ F +D Sbjct: 677 LGADHAVAVAGGRWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGY---ATYIADSGFYLD 733 Query: 58 GSLSYSHFNNDLSASMSNGTYVDGSTNSDAWGFGLKAGYDFKLGDAGYVTPYGSISGLFQ 117 +L S ND + S+G V G + G L+AG F D ++ P ++ Sbjct: 734 ATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRA 793 Query: 118 SGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKQAYVYD-DSNNDND 176 G Y+ +N ++V + S+ LG++ G + + + PY K + + + D Sbjct: 794 GGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVH 853 Query: 177 VNGDSIDNGTEGSAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWS 224 NG + G+ +GLG + + S Y Y G + W+ Sbjct: 854 TNGIAHRTELRGTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWT 901
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 29.7 bits (66), Expect = 0.019 Identities = 19/69 (27%), Positives = 30/69 (43%) Query: 265 DIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYF 324 + EL + +L + QV G A F +D E L I+ A +IF+ Sbjct: 466 NQFLELEKTKQLRLDTDQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGK 525 Query: 325 ALDLAEKKI 333 L+L E++I Sbjct: 526 DLNLVERRI 534
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 33.3 bits (76), Expect = 0.002 Identities = 81/393 (20%), Positives = 144/393 (36%), Gaps = 38/393 (9%) Query: 27 FISIVSLGLLGVAVPVQIQMMTHSTWQV---GLSVTLTGGAMFVGLMVGGVLADRYERKK 83 + V +GL+ +P ++ + HS G+ + L F V G L+DR+ R+ Sbjct: 15 ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRP 74 Query: 84 VILLARGTCGIGFIGLCLNALL--PEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGR 141 V+L + G ++ + P L +Y+ + G + G A A + Sbjct: 75 VLL-------VSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVA-GAYIADITDG 126 Query: 142 ENLMQAGAITMLTVRLGSVNSPMIGGLLLAIGGVAWNYGLAAAGTFITLLPLLSLPALPP 201 + + G V P++GGL+ GG + + AA L L LP Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLM---GGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 202 PPQPREHPLK----SLLAGFRFLLASPLVGGIALLGGLLTMAS----AVRVLYPALADNW 253 + PL+ + LA FR+ +V + + ++ + A+ V++ D + Sbjct: 184 SHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG--EDRF 241 Query: 254 QMSAAQIGFLYAAIP-LGAAIGALTSGKLAHSARPGLLMLLSTLGS---FLAIGLFGLMP 309 A IG AA L + A+ +G +A ++L + ++ + Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 310 MWILGVVCLALFGWLSAVSSLLQYTMLQTQTPEVMLGRINGLWTAQNVTGDAIGAALLGG 369 M +V LA G ML Q E G++ G A +G L Sbjct: 302 MAFPIMVLLASGGIGMPALQ----AMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357 Query: 370 LGAMMTPVASASASGFGLLIIGVLLLLVLVELR 402 + A + + +G+ + L LL L LR Sbjct: 358 IYA----ASITTWNGWAWIAGAALYLLCLPALR 386
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 63.4 bits (154), Expect = 1e-13 Identities = 45/217 (20%), Positives = 84/217 (38%), Gaps = 17/217 (7%) Query: 105 EPSAEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQAL-----LTQL 159 EP+ E + P ++ SA G S + L+ IAP N+ D LT++ Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPS----PEMLARIAPGRGFNFSDGKQPLAMARKSLTEM 141 Query: 160 GEITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQML 219 ++ + A +AQ++ + + K + + ++ P S ++L Sbjct: 142 ADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEIL 201 Query: 220 EQLGFTPAKLPAGLNASQSQGKRHDIIQLGGENLAAGLNGESLFLFAGDQKDADAIYANP 279 ++ G NA Q + + + LAA + + L + KD DA+ A P Sbjct: 202 DEYGIP--------NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATP 253 Query: 280 LLAHLPAVQNKQVYALGTETFRLDYYSAMQVLDRLNS 316 L +P V+ + + F SAM + L++ Sbjct: 254 LWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDN 290
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 440 bits (1133), Expect = e-159 Identities = 144/299 (48%), Positives = 193/299 (64%), Gaps = 18/299 (6%) Query: 1 MAIPKLQAYALPESHDITQNKVDWAFEPQRAALLIHDMQDYFVSFWGENCPMMEQVIANI 60 MAIP +Q Y +P + D+ QNKV W +P RA LLIHDMQ+YFV + + ++ ANI Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60 Query: 61 AALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRSPEQQKVVDRLTPDADDTV 120 L++ C Q IPV YTAQP Q+ +DRALL D WGPGL P ++K++ L P+ DD V Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLV 120 Query: 121 LVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALAD 180 L KWRYSAF R+ L +M+++ GR+QLIITG+YAHIGC+ TA +AFM DIK F V DA+AD Sbjct: 121 LTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVAD 180 Query: 181 FSRDEHLMSLKYVAGRSGRVVMTEELL------PAPIPASKA-----------ALREVIL 223 FS ++H M+L+Y AGR VMT+ LL PA + + A +R+ I Sbjct: 181 FSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQIA 240 Query: 224 PLLDESDEPFDDD-NLIDYGLDSVRMMALAARWRKVHGDIDFVMLGKNPTIDAWWKLLS 281 LL E+ E D +L+D GLDSVR+M L +WR+ ++ FV L + PTI+ W KLL+ Sbjct: 241 ELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLT 299
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 363 bits (934), Expect = e-130 Identities = 110/258 (42%), Positives = 149/258 (57%), Gaps = 20/258 (7%) Query: 5 GKNVWVTGAGKGIGYATALAFVKAGAKVTGFD---------------QAFTQEQYPFATE 49 GK ++TGA +GIG A A GA + D +A E +P Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP---- 63 Query: 50 VMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFN 109 DV D+A + ++ R+ E +D LVN AG+LR G LS E+W+ TF+VN G FN Sbjct: 64 -ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 110 LFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRC 169 + +R G+IVTV S+ A PR M+AY +SKAA +GLELA +RC Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 170 NVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDL 229 N+VSPGST+TDMQ +LW ++ EQ I+G E FK GIPL K+A+P +IA+ +LFL S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 230 ASHITLQDIVVDGGSTLG 247 A HIT+ ++ VDGG+TLG Sbjct: 243 AGHITMHNLCVDGGATLG 260
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.4 bits (227), Expect = 1e-23 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 1/125 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+ +D+ AIR L AL G V A DL++ D+ +PD + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 EFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARMRVALRRHS 120 + + +++ +PV+V+SA++ I A + GA DYL KPF + EL + AL Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 121 ATAAP 125 + Sbjct: 124 RRPSK 128
>PF03309#Bvg accessory factor Length = 271 Score = 33.2 bits (76), Expect = 0.002 Identities = 10/53 (18%), Positives = 23/53 (43%) Query: 3 IVSVDIGSTWTKAALFTREGDALTLVNHVLTPTTTHHLAKGFFSSLNQVLNVD 55 ++++D+ +T T L + GD +V T A +++ ++ D Sbjct: 2 LLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDGLIGDD 54
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 60.5 bits (146), Expect = 8e-12 Identities = 34/199 (17%), Positives = 69/199 (34%), Gaps = 8/199 (4%) Query: 99 EQERLKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADAKAAEE 158 E E+ Q QA+ + E A A ++ E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVP----SNNEEIARVDEAPVPPPAPATPSETTET 1039 Query: 159 AAK--KAAADAKKKAEAEAAKAAAEAQKKAEAAAAALKKKAEAAEAA--AAEARKKAATE 214 A+ K + +K E +A + A+ ++ A+ A + +K + E A +E ++ TE Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 215 AAEKAKAEAEKKAAAEKAAADKKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAADKK 274 E A E E+KA E + + K+ + +A ++ + + Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 275 AAAAKAAAEKAAAAKAAAE 293 + A + A + ++ Sbjct: 1160 SQTNTTADTEQPAKETSSN 1178 Score = 57.4 bits (138), Expect = 7e-11 Identities = 30/236 (12%), Positives = 85/236 (36%), Gaps = 11/236 (4%) Query: 68 QSQESSAKRSDEQRKMKEQQAAEELREKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQA 127 Q+ S ++E+ ++ +E ++ + +K E+ A + Sbjct: 1004 QADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN--EQDATET 1061 Query: 128 ELKQKQ-AEEAAAKAAAD------AKAKAEADAKAAEEAAKKAAADAKKKAEAEAAKAAA 180 + ++ A+EA + A+ A++ +E E + A + ++KA+ E K Sbjct: 1062 TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQE 1121 Query: 181 EAQKKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAKAEAEKKAAAEKAAADKKAAA 240 + ++ + ++++E + A AR+ T ++ +++ A E+ A + + Sbjct: 1122 VPKVTSQVSPK--QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNV 1179 Query: 241 EKAAADKKAAEKAAAEKAAADKKAAAEKAAADKKAAAAKAAAEKAAAAKAAAEADD 296 E+ + + + A ++ K + ++ + Sbjct: 1180 EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVE 1235 Score = 56.6 bits (136), Expect = 1e-10 Identities = 28/228 (12%), Positives = 75/228 (32%), Gaps = 2/228 (0%) Query: 66 RMQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125 R ++E+ + + + Q+ E +E Q E + +EKE A E +K E Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV 1125 Query: 126 QAELKQKQAEEAAAKAAADAKAKAEADAKAAEEAAK--KAAADAKKKAEAEAAKAAAEAQ 183 +++ KQ + + A+ + + E ++ A + E + + Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE 1185 Query: 184 KKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAKAEAEKKAAAEKAAADKKAAAEKA 243 ++ + E A + + + K + ++ ++ +++ Sbjct: 1186 STTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245 Query: 244 AADKKAAEKAAAEKAAADKKAAAEKAAADKKAAAAKAAAEKAAAAKAA 291 +D +A A+ A + A ++ ++ + Sbjct: 1246 TVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQ 1293 Score = 55.8 bits (134), Expect = 2e-10 Identities = 32/265 (12%), Positives = 86/265 (32%), Gaps = 14/265 (5%) Query: 51 DAVMVDSGAVVEQYKRMQSQESSAKRSDEQRKMKEQQAAE-ELREKQAAEQER------L 103 D V A + ++ ++K+ + + EQ A E + ++ A++ + Sbjct: 1021 DEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANT 1080 Query: 104 KQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADAKAAEEAAKKA 163 + E + ++ ++ Q K+ +K+ KA + + E ++ + K+ Sbjct: 1081 QTNEVAQSGSETKETQ-TTETKETATVEKE-----EKAKVETEKTQEVPKVTSQVSPKQE 1134 Query: 164 AADA-KKKAEAEAAKAAAEAQKKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAKAE 222 ++ + +AE K+ ++ + A+ ++ + Sbjct: 1135 QSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNS 1194 Query: 223 AEKKAAAEKAAADKKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAADKKAAAAKAAA 282 + A + +++ K + + + + A + A + Sbjct: 1195 VVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTS 1254 Query: 283 EKAAAAKAAAEADDIFGELSSGKNA 307 A + A A F L+ GK Sbjct: 1255 TNTNAVLSDARAKAQFVALNVGKAV 1279
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 45.9 bits (109), Expect = 1e-07 Identities = 42/201 (20%), Positives = 65/201 (32%), Gaps = 34/201 (16%) Query: 16 AFLFLFAPTAFAAEQTVEAPSVDARAW----------ILMDYASGKVLAEGNADEKLDPA 65 + L A A P + I MD ASG+ L ADE+ Sbjct: 7 CIISLLATLPLAV-HASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMM 65 Query: 66 SLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWVTGNPALRGSSVMFLKPGDQVSVADLN 125 S K++ V + A +L + + V +P V D ++V +L Sbjct: 66 STFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSP------VSEKHLADGMTVGELC 119 Query: 126 KGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTT---FQTVHGLDAPGQF- 181 I S N A L V G + + +++G T ++T PG Sbjct: 120 AAAITMSDNSAANLLLATVGGPAG-----LTAFLRQIGDNVTRLDRWETELNEALPGDAR 174 Query: 182 --STARDMA------LLGKAL 194 +T MA L + L Sbjct: 175 DTTTPASMAATLRKLLTSQRL 195
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 236 bits (603), Expect = 5e-74 Identities = 125/277 (45%), Positives = 180/277 (64%), Gaps = 6/277 (2%) Query: 4 RSNDSYTSKKNYAWMTSNTSIDNEGHTTQNLGLTETLLDDGNLSYSVQQGYNSEGKTANG 63 S+ +A + + S D G T G+ TLL+D NLSYSVQ GY G +G Sbjct: 605 WLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSG 664 Query: 64 S---ASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIA 120 S A+++Y+G + +A +GY++SD+ +QL Y +SG ++AH+ G+TLGQ L +T VL+ Sbjct: 665 STGYATLNYRGGYGNANIGYSHSDD--IKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVK 722 Query: 121 VPGAENTRVANSTGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTK 180 PGA++ +V N TG++TDWRGY V+PYAT YRENR+ALD +L NVDL+NAV NVVPT+ Sbjct: 723 APGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTR 782 Query: 181 GALVLAEFNAHAGARVLMKTTKQGIPLRFGAIATLDGVQTNSGIIDDDGSLYMAGLPAKG 240 GA+V AEF A G ++LM T PL FGA+ T + Q +SGI+ D+G +Y++G+P G Sbjct: 783 GAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQ-SSGIVADNGQVYLSGMPLAG 841 Query: 241 TITVRWGEASDQICHISYQLTEQQINSAITRMDAICR 277 + V+WGE + C +YQL + +T++ A CR Sbjct: 842 KVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR 878
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 31.6 bits (71), Expect = 0.004 Identities = 13/48 (27%), Positives = 22/48 (45%) Query: 294 VGVVVTDSQNNIISPAGGTLPLSIPDDADSIARMNVYPVSTTGVPPET 341 + V TD + I+ A T L++ D +S N+Y ++ P T Sbjct: 188 LTVPSTDIEKEILDLAAATERLNLTDALNSNPAGNLYDWRSSNSYPWT 235
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.4 bits (159), Expect = 2e-15 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 8/155 (5%) Query: 20 KKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLA 79 ++ IL AL FSQ G T L +IA+ AGV++ + ++F K L+ + Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 80 PLKAFREDF--APLAAIKEYIRLKLEVSRDYPQASRLFCM-----EMLAGAPLLMDELTG 132 ++ F PL+ ++E + LE + + L + E + ++ Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 133 DLKALIDEKSALIAGWVKSGKL-APIDPQHLIFMI 166 D + +++ L A + + ++ Sbjct: 133 LCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIM 167
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 28.2 bits (63), Expect = 0.032 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 3/28 (10%) Query: 238 YKPAAADIPVAS---DNPAHYADAIRYN 262 + ++ +S NP H A I Y Sbjct: 247 SRNMRENVKRSSVVVANPTHIAIGILYK 274
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.2 bits (203), Expect = 2e-20 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL+ +D+ + + Q LS AGY + S+ D L++ D+++P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 +L ++ A PV+ ++A+++ ++ + GA DYL KPF +EL+ + L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 31.4 bits (71), Expect = 0.001 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Query: 37 TKEHLLPHFL-EHLGNNHLDI------GVGTGFYLTHVPESSLISLMDLNEASLNAASTR 89 T EHL F+ HL + ++I G TGFY++ + S + D A++ Sbjct: 54 TLEHLYAGFMRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKV 113 Query: 90 AGESKI 95 ++KI Sbjct: 114 ENQNKI 119
>PF05844#YopD protein Length = 295 Score = 33.1 bits (75), Expect = 0.001 Identities = 12/28 (42%), Positives = 22/28 (78%), Gaps = 2/28 (7%) Query: 76 MDLLALLYRLMAKSRQMGMFSLERDIEN 103 ++LL +L+R+ K+R++G+ L+RD EN Sbjct: 74 VELLLILFRIAQKARELGV--LQRDNEN 99
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 29.4 bits (66), Expect = 0.025 Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 20/137 (14%) Query: 170 SVLTNAKADATRIDNGGVMDVAGNATNTIING--GTQNIYNHGIATGTNINSGTKNIKSG 227 +A + NG + + G N ++ + TG + +G Sbjct: 614 WRHASASYSMSHDLNGRM------TNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTG 667 Query: 228 GKADTTNISSGSKQA-VEKGGTATGSNIRAGGTLIVHTGGIAHGVYLDMGSALVA----- 281 G+ G ++ H G+ G L+ LV Sbjct: 668 YATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAK 727 Query: 282 ------NTGAGTDIDGY 292 TG TD GY Sbjct: 728 DAKVENQTGVRTDWRGY 744
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 241 bits (617), Expect = 1e-69 Identities = 223/883 (25%), Positives = 343/883 (38%), Gaps = 97/883 (10%) Query: 70 NNGGTLDVREKGSATGIQQSSQGAL-VATTRATRVTGTRADGVAFSIEQGAANNILLANG 128 NN + E+ IQ S G + A+ +V+G +A G+ + A + NG Sbjct: 37 NNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVSGRQAQGILL---ENPAAELQFRNG 93 Query: 129 GVLT----VESDTSSDKTQVNTGGREIVKTKATATGTTLTGGEQ----IVEGVANETTIN 180 V + + V ++V AT T + V G + +I Sbjct: 94 SVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIA 153 Query: 181 DGGIQTVSANGEAIKTKINEGGTLTVNDNGKATDIVQN--------SGAALQTSTANGIE 232 D +Q + + D G +Q+ S L+ + + Sbjct: 154 DSTLQGAGGVQIERGANVTVQR-SAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVP 212 Query: 233 ISGTHQY------------GTFSIAGNLATNMLLENGGNLLVLAGTEAHDSTVG---KGG 277 SG G G A ++ L A D+ G GG Sbjct: 213 ASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDAPAGGAVPGG 272 Query: 278 AMQN------LGQDSATKVNSG--GQYTLGRSKDEFQPLARAEDLQVA-----GGTAIVY 324 A+ G V G G G S + Q + A +L A G V Sbjct: 273 AVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARVTVS 332 Query: 325 AGTLA--DASVSGATGSLSLMTPRDNVTPVKLEGAIRI----------PDSATLTIGNGV 372 G+L+ +V G+ P+ + L+ P+ LT+ G Sbjct: 333 GGSLSAPHGNVIETGGARRFA-PQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGA 391 Query: 373 DTTLADLTA----------ASRGNVWLNSNNSCAG---------------TSNCEYRVNS 407 D D+ A +V L S G V + Sbjct: 392 DA-QGDIVATELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGA 450 Query: 408 L-LLNDGDVYLSAPATTNGIYNTLTTSELFGSGNFYLHTNVAGSRGDQLVVNNNATGNFK 466 L L +DG V PA G + LT + L GSG F ++ D+LVV +A+G + Sbjct: 451 LRLASDGSVDFQQPAEA-GRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHR 509 Query: 467 IFVQDTGVSPQSDDAMTLVKT-GGGDASFTLGNTGGFVDLGTYEYVLKSDGNSNWNLTNN 525 ++V+++G P S + + LV+T G A+FTL N G VD+GTY Y L ++GN W+L Sbjct: 510 LWVRNSGSEPASANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGA 569 Query: 526 VNPNPNPNPNPNPNPNPNPNPNPTPD-PTPTPVPEKRITPSTAAVLNMA--ATLPLVFDV 582 P P P P P P P P P P P+ P P P + ++ + A +N ++ Sbjct: 570 KAP-PAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYA 628 Query: 583 ELNSIRERLNIMKASPHNNNVWGAMYNTRNNVTTDAGAGFEQTLTGMTVGIDSRNDIPEG 642 E N++ +RL ++ +P WG + R + AG F+Q + G +G D + G Sbjct: 629 ESNALSKRLGELRLNPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVAGG 688 Query: 643 IATLGAFMGYSHSHIGFDRGGHGSVDSYSLGGYASWEHESGFYLDGVVKLNRFESNVAGK 702 LG GY+ GF G G DS +GGYA++ +SGFYLD ++ +R E++ Sbjct: 689 RWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIADSGFYLDATLRASRLENDFKVA 748 Query: 703 MSSGGAANGSYHSNGLGGHIETGMRFT-DGNWNLTPYASLTGFTADNPEYHLSNGMESKS 761 S G A G Y ++G+G +E G RFT W L P A L F A Y +NG+ + Sbjct: 749 GSDGYAVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRVRD 808 Query: 762 VDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNSDGNFINDLSGRR 821 S+ LG + + L G +V+P++KA+V +EF V N + +L G R Sbjct: 809 EGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAH-RTELRGTR 867 Query: 822 GIYQAGIKASFSSTLSGHLGVGYSHGAGVESPWNAVAGVNWSF 864 G+ A+ S + YS G + PW AG +S+ Sbjct: 868 AELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW 910
>SECA#SecA protein signature. Length = 901 Score = 54.1 bits (130), Expect = 2e-11 Identities = 16/28 (57%), Positives = 19/28 (67%) Query: 125 IDGTRPQFGRNDPCPCGSGKKIKKCCGQ 152 + GRNDPCPCGSGKK K+C G+ Sbjct: 872 AQTGERKVGRNDPCPCGSGKKYKQCHGR 899
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.5 bits (222), Expect = 7e-22 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 3/152 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+ +D+ R++L+ S G + ++ + DL++ D+ MP N L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 L I+ PVLV+SA KA G D L KP DL L ++ L + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF-DLTELIGIIGRAL--AEP 122 Query: 130 NSRVEEEERLFRDWDAMVDNPAAAAKLLQELQ 161 R + E +D +V AA ++ + L Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLA 154
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.008 Identities = 9/16 (56%), Positives = 11/16 (68%) Query: 55 VVGESGCGKSTFARAI 70 + GESG GK ARA+ Sbjct: 165 ITGESGTGKELVARAL 180
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 31.2 bits (70), Expect = 5e-04 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 2/57 (3%) Query: 41 GPMPAVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEHVSVKPFKKV 97 P+PA G GS E + EA W +P A V +V KV Sbjct: 268 APLPA--EGKFAVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAVFNVAAAAKV 322
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 255 bits (653), Expect = 2e-88 Identities = 234/239 (97%), Positives = 234/239 (97%) Query: 1 MTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQA 60 MTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMV PADLEPPQA Sbjct: 1 MTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVTPADLEPPQA 60 Query: 61 VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR Sbjct: 61 VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Query: 121 PASPFENTAPTRPTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKF 180 PASPFENTAP R TSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKF Sbjct: 121 PASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKF 180 Query: 181 DVTPDGRVDNVQILLAKPANMFEREVKNAMRRWRYEPGKSGSGIVVNILFKINGTTEIQ 239 DVTPDGRVDNVQIL AKPANMFEREVKNAMRRWRYEPGK GSGIVVNILFKINGTTEIQ Sbjct: 181 DVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTEIQ 239
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 120 bits (303), Expect = 3e-34 Identities = 49/283 (17%), Positives = 112/283 (39%), Gaps = 40/283 (14%) Query: 3 IIIFRVLTFFFVIFSVNVVAKE----FTLDFSTAKTYVDSLNVIRSAIGTPLQTISSGGT 58 +I F V + + + A E F L +T+ +Y ++ +R A+ + Sbjct: 1 MIRFLVFSLLILTLFLTAPAVEGDVSFRLSGATSSSYGVFISNLRKALPYERKL-----Y 55 Query: 59 SLLMIDSGTGDNLFAVDVRGIDPEEGRFNNLRLIVERNNLYVTGFVNRTNNVFYRFADF- 117 + ++ S + + + + + + ++ N+YV G+ + Y F + Sbjct: 56 DIPLLRSTLPGSQRYALIHLTNYADE---TISVAIDVTNVYVMGYRA--GDTSYFFNEAS 110 Query: 118 ----SHVTFPGTTA-VTLSGDSSYTTLQRVAGISRTGMQINRHSLTTSYLDLMSHSGTSL 172 + F VTL +Y LQ AG R + + +L ++ L ++ Sbjct: 111 ATEAAKYVFKDAKRKVTLPYSGNYERLQIAAGKIRENIPLGLPALDSAITTLFYYNA--- 167 Query: 173 TQSVARAMLRFVTVTAEALRFRQIQRGFRTTLDDLSGRSYVMTAEDVDLTLNWGRLSSVL 232 S A A++ + T+EA R++ I++ +D +++ + + L +W LS + Sbjct: 168 -NSAASALMVLIQSTSEAARYKFIEQQIGKRVDK----TFLPSLAIISLENSWSALSKQI 222 Query: 233 PDYHGQDSV----------RVGRISFGSINA--ILGSVALILN 263 + + R++ +++A + ++AL+LN Sbjct: 223 QIASTNNGQFETPVVLINAQNQRVTITNVDAGVVTSNIALLLN 265
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 26.0 bits (57), Expect = 0.024 Identities = 7/36 (19%), Positives = 17/36 (47%) Query: 38 DTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIK 73 D F + +G+++ F + + ++AQI + Sbjct: 293 DPFVLSIGNRKKFLCQPGVVGKKIAAQILERIESTS 328
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.5 bits (61), Expect = 0.007 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 6/40 (15%) Query: 50 GIKELLTEM-AFNGAGV-----RDTARTLKIGINTVIRTL 83 IK L E+ F G+ DT +++ I+ V++TL Sbjct: 305 AIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTL 344
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 29.7 bits (66), Expect = 0.016 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 13/81 (16%) Query: 165 ETTSALHTYFNVGDIAKVSVSGLGNRFIDKVNDAKED-----------VLTDGIQTFPDR 213 E ++AL + N D K S S L N F ++V + + V ++ F + Sbjct: 57 EMSAALAQFRNRRDYEKKS-SNLSNSF-ERVLEDEALPKAKQILKLISVHGGALEDFLRQ 114 Query: 214 TDRVYLNPQDCSVINDEALNR 234 ++ +P D ++ E L R Sbjct: 115 ARSLFPDPSDLVLVLRELLRR 135
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.0 bits (70), Expect = 0.011 Identities = 33/142 (23%), Positives = 48/142 (33%), Gaps = 23/142 (16%) Query: 71 MFLGALVGGIIGDKTGRRNAFILYEAIHIASMVVGAFSPNMDF-LIACRFVMGVGLGALL 129 +G V G + D+ G + + I+ V+G + LI RF+ G G A Sbjct: 62 FSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFP 121 Query: 130 VTLFAGFTEYMPGRNR----GTWSSRVSFIGNWSYPLCSLIAMGLTPLISA----EWNWR 181 + Y+P NR G S V+ + G+ P I +W Sbjct: 122 ALVMVVVARYIPKENRGKAFGLIGSIVA------------MGEGVGPAIGGMIAHYIHWS 169 Query: 182 VQLLIPAILSLIATALAWRYFP 203 LLIP I I T Sbjct: 170 YLLLIPMI--TIITVPFLMKLL 189
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 133 bits (337), Expect = 2e-39 Identities = 38/247 (15%), Positives = 78/247 (31%), Gaps = 53/247 (21%) Query: 17 AFVFADKPDVAKSAN------NEVSTLFFDHDDRVPVNDTTQSPWDAVGQLET---ASGN 67 P + K N E + + ++DR + DTT + V ++ Sbjct: 43 QSSKQQTPKIQKGGNLKPLEQREHANVILPNNDRHQITDTTNGHYAPVTYIQVEAPTGTF 102 Query: 68 LCTATLIAPNLALTAGHCLLTPPKGKADKAVALRFV------SNKGLWRYDIHDI---EG 118 + + ++ + LT H + AL+ N + I G Sbjct: 103 IASGVVVGKDTLLTNKHVV----DATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSG 158 Query: 119 RVGPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITPLPLFEGDKAALTAALKAA 178 + K + ++ + P + A Sbjct: 159 EGDLAIVK-FSPNEQN-----------------KHIGEVVKPATM-------SNNAETQV 193 Query: 179 GRKVTQAGYPEDH-LDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTNDGWQL 237 + +T GYP D + T++ + ++T + + M + T G+SGSP+ N+ ++ Sbjct: 194 NQNITVTGYPGDKPVATMWESKG-KIT-YLKGEAMQYDLSTTGGNSGSPVF---NEKNEV 248 Query: 238 IGVQSSA 244 IG+ Sbjct: 249 IGIHWGG 255
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 26.6 bits (58), Expect = 0.021 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 4/91 (4%) Query: 12 AMGLSSAAFAAETATTPAPTATTTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQ 71 + + A T T A T + + + +K T+ Q Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQ 1120 Query: 72 KAPEQKAQAAKKHAGKHSHQQPAKPAAQPAA 102 + P+ +Q + K + Q P A+PA Sbjct: 1121 EVPKVTSQVSPKQEQSETVQ----PQAEPAR 1147
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 46.8 bits (111), Expect = 1e-07 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 16/117 (13%) Query: 45 GAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGA 104 G ++GK+ D++G K++L I + + + V ++ + + A R IQG GA Sbjct: 65 GTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMA-------RFIQGAGA 117 Query: 105 GAEISGAGTMLAEYAPKGKR----GIISSFVAMGTNCGTLSTTAI-----WAFIFFI 152 A + ++A Y PK R G+I S VAMG G I W+++ I Sbjct: 118 AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI 174
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 100 bits (251), Expect = 9e-28 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 16/244 (6%) Query: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQ---LDVRNR 58 I +TGA G GE + R QG + A E+L+++ L A+ DVR+ Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 59 AAIEEMLASLPAEWSNIDILVNNAGLALGMEPAHKASIEDWETMIDTNNKGLVYMTRAVL 118 AAI+E+ A + E IDILVN AG+ L H S E+WE N+ G+ +R+V Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 119 PGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPG 178 M++R G I+ +GS P Y ++KA F+ L +L +R + PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 179 LVGGTEFSNVRFKGDDGKAE------KTYQNTVALT----PEDVSEAV-WWVSTLPAHVN 227 T+ + ++G + +T++ + L P D+++AV + VS H+ Sbjct: 189 ST-ETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 228 INTL 231 ++ L Sbjct: 248 MHNL 251
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.5 bits (100), Expect = 2e-06 Identities = 41/239 (17%), Positives = 81/239 (33%), Gaps = 18/239 (7%) Query: 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLI---GYAMTIALTIGVVFSLGF 63 R +L++ L +G G +P + L R S D+ G + + + + Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLL-RDLVHSNDVTAHYGILLALYALMQFACAPVL 63 Query: 64 GILADKFDKKRYMLLAITAFTSGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAWFAD 123 G L+D+F ++ +L+++ + + + ++ + + + A A+ AD Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIAD 122 Query: 124 NLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQIWVK 183 + + F G GP LG L+ S + PF+ AA + L + Sbjct: 123 ITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLP 182 Query: 184 RSEK---------IIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYV 233 S K + W + A L F+ V A+ + Sbjct: 183 ESHKGERRPLRREALNPLASFRW--ARGMTVVAALMAV--FFIMQLVGQVPAALWVIFG 237
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 143 bits (363), Expect = 2e-45 Identities = 65/113 (57%), Positives = 83/113 (73%), Gaps = 11/113 (9%) Query: 1 MTTYG------DGYISNKAQSFEVVAQYQFDFGLRPSLAYLKSKGRDLGR----YGDQDM 50 MT YG DG ++NK Q+FEV AQYQFDFGLRP++++L SKG+DL D+D+ Sbjct: 271 MTPYGKTDKGYDGGVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDL 330 Query: 51 IEYIDVGATYFFNKNMSTYVDYKINLIDESD-FTRAVDIRTDNIVATGITYQF 102 ++Y DVGATY+FNKN STYVDYKINL+D+ D F + I TD+IVA G+ YQF Sbjct: 331 VKYADVGATYYFNKNFSTYVDYKINLLDDDDPFYKDAGISTDDIVALGMVYQF 383
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.011 Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 4/137 (2%) Query: 439 REAESVPQDESAPQPEPVDPVAQHRESMQGMNREQLLEQYADADMAHEGDTSAVHRREAA 498 E + + P P P P + +E + + D + +EA Sbjct: 1014 NEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAK 1073 Query: 499 SQLLNELDEQAKRQAVMDELKAKPR----PELLEEYRKLSLKEGRTDTEEQQLQAIRDVL 554 S + Q+ + + + +E+ K ++ +T + + Sbjct: 1074 SNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQ 1133 Query: 555 RPQREARPEAQPQPENA 571 +P+A+P EN Sbjct: 1134 EQSETVQPQAEPAREND 1150
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 26.3 bits (58), Expect = 0.038 Identities = 13/47 (27%), Positives = 24/47 (51%) Query: 37 FAGLLSDRFGRRPFIMLGMCFYMAFFLGILQTNNIIIAYVFGFLAGM 83 G LSDRFGRRP +++ + + + + + Y+ +AG+ Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI 108
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 28.9 bits (64), Expect = 0.009 Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 49 QGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVYWLGGRGVTLMGS 108 Q +I L IG + + LPPS ++ N ++ A V LG +TL G Sbjct: 174 QRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGG 233 Query: 109 QL 110 + Sbjct: 234 HI 235
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 30.0 bits (67), Expect = 6e-04 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 5/37 (13%) Query: 4 LSWIIFGLIAGILAKWIMPG-----KDGGGFFMTILL 35 + I+ G I+G++ W+ K ++ ILL Sbjct: 163 AAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILL 199
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 108 bits (272), Expect = 7e-28 Identities = 81/388 (20%), Positives = 166/388 (42%), Gaps = 14/388 (3%) Query: 64 MAVLDGAIANVALPTIATDLHATPASSIWVVNAYQIAIVISLLSFSFLGDMFGYRRIYKC 123 +VL+ + NV+LP IA D + PAS+ WV A+ + I + L D G +R+ Sbjct: 25 FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLF 84 Query: 124 GLVVFLLSSLFFALSDS-LQMLTLARVIQGFGGAALMSVNTALIRLIYPQRFLGRGMGIN 182 G+++ S+ + S +L +AR IQG G AA ++ ++ P+ G+ G+ Sbjct: 85 GIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLI 144 Query: 183 SFIVAVSSAAGPTIAAAILSIASWKWLFLINVPLGIIALLLAIRFLPPNGSRASKPRFDL 242 IVA+ GP I I W +L LI + + II + ++ L K FD+ Sbjct: 145 GSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKEVRI--KGHFDI 201 Query: 243 PRAVMNALTFGLLITALSGFAQGQSLTLIAAELVVMVVVGIFFIRRQLSLTVPLLPVDLL 302 ++ + I F S++ L+V V+ + F++ +T P + L Sbjct: 202 KGIIL----MSVGIVFFMLFTTSYSISF----LIVSVLSFLIFVKHIRKVTDPFVDPGLG 253 Query: 303 RIPLFSLSICTSVCSFCAQMLAMVSLPFYLQTVLGRSEVETG-LLLTPWPLATMVMAPLA 361 + F + + F + +P+ ++ V S E G +++ P ++ ++ + Sbjct: 254 KNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIG 313 Query: 362 GYLIERVHAGLLGALGLFIMAAGLFSLVLLPASPADINIIWPMILCGAGFGLFQSPNNHT 421 G L++R + +G+ ++ + L + + + ++ G ++ + Sbjct: 314 GILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWF-MTIIIVFVLGGLSFTKTVISTI 372 Query: 422 IITSAPRERSGGASGMLGTARLLGQSSG 449 + +S ++ +G +L L + +G Sbjct: 373 VSSSLKQQEAGAGMSLLNFTSFLSEGTG 400
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 66.2 bits (161), Expect = 6e-13 Identities = 49/288 (17%), Positives = 89/288 (30%), Gaps = 36/288 (12%) Query: 513 PSEEEFTERKRPEQPALATFAMPDVPPAPT-PAEPAAPVVAPAPKAAPATPAAPAQPGLL 571 P E+ + DVP P+ E A AP P APATP+ + Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE---- 1038 Query: 572 SRFFGALKALFSSGEETKPSEQAAPKVEAKPERQQDRRKPRQNNRRDRNERRDTRSER-- 629 + E +K + K E QN + + + ++ Sbjct: 1039 -----------TVAENSKQESKTVEKNEQDATE-----TTAQNREVAKEAKSNVKANTQT 1082 Query: 630 TEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTDEQQAPRRERSRRRNDDKRQ 689 E + + E + + ++TA + + TEK + + + + + + Q Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142 Query: 690 AQ---QEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSV--AEEAVVAPV 744 A+ + +N++E Q + +P + + Q V +V V P Sbjct: 1143 AEPARENDPTVNIKEPQSQTNTTADTEQPA--KETSSNVEQPVTESTTVNTGNSVVENPE 1200 Query: 745 VEETAAAEPIVQEAPA------PRTELVKVPLPVVAQTAPEQQEENNA 786 A +P V + R + VP V T A Sbjct: 1201 NTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248 Score = 38.9 bits (90), Expect = 1e-04 Identities = 48/302 (15%), Positives = 83/302 (27%), Gaps = 35/302 (11%) Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 + + NQ V A P V + + P+P A P + Sbjct: 984 EVEKRNQTVDTTN--------ITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSE 1035 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 E A+N + R + + VA + E Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 841 KVWIRYPIVRPQDVQVEEQREQEEVQVQPMVTEIPVAAAVEPVVSAPVVEEVAEVVEPPV 900 + V+ EE+ + E + Q E+P + +E +E V+P Sbjct: 1096 Q---TTETKETATVEKEEKAKVETEKTQ----EVPKVTS-----QVSPKQEQSETVQPQ- 1142 Query: 901 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEHAEPVVEPQEETADIEEV 960 AEP E T + ++PQ T + Q E + V +P E+ + Sbjct: 1143 --AEPARENDPTVN--------IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG 1192 Query: 961 AETAEVVVAEPEVVAQPAAPVVAEVATEVETVTAVKPEITVEHNHVTAPMTRAPAPEYVP 1020 E QP + + +V+ +V T + V Sbjct: 1193 NSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPH----NVEPATTSSNDRSTVA 1248 Query: 1021 EA 1022 Sbjct: 1249 LC 1250
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 511 bits (1318), Expect = 0.0 Identities = 312/313 (99%), Positives = 312/313 (99%) Query: 1 MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG 60 MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG Sbjct: 1 MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG 60 Query: 61 LFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEEPTPAAPMKFPLET 120 LFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEE TPAAPMKFPLET Sbjct: 61 LFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLET 120 Query: 121 VVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL 180 VVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL Sbjct: 121 VVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL 180 Query: 181 ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL 240 ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL Sbjct: 181 ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL 240 Query: 241 EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK 300 EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK Sbjct: 241 EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK 300 Query: 301 VSKTYSMNIDNLF 313 VSKTYSMNIDNLF Sbjct: 301 VSKTYSMNIDNLF 313
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 424 bits (1092), Expect = e-151 Identities = 157/363 (43%), Positives = 213/363 (58%), Gaps = 9/363 (2%) Query: 4 FLSALILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVGLDGTGDQTTQTPFTTQTLN 63 F + L A RI+D+ S+Q R N LIGYGLVVGL GTGD +PFT Q++ Sbjct: 13 FSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMR 72 Query: 64 NMLSQLGITVPTGTNMQLKNVAAVMVTASLPPFGRQGQTIDVVVSSMGNAKSLRGGTLLM 123 ML LGIT G + KN+AAVMVTA+LPPF G +DV VSS+G+A SLRGG L+M Sbjct: 73 AMLQNLGITTQGGQS-NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIM 131 Query: 124 TPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQLNGGRITNGAVIERELPSQFGVGN 183 T L G D Q+YA+AQG ++V G A +++ R+ NGA+IERELPS+F Sbjct: 132 TSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSV 191 Query: 184 TLNLQLNDEDFSMAQQIADTINRVR----GYGSATVLDARTIQVRVPSGNSSQVRFLADI 239 L LQL + DFS A ++AD +N G A D++ I V+ P + R +A+I Sbjct: 192 NLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRV-ADLTRLMAEI 250 Query: 240 QNMQVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVAQGNLSVTVNRQANVSQPDTPFGG 299 +N+ V T AKVVIN RTG++V+ +V + AV+ G L+V V V QP PF Sbjct: 251 ENLTVE-TDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQP-APFSR 308 Query: 300 GQTVVTPQTQIDLRQSGGSLQSVRSSASLNNVVRSLNALGATPMDLMSILQSMQSAGCLR 359 GQT V PQT I Q G + ++ L +V LN++G +++ILQ ++SAG L+ Sbjct: 309 GQTAVQPQTDIMAMQEGSKV-AIVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQ 367 Query: 360 AKL 362 A+L Sbjct: 368 AEL 370
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 346 bits (889), Expect = e-124 Identities = 231/232 (99%), Positives = 231/232 (99%) Query: 1 MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVLGPTPVANGSIFQSAQPINY 60 MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPV GPTPVANGSIFQSAQPINY Sbjct: 1 MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINY 60 Query: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA 120 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA 120 Query: 121 RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF 180 RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF Sbjct: 121 RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF 180 Query: 181 SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232 SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM Sbjct: 181 SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.5 bits (97), Expect = 5e-06 Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 354 TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 402 L+N S V+L +E N+ Q+ Y +NAQ ++T + I + L+N+R Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 37.2 bits (86), Expect = 1e-04 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 6 AVSGLNAAATNLDVIGNNIANSATYGFKSGTASFAD----MFAGSKVGLGVKVAGI 57 A+SGLNAA L+ NNI++ G+ T A + AG VG GV V+G+ Sbjct: 7 AMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGV 62
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 179 bits (456), Expect = 1e-55 Identities = 84/360 (23%), Positives = 146/360 (40%), Gaps = 48/360 (13%) Query: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLT--YAGNL-ESLADVSDSKRYVFEHA 57 MK LVTG AGFIG V + ++ VV +D L Y +L ++ ++ + F Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 58 DICDAAAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSA 117 D+ D M +FA + V V S+ P A+ ++N+ G +LE R+ Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN--- 116 Query: 118 LDGDKKNSFRFHHISTDEVYGDLPHPDEVNNKEQLPLFTETTAYAPSSPYSASKASSDHL 177 + S+ VYG ++P T+ + P S Y+A+K +++ + Sbjct: 117 ------KIQHLLYASSSSVYGL---------NRKMPFSTDDSVDHPVSLYAATKKANELM 161 Query: 178 VRAWKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVE 237 + YGLP YGP+ P+ + LEGK++ +Y G RD+ Y++ Sbjct: 162 AHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYID 221 Query: 238 DHARALYIVV------------------TEGKAGETYNIGGHNEKKNIDVVLTICDLLDE 279 D A A+ + YNIG + + +D + + D L Sbjct: 222 DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG- 280 Query: 280 IVPKEKSYREQITYVADRPGHDRRYAIDAEKISRELGWKPQETFESGIRKTVGWYLSNTK 339 + +K+ +PG + D + + +G+ P+ T + G++ V WY K Sbjct: 281 -IEAKKNMLPL------QPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 47.1 bits (112), Expect = 3e-08 Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 29/172 (16%) Query: 1 MNILLFGKTGQVGWELQRALAPLGN-LIALDVHSTDY--------------------CGD 39 M L+ G G +G+ + + L G+ ++ +D + Y D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 40 FSNPEGVAETVRSIRPDIIVNAAAHTAVDKAESEPEF---AQLLNATSVEAIAKAANEVG 96 ++ EG+ + S + + + AV + P + L ++ + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK-IQ 119 Query: 97 AWVIHYSTDYVFPGTGEIPWQEADATA-PLNVYGETKLAGEKALQEHCAKHL 147 +++ S+ V+ ++P+ D+ P+++Y TK A E L H HL Sbjct: 120 H-LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE--LMAHTYSHL 168
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 28.7 bits (64), Expect = 0.006 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query: 38 RLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIITSMKGDYEDR 97 +++ NKL++ + +++ N++ + L ++ I + + I+ I E Sbjct: 385 SYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKK------ELI 438 Query: 98 VDDYIIKNAELSKERRDISKKLK 120 YI ++ SK + Sbjct: 439 ETGYIKFKKIYKSKKSKTSKPMH 461
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 32.2 bits (73), Expect = 0.005 Identities = 38/256 (14%), Positives = 94/256 (36%), Gaps = 18/256 (7%) Query: 82 VIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGG 141 ++G D+LG KR+L+ + + + + + SF ++ I+ ++ A Sbjct: 67 AVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSL----LIMARFIQGAGAAAFPA 122 Query: 142 EWGGAALLSVESAPKNKK-AFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI 200 + + K S V +G GVG + + I W Sbjct: 123 LVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI------------HWSY 170 Query: 201 PFLFSIVLVLGALWVRNGMEESAEFEQQQHNQAAAKKRIPVIEALLRHPGAFLKIIALRL 260 L ++ ++ ++ +++ + + + ++ +L + + + + Sbjct: 171 LLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSV 230 Query: 261 CELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYI 320 L +++ + + GL + + IG+L GG+ T+ F + + + Sbjct: 231 LSFL-IFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQL 289 Query: 321 TGALIGTLSAFPFFMA 336 + A IG++ FP M+ Sbjct: 290 STAEIGSVIIFPGTMS 305
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 26.3 bits (57), Expect = 0.024 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Query: 3 KGEMKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYK 40 K ++KKI +S+++ ++ GC+ H ++ I K AYK Sbjct: 2 KNQVKKILGMSVVAAMVIVGCS-HAPKSGISKSNKAYK 38
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 544 bits (1403), Expect = 0.0 Identities = 182/595 (30%), Positives = 286/595 (48%), Gaps = 14/595 (2%) Query: 2 YTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVTIEQNGFVVYQKEVP 61 YT DIFD + FRG +L D MLP+S++ F P + GIA+ A VTI+QNG+ +Y VP Sbjct: 267 YTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVP 326 Query: 62 PGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRSHIE 121 PGPF I D+ AG DL V++KEADGS + VPY++VP + + G ++Y AG Sbjct: 327 PGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSG 386 Query: 122 GASKQSD-FVQAGYQYGFNNLLTLYGGSMVANNYYAFTLGTGWNT-RIGAISVDATKSHS 179 A ++ F Q+ +G T+YGG+ +A+ Y AF G G N +GA+SVD T+++S Sbjct: 387 NAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANS 446 Query: 180 KQDNGDVFDGQSYQIAYNKFVSQTSTRFGLAAWRYSSRDYRTFNDHVWANNKDNYRRDEN 239 + DGQS + YNK ++++ T L +RYS+ Y F D ++ ++ Sbjct: 447 TLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQD 506 Query: 240 DVYDI----ADYYQNDFGRKNSFSANMSQSLPEGWGSVSLSTLWRDYWGRSGSSKDYQLS 295 V + DYY + ++ ++Q L ++ LS + YWG S + +Q Sbjct: 507 GVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGR-TSTLYLSGSHQTYWGTSNVDEQFQAG 565 Query: 296 YSNNLRRISYTLAASQAYDENHHE-EKRFNIFISIPFD--WGDDVSTPRRQIYMSNSMTF 352 + I++TL+ S + ++ + ++IPF D + R S SM+ Sbjct: 566 LNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSH 625 Query: 353 DDQGFASNNTGLSGTVGSRDQFNYGVNLSHQHQGN---ETTAGANLTWNAPVATVNGSYS 409 D G +N G+ GT+ + +Y V + G+ +T A L + N YS Sbjct: 626 DLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYS 685 Query: 410 QSSTYRQAGASVSGGIVAWSGGVNLANRLSETFAVMNAPGIKDAYVNGQKYRTTNRNGVV 469 S +Q VSGG++A + GV L L++T ++ APG KDA V Q T+ G Sbjct: 686 HSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYA 745 Query: 470 VYDGMTPYRENHLMLDVSQSDSEAELRGNRKIAAPYRGAVVLVNFDTDQRKPWFIKALRA 529 V T YREN + LD + +L P RGA+V F + + L Sbjct: 746 VLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKA-RVGIKLLMTLTH 804 Query: 530 DGQPLTFGYEVNDIHGHNIGVVGQGSQLFIRTNEVPPSVNVAINKQQGLSCTITF 584 + +PL FG V + G+V Q+++ + V V +++ C + Sbjct: 805 NNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANY 859
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 29.2 bits (65), Expect = 0.002 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 8/43 (18%) Query: 52 THQKIIDMAM--------NGVGCRATARIMGVSLNTILHHLKN 86 T Q I+D+A+ + A+ GV+ I H K+ Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKD 54
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.010 Identities = 9/18 (50%), Positives = 12/18 (66%) Query: 31 LVLLGPSGAGKSSLLRVL 48 +VL G G GKS+L+ L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 121 bits (306), Expect = 4e-32 Identities = 92/404 (22%), Positives = 167/404 (41%), Gaps = 17/404 (4%) Query: 19 VTIALSLATFMQMLDSTISNVAIPTISGFLGASTDEGTWVITSFGVANAIAIPVTGRLAQ 78 + I L + +F +L+ + NV++P I+ WV T+F + +I V G+L+ Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 79 RIGELRLFLLSVTFFSLSSLMCSLS-TNLDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPP 137 ++G RL L + S++ + + +LI R +QG A L ++ R P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 138 EKRTFALALWSMTVIIAPICGPILGGYICDNFSWGWIFLINVPMGIIVLTLCLTLLKGRE 197 E R A L V + GP +GG I W +L+ +PM I+ L L +E Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKE 192 Query: 198 TETSPVKMNLPGLTLLVLGVGGLQIMLDKGRDLDWFNSSTIIILTVVSVISLISLVIWES 257 ++ G+ L+ +G+ + ML F +S I +VSV+S + V Sbjct: 193 VRIKG-HFDIKGIILMSVGI--VFFML--------FTTSYSISFLIVSVLSFLIFVKHIR 241 Query: 258 TSENPILDLSLFKSRNFTIGIVSITCAYLFYSGAIILMPQLLQETMGYNAIWAGLAYAPI 317 +P +D L K+ F IG++ + +G + ++P ++++ + G Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP 301 Query: 318 GIMPLLIS-PLIGRYGNKIDMRLLVTFSFLMYAVCYYWRSVTFMPTIDFTGIILPQFFQG 376 G M ++I + G ++ ++ +V + S T F II+ G Sbjct: 302 GTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGG 361 Query: 377 FAVACFFLPLTTISFSGLPDNKFANASSMSNFFRTLSGSVGTSL 420 + ++TI S L + S+ NF LS G ++ Sbjct: 362 LSFTK--TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAI 403
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 79.1 bits (195), Expect = 3e-18 Identities = 64/414 (15%), Positives = 123/414 (29%), Gaps = 96/414 (23%) Query: 13 RRKYLSLLAIVLFIAFSGAYAYWSMELEDMISTDDAYVT-GNADPISAQVSGSVTVVNHK 71 RR L I+ F+ + + ++E + + + G + I + V + K Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLG-QVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113 Query: 72 DTNYVRQGDILVSLDKTDATIALNKA---------------------------------- 97 + VR+GD+L+ L A K Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173 Query: 98 ------------------KNNLANIVRQTNKLYLQDKQYSAEVASARIQ---YQQSLEDY 136 K + Q + L + AE + + Y+ Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233 Query: 137 NRRV----PLAKQGVISKE----------TLEHTKDTLISSKAALNAAIQAYKANKALVM 182 R+ L + I+K + S + + I + K LV Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 183 N-------TPLNR-QPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQ-VGETVSPG 233 L + + + + + I++PV+ + Q V G V+ Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353 Query: 234 QSLMAVVPARQ-MWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNA 292 ++LM +VP + V A + + + +GQ+ I + F G +G Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVE------AFPYTRYGYLVGK--- 404 Query: 293 FSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEH----PLRIGLSMTATIDTKD 342 + + +V V +S++ L PL G+++TA I T Sbjct: 405 VKNINLDAIEDQRLGLVFNVI--ISIEENCLSTGNKNIPLSSGMAVTAEIKTGM 456
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 29.3 bits (65), Expect = 0.015 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 21/120 (17%) Query: 127 GNPLSSQEVLEGGESLILSE-----VAEPPAQMIDSLTTLFKTIKPVKRAFICSIKENEE 181 G+ ++SQE+L +S++ + E + ++ +F+TI P+ + F +K E+ Sbjct: 217 GDTITSQELLAQAQSILNKNHPGYTIYERDSSIVTHDNDIFRTILPMDQEFTYRVKNREQ 276 Query: 182 A-QPNLLIGIEADGDIEEIIQAAGSVATDTLPGDEPIDICQVKKGEKGISHFITEHIAPF 240 A + N G+ + + ++I V +KKGEK F H+ F Sbjct: 277 AYRINKKSGLNEEINNTDLISEKYYV---------------LKKGEKPYDPFDRSHLKLF 321
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 114 bits (288), Expect = 5e-30 Identities = 81/371 (21%), Positives = 144/371 (38%), Gaps = 74/371 (19%) Query: 23 GIDLGTTNSLVATVRSGQAETLADHEGRHLLPSVVHYQQQGHS-------VGYDARTNAA 75 IDLGT N+L+ G + +E PSVV +Q VG+DA+ Sbjct: 14 SIDLGTANTLIYVKGQG----IVLNE-----PSVVAIRQDRAGSPKSVAAVGHDAK-QML 63 Query: 76 LDTANTISSVKRLMGRSLADIQQRYPHLPYQFQASENGLPMIETAAGLLNPVRVSADILK 135 T I++++ + +AD V+ +L+ Sbjct: 64 GRTPGNIAAIRPMKDGVIADF-------------------------------FVTEKMLQ 92 Query: 136 ALAARATEALAGE-LDGVVITVPAYFDDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYG 194 + V++ VP +R+ +++A+ AG + L+ EP AAAI G Sbjct: 93 HFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAG 152 Query: 195 LDSGQEGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGGDDFDHLLADYIREQAG 254 L + V D+GGGT +++++ L+ V +GGD FD + +Y+R G Sbjct: 153 LPVSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYG 207 Query: 255 --IPDRSDNRVQRELLDAAIAAKIALSDADSVTVNVAG---WQG-----EISREQFNELI 304 I + + R++ E+ A + + V G +G ++ + E + Sbjct: 208 SLIGEATAERIKHEI-------GSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEAL 260 Query: 305 APLVKRTLLACRRALKDAGVE-ADEVLE--VVMVGGSTRVPLVRERVGEFFGRPPLTSID 361 + + A AL+ E A ++ E +V+ GG + + + E G P + + D Sbjct: 261 QEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAED 320 Query: 362 PDKVVAIGAAI 372 P VA G Sbjct: 321 PLTCVARGGGK 331
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 27.7 bits (61), Expect = 0.021 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Query: 51 TLSAGDTLVVWKLDRLGRSMR-HLVVLVEELRERGINFRSLT 91 T D +VWK+DRLG+ + + V V+ L+E G F + T Sbjct: 153 TTPTADGKLVWKIDRLGQGEKSKITVWVKPLKE-GCCFTAAT 193
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 26.3 bits (58), Expect = 0.032 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 11/87 (12%) Query: 4 KTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRV--GMTQQQVAYALGT 61 K + AVL + AG LER ++ Q + + + VS+ + GMT ++ A Sbjct: 69 KVV-LCGAVLARVDAGDEQLERKIH---YRQQDLVDYSPVSEKHLADGMTVGELCAA--A 122 Query: 62 PLMSDPFGTNTWFYVFRQQPGHEGVTQ 88 MSD N + G G+T Sbjct: 123 ITMSDNSAANL---LLATVGGPAGLTA 146
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 28.1 bits (62), Expect = 0.002 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 3 KEFVDDNRVKVNNDGNFVNDLSGRRGIYQAGIKASFSSTLSGHLGVEYSHGAGVESPWNA 62 +EF V N + +L G R G+ A+ S + EYS G + PW Sbjct: 844 QEFDGAGTVHTNGIAH-RTELRGTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTF 902 Query: 63 VAGVNWSF 70 AG +S+ Sbjct: 903 HAGYRYSW 910
>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature. Length = 52 Score = 67.5 bits (165), Expect = 1e-19 Identities = 38/51 (74%), Positives = 43/51 (84%) Query: 1 MKLPGNALIWCVLIVCCTLLIFTLLTRNRLCEVRLKDGYREVTATMAYESG 51 MKLP ++L+WCVLIVC TLLIFT LTR LCE+R +DGYREV A MAYESG Sbjct: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESG 51
>cloacin#Cloacin signature. Length = 551 Score = 30.5 bits (68), Expect = 6e-04 Identities = 16/30 (53%), Positives = 18/30 (60%) Query: 57 GSSSSSSGGGSSGGGFSGGGGSSGGGGASG 86 GS S GG SG G GG G+SGGG +G Sbjct: 49 GSGSGIHWGGGSGHGNGGGNGNSGGGSGTG 78 Score = 28.1 bits (62), Expect = 0.004 Identities = 12/23 (52%), Positives = 14/23 (60%) Query: 63 SGGGSSGGGFSGGGGSSGGGGAS 85 SG G+ GG + GGGS GG S Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLS 82 Score = 27.0 bits (59), Expect = 0.011 Identities = 11/32 (34%), Positives = 14/32 (43%) Query: 54 SRKGSSSSSSGGGSSGGGFSGGGGSSGGGGAS 85 S S G G G SGGG +GG ++ Sbjct: 52 SGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 26.2 bits (57), Expect = 0.016 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 57 GSSSSSSGGGSSGGGFSGGGGSSGGGGASG 86 S ++ GGGS G GGG G GG +G Sbjct: 40 SSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Score = 25.8 bits (56), Expect = 0.027 Identities = 13/38 (34%), Positives = 16/38 (42%) Query: 49 SKERASRKGSSSSSSGGGSSGGGFSGGGGSSGGGGASG 86 S E G S S G G +GGG + GGG+ Sbjct: 40 SSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGT 77 Score = 25.4 bits (55), Expect = 0.030 Identities = 12/30 (40%), Positives = 13/30 (43%) Query: 54 SRKGSSSSSSGGGSSGGGFSGGGGSSGGGG 83 S G G +GGG GG SG GG Sbjct: 50 SGSGIHWGGGSGHGNGGGNGNSGGGSGTGG 79
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 109 bits (273), Expect = 2e-30 Identities = 65/281 (23%), Positives = 114/281 (40%), Gaps = 36/281 (12%) Query: 1 MFWLMLLIISAKVAHSLWRYFSFSAEYTVVSPSVNKPPRTDAKTFDKNDVQLISQQNWFG 60 +F+L++L+ ++A WR V S + P + + ND L FG Sbjct: 18 LFYLLMLLFCQQLAMIFWR-IGLPDNAPVSSVQIT-PAQARQQPVTLNDFTL------FG 69 Query: 61 KY-QPVAAPV-KQPEPAPVAETRLNVVLRGIAFG---ARPGAVIEEGGKQQVYLQGERPG 115 + A + + + + LN+ L G+ G +R A+I + +Q E Sbjct: 70 VSPEKNKAGALDASQMSNLPPSTLNLSLTGVMAGDDDSRSIAIISKDNEQFSRGVNEEVP 129 Query: 116 SHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTRQKAISDEAKQAVAEPAASAPV 175 +NA I I D V+L+YQG+ E L L +E S ++++ +Q Sbjct: 130 GYNAKIVSIRPDRVVLQYQGRYEVLGLYSQEDSGSDGVPGAQVNEQLQQ----------- 178 Query: 176 ELPAAVRQALAKDPQKIFNYIQLTPVHKEG-IVGYAVKPGADRALFDASGFKEGDIAIAL 234 + + +Y+ +P+ + + GY + PG F G ++ D+A+AL Sbjct: 179 -----------RASTTMSDYVSFSPIMNDNKLQGYRLNPGPKSDSFYRVGLQDNDMAVAL 227 Query: 235 NQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIAL 275 N D D M ++ + + LTV R G R DI + Sbjct: 228 NGLDLRDAEQAKKAMERMADVHNFTLTVERDGQRQDIYMEF 268
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 516 bits (1331), Expect = e-179 Identities = 268/619 (43%), Positives = 395/619 (63%), Gaps = 37/619 (5%) Query: 3 PGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVG 62 P V+G +++R+ LNE QYYQ FL++L+ G+AV+ M N VLKVV+S AK +P+ Sbjct: 58 PSVRGTITVRSYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVAS 117 Query: 63 EGSDNYAGDEMVTKVVPV-----RELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVV 117 + + GDE+VT+VVP+ R+LAP+LRQ+ D+AG G+VV+Y+PSNV+++TGRA+V+ Sbjct: 118 DAAPG-IGDEVVTRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVI 176 Query: 118 ERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQ-PATLKSQIVADER 176 +RL +++RVD+AG+R+ +PL ASA+++ +++ L K++ ++ P ++ + +VADER Sbjct: 177 KRLLTIVERVDNAGDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADER 236 Query: 177 TNSVIVSGDPATRNKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSGTLTAA 236 TN+V+VSG+P +R ++ +I++LD + GN++V YLKY+KA DLV+VL +S T+ + Sbjct: 237 TNAVLVSGEPNSRQRIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSE 296 Query: 237 KEEAEGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVEALIVE 296 K+ A+ + + + I A +NALIVTA D+M L+ VI QLDIRR QV VEA+I E Sbjct: 297 KQAAKPV-AALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAE 355 Query: 297 VAEGSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINP 356 V + +N G+QWA+K+AG+ QF N + +PI T A Sbjct: 356 VQDADGLNLGIQWANKNAGMTQFTN-SGLPISTAIAG-------------------ANQY 395 Query: 357 DTNGDLST-LAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFF 415 + +G +S+ LA LS F+G A G +G+W L+ A+ + + +++L+TPSI TLDN EA F Sbjct: 396 NKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATF 455 Query: 416 MVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQ 475 VGQ+VPVLTGS S N FNTVERK VGI LKV PQINEG++V + IEQEVS V Sbjct: 456 NVGQEVPVLTGSQTTSG-DNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADA 514 Query: 476 TS-----LDVVFGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFK 530 S L F R + VL GE +V+GGL+D ++ KVPLLGDIP+IG LF+ Sbjct: 515 ASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFR 574 Query: 531 STADKKEKRNLMVFIRPTILRDGMAADGVSQRKYNYMRAEQIYR--DEQGLSLMPHTAQP 588 ST+ K KRNLM+FIRPT++RD S +Y Q + E +++ Sbjct: 575 STSKKVSKRNLMLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKENNDAMLNQDLLE 634 Query: 589 VLPAQNQALPPEVRAFLNA 607 + P Q+ A +V A ++A Sbjct: 635 IYPRQDTAAFRQVSAAIDA 653
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 433 bits (1116), Expect = e-153 Identities = 218/400 (54%), Positives = 294/400 (73%), Gaps = 1/400 (0%) Query: 1 MALFYYQALERNGRKTKGMIEADSERHARQLLRGKELIPVHI-EARMNASSGGMLQRRRH 59 MA ++YQAL+ G+K +G EADS R ARQLLR + L+P+ + E R + G Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 60 AHRRVAAADLALFTCQLATLVQAAIPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTL 119 R++ +DLAL T QLATLV A++PLE L AV++QSEK H+ L A+RS++ EG++L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 120 SDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLL 179 +D+++ P F+ L+C+MVAAGE SGHLD VLNRLADYTEQRQ+++SR+ QAM+YP VL Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 180 VVATSVVTILLAAVVPKIIEQFDHLGHALPATTRALIAMSDALQASGVYWLAGLLALLVL 239 VVA +VV+ILL+ VVPK++EQF H+ ALP +TR L+ MSDA++ G + L LLA + Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 240 GQRLLKNPAMLLRWDKTLLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAV 299 + +L+ + + + LL LP+ GR+ARGLNTAR++RTLSIL AS+VPLL+ ++ + V Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 300 SANRYVEQQLLLAADRVREGSSLRAALAELRLFPPMMLYMIASGEQSGELETMLEQAAVN 359 +N Y +L LA D VREG SL AL + LFPPMM +MIASGE+SGEL++MLE+AA N Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 360 QEREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPML 399 Q+REF +Q+ LALGLFEP LVV MA VVLFIV+AIL+P+L Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPIL 400
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 218 bits (556), Expect = 2e-76 Identities = 90/146 (61%), Positives = 109/146 (74%), Gaps = 3/146 (2%) Query: 6 RTQKPRTGFTLLEVMVVIVILGVLASLVVPNLLGNKEKADRQKAISDIVALENALDMYRL 65 R + GFTLLE+MVVIVI+GVLASLVVPNL+GNKEKAD+QKA+SDIVALENALDMY+L Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61 Query: 66 DNGRYPTTEQGLEALIQQPANMADSRNYRTGGYIKRLPKDPWGNDYQYLSPGEKGLFDVY 125 DN YPTT QGLE+L++ P + NY GYIKRLP DPWGNDY ++PGE G +D+ Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLL 121 Query: 126 TLGADGQENGEGAGADIGNWNLQEFQ 151 + G DG+ E DI NW L + + Sbjct: 122 SAGPDGEMGTED---DITNWGLSKKK 144
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 58.0 bits (140), Expect = 3e-13 Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 41/185 (22%) Query: 1 MLVIFLIGLASAGVVQTFATASESPAKKAAQDFLTRFAQFKDWAVIDGQTLGVLIDPPGY 60 ML++ L+G+++ V+ F + + A + F + + + GQ GV + P + Sbjct: 12 MLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFFGVSVHPDRW 71 Query: 61 QFMQRRHGQWLPVSATRLSAQVTVPKQVQMLLQPGSDIWQKEYALELQRRRL----TLHD 116 QF+ + P D W L L+ R+ ++ Sbjct: 72 QFLVLEARDGADPA-------------------PADDGWSGYRWLPLRAGRVATSGSIAG 112 Query: 117 IELEL-----QKEAKKKTPQIRFSPFEPATPFTLRFYSAAQNACWAVKLAHDGALSLSQC 171 +L L + P + P TPF L L ++ + Sbjct: 113 GKLNLAFAQGEAWTPGDNPDVLIFPGGEMTPFRLT-------------LGEAPGIAFNAR 159 Query: 172 DERMP 176 E +P Sbjct: 160 GESLP 164
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 33.0 bits (75), Expect = 1e-04 Identities = 13/24 (54%), Positives = 18/24 (75%) Query: 2 KRGFTLLEVMLALAIFALAATTVL 25 +RGFTLLE+ML L + ++A VL Sbjct: 3 QRGFTLLEMMLILLLMGVSAGMVL 26
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.017 Identities = 36/239 (15%), Positives = 76/239 (31%), Gaps = 18/239 (7%) Query: 174 SHMQLYIGAALSAILVLFTLTLPHIPVAKQQANQSWTTLLGLDAFALFKNKRMAIFFIFS 233 H + AAL+ + L L + + L+ A F+ R Sbjct: 159 PHAPFFAAAALNGLNFLTGCFLLPES---HKGERRPLRREALNPLASFRWARGMTVVAAL 215 Query: 234 MLLGAELQITNMFGNTFLHSFDKDPMFASSFIVQHASIIMSISQISETLF-ILTIPFFLS 292 M + +Q+ F +D + + I ++ I +L + + Sbjct: 216 MAVFFIMQLVGQVPAALWVIFGEDRFHWDATTI---GISLAAFGILHSLAQAMITGPVAA 272 Query: 293 RYGIKNVMMISIVAWILRFALFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVEKE 352 R G + +M+ ++A + L A+ + ++V + + + ++ Sbjct: 273 RLGERRALMLGMIADGTGYILLAF-----ATRGWMAFPIMVLLASGGIGMPALQAMLSRQ 327 Query: 353 VSPAIRASAQGMFLMMTNGFGCILGGIVSGKVVEMYTQNGITDWQ-TVWLIFAGYSVVL 410 V + QG +T+ L IV + IT W W+ A ++ Sbjct: 328 VDEERQGQLQGSLAALTS-----LTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLC 381
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 536 bits (1382), Expect = 0.0 Identities = 173/397 (43%), Positives = 254/397 (63%), Gaps = 11/397 (2%) Query: 11 VLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVN-GGEPAP--LAHHSYEGA 67 +LVINCGSSS+K+ ++++ D VL G+A+ I ++ L+ N GE ++ A Sbjct: 3 ILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDHKDA 62 Query: 68 LKAIAFELEKRNLN-----DSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLH 122 +K + L + + +GHR+ HGG FT S +ITD+V+ I LAPLH Sbjct: 63 IKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAPLH 122 Query: 123 NYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTS 182 N AN+ GI++ Q+ P V VAVFDT+FHQTM AYLY +P++YY + +R+YGFHGTS Sbjct: 123 NPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGTS 182 Query: 183 HRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSG 242 H+YVSQRA +LN + ++ HLGNG+SI AV+NG+S+DTSMG TPLEGL MGTRSG Sbjct: 183 HKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTRSG 242 Query: 243 DVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLR-VLEKAWHEGHERAQLAI 301 +D +S++ + N S ++ ++NK+SG+ GISG+SSD R + + A+ G +RAQLA+ Sbjct: 243 SIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQLAL 302 Query: 302 KTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVIEHLAVLGVEIDTEMNNRS 361 F +R+ + I +AA++ +D I+FT GIGEN IR +++ L LG ++D E N Sbjct: 303 NVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKNKVR 362 Query: 362 NSFGERIVSSENARVICAVIPTNEEKMIALDAIHLGK 398 E I+S+ +++V V+PTNEE MIA D + + Sbjct: 363 GE--EAIISTADSKVNVMVVPTNEEYMIAKDTEKIVE 397
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.4 bits (118), Expect = 1e-08 Identities = 41/218 (18%), Positives = 70/218 (32%), Gaps = 33/218 (15%) Query: 96 LQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSR-QDYDT-ARTQLNEAEANVT 153 + + A L S + K Y Q + +L + N+ Sbjct: 257 QENKYVEAVNELRVYKSQLEQIE----SEILSAKEEYQLVTQLFKNEILDKLRQTTDNIG 312 Query: 154 VAKAAVEQATINLQYANVTSPITGASGKSSV-TVGALVTANQADSLVTVQRLDPIYVDLT 212 + + + Q + + +P++ + V T G +VT + +V V D + V Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET-LMVIVPEDDTLEVTAL 371 Query: 213 QSVQDFLRMKEEVASGQIKQVQGSTPVQLNLE--NGKRY-SQTGTLK--FSDPTVDETTG 267 +D I + + +E RY G +K D D+ G Sbjct: 372 VQNKD------------IGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLG 419 Query: 268 SVT--LRAI------FPNPNGDLLPGMYVTALVDEGSR 297 V + +I N N L GM VTA + G R Sbjct: 420 LVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMR 457 Score = 32.1 bits (73), Expect = 0.003 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 7/118 (5%) Query: 52 PGRTVPY-EVAEIRPQVGGIIIKRNFI-EGDKVNQGDSLYQIDPAPLQAELNSAKGSLAK 109 G+ EI+P I+ K + EG+ V +GD L ++ +A+ + SL + Sbjct: 87 NGKLTHSGRSKEIKPIENSIV-KEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQ 145 Query: 110 ALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQ 167 A + +I +R L K + D + N +E V + +++ Q Sbjct: 146 ARLEQTRYQIL-SRSIELNKLPELKLPDEPYFQ---NVSEEEVLRLTSLIKEQFSTWQ 199
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.030 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%) Query: 28 EIVAIL-GPNGAGKSTLLRQLTG 49 + +L G G GKSTL+ L G Sbjct: 596 DYSVVLEGTGGIGKSTLINTLVG 618
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 31.8 bits (72), Expect = 0.003 Identities = 40/210 (19%), Positives = 72/210 (34%), Gaps = 25/210 (11%) Query: 55 VKRKKLFTAVLALSWAF--------SVTAAERIVVAGGSLTELIYAMGAGERVVGVDETT 106 + R++L TA +ALS + RIV EL+ A+G GV +T Sbjct: 7 ISRRRLLTA-MALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVP--YGVADTI 63 Query: 107 SY------PPETAKLPHIGYWKQLSSEGILSLRPDSVITWQDAGPQIVLDQL-RAQKVNV 159 +Y PP + +G + + E + ++P ++ GP + L R Sbjct: 64 NYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGP--SPEMLARIAPGRG 121 Query: 160 VTLPRVPATLEQMYANIRQLAKTLQVPEQGDALVTQINQRLERVQQNVAAKKAPVKAMFI 219 L ++ ++A L + + + Q + ++ + A + Sbjct: 122 FNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTT 181 Query: 220 LSAGGSAPQ--VAGKGSVADAILSLAGAEN 247 L V G S+ IL G N Sbjct: 182 LI---DPRHMLVFGPNSLFQEILDEYGIPN 208
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.020 Identities = 10/34 (29%), Positives = 19/34 (55%) Query: 25 QAVLNNVSLTLKSGETVALLGRSGCGKSTLARLL 58 Q + ++ +++ T+ + G SG GK +AR L Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 180 bits (458), Expect = 4e-51 Identities = 97/445 (21%), Positives = 170/445 (38%), Gaps = 81/445 (18%) Query: 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQE--RVMDSNDLEKERGITILAKNT 61 K+ NI ++AHVD GKTTL + LL SG + D+ LE++RGITI T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 62 AIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGL 121 + +W + ++NI+DTPGH DF EV R +S++D +L++ A DG QTR + G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 122 KPIVVINKVDRPGARPDWVVDQVFD-------------LFVNLDATDEQLD--------- 159 I INK+D+ G V + + L+ N+ T+ Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 160 --------------------------------FPIVYASALNGIAGLDHEDMAEDMTPLY 187 FP+ + SA N I G+D+ L Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNI-GIDN---------LI 231 Query: 188 QAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTR 247 + I + + ++ +++Y+ + R+ G + V I + E Sbjct: 232 EVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-- 289 Query: 248 NAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTV 307 K+ ++ + E + D A +G+IV + L ++ + DT+ + + P + Sbjct: 290 --KITEMYTSINGELCKIDKAYSGEIVILQNEF-LKLNSVLGDTKLLPQRERIENPLPLL 346 Query: 308 SMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLS 367 + + D L LR +S G++ + Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPL---------LRYYVDSATHEIILSFLGKVQME 397 Query: 368 VLIENMRRE-GFELAVSRPKVIFRE 391 V ++ + E+ + P VI+ E Sbjct: 398 VTCALLQEKYHVEIEIKEPTVIYME 422 Score = 32.5 bits (74), Expect = 0.005 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 398 EPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMT 457 EPY + + +++ + ++ + V L IP+R + +RS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKN-NEVILSGEIPARCIQEYRSDLTF 595 Query: 458 MTSGTGLLYSTFSHY 472 T+G + + Y Sbjct: 596 FTNGRSVCLTELKGY 610
>PF06580#Sensor histidine kinase Length = 349 Score = 28.3 bits (63), Expect = 0.041 Identities = 34/190 (17%), Positives = 72/190 (37%), Gaps = 41/190 (21%) Query: 171 IIEQADRLRNLVDRL---LGPQLPGTRVTE-SIHKVAERV---VTLVSMELPDNVRLIRD 223 I+E + R ++ L + L + + S+ V + L S++ D ++ Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQ 245 Query: 224 YDPSLPELAHDPDQIEQVLLN-IVRNALQ---ALGPEGGEIILRTRTAFQLTLHGERYRL 279 +P++ ++ Q+ +L+ +V N ++ A P+GG+I+L+ Sbjct: 246 INPAIMDV-----QVPPMLVQTLVENGIKHGIAQLPQGGKILLKGT------KDNGTVT- 293 Query: 280 AARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGK---IEFTSWP 336 ++VE+ G + ++ TG GL R + G I+ + Sbjct: 294 ---LEVENTGSLALKNTKE------------STGTGLQNVRERLQMLYGTEAQIKLSEKQ 338 Query: 337 GHTEFSVYLP 346 G V +P Sbjct: 339 GKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 602 bits (1553), Expect = 0.0 Identities = 206/478 (43%), Positives = 300/478 (62%), Gaps = 11/478 (2%) Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 M + V DDD++IR VL +AL+ AG N A + +A+ D++++D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 + LL +IK+ P LPV++M+A + A+ A ++GA+DYLPKPFD+ E + ++ RA++ Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 + + ++G + AMQ+++R++ RL ++ ++++I GESGTGKELVA A Sbjct: 121 EPKRRPSKLEDDSQDGM-PLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 LH + R PF+A+NMAAIP+DLIESELFGHEKGAFTGA T GRFEQA+GGTLFLDE Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239 Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 IGDMP+D QTRLLRVL G++ VGG P++ DVRI+AAT+++L+Q + +G FREDL++R Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299 Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 LNV+ + LPPLR+R EDIP L RHF+Q A +E G++ K E + WPGNVR+L Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVREL 358 Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS---- 416 EN R LT + + + + EL + S + ++Q + +R Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 417 -----GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 L E+E L+ AL T+G++ +AA LLG RNTL +K++ELG+ Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>SECA#SecA protein signature. Length = 901 Score = 27.5 bits (61), Expect = 0.030 Identities = 11/71 (15%), Positives = 28/71 (39%) Query: 13 AKARRKTREELNQEARDRKRQKKRRGHAPGSRAAGGNTTSGCKGQNAPKDPRIGSKTPIP 72 +K + + EE+ + + R+ + +R ++ + + ++G P P Sbjct: 827 SKVQVRMPEEVEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCP 886 Query: 73 LGVTEKVTKQH 83 G +K + H Sbjct: 887 CGSGKKYKQCH 897
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.3 bits (60), Expect = 0.028 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 18/101 (17%) Query: 31 AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQ--ANKRRSQILD 88 +EK +++ + A K+ + T + A++ ++ Q K + + Sbjct: 1049 KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEK 1108 Query: 89 EAKAEAEQERTKIVA----------------QAQAEIEAER 113 E KA+ E E+T+ V Q QAE E Sbjct: 1109 EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.2 bits (65), Expect = 0.047 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 10/80 (12%) Query: 367 LGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTT 426 LGD + D V + AG+ N G DV T G AT A T Sbjct: 616 LGDGD--DKVFLSAGSA--NIYAGK------GHDVVYYDKTDTGYLTIDGTKATEAGNYT 665 Query: 427 VTRNVGENALAISRVPQTQK 446 VTR +G + + V + Q+ Sbjct: 666 VTRVLGGDVKVLQEVVKEQE 685
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 63.8 bits (154), Expect = 3e-13 Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 3/166 (1%) Query: 158 NYASALGVESEADGEKSLALGFKSKSGGIYSIALGAAANASATDAFAVGRESAASGTDSL 217 N ALG+E A G + + GI+SIA+GA A A+ A AVG S A+G +S+ Sbjct: 42 NADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSV 101 Query: 218 ALGRKSVASAANSIAIGAETEAAENATAVGNNAKAKGTNSMAMGLGSLADKVNTIALGNG 277 A+G S A +++ GA + A ++ A+G A T +A+G S AD N++A+G+ Sbjct: 102 AIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDT-GVAVGFNSKADAKNSVAIGHS 160 Query: 278 SQALADN--AIAIGQGNKADGVDAIALGNGSQSRGLNTIALGTASN 321 S A++ +IAIG +K D +++++G+ S +R L +A GT Sbjct: 161 SHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDT 206 Score = 41.8 bits (97), Expect = 4e-06 Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 24/207 (11%) Query: 34 KLLISALVAGGMFSS-FAYADNADGTPVVPAGHNSGNGWVAIGEGSTASQHTGPDGASTA 92 K+ +SA + +FSS +A+AD+ DG P + A S N A+G G Sbjct: 6 KISVSAALISALFSSPYAFADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAG---- 61 Query: 93 IGNLASALGKYSTSIGARSSAGGDASTALGVKASASGDRGIALGASSISEGNYSMALGVV 152 G +SA G S A+G A A+ +A+GA SI+ G S+A+G + Sbjct: 62 ---------------GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPL 106 Query: 153 AVAHGNYASALGVESEADGEKSLALGFKSKSGGIYSIALGAAANASATDAFAVGRES--A 210 + A G+ A G S A + +A+G ++ + +A+G + A A ++ A+G S A Sbjct: 107 SKALGDSAVTYGAASTAQ-KDGVAIGARASTSDT-GVAVGFNSKADAKNSVAIGHSSHVA 164 Query: 211 ASGTDSLALGRKSVASAANSIAIGAET 237 A+ S+A+G +S NS++IG E+ Sbjct: 165 ANHGYSIAIGDRSKTDRENSVSIGHES 191
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 61.8 bits (149), Expect = 5e-12 Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 31/182 (17%) Query: 5 DARATGTIATAVGYNAYASGEQSLAVGPNSIADDDFSTAIGAQAKAFGHHSLALGAGSNT 64 +A A G + A+G A A+ ++AVG SIA S AIG +KA G ++ GA S T Sbjct: 64 NASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS-T 122 Query: 65 ASDASIALGANSFATGAQSMSLGVASKTSAEAAIALGYNSFANGLNSMSLGQSSYAGKDN 124 A +A+GA + ++++ +A+G+NS A+ NS+++G SS+ ++ Sbjct: 123 AQKDGVAIGARA---------------STSDTGVAVGFNSKADAKNSVAIGHSSHVAANH 167 Query: 125 SVALGSDASADGLNSVALGAGSIAEYDNTVSVGSSTLQRKVVNMAAGIVSQTSTDAINGS 184 S+A+G S + +N+VS+G +L R++ ++AAG TDA+N + Sbjct: 168 GY------------SIAIGDRSKTDRENSVSIGHESLNRQLTHLAAG---TKDTDAVNVA 212 Query: 185 QL 186 QL Sbjct: 213 QL 214 Score = 38.0 bits (87), Expect = 1e-04 Identities = 27/80 (33%), Positives = 49/80 (61%) Query: 85 SLGVASKTSAEAAIALGYNSFANGLNSMSLGQSSYAGKDNSVALGSDASADGLNSVALGA 144 +LG+ A G N+ A G++S+++G ++ A K +VA+G+ + A G+NSVA+G Sbjct: 46 ALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGP 105 Query: 145 GSIAEYDNTVSVGSSTLQRK 164 S A D+ V+ G+++ +K Sbjct: 106 LSKALGDSAVTYGAASTAQK 125 Score = 34.5 bits (78), Expect = 0.002 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 25/149 (16%) Query: 621 NGLAFNDASASGVGATAVGYNAVASGASSVAIGQNSSSTVDTGIALGSSSVSSRVIAKGS 680 +G+A +++ AVG+N+ A +SVAIG +S + G + IA G Sbjct: 126 DGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYS----------IAIGD 175 Query: 681 RDTSVTENGVAIGYGTTDGELLGALSIGDDGKYRQIINVADGSEAHDAVTVRQLQNAIGA 740 R + EN V+IG+ + + RQ+ ++A G++ DAV V QL+ I Sbjct: 176 RSKTDRENSVSIGHESLN---------------RQLTHLAAGTKDTDAVNVAQLKKEIEK 220 Query: 741 VATTPTKYYHANSTAENSLAVGEDSLAMG 769 K N+ A + S +G Sbjct: 221 TQENTNKRSAELLANANAYADNKSSSVLG 249 Score = 33.7 bits (76), Expect = 0.003 Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 3/156 (1%) Query: 129 GSDASADGLNSVALGAGSIAEYDNTVSVGSSTLQRKVVNMAAGIVSQTSTDAINGSQLYS 188 G +ASA G++S+A+GA + A V+VG+ ++ V ++A G +S+ D+ S Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 189 LSSNIANYFGGDASVSDDGVFTCPTYNINGTDYTNVGDALAAIDTSFEDALLWDENANGG 248 + G AS SD GV + + +G + + D + Sbjct: 122 TAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDR 181 Query: 249 TGAFSASHGKNDSKITNVLAGAVTETSTDAINSGQL 284 + S H + ++T++ AG TDA+N QL Sbjct: 182 ENSVSIGHESLNRQLTHLAAGT---KDTDAVNVAQL 214 Score = 31.0 bits (69), Expect = 0.020 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 15/96 (15%) Query: 727 DAVTVRQLQNAIGAVATTPTKYYHANSTAENSLAVGEDSLAMGAKTVVNGNAGIGIGLNT 786 ++V + L A+G A T Y A STA+ +D +A+GA+ + + G+ +G N+ Sbjct: 99 NSVAIGPLSKALGDSAVT----YGAASTAQ------KDGVAIGARASTS-DTGVAVGFNS 147 Query: 787 LVLADAINGIAIG--SNARANHANSIAMGNGSQTTR 820 DA N +AIG S+ ANH SIA+G+ S+T R Sbjct: 148 KA--DAKNSVAIGHSSHVAANHGYSIAIGDRSKTDR 181
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 101 bits (253), Expect = 8e-27 Identities = 76/348 (21%), Positives = 127/348 (36%), Gaps = 67/348 (19%) Query: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD--------------GTKFVNLVDLNI 47 +VTG AGFIG ++ K L + G ++ +DNL D +++ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 48 ADYMDKEDFLIQIMAGEDFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSK-------EL 100 AD + + + A F E +F + +Y ++N + Y+ + Sbjct: 62 ADR----EGMTDLFASGHF---ERVFISPHRLAV-----RYSLENPHAYADSNLTGFLNI 109 Query: 101 LHYCLEREIP-FLYASSAATYGGRTSD-FIESREYEKPLNVYGYSKFLFDEYVRQILPEA 158 L C +I LYASS++ YG F + P+++Y +K + Sbjct: 110 LEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY 169 Query: 159 NSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA 218 G R+F VYGP + MA F + G+S ++ KRDF Y+ D+A Sbjct: 170 GLPATGLRFFTVYGPWG--RPDMA--LFKFTKAMLEGKSIDVY-NYGKMKRDFTYIDDIA 224 Query: 219 DVNL------------WFLENGVSG-------IFNLGTGRAESFQAVADATLAY-HKKGQ 258 + + W +E G ++N+G A + + Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284 Query: 259 IEYIPFPDKLKGRYQAFTQADLTNLRAA-GYDKPFKTVAEGVTEYMAW 305 +P G T AD L G+ P TV +GV ++ W Sbjct: 285 KNMLPLQ---PGDVL-ETSADTKALYEVIGF-TPETTVKDGVKNFVNW 327
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.020 Identities = 12/22 (54%), Positives = 13/22 (59%) Query: 32 MVALLGPSGSGKSTLLRHLSGL 53 V L G G GKSTL+ L GL Sbjct: 598 SVVLEGTGGIGKSTLINTLVGL 619
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.014 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 8/70 (11%) Query: 36 CVVLHGHSGSGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAPARKVVEI------RK 89 VVL G G GKSTL+ +L + I G + + + E+ R+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIV--AYELSEMTAFRR 655 Query: 90 TTVGWVSQFL 99 V F Sbjct: 656 ADAEAVKAFF 665
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.6 bits (74), Expect = 3e-04 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 5/84 (5%) Query: 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAG 109 L L+ +G I + + N I+++ V R VG+ LL A E A++ Sbjct: 68 FLYYLENNCIGRIKIRSNW-----NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENH 122 Query: 110 AEMTELSTNVKRHDAHRFYLREGY 133 L T A FY + + Sbjct: 123 FCGLMLETQDINISACHFYAKHHF 146
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 25.9 bits (57), Expect = 0.032 Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 8/107 (7%) Query: 11 TLLTLTTVPAQADIIDDTIGNIQ--------QAINDAYNPDHGRDYEDSRDDGWQREVSD 62 LL LT + A+AD + +Q Q ++ + + + + + +Q + Sbjct: 123 VLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEE 182 Query: 63 DRRRQYDDRRRQFEDRRRQLDDRQHQLDQERRQLEDEERRMEDEYGQ 109 + R + QF + Q ++ LD++R + R+ Sbjct: 183 EVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 58.3 bits (141), Expect = 6e-11 Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 640 VLVLEDEAAVRQTICEQLHLLGYLTLEASSGEQALDLLAASAEIDIFISDLMLPGGMSGA 699 +LV +D+AA+R + + L GY S+ +AA + D+ ++D+++P + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMP-DENAF 63 Query: 700 EVVNAARKLYPHLTLLLISGQ 720 +++ +K P L +L++S Q Sbjct: 64 DLLPRIKKARPDLPVLVMSAQ 84
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 58.3 bits (141), Expect = 5e-11 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 18/147 (12%) Query: 3 IATAGHVDHGKTTLLQAI---TGV------------NADRLPEEKKRGMTIDLGYAYWPQ 47 I HVD GKTTL +++ +G D E++RG+TI G + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 48 PDGRVPGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPML 107 + +V ID PGH FL+ + + +D A+L+++ DGV AQTR L+ G P + Sbjct: 66 ENTKV-NIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI 124 Query: 108 TVALTKADRVDEARVDEVERQVKEVLR 134 + K D+ + V + +KE L Sbjct: 125 -FFINKIDQNG-IDLSTVYQDIKEKLS 149
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.4 bits (68), Expect = 0.006 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 20 AAGTVKVFSNGSSEAKTLTGAEHLIDLVGQPRLANSWWPGAVISEELATAAALRQQQALL 79 A + + + LT + L D+V + N+ + A AA++ + L Sbjct: 73 AKAAAEAQAKAKANRDALT--QRLKDIVNEALRHNASRTPSATELAHANNAAMQAEDERL 130 Query: 80 TRLAEQGADSSADDAAAINALRQQIQVLKVTGRQK 114 RLA+ + + AA A ++ Q K R+K Sbjct: 131 -RLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREK 164
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 32.9 bits (75), Expect = 0.004 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 9/89 (10%) Query: 546 GSFGTVQYSQIGKAVQSGNVEPEKARTWELGTRYDDGALTAEMGLFLINFNNQYDSNQTN 605 G F + NV EK + L + YD+ AL A + Q D+ Sbjct: 187 GFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDNDALYASV------AVQQQDAKLVE 240 Query: 606 DTVTARGKTRHTGLETQARYDLGTLTPTL 634 + T + Y G +TP + Sbjct: 241 E---NYSHNSQTEVAATLAYRFGNVTPRV 266
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.7 bits (69), Expect = 0.001 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 5/54 (9%) Query: 78 IDPDVCGCGVGRMLVEHALSMAPE-----LTTNVNEQNEQAVGFYKKVGFKVTG 126 + D GVG L+ A+ A E L + N A FY K F + Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 31.3 bits (71), Expect = 7e-04 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 9/62 (14%) Query: 37 IANFFVAEKVLQDLVLQLHPRSTWHSFLPAKRMDIVVSALEMNEGGLSQVEERILHEVVA 96 IA+FFV EK+LQ + Q+H S P+ R+ + V G +QVE R + E Sbjct: 81 IADFFVTEKMLQHFIKQVHSNSF---MRPSPRVLVCVPV------GATQVERRAIRESAQ 131 Query: 97 GA 98 GA Sbjct: 132 GA 133
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.5 bits (61), Expect = 0.006 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 6/40 (15%) Query: 50 GIKELLTEM-AFNGAGV-----RDTARTLKIGINTVIRTL 83 IK L E+ F G+ DT +++ I+ V++TL Sbjct: 305 AIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTL 344
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.028 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 165 VVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAV-GKIVEVLGDNM 218 +VP+D L L+ I +G ++++ P R + GK+ + D + Sbjct: 359 IVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAI 413
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.1 bits (117), Expect = 3e-09 Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 31/148 (20%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 ++ DD + L + ++ + + + + D+V+ DV +P N + Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRIT-SNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 L ++K + ++++SA+N + AI+A++ G + Sbjct: 66 LPRIKKARPDLPVLVMSAQNT------------------------FMTAIKASEKGAYDY 101 Query: 124 ---PFSLNRFVGSLTSDQQKLDSLSKQE 148 PF L + + L ++ Sbjct: 102 LPKPFDLTE---LIGIIGRALAEPKRRP 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 2e-17 Identities = 30/105 (28%), Positives = 51/105 (48%) Query: 960 SILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFE 1019 +IL+ADD R +L + L+ GYDV ++ ++ DL++TDV MP+ + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1020 LTRKLREQNSSLPIWGLTANAQANEREKGLNCGMNLCLFKPLTLD 1064 L ++++ LP+ ++A K G L KP L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 27.5 bits (61), Expect = 0.018 Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 20/138 (14%) Query: 1 MQTQIKVRGYHLDVYQHVNNARYL-------EFLEEARWDGLENSDSFHWMTAH------ 47 +Q I + Y N Y E++ + N FH + Sbjct: 361 LQHFIPETNLFVSPYYKGNQKLYTSLKLIVEEWMAKLPGKRYLNHKHFHLFCHYVEQILR 420 Query: 48 ------NIAFVVVN-ININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVA 100 + FV N IN + + + + Q+ L+P+ + Sbjct: 421 NIQPPLVVVFVASNFINAHLLTDSFPRYFSDKSIDFHSYYLLQDNVYQIPDLKPDLVITH 480 Query: 101 DALITFVCIDLKTQKALA 118 LI FV +L A+A Sbjct: 481 SQLIPFVHHELTKGIAVA 498
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 117 bits (294), Expect = 3e-38 Identities = 49/88 (55%), Positives = 67/88 (76%) Query: 2 NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61 NK LI K+A +++K + A+DA+ ++V+ L +G+ V L+GFG F V+ERAAR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89 NPQTG+EI I A+KVP+F+AGKALKDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 34.7 bits (79), Expect = 0.002 Identities = 34/133 (25%), Positives = 68/133 (51%), Gaps = 15/133 (11%) Query: 191 ERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPD- 249 LE A +E + +L R +++ ++ S+ +Q++A ++L E + + Sbjct: 291 AALEAEKADLEHQSQVLNAN---RQSLRRDLDASREAK---KQLEAEHQKLEEQNKISEA 344 Query: 250 ENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMS-AEATVVRGYIDWMVQVPWNARSK 308 ++L+R +DA++ EAK++ EAE QKL+ + +S A +R +D + A+ + Sbjct: 345 SRQSLRRDLDASR---EAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASRE----AKKQ 397 Query: 309 VKKDLRQAQEILD 321 V+K L +A L Sbjct: 398 VEKALEEANSKLA 410
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.043 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 13/73 (17%) Query: 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119 E P+ E + ++G+ A + +Y RL D +++ G Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQ----EIYRVLARLMQTD---------LTLMITG 167 Query: 120 PTGSGKTLLAETL 132 +G+GK L+A L Sbjct: 168 ESGTGKELVARAL 180
>PF06291#Lambda prophage Bor protein Length = 102 Score = 26.9 bits (59), Expect = 0.024 Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 3 KKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQ 36 KK+LF ++ GCA+ T+ PT P++ Sbjct: 7 KKMLFSAALAMLITGCAQQTFTVGNKPTAVTPKE 40
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.0 bits (91), Expect = 3e-05 Identities = 71/347 (20%), Positives = 135/347 (38%), Gaps = 20/347 (5%) Query: 62 KFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLEPGTQLRWMAALAVVIAFCS 121 +F +P++ + F RR LL + V A M W+ + ++A + Sbjct: 56 QFACAPVLGALSDRF--GRRPVLLVSLAGAAVDYAIMAT----APFLWVLYIGRIVAGIT 109 Query: 122 ASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSGGLALWLADKWLGWQGMYWLMA 181 + V A+ D+ +ER + GM+ L + ++ A Sbjct: 110 GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG--FSPHAPFFAAA 167 Query: 182 AL-LIPCIIATLLAPEP--TDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGD 238 AL + + L PE + P+ + + + A L+ + ++ +G Sbjct: 168 ALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQ 227 Query: 239 AFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGALYGGILMQRLSLFRALLIFGIL 298 A +L F +DA +G+ G+L ++ A+ G + RL RAL+ G++ Sbjct: 228 VPA-ALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM-LGMI 285 Query: 299 QGASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGTSAFVALLMTLCNKSFSATQFALLS 358 A GY LL+ + + V GG+G A A+L ++ L+ Sbjct: 286 --ADGTGYILLAFATRGWMAFPIMVLL--ASGGIGMPALQAMLSRQVDEERQGQLQGSLA 341 Query: 359 ALSAVGRVYVGPVAGWFVEAHGWSTF--YLFSVAAAVPGLILLLVCR 403 AL+++ + VGP+ + A +T+ + + AA+ L L + R Sbjct: 342 ALTSLTSI-VGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRR 387
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 82.6 bits (204), Expect = 3e-19 Identities = 77/362 (21%), Positives = 139/362 (38%), Gaps = 29/362 (8%) Query: 18 GLGTVFSLRMLGMFMVLPVLTTY--GMALQGASEALIGIAIGIYGLTQAVFQIPFGLLSD 75 L TV L +G+ +++PVL + A GI + +Y L Q G LSD Sbjct: 10 ILSTVA-LDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSD 68 Query: 76 RIGRKPLIVGGLAVFAAGSVIAALSDSIWGIILGRALQG-SGAIAAAVMALLSDLTREQN 134 R GR+P+++ LA A I A + +W + +GR + G +GA A A ++D+T Sbjct: 69 RFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDE 128 Query: 135 RTKAMAFIGVSFGITFAIAMVLGPIITHKLG---LHALFWMIAILATTGIALTIWVVPNS 191 R + F+ FG MV GP++ +G HA F+ A L +++P S Sbjct: 129 RARHFGFMSACFG----FGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 192 STHVLNRESGMVKGSFSKVLAEPRLLKLNFGIMCLHILLMSTFVA-LPGQLADAGFPTAE 250 + + G+ + L+ F+ L GQ+ A + Sbjct: 185 HKGERRPLRREALNPLAS-------FRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG 237 Query: 251 HWKVYLATMLIAF--------GSVVPFIIYAEVKRKMKQVFVFCVGLIV-VAEIVLWNAQ 301 + + I S+ +I V ++ + +G+I +L Sbjct: 238 EDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFA 297 Query: 302 TQFWQLVVGVQLFFVAFNLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGSLGG 361 T+ W + + + + + L +++S++ +G G + L +G L Sbjct: 298 TRGW-MAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFT 356 Query: 362 WI 363 I Sbjct: 357 AI 358
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.024 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Query: 246 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHG-NKSQGARTRALADFKSGDIRVLVATDI 304 Q VLV T + + ++ +L K GI+ ++ + A A A + + V +AT++ Sbjct: 450 QPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAA---VTIATNM 506 Query: 305 AARGLDI 311 A RG DI Sbjct: 507 AGRGTDI 513
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 73.1 bits (179), Expect = 6e-18 Identities = 33/214 (15%), Positives = 77/214 (35%), Gaps = 17/214 (7%) Query: 13 KGEQAKKQLIAAALAQFGEYGMNATT-REIAAQAGQNIAAITYYFGSKEDLYLACAQWIA 71 + ++ ++ ++ AL F + G+++T+ EIA AG AI ++F K DL+ + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 72 DFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSKFISREQL 131 IGE E + P + +RE+++ + + + + + F E + Sbjct: 68 SNIGELEL---EYQAKFPGDP---LSVLREILIHVLESTVTEERRRLLMEII-FHKCEFV 120 Query: 132 SPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDANDTRMILHTHALIGEILAFRLGKETIL 191 A + + + + + +A L T + + G Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKH--CIEAKMLPADLMTRRAAIIMRGYISG----- 173 Query: 192 LRTGWTAFDEEKTELINQTVTCHIDLILQGLSQR 225 L W + + + ++ ++L+ Sbjct: 174 LMENWLFAPQSFD--LKKEARDYVAILLEMYLLC 205
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 62.2 bits (151), Expect = 6e-13 Identities = 43/259 (16%), Positives = 92/259 (35%), Gaps = 25/259 (9%) Query: 83 ALMQAKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRT 142 Q + + +A+ +LA E + + + + L + Sbjct: 201 QKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENK 260 Query: 143 ISA--NDLENARSSRDQAQATLKSAQDKLRQYRSGNREQ---DIAQAKASLEQAQAQLAQ 197 N+L +S +Q ++ + SA+++ + + + + Q ++ +LA+ Sbjct: 261 YVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAK 320 Query: 198 AELNLQDSTLIAPSDGTLLTRAV-EPGTVLNEGGTVFT-VSLTRPVWVRAYVDERNLDQA 255 E Q S + AP + V G V+ T+ V + V A V +++ Sbjct: 321 NEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFI 380 Query: 256 QPGRKVLLYTDGRPDKPYH---GQIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVT--- 309 G+ ++ + P Y G++ ++ A D R LV+ + I + Sbjct: 381 NVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA--------IEDQRLGLVFNVIISIEENC 432 Query: 310 ----DADDALRQGMPVTVQ 324 + + L GM VT + Sbjct: 433 LSTGNKNIPLSSGMAVTAE 451
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.7 bits (74), Expect = 0.005 Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 13/86 (15%) Query: 298 TPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAV 357 PR E + +LG P + + + K + Sbjct: 547 VPRLEKWLVHVLGKTPDDYKP-------------RRLRYLQLVGKYILMGHVARVMEPGC 593 Query: 358 KRGEILGLLGPNGAGKSTTFKMMCGL 383 K + L G G GKST + GL Sbjct: 594 KFDYSVVLEGTGGIGKSTLINTLVGL 619 Score = 29.3 bits (65), Expect = 0.047 Identities = 11/23 (47%), Positives = 13/23 (56%) Query: 39 YVTGLVGPDGAGKTTLMRMLAGL 61 Y L G G GK+TL+ L GL Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGL 619
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 47.2 bits (112), Expect = 3e-08 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 5/146 (3%) Query: 197 AREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALF 256 R Q T + +L + L I +G+ A A IG+ A + + L+L Sbjct: 92 GRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGA---GIGVVAAALGYTQWLSLL 148 Query: 257 YFTMVI--YGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQN 314 Y VI GL+ G+++++L + + + P + LSG V PV+ +P+ Q Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208 Query: 315 LTWINPIRHFTDITKQIYLKDASLDI 340 P+ H D+ + I L +D+ Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPVVDV 234
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 30.5 bits (69), Expect = 0.022 Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 532 GGLLAKVRDGDIIRVNGQTGELTLLVDEAELAAREP 567 + K++ GD++ V+G G + + E E+ A E Sbjct: 207 KEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEE 242
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 29.8 bits (67), Expect = 0.013 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 8/61 (13%) Query: 22 RHWGAWLGVAAMAGI-----ALTPPKFR---DPILARLGRFAGRLGKSSRRRALINLSLC 73 R +G W+ +A +AG L K R L L + R LS+ Sbjct: 224 RTFGPWMLLALLAGFMAFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSIL 283 Query: 74 F 74 Sbjct: 284 N 284
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 273 bits (699), Expect = 3e-93 Identities = 64/304 (21%), Positives = 115/304 (37%), Gaps = 25/304 (8%) Query: 4 KKTLLFAALSAALWGGATQA---------ADAAVVASLKPVGFIASAIADGVTETEVLLP 54 KK L + A VVA+ + I IA + ++P Sbjct: 2 KKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVP 61 Query: 55 DGASEHDYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLPEAKQVTIAQLEDVKPLL 114 G H+Y P DVK+ ADL+ + G +E +KL E + T E+ Sbjct: 62 IGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKT----ENKDYFA 117 Query: 115 MKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWLSPEIARATAVAIHGKLVELMPQSRAKLD 174 + EK ED H WL+ E A I +L P ++ + Sbjct: 118 VSDGVDVIYLEGQNEKGKEDPH-------AWLNLENGIIFAKNIAKQLSAKDPNNKEFYE 170 Query: 175 ANLKDFEAQLASTETQVGNELA--PFKGKGYFVFHDAYGYFEKQFGLTPLGHFTVNPEIQ 232 NLK++ +L + + ++ P + K A+ YF K +G+ + +N E + Sbjct: 171 KNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEE 230 Query: 233 PGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGT---LDPLGTNIKLGK 289 +++ + +L + K +F E +++V++ T++ + D + K G Sbjct: 231 GTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAEQGKEGD 290 Query: 290 TSYS 293 + YS Sbjct: 291 SYYS 294
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.007 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%) Query: 27 LKPG----KILTLLGPNGAGKSTLVRVVLGL 53 ++PG + L G G GKSTL+ ++GL Sbjct: 589 MEPGCKFDYSVVLEGTGGIGKSTLINTLVGL 619
>PilS_PF08805#PilS N terminal Length = 185 Score = 29.1 bits (65), Expect = 0.007 Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 29 AASNCWSNHVGIIIGHNGEDFLVAESRVPLSTITTLSRFIKRSSNQ 74 +A N W V I + F V E+ VP + ++ SS Sbjct: 110 SAKNPWGGSVTITTSSDKYSFNVVEANVPQKNCMAMVNALRSSSAI 155
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.8 bits (215), Expect = 5e-22 Identities = 31/124 (25%), Positives = 62/124 (50%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLS 61 +LV +D+A +R L + AG+ V +A ++ D+ + D+ +PDE+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L+ R + LP+LV++A+ ++ ++ GA DY+ KPF + E++ + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 LASQ 125 S+ Sbjct: 125 RPSK 128
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.046 Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 20/69 (28%) Query: 389 NACKYCLE------FVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQ 442 N K+ + + + + + + + VE+ G + +E Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE--------------ST 311 Query: 443 GVGLAVARE 451 G GL RE Sbjct: 312 GTGLQNVRE 320
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.016 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 46 LTLLGPSGCGKTTVLRLIAGLE-TVDSGRIMLDNED 80 + L G G GK+T++ + GL+ D+ + +D Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKD 634
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 28.4 bits (63), Expect = 0.044 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 8/67 (11%) Query: 137 GVNGDAVDPKSVTSWADL------WKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPK 190 G GD DP T+W D + ++ +L D + FQM + +GN T P Sbjct: 42 GFGGDPCDP--CTTWCDAISMRMGYYGDFVFDRVLKTDVNKEFQMGDKPTSTTGNATAPT 99 Query: 191 EIEAAYN 197 + A N Sbjct: 100 TLTAREN 106
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 55.9 bits (135), Expect = 1e-10 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 17/125 (13%) Query: 4 RILVLGASGYIGQHLVRTLSQQGHQILA---------AARHVDRLAKLQLANVSCHKVDL 54 + LV GA+G+IG H+ + L + GHQ++ + RL L HK+DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 55 SWPDNLPALLQD--IDTVYFLVH------SMGESGDFIAQERQVALNVRDALREVPVKQL 106 + + + L + V+ H S+ + LN+ + R ++ L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 107 IFLSS 111 ++ SS Sbjct: 122 LYASS 126
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 77.5 bits (191), Expect = 4e-18 Identities = 71/363 (19%), Positives = 124/363 (34%), Gaps = 65/363 (17%) Query: 13 MKVLVTGATSGLGRNAVEFLCQKGISVRA---------TGRNEAMSKLLEKMGAEFVPAD 63 MK LVTGA +G + + L + G V +A +LL + G +F D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 64 LTELVSSQAKVMLAGIDTLWHCS-------SFTSPWGTQQAFDLANVRATRRLGEWAIAW 116 L + + ++ S +P A+ +N+ + E Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPH----AYADSNLTGFLNILEGCRHN 116 Query: 117 GVRNLIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEKVINMLSQANPQTRFT 176 +++L++ SS S+Y + D + +A +K A+E + + S T Sbjct: 117 KIQHLLYASSSSVYGL-NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSH-LYGLPAT 174 Query: 177 ILRPQSLFGPHDK--VFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEA 234 LR +++GP + + + + M SI + + G D TY ++ A+ Sbjct: 175 GLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVI 234 Query: 235 CDKLPS--------------GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLD 280 RVYNI N L +Q L D L I+ + +P D Sbjct: 235 PHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGD 294 Query: 281 MIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAW 340 + T D E +G+ P T+ +G++ W Sbjct: 295 V----------------LETS-----------ADTKALYEVIGFTPETTVKDGVKNFVNW 327 Query: 341 LRD 343 RD Sbjct: 328 YRD 330
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 28.7 bits (64), Expect = 0.025 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 9/54 (16%) Query: 2 RRVFWLIAVALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADD 55 R+V L+ ALL AG A I K+G +LD Y ++ L HY +DD Sbjct: 3 RKVLALVIPALLAAGAAHAAEIYNKDGNKLDL-------YGKVDGL--HYFSDD 47
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 44.9 bits (106), Expect = 3e-07 Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 4/166 (2%) Query: 34 LDTIARNFSLSASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRRLIVSMTLLAAGGMLIT 93 L IA +F+ +S ++ TA L ++ G L D +RL++ ++ G +I Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 94 ASSQSLAMMILSTAL---TGLFSVVAQILVPLAATLASPDKRGKVVGTIMSGLLLGILLA 150 S +++ G + A ++V + A + RGK G I S + +G + Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMV-VVARYIPKENRGKAFGLIGSIVAMGEGVG 155 Query: 151 RTVAGLLANLGGWRTVFWVASVLMALMALALWRGLPQMKSETHLNY 196 + G++A+ W + + + + + + +++ + H + Sbjct: 156 PAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.017 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 12/94 (12%) Query: 23 PYQEILLTRLCMHMQSKLLENRNKMLKAQGINETLFMALITLESQENHSIQPSELSCALG 82 P QE+ L + + L R A+G + + T + ++L ALG Sbjct: 756 PEQELRLVETGVQGRLWALLTREGAPAAEGAAQKGYSVNTTFVTI-------ADLVQALG 808 Query: 83 -----SSRTNATRIADELEKRGWIERRESDNDRR 111 SS ++ D L + GW RE+ RR Sbjct: 809 ADPGKSSPMLEGQVRDWLNENGWEYLRETSGQRR 842
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 76.4 bits (188), Expect = 2e-17 Identities = 66/412 (16%), Positives = 122/412 (29%), Gaps = 97/412 (23%) Query: 25 LLLTLLFIIIAVAIGIYWFLVLRHFEETDDA----YVAGNQIQIMSQVSGSVTKVWADNT 80 L FI+ + I VL E A +G +I + V ++ Sbjct: 57 PRLVAYFIMGFLVIAFILS-VLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEG 115 Query: 81 DFVKEGDVLVTLDPTDARQAFDKA------------------------------------ 104 + V++GDVL+ L A K Sbjct: 116 ESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPY 175 Query: 105 ----------------KTALASSVRQTHQLMINSKQLQANIE--VQKIALAKAQSDYNRR 146 K ++ Q +Q +N + +A + +I + S + Sbjct: 176 FQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Query: 147 VL-----LGNANLIGREELQHARDAVTSAQAQLDVAIQQYNANQAMILGTKLEDQPAVQQ 201 L L + I + + + A +L V Q ++ IL K E Q Q Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 202 AATEVRNSW------------------LALERTRIVSPMTGYVSRRAVQ-PGAQISPTTP 242 E+ + + + I +P++ V + V G ++ Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355 Query: 243 LMAVVPA-TNMWVDANFKETQIANMRIGQPVTITTDIYGDDVKY---TGKVVGLDMGTGS 298 LM +VP + V A + I + +GQ I + + +Y GKV + + Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAF-PYTRYGYLVGKVKNI-----N 409 Query: 299 AFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYPLRIGLSTLVSVNTTNR 350 ++ G V+ + + PL G++ + T R Sbjct: 410 LDAIE--DQRLGLVFNVIISIEENCLST--GNKNIPLSSGMAVTAEIKTGMR 457
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 292 bits (750), Expect = e-105 Identities = 131/170 (77%), Positives = 148/170 (87%) Query: 2 PLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFA 61 PLLDSFTVDHTRM APAVRVAKTM TP GD ITVFDLRF PNK+++ E+GIHTLEHL+A Sbjct: 1 PLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYA 60 Query: 62 GFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIP 121 GFMRNHLNG+ VEIIDISPMGCRTGFYMSLIGTP EQ+VADAW AAMEDVLKV++QN+IP Sbjct: 61 GFMRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIP 120 Query: 122 ELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELALPKEKLQELHI 171 ELN YQCGT MHSL EA+ IA++ILE V +N N+ELALP+ L+EL I Sbjct: 121 ELNEYQCGTAAMHSLDEAKQIAKNILEVGVAVNKNDELALPESMLRELRI 170
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 64.4 bits (157), Expect = 9e-14 Identities = 67/337 (19%), Positives = 115/337 (34%), Gaps = 58/337 (17%) Query: 4 TVAVTGATGFIGKYIIDNLLVRGFHVRALT----------RTARAHV--NDNLTWVRGSL 51 VTGA GFIG ++ LL G V + + AR + + + L Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 52 EDTHSLSELVA--GASAVVHCAGQ--VRGHKEE--IFTHCNVDGSLHLMQAAKESGFCQR 105 D +++L A V + VR E + N+ G L++++ + + Q Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI-QH 120 Query: 106 FLFISSLA---------------ARHPELSWYANSKHVAEQRLTAMADEITLGV----FR 146 L+ SS + HP +S YA +K E L A G+ R Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHP-VSLYAATKKANE--LMAHTYSHLYGLPATGLR 177 Query: 147 PTAVYGP-GDKELKPLF--DWMLRGLLPRL-GAPDTQLSFLHVTDFAQAVGQWLSAETVQ 202 VYGP G ++ ML G + + F ++ D A+A+ + + V Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAI---IRLQDVI 234 Query: 203 TQTYELCDGVAGSYDWQRVQQLAADARCGSVRMVGIPLPVLTCLADISTALSRLAGKEPM 262 G+ + S P+ ++ + + AL A K + Sbjct: 235 PHADTQWTVETGTPAASIAPYRVYNIGNSS------PVELMDYIQALEDALGIEAKKNML 288 Query: 263 LTRSKIRELTHADWSASNNRISEDINWFPGISLEHAL 299 + T AD A E I + P +++ + Sbjct: 289 PLQPGDVLETSADTKALY----EVIGFTPETTVKDGV 321
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 72.0 bits (176), Expect = 6e-16 Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 38/184 (20%) Query: 90 GLGSGVIINASKGYVLTNNHVINQAQKISIQL------------NDGREFDAKLIGSDDQ 137 + SGV++ K +LTN HV++ L +G ++ + Sbjct: 102 FIASGVVVG--KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 159 Query: 138 SDIALLQIQN-------PSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALG 190 D+A+++ + ++++ + +V G P V+ + Sbjct: 160 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP-------VATMW 212 Query: 191 RSGLNLEGLEN-FIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSN 249 S + L+ +Q D S GNSG + N E+IGI+ G+ Sbjct: 213 ESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFNGA 263 Query: 250 MART 253 + Sbjct: 264 VFIN 267
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 52.7 bits (126), Expect = 8e-10 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 26/160 (16%) Query: 77 RTLGSGVIMDQRGYIITNKHVINDADQIIVALQ------------DGRVFEALLVGSDSL 124 + SGV++ + ++TNKHV++ AL+ +G + Sbjct: 101 TFIASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 159 Query: 125 TDLAVLKI-------NATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATG 177 DLA++K + + ++ + + G P + T + G Sbjct: 160 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD-KPVATMW--ESKG 216 Query: 178 RIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINT 217 +I + +Q D S GNSG + N E++GI+ Sbjct: 217 KI---TYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHW 253
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 27.7 bits (61), Expect = 0.049 Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 27/167 (16%) Query: 3 VAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGED 62 + GAA GIG+A+A L G+ ++ D P V S A + F + Sbjct: 11 AFITGAAQGIGEAVARTL---ASQGAHIAAVDYNP-EKLEKVVSSLKAEARHAEAFPADV 66 Query: 63 ATPA------------LEGADVVLISAGVARK------PGMDRSDLFNVNAGIVKNLVQQ 104 A + D+++ AGV R + F+VN+ V N + Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 105 VAKTCPK----ACIGIITNPVNTT-VAIAAEVLKKAGVYDKNKLFGV 146 V+K + + + +NP ++AA KA K G+ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGL 173
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 169 bits (430), Expect = 4e-57 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 15 KALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKFGAVRTRNAKMEMVYCLPAELG 74 + ++ + +Q E+V L++ G+ N+ Q+ VSR + + V+ Y LPA+ Sbjct: 11 REIITANEIETQDELVDILKKDGY-NVTQATVSRDIKELHLVKVPTNNGSYKYSLPADQR 69 Query: 75 VPTTSSPLKNLV---LDIDYNDAVVVIHTSPGAAQLIARLLDSLGKAEGILGTIAGDDTI 131 S ++L+ + ID ++V+ T PG AQ I L+D+L E I+GTI GDDTI Sbjct: 70 FNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEE-IMGTICGDDTI 128 Query: 132 FTTPANGFTVKDLYEAILELF 152 K + + ILEL Sbjct: 129 LIICRTHDDTKVVQKKILELL 149
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.4 bits (131), Expect = 2e-10 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 16/163 (9%) Query: 6 RKFSRTAITVVLVILAFIAIFNAWVYYTE----SPWTRDARFSADVVAIAPDVSGLITQV 61 SR V I+ F+ I + + S I P + ++ ++ Sbjct: 51 TPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEI 110 Query: 62 NVHDNQLVKKGQVLFTIDQPR-------YQKALEEAQADVAYYQVLAQEKRQEAGRRNRL 114 V + + V+KG VL + Q +L +A+ + YQ+L++ E + L Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRS--IELNKLPEL 168 Query: 115 GVQAMSREEIDQANNVL---QTVLHQLAKAQATRDLAKLDLER 154 + + VL + Q + Q + +L+L++ Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211 Score = 51.4 bits (123), Expect = 2e-09 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 15/147 (10%) Query: 100 LAQEKRQEAGRRNRLGVQ-AMSREEIDQANNVLQT-VLHQLAKAQAT-------RDLAKL 150 E R + ++ + ++EE + + +L +L + + Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE 323 Query: 151 DLERTVIRAPADGWVTNLNVYT-GEFITRGSTAVALVKQNSFY-VLAYMEETKLEGVRPG 208 + +VIRAP V L V+T G +T T + +V ++ V A ++ + + G Sbjct: 324 RQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVG 383 Query: 209 YRAEIT----PLGSNKVLKGTVDSVAA 231 A I P L G V ++ Sbjct: 384 QNAIIKVEAFPYTRYGYLVGKVKNINL 410
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.7 bits (64), Expect = 0.024 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 164 ASSVEDLVTQTLEFTIEEVNADRNV-SNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI 222 A +V+D VTQ +E + ++ + S + + + L + D A QV ++L + Sbjct: 54 AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQL 113 Query: 223 SK 224 + Sbjct: 114 AT 115
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 132 bits (334), Expect = 4e-40 Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 9/226 (3%) Query: 28 AAKPATTADSKAAFKNDDQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAF 87 A A A + D K +Y++GA LG K + GI ++ D L G+QD Sbjct: 14 AMSTAMAATDATSLTTDKDKLSYSIGADLG-------KNFKNQGIDINPDVLAKGMQDGM 66 Query: 88 A-DKSKLSDQEIEQTLQAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSST 146 + + L++++++ L F+ + + A+ K A +N+AKG + + G+ + Sbjct: 67 SGAQLILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPS 126 Query: 147 GLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYIRGEPLSFRLDGVIPGWTEGL 206 GL Y++++AG G P SDTV V Y GTLIDG FD++ G+P +F++ VIPGWTE L Sbjct: 127 GLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEAL 186 Query: 207 KNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDVKPA 251 + + G ++ +P +LAYG V G I PN TL+F + L+ VK A Sbjct: 187 QLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVKKA 232
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 27.7 bits (61), Expect = 0.024 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 26/140 (18%) Query: 12 YAHPESQDSVANRVLLKPATQLSNVTAHDLYAHYPDFFID-----------IPREQALLR 60 Y P + D N+V P + + HD+ ++ D F I + + Sbjct: 9 YQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCV 68 Query: 61 EHEVIVFQRPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAGKYWRSVITTGEPESA-- 118 + + P+ + P DR L F GPG N +G Y +IT PE Sbjct: 69 QLGI-----PVVYTAQPGSQNP-DDRALLTDFW-GPGLN--SGPYEEKIITELAPEDDDL 119 Query: 119 ----YRYDALNRYPMSDVLR 134 +RY A R + +++R Sbjct: 120 VLTKWRYSAFKRTNLLEMMR 139
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 34.7 bits (79), Expect = 0.001 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 22/152 (14%) Query: 504 KVEPFDGDLEDYQQWLSDVQKQENQTDDAPKENANSAQARKDQKRREAELRAQTQPLRKE 563 + D + ++ E + D ++ R+ +R R + L E Sbjct: 272 AMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAE 331 Query: 564 IARLEKEME---------------------KLNAQLAQAEEKLGDSELYDQSRKAELTAC 602 +LE++ + +L A+ + EE+ SE QS + +L A Sbjct: 332 HQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDAS 391 Query: 603 LQQQASAKSGLEECEMAWLEALEQLEQMLLEG 634 + + + LEE L ALE+L + L E Sbjct: 392 REAKKQVEKALEEANSK-LAALEKLNKELEES 422 Score = 30.4 bits (68), Expect = 0.025 Identities = 14/119 (11%), Positives = 36/119 (30%), Gaps = 8/119 (6%) Query: 513 EDYQQWLSDVQKQENQTDDAPKENANSAQARKDQKRREAELRAQTQPLRKEIARLEKEME 572 + + ++ + E A A + D ++ + +++ Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFST-------ADSAKIK 179 Query: 573 KLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEALEQLEQML 631 L A+ A E + + E + TA + + ++ A LE+ + Sbjct: 180 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA-LAARKADLEKALEGA 237
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 9e-24 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 2/117 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 IL+ DDD + ++L + L G++V + + + DL++ DV+MP +N D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 L +++ PV++++A+ + + + E GA DYLPKPF+ EL+ I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 0.031 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 28/108 (25%) Query: 354 LENIVRNALRY------SHTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTD 407 ++ +V N +++ KI + D +T+ V++ G +E Sbjct: 260 VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE---------- 309 Query: 408 EARDRESGGTGLGLAIVETAIQQHRGW---VKAEDSPLGGLRLVIWLP 452 TG GL V +Q G +K + G + ++ +P Sbjct: 310 --------STGTGLQNVRERLQMLYGTEAQIKLSEKQ-GKVNAMVLIP 348
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.021 Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 17/163 (10%) Query: 170 HVFVGAVLPFLVGFA-LGNLDPELREFFSKAVQTLIPF-FAFALGNTID-LTVIAQTGLL 226 +F +L FLV + L N+ L + V L F A G +I+ LT+ + Sbjct: 343 TLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAI 402 Query: 227 GILLGVAVIIVTGIPLIIADKLIGGGDGTAGIAASSSAGAAV--ATPVLIAEMVPA---- 280 G+L+ A+++V + ++ + A + S A+ VL A +P Sbjct: 403 GLLVDDAIVVVENVERVMMED--KLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460 Query: 281 ------FKPMAPAATSLVATAVIVTSILVPILTSIWSRKIKAR 317 ++ + S +A +V+V IL P L + + + A Sbjct: 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAE 503
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 27.4 bits (61), Expect = 0.049 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%) Query: 2 SYTLPSLPYAYDALEPHFDKQTMEIHH 28 S T P+ PY + L H D M HH Sbjct: 298 SSTNPTRPYTVNTLAEHLD-MLMVCHH 323
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 29.0 bits (65), Expect = 0.024 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 55 KLAGDNVKVTLVSSGYDLGQQVSQIDNFIAANVDMIIL---NAADSKGIGPAVKRAKDAG 111 L +KV + I I VD+I + D + AVK+A + Sbjct: 111 DLLI--IKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLGGPEDVPELHEAVKKAVASQ 168 Query: 112 IVVVA 116 I+V+ Sbjct: 169 ILVMC 173
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 29.5 bits (66), Expect = 0.013 Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 7/118 (5%) Query: 116 GGGNLIVELWNADSNEQTADSDVTVVIDGCRQKHTAGTQLRLSPGESICLPPGLYHSFWA 175 G ++++E+ S+ A S + + T + + GE++ + GL + Sbjct: 496 EGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVG-GLLDKSVS 554 Query: 176 ET-----GFGDV-LVGEVSSVNDDDHDNHFLQPLDRYNLINEDEPAQLVLCNKYRQFR 227 +T GD+ ++G + L R +I + + + +Y F Sbjct: 555 DTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSGQYTAFN 612
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 1e-23 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 8 KPVVLVVDDDTAICALLQDVLSEHVFTVSVCHTGQEAILRIEGDPDIALVVLDMMLPDTN 67 +LV DDD AI +L LS + V + I LVV D+++PD N Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDEN 61 Query: 68 GLRVLQQIQKLRPTLPVVMLTGMGSKSDVVVGLEMGADDYICKPFTPRVVVARLKAVLRR 127 +L +I+K RP LPV++++ + + E GA DY+ KPF ++ + L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>INTIMIN#Intimin signature. Length = 939 Score = 47.8 bits (113), Expect = 2e-08 Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 21/230 (9%) Query: 9 GVVEVSGTDKNETGNWSEESDGVYTTTRTAKIAGDRHYATLKLSTWSSAQQSDAYAIRES 68 VSGT + + G T T + G + + K + +SA ++A + Sbjct: 597 SFNIVSGTAVLSANSANTNGSGKATVTLKSDKPG-QVVVSAKTAEMTSALNANAVIFVDQ 655 Query: 69 GAVLAYSSIVTDKTTYTAGGAIKVTVTLKDSY-ENLVGGQRDAINLAIQLPNTKTESIAW 127 + + I DKTT A G +T T+K + V Q + + TE Sbjct: 656 TKA-SITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEK--- 711 Query: 128 NEDQKGIYTATYTALLLGTGLKAQLQMSGWANALTSNDYSISGDAASAQIVAMQVTTGNP 187 D G T T+ G L + ++S A + + + + + GN Sbjct: 712 -TDTNGYAKVTLTSTTPGKSLVSA-RVSDVAVDVKAPEVEFFTT--------LTIDDGNI 761 Query: 188 DVLANGSDRHTVNVRVE-DQFGNVLPEQTVTFTVT----KGAAVFANAGQ 232 +++ G V ++ Q +T A+V A++GQ Sbjct: 762 EIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQ 811 Score = 37.0 bits (85), Expect = 7e-05 Identities = 56/247 (22%), Positives = 88/247 (35%), Gaps = 35/247 (14%) Query: 24 WSEESDGVYTTTRTAKIAGDRH-----YATLKLSTWSSAQQSDAYAIRESGAVLAYSSIV 78 + + VY T A DR+ L ++ S+ Q D + + Sbjct: 517 YVQGGSNVYKVTARAY---DRNGNSSNNVLLTITVLSNGQVVDQVGV---------TDFT 564 Query: 79 TDKTTYTAGG--AIKVTVTLKDSYENLVGGQRD-AINLAIQLPNTKTESIAWNEDQKGIY 135 DKT+ A G AI T T+K + I + + + N + G Sbjct: 565 ADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANS----ANTNGSGKA 620 Query: 136 TATYTALLLGTGLKAQLQMSGWANALTSNDYSISGDAASAQIVAMQVTTGNPDVLANGSD 195 T T + G + + + + + AS + TT +ANG D Sbjct: 621 TVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTT----AVANGQD 676 Query: 196 RHTVNVRVEDQFGNVLPEQTVTFTVTKGAAVFANAGQSADIRTDAHGMAEVDLSSTVADA 255 T V+V + + Q VTFT T S + +TD +G A+V L+ST Sbjct: 677 AITYTVKV-MKGDKPVSNQEVTFTTT-----LGKLSNSTE-KTDTNGYAKVTLTSTTPGK 729 Query: 256 STVEAKV 262 S V A+V Sbjct: 730 SLVSARV 736
>INTIMIN#Intimin signature. Length = 939 Score = 296 bits (759), Expect = 8e-93 Identities = 104/492 (21%), Positives = 193/492 (39%), Gaps = 41/492 (8%) Query: 1 MALFGKDERQNDPHAITAGLSYTPVPLISFSAEQRQGKQGENDTRIGMELTLQPGHSLQK 60 +ALF D+ Q++P A T G++YTP+PL++ + R G END M+ Q + Sbjct: 358 VALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQ 417 Query: 61 QLDPAEVAARRSLVGSRYDLVDRNNNIVLEYLKKELVRLTLTDPLKGKPGEVKSLVSSLQ 120 Q++P V R+L GSRYDLV RNNNI+LEY K++++ L + + G + + ++ Sbjct: 418 QIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTERSTQKIQLIVK 477 Query: 121 TKYALKGYDIEAASLQSAGGKVAVSG----KDIQVTIPPYRFTAMPETDNIYPIAVTAED 176 +KY L + ++L+S GG++ SG +D Q +P Y + N+Y + A D Sbjct: 478 SKYGLDRIVWDDSALRSQGGQIQHSGSQSAQDYQAILPAY----VQGGSNVYKVTARAYD 533 Query: 177 SKGNFSRREE-SMVVVEKPTLSLADSTLSVDLQILLADGKSTSMLTYTA------RDSSG 229 GN S ++ V+ + A T +TYTA + Sbjct: 534 RNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQAN 593 Query: 230 KPIPGMTLKTQAKGLQDFALSEWKDNGNGTYTQIVTAGKTSGALSLMPQFNGDDIAKTPA 289 P+ + G + + NG+G T + + K + A Sbjct: 594 VPVSFNIV----SGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANA 649 Query: 290 LIAIVANTASRADSTIETDQDNYVAGKPIVVKVTLRDD-NGNGVTGRKELLKQTVKVDNT 348 +I + AS + I+ D+ VA + T++ V+ ++ T+ + Sbjct: 650 VIFVDQTKASI--TEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSN 707 Query: 349 KADAVSAWTEESEGIYKASYTAHLIGDKLTA------QLTMPGWQTKHSDAFSIAGDKDT 402 + ++ G K + T+ G L + + + + + +I Sbjct: 708 STE-----KTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIE 762 Query: 403 AKIAAMQITANNTVARRDHNTVAVTVRDVHQNLLQGQNVTFTVVNGAAVFADPNGGIVTT 462 ++ + + + + T+ N A D + G VT Sbjct: 763 IVGTGVKGKLPTVWLQYGQVNLKASGGNG--------KYTWRSANPAIASVDASSGQVTL 814 Query: 463 DKDGIASVNLAS 474 + G ++++ S Sbjct: 815 KEKGTTTISVIS 826 Score = 33.9 bits (77), Expect = 0.002 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 21/151 (13%) Query: 355 AWTEESEGIYKASYTAHLIGDKLT--AQLTM----PGWQTKHSDAFSIAGDKDTAKIAAM 408 A+ + +YK + A+ + LT+ G DK +AK Sbjct: 516 AYVQGGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAK---- 571 Query: 409 QITANNTVARRDHNTVAVTVRDVHQNLLQGQNVTFTVVNGAAVFADPNGGIVTTDKDGIA 468 A+ T A T TV+ V+F +V+G A + T+ G A Sbjct: 572 ---ADGTEAI----TYTATVKKNGVAQA-NVPVSFNIVSGTA---VLSANSANTNGSGKA 620 Query: 469 SVNLASDQAVNSLIKAEINGSSQSVEVSFTL 499 +V L SD+ ++ A+ + ++ + + Sbjct: 621 TVTLKSDKPGQVVVSAKTAEMTSALNANAVI 651
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.9 bits (88), Expect = 5e-05 Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 13/208 (6%) Query: 33 IIVEFLPVSLLTP----MAQDLGISEGVA---GQSVTVTAFVAMFASLFITQTIQATDRR 85 + ++ + + L+ P + +DL S V G + + A + + + RR Sbjct: 14 VALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRR 73 Query: 86 YVVILFAVLLTISCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKA 145 V+++ + +++ A +L IGR G+ G A++ + + + Sbjct: 74 PVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARH 132 Query: 146 LSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMG----VLCIFWIIKSLPSLPGK 201 + +V LG +G F AAA + + F + +S Sbjct: 133 FGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRP 191 Query: 202 PSHQKQNTFRLLQRPGVMAGMIAIFMSF 229 + N + M + A+ F Sbjct: 192 LRREALNPLASFRWARGMTVVAALMAVF 219
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 37.4 bits (87), Expect = 1e-04 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 17/105 (16%) Query: 22 AVSRGDVVADYIIDNVSILDLINGGEISGPIVIKGRYIAGVG----------AEYTDAPA 71 V+R D +I N ILD + G + I +K IA +G P Sbjct: 60 QVTREGGAVDTVITNALILD--HWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPG 117 Query: 72 LQRIDARGATAVPGFIDAHLHIESSMMTPVTFETATLPRGLTTVI 116 + I G G +D+H+H + P E A L GLT ++ Sbjct: 118 TEVIAGEGKIVTAGGMDSHIH----FICPQQIEEA-LMSGLTCML 157
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.9 bits (80), Expect = 6e-04 Identities = 61/372 (16%), Positives = 133/372 (35%), Gaps = 32/372 (8%) Query: 49 FNIAQNDMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFMLILSAIC 108 N++ D+ + + + F +T+ +G + +D K+ L F +I++ C Sbjct: 33 LNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIIN--C 90 Query: 109 MLGFSASMGSGSVSLFLMIAFYALSGFFQSTGGSCSYSTI----TKWTPRRKRGTFLGFW 164 +G SL +M + F Q G + + + ++ P+ RG G Sbjct: 91 FGSVIGFVGHSFFSLLIM------ARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLI 144 Query: 165 NISHNLGGA-----GAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPES 219 +G G +YL +I + P ++ L+ + ++ D Sbjct: 145 GSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGI 204 Query: 220 YGLGKAEELFGEEISEEDKETESTDMTKWQIFVEYVLK--NKVIWLLCFANI-FLYVVRI 276 + F + + + IFV+++ K + + NI F+ V Sbjct: 205 ILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLC 264 Query: 277 GIDQWSTVYAFQELKLSKAVAIQGFTLFEAG------AMVGTLLWGWLSDLANGRRG--L 328 G + TV F + + + E G + +++G++ + RRG Sbjct: 265 GGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLY 324 Query: 329 VACIALALIIA---TLGVYQHASNEYIYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIG 385 V I + + T ++ ++ + +F LG L F ++ + + ++A G Sbjct: 325 VLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEA-G 383 Query: 386 AADGIKGTFAYL 397 A + ++L Sbjct: 384 AGMSLLNFTSFL 395
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.7 bits (90), Expect = 4e-05 Identities = 65/408 (15%), Positives = 137/408 (33%), Gaps = 60/408 (14%) Query: 30 RHILLTIWLGYALFY--FTRKSFNAAVPEILANGVLSRSDIGLLATLFYITYGVLKFVSG 87 RH + IWL F+ N ++P+I + + + T F +T+ + V G Sbjct: 11 RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70 Query: 88 IVSDRSNARYFMGTGLIATGIINILFGFSTSLWAFAVLWVLNAFFQGWGS---PVCARLL 144 +SD+ + + G+I +++ S F L ++ F QG G+ P ++ Sbjct: 71 KLSDQLGIKRLLLFGIIINCFGSVIGFVGHS---FFSLLIMARFIQGAGAAAFPALVMVV 127 Query: 145 TAWY-SRTERGGWWALWNTAHNVGGALIPIVMAAAALHYGWRAGMMIAGCMAIVVGIFLC 203 A Y + RG + L + +G + P + A + W ++ M ++ + Sbjct: 128 VARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW--SYLLLIPMITIITVPF- 184 Query: 204 WRLRDRPQALGLPAVGEWRHDALEIAQQQEGAGLTRKEILTKYVLLNPYIWLLSFCYVLV 263 + L +I G L I+ + Y VL Sbjct: 185 --------LMKLLKKEVRIKGHFDIK----GIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 YVV-----RAAINDWGNLYMSETLGVDLVTANTAVTMFELGGFI-----------GALVA 307 +++ R + + + + + + + + + GF+ A Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 308 GWGSDKLFNGNRGPMNLIFAAGILL-SVGSLWLMPFASYVMQATCFFTIGFFVFGPQMLI 366 GS +F G + + GIL+ G L+++ + + F T F + + Sbjct: 293 EIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFL-SVSFLTASFLLETTSWFM 351 Query: 367 ---------GMAAAECS---------HKEAAGAATGFVGLFAYLGASL 396 G++ + ++ AGA + ++L Sbjct: 352 TIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399
>PF06580#Sensor histidine kinase Length = 349 Score = 39.8 bits (93), Expect = 2e-05 Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 11/142 (7%) Query: 366 LRPRQLDDLTLEQAIRSLMREMELEGRGIVRHLEWRIDESALSENQRVTLFRVCQEGLNN 425 LR ++L + + ++L L++ + + +V + Q + N Sbjct: 208 LRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPM-LVQTLVEN 266 Query: 426 IVKHA-----DASAVTLQGWQQDERLMLVIEDDGSGLPPGSGQ-QGFGLTGMRERVTALG 479 +KH + L+G + + + L +E+ GS + + G GL +RER+ L Sbjct: 267 GIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLY 326 Query: 480 G---TLHISCLHG-TRVSVSLP 497 G + +S G V +P Sbjct: 327 GTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.2 bits (146), Expect = 4e-13 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 20/174 (11%) Query: 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDIS 61 T+ + DD +R+ Q L V + + + + D+ MPD + Sbjct: 4 ATILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GLELLSQLPK---GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIVAVHTVATG 118 +LL ++ K + +++S ++ +A GA +L K ELI + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR---- 117 Query: 119 GCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQG---MAVKEIAAELGLSPKTV 169 A+ R L + + + + + A L + T+ Sbjct: 118 --------ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL 163
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 32.3 bits (73), Expect = 0.004 Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 289 ETSTPDLELARRFAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYK 346 ET+ PD+ L A P L Y + N D +T + + QL+++ Sbjct: 544 ETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQLAELNAT 601