>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 32.4 bits (73), Expect = 0.005 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 278 HALRDGFFHADMHPGNLFLDK-EGRLVAVDFGIMGRLGMKERRF 320 H + G H D+ PGN+ D+ G V +D G+ R G + + F Sbjct: 260 HLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPKGF 303
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 30.0 bits (67), Expect = 0.016 Identities = 8/29 (27%), Positives = 10/29 (34%) Query: 41 EPADPSEPPSAPPTPAPPPEPMVPQPGVA 69 + P P P P P P P P+ Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPV 87
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 28.1 bits (63), Expect = 0.035 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 17/85 (20%) Query: 668 IDAGAMKLELGPVDAAKAIEAAAEGVQDRLAT-DRIRLKVQVDPNVGTFVGDERRVVQVL 726 I A EL D+A A++A V LA ++++L G F ER Sbjct: 8 IAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQL-----IGFGNFEVRER------ 56 Query: 727 YNLLANAVGFSPQ-DSTVLVSARRT 750 A G +PQ + + A + Sbjct: 57 ----AARKGRNPQTGEEIKIKASKV 77
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 26.5 bits (58), Expect = 0.019 Identities = 12/31 (38%), Positives = 16/31 (51%) Query: 65 GLAYRRCELAWVNGDQIGVTFLKQGKKKANK 95 L Y E+ NG+ I K+G KKA+K Sbjct: 118 SLNYNELEVLAKNGETIENFVPKEGVKKADK 148
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 110 bits (277), Expect = 2e-35 Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 3 KSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARAGR 62 K +L+ ++AE L ++D V+A+ + + LA+G++V+L GFG F V+ R AR GR Sbjct: 4 KQDLIAKVAEAT-ELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 63 NPRTGAHVPVDQKSVPFFKTGKEMRERL 90 NP+TG + + VP FK GK +++ + Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 30.6 bits (69), Expect = 0.015 Identities = 9/26 (34%), Positives = 9/26 (34%) Query: 104 EESWGKLEKAFQNNEKVNGVIFNQVK 129 E SW L K Q NG V Sbjct: 212 ENSWSALSKQIQIASTNNGQFETPVV 237
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 57.5 bits (139), Expect = 5e-11 Identities = 66/307 (21%), Positives = 110/307 (35%), Gaps = 29/307 (9%) Query: 65 ALMLPVMFISMP-AGAIADMYDRRIVALVSLLVALGGAVTLTVLAWLGLVTPERLLALCF 123 AL + F P GA++D + RR V LVSL G AV ++A + +L + Sbjct: 50 ALYALMQFACAPVLGALSDRFGRRPVLLVSLA---GAAVDYAIMATAPFLW---VLYIGR 103 Query: 124 VIGSGMALMGPAWQSSVSEQVPPETLPAAVALNGISYNIARSFGPAIGGVVVAAAGAVAA 183 ++ G + +++ + + GP +GG++ + Sbjct: 104 IVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPF 163 Query: 184 FAANALLYLPLLAALFLWRRVVEPSRLPREPLNRAIVSGVRYIIHSPSIRIVLIRTLVTG 243 FAA AL L L FL + R P ++ R+ + ++ + Sbjct: 164 FAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQ 223 Query: 244 VIGGSISALMPLVARDLLHGGAQTYGIMLGAFG-MGAVVGALNIGEIRKRLSGEAAIRSC 302 ++G +AL + D H A T GI L AFG + ++ A+ G + RL A+ Sbjct: 224 LVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM-- 281 Query: 303 ALTLGAATAAVGLSGEPVLTAAALVVAGAVWMLAVALFNIGVQLSAPRWVAGRALAAFQA 362 LG G L A WM + + G + A QA Sbjct: 282 ---LGMIADGTGY--------ILLAFATRGWMAFPIMVLLA--------SGGIGMPALQA 322 Query: 363 AISGGIA 369 +S + Sbjct: 323 MLSRQVD 329
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 32.8 bits (74), Expect = 3e-04 Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 5/126 (3%) Query: 10 IALASATTAQAGGTRSLSLAPNDTAAPAPRPAYVQQAGEVTITPAP-VPAGAAGQPATQP 68 + +A T G + P A R + +V + P P + G+A P QP Sbjct: 268 VEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQP 327 Query: 69 VQPAPAAAAPVANSTPATQPAAAAAPTPD----PTGSVQKSSRRSTSAAKSARAGKPRGK 124 + A P N P P P PD P + + T A +P G+ Sbjct: 328 LPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPDRPNGR 387 Query: 125 SWTEAR 130 E + Sbjct: 388 HRKERK 393
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.1 bits (101), Expect = 4e-06 Identities = 48/243 (19%), Positives = 73/243 (30%), Gaps = 47/243 (19%) Query: 421 QTPVASLPSERNSVIESSEFADAVLAPPTRATIPEGLAEPP------------------- 461 Q V S+PS + E AP T + E +AE Sbjct: 1004 QADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTA 1063 Query: 462 --REVARQSQLDVIAPTPQDNVPPRPAETAVSDPAV--DTPVQEAVDKPVDRPVDNPVEK 517 REVA++++ +V A T + V +ET + +T E +K K Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK----------AK 1113 Query: 518 TEDNRLIEVSSATPAEPAPPLQASGPTDADSETPEAERDEA------------ESEAEAP 565 E + EV T P Q T P E D ++ E P Sbjct: 1114 VETEKTQEVPKVT--SQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 566 AKPADPVATAPTPLFRTRSDLGKPPETPLQTIVPIMRPPDDPGVDDEDQTRDEFAEQIAP 625 AK P T + E P T +P + ++ + R + + P Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVP 1231 Query: 626 KAQ 628 Sbjct: 1232 HNV 1234
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 47.6 bits (113), Expect = 1e-08 Identities = 48/211 (22%), Positives = 72/211 (34%), Gaps = 34/211 (16%) Query: 15 ATALAMTGARAADMPATTYKAPAYASAPAPFSWTGFYAGANVGGAFTGNDSVTNLAGGNG 74 A A+A+ A A A A +Y GA +G + + T NG Sbjct: 5 AIAIAVALAGFA------------TVAQAAPKDNTWYTGAKLGWSQYHD---TGFINNNG 49 Query: 75 G-----KLSGVIGGMQAGYNYQVSPLFVVGIENDLDFTGLSRQGDLVNPAVSVPWLTTGR 129 +G GG YQV+P G E D+ G V Sbjct: 50 PTHENQLGAGAFGG------YQVNPYV--GFEMGYDWLGRMPYKGSVENGAYKAQGVQLT 101 Query: 130 ARAGFTMLDQRLFLYGTAGLA-----AGELKDGPVHKVKMGWTAGGGAEWAFLPKWSAKL 184 A+ G+ + D L +Y G G H + GG E+A P+ + +L Sbjct: 102 AKLGYPITDD-LDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRL 160 Query: 185 EYLYTDLKHDALPDWRAAKIHSVRVGLNYHF 215 EY +T+ DA + +G++Y F Sbjct: 161 EYQWTNNIGDAHTIGTRPDNGMLSLGVSYRF 191
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 26.6 bits (58), Expect = 0.015 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 10/59 (16%) Query: 33 HQRVVRHGHLPEREVMTGIGPV---------AVRQPRVRDREAAATDPDRTRFSPSILP 82 HQ + H L E + +TG PV AV +V D E A + ++T + SILP Sbjct: 283 HQTALEHPELSELKTVTGTNPVFAGANYAAWAVNVAQVIDSE-TADNLEKTTAALSILP 340
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 30.6 bits (69), Expect = 0.022 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 105 SRTAGHPEFGHAAGIETTTGPLGQGIATAV-GMALSERMLNARFGDDLVDHHTYVIAGDG 163 S + E G + T L +G A+ G LS +L+ R VD TY+ + Sbjct: 374 SSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSNLL 433 Query: 164 CLMEGI 169 L GI Sbjct: 434 LLFSGI 439
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 379 bits (975), Expect = e-130 Identities = 144/501 (28%), Positives = 225/501 (44%), Gaps = 53/501 (10%) Query: 5 GTVLIVARRGGDWTDCLDVLS---ERYAYRVVLVGSVAEALTTMSGIHVDLAVAEDRKDE 61 T+L+ D VL+ R Y V + + A ++ DL V + + Sbjct: 4 ATILVA----DDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 62 SIGLDFLTRLRVSHPEIMRVYVATGGSPLSYGTLTKAAIYQFLLTPLDATQLGLVVERAL 121 D L R++ + P++ + ++ + ++ ++ Y +L P D T+L ++ RAL Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 122 EARELARRHRILSREFKISGDVLRLGERRDLLFRPESHQFEKLVYASEKMAELCDLAKQA 181 + +S LV S M E+ + + Sbjct: 120 AEPKRRPSKL-----------------------EDDSQDGMPLVGRSAAMQEIYRVLARL 156 Query: 182 ATTELPILIQGETGTGKELLARAIHYNSPRRTSPLLIQNCGGMPDDLLQSELFGHKRGAF 241 T+L ++I GE+GTGKEL+ARA+H RR P + N +P DL++SELFGH++GAF Sbjct: 157 MQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAF 216 Query: 242 TGAISDRLGLFRAADGGTVFLDEISEVSPSFQVSLLRFLQEGEVKPLGSDKVEHCSVRII 301 TGA + G F A+GGT+FLDEI ++ Q LLR LQ+GE +G VRI+ Sbjct: 217 TGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIV 276 Query: 302 AASNRSLKDMVARREFRQDLYFRLKGFELEVPPLRERRDDIAPLSEFFAAKHADGMGRKI 361 AA+N+ LK + + FR+DLY+RL L +PPLR+R +DI L F + A+ G + Sbjct: 277 AATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDV 335 Query: 362 LGITASTIEKLSACDFPGNVRELENEIRRMVALAKDGEY--------------------- 400 +E + A +PGNVRELEN +RR+ AL Sbjct: 336 KRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKA 395 Query: 401 -ITTRNMSASLLASAAARSRSDGPRGFVPEGATLKDRVESLEKQIVGSALLRNHWNQSRT 459 + ++S S R +P + +E ++ +AL NQ + Sbjct: 396 AARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKA 455 Query: 460 AAELGLSRVGLSNKIKRYNLE 480 A LGL+R L KI+ + Sbjct: 456 ADLLGLNRNTLRKKIRELGVS 476
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 2e-17 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 3/138 (2%) Query: 586 RVLVVDDNPTNRLVATKMLKDFDIQTDTACDGAEAVTAASRFNYDLILMDVRMPEMDGFQ 645 +LV DD+ R V + L + A + + DL++ DV MP+ + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 646 ATRTIRARGERRSNVPIIAFTANAFMEDIRACREAGMNDFVVKPARKKALVEAILRVLPA 705 I+ + R ++P++ +A E G D++ KP L+ I R L Sbjct: 65 LLPRIK---KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 706 RTLAIETIASDAPPLAPV 723 + D+ P+ Sbjct: 122 PKRRPSKLEDDSQDGMPL 139
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 8e-15 Identities = 24/138 (17%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 2 RNELLVIEDADVHLSILRKIATQAGFNTTGVSSVDAASTILRTRHFDCVTLDLSLGERSG 61 +LV +D ++L + ++AG++ S+ + D V D+ + + + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 TEVLQRLAELKYRGPVLIISASENDRLDASVRIGNFLELNVCPPFSKPINLPLLRQTLKQ 121 ++L R+ + + PVL++SA + ++ E KP +L L + + Sbjct: 63 FDLLPRIKKARPDLPVLVMSA--QNTFMTAI---KASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 122 IASETDRQKLVRRQAGRG 139 +E R+ + Sbjct: 118 ALAEPKRRPSKLEDDSQD 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.6 bits (204), Expect = 1e-21 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 9 ILVVDDYATMIRIIRNLLKQLGFENVDDATDGSAALAKMQAKKYGLVISDWNMEPMTGYD 68 ILV DD A + ++ L + G++ V ++ + + A LV++D M +D Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 69 LLREVRASPELSKTPFIMITAESKTENVIAAKKAGVSNYIVKPFN 113 LL ++ P ++++A++ I A + G +Y+ KPF+ Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD 107
>FLAGELLIN#Flagellin signature. Length = 507 Score = 57.4 bits (138), Expect = 7e-11 Identities = 80/498 (16%), Positives = 155/498 (31%), Gaps = 7/498 (1%) Query: 25 LQSTAQLLATTQNNLSTGKKVNSALDNPTNFFTAQGLDNRASDISNLLDGIGNGVQVLQA 84 L + L++ LS+G ++NSA D+ A + ++ +G+ + Q Sbjct: 17 LNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQT 76 Query: 85 ANTGITSLQKLVDSAKSIANQVLQSAVGYSTKSTVTSAALTGATATSLIGASTTAVTGSA 144 + + + + ++ +Q+ G ++ S + S I + + Sbjct: 77 TEGALNEINNNLQRVRELS---VQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNG 133 Query: 145 VLNDNTSTAVAITGSTKLSGTPGTSSNDLASSITTGDTLVVNGTTFTFIAGTSSSGTNIG 204 V + + I T + D VNG + SS N+ Sbjct: 134 VKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVT 193 Query: 205 VGDTVTNLLSTIQSATGVTSSITAGAITLTPPAAGLTLSGTSLAKLGLSAVGNSLSGQTL 264 DT + + + +T P + + L Sbjct: 194 GYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAV-DLFKT 252 Query: 265 TIAATGGGTATSVTFGLGTGQVNSLNDLNAKLAANNLQATVASATGKISITTTNDAASST 324 T + G A ++ + G+ D + + ++TT + T Sbjct: 253 TKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK---VSTTINGEKVT 309 Query: 325 IGAIGGTAAASSQSFNGLTAAAPVADATAQSQRASLVAQYNNVLAQINTTAADASFNGIN 384 + TA A++ L ++ V + Q N + A +A Sbjct: 310 LTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESK 369 Query: 385 LLNGDTLKLTFNETGKSTLSITGVTFNTGGLGLSTLTSGTDFLDNNSANKVIKVLNTASS 444 + K TL+ + + G+STL + S + +++A S Sbjct: 370 ITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALS 429 Query: 445 TLRDEASTLGSNLSVVQVRQDFNKNLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAV 504 + S+LG+ + N + L + S + AD E +N Q Sbjct: 430 KVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGT 489 Query: 505 SALSLANQSQASVLQLLR 522 S L+ ANQ +VL LLR Sbjct: 490 SVLAQANQVPQNVLSLLR 507
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.0 bits (218), Expect = 4e-20 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 4/134 (2%) Query: 795 QTQSVLLVDDSPFFRNMLAPVLKSAGYKVRTAASAIEGLATLRSGHTFDIVVTDIEMPEM 854 ++L+ DD R +L L AGY VR ++A + +G D+VVTD+ MP+ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE 60 Query: 855 NGFEFAEAIRSDQNLNQLPVIAVSSLVSPAAIERGRQAGLYDYIAK-FDRPGLIAALKEQ 913 N F+ I+ + LPV+ +S+ + + + G YDY+ K FD LI + Sbjct: 61 NAFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 914 IEERARAEANRRAA 927 + E R + Sbjct: 119 LAEPKRRPSKLEDD 132
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 41.9 bits (98), Expect = 2e-05 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 25/157 (15%) Query: 717 EFGSVEDLRQLGDILSDLRQVKGVQSAQMLMLEAIVLRERADRGNLPV----SETEEILD 772 +FG++E + +L + +D+ + AQ L +L + D G + EI Sbjct: 880 DFGTIESVFELANRSNDIDTLYANSGAQGRDLLQTLLIDSHDAGYARTMIDATSANEITK 939 Query: 773 RSRLLLTNARDQIAKKPRNPSRDQLL----ASILTSYATTLRRQMQVRIEQGNLLAAQTI 828 + T + IA S Q L A IL S L R+ I+ Sbjct: 940 QLN-TATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHID---------- 988 Query: 829 ATPALAAAQRAQALQDQ-WHPFDAAALVYYRLAQAWQ 864 + A+R QAL+DQ + ++AA V Y+ A ++ Sbjct: 989 -----SFAKRLQALKDQRFASLESAAEVLYQFAPKYE 1020
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 38.0 bits (88), Expect = 5e-05 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 10/127 (7%) Query: 668 NLADLYRQRGQDGEGEAVLRTALVASPRDAALFYSLGLTLTRLRRPDDALNALARAAELE 727 +LA Q G+ + V + V D+ F LG + + D A+++ + A ++ Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 728 PERQRYVYVYGIALHSSGRREAAVSVL---KDALRAHPNDSQI-------LQALISFSRM 777 + R+ + L G A S L ++ + ++ L+A+ M Sbjct: 101 IKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLEAIKLKKEM 160 Query: 778 SGDATSA 784 + Sbjct: 161 EHECVDN 167
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.5 bits (84), Expect = 1e-05 Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 66 DDHLMMRNLAVLPAFQGRRLGHALIDFAEAEARRRNLPELRLYTNEKFPETMPFYKSRGF 125 + + ++ ++AV ++ + +G AL+ A A+ + L L T + FY F Sbjct: 87 NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 29.9 bits (67), Expect = 0.028 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Query: 40 TD--GSRQVTFTELERDANRFANYLVAKGLKPGEKIATV 76 TD GS ER A +YL++KG+ P +KI+ Sbjct: 261 TDRIGSDAYNQGLSERRAQSVVDYLISKGI-PADKISAR 298
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 0.001 Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 566 DLTLAAPQSSAAAGGDGKVRAALNGRVVAVLVKLGDRVAVGQPVITLEA 614 ++ A +G +++ N V ++VK G+ V G ++ L A Sbjct: 81 EIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTA 129
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.012 Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 22/170 (12%) Query: 255 KRQTREQLRTLLAEVN-HRSKNLLSLVQAIARQMTRRGRPL--DLERFLQRLQAIASNQD 311 QL L A++N H N L+ ++A+ + + R + L + R SN Sbjct: 156 SMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELM-RYSLRYSNAR 214 Query: 312 LLIQNDWRFIPLG---GLVRSQLGAFSDLVGNRIAIDGPEIELTPEAAQA--IGMAVHEL 366 + L +V S L S +R+ E ++ P M V L Sbjct: 215 Q--------VSLADELTVVDSYLQLASIQFEDRLQF---ENQINPAIMDVQVPPMLVQTL 263 Query: 367 ATNAAKYG-ALSNDDGHVTLRWVRDGDDLEMIWRESGGPAVSPPTHSGFG 415 N K+G A G + L+ +D + + E+ G T G Sbjct: 264 VENGIKHGIAQLPQGGKILLKGTKDNGTV-TLEVENTGSLALKNTKESTG 312
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.5 bits (89), Expect = 1e-05 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 4/145 (2%) Query: 40 ESTRLERAAPAAPSPSPTATSYLAATQAAATAPIKVTPAQAEPVPEPSAAPASAPAVTAQ 99 E + + +P + + I A+ + P P APA+ T Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEI----ARVDEAPVPPPAPATPSETTET 1039 Query: 100 DAATENAPAQAQEKTAEKAPDPDLKAREAERKRAAEQRRAERHRQVAERRRQRREQDLRA 159 A ++ EK + A + + RE ++ + + + +VA+ + +E Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 160 VEQAVRENSMPRAYAAQPVDMDAPR 184 ++ +A + P+ Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPK 1124
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 51.7 bits (124), Expect = 2e-09 Identities = 69/328 (21%), Positives = 110/328 (33%), Gaps = 16/328 (4%) Query: 65 GTLCDRVGPRPVVLIGSILLAASLALASLASSLLMFQLLFGLLVGGATAAIFAPVMATVT 124 G L DR G RPV+L+ A A+ + A L + L G +V G T A A A + Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWV--LYIGRIVAGITGATGAVAGAYIA 121 Query: 125 GWFDTH-RSLAVSLVSAGMGVAPMTMSPLAAWLVSHWDWRTSMQCIAAVVAAIMIPVSLL 183 D R+ +SA G M P+ L+ + AA+ + L Sbjct: 122 DITDGDERARHFGFMSACFGFG-MVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL 180 Query: 184 VRRPPEVERDTAAAPQHGPG----LPEMTRPTALRSPQFTILLATNFFCCATHSGPIIHT 239 + + ER P A F I+ A Sbjct: 181 LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR 240 Query: 240 VSYAVSCGIPLMAAVTIYSVEGLAGLFGRIAFGLLGDRFGAKRILVLGLLAQAFGALAYV 299 + +++ + L L + G + R G +R L+LG++A G + Sbjct: 241 FHWD-----ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLA 295 Query: 300 FAQDLAAFYAVAAVFGFIYAGTMPLYAAIARENFPQAMMGTVMGGIAMAGSLGMATGPLA 359 FA + + + G MP A+ + G + G +A SL GPL Sbjct: 296 FATRGWMAFPIMVLLASGGIG-MPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLL 354 Query: 360 GGLIYDSFASYTWLYVGSWLMGLGAVLI 387 IY + + + W+ G L+ Sbjct: 355 FTAIYAASITTWNGWA--WIAGAALYLL 380
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 27.7 bits (61), Expect = 0.039 Identities = 34/149 (22%), Positives = 50/149 (33%), Gaps = 15/149 (10%) Query: 23 MAQTTGATKPAPAAAATEAGPDQPPPGGCMPIGITAAGDVVFPFACKDLIDLHRGKGQQS 82 A PA A A P PGG P G D + +D+ + + Sbjct: 255 RATIRRGDAPAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYG------VDVSGSSVELA 308 Query: 83 SATPEA-GQGAPAHDA----ATAAAGDAVKTTGSVAVQPQSR---PSAEGDGIKAAEGAA 134 + EA GA T + G G+V +R P A I GA Sbjct: 309 QSIVEAPELGAAIRVGRGARVTVSGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAH 368 Query: 135 APAQPAVREKDAPEANRAEPSGSRASRGD 163 A + A+ + PE + +G ++GD Sbjct: 369 AQGK-ALLYRVLPEPVKLTLTGGADAQGD 396
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 27.9 bits (62), Expect = 0.041 Identities = 6/16 (37%), Positives = 10/16 (62%) Query: 98 FDGDYPTLFKRLQEFL 113 FD DY + K ++ +L Sbjct: 225 FDDDYDKVVKLIKGWL 240
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 33.1 bits (75), Expect = 0.002 Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 22/147 (14%) Query: 180 ILNEDIRDRTSRASDTTKFLGREVERLQAESAALESKIAQAKETQGTPSAG-AIDPLAQM 238 I+NE +R SR T+ +QAE L A+ K + +A A Q Sbjct: 97 IVNEALRHNASRTPSATELAHANNAAMQAEDERLRLAKAEEKARKEAEAAEKAFQEAEQR 156 Query: 239 RAEYAQKSAIYSDKHPMMKALK----------RQIEAAEKTLAPSNSNGVNLDA------ 282 R E ++ A + + +A + + +E A+K L+ + S V +D Sbjct: 157 RKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSAAQSEVVKMDGEIKTLN 216 Query: 283 -----LQSQREAIQKNLENASAKYAAA 304 R+A K L + A A Sbjct: 217 SRLSSSIHARDAEMKTLAGKRNELAQA 243 Score = 29.3 bits (65), Expect = 0.031 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 36/176 (20%) Query: 181 LNEDIRDRTSRASDTTKFLGREVERLQAESAALESKI---------AQAKETQGTPSAGA 231 L E R + S+ + VE Q + +A +S++ ++ + + A Sbjct: 173 LAEAEEKRLAALSE----EAKAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDA 228 Query: 232 I-DPLAQMRAEYAQKSAIYSD-----------------KHPMMKALKRQIEAAEKTLAPS 273 LA R E AQ SA Y + P +A +R++ A + Sbjct: 229 EMKTLAGKRNELAQASAKYKELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQ 288 Query: 274 N---SNGVNLDALQSQREAIQKNLENASAKYAA--AQLGEALEKNQQSEKFEVLEQ 324 ++ ++ + + IQK + S A A++ EA E ++++ + Q Sbjct: 289 KQVTASETRINRINADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQ 344
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 29.6 bits (66), Expect = 0.008 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 129 GNSGSGIFDADAQCLLGIVSRKISQSFQPPAGSGQQPVIFDLAK 172 GNSGS +F+ + ++GI + F + + K Sbjct: 235 GNSGSPVFNEKNE-VIGIHWGGVPNEF--NGAVFINENVRNFLK 275
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 85.2 bits (211), Expect = 7e-21 Identities = 68/308 (22%), Positives = 110/308 (35%), Gaps = 63/308 (20%) Query: 1 MKILITGNLGYVGPAVIKYLRQQRPDATLHGFD--NAYFAHCLTGAPRLPERDLDEQFYG 58 MK L+TG G++G V K L + + G D N Y+ L + L+ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLE-AGHQVV-GIDNLNDYYD------VSLKQARLELLAQP 52 Query: 59 DVRNVGLDLRSYDAVVQLAAISNDPMGNQFEAVT------------------FDINQGST 100 + +DL + + L A FE V D N Sbjct: 53 GFQFHKIDLADREGMTDLFAS------GHFERVFISPHRLAVRYSLENPHAYADSNLTGF 106 Query: 101 VSIAKAAAAAGVKNFVFASSCSVYGVAEGAPRKESDPLN-PITAYAKSKIGAER------ 153 ++I + +++ ++ASS SVYG+ P D ++ P++ YA +K E Sbjct: 107 LNILEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYS 166 Query: 154 ELASIDTNMVVTSLRFATACGMSDRLRLDLVLNDFVACALSQGKISVLSDGTPWRPLIDV 213 L + T LRF T G R D+ L F L I V + G R + Sbjct: 167 HLYGLPA----TGLRFFTVYG--PWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYI 220 Query: 214 ADMARAI------------DWAIDRGAQTGGR--YLAVNVGSDDRNYQVKELAHAVAQSV 259 D+A AI W ++ G Y N+G+ ++ + A+ ++ Sbjct: 221 DDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSP-VELMDYIQALEDAL 279 Query: 260 PGTDVSIN 267 G + N Sbjct: 280 -GIEAKKN 286
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 77.4 bits (190), Expect = 5e-19 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 4/141 (2%) Query: 27 GAHPDLLALALDVTRESEAVAAAQAAIDR-FGRIDVLLNNAGFGLMGAVEETSQEEIEAV 85 H + A DV R+S A+ A I+R G ID+L+N AG G + S EE EA Sbjct: 56 ARHAE--AFPADV-RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEAT 112 Query: 86 FRTNVFGLLAVTRAILPHMRKARSGRILNISSIGGYRGSAGFGVYGATKFAVEALSEAMR 145 F N G+ +R++ +M RSG I+ + S Y ++K A ++ + Sbjct: 113 FSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLG 172 Query: 146 AELEPLGIHVTAIEPGYFRTD 166 EL I + PG TD Sbjct: 173 LELAEYNIRCNIVSPGSTETD 193
>PF07675#Cleaved Adhesin Length = 1358 Score = 35.1 bits (80), Expect = 0.002 Identities = 48/196 (24%), Positives = 74/196 (37%), Gaps = 32/196 (16%) Query: 112 GSGIAHRPATALSDTLSSRDPIAQALWQA---QRERTLASVKRIRAGTPRPRLSLHDPWA 168 G ++P + L+ T + + W A ++ VKRI G +++ Sbjct: 328 GEPSPYQPVSNLTATAQGQKVTLK--WDAPSAKKAEGSREVKRIGDGL---FVTIEPAND 382 Query: 169 VRALVIVLLVATYFAAGDERRIRIASAFDWN--GVMTPVTIRVDAWIKPPLYTAKPPIIL 226 VRA +++A GD + D N G + P T PL+T L Sbjct: 383 VRANEAKVVLAADNVWGDNTGYQFLLDADHNTFGSVIPAT--------GPLFTGTASSNL 434 Query: 227 SAANKEGAVPAN-GPIVVPAGSTLIIRSSGGNLDVVTSGGV-------AEAAPGEIA-AG 277 +AN E PAN P+V + G +VV GGV E A G++ AG Sbjct: 435 YSANFEYLTPANADPVVTTQNIIVT-----GQGEVVIPGGVYDYCITNPEPASGKMWIAG 489 Query: 278 EAAPKGATERHFTIKA 293 + + A F +A Sbjct: 490 DGGNQPARYDDFAFEA 505
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 28.6 bits (63), Expect = 0.031 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Query: 189 RQVKAAGYALSNQ--ENAPGLCVLAAPVIDRDGVPLAAIS 226 + +KA GY ++ E APG V PV DR+G P+ ++ Sbjct: 254 KYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVA 293
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.9 bits (194), Expect = 2e-19 Identities = 68/261 (26%), Positives = 111/261 (42%), Gaps = 11/261 (4%) Query: 4 GIKGRRAIVCASSKGLGRACAIALANEGVHVTITARGAEALAK--TAADIRAANPDITVT 61 GI+G+ A + +++G+G A A LA++G H+ E L K ++ A + + Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 62 EVAGDITTPEGRAAVLKACPDPDILINNAGGPPPGDFRNWTRDDWIKALDANMLTPIELI 121 +V E A + + DIL+N AG PG + + ++W N Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 122 KATVDGMMARKFGRIVNITSAAVKAPIDILGLSNGARAGLTGFVAGLSRKTVINNVTINA 181 ++ MM R+ G IV + S P + ++A F L + N+ N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 182 LLPGPFETDRLIGTAKIESERRGIPPEQIL---AERAKTN-PAGRFGDPEEFGLACAFLC 237 + PG ETD + ++ G EQ++ E KT P + P + A FL Sbjct: 185 VSPGSTETDM---QWSLWADENG--AEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 238 GAKAGYITGQNILLDGGAFPG 258 +AG+IT N+ +DGGA G Sbjct: 240 SGQAGHITMHNLCVDGGATLG 260
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 111 bits (279), Expect = 8e-32 Identities = 80/252 (31%), Positives = 131/252 (51%), Gaps = 10/252 (3%) Query: 10 EVILITGASQGLGRQFARVLSAHGAAVALAARQTGKLKALEDEIKAKGGRAVAVEMDVTS 69 ++ ITGA+QG+G AR L++ GA +A KL+ + +KA+ A A DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 70 AASIAKGLDAAESALGPITVLINNAGIAVEKLAVEQSEADWDAVIGANLKGAYFAATEVA 129 +A+I + E +GPI +L+N AG+ L S+ +W+A N G + A+ V+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 130 RRMIARKGGGNIINIASVLGFSVVKFIAPYAISKAGVVQATKALALELAASDIRVNALAP 189 + M+ R+ G+I+ + S +A YA SKA V TK L LELA +IR N ++P Sbjct: 129 KYMMDRR-SGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 190 GYIDTDINHDVWETPAGEKLIKR---------IPQRRVGRESDLDGAIMLLASPASRYMT 240 G +TD+ +W G + + + IP +++ + SD+ A++ L S + ++T Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 241 GSVVTVDGGFLL 252 + VDGG L Sbjct: 248 MHNLCVDGGATL 259
>PF07675#Cleaved Adhesin Length = 1358 Score = 26.6 bits (58), Expect = 0.021 Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 77 YFDANFEFGSPDPADPTVTQRAITL 101 + ANFE+ +P ADP VT + I + Sbjct: 434 LYSANFEYLTPANADPVVTTQNIIV 458
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.012 Identities = 21/72 (29%), Positives = 31/72 (43%) Query: 331 QHLANYQRKERKPLDTVELNEQIVDRLFQIEAIKRVAERFEGKHRKALVVQATGTGKTRV 390 + LA +R+ K D + +V R ++ I RV R ++ +GTGK V Sbjct: 117 RALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV 176 Query: 391 AIALTDLLIRAG 402 A AL D R Sbjct: 177 ARALHDYGKRRN 188
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 0.002 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 20/188 (10%) Query: 2 AAVEKARHAVDQLVAAKLREGRQAIAAEEAIKAKAAA-------ADDLQLKQKEVS---- 50 + + A A E K ++ A + + +EV+ Sbjct: 1015 EEIARVDEAPVPPPAPAT-PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAK 1073 Query: 51 -----DLQVL-LAQRDEKLKEAQKLQAEVMRKQREIDEAKRELDLTIEKRVDASIAEIRQ 104 + Q +AQ + KE Q + + + ++AK E + T E S +Q Sbjct: 1074 SNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQ 1133 Query: 105 KAKAEAEEGERLKVAEKDNLISSLQRQIEDLKRKA-EQGSQQLQGEVLELELESTLRASF 163 ++E + + E D ++ + Q + EQ +++ V + EST + Sbjct: 1134 -EQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG 1192 Query: 164 PHDTIEPV 171 P Sbjct: 1193 NSVVENPE 1200
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 1e-20 Identities = 30/117 (25%), Positives = 57/117 (48%) Query: 3 KILLAEDDNDMRRFLVKALENAGFQVSPHDNGMSAYQRLREEPFEMLLTDIVMPEMDGIE 62 IL+A+DD +R L +AL AG+ V N + ++ + ++++TD+VMP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 LARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLSKPVHLRELVSEVNKMLAA 119 L R + PD+ ++ ++ + L KP L EL+ + + LA Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 27.9 bits (62), Expect = 0.038 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 10/142 (7%) Query: 37 ARKAEVRRQFDTVRDFEAKANAELA---AVEAERAGIAAEREAALKAAAAQ-AQEMAEAR 92 R + R + + E K E E E + + + Q Q+ Sbjct: 151 TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLD 210 Query: 93 RAQAERD-AQALMDSTRKTLASERESALDEARRLALDLGADLAQRLLAEVPMQYRAEAWI 151 + +AER A ++ E+ LD+ L A +L + A Sbjct: 211 KKRAERLTVLARINRYENLSRVEKSR-LDDFSSLL-HKQAIAKHAVLEQENKYVEAVN-- 266 Query: 152 ERIEQHLKAMPQAERDALVRQL 173 + + + Q E + L + Sbjct: 267 -ELRVYKSQLEQIESEILSAKE 287
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.5 bits (74), Expect = 0.009 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 7/73 (9%) Query: 69 RLKKLGPNL-------VARERKPTIPEEIWNRARNPLNALLLTLAVVSFLLGDVRAAVVI 121 +L +L P + P + I + A++L V+ L ++RA ++ Sbjct: 309 KLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIP 368 Query: 122 AAMVVLAITTAFI 134 V + + F Sbjct: 369 TIAVPVVLLGTFA 381
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 24.0 bits (52), Expect = 0.043 Identities = 11/26 (42%), Positives = 13/26 (50%) Query: 32 EKFAGSGLTRWHEGAFLLALGGTLLI 57 EK A +G G F A GGTL + Sbjct: 212 EKGAFTGAQTRSTGRFEQAEGGTLFL 237
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.031 Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 14/191 (7%) Query: 42 LLLEREAS----LRHDKRLATRLRYAKLRQQA-CVEDIDYRTPRGLDRPLFAKLVEGRWI 96 LL R A+ LR LA + + +LR+Q V +R G + ++ Sbjct: 447 LLKPRRAALIEALRSAPALAGCVAFDELREQPVAVRAFPWRKAPGPLEDADVLRL-ADYV 505 Query: 97 DDHVNLLICGPAGVGKSWLASALGHK--ACRDN-RSVLYQRVPRL---FDDLALARGDGR 150 + ++ +A ++ RD ++ + VPRL + D Sbjct: 506 ETTYGTGEASAQTTEQAINVAADMNRVHPFRDWVKAQQWDEVPRLEKWLVHVLGKTPDDY 565 Query: 151 HPRLLRGLGRVDLLILDDWGLEPLDAGARHDLLEILEDRYGHRSTIVTSQLPVDQWHL-- 208 PR LR L V IL ++ G + D +LE G + + + L + Sbjct: 566 KPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDT 625 Query: 209 LIGDPTYADAV 219 T D+ Sbjct: 626 HFDIGTGKDSY 636
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 55.3 bits (133), Expect = 3e-10 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 19/176 (10%) Query: 216 LFRTINAAI----SPALASEFGLDAAETGLLASVYFLVFGVAQIPVGIFLDRFGPRRVQG 271 F +N + P +A++F A T + + + L F + G D+ G +R Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR--- 80 Query: 272 VLLVIAAGGATLFG--------NASSLPELLFARGMIGLGVAGSLMAGLKSIVTWFPRER 323 LL+ G + S L+ AR + G G A + + + P+E Sbjct: 81 -LLLF---GIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN 136 Query: 324 VALANGWMIMLGSLGAVTATAPTDWLLNYVGWRSLFEILTIGTFAVSGLIYMVVPE 379 A G + + ++G A + +Y+ W L I I V L+ ++ E Sbjct: 137 RGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKE 192
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 51.4 bits (123), Expect = 3e-10 Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 12/218 (5%) Query: 19 YQKAAQVWD-ERIGSARVQARNWRLMAFGCLLLSGGLAAALVWESTQGTITPWVVQVD-H 76 Y + A W+ +++ +A + ++A L+ A+ + T+ P+V+ VD + Sbjct: 13 YFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRN 72 Query: 77 LGQAQAVAPASSSYQ-PTDPQIAFH-LARFIEDVRGLPTDAIVLRQDWLRAYDFTTDRGA 134 G+A A D + + LA ++ G A + + + Sbjct: 73 TGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGW--IAAAREEYFDAVMVMSARPEQ 130 Query: 135 AALNDYARTN---DPFVKLG-NTQVAVEISSVIRASPQSFRVAWTERRYDSGQLAATERW 190 + + +T+ P L T V VEI V +V +T+ + Sbjct: 131 DRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSN-STKTDA 189 Query: 191 TAILSVIIETPRDTDRLR-KNPLGVYVNSINWSKELGQ 227 A + ++ + R KNPLG V S E+ Q Sbjct: 190 VATIKYKVDGTPSKEVDRFKNPLGYQVESYRADVEVPQ 227
>PF07675#Cleaved Adhesin Length = 1358 Score = 30.4 bits (68), Expect = 0.015 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 3 ASTRPTVSEAKDFIRDQIFLRIEPLVAVRISQQDLMVSVNKLVAEIATGRKILLNQD 59 ++ + S I D +F+ IEP VR ++ ++++ + V TG + LL+ D Sbjct: 356 SAKKAEGSREVKRIGDGLFVTIEPANDVRANEAKVVLAADN-VWGDNTGYQFLLDAD 411
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 34.0 bits (78), Expect = 7e-04 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 7/120 (5%) Query: 164 ARMLRAGLPITVAMRTVAVDGSPP-VSRVFGLIADELRIGVPLEEALDTNSREIGLPDFR 222 A ++ A +P+ A+ VA P +S++ + ++ G L +A+ F Sbjct: 78 ATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFP-----GSFE 132 Query: 223 FFAVAMTLQFATGGNLTATLESLSDIIRKRRAARLKA-KAATGEIRLTAYTLGAIPILTT 281 AM T G+L A L L+D +R+ R + +A LT + + IL + Sbjct: 133 RLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVAIAVVSILLS 192
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 150 bits (380), Expect = 3e-41 Identities = 72/277 (25%), Positives = 118/277 (42%), Gaps = 9/277 (3%) Query: 172 VINAMRVAASQQVMLRVRFIEVSRQAEREIGVNWFGANASGTRGINTGTGAISQAGPTAT 231 VI + + QV++ EV +G+ W NA T+ N+G + Sbjct: 336 VIAQLDIRR-PQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAI----- 389 Query: 232 SAGVPVFNTIGTFAGSTLSAPFGVGLFNLANKGGSVDVLITALEKKGLARRLAEPDLVAL 291 AG +N GT + S SA G+ +L+TAL LA P +V L Sbjct: 390 -AGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTL 448 Query: 292 SGDTASFLAGGEYPVPS-VQSSSGTTPVITVLYKPFGVQLTFVPTVLASGIINLRLTPSV 350 A+F G E PV + Q++SG TV K G++L P + + L + V Sbjct: 449 DNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEV 508 Query: 351 SELDYTNAVAISGTLVPALSKREARTAIELRDGQSFAIAGLLQSDNLRDVGQLPWLGSVP 410 S + A + S L + R A+ + G++ + GLL ++P LG +P Sbjct: 509 SSVAD-AASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIP 567 Query: 411 VLGTLFRSTSYQQKETDLVVIVTPHLVAPAAPGQALA 447 V+G LFRSTS + + +L++ + P ++ + + Sbjct: 568 VIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQAS 604
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 44.5 bits (105), Expect = 8e-09 Identities = 21/93 (22%), Positives = 37/93 (39%) Query: 5 YFNRGIYGTAEKYFQSAVEKAPKDVSAWIGLAASYDRLGRFDLADHAYGQAIKLGGETTQ 64 + G Y A K FQ+ D ++GL A +G++DLA H+Y + + + Sbjct: 46 QYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPR 105 Query: 65 ILNNLGYSYMLRGKLTAARTKFMEAYRREPDNP 97 + + +G+L A + A D Sbjct: 106 FPFHAAECLLQKGELAEAESGLFLAQELIADKT 138
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 27.8 bits (62), Expect = 0.025 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 7/80 (8%) Query: 18 VLGISAAIDLKDRVIPNELVVAIAVIGFAQGLALRPGLVWFSLLVAIIVFFGLWIVAHVK 77 VL IDL ++P++L + + G L + +++ A+ + LW + Sbjct: 143 VLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYLVLWSLYWAF 202 Query: 78 I-------IGGGDLKLISAV 90 +G GD KL++A+ Sbjct: 203 KLLTGKEGMGYGDFKLLAAL 222
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.8 bits (137), Expect = 8e-13 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 2/109 (1%) Query: 2 VVDDSSVGRKIARRILEELEFRIIEAKDGEKAVEARKSDLPDVVLLDWDTQVTDGCELFG 61 V DD + R + + L + + + + D+V+ D + +L Sbjct: 8 VADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLP 67 Query: 62 NLLRLSGGDQPIVVICTTESNIDHISDALHAGSDEYVVKPFNRDAVVAR 110 + + D P V++ + ++ A G+ +Y+ KPF+ ++ Sbjct: 68 RIKKA-RPDLP-VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 32.9 bits (75), Expect = 0.003 Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 9/152 (5%) Query: 453 IIETVSSASNDLESSASTLSSTATRSQQLATAVAAASEEASTNVQSVASAAEELT---SS 509 + +S + L + ++S+ +Q L + + S +QS+A AEE+T S Sbjct: 3 TLHNLSYGNTPLHNERPEIASSQIVNQTLGQFRGESVQIVSGTLQSIADMAEEVTFVFSE 62 Query: 510 VHEIS---RQVQESARIASGAVEQARTTNERVNELSKAAARIGDVVELINTIAGQTNLLA 566 E+S R++ +S S EQ +V EL + + +++ L++ + +L Sbjct: 63 RKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELEQ-KQNVSELLSLLS-NSPNISLSQ 120 Query: 567 LNATIEAARAGEAGRGFAVVASEVKALAEQTA 598 L A +E + E F ++ AL + Sbjct: 121 LKAYLEGK-SEEPSEQFKMLCGLRDALKGRPE 151
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 24.8 bits (54), Expect = 0.041 Identities = 13/37 (35%), Positives = 14/37 (37%) Query: 15 KYHVVFIPKYRRKVLYGELRRHLGDVFRRLALQKECR 51 + F Y V GE HL V RLA E R Sbjct: 126 CFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQR 162
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.7 bits (111), Expect = 9e-08 Identities = 33/242 (13%), Positives = 80/242 (33%), Gaps = 45/242 (18%) Query: 140 DLLSAASSLIATSGVLQLTTRALNRLKTLYESRAVAQ---KDVEQAISDQQTAEGAHKAA 196 + L+ + + + ++ L+ +L +A+A+ + E + +K+ Sbjct: 215 ERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQ 274 Query: 197 RDAVR------------IFGKTDAEIDAIIKERRADST---------------LVVKSPI 229 + + + EI +++ + V+++P+ Sbjct: 275 LEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPV 334 Query: 230 NGRITARNA-APGLFVQPGSAPAPFSVADTSTMWMIANVAESDVSAIHVGQHVKVSVMSY 288 + ++ G V V + T+ + A V D+ I+VGQ+ + V ++ Sbjct: 335 SVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAF 393 Query: 289 PGKIF---EGHISTISSN--VDPNTH------RMLVRSEIEDPDH--ELRSGMFARFSIV 335 P + G + I+ + D + + + + L SGM I Sbjct: 394 PYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIK 453 Query: 336 IG 337 G Sbjct: 454 TG 455 Score = 34.0 bits (78), Expect = 0.001 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 21/124 (16%) Query: 114 GRILETFAKVGDEVKKGQVLFTIDSPDLLSAASSLIATSGVLQLTTRALNRLKTLYES-- 171 + E K G+ V+KG VL + L + A +L S +LQ R + L S Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLT--ALGAEADTLKTQSSLLQARLEQT-RYQILSRSIE 161 Query: 172 ---------------RAVAQKDVEQAISDQQTAEGAHKAARDAVRI-FGKTDAEIDAIIK 215 + V++++V + S + + + + K AE ++ Sbjct: 162 LNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLA 221 Query: 216 ERRA 219 Sbjct: 222 RINR 225
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 562 bits (1449), Expect = 0.0 Identities = 218/1082 (20%), Positives = 412/1082 (38%), Gaps = 87/1082 (8%) Query: 8 FGLTRRAIILLGVLVFICGGLIAFRNLNIEAYPNPAPVILEITAQAPGLSAEEMERYYTI 67 F + R + ++ + G +A L + YP AP + ++A PG A+ ++ T Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63 Query: 68 PMEVGLAVTPGVDVIRSTSF-YGLSFVRVTFKYGVEFYFAYTQAALSLQQ-RVNLPNNTQ 125 +E + + + STS G + +TF+ G + A Q LQ LP Q Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123 Query: 126 PNIQQSSQAGEILRYQLA---GPPHFGLTNLRTVQDWIVQRRLLTVPGVVQVNSWGGTTK 182 ++ P ++ V+ L + GV V +G Sbjct: 124 QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ-Y 182 Query: 183 QYDVEVDLHKLDAYNLTLQQVTTALSNSNINVGGREI-----AVGQQ-SVNIRGVGLFDS 236 + +D L+ Y LT V L N + ++ GQQ + +I F + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 237 GGEKDLTQGYKVSDIENVVL-TQMNGVPVQVKDVAKVSVGFVPRLGIAGRDSNDDVVMAI 295 + V L +G V++KDVA+V +G IA + + I Sbjct: 243 -----------PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291 Query: 296 VVMGRTYHTNEVLPRVEAEIAKMNSDGTLPPGVKLVPFYDRGTLISVTTRTVLHNLIFGC 355 + + + ++A++A++ P G+K++ YD + ++ V+ L Sbjct: 292 KLATGA-NALDTAKAIKAKLAELQP--FFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAI 348 Query: 356 ALVFLIQWLFLGDLRSAIIVGVNIPFALFFSVIVLVLLGQDANLLSVG--AVDFGIIVDS 413 LVFL+ +LFL ++R+ +I + +P L + +L G N L++ + G++VD Sbjct: 349 MLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDD 408 Query: 414 AVILVENIFRNFQASDKHKQETLGYLSEGQWGPDPTRPKPGSPNLWTDRLRLILASALQV 473 A+++VEN+ R + E + P S Q+ Sbjct: 409 AIVVVENVER--------------VMMEDKLPP----------------KEATEKSMSQI 438 Query: 474 DKAVFFSAAITVAAFVPLFTMQGVEGQIFNPMARTYGYALVGALISTFTISPVLGSFLL- 532 A+ A + A F+P+ G G I+ + T A+ +++ ++P L + LL Sbjct: 439 QGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK 498 Query: 533 ---PEHVTETETIVVRALRAV------YAPALRWALGHRKLVASLGLAMLGVTGLLMMRL 583 EH Y ++ LG + ++ +L +RL Sbjct: 499 PVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRL 558 Query: 584 GSEFLPHLEEGNLWIRATMPPTIGLMSGEPVAHKAREILLRH--PEITTVVTQHGRPDDG 641 S FLP ++G +P + V + + L++ + +V T +G G Sbjct: 559 PSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSG 618 Query: 642 SDAAGFNNLELFAPLKPFDQWP-AGLTKDKLTKQLQQEFADEAPGVVFNFSQYIQDNFEE 700 N F LKP+++ + + + + + E G V F+ Sbjct: 619 Q---AQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGT 675 Query: 701 QLSGVKGANSAKIVGPDLVTLEELARQVRHEMAQVRGIEDLDVF--WVRGQPNLNIKVDR 758 + G L + Q+ AQ + V + ++VD+ Sbjct: 676 --ATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA-SLVSVRPNGLEDTAQFKLEVDQ 732 Query: 759 ERAARYGLNTGDVNTLVQAALGGAHATALLEADRQFNVVVRLPAEYRESLEAVRNIKVGI 818 E+A G++ D+N + ALGG + ++ R + V+ A++R E V + V Sbjct: 733 EKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYV-- 790 Query: 819 NTPAAANAYIPLSELADITLDTGSSYIYHESRERYIPVKFSVRDRDLGGAVAEAQERIAE 878 +A +P S GS + + + ++ G E +A Sbjct: 791 --RSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLAS 848 Query: 879 NVKLPPGYRVLWAGEFESLQLAKKRLEVIVPISLAMILVLLYGLFNSLRDSLLALAGIPF 938 KLP G W G +L+ + +V IS ++ + L L+ S + + +P Sbjct: 849 --KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPL 906 Query: 939 AVAGGIIALYVTGLDFSISAAIGFVSLFGVSVMDGILMITYYNQARQGVADSV-EAMFQA 997 + G ++A + + +G ++ G+S + IL++ + + V EA A Sbjct: 907 GIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMA 966 Query: 998 STQRMRPMLMTAMSACIGLFPAALSEGIGAQVQRPLATVVVGGMLIGPIMLLVVVPALRV 1057 R+RP+LMT+++ +G+ P A+S G G+ Q + V+GGM+ ++ + VP V Sbjct: 967 VRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFV 1026 Query: 1058 ML 1059 ++ Sbjct: 1027 VI 1028 Score = 71.8 bits (176), Expect = 1e-14 Identities = 65/350 (18%), Positives = 137/350 (39%), Gaps = 21/350 (6%) Query: 724 LARQVRHEMAQVRGIEDLDVFWVRGQPNLNIKVDRERAARYGLNTGDVNTLVQAAL---- 779 +A V+ ++++ G+ D+ +F Q + I +D + +Y L DV ++ Sbjct: 158 VASNVKDTLSRLNGVGDVQLF--GAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIA 215 Query: 780 GGAHATALLEADRQFNVVVRLPAEYRESLEAVRNIKVGINTPAAANAYIPLSELADITLD 839 G +Q N + ++ + E + + +N+ + + L ++A + L Sbjct: 216 AGQLGGTPALPGQQLNASIIAQTRFK-NPEEFGKVTLRVNSDGSV---VRLKDVARVELG 271 Query: 840 TGSSYIYHESRERYIPVKFSVRDRDLGGAVAEAQ---ERIAE-NVKLPPGYRVLWAGEFE 895 G +Y ++ A+ A+ ++AE P G +VL+ ++ Sbjct: 272 -GENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYP--YD 328 Query: 896 SLQLAKKRLE-VIVPISLAMILVLL--YGLFNSLRDSLLALAGIPFAVAGGIIALYVTGL 952 + + + V+ + A++LV L Y ++R +L+ +P + G L G Sbjct: 329 TTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGY 388 Query: 953 DFSISAAIGFVSLFGVSVMDGILMI-TYYNQARQGVADSVEAMFQASTQRMRPMLMTAMS 1011 + G V G+ V D I+++ + EA ++ +Q ++ AM Sbjct: 389 SINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMV 448 Query: 1012 ACIGLFPAALSEGIGAQVQRPLATVVVGGMLIGPIMLLVVVPALRVMLLG 1061 P A G + R + +V M + ++ L++ PAL LL Sbjct: 449 LSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK 498
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 3e-18 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 7 KILCIEDDRETAALIVEELTERGFDVTLAYDGGEGFAAIFRTMPDLVLCDINMRVMSGFE 66 IL +DD ++ + L+ G+DV + + + I DLV+ D+ M + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 67 VLEHLTKIAPRFNNMPFIFLTALTDRRNELKGRQLGADDYVTKPIDFDILVSIINARLAH 126 +L + K P +P + ++A +K + GA DY+ KP D L+ II LA Sbjct: 65 LLPRIKKARPD---LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 127 VAR 129 R Sbjct: 122 PKR 124
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 31.4 bits (71), Expect = 0.009 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 12/96 (12%) Query: 80 IYATAGLAYSQGRLTEDPFDPATQKKIGFRAGWVAGAGVEAPVDGNWTARIEYLY-SNFG 138 IY G + D K V GVE + R+EY + +N G Sbjct: 114 IYTRLGGMVWRA----DTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIG 169 Query: 139 SLNVMLPSGTSYGSTFDLHTVRLGLNRKLGGSAKEP 174 + + G+ D + LG++ + G P Sbjct: 170 DAH-------TIGTRPDNGMLSLGVSYRFGQGEAAP 198
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.7 bits (74), Expect = 0.002 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 3/88 (3%) Query: 19 LQAEREARLRAEAVAASARAELSDNEVLIAHLELRI---EKLKRELHGQRSERTARLIEQ 75 L A REA+ + E A ++L+ E L LE EK K EL + L E+ Sbjct: 388 LDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEK 447 Query: 76 LELELEELATTASEDELAAQVAAAKTQN 103 L + EELA + +Q AK N Sbjct: 448 LAKQAEELAKLRAGKASDSQTPDAKPGN 475
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 92.3 bits (229), Expect = 2e-27 Identities = 35/76 (46%), Positives = 55/76 (72%) Query: 36 ADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEV 95 D++ + D+PV+++ LGR++M + ELL+L G+V+ LD GE +DI +N L+A+GEV Sbjct: 52 QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111 Query: 96 VLVEDKLGVTMTEIIK 111 V+V DK GV +T+II Sbjct: 112 VVVADKYGVRITDIIT 127
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 302 bits (776), Expect = e-103 Identities = 111/340 (32%), Positives = 196/340 (57%), Gaps = 2/340 (0%) Query: 24 RQAQREKTEPLSGPRRAAVMMLALGEQYGGKIWQQLDDDEVRELSLAMSTLGTVEADVVE 83 ++ + L+G ++AA++++++G + K+++ L +E+ L+ ++ L T+ +++ + Sbjct: 5 KEKEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKD 64 Query: 84 DLMLEFVSRMSASGALM-GNFDATERLLQQYLPPERVNGIMDEIRGPAGRNMWEKLSNVQ 142 +++LEF M A + G D LL++ L ++ I++ + +E + Sbjct: 65 NVLLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRAD 124 Query: 143 EEVLANYLKNEYPQTIAVVLSKLKPEHAARVLAILPEDMALDVIGRMLRMEAVQKEVIER 202 + N+++ E+PQTIA++LS L P+ A+ +L+ LP ++ +V R+ M+ EV+ Sbjct: 125 PANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVRE 184 Query: 203 VEQTLRVEFMSNLSQTRR-RDAHEVMAEIFNNFDRQTETRFITSLEEENRESAERIKALM 261 VE+ L + S S+ + + EI N DR+TE I SLEEE+ E AE IK M Sbjct: 185 VERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKM 244 Query: 262 FTFDDLIKLDSASAQTLLRNVDKDKLGVALKSANEEVRNFFFGNMSSRAAKMLQDDMAAM 321 F F+D++ LD S Q +LR +D +L ALKS + V+ F NMS RAA ML++DM + Sbjct: 245 FVFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFL 304 Query: 322 GPVRLRDVDEAQALLVNLAKDLAAKGEIMLSKNRADDELV 361 GP R +DV+E+Q +V+L + L +GEI++S+ +D LV Sbjct: 305 GPTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVLV 344
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 340 bits (873), Expect = e-113 Identities = 169/557 (30%), Positives = 262/557 (47%), Gaps = 47/557 (8%) Query: 5 LDFLKGLGAARLTAMIAVTAALIGFFGFVIMRVTAPQMTTLFTDLGMDDSSSIIKDLERQ 64 L++L L A +I +A + +++ P TLF++L D +I+ L + Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72 Query: 65 GIPFEIRNEGSVILVPKDKVTRLRMKLAEGGLPKGGGVGYEIFDKSDALGTTSFVQNINH 124 IP+ N I VP DKV LR++LA+ GLPKGG VG+E+ D+ G + F + +N+ Sbjct: 73 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQE-KFGISQFSEQVNY 131 Query: 125 LRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVVRVRG--ALDAAQIR 182 RALEGELARTI + +++ARVHL +P+ LF RE PSAS+ V + ALD QI Sbjct: 132 QRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQIS 191 Query: 183 AIRHLVASAVNGLKPQRVSIVDEAGQLLA---DGTQTDIDQQVGDERRNTFEKRMRKQVE 239 A+ HLV+SAV GL P V++VD++G LL + D Q+ E R+++++E Sbjct: 192 AVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFAND--VESRIQRRIE 249 Query: 240 DIVSSVVGAGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREEQSASSE------- 292 I+S +VG G Q++A DF QT + Y P G +++ + + S + Sbjct: 250 AILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPG 309 Query: 293 ------SNGQVTVNNE----LPGNQQNQQQ---------QQPPRDQSKKTEETNNYEISR 333 SN N P NQQN Q +S + ET+NYE+ R Sbjct: 310 GVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDR 369 Query: 334 TTKTEVTEAGRVNRISVAVLVDGAYSKNEKGELVYKERSKEELDRIAALVRSAIGFDQKR 393 T + G + R+SVAV+V+ + K + +++ +I L R A+GF KR Sbjct: 370 TIRHTKMNVGDIERLSVAVVVNYKTLADGKPL----PLTADQMKQIEDLTREAMGFSDKR 425 Query: 394 GDQVEVVNLKFAD-APTVPQINEPSGFLGMLQFTKDDVMYVIELAVMMLLGIVVVFMVVR 452 GD + VVN F+ T ++ F F + L V+++ I+ VR Sbjct: 426 GDTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRK-AVR 480 Query: 453 PLVKKIIASDEVAAALKSAVPALTDETAQAQAHAQQTATLIDVAQVQGQVHAQSVHRVGE 512 P + + E A A + + + + L Q R+ E Sbjct: 481 PQLTRR---VEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIRE 537 Query: 513 LADRNPGEAAAIIRQWL 529 ++D +P A +IRQW+ Sbjct: 538 MSDNDPRVVALVIRQWM 554
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 32.1 bits (72), Expect = 0.006 Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 5/180 (2%) Query: 353 AQAANQANAPASDPTAQLATALQPQLTTPTSQSGQITSANLTATAATATAVPLHGLAVEI 412 A Q+ A + + A P +T +Q +A + +A + L+ I Sbjct: 190 LVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVL-SAPLGSHEWQQSLSQHI 248 Query: 413 AASALNGKSRFEIRLDPAELGRIDVRIDVDRNGQVTSHLRVEKPETLAMLQQTAPQLQQA 472 + G+ E+RL P +LG + + + VD N Q + A L+ P L+ Sbjct: 249 SLFTRQGQQSAELRLHPQDLGEVQISLKVDDN-QAQIQMVSPHQHVRAALEAALPVLRTQ 307 Query: 473 LQDAGL---KSNNSGLQFSLRDQNSSGQNGGDNQQNGNAQRLIVTEDETVPAQLAGRSYG 529 L ++G+ +SN SG FS + Q +S Q N + VP L GR G Sbjct: 308 LAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVSLQGRVTG 367
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 29.7 bits (66), Expect = 7e-04 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 7/55 (12%) Query: 3 PSGLASIPQPVP---GRGEV----LVKVAASGVNPLGIKIRAGVAAHARHPFHAV 50 P GLASI P+P RG L + G P G+ + AR H V Sbjct: 32 PDGLASITLPLPISAERGFAPALALHYSSGGGNGPFGVGWSCATMSIARSTSHGV 86
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.020 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 13/54 (24%) Query: 34 GRNGTGKTTLLKTLMGLTDRMDGQIRLGDQ-------------EIGREPTFRRA 74 G G GK+TL+ TL+GL D +G E+ FRRA Sbjct: 603 GTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAFRRA 656
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 872 bits (2255), Expect = 0.0 Identities = 315/570 (55%), Positives = 397/570 (69%), Gaps = 8/570 (1%) Query: 3 TIDRRDYAALYGPTIGDAVRLGDTSLFAVVEKDHAVYGDECLHGGGKTLRDGIGMAGLTS 62 + R YA ++GPT+GD VRL DT LF VEKD +G+E GGGK +RDG+G + +T Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 63 AEGALDFLLCNVTVIDPVIGIVKGDLGIRNGRIVGIGKAGNPAIMDGVDPRLIVSTGTTV 122 GA+D ++ N ++D GIVK D+G+++GRI IGKAGNP + GV +IV GT V Sbjct: 64 EGGAVDTVITNALILDHW-GIVKADIGLKDGRIAAIGKAGNPDMQPGVT--IIVGPGTEV 120 Query: 123 RDCEGLIATPGAIDVHVHFDSAGLVEHALASGITTMIGGSLGPIT---VGIDSGGPFNTG 179 EG I T G +D H+HF +E AL SG+T M+GG GP + GP++ Sbjct: 121 IAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIA 180 Query: 180 KMLQAAEAWPMNFGFLGRGNSHREAPLIEQLQTGVMGLKLHEDWGTMPAAIDTCLRVADA 239 +M++AA+A+PMN F G+GN+ L+E + G LKLHEDWGT PAAID CL VAD Sbjct: 181 RMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADE 240 Query: 240 QDFQVQIHTDTLNESGFVENTLEAIGGRTIHMYHTEGAGGGHAPDIIRVAGEMHCLPSST 299 D QV IHTDTLNESGFVE+T+ AI GRTIH YHTEGAGGGHAPDIIR+ G+ + +PSST Sbjct: 241 YDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSST 300 Query: 300 NPTNPYTVNTFDEHLDMTMVCHHLNPAIPEDVAFAESRIRAQTIAAEDVLHDIGAISMLG 359 NPT PYTVNT EHLDM MVCHHL+P IPED+AFAESRIR +TIAAED+LHDIGA S++ Sbjct: 301 NPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIIS 360 Query: 360 SDSQGMGRIHEVICRTWQLASKMKDQRGALPEDRPGFGDNARIRRYIAKYTINAAKTFGI 419 SDSQ MGR+ EV RTWQ A KMK QRG L E+ G DN R++RYIAKYTIN A G+ Sbjct: 361 SDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEE-TGDNDNFRVKRYIAKYTINPAIAHGL 419 Query: 420 ADHIGSLEDGKIADIVVWRPAFFGIKPELVIKSGFIAWGAMGDSAASLMTCEPMLLRPQW 479 + IGSLE GK AD+V+W PAFFG+KP++V+ G IA MGD AS+ T +P+ RP + Sbjct: 420 SHEIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMF 479 Query: 480 GAFGRAPAALSACFVHPLAIARGLAAELGLSKQLLPVKGTR-GLTKRDMVWNDTCPTIRV 538 GA+GR+ S FV ++ GLA LG++K+L+ V+ TR G+ K M+ N P I V Sbjct: 480 GAYGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEV 539 Query: 539 DPETFDVFVNGELATCEPARELPLARRYML 568 DPET++V +GEL TCEPA LP+A+RY L Sbjct: 540 DPETYEVRADGELLTCEPATVLPMAQRYFL 569
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 43.6 bits (103), Expect = 1e-06 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 12/72 (16%) Query: 1 MDLIIRNAVLAQQGELRCADIGISKGRIAAIA----PSLQ--------ADGEARDAENCL 48 +D +I NA++ + ADIG+ GRIAAI P +Q E E + Sbjct: 68 VDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKI 127 Query: 49 VVPGLIETHIHL 60 V G +++HIH Sbjct: 128 VTAGGMDSHIHF 139
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 34.4 bits (79), Expect = 4e-04 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 28/125 (22%) Query: 2 YAVTGATGHLGRKVVARLREFVPSSEIVAV----------VRDARKA--ADLGVGIRTAD 49 Y VTGA G +G V RL E ++V + ++ AR A G D Sbjct: 3 YLVTGAAGFIGFHVSKRLLE--AGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 50 YADPRALE--------------GALAGIERLLLISSSSFGTRQAEHANVIAAAKTAGVGH 95 AD + + L + + N++ + + H Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 96 LVYTS 100 L+Y S Sbjct: 121 LLYAS 125
>PF06580#Sensor histidine kinase Length = 349 Score = 44.5 bits (105), Expect = 8e-07 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 26/105 (24%) Query: 456 LVSNAIKF----TERGGRVMVSAAIEGPQLLLRITDTGVGIAADDLKRIGDPFFQAGKTY 511 LV N IK +GG++++ + + L + +TG Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLAL------------------ 304 Query: 512 QRRHEGTGLGLSIVKS-LVNLHGGE--MSIESKLDEGTTVSIALP 553 + E TG GL V+ L L+G E + + K + +P Sbjct: 305 KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEK-QGKVNAMVLIP 348
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.2 bits (65), Expect = 0.004 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Query: 8 SLVAASLLASGAAYAQSTTVE-------GAANGAAAGGAVAGPVGAMVGGTVGAAVG 57 SL+AA +GA A TT+ + AA V PV A+VG G G Sbjct: 352 SLLAAFHKETGAIDASLTTISTVLASVSSGISAAATTSLVGAPVSALVGAVTGIISG 408 Score = 28.8 bits (64), Expect = 0.006 Identities = 6/27 (22%), Positives = 11/27 (40%) Query: 30 AANGAAAGGAVAGPVGAMVGGTVGAAV 56 A AA G + + ++ V A+ Sbjct: 292 IAQRAAQGLSTSAAAAGLIASAVTLAI 318
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.2 bits (73), Expect = 7e-04 Identities = 10/64 (15%), Positives = 27/64 (42%) Query: 93 RFAVKHSIYVHHEHLGRGVGRLLMQALIDASAAAGYRQMIGYIDADNTASLGIHERFGFV 152 +A+ I V ++ +GVG L+ I+ + + ++ N ++ + + F+ Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 153 RVGL 156 + Sbjct: 148 IGAV 151
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 29.7 bits (66), Expect = 0.028 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 4/133 (3%) Query: 84 SEIGSQVVVQGRVIGNAKASAY--QAMKPQLMKAVLDSFHHLIADTDIALVEGAGSASEI 141 + +G V+V ++ A ++ QA+ P +M+ VL LI +EG G + Sbjct: 344 AAVGLAVMVADEIVKAATGVSFIQQALNP-IMEHVLKPLMELIGKAITKALEGLGVDKKT 402 Query: 142 NLRAGDIAN-MGFAQATQIPVVLIGDIDRGGVIASLVGTQAVLAPDDAALIAGFLVNKFR 200 AG I + A A +V++ + +G ++ L+ L + Sbjct: 403 AEMAGSIVGAIVAAIAMVAVIVVVAVVGKGAAAKLGNALSKMMGETIKKLVPNVLKQLAQ 462 Query: 201 GDPALFASGMSEI 213 LF GM I Sbjct: 463 NGSKLFTQGMQRI 475
>FLAGELLIN#Flagellin signature. Length = 507 Score = 88.9 bits (220), Expect = 3e-22 Identities = 74/270 (27%), Positives = 127/270 (47%), Gaps = 12/270 (4%) Query: 4 ISTNIAANSAVRYLNINSNQETSSLSKLSSGSRITSASDDAAGLAISTRISSDITTLQQA 63 I+TN + LN + + +S++ +LSSG RI SA DDAAG AI+ R +S+I L QA Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 ATNAAQATSILQTADGGASNISDILARMKSLASESASGTTVGTSRTYIQSEFSQLISEIS 123 + NA SI QT +G + I++ L R++ L+ ++ +GT + IQ E Q + EI Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 124 SIATGTRYSGQSLLDGTSTFSAGVSVLVGSSATDTIDIKLSDLTASTLGVSSLDVSTQSG 183 ++ T+++G +L + + + VG++ +TI I L + +LG+ +V+ Sbjct: 124 RVSNQTQFNGVKVLSQDNQ----MKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 184 AT--------AALTTLDTAIDTVSKARADIGAQESRFNFSADSISTQTQNLQSANSAIKD 235 AT +T DT +K R D+ + + +A ++ + + D Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 236 VDIASEQAKLSSAQVKTQAAVSAEAAANQI 265 + L T A+A A I Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269 Score = 57.4 bits (138), Expect = 1e-11 Identities = 45/215 (20%), Positives = 81/215 (37%), Gaps = 2/215 (0%) Query: 61 QQAATNAAQATSILQTADGGASNISDILARMKSLASESASGTTVGTSRTYIQSEFSQLIS 120 T + ++I+ A + + +S+ + Sbjct: 292 GNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNE 351 Query: 121 EISSIATGTRYSGQSLLDGTSTFSAGVSVLVGSSATDTIDIKLSDLTASTLGV--SSLDV 178 + + T + + G T D TAS + + Sbjct: 352 SAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAA 411 Query: 179 STQSGATAALTTLDTAIDTVSKARADIGAQESRFNFSADSISTQTQNLQSANSAIKDVDI 238 + + L ++D+A+ V R+ +GA ++RF+ + ++ NL SA S I+D D Sbjct: 412 AAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADY 471 Query: 239 ASEQAKLSSAQVKTQAAVSAEAAANQIPQYLLKLL 273 A+E + +S AQ+ QA S A ANQ+PQ +L LL Sbjct: 472 ATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 38.0 bits (88), Expect = 6e-05 Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 345 TATSGNATLQASGENGAGTIYGSELESSTTDTTGQFSNMISAQQAYSAASQVISAVNKMY 404 T+ T A+ N + + S + ++ N+ QQ Y A +QV+ N ++ Sbjct: 480 NKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIF 539 Query: 405 DTLIS 409 D LI+ Sbjct: 540 DALIN 544 Score = 30.7 bits (69), Expect = 0.010 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 9/66 (13%) Query: 4 SGALSSAISALNAQSSSLAMISDNISNADTTGYKTTSGLFEQLVTASSNSKAYSSG---- 59 S +++A+S LNA ++L S+NIS+ + GY + + A +NS + G Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT-----TIMAQANSTLGAGGWVGN 55 Query: 60 GVSVSS 65 GV VS Sbjct: 56 GVYVSG 61
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 113 bits (283), Expect = 1e-28 Identities = 123/593 (20%), Positives = 235/593 (39%), Gaps = 77/593 (12%) Query: 9 VAFSGISATELQISVASSNISNADTKGYTEKS---ANQVATVTGG--VGTGVSITGISSN 63 A SG++A + ++ AS+NIS+ + GYT ++ A +T+ G VG GV ++G+ Sbjct: 6 NAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGVQRE 65 Query: 64 VDKLLLKSLIGANSELGAADTTNSYLEQLQQLFGSASTSGTSTTGTSLANALASLESALS 123 D + L A ++ + ++ + ++++S LA + ++L Sbjct: 66 YDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSS--------LATQMQDFFTSLQ 117 Query: 124 SLASSPSSVSLQSAAVSALDDFASQLRSTSSGVQSLRANSDKDIASSVKSVNDDLQQIAD 183 +L S+ + + A + + +Q ++T ++ + I +SV +N+ +QIA Sbjct: 118 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 177 Query: 184 LNVQIRKMAA--AGQSTADLEDQRNSALQDLSSYMNVSYYTASNGDLQVYTSSGRALVD- 240 LN QI ++ AG S +L DQR+ + +L+ + V G + ++G +LV Sbjct: 178 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 237 Query: 241 SSAHTLSYTASANVSASS--SYSSGGFSGIMVDGVDVTSQITSGKIGALITLRDQTLPAT 298 S+A L+ S+ + + +Y G I + + +G +G ++T R Q L T Sbjct: 238 STARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKL----LNTGSLGGILTFRSQDLDQT 293 Query: 299 QTQLDQLATELKSALNAITNGASAVPPPTSLTGSASVSSTTALAASGTVRIAVADQSGNL 358 + L QLA A N A+G Sbjct: 294 RNTLGQLALAFAEAFNTQ--------------------HKAGFDANGDAGEDFFAIGKPA 333 Query: 359 VSYK---DLDLSSYATVGDLVTALNGISGVSASLD------SSGYLSISATSSSNGIAIN 409 V D++ ATV D L +S + + + + T +NG Sbjct: 334 VLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAF 393 Query: 410 DMT--SSVGGGGFSEYFGMNDLVTGTGAANFAV-DSSILSGAAGLPTGTLDNSATLTTGS 466 D + G ++ F + + + + D + ++ A+ G DN Sbjct: 394 DGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNR------- 446 Query: 467 QVLTSGSATIINQLYDKLTGSTSFSSAGGLSATTGSFADYAAAIVANVASKATQASSNYT 526 +G A + Q K G SF D A++V+++ +K ++ Sbjct: 447 ----NGQALLDLQSNSKTVGGAK------------SFNDAYASLVSDIGNKTATLKTSSA 490 Query: 527 AKSTAQASYASSLSSQSGVNIDEETARVSSLQNKYAAASQLISVVNSMFSSLL 579 + ++ S SGVN+DEE + Q Y A +Q++ N++F +L+ Sbjct: 491 TQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALI 543
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 73.5 bits (180), Expect = 1e-16 Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 1/190 (0%) Query: 211 RDLRGTRVVVTGASSGIGRATALALAREGASVVLAARRENVLKDVALECETLGGRAIAVA 270 + + G +TGA+ GIG A A LA +GA + L+ V + A A Sbjct: 4 KGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 271 TDVTDADAVKRLAEQAVRTFGGVDVWINNAGTGVFGPYQDADMALHRKTVEVNLLGTMNG 330 DV D+ A+ + + R G +D+ +N AG G T VN G N Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 331 AYAVLPIFLRQRRGTLINNISLGGWAPTPFAAAYTASKFGLRGFSASLRQELTAHKDVHV 390 + +V + +R G+++ S P AAY +SK F+ L EL A ++ Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL-AEYNIRC 182 Query: 391 CSVFPAMVDT 400 V P +T Sbjct: 183 NIVSPGSTET 192
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.5 bits (154), Expect = 1e-14 Identities = 29/183 (15%), Positives = 71/183 (38%), Gaps = 10/183 (5%) Query: 14 QPQQARSTDLVAAILEAAVQVLTTEGAQRFTTARVAEKAGVSVGSLYQYFPNKAAILFRL 73 + + + + IL+ A+++ + +G + +A+ AGV+ G++Y +F +K+ + + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 74 QSDEWQQTTRLLHGILEDTSRPPLVRLRALVHAFLQ---SECDEAAIRGALDDAAPLYRD 130 L PL LR ++ L+ +E + + + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 131 APEARQATASGRRALLAFMREVLPDAGEA-------DRARAADLIKATLSQVGKHFSETP 183 +QA + + + L EA RAA +++ +S + +++ P Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182 Query: 184 RNR 186 ++ Sbjct: 183 QSF 185
>PERTACTIN#Pertactin signature. Length = 922 Score = 28.9 bits (64), Expect = 0.005 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 15 ADPERDQLLPAGPVPPPCQAQVPPEQLPEPPKLVVPRRPVTAPLRVQALASLAVAAAAAA 74 A P GP P P Q P P+PP+ P + Q A ++AAA A Sbjct: 567 APPAPKPAPQPGPQPGPQPPQPPQP--PQPPQPPQPPQRQPEAPAPQPPAGRELSAAANA 624 Query: 75 TNNKVAISLFTSL 87 N + L ++L Sbjct: 625 AVNTGGVGLASTL 637
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 1e-22 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 6/163 (3%) Query: 6 ATLLMVEDDPEISRLVRDFMRREGFEIEVAENAAAMDAVLRRLRPDLIILDLMLPGEDGL 65 AT+L+ +DD I ++ + R G+++ + NAA + + DL++ D+++P E+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 SICRRLRQSD-DIPILMLSAKSDEIDRVVGLELGADDYMVKPFGPRELLARVRALLRRAQ 124 + R++++ D+P+L++SA++ + + E GA DY+ KPF EL+ + L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 125 ASPRREASRRFAFDRFVLDVDA-----RSIETVSGGDAPIQLT 162 P + V A R + + D + +T Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMIT 166
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 28.7 bits (64), Expect = 0.028 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 18/64 (28%) Query: 198 EAVKAAALTKGVPPDRIHFELF----------------RAETPS--SPDRPFEVELRSTG 239 ++V ++KG+P D+I RA +PDR E+E++ Sbjct: 279 QSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIK 338 Query: 240 QVVT 243 VVT Sbjct: 339 DVVT 342
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.020 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 4/36 (11%) Query: 39 VSLVVEPG---EFVALL-GPSGCGKSTLLRLIAGLD 70 V+ V+EPG ++ +L G G GKSTL+ + GLD Sbjct: 585 VARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLD 620
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.003 Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 15/130 (11%) Query: 42 AATETEDPDVIA--ATMAKPG-VVLKRPAGSTGRFAEQSEL-----PDLDDEESIPKKKA 93 + + P V + +A+ + PA +T +E +E ++ A Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATP--SETTETVAENSKQESKTVEKNEQDA 1058 Query: 94 GRPEAKRR-----AAPTVSVEDSRKAAAQFEREQRRRDAQRRKEEAIREKERARREKLIA 148 A+ R A V AQ E + KE A EKE + + Sbjct: 1059 TETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEK 1118 Query: 149 KAQAALEAAQ 158 + +Q Sbjct: 1119 TQEVPKVTSQ 1128 Score = 28.5 bits (63), Expect = 0.024 Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 19/168 (11%) Query: 45 ETEDPDVIAATMAKPGVVLKRPAGSTGRFAEQSELPDLDDEESIPKKKAGR-PEAKRRAA 103 +T D I V P+ + A E P + P + E ++ + Sbjct: 990 QTVDTTNITTPNNIQADVPSVPSNNEEI-ARVDEAPVPPPAPATPSETTETVAENSKQES 1048 Query: 104 PTVSVEDSRKAAAQFEREQRRRDAQRRKEEAIR---------EKERARREKLIAKAQAAL 154 TV + + +EA E ++ E + Sbjct: 1049 KTVEKNEQDATETT-------AQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 155 EAAQQEHNERLGNLEAERRDLEKRIEAEDRRWEAEREKLRDALRRVRE 202 E A E E+ +E E+ ++ ++ + + E ++ RE Sbjct: 1102 ETATVEKEEK-AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.6 bits (121), Expect = 8e-09 Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 15/123 (12%) Query: 267 APRDGIVLERNA-VEGMRANPGDVLFRIA-DISLVWALVDVAERDLGSIAVGQPVTIRAR 324 AP V + EG + L I + + V +D+G I VGQ I+ Sbjct: 332 APVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVE 391 Query: 325 SFPGRTF---TGSIAVIYPQVNKDTRTA---RVRIEL-------ANSDLALLPDMYVDAE 371 +FP + G + I +D R V I + N ++ L M V AE Sbjct: 392 AFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAE 451 Query: 372 IDT 374 I T Sbjct: 452 IKT 454 Score = 30.6 bits (69), Expect = 0.014 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 155 TLHVAVKAPGTIQLDERRVSVIAMRAESFVQKVADVTTGTRVKAGQPLMEI 205 + + A G + R + + S V+++ V G V+ G L+++ Sbjct: 79 QVEIVATANGKLTHSGRSKEIKPI-ENSIVKEII-VKEGESVRKGDVLLKL 127
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.002 Identities = 15/22 (68%), Positives = 16/22 (72%) Query: 48 VVLLGPSGSGKSTLLNILGGLD 69 VVL G G GKSTL+N L GLD Sbjct: 599 VVLEGTGGIGKSTLINTLVGLD 620
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.8 bits (106), Expect = 3e-07 Identities = 44/253 (17%), Positives = 79/253 (31%), Gaps = 31/253 (12%) Query: 99 RTRREVEEMLGTGEANLERAKAVVERARALSDQANTDLARTRTLAQQGAATAQAFERAEL 158 + + E L A A + R LS + L +L + A A E Sbjct: 200 NQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQEN 259 Query: 159 AARLAERDLRAAEFQDHAAEHEISQLRALLARYSND------------------------ 194 A +LR + Q E EI + + Sbjct: 260 KYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELA 319 Query: 195 -GGGQPEAWNVASPVAGVVLKVAQESE-TIVQPGTPLLDI-GDASDIEVVVDVLSTNAVE 251 + +A + +PV+ V ++ +E +V L+ I + +EV V + + Sbjct: 320 KNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGF 379 Query: 252 IRAGADVTID----NWGGEGKLKGRVRRVEPAAFTKISTLGVEEQRVNVLVDILSPSEQW 307 I G + I + G L G+V+ + A V +++ + LS + Sbjct: 380 INVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKN 439 Query: 308 ARLGDAYQVDVQI 320 L V +I Sbjct: 440 IPLSSGMAVTAEI 452
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 23.6 bits (51), Expect = 0.049 Identities = 6/26 (23%), Positives = 9/26 (34%) Query: 5 SLGWLALFRWLPARLAPCFFALAVFG 30 L WL L+ W R+ + Sbjct: 9 WLSWLNLYFWPLLRVLALISTAPILS 34
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.037 Identities = 9/17 (52%), Positives = 9/17 (52%) Query: 38 GPNGAGKSTFFNILSGT 54 G G GKST N L G Sbjct: 603 GTGGIGKSTLINTLVGL 619
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 85.5 bits (211), Expect = 1e-21 Identities = 67/253 (26%), Positives = 110/253 (43%), Gaps = 16/253 (6%) Query: 54 LAGRKALITGGDSGMGRAAAIAYAREGADV-AINYYPTEEADAQEVIGLIT----ALPGD 108 + G+ A ITG G+G A A A +GA + A++Y P + + A P D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 109 LRDERFCQQLVQQAVEALGGLDIIVSNAARQQARQSILDVSSEDFDATMKTNIYAPFWII 168 +RD ++ + +G +DI+V N A I +S E+++AT N F Sbjct: 66 VRDSAAIDEITARIEREMGPIDILV-NVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 169 KAALPHLKP--GSAIIGTSSEQAYDPSPDLYDYAQTKAATMNYVKSLAKQLGPKGIRVNA 226 ++ ++ +I+ S A P + YA +KAA + + K L +L IR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 227 VAPGPIWTPLQVS------GGATMEK--LEKFGGHTPLGRPGQPAELASIYVQLAAADAS 278 V+PG T +Q S G + K LE F PL + +P+++A + L + A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 279 YANGQVYGASGGS 291 + GG+ Sbjct: 245 HITMHNLCVDGGA 257
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 24.0 bits (52), Expect = 0.019 Identities = 8/32 (25%), Positives = 16/32 (50%) Query: 3 SADVVSRQLIAVYPELRSQNYARLVTNEEGDE 34 SA++V +Q + +YP + N+ + E Sbjct: 149 SAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.0 bits (187), Expect = 4e-16 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 1576 TVLLVDDDARNIFALSSVLERRGMKVLTATTGAEAIDLVQSTPAISIVLMDIMMPQMDGY 1635 T+L+ DDDA L+ L R G V + A + + +V+ D++MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDENAF 63 Query: 1636 QTIGVIRQNPAFARLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLLAIR 1690 + I++ A LP++ ++A+ K E GA DYL KP + +L+ I Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Score = 66.0 bits (161), Expect = 7e-13 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 7/130 (5%) Query: 1307 TTLLIVEDDPHYARVLIDLARDKGFKILVATRGAEALDLAKQYQPAAISLDVFLPDMLGW 1366 T+L+ +DD VL G+ + + + A + DV +PD + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 1367 TVLSQLK-HNPLTRHIPVQIITLD---EDRQHALARGAFSFVNKPTTTEGVSAALSQIKE 1422 +L ++K P +PV +++ A +GA+ ++ KP + + + Sbjct: 64 DLLPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 1423 YAQPRRKRLL 1432 + R +L Sbjct: 121 EPKRRPSKLE 130 Score = 65.2 bits (159), Expect = 1e-12 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 1428 RKRLLIVEDNAAEQLSIRQLLDHDDIEILAADTGAGALEALRGTPCDCVVLDLRLPDMSG 1487 +L+ +D+AA + + Q L ++ A + D VV D+ +PD + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 1488 FDVLDQLRSDETLSGIPVVVFTG 1510 FD+L +++ +PV+V + Sbjct: 63 FDLLPRIKKAR--PDLPVLVMSA 83
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 37.6 bits (87), Expect = 3e-05 Identities = 49/223 (21%), Positives = 76/223 (34%), Gaps = 34/223 (15%) Query: 22 AADLAARPYTKAPMAAPAPLPTWTGFYIGLQGGGGWGRSDETFFNAPNGFGFAGTQRYDI 81 A +A A +A AP +Y G GW + +T F NG T + Sbjct: 5 AIAIAVALAGFATVAQAAPKDN--TWYTG--AKLGWSQYHDTGFINNNG----PTHENQL 56 Query: 82 NGGFAGGVIGYNWQVDNIVFGLEGDYHWADINGRSGVITAGLGDSYFTKLRGFGDIKGRL 141 G GG +QV N G E Y W GR G ++ K +G + +L Sbjct: 57 GAGAFGG-----YQV-NPYVGFEMGYDWL---GRMPY--KGSVENGAYKAQG-VQLTAKL 104 Query: 142 GWAAGPAL-FFVSGGAAVGDLQHRYDNPAFSTIQNDWRWGWTIGAGAEYMFAPNWSAKVE 200 G+ L + G V + + + +D G EY P + ++E Sbjct: 105 GYPITDDLDIYTRLGGMVWRADTKSNVYGKN---HDTGVSPVFAGGVEYAITPEIATRLE 161 Query: 201 YNYLDFGKSTLQYNNPLVASNRSEWSDTVHTVKAGISYHFGGP 243 Y Q+ N + ++ + G+SY FG Sbjct: 162 Y----------QWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQG 194
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 37.2 bits (86), Expect = 5e-05 Identities = 50/262 (19%), Positives = 73/262 (27%), Gaps = 69/262 (26%) Query: 1 MKSTLFVTAGVAALGLAPASAADFAARPYGKAPPPAYVTPLPSWAGFYLGANGGADWSRN 60 MK T +A A+ A A P +Y GA G + Sbjct: 1 MKKTA---IAIAVALAGFATVAQAA----------------PKDNTWYTGAKLGWSQYHD 41 Query: 61 CWTLNRVNGVPVVPTQSEGCHN--ATSGLIGGQIGYRWQAASWVFGLEAQGNWTDLKSSN 118 +N H +G GG +Q + G E +W Sbjct: 42 TGFINNNGP----------THENQLGAGAFGG-----YQVNPY-VGFEMGYDWL------ 79 Query: 119 ASSAAFAAGITNNTKTDAIGL-FTGQIGYAWGNVL-WYVKGGAAVAHNKYTGTANAAAPV 176 G N A G+ T ++GY + L Y + G V Sbjct: 80 --GRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTKSNVY----- 132 Query: 177 AVGTLLDSASETRWGGTVGTGVEFGFAPNWSVAVEYDHLFMGSRDITFPATAIVNARVDT 236 +T GVE+ P + +EY I +A Sbjct: 133 ------GKNHDTGVSPVFAGGVEYAITPEIATRLEYQWT-----------NNIGDAHTIG 175 Query: 237 IKQDIDMATVRVNYRFGGPAAA 258 + D M ++ V+YRFG AA Sbjct: 176 TRPDNGMLSLGVSYRFGQGEAA 197
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 43.0 bits (101), Expect = 4e-07 Identities = 49/245 (20%), Positives = 73/245 (29%), Gaps = 48/245 (19%) Query: 1 MKKLLVITTALVGIAAAMPASAADLAARPYTKAPPVVVPILSWSGIYAGIQGGGGWGTSK 60 MKK I A+ A A AA + Y G + G Sbjct: 1 MKKTA-IAIAVALAGFATVAQAAPKD-----------------NTWYTGAKLGWSQ---- 38 Query: 61 ETFIGRFNAPGFLGTQNYNTNGGFVGGVIGYNWQFDNLVVGLEGDYHWSDINGRSAVINA 120 ++ GF+ G G +Q N VG E Y W GR + Sbjct: 39 ------YHDTGFINNNGPTHENQLGAGAFG-GYQV-NPYVGFEMGYDWL---GRMPYKGS 87 Query: 121 GVGDTYFTKLTSFGDIKGRLGYAVGPAL-FFVSGGAAVGELQHRYDRAAGVFFGQNTTRW 179 Y + +LGY + L + G V R D + V+ + T Sbjct: 88 VENGAYKAQGVQLT---AKLGYPITDDLDIYTRLGGMVW----RADTKSNVYGKNHDTGV 140 Query: 180 GYTVGAGAEYMFAPNWSAKLEYNYLDFGKSTLQYVGVPGRSEWKDSVHTVKAGLNYHFGG 239 G EY P + +LEY + + +G + + G++Y FG Sbjct: 141 SPVFAGGVEYAITPEIATRLEYQWTN-------NIGDAHTIGTRPDNGMLSLGVSYRFGQ 193 Query: 240 PVIAK 244 A Sbjct: 194 GEAAP 198
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 31.4 bits (71), Expect = 0.002 Identities = 45/221 (20%), Positives = 76/221 (34%), Gaps = 39/221 (17%) Query: 1 MKKILLATVALAALAAPAAAADLAARPTYTKAPVLAPVQTWTGFYIGAF---GGYANEDA 57 MKK +A A A A A YT A + W+ ++ F G +E+ Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKL-----GWSQYHDTGFINNNGPTHENQ 55 Query: 58 STAALKGGFA-----GGTVGYNWQQGPLVFGLEADAAWADINATVGIPGVFGLTDRIEST 112 A GG+ G +GY+W G + A+ + + +TD ++ Sbjct: 56 LGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIY 115 Query: 113 GTVRGRIGYAFDTVLLYGTGGYAWGNNKLSATVGGVAGSETKFLSGWAAGAGVEWMFAPK 172 + GG W + S G + + GVE+ P+ Sbjct: 116 TRL----------------GGMVWRADTKSNVYGKNHDTGVSPV----FAGGVEYAITPE 155 Query: 173 WSLKGEYLYKSLESSTYFGGAVPLGT-LNLHTFQVGVNYHF 212 + + EY + + G A +GT + +GV+Y F Sbjct: 156 IATRLEYQW-----TNNIGDAHTIGTRPDNGMLSLGVSYRF 191
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 325 bits (834), Expect = e-114 Identities = 128/280 (45%), Positives = 176/280 (62%), Gaps = 6/280 (2%) Query: 8 QLFPLALLPLFARPARAA----DLQQTIAGIEADCGGRLGVALLDSASGA-LSGHRLDER 62 + L ++ L A A + I E+ GR+G+ +D ASG L+ R DER Sbjct: 2 RYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADER 61 Query: 63 FPMCSTFKALLAAAILTKVDAGAEQLSRRIPIAQADILSYAPVTKQHVGTSGLSVGELCE 122 FPM STFK +L A+L +VDAG EQL R+I Q D++ Y+PV+++H+ G++VGELC Sbjct: 62 FPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLAD-GMTVGELCA 120 Query: 123 ATVTLSDNTAANLLLATLDGPAGLTRTIRGFGDAITRLDRIEPGLNESIPGDPRDTTTPA 182 A +T+SDN+AANLLLAT+ GPAGLT +R GD +TRLDR E LNE++PGD RDTTTPA Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180 Query: 183 AMAQTLAKLTVANTLSAASRDVMNGWLIGCKTGAAKLRAGLPAEWRVGDKTGAGDHGSSN 242 +MA TL KL + LSA S+ + W++ + +R+ LPA W + DKTGAG+ G+ Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGAGERGARG 240 Query: 243 DVAVIWPAGRGPVIVTSYLTETKASDDRRNAAHAAVGRAV 282 VA++ P + IV YL +T AS RN A +G A+ Sbjct: 241 IVALLGPNNKAERIVVIYLRDTPASMAERNQQIAGIGAAL 280
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 717 bits (1852), Expect = 0.0 Identities = 283/571 (49%), Positives = 378/571 (66%), Gaps = 11/571 (1%) Query: 3 TLTRRAYAELYGPTKGDLVRLADTSLLAEIEHDYTTYGHELLVGAGKNLRDGEAVAAHRT 62 ++R AYA ++GPT GD VRLADT L E+E D+TT+G E+ G GK +RDG + T Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQ-VT 62 Query: 63 SQHKALDVVVKNATIVDAVIGIVKADIGIRDGRIVGIGKAGNSDVMPDVHPDMVVGHTTA 122 + A+D V+ NA I+D GIVKADIG++DGRI IGKAGN D+ P V ++VG T Sbjct: 63 REGGAVDTVITNALILDHW-GIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTE 119 Query: 123 PIAGGPFIVTAGAIESHAHLISPEQSDHALSGGTTTMIGNGSGPVFDVGSGS---GP-NF 178 IAG IVTAG ++SH H I P+Q + AL G T M+G G+GP + + GP + Sbjct: 120 VIAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHI 179 Query: 179 GHFLKSIEFSPLNYALFGRG-GSNPEAVEEAVAAGGMSVKIHEDFGAAPDVIDKTLIAAD 237 +++ + P+N A G+G S P A+ E V G S+K+HED+G P ID L AD Sbjct: 180 ARMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVAD 239 Query: 238 RHDFAVHLHTDSINEYGFCEDTMAAVDGRTIHMYHVEGAGGGHAPDLLKVVSWPNVIPSS 297 +D V +HTD++NE GF EDT+AA+ GRTIH YH EGAGGGHAPD++++ PNVIPSS Sbjct: 240 EYDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSS 299 Query: 298 TNPTNPYTSYGMEEGVPMTMICHQLNYNAPEDVMFGEARVRAQSMAAEDFLHDMGAISIF 357 TNPT PYT + E + M M+CH L+ PED+ F E+R+R +++AAED LHD+GA SI Sbjct: 300 TNPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSII 359 Query: 358 GTDTQGMGRLAENVAKCWQLASVMKDRTGRLPEETTARADNERIKRYIAKLTINPAIAVG 417 +D+Q MGR+ E + WQ A MK + GRL EE T DN R+KRYIAK TINPAIA G Sbjct: 360 SSDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEE-TGDNDNFRVKRYIAKYTINPAIAHG 418 Query: 418 IDHVVGSIEVGKMADLVLWPRASFGLKPYMVIKNGFPVWAAMGDGNGSLGLSEPMIQKRM 477 + H +GS+EVGK ADLVLW A FG+KP MV+ G A MGD N S+ +P+ + M Sbjct: 419 LSHEIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPM 478 Query: 478 WGALGAAPQRLGVNFMSKLAVDADIRGRLGLGRATVQIKNVR-RLRKTDMIRNAAMPHVE 536 +GA G + V F+S+ ++DA + GRLG+ + V ++N R + K MI N+ PH+E Sbjct: 479 FGAYGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIE 538 Query: 537 VDPQTFEVRADGKLLMCPPATTVPLARRFML 567 VDP+T+EVRADG+LL C PAT +P+A+R+ L Sbjct: 539 VDPETYEVRADGELLTCEPATVLPMAQRYFL 569
>PF02370#M protein repeat Length = 168 Score = 35.5 bits (81), Expect = 3e-04 Identities = 25/123 (20%), Positives = 56/123 (45%) Query: 215 QVEKRIRSRVKRQMEKTQREYYLNEQMKAIQKELGDEDGRDELADLEERINKTKLSKEAR 274 + + + R+ + + +RE ++++ ++KE ++ R E + ER ++ K +E + Sbjct: 45 ENDPQYRALMGENQDLRKREGQYQDKIEELEKERKEKQERPERREKFERQHQDKHYQEQQ 104 Query: 275 EKAQHELKKLRQMSPMSAEATVVRNYLDWLLSIPWNKKSKVKKDLEAAQAVLDADHYGLE 334 +K Q E ++L A+ + + L+ KK+LE L +H L+ Sbjct: 105 KKHQQEQQQLEAEKQKLAKEKQISDASRQGLNRDLEASRAAKKELEPKHQKLGTEHQKLK 164 Query: 335 KVK 337 + K Sbjct: 165 EEK 167
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 142 bits (359), Expect = 7e-47 Identities = 72/137 (52%), Positives = 97/137 (70%), Gaps = 8/137 (5%) Query: 1 MLKEFREFAMKGNVVDLAVGVIIGAAFGAIVTSLVSDVIMPIIGAITGGLDFSNYFIPLS 60 ++KEFREFAM+GNVVDLAVGVIIGAAFG IV+SLV+D+IMP +G + GG+DF + + L Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLR 62 Query: 61 KSVTAGNLADAKKQGAVLAYGQFLTLTLNFFIIAFVLFLIIRGMNRLKRLQETQPAAAPK 120 A V+ YG F+ +F I+AF +F+ I+ +N+L R +E +PAAAP Sbjct: 63 -------DAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKE-EPAAAPA 114 Query: 121 PSREVELLTEIRDLLKK 137 P++E LLTEIRDLLK+ Sbjct: 115 PTKEEVLLTEIRDLLKE 131
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 29.0 bits (65), Expect = 0.019 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 11/65 (16%) Query: 68 IAEAKGRVPVIAGAGSNSTREAV-----ELAEHAEKAGADAVLVVTP------YYNKPTQ 116 IA G VPVI G EAV + AE+ AD +++T YY + Sbjct: 190 IASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKE 249 Query: 117 EGLYQ 121 + L + Sbjct: 250 QWLRE 254
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.043 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 5/100 (5%) Query: 60 TAAKEGAESKGKADARAEAKPDSKSGPKGASEAPRAAAPRDIMPGTAGLPAPRQHAALPA 119 T KE A + + A+ E + + + +P+ + P PA + Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP--QAEPARENDPTVNI 1155 Query: 120 ARKPVVPAAVAATSSTSQSDKDALENVIELVRKRKPDDAT 159 + T+ T Q K+ NV + V + + Sbjct: 1156 KEP---QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG 1192
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 42.3 bits (99), Expect = 2e-07 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 3 GYDAASLNEIAGMVGIRKASLYSHVASKDELFLLVLEDAARIERDFVMATLAAPPSAGEP 62 G + SL EIA G+ + ++Y H K +LF + E + + + A P G+P Sbjct: 28 GVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFP--GDP 85 Query: 63 GGAYIEVLAARYDASVH 79 E+L +++V Sbjct: 86 LSVLREILIHVLESTVT 102
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 58.7 bits (142), Expect = 1e-11 Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 1/160 (0%) Query: 9 VAVALGLITLLAPVSVDMYLPSLPVMAEEMNTTYPAMQLTLMVFLLAMGAGQIVFGPVID 68 + + L +++ + ++ + SLP +A + N + F+L G V+G + D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 69 AYGRRRPLLVALAIFVVASLCAAVAHS-VEALLLARLLQGLAASLAIVTAMSTVRDIASG 127 G +R LL + I S+ V HS L++AR +QG A+ M V Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 128 VAAVQIFALLMTIQGLGPVMAPVLGGMIGAGLGWRAVFYF 167 + F L+ +I +G + P +GGMI + W + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI 174
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 25.4 bits (55), Expect = 0.038 Identities = 8/38 (21%), Positives = 13/38 (34%) Query: 35 DGIVDLIAAHKWFNLAALKGRVDAVAMRREVAEQMSDA 72 D + D L GR M + +Q+ +A Sbjct: 176 DAVADFSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNA 213
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 48.1 bits (114), Expect = 2e-07 Identities = 53/330 (16%), Positives = 119/330 (36%), Gaps = 37/330 (11%) Query: 195 PSNRFDAEGLTRLMEDIESKRKLRNDIEQDSMIKIRTRNLEAEREALDIERESETARLDQ 254 P+ +E + E+ + + K EQD+ A+ +++ ++T + Q Sbjct: 1028 PAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQ 1087 Query: 255 ERDIEMRRALQRTEVARERALRETEAEQAQIMARETIEKARIANELTIAEARIAAERDTR 314 T+ + +ET + + EKA++ E T ++ ++ + Sbjct: 1088 SG--------SETKETQTTETKETATVEKE-------EKAKVETEKTQEVPKVTSQVSPK 1132 Query: 315 QR--EIERTRAVEERELLAREDIEKARIANQR--AIDAARIESEREVRQRDIERTRTIEE 370 Q E + +A RE +I++ + + E+ V Q E T Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG 1192 Query: 371 AEIAAREAVEKARIQQDRVVSDARIANDEETRRREIERTRAIEQAEIAAREATEKARIAQ 430 + Q V S++ +N + R R R+ E A + +++ +A Sbjct: 1193 NSVVENPENTTPATTQPTVNSES--SNKPKNRHRRSVRSVP-HNVEPATTSSNDRSTVAL 1249 Query: 431 TMIVNLERIS--SDERTRATEIA--------QVRAIQEAEIEAQQAVEAARIAREQALSA 480 + + + SD R +A +A Q + E E Q V + + + S+ Sbjct: 1250 CDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSS 1309 Query: 481 E---RIAAEHATRKLEIER--NQGIEIAGI 505 R +++ +L ++ + +++ G+ Sbjct: 1310 SQYRRFSSKSTQTQLGWDQTISNNVQLGGV 1339 Score = 47.4 bits (112), Expect = 3e-07 Identities = 45/281 (16%), Positives = 82/281 (29%), Gaps = 22/281 (7%) Query: 394 RIANDEETRRREIERTRAIEQAEIAAREAT-------EKARIAQTMIVNLERISSDERTR 446 + N E +R + T I + E AR+ + + + E T Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 447 ATEIAQVRAIQEAEIEAQQAVEAARIAREQALSAERIAAEHATRKLEIERNQGIEIAGIA 506 + + E Q A E RE A A+ + T+ E+ + G E Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKS-NVKANTQTNEVAQ-SGSETKETQ 1096 Query: 507 AREATEASRIAQEERVRALEIARIRTIEEVDIASREAIEAARIAQELAVAARRIESEKTT 566 E E + + +EE+ + +T E + S+ + + + A E++ T Sbjct: 1097 TTETKETATVEKEEKAKVE---TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 567 RSLEIERTEAVEAADLKRREAVERRRIEVELALEAERIASSRTREVLNIDQKKAIELADE 626 E + A + + VE + ++ V N + Sbjct: 1154 NIKEPQSQTNTTADT---EQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT-TQP 1209 Query: 627 VRVIELAAKRAERIDADRQVKEAEIIARKQVETADVSREQA 667 E + K R + VE A S Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPH------NVEPATTSSNDR 1244
>PF05272#Virulence-associated E family protein Length = 892 Score = 216 bits (550), Expect = 2e-61 Identities = 98/386 (25%), Positives = 151/386 (39%), Gaps = 37/386 (9%) Query: 356 QQLAGELSDDAIIALRRIASDAFGANFGS-EVMLDAVRSIAIDHQYDPVCDMLDEAEAAW 414 ++ G L D ++ L +G S + A+ A ++ P D + W Sbjct: 487 RKAPGPLEDADVLRLADYVETTYGTGEASAQTTEQAINVAADMNRVHPFRDWVKAQ--QW 544 Query: 415 DGEPRLDRMAVDYLNAEDTLVN-------RAFIRKTMIAAVRRARHPGCKFDNITVLESP 467 D PRL++ V L + + ++ V R PGCKFD VLE Sbjct: 545 DEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGT 604 Query: 468 EGWNKSGFWRVIAGDQFYSDESIIGRQSREIQEQLSTVWIHENAELAGMKKQEVETVKAY 527 G KS + G F+SD ++ EQ++ + +E +E+ ++ + E VKA+ Sbjct: 605 GGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAFRRADAEAVKAF 664 Query: 528 ASRQEDIARPAYGRVVKRQPRHSIDVGTTNADTYLQSQTGNRRFWPIKVLAPIDLDKLKR 587 S ++D R AYGR V+ PR + TTN YL TGNRRFWP+ V +L L++ Sbjct: 665 FSSRKDRYRGAYGRYVQDHPRQVVIWCTTNKRQYLFDITGNRRFWPVLVPGRANLVWLQK 724 Query: 588 DRIQLLGEAAAYEKRGEAITLDP----SLWSAAGVEQDARRIRDPWEDILDDMPTHAYID 643 R QL EA GE P + EQ+ R + + Sbjct: 725 FRGQLFAEALHLYLAGERYFPSPEDEEIYFRP---EQELRLVETGVQG------------ 769 Query: 644 QNGHAEHIRVRPGEQEPVGAVRIIHVVGDRQCVATATLLQHVLQVPRERQTQTITMRLST 703 + R G GA + + V T L L + + + ++ Sbjct: 770 ---RLWALLTREGAPAAEGAAQKGYSVNTTFV--TIADLVQALGADPGKSSPMLEGQVRD 824 Query: 704 TMKQVGWERHHDKLVIDGQRVRGYWR 729 + + GWE + GQR RGY R Sbjct: 825 WLNENGWEYLRET---SGQRRRGYMR 847
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.042 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 23/89 (25%) Query: 15 VMDILQSLGMDVSKWADMKGGATRAASNPKYCYNWSFLQPGEFVVACLWYESLKQRSGEL 74 + D++Q+LG D K + M G R N +E L++ SG+ Sbjct: 800 IADLVQALGADPGKSSPMLEGQVRDWLNE------------------NGWEYLRETSGQ- 840 Query: 75 YYEINRGKWIKPRTEPGTGSSNKRANDFD 103 R +++P+ P + +K A+ Sbjct: 841 ----RRRGYMRPQVWPPVIAEDKEADQAH 865
>FIMREGULATRY#Escherichia coli: P pili regulatory PapB protein signature. Length = 104 Score = 28.8 bits (64), Expect = 0.006 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Query: 140 GQHSVPSDPVDELADTERVAVAVAGL--AEVFRLFAG------DRVVLQIIDGLANGLTA 191 H V S + R +V + G F L G DRV+L + D L G + Sbjct: 2 AHHEVISRSGNAFLLNIRESVLLPGSMSEMHFFLLIGISSIHSDRVILAMKDYLVGGHSR 61 Query: 192 REICRAYGISAIDYDTARRRMRR 214 +E+C Y ++ + T R+ R Sbjct: 62 KEVCEKYQMNNGYFSTTLGRLIR 84
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 46.9 bits (111), Expect = 7e-08 Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 57/244 (23%) Query: 143 RTVCRIDYADLSPPGFGTGFLVGPDLVLTNWHVVERVERAPENVRHDVANQLRFRFDLLE 202 V I + +G +VG D +LTN HVV+ H + L+ + Sbjct: 88 APVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDA--------THGDPHALKAFPSAIN 139 Query: 203 RAAAEDGRGRVALAQVSDGSPLLRTSPAGGMEVRGRSGEPSMTELDYALIRLTEDVGN-- 260 + +G ++ SGE + + ++ + +G Sbjct: 140 QDNYPNGGFTAE-------------------QITKYSGEGDLAIVKFSPNEQNKHIGEVV 180 Query: 261 DPV-----ASTALGETRGYIQLRPNMPLPTVNSALMALQHPMRGELQFAIGIALGPNQTG 315 P A T + + + P+ T +G++ + G A+ Sbjct: 181 KPATMSNNAETQVNQNITVTGYPGDKPVAT--------MWESKGKITYLKGEAM------ 226 Query: 316 SRAKHTVATQEGSSGSPVLDEYLSPIAMHNGTRFGTARERQAYNTAVPLSHIVADLRNSG 375 ++ ++T G+SGSPV +E I +H +N AV ++ V + Sbjct: 227 ---QYDLSTTGGNSGSPVFNEKNEVIGIH------WGGVPNEFNGAVFINENVRNFLKQN 277 Query: 376 ITEM 379 I ++ Sbjct: 278 IEDI 281
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 87.0 bits (215), Expect = 3e-22 Identities = 74/259 (28%), Positives = 108/259 (41%), Gaps = 27/259 (10%) Query: 4 LDGKVALITGAGGGLGEAYARLFAREGAAVVVNDLGGPRDGSGSDLSMAGQVAAAITAEG 63 ++GK+A ITGA G+GEA AR A +GA + D + +V +++ AE Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEK---------LEKVVSSLKAEA 56 Query: 64 GRAVANGADISTMAGGQSVFDDAIRHFGRADILVNNAGILRDQTFAKSSEADWDKVIQVH 123 A A AD+ A + R G DILVN AG+LR S+ +W+ V+ Sbjct: 57 RHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVN 116 Query: 124 LKGTFCCTLPVFRWMRDNGGGVIVNTSSTSGLIGNFGQSNYGAAKGGIWGLSNVLAVEGR 183 G F + V ++M D G IV S + + Y ++K + L +E Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 184 KYNIR----------------VWTLAPGALTRMTADLPRYKENP--GAALTPEGIAPAVL 225 +YNIR +W GA + L +K P IA AVL Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 226 YMVSHLSGDQTGKVLGVSG 244 ++VS +G T L V G Sbjct: 237 FLVSGQAGHITMHNLCVDG 255
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.5 bits (115), Expect = 2e-09 Identities = 14/68 (20%), Positives = 33/68 (48%) Query: 6 RSERSRKAALTAALTIIARDGPGRLTLDAIARESGLSKGGLMHQFPNKEAVLKALLEQQF 65 ++ +R+ L AL + ++ G +L IA+ +G+++G + F +K + + E Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 66 AHFDEFAR 73 ++ E Sbjct: 68 SNIGELEL 75
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 56.1 bits (135), Expect = 2e-11 Identities = 52/196 (26%), Positives = 73/196 (37%), Gaps = 34/196 (17%) Query: 46 FYIGGHLGGAFAGNNSLEGNNGR-----FLGGVQGGFDYQFAPNWVLGIEAQYSWMDRNT 100 +Y G LG + + NNG G GG YQ P +G E Y W+ R Sbjct: 28 WYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGG--YQVNPY--VGFEMGYDWLGRMP 83 Query: 101 TNFGFPGATVVSSTGANQLGSVTGRLGYTWGPAL-LYAK-GGYAWRDGNALGVNVAGVPA 158 +V + Q +T +LGY L +Y + GG WR NV G Sbjct: 84 YK-----GSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWR--ADTKSNVYG--- 133 Query: 159 GFTTSGNTKDGYTVGGGLEYMFAPNWSAKAEYQY-YNFGNTTFTGGPAPVVGSRFNSDEH 217 + +T GG+EY P + + EYQ+ N G+ G D Sbjct: 134 ---KNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIG---------TRPDNG 181 Query: 218 TVKVGVNYRFGWSGPT 233 + +GV+YRFG Sbjct: 182 MLSLGVSYRFGQGEAA 197
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.6 bits (64), Expect = 0.013 Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 6/94 (6%) Query: 55 ETERAVALTKQIQARTVQASEQLVEKTKGLEASQQESIDQLQSMQEELQSMRRLLAAQQA 114 T + K++ +A + A + + + L LL Q Sbjct: 196 STWQNQKYQKELNLDKKRAERL------TVLARINRYENLSRVEKSRLDDFSSLLHKQAI 249 Query: 115 DTKRLTDQVSTLKDTVDGLRQSFASTQASEQASA 148 + +Q + + V+ LR + + E Sbjct: 250 AKHAVLEQENKYVEAVNELRVYKSQLEQIESEIL 283
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 25.7 bits (56), Expect = 0.032 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 5/63 (7%) Query: 25 GFHHFHHGGFYHGFGPGF--ALGFGFGSPYYYGPTYYYPYTYEDLGGCYV---ARKRVRT 79 G+ +H GF + GP LG G Y P + Y+ LG Sbjct: 35 GWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYK 94 Query: 80 AHG 82 A G Sbjct: 95 AQG 97
>cloacin#Cloacin signature. Length = 551 Score = 30.5 bits (68), Expect = 0.003 Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 9/106 (8%) Query: 27 GGGGGGAGGGASAGGAASGGGAGGGAVSGTTTSGS---------AAGAAAGTAGGANAAT 77 GG G G GA + GG G V G + GS G+ +G G + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 78 TGIGASGIGTNGASSGAALSQPGAPGTNGTNSLGTAQSSGSGGSGS 123 G +G G+ +G LS AP G +L T + G S S Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSIS 108 Score = 30.5 bits (68), Expect = 0.003 Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 3/79 (3%) Query: 25 GGGGGGGGAGGGASAGGAASGGGAGGGAVSGTTTSGSAAGAAAGTAGGANAATTGIGASG 84 G GGG G G S+ GGG+G G G GS G G + TG S Sbjct: 27 LGVGGGASDGSGWSSENNPWGGGSGSGIHWG---GGSGHGNGGGNGNSGGGSGTGGNLSA 83 Query: 85 IGTNGASSGAALSQPGAPG 103 + A ALS PGA G Sbjct: 84 VAAPVAFGFPALSTPGAGG 102 Score = 29.3 bits (65), Expect = 0.008 Identities = 25/74 (33%), Positives = 30/74 (40%) Query: 26 GGGGGGGAGGGASAGGAASGGGAGGGAVSGTTTSGSAAGAAAGTAGGANAATTGIGASGI 85 G GGG+G G G SGGG+G G + A G A + GA I A + Sbjct: 53 GIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGAL 112 Query: 86 GTNGASSGAALSQP 99 A AAL P Sbjct: 113 SAAIADIMAALKGP 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 0.004 Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 23/139 (16%) Query: 198 LSLIRELQ-RDHGTAVLFITHDMGVVAEIADRVSVMRQGRLVETGPLDKILRSPEMDYTR 256 L+ ++ VL ++ + +G D + + ++ Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQ----NTFMTAIKASEKG------AYDYLPKPFDLTELI 112 Query: 257 NLLAAVPSLIPRPPRPETSEPVVLETNELGKVYRERSFIGKAREVVAA-QNVTLTLRKGR 315 ++ + R P + +G++ + + + ++ Sbjct: 113 GIIGRALAEPKRRPSKLEDDS-----------QDGMPLVGRSAAMQEIYRVLARLMQTDL 161 Query: 316 TLGIVGESGSGKSTVARCI 334 TL I GESG+GK VAR + Sbjct: 162 TLMITGESGTGKELVARAL 180
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.3 bits (102), Expect = 1e-06 Identities = 26/195 (13%), Positives = 53/195 (27%), Gaps = 32/195 (16%) Query: 1 MRPVLRRVVIA--SIALAVAAAVGWMAMPGPIPVETAVVTKGRFVATVEDDGKTRVRQRY 58 PV RR + I + A + VE G+ + Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVL---GQVEIVATANGKLTH---------SGRSK 97 Query: 59 VVAAPLAGRLGRLRFKAGDQVKADDVVATITPAPAPLLDPRARREVEERLGAAEANVERA 118 + + + K G+ V+ DV+ +T L A ++++ +A Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTA-----LGAEA------DTLKTQSSLLQA 146 Query: 119 KAVVARAQAQSAQAAADLARTMALAASGAATIQAKERAELTMRVAERDLRAAEYVDHAAQ 178 + R Q S + L + + L ++ Q Sbjct: 147 RLEQTRYQILSRSIELN-----KLPELKLPDEPYFQNVSEEEVLRLTSLIKEQF--STWQ 199 Query: 179 HELGQLRAMLARYGS 193 ++ Q L + + Sbjct: 200 NQKYQKELNLDKKRA 214 Score = 37.5 bits (87), Expect = 7e-05 Identities = 32/166 (19%), Positives = 55/166 (33%), Gaps = 18/166 (10%) Query: 125 AQAQSAQAAADLARTMALAASGAATIQAKERAELTMRVAERDLRAAEYVDHA-AQHELGQ 183 + + +A +L + A+ ++ + + +G Sbjct: 257 QENKYVEAVNELRVY---KSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL 313 Query: 184 LRAMLARYGSNTDADVPADSWNVTAPVGGLV--LKVTQESETMVQPGTALLDL-GDPHDL 240 L LA+ A V + APV V LKV E +V L+ + + L Sbjct: 314 LTLELAKNEERQQASV------IRAPVSVKVQQLKVHTEG-GVVTTAETLMVIVPEDDTL 366 Query: 241 EVVVDVLSTDAVEIAPGADVTID----RWGGAGRLPGRVRRVEPAA 282 EV V + D I G + I + G L G+V+ + A Sbjct: 367 EVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA 412
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.003 Identities = 15/22 (68%), Positives = 16/22 (72%) Query: 56 VVLLGPSGSGKSTLLNILGGLD 77 VVL G G GKSTL+N L GLD Sbjct: 599 VVLEGTGGIGKSTLINTLVGLD 620
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 35.5 bits (81), Expect = 3e-05 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 5/97 (5%) Query: 33 ADALTKVSPKA----QAKAKATATDFEAMFLNSMFAQMTSGVKGDGPFGDTPSTGVWRSM 88 A +L ++ KA A + A E MF+ M M + DG F + T ++ SM Sbjct: 15 AQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDGLF-SSEHTRLYTSM 73 Query: 89 LMEQYSKNFAKAGGVGLSNDVFRTLILQQAKSSGSGA 125 +Q ++ G+GL+ + + + +Q S Sbjct: 74 YDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTP 110
>FLAGELLIN#Flagellin signature. Length = 507 Score = 56.2 bits (135), Expect = 2e-10 Identities = 81/507 (15%), Positives = 160/507 (31%), Gaps = 16/507 (3%) Query: 17 LQNTASLLATTQNNLATGNKVNTALDNPTEFFTAQSLNNRASDIANLLDSIGNGVQVLQA 76 L + S L++ L++G ++N+A D+ A + + + +G+ + Q Sbjct: 17 LNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQT 76 Query: 77 ANTGLTSLQKLVDSAKSIASQVLQAPTGYTTKSSITSAVIPGATANNLLGSSSNNFVTGS 136 L + + + ++ Q + SI + + + + + + Sbjct: 77 TEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQT----QFN 132 Query: 137 TVNNDNLSSAVAITGSTRLSGTPSSTSNDLASSITTGDTLVVNGVVFTFVAGSVSAGTNI 196 V + + + I T + + D VNG V S+ N+ Sbjct: 133 GVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNV 192 Query: 197 GVGDTVSNLLAAIDSVTGATATPSSVTGGKIALATGTAQDLTVSGTALAKLGLTAATTTR 256 DT + + A + TA + A G Sbjct: 193 TGYDTYAVGANKYRVDVNSGAV----------VTDTTAPTVPDKVYVNAANGQLTTDDAE 242 Query: 257 NAPALSGQTLTIASTGGGVATNITFGTGASQISTLAQLNTALASNNLQASLSTTGQLTIL 316 N A+ T ++ G A I + + + + G+++ Sbjct: 243 NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTT 302 Query: 317 TTNEAASSTIGAVAGSSTASSMAFNGVTASTPVADTNSQTTRAGLIAQYNNVLAQINTTA 376 E + T+ + + A + + + N Q T + L+ + A Sbjct: 303 INGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDL--EA 360 Query: 377 QDASFNGINLLNGDTLKLVFNETGRSTLNITGVTFNSTGLGLSALVVGTDFLDSNSANKV 436 +A + + TL + + T G+S L+ S Sbjct: 361 NNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANP 420 Query: 437 LSTLNSASTAIRSEASSLGSNLSIVQIRQDFNKNLINVLQTGSSNLTLADTNEEAANSQA 496 L++++SA + + + SSLG+ + N + L + S + AD E +N Sbjct: 421 LASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSK 480 Query: 497 LSTRQSIAVSALALANQSQASVLQLLR 523 Q S LA ANQ +VL LLR Sbjct: 481 AQILQQAGTSVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 55.4 bits (133), Expect = 3e-10 Identities = 80/498 (16%), Positives = 154/498 (30%), Gaps = 7/498 (1%) Query: 17 LQSTAQLLATTQNNLATGKKVNSALDNPTNFFTAQGLDNRASDISNLLDGIGNGVQVLQA 76 L + L++ L++G ++NSA D+ A + ++ +G+ + Q Sbjct: 17 LNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQT 76 Query: 77 ANTGITSLQKLVDSAKSIANQVLQSSVGYSTKSNVTSAALAGATASSLIGASTTAVTGSV 136 + + + + ++ Q + S ++ + T V Sbjct: 77 TEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKV 136 Query: 137 VLNDNTSSAVAITGTTKLSGTPGTSSNDLASSITTGDTLVVNGTTFTFIAGTSSSGTNIG 196 + DN I T + D VNG + SS N+ Sbjct: 137 LSQDNQMK---IQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVT 193 Query: 197 VGDTVTNLLSTIQSATGVTSSITAGAITLTPPAAGLTLSGTSLAKLGLSAVGNSLSGQTL 256 DT + + + +T P + + L Sbjct: 194 GYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAV-DLFKT 252 Query: 257 TIAATGGGTATSITFGLGTGQVNSLNDLNTKLAANNLQASFDTSSGKISITTTNDAASAT 316 T + G A +I + G+ D + + D + ++TT + T Sbjct: 253 TKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK---VSTTINGEKVT 309 Query: 317 IGAIGGTAAASSQSFNGLTAAAPVADATAQSQRSSLVAQYNNVLQQINTTAADASFNGVN 376 + TA A++ L ++ V + Q + N + + A +A Sbjct: 310 LTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESK 369 Query: 377 LLNGDTLKLTFNETGKSSLSITGVTFNIAGLGLSNLTAGTDFLDNNSANKVLNVLNTASS 436 + K +L+ + + G+S L S L +++A S Sbjct: 370 ITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALS 429 Query: 437 TLRSEASTLGSNLSVVQIRQDFNKNLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAV 496 + + S+LG+ + N + L + S + AD E +N Q Sbjct: 430 KVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGT 489 Query: 497 SALSLANQSQASVLQLLR 514 S L+ ANQ +VL LLR Sbjct: 490 SVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 57.4 bits (138), Expect = 7e-11 Identities = 82/498 (16%), Positives = 159/498 (31%), Gaps = 7/498 (1%) Query: 19 LQSTAQLLATTQNNLSTGKKVNSALDNPTNFFTAQGLDNRASDISNLLDGIGNGVQVLQS 78 L + L++ LS+G ++NSA D+ A + ++ +G+ + Q+ Sbjct: 17 LNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQT 76 Query: 79 ANTGITSLQKLVDSAKSIANQVLQSAVGYSTKSNVTSAALTGATTTSLIGASSTAVTGSV 138 + + + + ++ +Q+ G ++ S++ S I S + Sbjct: 77 TEGALNEINNNLQRVRELS---VQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNG 133 Query: 139 VLNDNTSTAVAITGSTKLSGTPSTSSNDLASSITTGDTLVVNGTTFTFIAGTSSSGTNIG 198 V + + I T + + D VNG + SS N+ Sbjct: 134 VKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVT 193 Query: 199 VGDSVTNLLSTIQSATGVTSSITAGAITLTPPAAGLTLSGTSLAKLGLSAVGNSLSGQTL 258 D+ + + + +T P + + L Sbjct: 194 GYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAV-DLFKT 252 Query: 259 TIAATGGGTATSVTFGLGTGQVNSLNDLNAKLAANNLQASFDTATSKITISTTNDAASAT 318 T + G A ++ + G+ D + + D +STT + T Sbjct: 253 TKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK---VSTTINGEKVT 309 Query: 319 IGAIGGTAAASSQSFNGLTAAAPVADATAQSQRSSLVAQYNNVLAQINTTAADASFNGVN 378 + TA A++ L ++ V + Q + N + A +A Sbjct: 310 LTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESK 369 Query: 379 LLNGDTLKLTFNENGKSTLSITGVTFNTGGLGLSTLTAGTDFLDNNSANKVIGVLNTASS 438 + K TL+ + + G+STL S + +++A S Sbjct: 370 ITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALS 429 Query: 439 TLRNEASTLGSNLSVVQIRQDFNKNLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAV 498 + S+LG+ + N + L + S + AD E +N Q Sbjct: 430 KVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGT 489 Query: 499 SALSLANQSQASVLQLLR 516 S L+ ANQ +VL LLR Sbjct: 490 SVLAQANQVPQNVLSLLR 507
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 99.3 bits (247), Expect = 5e-24 Identities = 86/324 (26%), Positives = 149/324 (45%), Gaps = 24/324 (7%) Query: 1 MSGLRSTQAALSIISSNVANANTPGY----VAQNPNQIEVASGG-FGSTVMTTGVNRQLD 55 MSGL + QAAL+ S+N+++ N GY + +GG G+ V +GV R+ D Sbjct: 8 MSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGVQREYD 67 Query: 56 LFVQNQLRTETSGGAYADQIANILKQLQSVYGTPGGSGTLETSLNNFTTALQSLSNNPSN 115 F+ NQLR + + + ++ ++ T + +L T + +F T+LQ+L +N + Sbjct: 68 AFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQTLVSNAED 125 Query: 116 QSAQSVAMSAAQGLAQQLNATTKGIQTLRSNVEQDIGNSVTQANAAISQIATLNTQ---L 172 +A+ + ++GL Q T + ++ V IG SV Q N QIA+LN Q L Sbjct: 126 PAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLNDQISRL 185 Query: 173 QGLNTSDPLSATLQDQRDNAINTLSKYVDIRVVSDGSNGVSVFTNSGVQLVGAGLSSQFT 232 G+ L DQRD ++ L++ V + V ++ +G LV + Q Sbjct: 186 TGVGAGAS-PNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTARQLA 244 Query: 233 FSSPGTLDATSQYNSNPTKSGVGQLNIKLSNGVSLDVVSNNLLNSGQIAADLKLRDQTLV 292 + ++ ++P+++ V ++ N + LLN+G + L R Q L Sbjct: 245 -----AVPSS----ADPSRTTVAYVDGTAGNIEIPE----KLLNTGSLGGILTFRSQDLD 291 Query: 293 QAQTQVDQLAATMASALSDKTTAG 316 Q + + QLA A A + + AG Sbjct: 292 QTRNTLGQLALAFAEAFNTQHKAG 315 Score = 47.3 bits (112), Expect = 1e-07 Identities = 22/79 (27%), Positives = 38/79 (48%) Query: 530 TVSGYLQQVVSQQGSASTLATQLSQGQSVVVSTLKEKFNSTAGVNMDSEMSNLIQVQNTY 589 + + +VS G+ + S Q VV+ L + S +GVN+D E NL + Q Y Sbjct: 466 SFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYY 525 Query: 590 SANAHIMSVVQSMMQSLLQ 608 ANA ++ ++ +L+ Sbjct: 526 LANAQVLQTANAIFDALIN 544
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 37.6 bits (87), Expect = 1e-04 Identities = 15/47 (31%), Positives = 26/47 (55%) Query: 553 ISGGSLEGSNTDIADEFTKLIVTQQAYSANTKVITTANSMVQDLLNV 599 +S S ++ +E+ L QQ Y AN +V+ TAN++ L+N+ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 29.5 bits (66), Expect = 0.046 Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 5 DAMNTSVSGLSAQSFALQNISGNIANASTVGYK 37 +N ++SGL+A AL S NI++ + GY Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYT 34
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 33.6 bits (77), Expect = 0.004 Identities = 88/401 (21%), Positives = 141/401 (35%), Gaps = 60/401 (14%) Query: 39 GAVAAHGDALVTVAGAVFIFPFFILSGLGGQLADRYVKGVVARRLKFAEIFAAGFAALGF 98 V AH L+ A++ F + + G L+DR+ + V L + AA A+ Sbjct: 39 NDVTAHYGILL----ALYALMQFACAPVLGALSDRFGRRPV---LLVSLAGAAVDYAIMA 91 Query: 99 FLHSIPLLFVALGMFGVIAALFGPVKFAMLPDQLTVGELATGNALVEGATFMAILIGTIA 158 + +L++ + G+ A G V A + D E A + ++ G + Sbjct: 92 TAPFLWVLYIGRIVAGITGAT-GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 159 GGQLVSGSSHMGWVALAVI-GLAVISWASASRIPHTAPSAPDLRITANPWTSTSHLLKSL 217 GG + S H + A A + GL ++ H P R NP S Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASF------- 203 Query: 218 YAAPRLWDGMVIVSWF-------WLVGAVVLSLLPALVKDVVGGTEGVVTLCLAIFAIGI 270 R GM +V+ LVG V +L +D + + LA F I Sbjct: 204 ----RWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGI-- 257 Query: 271 AIGSLFAAHLSHVRPNLA--LVPIGAILMGVLGLDLSWAIATTETAKGLTPLGFIGSWAG 328 + SL A ++ +A L A+++G++ G L F G Sbjct: 258 -LHSLAQAMIT---GPVAARLGERRALMLGMIA-----------DGTGYILLAFATR--G 300 Query: 329 ARMLIDFALFAFGGGLFVVPAFAAVQAWSEPDERARIIAAGNV-LQAAFMVVGSLAVAGL 387 L A GG +PA A+ + +ER + L + +VG L + Sbjct: 301 WMAFPIMVLLASGG--IGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Query: 388 QAAGVSI----AWIFFGLGLASFGAVWFVLNK--WGKEGVR 422 AA ++ AWI G A + L + W G R Sbjct: 359 YAASITTWNGWAWI---AGAALYLLCLPALRRGLWSGAGQR 396
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.0 bits (65), Expect = 0.011 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 28 SAVIPWAVFTRYVLNSAA--SWPEPMAVLLTILLTFIGAAAG 67 A++ + ++ +A SW P++V+L + L +G Sbjct: 873 PALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.8 bits (69), Expect = 0.009 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 15/122 (12%) Query: 155 ENAGPLKDTI--ANLRTFSDGLARNTGKLDSIVSGLEKMTGGGAPAQKVTYDLRAPRDFG 212 + + ++ A RT+++ + NT + + + + G AP V Sbjct: 358 SSTVAIDHSLSLAGERTWAETMGLNTADTARLNANIRYVNTGTAPIYNVLPTTSLVLGKN 417 Query: 213 PIAKTIKGQLAIPEPTAVAMLQTQRILFSPAKDYPGFGDALWADSIPKLLQARLIDAFEN 272 TIK + Q +IL +P YP A A + + I N Sbjct: 418 QTLATIKAKEN----------QLSQIL-APNNYYPSKNLAPIALNAQDDFSSTPITM--N 464 Query: 273 YD 274 Y+ Sbjct: 465 YN 466
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.1 bits (78), Expect = 0.001 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 771 LRFFAPMKEFTHEFIARLTQLDYSRAMAFVALDETTNELVGVVRIHSDSVYESGEYA--- 827 RF P + + ++ ++ AF+ E N +G ++I S+ YA Sbjct: 40 ERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLE--NNCIGRIKIRSNW----NGYALIE 93 Query: 828 -ILLRSDLKGRGLGWALMQLIIEYAKAEDLKMISGDVLQENIVMLEMCRNLGF 879 I + D + +G+G AL+ IE+AK + + NI F Sbjct: 94 DIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>cloacin#Cloacin signature. Length = 551 Score = 35.5 bits (81), Expect = 3e-04 Identities = 27/88 (30%), Positives = 36/88 (40%) Query: 191 NGGAGGSGSGGATSNGGVASGGDVNQTGSYGAASSGAGSGPQAALIGGAGAGSAFGGGTP 250 +GG G + GA S G +GG GA+ S GG+G+G +GGG+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 251 GGWPNAGGLSATSFGAGGGGAGGPAAAA 278 G G S G GG + A A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 33.9 bits (77), Expect = 8e-04 Identities = 38/121 (31%), Positives = 43/121 (35%), Gaps = 21/121 (17%) Query: 155 MVGGGGGGGGSANTSANAGAGGAGGNTTFGTSFLAANGGA--------------GGSGSG 200 M GG G G N GA GN G + L GGA GGSGSG Sbjct: 1 MSGGDGRG-------HNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG 53 Query: 201 GATSNGGVASGGDVNQTGSYGAASSGAGSGPQAALIGGAGAGSAFGGGTPGGWPNAGGLS 260 G G N G+ + G S A + G A S G G +AG LS Sbjct: 54 IHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Query: 261 A 261 A Sbjct: 114 A 114 Score = 32.4 bits (73), Expect = 0.002 Identities = 34/133 (25%), Positives = 47/133 (35%), Gaps = 20/133 (15%) Query: 198 GSGGATSNGGVASGGDVNQTGSYGAASSGAGSGPQAALIGGAGAGSAFGGGTPGGWPNAG 257 G G + G ++ G++N + GA G G + + GG G + G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGS------GWSSENNPWGGGSGSGIHWG 57 Query: 258 GLSATSFGAGGGGAGGPAAAAGYSGGGGASGGYCEKLIASPAASYAFAVGAGGTAGTAGS 317 G S G G G +GG G GG S + AA AF A T G G Sbjct: 58 GGSGHGNGGGNGNSGG-----GSGTGGNLS---------AVAAPVAFGFPALSTPGAGGL 103 Query: 318 GGTTGSSGGSGVI 330 + + S I Sbjct: 104 AVSISAGALSAAI 116
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 28.6 bits (64), Expect = 0.008 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%) Query: 64 IGTITGGQAAGTFRFIGGSDPSWTAAGGSIGPFQYAVLYNATSAT 108 + + G + GS + T+ +GP + +Y A+ T Sbjct: 324 LSRQVDEERQG---QLQGSLAALTSLTSIVGPLLFTAIYAASITT 365
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 39.9 bits (93), Expect = 2e-05 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 1/132 (0%) Query: 53 DFGTDASGVAMLASSYFWGYTLMQIPAGLLVDRYGVKRVVLCSMAASVVGSLAFALSPTL 112 DF + + +++ +++ G L D+ G+KR++L + + GS+ + + Sbjct: 43 DFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSF 102 Query: 113 FDVFI-ARVIVACGDALVFTALLKLVAQSFTDERFGLMSGISQVSGYAGGVIATTPLAAA 171 F + I AR I G A ++ +VA+ E G G+ G + Sbjct: 103 FSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMI 162 Query: 172 VSGFGWRACFFF 183 W Sbjct: 163 AHYIHWSYLLLI 174
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.010 Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 44 CVVLSGPSGAGKSSILKMIFGNY 66 VVL G G GKS+++ + G Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.007 Identities = 11/21 (52%), Positives = 14/21 (66%) Query: 37 VVVGPSGCGKSTMLRILAGLD 57 V+ G G GKST++ L GLD Sbjct: 600 VLEGTGGIGKSTLINTLVGLD 620
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 4e-04 Identities = 49/233 (21%), Positives = 83/233 (35%), Gaps = 29/233 (12%) Query: 128 GEKSFEPGLLARANRGFLYIDEVNLLEDHLVDLLLDVAASGENVVERDG--LSIRHPARL 185 G ++ G +A G L++DE+ + LL V GE G IR R+ Sbjct: 218 GAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGE--YTTVGGRTPIRSDVRI 275 Query: 186 VLVGTGNPE----EGELRPQLLDRFGLSVEVKTPADLPTRIEVIKRRDAFETDPAAFVAH 241 V + + +G R L R + V ++ P L R E D V H Sbjct: 276 VAATNKDLKQSINQGLFREDLYYRLNV-VPLRLPP-LRDRAE----------DIPDLVRH 323 Query: 242 WEKEEAKQRKRILA-AREHIASVKVAD-----RELENAARLCMALGTDGLRGELTL---M 292 + ++ K+ + +E + +K RELEN R AL + + + Sbjct: 324 FVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENEL 383 Query: 293 RAARAAAALDGAKAVDDGHLKTVAPMALRHRLRRNPLDDSGSSVRVERALNEL 345 R+ + ++ A A + A + + D S +R L E+ Sbjct: 384 RSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEM 436
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 35.2 bits (81), Expect = 4e-04 Identities = 64/380 (16%), Positives = 120/380 (31%), Gaps = 58/380 (15%) Query: 44 VVLPTVQAEFAASRGAVSLAYTLTMFGFGLGGVIVGRITDRFGIVTAMALSIACTAAAYL 103 V LP + +F + + T M F +G + G+++D+ GI + I + Sbjct: 35 VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV 94 Query: 104 LAGASVTLWQFQ-AVYFLVGLGSSVTFAPLMAEASHWFVR-YRGLAVTIVAS-------- 153 + + + F+ G G++ A +M + + + RG A ++ S Sbjct: 95 IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 154 GNYVAGTI-----WPPLVNWGVQQI-------------GWRASHVALGIFSAVTMSALLL 195 G + G I W L+ + I H + +++ + Sbjct: 155 GPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFF 214 Query: 196 LLRARMGGAG------------AQDHAHAAPPQLALPISTN---------ALTVLLSVAA 234 +L + P + + N + +VA Sbjct: 215 MLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAG 274 Query: 235 IACCVAMAMPQVHIVAYCGDLGYGVAAGAQMLSLMMALGILSRIGSGFLADRVGGMRTLL 294 V M VH L + M++ I IG G L DR G + L Sbjct: 275 FVSMVPYMMKDVH------QLSTAEIGSVIIFPGTMSVIIFGYIG-GILVDRRGPLYVLN 327 Query: 295 IGSLAQGFALLFYLFFDGLTSLYLISGMFGLFQG--GIVPSYAIIVREAMPAREAATRVG 352 IG + L F TS ++ + + G + IV ++ +EA + Sbjct: 328 IGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMS 387 Query: 353 IVIFASVFGMSFGGWVSGVI 372 ++ F S G + G + Sbjct: 388 LLNFTSFLSEGTGIAIVGGL 407
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.1 bits (75), Expect = 6e-04 Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 1/39 (2%) Query: 7 AQQAPPPAAPPYQAAPPYQQP-APPYQQPAPPPRPAPSP 44 A+QA A A Q P A P + P AP Sbjct: 449 AKQAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQA 487
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 46.2 bits (109), Expect = 2e-07 Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 14/249 (5%) Query: 81 QLADLGKKTDAINRMKIELGEKNAAIFALEAREKALKDQLRATEEEFAAKTEALRAAEQA 140 + ADL K + K + A +A A K L E + A A + Sbjct: 121 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 180 Query: 141 LKDKQAELVRLTTELNDKSLLADSRQVELVSVRAQVEELRTRVAEAEKEFAATQARLALE 200 L+ ++A L EL A + + A+++ L A A + L Sbjct: 181 LEAEKAALEARQAELEKALEGAMN---FSTADSAKIKTLEAEKAALAARKADLEKALEGA 237 Query: 201 RDESDTATKALNDARARVENLSQRVTELDRQLIVQVKEAEMLATRVADLEGRLATQGKLL 260 + S + + A L R EL++ L + + + ++ LE A Sbjct: 238 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEK 297 Query: 261 AEREFENNQLREANAAADRALKELRDEIAGFGSGKSAALERLKSEKAALEEQLQAARDER 320 A+ E ++ L + R L R+ L++E LEEQ + + R Sbjct: 298 ADLEHQSQVLNANRQSLRRDLDASREAKKQ-----------LEAEHQKLEEQNKISEASR 346 Query: 321 TKLQREMNA 329 L+R+++A Sbjct: 347 QSLRRDLDA 355 Score = 40.4 bits (94), Expect = 1e-05 Identities = 60/354 (16%), Positives = 122/354 (34%), Gaps = 11/354 (3%) Query: 47 AEIQADKDQLRAEFAMSARRLELSVDALKNKATSQLADLGKKTDAINRMKIELGEKNAAI 106 A +AD ++ + + L+ + + A + A+ +A I Sbjct: 154 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 213 Query: 107 FALEAREKALKDQLRATEEEFAAKTEALRAAEQALKDKQAELVRLTTELNDKSLLADSRQ 166 LEA + AL + E+ A +K +AE L + + Sbjct: 214 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 273 Query: 167 VELVSVRAQVEELRTRVAEAEKEFAATQARLALERDESDTATKALNDARARVENLSQRVT 226 + A+++ L A E E A + + + + + L+ +R + L Sbjct: 274 NFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQ 333 Query: 227 ELDRQLIVQVKEAEMLATRVADLEGRLATQGKLLAEREFENNQLREANAAADRALKELRD 286 +L+ Q ++ EA L L + + E E+ +L E N ++ + + LR Sbjct: 334 KLEEQN--KISEASR-----QSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRR 386 Query: 287 EIAGFGSGKSAALERLKSEKAALEEQLQAARDERTKLQREMNAIQQQAESTWAQERMENA 346 ++ A ++++ +L A +L+ +++ A+ E Sbjct: 387 DLDA----SREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAK 442 Query: 347 LLRERINDIAAEVAKLAMQIEGPNSTIEAMLAAEPVSAKPANANGAPAPAAAGA 400 L+E++ A E+AKL + T +A + V K P A Sbjct: 443 ALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKA 496 Score = 39.7 bits (92), Expect = 2e-05 Identities = 39/263 (14%), Positives = 88/263 (33%) Query: 74 LKNKATSQLADLGKKTDAINRMKIELGEKNAAIFALEAREKALKDQLRATEEEFAAKTEA 133 +K + L K ++ L + N + + K + + E A+K + Sbjct: 58 RADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQE 117 Query: 134 LRAAEQALKDKQAELVRLTTELNDKSLLADSRQVELVSVRAQVEELRTRVAEAEKEFAAT 193 L A + L+ + +T + K ++ + L + +A +E+ +A Sbjct: 118 LEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK 177 Query: 194 QARLALERDESDTATKALNDARARVENLSQRVTELDRQLIVQVKEAEMLATRVADLEGRL 253 L E+ + L A N S + + L + + Sbjct: 178 IKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGA 237 Query: 254 ATQGKLLAEREFENNQLREANAAADRALKELRDEIAGFGSGKSAALERLKSEKAALEEQL 313 + + + A A L++ + F + SA ++ L++EKAALE + Sbjct: 238 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEK 297 Query: 314 QAARDERTKLQREMNAIQQQAES 336 + L ++++ ++ Sbjct: 298 ADLEHQSQVLNANRQSLRRDLDA 320
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.4 bits (66), Expect = 0.034 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 6/80 (7%) Query: 102 PLGTNTQQIATMAALQAALANLVSSAPATLDTLQELANALGNDPNYATTVTTALSNRLRV 161 P Q ++ + +L L +S +L L+ +P+ + L + L+ Sbjct: 95 PELEQKQNVSELLSL------LSNSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKG 148 Query: 162 DAAQGLTAAQKAQAIANLAL 181 + QA+ ++A Sbjct: 149 RPELAHLSHLVEQALVSMAE 168
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.5 bits (66), Expect = 0.034 Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 34/164 (20%) Query: 124 RQGAASGLISIPLLSNV-----AYLAAENAAASIAQTLPTAISTAGQPAAAV-------- 170 + AA ++ +L NV Y+ A+ AA ++ + A A A+ Sbjct: 267 TKAAAGVELTTKVLGNVGKGISQYIIAQRAAQGLSTSAAAAGLIASAVTLAISPLSFLSI 326 Query: 171 ------AAVTDTLSQAATAL---------DLVRQSYPIDPAVSA--TVRDAIAPLVASFA 213 A + SQ L +++ ID +++ TV +++ +++ A Sbjct: 327 ADKFKRANKIEEYSQRFKKLGYDGDSLLAAFHKETGAIDASLTTISTVLASVSSGISAAA 386 Query: 214 TSITNEAAPGADASAAVSSLVGLVRTTMDAMPAASATRAALELA 257 T+ + GA SA V ++ G++ ++A A A ++A Sbjct: 387 TT----SLVGAPVSALVGAVTGIISGILEASKQAMFEHVASKMA 426
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 35.4 bits (81), Expect = 8e-04 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 8/137 (5%) Query: 159 LTAGEAVTQGFATKQIDEPATAMAAYDYRVYASAPEGLPVRVRDESNAAIAATKRESKTM 218 ++AGEA+ G A + + EG + + A K + + Sbjct: 240 ISAGEALGIGDILYGTRYAIDKAAMRN--IAPLPAEGKFAVIGGLGSVA-GFEKNTREAV 296 Query: 219 TPEEIAAANAAANATAAVVVPGTAAAPAAPVAAAAPAAEAGKSWAAGFYASAGNSGLTLA 278 NAA A A AA VA A AA+ GK+ +G +A + L L+ Sbjct: 297 DRWIQENPNAAETVEAVF-----NVAAAAKVAKLAKAAKPGKAAVSGDFADSYKKKLALS 351 Query: 279 DLNTIVAASASHEQAKD 295 D + +A + +A D Sbjct: 352 DSARQLYQNAKYREALD 368
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 29.4 bits (65), Expect = 0.035 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%) Query: 565 GWRLRGNQDNHFLDCRIYNMAIADHLGLSRMTADEWKILARDRAPAI 611 GWRLRG+ H C++ AD L A W+ L R AP + Sbjct: 185 GWRLRGDPTLHPGGCKVS----ADEGDLDASVATRWQELCRLAAPGV 227
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 27.2 bits (60), Expect = 0.011 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 13/67 (19%) Query: 30 ENTMSLLAARKAERDAILADLLNALEVLRRQRGVAIAIEAGAEHLAELDAEEAAYFARAR 89 T +L+ + L ++ L++ R Q + +EA +AE+ + Sbjct: 316 GQTNALIVTAAPDVMNDLERVIAQLDIRRPQ----VLVEA---IIAEVQDAD------GL 362 Query: 90 ALGAAWA 96 LG WA Sbjct: 363 NLGIQWA 369
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 38.6 bits (90), Expect = 5e-05 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 14/72 (19%) Query: 5 DLIIRGGRVLDPETKLDATADVAVKDGAIAAVGD------------IAGVADQVIDAAGL 52 D +I +LD + AD+ +KDG IAA+G I G +VI G Sbjct: 69 DTVITNALILDHWGIV--KADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGK 126 Query: 53 AVVPGFIDLHAH 64 V G +D H H Sbjct: 127 IVTAGGMDSHIH 138
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 125 bits (314), Expect = 1e-36 Identities = 81/267 (30%), Positives = 124/267 (46%), Gaps = 16/267 (5%) Query: 9 VRAPRLAGHYALVTGAAQGIGRAIAVRFAEEGAHVAINFGGPSPSGDETLALVQAASAAH 68 + A + G A +TGAAQGIG A+A A +GAH+A + ++ +V + A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIA----AVDYNPEKLEKVVSSLKAE- 55 Query: 69 GHGARDHFTVKADIGVEADIAAMFETVLKRWPQLDCLVNNAGFQRESPSEALDVATYRAI 128 AR AD+ A I + + + +D LVN AG R +L + A Sbjct: 56 ---ARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEAT 112 Query: 129 LEVNLNGAVLCARHALAHFVARGGGNIINTSSVHQIIPKPGYLAYSISKSAMAGLTRTLA 188 VN G +R + + R G+I+ S +P+ AY+ SK+A T+ L Sbjct: 113 FSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLG 172 Query: 189 LEFAGRGIRVNSVGPGAVDTPIN-AAWTGD----PVKRGVVESH---IPMGRVASPEEIA 240 LE A IR N V PG+ +T + + W + V +G +E+ IP+ ++A P +IA Sbjct: 173 LELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIA 232 Query: 241 GVFAFLASSEASYITGQTIYACGGITL 267 FL S +A +IT + GG TL Sbjct: 233 DAVLFLVSGQAGHITMHNLCVDGGATL 259
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 5e-05 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 8/48 (16%) Query: 404 LIRNAIDHGIEDAGRRAAAGKPAQGRIELSAVHAGAQVLVTVSDNGGG 451 L+ N I HGI P G+I L V + V + G Sbjct: 263 LVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEVENTGSL 302
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.3 bits (211), Expect = 8e-23 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 2 AIVLTVDDSPSIRQMVKVTLEPAGHQVIEAGDGVQGLAKAQTSRPDIVITDLNMPVMNGL 61 A +L DD +IR ++ L AG+ V + D+V+TD+ MP N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 ELIRALRKERTLTGMPILFLTTESNDAVKQEAKSAGATGWITKPFKPEQLLTVVGK 117 +L+ ++K R +P+L ++ ++ +A GA ++ KPF +L+ ++G+ Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 34.6 bits (79), Expect = 3e-04 Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 52/187 (27%) Query: 50 IITNRHVFQGAIQS----DFHYTMADAQGRSTGRHERFSIYDFGKAWIDHPDPDVDLALL 105 ++TN+HV + + G I + + DLA++ Sbjct: 114 LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKY--------SGEGDLAIV 165 Query: 106 PTQPLFEQLEKVGRRPFYINLSQGIIASPEMLSTLDAI-EEITMIGYPNG-----LWDDV 159 K ++ + + + + + + IT+ GYP +W+ Sbjct: 166 ----------KFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESK 215 Query: 160 NNLPIVR-RGITATSAAREYRGKKQFLIDAACFPGSSGSPVF--------IYNSGSFSGL 210 + ++ + D + G+SGSPVF I+ G + Sbjct: 216 GKITYLKGEAMQ---------------YDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEF 260 Query: 211 HLGTRLT 217 + + Sbjct: 261 NGAVFIN 267
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.9 bits (140), Expect = 6e-13 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 8/129 (6%) Query: 8 RATVLIVEDDPTQREMIALLLEESDYDVIACESAEAAELVLNKPGHRIVLMMTDVNLAGR 67 AT+L+ +DD R ++ L + YDV +A + +V+ TDV + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVV--TDVVMPD- 59 Query: 68 MSGVELAHIARARHPHINVVVTSGRPLSQPLPGGTK-----FWSKPWAPLDVLREAEVTL 122 + +L + P + V+V S + ++ + KP+ +++ L Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 123 ERAPEMARR 131 + Sbjct: 120 AEPKRRPSK 128
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 81.6 bits (201), Expect = 2e-20 Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 2/194 (1%) Query: 3 AISGAAAAVTGASSGIGRALAQELAARGCDLALADRDEAGLASVASELATTGRKVTTHRL 62 I G A +TGA+ GIG A+A+ LA++G +A D + L V S L R Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 63 DVSDGQAIGQFAEDATRAHPSLNIVINNAGVALFGGFNEIDQAEMEWLFNINFWGVVHGT 122 DV D AI + R ++I++N AGV G + + E E F++N GV + + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 123 RAFLPHLARQRAAHIVNLSSIFGIIAPPGQSAYAAAKFAVRGFSESLRHELATANSPIRL 182 R+ ++ +R+ IV + S + +AYA++K A F++ L ELA N IR Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN--IRC 182 Query: 183 SVVHPGGVATAIAR 196 ++V PG T + Sbjct: 183 NIVSPGSTETDMQW 196
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.006 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 6/86 (6%) Query: 61 DGIALIDHWRGASIGHPVLAAGTSCTKQQIVDAIDHGADDYISLPCGLMELATRLSAMLR 120 + L+ + A PVL T + A + GA DY+ P L T L ++ Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDL----TELIGIIG 116 Query: 121 RCRSARKLIRTIDHVSVDEDQMQVIV 146 R + K R + D +V Sbjct: 117 RALAEPK--RRPSKLEDDSQDGMPLV 140
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 46.5 bits (110), Expect = 6e-09 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 2/104 (1%) Query: 21 PPFAAAENSKELLKGTWAQEIVARLRAERRYPLQA--SGQGGHARVMFHLDGAGHLISVA 78 P + A + + A A R + +YP +A G +V F + G + +V Sbjct: 137 PTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQ 196 Query: 79 LMESTGDALLDREALAMVERAQPFPSPPGVLVDDDLTFVLPVVF 122 ++ + + +RE + R + P PG + ++ F + Sbjct: 197 ILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTT 240
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 43.7 bits (103), Expect = 4e-07 Identities = 19/133 (14%), Positives = 49/133 (36%), Gaps = 5/133 (3%) Query: 124 ATDVLIIEDETFIAMDLESLIKNLGHNVIGVARTHADAVALAKNKKPGLILADIQLADGS 183 +L+ +D+ I L + G++V + A L++ D+ + D Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNA-ATLWRWIAAGDGDLVVTDVVMPDE- 60 Query: 184 SGLDAVNELL-RTFEVPVVFITAY--PERFLTGERPEPAFLISKPFQPAMVSAVASQALF 240 + D + + ++PV+ ++A + + KPF + + +AL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 241 FQRNSRNRMPKPA 253 + +++ + Sbjct: 121 EPKRRPSKLEDDS 133
>BACSURFANTGN#Yersinia/Haemophilus virulence surface antigen signature. Length = 322 Score = 25.1 bits (54), Expect = 0.038 Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 15/82 (18%) Query: 3 DVKSQASKNAAPRKPGGLNAEIQSRIGH--QLRAMYDD-------------VVRQGVPDR 47 + + K L ++ + I H R+M D + R Sbjct: 30 VIGAHRVKVETALSHSNLQKKLSATIKHNQSGRSMLDRKLTSDGKANQRSSFTFSMIMYR 89 Query: 48 FTDLIRKLDVPAAQSHVENGGG 69 + VPA + V N GG Sbjct: 90 MIHFVLSTRVPAVRESVANYGG 111
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 42.0 bits (98), Expect = 9e-07 Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 23/202 (11%) Query: 2 SASIKDSVVVITGATGAIATALIAELLARGAAKIYAA----------ARDVSGLAATGKI 51 + I+ + ITGA I A +A LA A I A + A + Sbjct: 3 AKGIEGKIAFITGAAQGIGEA-VARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 52 VPLKLDVTSDADAAAAALQASDATL--LINNAGVNHNTAFMLAPDLAFAKEEIE----IN 105 P + ++ D A ++ + L+N AGV + + EE E +N Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLR-----PGLIHSLSDEEWEATFSVN 116 Query: 106 YLAPLRLTRAFAPVLI-RNHGAVLNILTILARVNLPLMGSYCASKAAALSLTQGLRGELT 164 +R+ + ++ R G+++ + + A V M +Y +SKAAA+ T+ L EL Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 165 PKGVRIVGALPGAVDTRMTAGL 186 +R PG+ +T M L Sbjct: 177 EYNIRCNIVSPGSTETDMQWSL 198
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.8 bits (67), Expect = 0.011 Identities = 10/37 (27%), Positives = 19/37 (51%) Query: 26 PVMRDVIKSVDLAVPRGAVLGLVGESGSGKTTLGRLL 62 M+++ + + + L + GESG+GK + R L Sbjct: 144 AAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 117 bits (294), Expect = 8e-34 Identities = 79/267 (29%), Positives = 127/267 (47%), Gaps = 20/267 (7%) Query: 8 AVKDKKALVTGGASGIGLAIAEGLAENGAVVAIVDRNKEALEREIARLISRDLRVSGVHG 67 ++ K A +TG A GIG A+A LA GA +A VD N E LE+ ++ L + Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 68 DVA-ADGFDATIEAAIAALGGVDIVFANAGISGGYGPGVGGNDAGLLQNIDLKSWNHTIG 126 DV + D +G +DI+ AG+ GL+ ++ + W T Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVL----------RPGLIHSLSDEEWEATFS 114 Query: 127 VNLTGIVSTLKATIPTLKEQRSGKIVVTASIAGLRANPSIGYSYTASKAALVLLIKELAL 186 VN TG+ + ++ + ++RSG IV S S+ +Y +SKAA V+ K L L Sbjct: 115 VNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMA-AYASSKAAAVMFTKCLGL 173 Query: 187 ELAPFGVQVNGLAPGPFKTNINGGRFFDPDNAAREAA--------TVPLGRLAQPHEIKG 238 ELA + ++ N ++PG +T++ + D + A + +PL +LA+P +I Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 239 LALLLSSDASSYITGAVIPIDGGKTAG 265 L L S + +IT + +DGG T G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGGATLG 260
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.2 bits (65), Expect = 0.016 Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 8 ISLSRLMALQRRLDVAANNVANSQTTGY 35 ++S L A Q L+ A+NN+++ GY Sbjct: 6 NAMSGLNAAQAALNTASNNISSYNVAGY 33
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 760 bits (1963), Expect = 0.0 Identities = 227/1055 (21%), Positives = 425/1055 (40%), Gaps = 67/1055 (6%) Query: 6 VMAAFGAWNFTRLPIDAVPDITNVQIQINSRAPGYSPLEVEQRITFPIETAMGGLPHLDS 65 ++ GA +LP+ P I + +++ PG V+ +T IE M G+ +L Sbjct: 18 ILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNMNGIDNLMY 77 Query: 66 TRSQS-RYGLSQVTIIFKDGTDIYFARQLVNERIQQVKDQLPPSIETAMGPISTGLGEIY 124 S S G +T+ F+ GTD A+ V ++Q LP ++ + Sbjct: 78 MSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYL 137 Query: 125 LFTVEAKPEARKTGGDEYTPSDLRTIQDWIIKPQLRNVPGVIEVNTIGGFERQFHVLPDP 184 + + T D+ +K L + GV +V G + + D Sbjct: 138 MVA------GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-QYAMRIWLDA 190 Query: 185 AQLMAYKLSFREVMTALAANNANVGAGYI------ERNGEQYLVRTPGQVANVEEIKQIV 238 L YKL+ +V+ L N + AG + + + N EE ++ Sbjct: 191 DLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVT 250 Query: 239 I-GSRHGVPVRVMDVADVKEGKDLRTGAATVDGKEVVLGTAMLLIGDNSRTVAQRVAAKL 297 + + G VR+ DVA V+ G + A ++GK L G N+ A+ + AKL Sbjct: 251 LRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKL 310 Query: 298 KEIGRSLPEGVIARAVYDRTKLVEATVATVEKNLVEGALLVIVILFLILGNFKAAIATAF 357 E+ P+G+ YD T V+ ++ V K L E +LV ++++L L N +A + Sbjct: 311 AELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTI 370 Query: 358 VIPLSMLFTITGMVENKVSANLMSLG--AIDFGIIIDGAVIIVENCLRLLAEEQTRQGRV 415 +P+ +L T + S N +++ + G+++D A+++VEN R++ E++ Sbjct: 371 AVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLP---- 426 Query: 416 LDRQERFETILTASKEVIGPSLFGTLIIGVVYLPILTLTGVEGKMFTPMALTVLMALTGA 475 E + ++ G + +++ V++P+ G G ++ ++T++ A+ + Sbjct: 427 -----PKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 476 SILSLTFVPAAVALLVTGKVSEHE-------NWFMRGARYV---YTPLLAASIRNRWGVA 525 +++L PA A L+ +EH WF + YT + + + Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 526 GIAVLLMAVCGIAASRMGGEFIPSLDEGDVALQAIRIPGTSLTQSLEMQAMLERRLLKIP 585 I L++A + R+ F+P D+G G + ++ ++ + LK Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 586 EVREVFARTGTAEVATDLMPPSTSDGYVMLKPRKEWPDPEKPKASVVSEIQEAAEEIP-G 644 + V + + + +V LKP +E E +V+ + +I G Sbjct: 602 KA-NVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 645 NVYEISQPIQQRFNELISGVRSDVG-VKIFGDDLDVLVQSAAKVQAVLQGVQGA-ADVKT 702 V + P EL + D + G D L Q+ ++ + + V+ Sbjct: 661 FVIPFNMP---AIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 703 EQASGLPVLTVKLNRQALSRYGISVGDVQNLVEIAVGGKNSGMVFEGDRRFNIVVRLPEH 762 ++++++ G+S+ D+ + A+GG + R + V+ Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 763 LRSDISALKALPVPLPPLESQAKPVTALWSNSPLSQIRYVPLSELAQIDVAPGPNQISRE 822 R + L V E VP S G ++ R Sbjct: 778 FRMLPEDVDKLYVRSANGEM-------------------VPFSAFTTSHWVYGSPRLERY 818 Query: 823 NGKRRIVVTANVRGRDLGSFVADAQEQVE-AKVKLPAGYWIGWGGQFEQLVSATQRLTIV 881 NG + + G+ DA +E KLPAG W G Q + + + Sbjct: 819 NGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPAL 875 Query: 882 VPVALLLIFLLLFMSLGSMPDALLVFSGVPLALTGGIIALLLRGIPLSISAGIGFIALSG 941 V ++ +++FL L S + V VPL + G ++A L + +G + G Sbjct: 876 VAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIG 935 Query: 942 VAVLNGLVIITFI-ERLRSEGKNVIDAVREGSLTRLRPVLMTALVASLGFVPMAIATGAG 1000 ++ N ++I+ F + + EGK V++A RLRP+LMT+L LG +P+AI+ GAG Sbjct: 936 LSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAG 995 Query: 1001 AEVQRPLATVVIGGIISSTILTLLVLPALYVLFRR 1035 + Q + V+GG++S+T+L + +P +V+ RR Sbjct: 996 SGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030 Score = 78.0 bits (192), Expect = 1e-16 Identities = 102/536 (19%), Positives = 206/536 (38%), Gaps = 57/536 (10%) Query: 517 SIRNRWGVAGIAVLLMAVCGIAASRMGGEFIPSLDEGDVALQAIRIPGTSLTQSLEMQ-- 574 IR +A++LM +A ++ P++ V++ A PG Q+++ Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSA-NYPGAD-AQTVQDTVT 62 Query: 575 AMLERRLLKIPEVREVFARTGTAEVATDLMPPSTSDGYVMLKPR-KEWPDPEKPKASVVS 633 ++E+ + I + + + S S G V + + DP+ + V + Sbjct: 63 QVIEQNMNGIDNLMYMSST-------------SDSAGSVTITLTFQSGTDPDIAQVQVQN 109 Query: 634 EIQEAAEEIPGNVYEISQPIQQRFNE----LISGVRSDVGVKIFGDDLDVLVQSAAKVQA 689 ++Q A +P V Q I + +++G SD DD+ V S K Sbjct: 110 KLQLATPLLPQEVQ--QQGISVEKSSSSYLMVAGFVSDNP-GTTQDDISDYVASNVKDT- 165 Query: 690 VLQGVQGAADVKTEQASGLPVLTVKLNRQALSRYGISVGDVQNLVEIA----VGGKNSGM 745 L + G DV + + + L+ L++Y ++ DV N +++ G+ G Sbjct: 166 -LSRLNGVGDV--QLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGT 222 Query: 746 VFEGDRRFNIVVRLPEHLRSDISALKALPVPLPPLESQAKPVTALWSNSPLSQIRYVPLS 805 ++ N + ++ P E + S V L Sbjct: 223 PALPGQQLNASIIAQTRFKN-------------PEEFGKVTLRVNSDGSV------VRLK 263 Query: 806 ELAQI-DVAPGPNQISRENGKRRIVVTANVRGRDLGSFVADAQEQVEAKVK--LPAGYWI 862 ++A++ N I+R NGK + + A A + A+++ P G + Sbjct: 264 DVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKV 323 Query: 863 GWGGQFEQLVSATQRLTIVVPV-ALLLIFLLLFMSLGSMPDALLVFSGVPLALTGGIIAL 921 + V + + A++L+FL++++ L +M L+ VP+ L G L Sbjct: 324 LYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAIL 383 Query: 922 LLRGIPLSISAGIGFIALSGVAVLNGLVIITFIERLRSEGK-NVIDAVREGSLTRLRPVL 980 G ++ G + G+ V + +V++ +ER+ E K +A + ++ Sbjct: 384 AAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALV 443 Query: 981 MTALVASLGFVPMAIATGAGAEVQRPLATVVIGGIISSTILTLLVLPALYVLFRRE 1036 A+V S F+PMA G+ + R + ++ + S ++ L++ PAL + Sbjct: 444 GIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKP 499
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 28.2 bits (63), Expect = 0.049 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 2/78 (2%) Query: 122 ILGTPMLAVAAVGLIVNLVSMKLLSAGSSESLNVQGAYFEVLSDMLGSLGVIAAALIIMF 181 L + + GL+ S L S V M+ + + A ++M+ Sbjct: 119 YLTVALAILQGTGLVATARSAPLFGRCSVGGQIVPDQSIFTTITMV--ICMTAGTCVVMW 176 Query: 182 TGWTLADPIIGAGIGLFI 199 G + D IG G+ + + Sbjct: 177 LGELITDRGIGNGMSILM 194
>cloacin#Cloacin signature. Length = 551 Score = 32.0 bits (72), Expect = 3e-04 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 27 GGDHHGGGHFGGGYFGGHFGGGHHGGFGGHHGG 59 GG G H+GGG GH GG +G GG G Sbjct: 47 GGGSGSGIHWGGG--SGHGNGGGNGNSGGGSGT 77 Score = 27.8 bits (61), Expect = 0.008 Identities = 11/31 (35%), Positives = 11/31 (35%) Query: 25 HHGGDHHGGGHFGGGYFGGHFGGGHHGGFGG 55 G H GGG G G GG G G Sbjct: 50 SGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Score = 27.0 bits (59), Expect = 0.015 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 9/51 (17%) Query: 25 HHGGDHHGGGHFGGGYFGGHFGGGHHGG---------FGGHHGGHYGFYGG 66 H+ G H G+ GG G GGG G +GG G + GG Sbjct: 9 HNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Score = 26.2 bits (57), Expect = 0.028 Identities = 13/30 (43%), Positives = 15/30 (50%) Query: 37 GGGYFGGHFGGGHHGGFGGHHGGHYGFYGG 66 GG G H+GGG G GG +G G G Sbjct: 48 GGSGSGIHWGGGSGHGNGGGNGNSGGGSGT 77
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 49.5 bits (118), Expect = 2e-09 Identities = 19/103 (18%), Positives = 33/103 (32%) Query: 59 LIPEFPNLYLYRGVIWGDKGEYQRALQDFLTVSRLTPTDPLAFNNLGNVYDRLGDLDQAI 118 + + G+Y+ A + F + L D F LG +G D AI Sbjct: 31 ISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI 90 Query: 119 VNFDRAIGLRADYAQAYYNRAHTYALKQERERAIADYDQAISL 161 ++ + + ++ A K E A + A L Sbjct: 91 HSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 46.5 bits (110), Expect = 3e-08 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 10/139 (7%) Query: 17 NALKQGILEDKQRGFLLYSRGASYESLGLRDRALADFDAAIVLIPEFPNLYLYRGVIWGD 76 N + LE LYS + G + A F A VL +L G Sbjct: 29 NEISSDTLEQ------LYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQA 82 Query: 77 KGEYQRALQDFLTVSRLTPTDPLAFNNLGNVYDRLGDLDQAIVNFDRAIGLRADYA--QA 134 G+Y A+ + + + +P + + G+L +A A L AD + Sbjct: 83 MGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKE 142 Query: 135 YYNRAHTY--ALKQERERA 151 R + A+K ++E Sbjct: 143 LSTRVSSMLEAIKLKKEME 161 Score = 43.0 bits (101), Expect = 4e-07 Identities = 23/94 (24%), Positives = 35/94 (37%) Query: 195 INPKDVTALTNRATINLTMERYENALTDFDSALLLHPGNAAIFLGRGRVHLIAGALDSAI 254 I+ + L + A +YE+A F + +L ++ FLG G G D AI Sbjct: 31 ISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI 90 Query: 255 ADFKTAARLRPNNPYPIIWAHIARVHKGEDDREE 288 + A + P A + KGE E Sbjct: 91 HSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAE 124
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 395 bits (1017), Expect = e-138 Identities = 170/406 (41%), Positives = 246/406 (60%), Gaps = 23/406 (5%) Query: 1 MKAIFSLNSGSSSIKFALFTLDGANNPMLSAGGKIERIGIAPSLRVRSADGD-IVLERDW 59 MK I +N GSSS+K+ L + + +L A G ERIGI SL +A+G+ I +++D Sbjct: 1 MK-ILVINCGSSSLKYQLI--ESKDGNVL-AKGLAERIGINDSLLTHNANGEKIKIKKDM 56 Query: 60 PDGASLSHAELLKDIF-AWAAERLGD----RQVIAIGHRVVHGGTEFAAPRLVDDAVLDA 114 D H + +K + A G ++ A+GHRVVHGG F + L+ D VL A Sbjct: 57 KD-----HKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKA 111 Query: 115 LEKLNPLAPLHQPHNLAAIRAIAQLRPGLPQVACFDTAFHHDKPPVAARLPLPR-AFHEQ 173 + LAPLH P N+ I+A Q+ P +P VA FDTAFH P A P+P + + Sbjct: 112 ITDCIELAPLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKY 171 Query: 174 GIRRYGFHGLSYEYIARRLREI-DPVLAAGRMIAAHLGNGASLCAMRDGKSIDTTMGFTA 232 IR+YGFHG S++Y+++R EI + + + ++I HLGNG+S+ A+++GKSIDT+MGFT Sbjct: 172 KIRKYGFHGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTP 231 Query: 233 LDGLMMGTRCGAIDPGVVLHLQTQLGMSAADVEDLLYRKSGLLGVSGISSDMRTLSD--- 289 L+GL MGTR G+IDP ++ +L + +SA +V ++L +KSG+ G+SGISSD R L D Sbjct: 232 LEGLAMGTRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAF 291 Query: 290 -NSGPEAEEAIELFCWRVAREAGGLIASLGGLDAFVFTAGIGENHADVRRRICERLAWSG 348 N A+ A+ +F +RV + G A++GG+D VFTAGIGEN ++R I + L + G Sbjct: 292 KNGDKRAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLG 351 Query: 349 LWIDESANL--GSALRICEANSPVAVLVIPTNEERMIALHTLNVVR 392 +D+ N G I A+S V V+V+PTNEE MIA T +V Sbjct: 352 FKLDKEKNKVRGEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIVE 397
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 28.7 bits (64), Expect = 0.007 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 5/45 (11%) Query: 8 LRALMRFYEAEARYSASGLPADRAALLETLHPDIVLHQPDSLPYG 52 +R L +E AR + + L +A L ++ + + D L Y Sbjct: 52 MRTLSLMHETFARLTTTSL----SAQLRSM-VHVHVASVDQLTYE 91
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 30.9 bits (70), Expect = 0.016 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Query: 157 LRTEFDQLQAQYEDADELPDEVDQRLSEIETALEAFESRPHVFDPADI 204 RTEF Y D D+LP E +++ + ++ + +P V DI Sbjct: 296 YRTEF-----LYMDRDQLPTE-EEQFEAYKEVVQRMDGKPVVIRTLDI 337
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.008 Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 19/142 (13%) Query: 3 PRDASDLARRLARDAETVCRHYLSNGRREGRYWQVGDARNTPGRSMFVRLKESSKGPAGK 62 P + + LA L A+ + +L G G ++ G G S V + GK Sbjct: 8 PINFTSLADALLTRAKDLLPEWLPGGVLVGHEYECGSLAGGKGDSCKVNVT------TGK 61 Query: 63 WTDAATGEHG-DLLDIIRESCGLVDFHDVADEARR---------FLNLPRSEQEPSPNSA 112 W D +TGE G DLLD+ E GL A AR + P P P Sbjct: 62 WCDFSTGESGRDLLDLYAEIHGLKVSKAAAQVAREEGLESVAGIVMGAPAGAPAPKPPRP 121 Query: 113 RPPAQTGSPEAARRLFAMSQPM 134 PP + P + + QP+ Sbjct: 122 EPPPR---PVVEKECWETIQPV 140
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 65.6 bits (160), Expect = 1e-15 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 11/117 (9%) Query: 11 KPHVLVVEDEVLMRALIADELRTAGCAVIEANSADQALDYLVAGGKVDLMFSDIQMPGSL 70 +LV +D+ +R ++ L AG V ++A ++ A G DL+ +D+ MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI-AAGDGDLVVTDVVMPD-E 60 Query: 71 NGLQLAERVRADFPTVPVILTSGNDHLNSETMPG-------RFIAKPYDITQTVALV 120 N L R++ P +PV++ S T ++ KP+D+T+ + ++ Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSA--QNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 58.7 bits (142), Expect = 2e-13 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 5/127 (3%) Query: 1 MSDTRILIVDSNVLVRTPLAEYLRECGYQVLEATNSVEAKEVLNNTARPIDVVLIDVGAE 60 M+ IL+ D + +RT L + L GY V +N+ + A D+V+ DV Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI--AAGDGDLVVTDVVMP 58 Query: 61 DQSGFALAHWIRDRAPGPRVILAGTITGSVEKAADLCQDGPA--VSKPYDHRLVLDRIQR 118 D++ F L I+ P V++ + + A + G + KP+D ++ I R Sbjct: 59 DENAFDLLPRIKKARPDLPVLVM-SAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 119 LLAAKNR 125 LA R Sbjct: 118 ALAEPKR 124
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.4 bits (68), Expect = 0.016 Identities = 27/191 (14%), Positives = 63/191 (32%), Gaps = 4/191 (2%) Query: 46 PEQLKQRAQELEAARAAQKAAAEAQERLKAEIATLGEDRGKLNQQLIDVASQVRSVEVRV 105 EQ ++ + +A Q AEA+E+ A ++ + ++L S+V ++ + Sbjct: 153 AEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSAAQSEVVKMDGEI 212 Query: 106 GEAETRLRGLDGREQDLRNSLEARRTEIIEVLAALQRAGRRTPPALLVRPEDALQS---L 162 +RL +L +R E+ + A + L R D LQ+ Sbjct: 213 KTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELDELV-KKLSPRANDPLQNRPFF 271 Query: 163 RTAMLLGSVVPEMRGRAEKLSTDLGELVALRKTIATERDKLAADRDKLRTDQTRLAALVE 222 + ++++ + + I + ++ + R+ E Sbjct: 272 EATRRRVGAGKIREEKQKQVTASETRINRINADITQIQKAISQVSNNRNAGIARVHEAEE 331 Query: 223 ERQRKQATAEK 233 ++ Q Sbjct: 332 NLKKAQNNLLN 342
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 26.6 bits (58), Expect = 0.044 Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 10 KATTSKSATAKARKTPTHDAALQAQPDADKTLR 42 K A A A+ T +D +AQ D +K+LR Sbjct: 587 KTLNFNKAVADAKNTGNYDEVKKAQKDLEKSLR 619
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 32.5 bits (74), Expect = 5e-04 Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 38/174 (21%) Query: 8 GSFNPPHQAH-----RAISLFALKRLQLDRVWWLVTPGNPLKDNGGLHALAERAAAARKV 62 GSF+P H R LF D+V+ V NP K + ++ ER K Sbjct: 7 GSFDPITFGHLDIIERGCRLF-------DQVYVAVL-RNPNKQ--PMFSVQERLEQIAKA 56 Query: 63 AAD-PRIEISCLESVIGTRYTADTIDYLRRRASRLRFVWIMGADNLAQF----HRWQKWQ 117 A P ++ E + T++Y R+R + + G L+ F + Sbjct: 57 IAHLPNAQVDSFEGL--------TVNYARQRQAG---AILRGLRVLSDFELELQMANTNK 105 Query: 118 HIAAQVPMAVVDRPPRSFRALNAPAARALARYR------LPEADAGRLADRAAP 165 +A+ + V + L++ + +AR+ +P A L D+ P Sbjct: 106 TLASDLE-TVFLTTSTEYSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQFHP 158
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 42.1 bits (99), Expect = 2e-06 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 8/107 (7%) Query: 136 VPVINENDTVATAEIRYGDNDRLAARVATMASADLLVLLSDIDGLYTAPPAQDPNARLIP 195 VPVI E+ + E D D ++A +AD+ ++L+D++G + + Sbjct: 197 VPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAALY--YGTEKEQWLR 253 Query: 196 VVESITADIEAMAGSAASEFSRGGMRTKIEAA-KIATTGGTHMLIAS 241 V+ ++ F G M K+ AA + GG +IA Sbjct: 254 EVK--VEELRKYY--EEGHFKAGSMGPKVLAAIRFIEWGGERAIIAH 296
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 4e-21 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 2/103 (1%) Query: 5 LVVDDSSVVRKIARRILEELGFSVVEAEDGEQALELCTKSLPEAILLDWNMPVMDGYDFL 64 LV DD + +R + + L G+ V + + ++ D MP + +D L Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLL 66 Query: 65 GRLRRLPGGEGPKVVFCTTENDIDHISRALNAGANEYIMKPFD 107 R+++ V+ + +N +A GA +Y+ KPFD Sbjct: 67 PRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD 107
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.8 bits (163), Expect = 1e-15 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 4/107 (3%) Query: 26 LLVVDDDASQRTLISLAAKQAGHAVTVVASCAEAIREIGHKRFDCVTLDLMLEDGDGTEV 85 +LV DDDA+ RT+++ A +AG+ V + ++ A R I D V D+++ D + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 86 LKAIADSRFAGSVIVISGMDAARRIAARLYARSLGIDLQSLPKPVDL 132 L I +R V+V+S + + LPKP DL Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGA----YDYLPKPFDL 108
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 112 bits (281), Expect = 3e-31 Identities = 39/155 (25%), Positives = 69/155 (44%) Query: 7 SRGEIFVVDDDPAVRDTLSMVLSAGGYEVICFADGAALLAVARSRTPACILLDVHIPGKS 66 + I V DDD A+R L+ LS GY+V ++ A L + ++ DV +P ++ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 67 GLDILRELHGEDYPAPIFMISGQGDIPMAVNAIKYGALDFIEKPFRGSEIVARLNEAIGA 126 D+L + P+ ++S Q A+ A + GA D++ KPF +E++ + A+ Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 127 FARRQKENASPKIGSLHFPGREPLTRREREVLEQF 161 RR + + GR + VL + Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARL 156
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 58.7 bits (142), Expect = 8e-11 Identities = 41/122 (33%), Positives = 54/122 (44%), Gaps = 10/122 (8%) Query: 1074 TILVVEDDRLVRGYVLAQLHALGYATLEAANAAEALAIANGGERFDLLFTDIIMPGTMNG 1133 TILV +DD +R + L GY +NAA G+ DL+ TD++MP N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPD-ENA 62 Query: 1134 RQLASEIQRLRPGQRVLFTSGYT--ENAI--VHHGRLDEGLLLLPKPYRKSELAKMIRTA 1189 L I++ RP VL S AI G D LPKP+ +EL +I A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYD----YLPKPFDLTELIGIIGRA 118 Query: 1190 LT 1191 L Sbjct: 119 LA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.7 bits (233), Expect = 2e-25 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%) Query: 2 AKILVVDDDPVMQMTIQRLLQQAGHAVTVADDGQKAIARFQGESFDLVVMDIFMPGMDGL 61 A ILV DDD ++ + + L +AG+ V + + DLVV D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 EAMRLILKHAPSTPILMTSGRPNTPNSISEPDYLTMATKLGAVSALPKPFKPAALLAMVS 121 + + I K P P+L+ S + +I A++ GA LPKPF L+ ++ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIK-------ASEKGAYDYLPKPFDLTELIGIIG 116 Query: 122 DCLER 126 L Sbjct: 117 RALAE 121
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.5 bits (76), Expect = 0.003 Identities = 44/281 (15%), Positives = 80/281 (28%), Gaps = 30/281 (10%) Query: 403 AQQQASSNYVREAEAREAMNRNMEEAVEAFRAKSTELLSEVDDNVGVMRSTAESLTGIAG 462 ++Q++ + E +A E +N E A EA S V N T E Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAK--------SNVKAN----TQTNE------- 1084 Query: 463 HATEQAASAAGASEKTAVNVQTVAAAAEQLASSIVEIGRQIELSNTTVRNANATTARSEA 522 + + TV + VE + E+ T + +SE Sbjct: 1085 -VAQSGSETKETQTTETKETATVEKEEKAK----VETEKTQEVPKVTS-QVSPKQEQSET 1138 Query: 523 EIESLAQAAQSISTVVDLIQAIAAQTNLLALNATIEAARAGEAGRGFAVVAQEVKSLAEQ 582 A ++ TV I+ +QTN A + A + V + Sbjct: 1139 VQPQAEPARENDPTV--NIKEPQSQTNTTA-DTEQPAKETSSNVEQPVTESTTVNTGNSV 1195 Query: 583 TAKATQEIGQHVQGIQNSTSNAVASVKEVSTAMRQMADVTTAIASAVEQQGAATREITEN 642 Q NS S+ + + +V A S+ ++ A ++T Sbjct: 1196 VENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTST 1255 Query: 643 VQMAASGSKMLASNISTVSGAIEETSQSAASVRD--ASNNV 681 A + ++ + + + NV Sbjct: 1256 NTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYNV 1296
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.040 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 2/42 (4%) Query: 15 KTSSAVITATERVGFSVDRSDRFVLLGPSGCGKSTLLKAVGG 56 + G D S VL G G GKSTL+ + G Sbjct: 579 YILMGHVARVMEPGCKFDYS--VVLEGTGGIGKSTLINTLVG 618
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 32.1 bits (73), Expect = 0.007 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 508 ITLDVAARTIDLDVPEDELARRRAEWQPPAPRFERG 543 LDV + ++L +P+ ++ R + PP ++ G Sbjct: 147 AQLDVGQQRLNLTIPQAFMSNRARGYIPPE-LWDPG 181
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.9 bits (75), Expect = 0.002 Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 9/131 (6%) Query: 41 GAAVSVLKAAKACFDNTVEVSGMVLARDET-AVRPDRPGLKVAEVLVDAGDTVTAGQNLA 99 ++ + + + +G + + ++P + V E++V G++V G L Sbjct: 67 FLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSI-VKEIIVKEGESVRKGDVLL 125 Query: 100 RLTPPEGGTIMVQAPVAGTILTSTATIGAFASGRGEALFSIIARNEYDLVGLVPSAQINR 159 +LT + A S+ R + L I N+ + L Sbjct: 126 KLTA-------LGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQN 178 Query: 160 LAVNQTARIRI 170 ++ + R+ Sbjct: 179 VSEEEVLRLTS 189
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 50.4 bits (120), Expect = 5e-09 Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 2/97 (2%) Query: 258 PGAGGVRPTPPVESSTAPVAAPTPTPTPTQVVVAPPLPPPPPPPPPPVQKADAPPAPPVV 317 P A P P VE P P P P VV P P P P PV+K + P Sbjct: 63 PQAVQPPPEPVVEPE--PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKP 120 Query: 318 PPPPVPTPSPVIATTAPTTTAPATNVTAAPPVQDPFA 354 +P A PT++ + Sbjct: 121 VESRPASPFENTAPARPTSSTATAATSKPVTSVASGP 157 Score = 43.0 bits (101), Expect = 1e-06 Identities = 20/90 (22%), Positives = 23/90 (25%) Query: 265 PTPPVESSTAPVAAPTPTPTPTQVVVAPPLPPPPPPPPPPVQKADAPPAPPVVPPPPVPT 324 P V+ PV P P P P P P P K P Sbjct: 62 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPV 121 Query: 325 PSPVIATTAPTTTAPATNVTAAPPVQDPFA 354 S + T A T+ TA P Sbjct: 122 ESRPASPFENTAPARPTSSTATAATSKPVT 151 Score = 42.7 bits (100), Expect = 1e-06 Identities = 27/128 (21%), Positives = 32/128 (25%), Gaps = 11/128 (8%) Query: 264 RPTPPVESSTAPVA--------APTPTPTPTQVVVAPPLPPPPPPPPPPVQKADAPPAPP 315 P P S VA A P P P P P P PP PV P P Sbjct: 43 LPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK 102 Query: 316 VVPPPPVPTPSPVIATTAPTTTAPATNVTAAPPVQDPFAEDPTIKSLTAKIAANPEDAGA 375 P P P + + AP + + + A Sbjct: 103 PKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAAT---SKPVTSVASGPRA 159 Query: 376 LYRRGQVY 383 L R Y Sbjct: 160 LSRNQPQY 167 Score = 31.5 bits (71), Expect = 0.006 Identities = 17/79 (21%), Positives = 21/79 (26%) Query: 286 TQVVVAPPLPPPPPPPPPPVQKADAPPAPPVVPPPPVPTPSPVIATTAPTTTAPATNVTA 345 T V LP P P + P V PPP P P V Sbjct: 35 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVI 94 Query: 346 APPVQDPFAEDPTIKSLTA 364 P P + +K + Sbjct: 95 EKPKPKPKPKPKPVKKVEQ 113
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 80.4 bits (198), Expect = 5e-20 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 1/105 (0%) Query: 80 TAEREEIAAVAKSKPNIDLEITFDYNSANISQKSLASVQALGRALTSPDLKGSTFVVAGH 139 V + ++ F++N A + + A++ L L++ D K + VV G+ Sbjct: 201 APAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGY 260 Query: 140 TDAAGGDAYNQDLSERRADSIKRYLVEKFGIAGADLVTVGYGKSK 184 TD G DAYNQ LSERRA S+ YL+ K GI + G G+S Sbjct: 261 TDRIGSDAYNQGLSERRAQSVVDYLISK-GIPADKISARGMGESN 304
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.7 bits (90), Expect = 2e-05 Identities = 12/50 (24%), Positives = 22/50 (44%) Query: 57 VRVTGFVVPRREAVVGADQEGSRVTDVLVKEGDTVTENQELARLTPPPPQ 106 G + + E S V +++VKEG++V + L +LT + Sbjct: 84 ATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAE 133 Score = 30.2 bits (68), Expect = 0.011 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 25/127 (19%) Query: 120 LRAPAAGVVTE--VRTIAGAPASPQAGPMFRIA-VNNELELDAEVPSVHLLKLSPGLPAR 176 +RAP + V + V T G + + + I ++ LE+ A V + + ++ G A Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAE--TLMVIVPEDDTLEVTALVQNKDIGFINVGQNAI 387 Query: 177 ITRDNLP-----DIIGRLRVVAPQVDRST--QLGH---ARITLTSSA--------TLKPG 218 I + P ++G+++ + D +LG I++ + L G Sbjct: 388 IKVEAFPYTRYGYLVGKVKNINL--DAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSG 445 Query: 219 MFARANI 225 M A I Sbjct: 446 MAVTAEI 452
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 621 bits (1604), Expect = 0.0 Identities = 263/1038 (25%), Positives = 469/1038 (45%), Gaps = 49/1038 (4%) Query: 5 ISAWSIRNPLPSILFSLILLILGWMSFSKLAVTRLPNADIPVISVAVAQFGAAPSELESQ 64 ++ + IR P+ + + ++IL++ G ++ +L V + P P +SV+ GA ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTKIIEDGVSGVEGARHIQSLIT-DGLSVTTITFALETNTDRAINDVKDAVTRVRSDLPQ 123 VT++IE ++G++ ++ S G T+TF T+ D A V++ + LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 NVTEPLISRVDKIGLPIVTYAAISPGK--TPEQLSFFVDDVVKRELQGVRGVSQVERIGG 181 V + IS ++ +S T + +S +V VK L + GV V+ G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 182 VEREILVSLDPDRLQAMGLTAVNVSQSLRGTNVDVAGGRAEIGKN------DQAIRTLAG 235 + + + LD D L LT V+V L+ N +A G+ + +I Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 236 AKTLNELSNTMIPLFG-GGEVRLADLGTVTDTIADRRTFARFNGEPVVALGIKRAKGASD 294 K E + + G VRL D+ V + AR NG+P LGIK A GA+ Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 295 VVVAAAVQKRIDEVKAAHP-DVDLRLIDTSVEFTKGNYEAAISTLFEGAILAVIIVLLFL 353 + A A++ ++ E++ P + + + F + + + TLFE +L +++ LFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 RDFRATVIAAISLPLSIFPAFWAMDILGFSLNMVSFLAITLSTGILVDDAIVEIENIVRH 413 ++ RAT+I I++P+ + F + G+S+N ++ + L+ G+LVDDAIV +EN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 MRMGKS-PYRAALDAADEIGLAVIAISLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVF 472 M K P A + +I A++ I++ + A+F P +F G G ++QF IT+ + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 FSLLAARFVTPMLAAYFMK--HHDHEDPPPGF----------ILRAYQRIVTWSVQHYFV 520 S+L A +TP L A +K +H + GF + Y V + Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 521 TVLLGIGIFAASIWSTTLLSQGFLPAQDAARSLLAIELPPGAQLAYTEKVTEEIVARLRK 580 +L+ I A + L FLP +D L I+LP GA T+KV +++ K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 581 --RPEVRSVFVDGGRLQGAMEVRRAGMIVNYTPKTERKITQKELELAITKDLETIPDIRF 638 + V SVF G V+ P ER + E I + + IR Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 639 WFTDENGLRPIKL--VLTGSDPKLVDNVAS----------ELASQMKRIPI-ISNVVSDT 685 F + I TG D +L+D +L + P + +V + Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 686 SLDRPELRVQPRADLAARLGVSTESLSQTIRVATIGDVGPALAKYDAGGRLVPIRVQLED 745 D + +++ + A LGVS ++QTI A G + + GR+ + VQ + Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTY---VNDFIDRGRVKKLYVQADA 776 Query: 746 AARGDVKILEQLRVPLGQYGEKGGVPLAVVADIKLDQGPTSISRYDRGRQATVSADLVGL 805 R + +++L V GE VP + G + RY+ + + Sbjct: 777 KFRMLPEDVDKLYVRS-ANGEM--VPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPG 833 Query: 806 AALGDATKQIDDLPVRKSMPASVKLIPSDDAESLNELASGFITAITAGLMIVYAVLVLLF 865 + GDA +++L +PA + + + + + ++V+ L L+ Sbjct: 834 TSSGDAMALMENL--ASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALY 891 Query: 866 GTFLQPITILFSLPLSIGGAIGALMLTGKQLTIPVYIGMMMLMGIVTKNAIMLVEFAVEA 925 ++ P++++ +PL I G + A L ++ + +G++ +G+ KNAI++VEFA + Sbjct: 892 ESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDL 951 Query: 926 -IHAGTRRDEAIIDAGMKRARPIVMTTIAMVAGMMPSALAVGAGGEFRSPMALAVIGGLV 984 G EA + A R RPI+MT++A + G++P A++ GAG ++ + + V+GG+V Sbjct: 952 MEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMV 1011 Query: 985 FSTVLSLLFVPAMFLVMD 1002 +T+L++ FVP F+V+ Sbjct: 1012 SATLLAIFFVPVFFVVIR 1029
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 51.2 bits (122), Expect = 1e-09 Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 35/206 (16%) Query: 29 TDGVGRSVVTI---VGSRGNFCSGALIAPKLVLTAGHCVQPGVDYRIVEYDRERKPALKT 85 T+G V I + SG ++ +LT H V D A + Sbjct: 83 TNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHG------DPHALKAFPS 136 Query: 86 VRRVAVHPG--FSMQSILAHRATADVALLELAAPAPER----VAAVLGVPQS-PLAAGNI 138 +P F+ + I + D+A+++ + + V + + Sbjct: 137 AINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQN 196 Query: 139 FTVAGIGVAIPGDGKSGGVVRAAPLVATGRPGTLQIRLVDPATQGAKPGLGGCTGDSGGP 198 TV G PGD + + + + +Q D +T G G+SG P Sbjct: 197 ITVTG----YPGDKPVATMWESKGKITYLKGEAMQY---DLSTTG---------GNSGSP 240 Query: 199 AFETQAQGPVLIGVVSWSTGPNLGDG 224 F + + +IG+ Sbjct: 241 VFNEKNE---VIGIHWGGVPNEFNGA 263
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.0 bits (213), Expect = 5e-21 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 2/136 (1%) Query: 12 LVVDDSPETLRLLTDALDGAGMTVMVALDGAAAMRIVDQITPDIILLDAVMPGIDGFETC 71 LV DD +L AL AG V + + A R + D+++ D VMP + F+ Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLL 66 Query: 72 RKLKREAGLSNVPVIFMTGLADTEHIVQGLEAGGVDYVTKPIAVEEMLARIRVHLANARM 131 ++K+ ++PV+ M+ ++ E G DY+ KP + E++ I LA + Sbjct: 67 PRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 132 TQSARAALDVSGRFLL 147 S G L+ Sbjct: 125 RPSKLEDDSQDGMPLV 140
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.0 bits (187), Expect = 3e-16 Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 1/153 (0%) Query: 916 PRKTILITDDDPVHRDLLREVLTPLGFILLSAPDGPSCLALAQHCQPDLFILDISMPGMD 975 TIL+ DDD R +L + L+ G+ + + + DL + D+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 976 GWTVAETLRSSGHHQARILMTSASALEAHGRPLAQPFHDSYLMKPIDIPRLLEAIRQLLK 1035 + + ++ + ++M++ + + + +D YL KP D+ L+ I + L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYD-YLPKPFDLTELIGIIGRALA 120 Query: 1036 LDWSYQTDIPVAQPRWRPETGSRPPPRYVEELM 1068 + + P G + + ++ Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL 153
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.7 bits (79), Expect = 3e-04 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 45/157 (28%) Query: 41 VIIGPNGAGKTTVLDLICGK----------TKATSGSIQFRGK------ELTKLRENEI- 83 V+ G G GK+T+++ + G Q G E+T R + Sbjct: 600 VLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAFRRADAE 659 Query: 84 -VKAGVGR---KFQTPSVFEDLSVFENLEISFPRGRTVF-GSL---TFQRDAT------- 128 VKA +++ + PR + V + + D T Sbjct: 660 AVKAFFSSRKDRYRGA--------YGRYVQDHPR-QVVIWCTTNKRQYLFDITGNRRFWP 710 Query: 129 --VQDRVEEVAEMIFLKDRLKTSAAELSH-GQKQWLE 162 V R V + + +L A L G++ + Sbjct: 711 VLVPGRANLVW-LQKFRGQLFAEALHLYLAGERYFPS 746
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 438 bits (1128), Expect = e-139 Identities = 223/1045 (21%), Positives = 426/1045 (40%), Gaps = 62/1045 (5%) Query: 16 LSAWALRQSSLVIFMMIVVLLAGAWSYTKLTRNEDPPFTIKTMVVSVIWPGATVADTTNL 75 ++ + +R+ + I++++AGA + +L + P + VS +PGA + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 76 VTDRIEQKLEETPYLDRLDSYT-RAGESVIMVNLRDDTPPQAVSDVWYQVRKKVGDIAPM 134 VT IEQ + L + S + AG I + + T P QV+ K+ P+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQV---QVQNKLQLATPL 117 Query: 135 LPSGVRGP-FFNDEFGDTFGIIYGFTAEG--FSDRELRDRLD-TIRAEVLRVKDVGKVQL 190 LP V+ ++ ++ ++ GF ++ + ++ D + ++ + R+ VG VQL Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 191 LGVQEEQIAVEFSPRKLAAFGLNAQQVMNALAAQNAVQPAG------VTRTGEEKIALRV 244 G + + + L + L V+N L QN AG + ++ Sbjct: 178 FG-AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 245 SGAFASEASLRAVTLHVAQ--RYVPLTDIATISRIPVDPPAAAFRVNSEKALGLAISMAP 302 F + VTL V V L D+A + + + R+N + A GL I +A Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARV-ELGGENYNVIARINGKPAAGLGIKLAT 295 Query: 303 TGNLSEFGAAVRERMTEIGARLPHGIDMVAVADQSSVVKDAIFGFLKVLVEAIAIVLAVS 362 N + A++ ++ E+ P G+ ++ D + V+ +I +K L EAI +V V Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 363 FLSLGA-RAGLVVTFSIPLVLAMTFVGMELAGIGLQRISLGALIIALGLLVDDAMITVEA 421 +L L RA L+ T ++P+VL TF + G + +++ +++A+GLLVDDA++ VE Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 422 MVSRLEAGWDRARAASY-AYDSTAFPMLTGTLVMIAGFIPVGFAASSAGEYCFSLFMVVL 480 + + + A+ + ++ +V+ A FIP+ F S G + ++ Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 481 ISLSASWIVAVLFSPIIGTWILPKSMAAHGHEDGRIGRAYNR-----------LLELVLR 529 +++ S +VA++ +P + +L A H G +N + +L Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILG 535 Query: 530 RPAATIIVSLTALVVSGLGAMRLEQQFFPPSDRPELLVSLTLPQNASFEATDVQAKRLEA 589 +++ + + +RL F P D+ L + LP A+ E T ++ Sbjct: 536 STGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTD 595 Query: 590 MLKTDPDIDRFSTYVGAGAIRFYLPMDVLLSNDNVTQMVVVARDLDARDRVKARLDA--- 646 + + S + G N V + + R+ + +A Sbjct: 596 YYLKNEKANVESVFTVNG-------FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIH 648 Query: 647 AFRTEFADLITRANPLELGPP------VGWPLKYRVT---GPDVGKVREIAMQLANIVAG 697 + E I + P + + G + + QL + A Sbjct: 649 RAKMELGK-IRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 698 N-AETRDVNLSAGEPQKSVEVKVRQTEARAVGLSSQDVAAALATIFSGSPVTTVRDANRL 756 + A V + E +++V Q +A+A+G+S D+ ++T G+ V D R+ Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 757 VDVVVRSAGLERNDLATVANLQITGPDGAAIPLRQIADVAYGVEEPIIWRRQRLPIITVQ 816 + V++ R V L + +G +P + P + R LP + +Q Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQ 827 Query: 817 ADVDAAVQPATVSEALSPAVAKFAAGLPDGYRIAEGGVVEEAAKGNASIFAVIPLMLLVM 876 + P T S + A+ LP G G+ + A++ + +V+ Sbjct: 828 GE----AAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVV 883 Query: 877 VSLLMVQLRSFSRTGIALAMAPFGLIGVVGAMLPTGTAMGFVAQLGVIALAGMIIRNAVI 936 L S+S + + P G++GV+ A +G++ G+ +NA++ Sbjct: 884 FLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAIL 943 Query: 937 LIEEA-DINVAGGMATDDAIKAAARHRARPILLTALAAILGMIPIAPQVFWG-----PMA 990 ++E A D+ G +A A R R RPIL+T+LA ILG++P+A G + Sbjct: 944 IVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVG 1003 Query: 991 FAIIGGLAAATLLTLTLLPVILSLL 1015 ++GG+ +ATLL + +PV ++ Sbjct: 1004 IGVMGGMVSATLLAIFFVPVFFVVI 1028 Score = 94.1 bits (234), Expect = 1e-21 Identities = 73/530 (13%), Positives = 172/530 (32%), Gaps = 47/530 (8%) Query: 525 ELVLRRPAATIIVSLTALVVSGLGAMRLEQQFFPPSDRPELLVSLTLPQNASFEATDVQA 584 +RRP ++++ ++ L ++L +P P + VS P + D Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 585 KRLEAMLKTDPDIDRF-STYVGAGAIRFYLPMDVLLSNDNVTQMVVVARDLDARDRVKAR 643 + +E + ++ ST AG++ L D V + Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQV-----QNKLQLATPL 117 Query: 644 LDAAFRTEFADLITRANPLELGPPVGWPLKYRVTGPDVGK-------VREIAMQLANI-- 694 L + + I+ + P + + L+ + Sbjct: 118 LPQEVQQQ---GISVEKSS---SSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNG 171 Query: 695 VAGNAETRDVNLSAGEPQKSVEVKVRQTEARAVGLSSQDVAAALATIFSGSPVTTVRDAN 754 V DV L Q ++ + + L+ DV L + Sbjct: 172 VG------DVQLFGA--QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTP 223 Query: 755 RLVDVVVRSAGLERNDLATVANLQ----ITGPDGAAIPLRQIADVAYGVEE-PIIWRRQR 809 L + ++ + + DG+ + L+ +A V G E +I R Sbjct: 224 ALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARING 283 Query: 810 LPIITVQADVDAAVQPATVSEALSPAVAKFAAGLPDGYRIAE----GGVVEEAAKGNASI 865 P + + ++A+ +A+ P G ++ V+ + + + Sbjct: 284 KPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSI--HEVV 341 Query: 866 FAVIPLMLLVMVSLLMVQLRSFSRTGIALAMAPFGLIGVVGAMLPTGTAMGFVAQLGVIA 925 + ++LV + + + L++ T I P L+G + G ++ + G++ Sbjct: 342 KTLFEAIMLVFLVMYLF-LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVL 400 Query: 926 LAGMIIRNAVILIEEA-DINVAGGMATDDAIKAAARHRARPILLTALAAILGMIPIA--- 981 G+++ +A++++E + + + +A + + ++ A+ IP+A Sbjct: 401 AIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460 Query: 982 --PQVFWGPMAFAIIGGLAAATLLTLTLLPVILSLLFAAEARRQEGADRA 1029 + + I+ +A + L+ L L P + + L + Sbjct: 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGG 510
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.7 bits (98), Expect = 3e-06 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 21/185 (11%) Query: 97 VANELRAAEADLASATAAESLAKTTLERQQILLDKQIVAQVRVDEADANWRSAKARLDAA 156 NELR ++ L + AK + L +I+ ++R + Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR---------QTTDNIGLL 314 Query: 157 ASALANAKARLSYTRLLAPETGVITAIGANA-GQVVPAGQ---MVVRLASSLERDAVFNV 212 LA + R + + AP + + + + G VV + ++V +LE A V Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA--LV 372 Query: 213 AESVINNAPPDIEVKVTLVSDPSV---VLSGRVRDVSPTADPSTRT---YRVRVALPDTP 266 I + + + P L G+V++++ A R + V +++ + Sbjct: 373 QNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENC 432 Query: 267 PLSYG 271 + Sbjct: 433 LSTGN 437 Score = 39.8 bits (93), Expect = 1e-05 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 7/99 (7%) Query: 70 GRVTSRQVEIGASVQKGELLATLDDTNVANELRAAEADLASATAAESLAKTTLERQQILL 129 V V+ G SV+KG++L L AEAD ++ A+ R QIL Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALG-------AEADTLKTQSSLLQARLEQTRYQILS 157 Query: 130 DKQIVAQVRVDEADANWRSAKARLDAAASALANAKARLS 168 + ++ + + + K + S Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFS 196
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.1 bits (153), Expect = 2e-14 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%) Query: 1 MARPALTPDELDSTRRRILAETAAIVASEGYAALSMRRIASAIGLTAGALYRYFPTKQHV 60 MAR T E TR+ IL + + +G ++ S+ IA A G+T GA+Y +F K + Sbjct: 1 MARK--TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDL 58 Query: 61 LMALWSDAIAELDARIVA-MDAAHDHDVDAIAGILRAYAEFALADPARFR----LMFLEN 115 +W + + + + + + IL E + + R + Sbjct: 59 FSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCE 118 Query: 116 DLGQFDELAREQDFFASYLR--LQARVEQAIRAGALQAM-PAEAATQLLWGSVHGIVTLG 172 +G+ + + Q ++ ++ I A L A A ++ G + G + Sbjct: 119 FVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISG--LME 176 Query: 173 VTVNQIDFGDLLRLAATAADTMLRGLSVPPS 203 + DL + A +L + P+ Sbjct: 177 NWLFAPQSFDLKKEARDYVAILLEMYLLCPT 207
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 50.1 bits (119), Expect = 6e-08 Identities = 54/318 (16%), Positives = 102/318 (32%), Gaps = 30/318 (9%) Query: 597 YRPELPNPATEQPSAQIVSPAANQAAFAAAPRDFHAAA----APAAPPPPIPPKAIAEIL 652 Y PE+ + I +P QA + P + A AP PP P P E + Sbjct: 981 YNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETV 1040 Query: 653 EPHAAQAARPTPIVPELPPDHPLEPGTRPLGRTASPAERIAASEDALSELPAGKREPVST 712 ++ Q ++ + + + R A E + + V+ Sbjct: 1041 AENSKQESKTVEKNEQDATE-------------TTAQNREVAKEAKSNVKANTQTNEVAQ 1087 Query: 713 SSFIAAARRAAQAAAAAQPVDAKKADKAKKDKPKAKEPPKEAVKDLPKE--------AAK 764 S + + Q + +K +KAK + K +E PK + PK+ A+ Sbjct: 1088 S---GSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144 Query: 765 AKIKDKPTVALTAEGDEEVSTIGSKIRSLLVGASVVVIVLGTFKFAMSLLDSGSTPPPIT 824 ++ PTV + E + +T + +S V + + P T Sbjct: 1145 PARENDPTVNI-KEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTT 1203 Query: 825 PMESQGEAPRAQMPSATPSLSPRPATPDQSVPSLTSPTPMDRQSYNRSMPTEAETIAMLA 884 P +Q ++ + + R + + DR + T T A+L+ Sbjct: 1204 PATTQPTV-NSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLS 1262 Query: 885 IPQDTDKQAAAAAAPDVT 902 + + A V+ Sbjct: 1263 DARAKAQFVALNVGKAVS 1280 Score = 35.4 bits (81), Expect = 0.002 Identities = 46/249 (18%), Positives = 83/249 (33%), Gaps = 25/249 (10%) Query: 550 IEGDLRNVRATSSQPAAILAPPIEAPMPAARAPAPQTYAEPARPEPAYRPELPNPATEQ- 608 I+ D+ +V + + + A + P+ P PA + +T AE ++ E + ATE Sbjct: 1003 IQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETT 1062 Query: 609 -------PSAQIVSPAANQAAFAAAPRDFHAAAAPAAPPPPIPP----KAIAEILE---- 653 A+ A Q A KA E + Sbjct: 1063 AQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEV 1122 Query: 654 -PHAAQAA----RPTPIVPELPPDHPLEPGTRPLGRTASPAERIAASEDALSELPAGKRE 708 +Q + + + P+ P +P T + S A +E E + + Sbjct: 1123 PKVTSQVSPKQEQSETVQPQAEPARENDP-TVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 709 PVSTSSFIAAARRAAQAAAAAQPVDAKKADKAKKDKPKAKEPPKEAVKDLPK--EAAKAK 766 PV+ S+ + + P + ++ K K + +V+ +P E A Sbjct: 1182 PVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN-KPKNRHRRSVRSVPHNVEPATTS 1240 Query: 767 IKDKPTVAL 775 D+ TVAL Sbjct: 1241 SNDRSTVAL 1249
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 91.3 bits (226), Expect = 2e-24 Identities = 77/259 (29%), Positives = 107/259 (41%), Gaps = 31/259 (11%) Query: 3 EQRVALVTAGGSGMGAAAARRLAADGFQVG----------ILSSSGKGEALATELGGLGV 52 E ++A +T G+G A AR LA+ G + + SS K EA E V Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 53 TGSNKSNDDLKRLVDGAMRRWGRIDVLVNSAGHGPRAPILELSDEQWHTGLDTYLLNVIR 112 S ++ R+ R G ID+LVN AG I LSDE+W V Sbjct: 67 RDSAAIDEITARI----EREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 113 PSRLVTPIMQTQKNGAIINISTAWTFEPSAMFPTSAVFRAGLASFTKIFADSYAADNIRM 172 SR V+ M +++G+I+ + + P A +A FTK A NIR Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 173 NNVLPG----------WIDSLPAT-------EERRSSVPMARYGKAEEIAATIAFLASDG 215 N V PG W D A E ++ +P+ + K +IA + FL S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 216 AAYITGQNIRVDGGLTRSV 234 A +IT N+ VDGG T V Sbjct: 243 AGHITMHNLCVDGGATLGV 261
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 2e-18 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Query: 404 MDRTGSERILIVEDRADVAELARSILEDFGYRTEIAANAPTALELLDSEIRFDLLFTDLV 463 M IL+ +D A + + L GY I +NA T + + DL+ TD+V Sbjct: 1 MTGA---TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVV 56 Query: 464 MPGGMNGTVLAREARKRQPKLKVLLTTGYSDAAVERADANIGEFEIINKPYRRTDLVRRV 523 MP N L +K +P L VL+ + + + G ++ + KP+ T+L+ + Sbjct: 57 MPD-ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 524 RQLLD 528 + L Sbjct: 116 GRALA 120
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 91.3 bits (226), Expect = 3e-24 Identities = 68/251 (27%), Positives = 113/251 (45%), Gaps = 23/251 (9%) Query: 5 LEGKVAAVTGAASGIGLASSEAMLAAGARVVMIDRDASALARLRE------RHGEAVIPV 58 +EGK+A +TGAA GIG A + + + GA + +D + L ++ RH EA Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF--- 62 Query: 59 VIDLLDSTDCATLLPRILDAAGRLDILHANAGSYIGGDLVDARTDAIDRMLNLNVNVVMK 118 D+ DS + RI G +DIL AG G + + + ++N V Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 119 NVRDALPHMIDRGSGDIIVTSSLAAHYPTPWEPVYASSKWAIDCFVQTVRRQVFKHGIRV 178 R +M+DR SG I+ S A P YASSK A F + + ++ ++ IR Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 179 GAISPGPVVTALIAD-WPAEKLKEARESGS------------LLEPAEVANVIMFMLTRP 225 +SPG T + W E E GS L +P+++A+ ++F+++ Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 226 RG-MTIRDVVM 235 G +T+ ++ + Sbjct: 243 AGHITMHNLCV 253
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.5 bits (68), Expect = 0.024 Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 3/193 (1%) Query: 356 GQMAAGNDDVVVPTSDRDDEIAAMAGSLQTFKEALLEKKRAEQAAAAEAQAKIERGQRVE 415 G AA N + + + EA K EQAAA + E+ ++ Sbjct: 183 GLTAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQA 242 Query: 416 RFTREFEMAIGEVVGVVSSASADLERSAASLTTTAGRSLELATVVTAASEEASTNVHSVA 475 A+ VV++A+ A + +++ A V ++ +V +V Sbjct: 243 AIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASAPSVMAVG 302 Query: 476 AAAEEMSSSVNEISRQVQDSARIASEALAQAR---KTNDNVAELAKAAARIGDVVELINA 532 A+ SS E + + + + A+ + N+ +AKA+ + + L N Sbjct: 303 FASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVNLNAVAKASGTVDLPMRLTNE 362 Query: 533 IAGQTNLLALNAT 545 G T L++ +T Sbjct: 363 ARGNTTTLSVVST 375
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.1 bits (75), Expect = 0.001 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 7/51 (13%) Query: 39 VHALSRISLDIKPG---EFVCV-VGPSGCGKSTLLRLLAGLDGYSDGRLLL 85 + ++R+ ++PG ++ V G G GKSTL+ L GLD +SD + Sbjct: 582 MGHVARV---MEPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 91.7 bits (227), Expect = 1e-24 Identities = 59/248 (23%), Positives = 105/248 (42%), Gaps = 30/248 (12%) Query: 1 MTGTSSGIGRAIAERLLAGGWHVTGIDRALPDWTHA--------GFVGQQ--ADLAEPHA 50 +TG + GIG A+A L + G H+ +D P+ + AD+ + A Sbjct: 13 ITGAAQGIGEAVARTLASQGAHIAAVD-YNPEKLEKVVSSLKAEARHAEAFPADVRDSAA 71 Query: 51 LIAQ----LADLGTVTALVHAAGYMRVGRLGELMPDSGEGMWQVHVGAAEALANALAPDM 106 + ++G + LV+ AG +R G + L + E + V+ + +++ M Sbjct: 72 IDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYM 131 Query: 107 --GEGGRIVLIGSRTANGA-AGRSQYAATKAALTGLARSWAIELAPRRITVNVIAPAATD 163 G IV +GS A + YA++KAA + +ELA I N+++P +T+ Sbjct: 132 MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGSTE 191 Query: 164 TPFLRD--PSRAGTAPVLP----------PMGRFVDPAEVAALTAFLLSPEASAITGQTI 211 T G V+ P+ + P+++A FL+S +A IT + Sbjct: 192 TDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMHNL 251 Query: 212 TICAGASL 219 + GA+L Sbjct: 252 CVDGGATL 259
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 1e-20 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 SRVLIADDEESMRTLVARAIAMDGHEIVTAQDGAEALDILTRENGAFDLLLTDIQMPIMD 61 + +L+ADD+ ++RT++ +A++ G+++ + A + G DL++TD+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPDEN 61 Query: 62 GIALALSAARDYPDLVILLMTGFAHQRERASNLQAIAHDVITKPFSVADIRTAVADALA 120 L + PDL +L+M+ + A+D + KPF + ++ + ALA Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.009 Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 12/123 (9%) Query: 80 PSPDMLDLPRRTEAPAKRKPQKTSNAQPVDDKSARKAARTDQKEQRRR--------EKEW 131 P+P T A ++ KT D R KE + E Sbjct: 1028 PAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQ 1087 Query: 132 QKQQAAAAKQREHQQKAVAAAEA---ALERAQKEHESIASEIAADRARIEQ-RAQAEERR 187 + + E ++ A E +E + S+++ + + E + QAE R Sbjct: 1088 SGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR 1147 Query: 188 WQD 190 D Sbjct: 1148 END 1150
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 207 bits (529), Expect = 9e-60 Identities = 126/505 (24%), Positives = 225/505 (44%), Gaps = 42/505 (8%) Query: 249 VFPVSNSAPEPLVAELEKIMDTGENGLSQNLVKLQVVSRLNAIMVVTRKPALLQTAATWI 308 V P++N A L L ++ D G V + ++++T + A+++ T + Sbjct: 131 VVPLTNVAARDLAPLLRQLNDNAGVGSV-------VHYEPSNVLLMTGRAAVIKRLLTIV 183 Query: 309 RRLDQADSGRTSVHVYRIRYGDARQLAKVLTDMFGGASSSS--------------TDSTD 354 R+D A G SV + + A + K++T++ S S+ T++ Sbjct: 184 ERVDNA--GDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVL 241 Query: 355 NQAAPGSDGTTTSVADRLSFNTNAAGSANGGATTSSRLQGAGGLSGMQSSSASSASSSTP 414 P S ++ +L G+ + A L + Sbjct: 242 VSGEPNSRQRIIAMIKQLDRQQATQGNTK---VIYLKYAKASDLV---------EVLTGI 289 Query: 415 SASGLEPRSGGSGGQALMPNVRITPDTVNNSLLIYADRESYRTISSTLQQLDQPVLQVGI 474 S++ + AL N+ I N+L++ A + + + QLD QV + Sbjct: 290 SSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLV 349 Query: 475 DATIAEVTLTNELSYGVQAYLSSKVLGLGTDKGSITNTQTTSVATATTAAATSALINRAL 534 +A IAEV + L+ G+Q + + T+ G +T S+ + AL Sbjct: 350 EAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASAL 409 Query: 535 PGFNFLIGHEASPN--MILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGSAT 592 FN + N M+L AL + T +L+ PS+V ++N AT VG VPV TGS T Sbjct: 410 SSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQT 469 Query: 593 VLSSSNTVVNTIDYRNTGIILRVVPRIAANGNVRLEVEQEISNV---AAQSAASLTPTVS 649 +S + + NT++ + GI L+V P+I +V LE+EQE+S+V A+ +++ L T + Sbjct: 470 --TSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFN 527 Query: 650 QRKVKSAISVANGQTVLLAGLISEQQNGNRNGIPGFDEIPILGDTFSHQDKKGTRTELII 709 R V +A+ V +G+TV++ GL+ + + + +P +IP++G F KK ++ L++ Sbjct: 528 TRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLML 587 Query: 710 FIRPQIIRDGSDAHQVAEELRSKLR 734 FIRP +IRD + Q + + Sbjct: 588 FIRPTVIRDRDEYRQASSGQYTAFN 612 Score = 93.1 bits (231), Expect = 1e-21 Identities = 74/310 (23%), Positives = 127/310 (40%), Gaps = 25/310 (8%) Query: 80 ADGKGYDLNFENTPIALVAKVVIGDILGAGYSIDPRVQGSVSLVSARPVPKSDILFVLES 139 A + + +F+ T I V L IDP V+G++++ S + + S Sbjct: 25 AAAEEFSASFKGTDIQEFINTV-SKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLS 83 Query: 140 ALRLSGVVLVREGGG-YKLTPLGDAIGAGRVDGEAGRAEPGYG----VSVVPLQYVGAQT 194 L + G ++ G K+ DA A A PG G VVPL V A+ Sbjct: 84 VLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVA--SDAAPGIGDEVVTRVVPLTNVAARD 141 Query: 195 ILKLMDSFATRA--GSVRADSTRNLLLIQGTGAERRSAIETALSF--DVDWMRGQSVGVF 250 + L+ A GSV N+LL+ G R + I+ L+ VD +SV Sbjct: 142 LAPLLRQLNDNAGVGSVVHYEPSNVLLMTG----RAAVIKRLLTIVERVDNAGDRSVVTV 197 Query: 251 PVSNSAPEPLVAELEKI--MDTGENGLSQNLVKLQVVSRLNAIMVVTRKPALLQTAATWI 308 P+S ++ +V + ++ + + + R NA+ +V+ +P Q I Sbjct: 198 PLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAV-LVSGEPNSRQRIIAMI 256 Query: 309 RRLDQADSGRTSVHVYRIRYGDARQLAKVLTDMFGGASSSSTDSTDNQAAPGSDGTTTSV 368 ++LD+ + + + V ++Y A L +VLT + SST ++ QAA ++ Sbjct: 257 KQLDRQQATQGNTKVIYLKYAKASDLVEVLTGI------SSTMQSEKQAAKPVAALDKNI 310 Query: 369 ADRLSFNTNA 378 + TNA Sbjct: 311 IIKAHGQTNA 320
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 238 bits (608), Expect = 6e-77 Identities = 115/406 (28%), Positives = 189/406 (46%), Gaps = 4/406 (0%) Query: 1 MPSYRYRALTQSGEIVVGSLVAPSRSEVERRISYLQLLPIETIEEKT-SGSGAASGFAFG 59 M Y Y+AL G+ G+ A S + + + L+P+ E + ++G + Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 60 AP---SAAEVTTFTRDLALLLKAGARLDDALELLSGDSEVGRLRPVVARLRTAIMAGESF 116 S +++ TR LA L+ A L++AL+ ++ SE L ++A +R+ +M G S Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 117 ADAAAAQPRLFSPMYVALMRVGEASGTLDHVLTALAGERERSEATRRKLTDAMQYPAFVF 176 ADA P F +Y A++ GE SG LD VL LA E+ + R ++ AM YP + Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 177 LAAIGVMLFFLVAVLPNFSAVLRDFGGRADTALGFFMSLSDIVRANAAAITLGCAMLIAA 236 + AI V+ L V+P + M +SD VR + L A Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 237 VWWLLRQPAVRAALTSALAVIPGIGDILMFYRTSLFCRNLGLLLGCGVTLSAALRILVDV 296 +LRQ R + L +P IG I T+ + R L +L V L A+RI DV Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 297 MAVTSSRAPWSAAADRVRHGGKLSQALSADNMLPPMALRMLRLGEETGQLPTLSTRIAEF 356 M+ +R S A D VR G L +AL + PPM M+ GE +G+L ++ R A+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 357 YESKLQRGLDRVVGIVGPAAILLISVVVGGLIVSIMTALLSVTQLV 402 + + + +G+ P ++ ++ VV ++++I+ +L + L+ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 135 bits (342), Expect = 1e-43 Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 6/136 (4%) Query: 10 VRRSGRENERGFTLVEMLVVITIIGLIMGLIGPRVLNYLSESKTKAARIQLQSFSAALDL 69 +R + ++ RGFTL+E++VVI IIG++ L+ P ++ ++ + A + + ALD+ Sbjct: 1 MRATDKQ--RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDM 58 Query: 70 FYLDVGRYPSTSEGLAALAQRP---PGLGTWNGPYLKGGAVPKDPWNTAYVYRAPGDHGP 126 + LD YP+T++GL +L + P P +N +P DPW YV PG+HG Sbjct: 59 YKLDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYI-KRLPADPWGNDYVLVNPGEHGA 117 Query: 127 FDILSYGADGQEGGSG 142 +D+LS G DG+ G Sbjct: 118 YDLLSAGPDGEMGTED 133
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 39.5 bits (92), Expect = 1e-06 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 11/83 (13%) Query: 4 DSQRGFTLLEMVCVLAIVALLASVAWPYLPRQTSRPRLQAYALQAVTLLKSDRAASMRNG 63 D QRGFTLLE++ V+ I+ +LAS+ P L + Q V L + A M Sbjct: 5 DKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVAL---ENALDM--- 58 Query: 64 LRVDTRLDTSRRLISSGSGGAAL 86 +LD ++ G +L Sbjct: 59 ----YKLDNH-HYPTTNQGLESL 76
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 27.2 bits (60), Expect = 0.014 Identities = 9/23 (39%), Positives = 16/23 (69%) Query: 6 QAGFTLIEVLVALAVVSVSIVAI 28 Q GFTL+E+++ L ++ VS + Sbjct: 3 QRGFTLLEMMLILLLMGVSAGMV 25
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 594 bits (1532), Expect = 0.0 Identities = 245/1046 (23%), Positives = 440/1046 (42%), Gaps = 44/1046 (4%) Query: 18 FAIRFRGIVLALACTILGYGLFSLGEAKYGVFPEFAPPQVSIQTEAPGLSPEQVEVLVTQ 77 F IR LA ++ G ++ + +P APP VS+ PG + V+ VTQ Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63 Query: 78 PIETSINGLAGVESMRSSSIQ-GLSVLSVIFQPGTDVFRARQLVAERLTAIVNGLPQGVR 136 IE ++NG+ + M S+S G +++ FQ GTD A+ V +L LPQ V+ Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123 Query: 137 APSMTPLVPAAGTVLVIGLTSE--QRSLMDLRTIADWTVSRRLLAVAGVAQVTTYGRDIR 194 ++ ++ ++V G S+ + D+ V L + GV V +G Sbjct: 124 QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ-Y 182 Query: 195 SLQVQVRADDLVRFGIGMNDVVAAARKATGVRGAGFVDTA------NQRVILQTQGQSLT 248 ++++ + AD L ++ + DV+ + AG + + Q + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 249 PEQLARTVLL-HQSGASVVLGDVATVVSAPEPPIGGALINGKPGIMMMISQQYGANTRNV 307 PE+ + L + G+ V L DVA V E A INGKP + I GAN + Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 308 AARVEAALQELRPAL-DGEKVQLHADLFRPATFIDSAIQNVLFALLIGGALVIVVLFLFL 366 A ++A L EL+P G KV + F+ +I V+ L LV +V++LFL Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLY---PYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 367 SDWRTSVISCTAIPLSLFSAVLALQWMGQSLDTMTLGGLAIAIGEVVDDAVIGVENVVRR 426 + R ++I A+P+ L L G S++T+T+ G+ +AIG +VDDA++ VENV R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 427 LRENRALPSPRAAARVVYDAMLEVRSAVAYATFAVLLVFVPILALPGLAGRLFGPLGIAY 486 + E++ P+ A +M +++ A+ + VF+P+ G G ++ I Sbjct: 420 MMEDKL--PPKEA---TEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 487 ILAVLASLIVALTVTPALAMMLLAGHKPRGAPREPPLARW-------SRHYYERLLRRLG 539 + A+ S++VAL +TPAL LL + W S ++Y + ++ Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 540 RFPKLVMATALLITLGGAGLVPWFGGTFLPDLKEGHLILHVSMLPGTSLDESLRLGTMIA 599 + LI G L +FLP+ +G + + + G + + + ++ + Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 600 EAL--RAVPEVRSVAQHAGRAEAGIDTAGTHSSEIEVDFQP-----GLSGNAQELAERRI 652 + V SV G + +G ++ V +P G +A+ + R Sbjct: 595 DYYLKNEKANVESVFTVNGFSFSG---QAQNAGMAFVSLKPWEERNGDENSAEAVI-HRA 650 Query: 653 RAALANFAGINLSIKTYLTERIEETLSGFNAAVVINVFGPDLDDLETAARDIARELGEVW 712 + L + T +GF+ +I+ G D L A + + Sbjct: 651 KMELGKIRDGFVIPFNMPAIVELGTATGFDFE-LIDQAGLGHDALTQARNQLLGMAAQHP 709 Query: 713 GA-IDIQQQSPPGMPQVNVTLRPTDLQSWGLDAVEVLELIRTAYQGDVVGQAYEGNVVFN 771 + + ++ Q + + Q+ G+ ++ + I TA G V + V Sbjct: 710 ASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKK 769 Query: 772 VIVKLDPEASARPIQIGDMPIRTPSGAYVLLKQIADVYGTSGRYVVLHRNGQRVQTVTAN 831 + V+ D + P + + +R+ +G V + G + NG + Sbjct: 770 LYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGE 829 Query: 832 VAERDLESFVAAAKRKIAKEVKLPPGAHVEFTGAAEAQAKSRRDLVVNASLATLGIVLLL 891 A A +A KLP G ++TG + + S +++ + + L L Sbjct: 830 AAPGTSSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCL 887 Query: 892 ALVTKHWRNLALVLINLPFAFVGGVVAVALTGGVLSLGSMVGFVTLFGIALRNSILMISH 951 A + + W V++ +P VG ++A L + MVG +T G++ +N+IL++ Sbjct: 888 AALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEF 947 Query: 952 YEHLVAVEGRSWSLDLAIQGAADRLVPILMTSLVTGLGLLPLALGAGEPGREIEGPMAIV 1011 + L+ EG+ ++ + RL PILMTSL LG+LPLA+ G G + + I Sbjct: 948 AKDLMEKEGKG-VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG-AGSGAQNAVGIG 1005 Query: 1012 ILGGLLTSMALNLLVLPTLAVRFGRF 1037 ++GG++++ L + +P V R Sbjct: 1006 VMGGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.023 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 11/84 (13%) Query: 50 GAVLDVARLTDLTNSYANAQAQLQTAQAKLEVARLAFDRARDLVQSAAMPKKDAEAAEGT 109 G VL +LT L + Q QA+LE R Q + + + E Sbjct: 121 GDVL--LKLTALGAEADTLKTQSSLLQARLEQTRY---------QILSRSIELNKLPELK 169 Query: 110 FRTDQAALAAAESQVKTLMATARQ 133 + +E +V L + ++ Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKE 193
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.9 bits (90), Expect = 2e-04 Identities = 51/311 (16%), Positives = 93/311 (29%), Gaps = 35/311 (11%) Query: 1291 AKRRAAQPATAPHTLEEEIATVAKYLSLARRSGAELPAVARTRIGAPVPHIRAERGADDR 1350 KR T T A V + E+ V + P P +E + Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPS----VPSNNEEIARVDEAPVPPPAPATPSETT--ET 1039 Query: 1351 SFDATFAKEPVAKESANAARKPSPDVRIFRRRSAAAVPVEP-------SSSAALEPSIVV 1403 + + + +++ A + + R + + + V S S E Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 1404 ATDPPVPPAPEQLPVPPPLRDETPPVAAAADPEPSGADTQPNAAPPA-----------PV 1452 + E+ V E P V + P+ ++T A PA P Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 1453 AQAALESTIDTPVSTEAAEQPQQHAASSESRIHRSLVEMAFQATESATAPRRRLPRRRVM 1512 +Q + + P ++ Q S+ S+VE T + T P Sbjct: 1160 SQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219 Query: 1513 PIAAVGLLAVIGAALSWERAVDYLNAPSTVAAVDPAPPAEAPPRTAEVVQAAPDAKPATA 1572 + R+V + P+T ++ D + A + DA+ A A Sbjct: 1220 KNRHRRSV----------RSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDAR-AKA 1268 Query: 1573 NEERVTVGQSV 1583 + VG++V Sbjct: 1269 QFVALNVGKAV 1279
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 32.3 bits (73), Expect = 0.003 Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 11/81 (13%) Query: 206 TMDAAAPSTQAPSSQR--------TPSAPPVAMRQPQAADPLPLPEGPSAGNPKPVVLAD 257 TM A + Q P P+ +A + P+ PKPV Sbjct: 48 TMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK--- 104 Query: 258 AASAQPKLRVPETVAIPGGTF 278 QPK V + P F Sbjct: 105 KVQEQPKRDVKPVESRPASPF 125
>PERTACTIN#Pertactin signature. Length = 922 Score = 30.1 bits (67), Expect = 0.036 Identities = 16/53 (30%), Positives = 21/53 (39%) Query: 190 GVLPRNLPPIPRQDAQPIPPVLADKPRMKLPPVNKGKPQEPQPQPPPMMDEDP 242 ++ PP P+ QP P P+ PP PQ PQ QP + P Sbjct: 561 SLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPP 613
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 60.0 bits (145), Expect = 8e-13 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 22/224 (9%) Query: 43 GGLGANGAEFALEMASPQVEDNDLPAGPD--SDAAEAAPEQMQQTAE-VKESDAVKDKPT 99 G G + ++ P + A P+ +Q E V E + + Sbjct: 25 HGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIP 84 Query: 100 ETEEEADRVVTMNDPKKPEKEEQQQAVQQAE-----ASVASAAQEESARKALDEAAPPAE 154 E +EA V+ PK K + + V+Q + A+ E+ A ++ Sbjct: 85 EPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATA 144 Query: 155 TAKAPNPGMGKDKQKLTNDWGRKISAYFELHKRYPEGKKRN---GTVKVALVLSRAGKVM 211 P + + L+ +YP + G VKV ++ G+V Sbjct: 145 ATSKPVTSVASGPRALSR-----------NQPQYPARAQALRIEGQVKVKFDVTPDGRVD 193 Query: 212 SASVMQSSGDSVFDQAALSMIHRSDPVPAPPSGLTDDQFSFSID 255 + ++ + ++F++ + + R P P F I+ Sbjct: 194 NVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKIN 237
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.5 bits (66), Expect = 0.002 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 24/98 (24%) Query: 5 AAAACAVGCVGVVIACALFMGLA--AVAGVADAFEAAG--------------------AA 42 A +IA A+ + ++ + +AD F+ A AA Sbjct: 297 AQGLSTSAAAAGLIASAVTLAISPLSFLSIADKFKRANKIEEYSQRFKKLGYDGDSLLAA 356 Query: 43 FAAGDGT--AAIGAVCASLAAAGAGLVAEVCGATVAWP 78 F G A++ + LA+ +G+ A + V P Sbjct: 357 FHKETGAIDASLTTISTVLASVSSGISAAATTSLVGAP 394 Score = 26.1 bits (57), Expect = 0.036 Identities = 8/42 (19%), Positives = 22/42 (52%) Query: 27 AAVAGVADAFEAAGAAFAAGDGTAAIGAVCASLAAAGAGLVA 68 A++ ++ + + +A T+ +GA ++L A G+++ Sbjct: 366 ASLTTISTVLASVSSGISAAATTSLVGAPVSALVGAVTGIIS 407
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.7 bits (69), Expect = 0.017 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 7/101 (6%) Query: 19 DPSSDISGVKV--SAVASLIAVASFSSAEAQQAPLPSVTV----EAPVARPKPA-ASRPT 71 P+ IS V + + AV + P P EAPV KP +P Sbjct: 45 APAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK 104 Query: 72 AEQVRARDAMRRAARQQQQQQVAAPKSNLPPDRNPYSSPAS 112 + V+ + +R + + + + ++ P ++ A+ Sbjct: 105 PKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAA 145
>adhesinb#Adhesin B signature. Length = 310 Score = 270 bits (693), Expect = 1e-92 Identities = 84/310 (27%), Positives = 160/310 (51%), Gaps = 19/310 (6%) Query: 1 MKR---LLPALSLFLALL-----PSVPASAQTRPNVVTSFSILADFARRVGGDRISVTSL 52 MK+ L+ L F+ L S + ++ NVV + SI+AD + + GD+I++ S+ Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVATNSIIADITKNIAGDKINLHSI 60 Query: 53 VGPDSDAHVYTPTPHDAKDVGAARLLIVNGLGLE----GWLPRLQQASGSK--APIIVAT 106 V D H Y P P D K A L+ NG+ LE W +L + + K + Sbjct: 61 VPVGQDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENKDYYAVS 120 Query: 107 QGITP-----RKRGADADPHAWQSVGNARVYVRNIRDALVAADPADAAVFQANAERYLAE 161 +G+ + DPHAW ++ N +Y +NI L DPA+ ++ N + Y+ + Sbjct: 121 EGVDVIYLEGQSEKGKEDPHAWLNLENGIIYAQNIAKRLSEKDPANKETYEKNLKAYVEK 180 Query: 162 LDALDQEVRAEIGKIPPERRKVISTHDAFGYFADAYGIQFIAPLGVSTETEPSARDVAEI 221 L ALD+E + + IP E++ ++++ F YF+ AY + ++TE E + + + Sbjct: 181 LSALDKEAKEKFNNIPGEKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPDQIKTL 240 Query: 222 IVQVRKDKIPAVFLENFNDDRLVGRIAAETGAKIGGTLYSDALSEENGPAPTYIAMVRHN 281 + ++RK K+P++F+E+ DDR + ++ +T I +++D+++E+ +Y +M+++N Sbjct: 241 VEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYAKIFTDSVAEKGEEGDSYYSMMKYN 300 Query: 282 IRALTSALGR 291 + + L + Sbjct: 301 LEKIAEGLSK 310
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 27.0 bits (59), Expect = 0.014 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 13/59 (22%) Query: 44 AQATPE------PSATPAESKPGGTRPTTPAPEP-----ARPDVEVQKEGAKPALPPAP 91 AQ PE P+ PA ++ GTRP P P+P A PD + Q G +P P P Sbjct: 325 AQPLPEVSPAENPANNPAPNENPGTRP-NPEPDPDLNPDANPDTDGQP-GTRPDSPAVP 381
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.3 bits (81), Expect = 7e-05 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 71 LVGTLRLWHVSAGGRDALMLGPLAVAAEARSLGVGAALMNAALMIAASRGHGAVVL---- 126 +G +++ + ++ +AVA + R GVG AL++ A+ A ++L Sbjct: 76 CIGRIKI---RSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQD 132 Query: 127 --LGDAPYYARFGF 138 + +YA+ F Sbjct: 133 INISACHFYAKHHF 146
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 34.0 bits (78), Expect = 8e-04 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 4/110 (3%) Query: 24 VVDLDVVRDNYMNFAKALPDSRVFYAVKANPAPEVLSLLASLGSSFDTATVAEIEMALA- 82 +DL ++ N +A +RV+ VKAN + + S + D + +E A+ Sbjct: 8 SLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLNLEEAITL 67 Query: 83 --AGAT-PDRISYGNTIKKERDIARAYALGIRLFAVDCAAEVEKISRAAP 129 G P + G ++ +I + L + + ++ AP Sbjct: 68 RERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAP 117
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 37.3 bits (86), Expect = 3e-06 Identities = 12/80 (15%), Positives = 30/80 (37%) Query: 8 HAKSARTVRRIVQAALHLYREIGHKKTTVADIARISSMSSANIYRFLEARQAVEDFVVKQ 67 ++ T + I+ AL L+ + G T++ +IA+ + ++ IY + + + + + Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 68 LLEETANAATETARNGGSAL 87 E Sbjct: 66 SESNIGELELEYQAKFPGDP 85
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.5 bits (115), Expect = 2e-09 Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 9/161 (5%) Query: 1 MFLEKGYRSASIDDISEMAPASKPTIYAHFPGKEALFAAVVARTISGLTDFEGFTPEGRT 60 +F ++G S S+ +I++ A ++ IY HF K LF+ + + S + + E Sbjct: 23 LFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFP 82 Query: 61 IEDKLMSLGTVIIERVFEESLGMVRATIAEAPRFPELSRNVHDAARDRSLTAVSQLLNDA 120 + + + E + ++ +T+ E R + H + V Q + Sbjct: 83 GDP---------LSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNL 133 Query: 121 TQKLARAPKGPFSAKRSRTTAQIFLDLILLPMLFRSLLGET 161 + + L ++ R + Sbjct: 134 CLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.7 bits (98), Expect = 3e-06 Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 9/118 (7%) Query: 79 SGRVLARYADVGSHVRAGEVLAVLDPAEQQADVDAATAAVTSAEA-QLRVAMATFERQR- 136 + V G VR G+VL L +AD +++ A Q R + + + Sbjct: 104 NSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELN 163 Query: 137 SLIASGFTTRPAYDQAQEGLR-----LAESTLEAARAQLGTSKEALGYTALRAEADGV 189 L P + E L + + Q + L RAE V Sbjct: 164 KLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL--DKKRAERLTV 219 Score = 39.8 bits (93), Expect = 1e-05 Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 6/119 (5%) Query: 99 LAVLDPAEQQADVDAATAAVTSAEAQLRVAMATFERQRSLIASGFTTRPAYDQAQEGLRL 158 AVL+ + + S Q+ + + + + L+ F Q + Sbjct: 252 HAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNI 311 Query: 159 AESTLEAARAQLGTSKEALGYTALRAEADG-VITARNLEAGQVVPAAQPVFSLARDGER 216 TLE A+ +E + +RA V + G VV A+ + + + + Sbjct: 312 GLLTLELAKN-----EERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDT 365
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.7 bits (85), Expect = 1e-04 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 13/122 (10%) Query: 96 LAVRSARAQLAKAQAQLATAQATENRQRTLINSDATTKQTLDNAEQ--------ARAGAE 147 AV + +A +L ++ + + I + K+ Q Sbjct: 252 HAVLEQENKYVEAVNELRVYKSQLEQIESEI---LSAKEEYQLVTQLFKNEILDKLRQTT 308 Query: 148 GTVAQEQANLTKAIEQLGYAQIKADFGGVVIAVGA-EVGQVVSPGQSVVTVARPEIREAV 206 + L K E+ + I+A V + G VV+ ++++ + PE Sbjct: 309 DNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIV-PEDDTLE 367 Query: 207 VD 208 V Sbjct: 368 VT 369 Score = 33.3 bits (76), Expect = 0.001 Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 10/91 (10%) Query: 77 GDLVSEGQIVGAIDPTALDLAVRSARAQLAKAQAQLATAQATENRQRTL---INSDATTK 133 G+ V +G ++ + A A K Q+ L A+ + R + L I + + Sbjct: 115 GESVRKGDVLLKLTAL-------GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPE 167 Query: 134 QTLDNAEQARAGAEGTVAQEQANLTKAIEQL 164 L + + +E V + + + + Sbjct: 168 LKLPDEPYFQNVSEEEVLRLTSLIKEQFSTW 198
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 485 bits (1250), Expect = e-156 Identities = 243/1041 (23%), Positives = 440/1041 (42%), Gaps = 56/1041 (5%) Query: 64 LSDWALGHRSLVWYFMIAFMVAGLFAYLQLGRQEDPDFTIKTMVIQAQWPGASPEEMTRQ 123 ++++ + W I M+AG A LQL + P + + A +PGA + + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 124 VTDRIEKKLEELESLDYTKSVTV-AGQTTVFVYLRDSTKAIDVKPTWVRIRNMIADIKGD 182 VT IE+ + +++L Y S + AG T+ + + T D V+++N + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGT---DPDIAQVQVQNKLQLATPL 117 Query: 183 FPQGVIGPG-FNDRFGDVFGNVYAFTSDG--LSQRQLRDQVED-IRAKVLTVPAVGKVDI 238 PQ V G ++ + V F SD +Q + D V ++ + + VG V + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 239 LGAQDEV-IYLEFSTRKIAALGLDVHAIMNSLQGQNAVAPSGLFQEGPE------RISVR 291 GAQ + I+L+ + L ++N L+ QN +G P S+ Sbjct: 178 FGAQYAMRIWLDAD--LLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235 Query: 292 VNGQFTSEASLKAVNLRINDRFFP--LTDVATITRGYLDPARTLFRYNGQPAIALAIGMK 349 +F + V LR+N L DVA + G + + R NG+PA L I + Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKLA 294 Query: 350 SGANLLQFGKALKEQVNKVIADLPIGIGVHLVADQPVVVEHAVSGFTEALFEAVIIVLGI 409 +GAN L KA+K ++ ++ P G+ V D V+ ++ + LFEA+++V + Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 410 SFLSLG-LRAGLVVAIAIPLVLAITFVVMAYSGISLQRISLGALIIALGLLVDDAMIAVE 468 +L L +RA L+ IA+P+VL TF ++A G S+ +++ +++A+GLLVDDA++ VE Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 469 MMV-ARLEIGDPLEKAATHVYTSTAFPMLTGTLVTVAGFIPIGLNSSNAGEFTFTLFVVI 527 + +E P ++A + ++ +V A FIP+ + G + I Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 528 AVSLIVSWIVAVLFTPLLGVTILPSQMKGHHEDKGRLARMFSRLLLFCMHH--------- 578 ++ +S +VA++ TP L T+L HHE+KG F+ ++H Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 579 --RWSTIGVTVAAFLLAVVGLQFVQQQFFPSSDRAELVIDWNLPQNASITDTNAQMARFE 636 + + VV + F P D+ + LP A+ T + + Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 637 REQLQAN-DSVDHWSTYVGTG----APRFVLSF-DLQTTNTWFGQQVIVTKGGIAARDRL 690 L+ +V+ T G A ++F L+ G + + + R ++ Sbjct: 595 DYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDE--NSAEAVIHRAKM 652 Query: 691 KSQFENYLRTTFPGTDTYVKLLEVGPPVGRPVQYRLSGPDIAKVRDLSQKLAGIVRSSP- 749 + P + L + + +G + +L G+ P Sbjct: 653 ELGKI-RDGFVIPFNMPAIVELGTATGFDFELIDQ-AGLGHDALTQARNQLLGMAAQHPA 710 Query: 750 DLGNVVFDWMEPARVVKVDVLQDKARQLGVTSEDIATTLNSVFEGSPITQVRDSIYLVNV 809 L +V + +E K++V Q+KA+ LGV+ DI T+++ G+ + D + + Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 810 MGRATAPERASIDTLRDLQLVGLGGQSVPLGAIANLRYELEQPTIWRRARIPTITLKAAV 869 +A A R + + L + G+ VP A + P + R +P++ + Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSME----I 826 Query: 870 VGNVQPKTVVDQLAPKVAEFTKGLPAGYSVRIGGSVEESAKSQAPIIAVVPLMLFVMATV 929 G P T + LPAG G + S A+V + V+ Sbjct: 827 QGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLC 886 Query: 930 LMVQLQSFARLFLVFAVAPLAVIGVVMAMLPSGAPLGFVAILGVLALIGILVRNSVILIV 989 L +S++ V V PL ++GV++A ++G+L IG+ +N+++++ Sbjct: 887 LAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVE 946 Query: 990 QIEDLK-KEGRPAWEAVVEATEHRMRPILLTAAAASLALIPIA------REIFWGPMAYA 1042 +DL KEG+ EA + A R+RPIL+T+ A L ++P+A + Sbjct: 947 FAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQN-AVGIG 1005 Query: 1043 MMGGIIVGTLLTLLFLPALYV 1063 +MGG++ TLL + F+P +V Sbjct: 1006 VMGGMVSATLLAIFFVPVFFV 1026 Score = 87.6 bits (217), Expect = 2e-19 Identities = 83/518 (16%), Positives = 179/518 (34%), Gaps = 41/518 (7%) Query: 574 FCMHHRWSTIGVTVAAFLLAVVGLQFVQQQFFPSSDRAELVIDWNLPQNASITDTNAQMA 633 F + + + + + + + +P+ + + N P A + Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQTVQDTVT 62 Query: 634 RFEREQLQANDSVDH-WSTYVGTGAPRFVLSFDLQTTNTWFGQQVIVTKGGIAARDRLKS 692 + + + D++ + ST G+ L+F T QV V A L Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDI--AQVQVQNKLQLATPLLPQ 120 Query: 693 QFENYLRTTFPGTDTYVKLLEVGPPVGRPVQYRLSGPDIAKVRDLSQKLAGIVRSSPDLG 752 + + + + +Y+ + Q +S + V+D +L G+ G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGV-------G 173 Query: 753 NVVFDWMEPARVVKVDVLQDKARQLGVTSEDIATTLNSVFEGSPITQVRDSIYLVNVMGR 812 +V + A + +D D + +T D+ L + Q+ + L Sbjct: 174 DVQLFGAQYAMRIWLD--ADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 813 ATAPERASIDTLRDLQ----LVGLGGQSVPLGAIANLRYELEQPTIWRRAR-IPTITLKA 867 A+ + + V G V L +A + E + R P L Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291 Query: 868 AVVGNVQPKTVVDQLAPKVAEFTKGLPAG--------YSVRIGGSVEESAKSQAPIIAVV 919 + + K+AE P G + + S+ E K+ I +V Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351 Query: 920 PLMLFVMATVLMVQLQSFARLFLVFAVA-PLAVIGVVMAMLPSGAPLGFVAILGVLALIG 978 L++++ LQ+ R L+ +A P+ ++G + G + + + G++ IG Sbjct: 352 FLVMYLF-------LQNM-RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIG 403 Query: 979 ILVRNSVILIVQIED-LKKEGRPAWEAVVEATEHRMRPILLTAAAASLALIPIA-----R 1032 +LV ++++++ +E + ++ P EA ++ ++ A S IP+A Sbjct: 404 LLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGST 463 Query: 1033 EIFWGPMAYAMMGGIIVGTLLTLLFLPALYVAWFKIHP 1070 + + ++ + + L+ L+ PAL K Sbjct: 464 GAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVS 501
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1068 bits (2763), Expect = 0.0 Identities = 419/1042 (40%), Positives = 654/1042 (62%), Gaps = 16/1042 (1%) Query: 3 LSKFFIDRPIFAGVLSTLIFLGGLIALFAMPISEYPDVVPPSVVVRATYPGANPKVIAET 62 ++ FFI RPIFA VL+ ++ + G +A+ +P+++YP + PP+V V A YPGA+ + + +T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VATPIEEQINGVENMLYMSSQATTDGAMTLTVTFKLGTDPDKATQLVQNRVQQAEPRLPN 122 V IE+ +NG++N++YMSS + + G++T+T+TF+ GTDPD A VQN++Q A P LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 123 VVRQLGVITKKSSPDLTMVVHLISPNGRYDTTYLRNYAVLNVKDRLARIDGVGDVQLFGA 182 V+Q G+ +KSS MV +S N + +Y NVKD L+R++GVGDVQLFG Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 183 GDYSMRVWVDPQKAAEHGLSASDIVKAIQAQNVEAAAGVVGASPSVKGLDLQLSVNAEGR 242 Y+MR+W+D ++ L+ D++ ++ QN + AAG +G +P++ G L S+ A+ R Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 243 LSNEDQFADIVVKTGAHGEITRLRDVARIELGASEYGLRSLLDNKQAVAIPIFQAPGSNA 302 N ++F + ++ + G + RL+DVAR+ELG Y + + ++ K A + I A G+NA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 303 LQISDNVRATMAEIAKTMPEGVEYHIVYDPTQFVRSSIEAVVHTLFEAIVLVVIVVILFL 362 L + ++A +AE+ P+G++ YD T FV+ SI VV TLFEAI+LV +V+ LFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 363 QTWRASIIPLLAVPVSIVGTFAVMHLFGFSINALSLFGLVLAIGIVVDDAIVVVENVER- 421 Q RA++IP +AVPV ++GTFA++ FG+SIN L++FG+VLAIG++VDDAIVVVENVER Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 422 NIESGLSPRDATYQAMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYKQFALTIAISTV 481 +E L P++AT ++M ++ G ++ IA+VL AVF+P+AF G TG Y+QF++TI + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 482 ISAVNSLTLSPALSALLLKGHHDPKDRLTRFLDRALGWFFRGFNRTFVRASDNYSGSVSK 541 +S + +L L+PAL A LLK ++ G FF FN TF + ++Y+ SV K Sbjct: 480 LSVLVALILTPALCATLLKP-------VSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGK 532 Query: 542 VITGKAAVMILYVLLIGATGLLFKQVPGGFVPGQDKQYLVGFARLPDGATLDRSEEVIRK 601 ++ +++Y L++ +LF ++P F+P +D+ + +LP GAT +R+++V+ + Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 602 MSDIALT--QPGVESSIAFPGLSISGFTNSSNAGIVFSGLKPFDERKDPSLSGGAIALQL 659 ++D L + VES G S SG + NAG+ F LKP++ER S A+ + Sbjct: 593 VTDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAVIHRA 650 Query: 660 NKKYAGIQDAFIAMFPPPPVNGLGTIGGFKLQIEDRAGRGYEALNDVTAAFMGALQKSP- 718 + I+D F+ F P + LGT GF ++ D+AG G++AL +G + P Sbjct: 651 KMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 719 EIAGAFSSFQVNVPQLFADIDRTKALQLGVPVTEVFNTLQIYLGSYYVNDFNKFGRTYSV 778 + + + Q ++D+ KA LGV ++++ T+ LG YVNDF GR + Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 779 RVQADAPFRARADDIRQLKVRSSSGEMVPLSALLNVRQSAGPERAIRYNGFLSSDINAAA 838 VQADA FR +D+ +L VRS++GEMVP SA G R RYNG S +I A Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA 830 Query: 839 APGFSSGQAQAAAEKIAAEVLPPGFAFEWTDLTYQEFIAGNSGLWVFPLAILLVFLVLAA 898 APG SSG A A E +A++ LP G ++WT ++YQE ++GN + ++ ++VFL LAA Sbjct: 831 APGTSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 899 LYESLTLPLAILMIVPMALLAAMAGVYISKGDNNIFTQIGLIVLVGLSAKNAILIVEFAR 958 LYES ++P++++++VP+ ++ + + N+++ +GL+ +GLSAKNAILIVEFA+ Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 959 EL-EFAGRSPLRAAIEASRLRLRPILMTSMAFIMGVLPLVLSTGAGSEMRRAMGVAVFSG 1017 +L E G+ + A + A R+RLRPILMTS+AFI+GVLPL +S GAGS + A+G+ V G Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 1018 MIGVTVFGLFLTPVFYVLLRTL 1039 M+ T+ +F PVF+V++R Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRC 1031 Score = 79.1 bits (195), Expect = 7e-17 Identities = 67/326 (20%), Positives = 122/326 (37%), Gaps = 16/326 (4%) Query: 738 IDRTKALQLGVPVTEVFNTL-----QIYLGSYYVNDFNKFGRTYSVRVQADAPFRARADD 792 +D + + +V N L QI G G+ + + A F+ ++ Sbjct: 188 LDADLLNKYKLTPVDVINQLKVQNDQIAAGQL-GGTPALPGQQLNASIIAQTRFKN-PEE 245 Query: 793 IRQLKVRSS-SGEMVPLSALLNVRQSAGPER-AIRYNGFLSSDINAAAAPGFSSGQ-AQA 849 ++ +R + G +V L + V R NG ++ + A G ++ A+A Sbjct: 246 FGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKA 305 Query: 850 AAEKIA--AEVLPPGFAFEWTDLTYQEFIAGNSGLWVFPL--AILLVFLVLAALYESLTL 905 K+A P G + F+ + V L AI+LVFLV+ +++ Sbjct: 306 IKAKLAELQPFFPQGMKVLYP-YDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRA 364 Query: 906 PLAILMIVPMALLAAMAGVYISKGDNNIFTQIGLIVLVGLSAKNAILIVE-FARELEFAG 964 L + VP+ LL A + N T G+++ +GL +AI++VE R + Sbjct: 365 TLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDK 424 Query: 965 RSPLRAAIEASRLRLRPILMTSMAFIMGVLPLVLSTGAGSEMRRAMGVAVFSGMIGVTVF 1024 P A ++ ++ +M +P+ G+ + R + + S M + Sbjct: 425 LPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLV 484 Query: 1025 GLFLTPVFYVLLRTLTGMKPLTQHGG 1050 L LTP L + GG Sbjct: 485 ALILTPALCATLLKPVSAEHHENKGG 510
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.6 bits (108), Expect = 2e-07 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 10/97 (10%) Query: 96 AEVDRAQAQLEAARARAAFAANELERGAQLVGNSIVTKRDYDQRDNGNREAIANVKAAEA 155 E+ ++QLE + A E + QL N I+ K R+ N+ Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKL---------RQTTDNIGLLTL 316 Query: 156 SLQTAKLNLDYTQVRAPVDGRVGRIEV-TVGNLVAAG 191 L + + +RAPV +V +++V T G +V Sbjct: 317 ELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353 Score = 39.8 bits (93), Expect = 1e-05 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 5/129 (3%) Query: 58 RVEVRPRVAGAILSANFTEGSLVKAGDVLFKIDPAPYAAEVDRAQ-----AQLEAARARA 112 E++P + EG V+ GDVL K+ A+ + Q A+LE R + Sbjct: 96 SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQI 155 Query: 113 AFAANELERGAQLVGNSIVTKRDYDQRDNGNREAIANVKAAEASLQTAKLNLDYTQVRAP 172 + EL + +L ++ + + ++ + + Q + L+ + RA Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAE 215 Query: 173 VDGRVGRIE 181 + RI Sbjct: 216 RLTVLARIN 224
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 59.6 bits (144), Expect = 3e-13 Identities = 25/200 (12%), Positives = 55/200 (27%), Gaps = 5/200 (2%) Query: 10 DRDTALDQAMEVFWRHGYEGATIAQLTEAMGINPPSLYAAFGSKEALLKAALDRYTARRE 69 R LD A+ +F + G ++ ++ +A G+ ++Y F K L + + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 70 AWMEEVLSAPTAREVTARMLMGVAEKQTDPSNPPGCLLVQGGLACGSGSANVPFELAARR 129 E A + + + + L+ + + + Sbjct: 72 ELELE-YQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 130 AQTEEQLRHRF----ERAKAEGDLAEAADPAALARYVSAVITGMSVMASSGADREALAQV 185 + R + L A + I+G+ L + Sbjct: 131 RNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKE 190 Query: 186 AEVAIRSVEEQSVRAPIAAN 205 A + + E + P N Sbjct: 191 ARDYVAILLEMYLLCPTLRN 210
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 52.6 bits (126), Expect = 2e-09 Identities = 64/408 (15%), Positives = 151/408 (37%), Gaps = 26/408 (6%) Query: 35 SFLANFDSRLTSVGLPDLRGAFSLGFDEGAWLSTA-----AIGSQILIAPAVAWLATVFG 89 SF + + + +V LPD+ F+ W++TA +IG+ + L+ G Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGK-----LSDQLG 77 Query: 90 LRRVLGVPSLVYAALSLIIPFVRDYPTLIVLAILHGMLLGTFVPATLMIIF-RNLPIRWW 148 ++R+L ++ S+I + +L+++A PA +M++ R +P Sbjct: 78 IKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENR 137 Query: 149 LPAISIYAIRVGFALDTSTSLVGFYVEHLGWQWLYWQSVVLAPLMALMVYLGTPAEPVNR 208 A + V ++ G ++ W +L ++ + ++ L + Sbjct: 138 GKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKG 197 Query: 209 TLLRNADWGGMLLLGSAVSMIYAGLDQGNRLDWLQSGTVVALLGGGAVLFVLFLVNEALS 268 D G++L+ + + + S + F++F+ + Sbjct: 198 HF----DIKGIILMSVGIVFFMLFTTSYSISFLIVS----------VLSFLIFVKHIRKV 243 Query: 269 PQPWAHFNVLFSRNIGLSLAVILLYTLTSLSNASLVPNFLATITQLRPEQSGSLLLVYGA 328 P+ + + + + + T S+VP + + QL + GS+++ G Sbjct: 244 TDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGT 303 Query: 329 LPLIVLVPLSIWMLRHLDPRIVVVLGLGAFAAANLLGTQLTHAWAREDFIVIVLLQSFGQ 388 + +I+ + ++ P V+ +G+ F + + L +I++ G Sbjct: 304 MSVIIFGYIGGILVDRRGPLYVLNIGV-TFLSVSFLTASFLLETTSWFMTIIIVFVLGGL 362 Query: 389 AFTLLPIIILALSNSDPARATSFAAYIQIMRLGGAEIGVALMGTWLRV 436 +FT I + S+ A + + + G+A++G L + Sbjct: 363 SFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 103 bits (258), Expect = 2e-26 Identities = 76/450 (16%), Positives = 140/450 (31%), Gaps = 93/450 (20%) Query: 6 SNVDAASRTASTPPSSAAPTAGLWARLAI--------PLLAVIVALAFVALATLRWNAWT 57 S + TP L A L + P L + F+ +A + + Sbjct: 20 SETWKIRKQLDTPVREKDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFI-LSVLG 78 Query: 58 GTATTQTTNDAYVRADLTQ-LSSRVAGEVLKVAVSDFQRVKAGDLLIQIDP----ADY-- 110 T N + ++ + V ++ V + + V+ GD+L+++ AD Sbjct: 79 QVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLK 138 Query: 111 ------------------------------------------EAQVSQAEATVEAAQAAL 128 E +V + + ++ + Sbjct: 139 TQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTW 198 Query: 129 DNLSNQIELQYAT-IAQAEAQQVSAGAAEVQARQEEERQ---QSLSQSEAGTRQRLEQAT 184 N Q EL A+ E +R E+ R SL +A + + + Sbjct: 199 QNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQE 258 Query: 185 AAYAKAQADVRASRAVIAAQRHQL----------------EVLTGTKKQRGADLAGAKAA 228 Y +A ++R ++ + ++ E+L +Q ++ Sbjct: 259 NKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILD-KLRQTTDNIGLLTLE 317 Query: 229 LAAARLKLGYTRITAPFDGVVGQRQVQA-GDYVNVGSSLIAVVPLPQVFIV-ANYKETQL 286 LA + + I AP V Q +V G V +L+ +VP V A + + Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDI 377 Query: 287 THVAPGQPVDITVDTFPGE---QMHGRVERIAPASGSQFALLPPDNATGNFTKVVQRIPV 343 + GQ I V+ FP + G+V+ I + D G V+ I Sbjct: 378 GFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEE 430 Query: 344 RIALDPNQPLLARLLPGMSVVTHIHTAGRT 373 N+ + L GM+V I T R+ Sbjct: 431 NCLSTGNKNI--PLSSGMAVTAEIKTGMRS 458
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 148 bits (374), Expect = 5e-44 Identities = 77/345 (22%), Positives = 122/345 (35%), Gaps = 72/345 (20%) Query: 7 ILIAGGAGYIGAHCSKAVADAGFTPICYDNLT--------------LGHRSFVQWGPLVV 52 L+ G AG+IG H SK + +AG + DNL L F Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQ----FHK 58 Query: 53 GDIADSIKVASTIRQYDVQAVMHFAASSAVGESVADPQKYYLNNVAGTLGLLQGMREAGC 112 D+AD + + V AV S+ +P Y +N+ G L +L+G R Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 113 TRLVFSSTGAVYGNAGREPIPESAAGPT---VNPYGRSKYMIEQILSDYRAAYGFSAIAL 169 L+++S+ +VYG +P S V+ Y +K E + Y YG A L Sbjct: 119 QHLLYASSSSVYG--LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL 176 Query: 170 RYFNACGADASGAIGELRDPETHLIPRALMAILGHVPDFAIFG-----TDYETP----DG 220 R+F G P PD A+F + ++ G Sbjct: 177 RFFTVYG------------------PWGR-------PDMALFKFTKAMLEGKSIDVYNYG 211 Query: 221 TAVRDYIHVDDLAAAHIAAIGRLMEGHRGGA---------------YNLGTGSGYSVREI 265 RD+ ++DD+A A I + YN+G S + + Sbjct: 212 KMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDY 271 Query: 266 VDAIRNETGEQVPLVYRERRPGDPPVLVADPRRAEQELGFKPRRS 310 + A+ + G + +PGD AD + + +GF P + Sbjct: 272 IQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETT 316
>PF06580#Sensor histidine kinase Length = 349 Score = 46.0 bits (109), Expect = 1e-07 Identities = 40/242 (16%), Positives = 83/242 (34%), Gaps = 40/242 (16%) Query: 174 FLTRAADIVGIAIERLHEEARLREALDHQAMLTREMS--------HRVKNSLASVVAMLR 225 + G + +++A + + ++ H + N+L ++ A++ Sbjct: 128 TFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALIL 187 Query: 226 VQAFGAGSVEAK------QALGEAGSRVAAIAQVHDHLSRASRIGSIDVDVFLTDFCKRL 279 A + +L + +R ++A + ++ SI F RL Sbjct: 188 EDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQ-------FEDRL 240 Query: 280 QLVAGAHVLRCDADPIRLPADLAVPLGLLINELVSNAVKHAYPG--QDGPIDISARDVGG 337 Q + + D+ VP +L+ LV N +KH Q G I + G Sbjct: 241 QFE-----NQINPAI----MDVQVP-PMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNG 290 Query: 338 CLQLSVADQGVGLPAGFDIDQTRTSLGFRMINGMVQQLHGC---LKVSANQPTGTRVLFE 394 + L V + G + T G + + +Q L+G +K+S + + Sbjct: 291 TVTLEVENTG---SLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLS-EKQGKVNAMVL 346 Query: 395 LP 396 +P Sbjct: 347 IP 348
>FIMREGULATRY#Escherichia coli: P pili regulatory PapB protein signature. Length = 104 Score = 28.0 bits (62), Expect = 0.012 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 17/90 (18%) Query: 99 QHALEP-NIGAAYFWLLL----VKGGRDLQTHALEDWMERGYAALQVMENHLKTNDYF-- 151 + L P ++ +F+LL+ + R + A++D++ G++ +V E + N YF Sbjct: 20 ESVLLPGSMSEMHFFLLIGISSIHSDRVIL--AMKDYLVGGHSRKEVCEKYQMNNGYFST 77 Query: 152 AARQL-----TVADIALYGYTHVADRCDFD 176 +L A +A Y YT + FD Sbjct: 78 TLGRLIRLNALAARLAPY-YTDESS--AFD 104
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 29.0 bits (65), Expect = 0.035 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 185 AELKALTEVLVKHP--HVWIMTDDMYEHLVYDDFVFTTPAQVEPSLFDRTLTVNGV 238 +E+ L +VL+ P + +T + ++ ++DD + A+ E +F L N V Sbjct: 12 SEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNNLV 67
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 308 bits (790), Expect = 3e-98 Identities = 129/641 (20%), Positives = 254/641 (39%), Gaps = 45/641 (7%) Query: 2 EAILARTGAIPRAGSVDAGTSVGDASAEARHHKMSVAMTAATTTFMGDSYTFLDCPGSIE 61 E++L +GAI GSVD GT+ D + R +++ + + +D PG ++ Sbjct: 21 ESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD 80 Query: 62 FAHDMRAALPAVDAAIVVCEADEKKLPQLQIILRELEELRIPRFLFLNKIDRANARIRET 121 F ++ +L +D AI++ A + Q +I+ L ++ IP F+NKID+ + Sbjct: 81 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDL--- 137 Query: 122 LATLQPASRVPLVLRQIPIWNGELIEGFVDLALERAFIYREHKASEVIALEGGNLDREKE 181 V + I E + + + ++ +Y + E Sbjct: 138 ----------STVYQDI----KEKLSAEI-VIKQKVELYPNMCVTNFTESE--------- 173 Query: 182 ARFSMLEKLADHDDSLMEQLLEDIPPPRDAVFDDLARELRDGLICPVLLGSALRENGVLR 241 + + + +D L+E+ + + + + + + PV GSA G+ Sbjct: 174 ----QWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDN 229 Query: 242 LMKALRHEAPGIAETAKRLGVTETKEALGYVFKTLHLQHGGKLSLTRVLSGHLDDGATLH 301 L++ + ++ + E G VFK + + +L+ R+ SG L ++ Sbjct: 230 LIEVITNKFYSSTHRGQ-------SELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVR 282 Query: 302 AASGEAARVSGILAATGAYESKRAAAEAGDTVALGKLDVVKTGDTIATGKTAPQALVKID 361 + E +++ + + K A +G+ V L + + +K + K PQ +I+ Sbjct: 283 ISEKEKIKITEMYTSINGELCKIDKAYSGEIVIL-QNEFLKLNSVLGDTKLLPQR-ERIE 340 Query: 362 PCPPVLALSIAALDRKDDVKLGQALQRLHEEDPSLTMVQNPRTHDTVLWGQGEMHLRVAL 421 P+L ++ + L AL + + DP L + TH+ +L G++ + V Sbjct: 341 NPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTC 400 Query: 422 ERLRDRFGVHVKSQAPAIGYQETIRKPITQRGRHKKQSGGHGQFGDVVLDIKPLPRGEGF 481 L++++ V ++ + P + Y E K + + + + L + PLP G G Sbjct: 401 ALLQEKYHVEIEIKEPTVIYMERPLK--KAEYTIHIEVPPNPFWASIGLSVSPLPLGSGM 458 Query: 482 QFTEKVVGGAVPRNYIPAVEEGVVDALARGPLGFPVIDVAVTLTDGSYHSVDSSDLAFRT 541 Q+ V G + +++ AV EG+ +G G+ V D + G Y+S S+ FR Sbjct: 459 QYESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRM 518 Query: 542 AARVGVSEGLPQCQPVLLEPIHTVEIVCPTEATARINAILSARRGQILSFDTRDGWPGWD 601 A + + + L + LLEP + +I P E +R I+ ++ Sbjct: 519 LAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEV--- 575 Query: 602 CVRAMMPEAEIGELIVELRSATAGAGSFTRQFDHMAEVTGR 642 + +P I E +L T G + TG Sbjct: 576 ILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGE 616
>PF06580#Sensor histidine kinase Length = 349 Score = 39.5 bits (92), Expect = 1e-05 Identities = 51/329 (15%), Positives = 104/329 (31%), Gaps = 46/329 (13%) Query: 25 ALLGYAIAIGATFIAFVLRLALVDTLPDGFPYLTFFPAVILTAFFCGFGPGVLCAVLSGL 84 +L+G + + +F+ R + L G L PA ++ + +L+ + Sbjct: 49 SLMGLVLTHA--YRSFIKRQGWL-KLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFI 105 Query: 85 LAWSVFIPGSGYQTALALGFYAIIVAVDITL----IHIMHEAAQRLRQERAVSESLYDNQ 140 V AL++ F ++V +L H Q + ++ + Q Sbjct: 106 NTKPVAF---TLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQ 162 Query: 141 RVLFQELQHRVANNIQFIAGLLMMQKRQAIADPSRAIGILDEAQARLQTISRIHRMLHDP 200 L+ ++ N F+ L + + DP++A +L L + R + Sbjct: 163 ---LMALKAQI--NPHFMFNALNNIRALILEDPTKAREMLT----SLSELMR-----YSL 208 Query: 201 GRMDVDIGPYLQEI--CNDVLDSSGAR-----EVTCVVDFVPAKLDLTRLTALSLLVVEL 253 + E+ + L + + + ++ + + +LV L Sbjct: 209 RYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINP-----AIMDVQVPPMLVQTL 263 Query: 254 VTNALKHAFGP-GQAGTIRVNMRPLDATHYALTISDDGQGMSADADPGAGDSLG-----W 307 V N +KH Q G I + D L + + G + G L Sbjct: 264 VENGIKHGIAQLPQGGKILLKGT-KDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERL 322 Query: 308 RICQGLAAQLNGRLTYSSDGGTTVRLEFP 336 ++ G AQ+ G + P Sbjct: 323 QMLYGTEAQIK---LSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 423 bits (1088), Expect = e-147 Identities = 161/471 (34%), Positives = 243/471 (51%), Gaps = 37/471 (7%) Query: 2 RLLIVGTLKGQLTAATKIAMENGATVTHAEDNEQAMRVLRGGKGADLLLVDVAL---DIR 58 +L+ T + G V + R + G G DL++ DV + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMPDENAF 63 Query: 59 DLVMRLDAEHIHVPIVACGITSDARAAVAAIHAGAKEYIPLPPDPELIAAV--------- 109 DL+ R+ +P++ + A+ A GA +Y+P P D + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 110 -----LAAVANDSRDLVYRDEAMAKVIKLAQQIAGSDASVMITGESGTGKEVLARYVHSR 164 L + D LV R AM ++ ++ ++ +D ++MITGESGTGKE++AR +H Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183 Query: 165 SLRAKRSFISINCAAIPEHLLESELFGHEKGAFTGAVARRVGKFEEANGGTLLLDEISEM 224 R F++IN AAIP L+ESELFGHEKGAFTGA R G+FE+A GGTL LDEI +M Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 225 DVRLQSKLLRAIQERVIDRVGGTRPVPVDIRIIATSNRNLADAVREGTFREDLLFRLNVV 284 + Q++LLR +Q+ VGG P+ D+RI+A +N++L ++ +G FREDL +RLNVV Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303 Query: 285 NLKIPPLRERPADILELAQHFARKYSEANAVPLRPISAEAKRVLTTNRWPGNVRELENTL 344 L++PPLR+R DI +L +HF ++ + R EA ++ + WPGNVRELEN + Sbjct: 304 PLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKR-FDQEALELMKAHPWPGNVRELENLV 362 Query: 345 HRAVLMAQGDEIGPDAILTPDGARLDIGKTQPAVA-----HATMAAEQVTR--------- 390 R + D I + I + + + A A + A E+ R Sbjct: 363 RRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDA 422 Query: 391 ----ALVGRTVADVERDLILETLKHCLGNRTHAANILGISIRTLRNKLNEY 437 L R +A++E LIL L GN+ AA++LG++ TLR K+ E Sbjct: 423 LPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 111 bits (280), Expect = 2e-31 Identities = 21/128 (16%), Positives = 55/128 (42%) Query: 6 SLLIVEDDDGFARTLKRSFERRGYEAVVAASLEEVDEALKEKTFGYAVVDLKLGGASGLV 65 ++L+ +DD L ++ R GY+ + ++ + + V D+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 CVEKLHAHDPEMLIVVLTGFASIATAVEAIKLGACHYLAKPSNTDDIEEAFRKAEGNAQI 125 + ++ P++ ++V++ + TA++A + GA YL KP + ++ +A + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 126 ALPERSTS 133 + Sbjct: 125 RPSKLEDD 132 Score = 51.0 bits (122), Expect = 4e-10 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 106 PSNTDDIEEAFRKAEGNAQIALPE---RSTSIKTLEWERIHQTLIETDFNISEAARRLGM 162 S + +EE R+ + ALP + +E+ I L T N +AA LG+ Sbjct: 402 LSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGL 461 Query: 163 HRRTLARKLEK 173 +R TL +K+ + Sbjct: 462 NRNTLRKKIRE 472
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.4 bits (105), Expect = 6e-07 Identities = 23/183 (12%), Positives = 67/183 (36%), Gaps = 10/183 (5%) Query: 41 EADFGRREAQLKAAQEQIAQAKAAIDQQVAAKL-------KAERAAIAEAEAAKARQAVA 93 EAD + ++ L A+ + + + KL + ++E E + + Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIK 192 Query: 94 DEMGNRDRQLAELHEAILSKDAKLADAQKAQAEMMRKQRELDEARRELDLTVEKKVQESL 153 ++ Q + + K A+ A+ ++++R + ++ K + Sbjct: 193 EQFSTWQNQKYQKELNLDKKRAERLTVL-ARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 154 VAVRDKARLEAEEGLKAKVAEKETQIAGMQRQIEELRRKAEQGSQQLQGEALEIELESQL 213 AV ++ E ++ ++Q+ ++ +I + + + +Q + E L+ ++ Sbjct: 252 HAVLEQENKYVE--AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTD 309 Query: 214 RAR 216 Sbjct: 310 NIG 312
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 488 bits (1257), Expect = e-158 Identities = 244/1047 (23%), Positives = 443/1047 (42%), Gaps = 69/1047 (6%) Query: 6 LSDWALEHRSLVWYFMIAFMAAGLYSYLHLGREEDPSFTIKTMLIQAKWPGASAEEMTRQ 65 ++++ + W I M AG + L L + P+ + + A +PGA A+ + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 66 VTERIEKKLEELPALDYTKSLTVP-GQTTVFVNLRDTTKARDVVPTWLQVRNLINDIKGD 124 VT+ IE+ + + L Y S + G T+ + + T D +QV+N + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGT---DPDIAQVQVQNKLQLATPL 117 Query: 125 FPSGVVGPG-FNDRFGDVFGNIYAFTSDG--LSQRQLRDRVEE-VRAKVLTVPNVGRVDI 180 P V G ++ + + F SD +Q + D V V+ + + VG V + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 181 VGAQNEV-IYLEFSPRKVAALGIDQRTILNALQAQNAVSPSGVLQAGPE------RVAVR 233 GAQ + I+L+ + + ++N L+ QN +G L P ++ Sbjct: 178 FGAQYAMRIWLD--ADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235 Query: 234 VSGQFTSEESLKAINLRINDRFFP--LTDVATISRGYEDPPTSLFRFNGQPAIGLAIGMK 291 +F + E + LR+N L DVA + G E+ + R NG+PA GL I + Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENY-NVIARINGKPAAGLGIKLA 294 Query: 292 AGANLLDFGEALKEEMTKVVADLPVGVGVHLVSDQPKIVEEAVGGFTKALYEAVIIVLAI 351 GAN LD +A+K ++ ++ P G+ V D V+ ++ K L+EA+++V + Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 352 SFVSLG-VRAGLVVAISIPLVLAITFLVMAYTGISLQRISLGALIIALGLLVDDAMIAVE 410 ++ L +RA L+ I++P+VL TF ++A G S+ +++ +++A+GLLVDDA++ VE Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 411 MMVARLEVGDSLKKAATYVYTS-TAFPMLTGTLVTVAGFIPIGLNNSAAGEFTFTLFVVI 469 + + K AT S ++ +V A FIP+ + G + I Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 470 AVSLIVSWIVAVLFTPLLGVTILPASLPSHHAEAGRLTRMFRAMLDACM----------- 518 ++ +S +VA++ TP L T+L HH G F D + Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 519 RHRWTTIIVTVLIFALSVFGMRFVQQQFFPSSDRNELVIDFNLPQNSSIAETNAQMARFE 578 +++ LI A V + F P D+ + LP ++ T + + Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 579 QEALKGD-PDIDHWSTYVGSGAQRFVLSFDVQPADVSFGQIIVVTKSLEAR--------- 628 LK + +++ T G F + G V K E R Sbjct: 595 DYYLKNEKANVESVFTVNG---------FSFSGQAQNAGMAFVSLKPWEERNGDENSAEA 645 Query: 629 --DRARAKL-QTYLTKTFPGTDAYVHLLDIGPPVGRPVQYRVSGPDVAKVREIAQQLAGV 685 RA+ +L + P + L + + +G + + QL G+ Sbjct: 646 VIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQ-AGLGHDALTQARNQLLGM 704 Query: 686 MRAN-SHLGAVIFDWMEPARVVKVDVLQDKARQLGVTSSDIANALNSVLDGSSITQVRDD 744 + + L +V + +E K++V Q+KA+ LGV+ SDI +++ L G+ + D Sbjct: 705 AAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDR 764 Query: 745 IYLIDVRGRAQAKERQSLETLRDLQLSGSNGQSIPLAALATLRYEIEQPEIWRRSRQPTL 804 + + +A AK R E + L + +NG+ +P +A T + P + R + P++ Sbjct: 765 GRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSM 824 Query: 805 TLKASVIDQVQPNTVVDQLKPAITAFNAKLPAGFKVVTGGAVEESAKSQAPIIAVVPIML 864 ++ P T + +KLPAG G + S A+V I Sbjct: 825 EIQGE----AAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISF 880 Query: 865 FTMATILMLQLQSFQRLFLVFAVAPLALIGVVAALLPSGAPLGFVAILGVLALIGILIRN 924 + L +S+ V V PL ++GV+ A ++G+L IG+ +N Sbjct: 881 VVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKN 940 Query: 925 SVILIVQIEHLRD-EGRPPWEAVMEATEHRMRPIMLTAAAASLALIPIA------REVFW 977 +++++ + L + EG+ EA + A R+RPI++T+ A L ++P+A Sbjct: 941 AILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQN 1000 Query: 978 GPMAYAMMGGIIVGTVLTLLFLPALYV 1004 + +MGG++ T+L + F+P +V Sbjct: 1001 -AVGIGVMGGMVSATLLAIFFVPVFFV 1026 Score = 97.2 bits (242), Expect = 1e-22 Identities = 83/515 (16%), Positives = 188/515 (36%), Gaps = 34/515 (6%) Query: 519 RHRWTTIIVTVLIFALSVFGMRFVQQQFFPSSDRNELVIDFNLPQNSSIAETNAQMARFE 578 R ++ +++ + + +P+ + + N P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQTVQDTVTQVI 65 Query: 579 QEALKGDPDIDH-WSTYVGSGAQRFVLSFDVQPADVSFGQIIVVTKSLEARDRARAKLQT 637 ++ + G ++ + ST +G+ L+F D Q+ V K A ++Q Sbjct: 66 EQNMNGIDNLMYMSSTSDSAGSVTITLTFQSG-TDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 638 YLTKTFPGTDAYVHLLDIGPPVGRPVQYRVSGPDVAKVREIAQQLAGVMRANSHLGAVIF 697 + +Y+ + Q +S + V++ +L GV G V Sbjct: 125 QGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGV-------GDVQL 177 Query: 698 DWMEPARVVKVDVLQDKARQLGVTSSDIANALNSVLDGSSITQVRDDIYLIDVRGRAQAK 757 + A + +D D + +T D+ N L D + Q+ L + A Sbjct: 178 FGAQYAMRIWLD--ADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235 Query: 758 ER---QSLETLRDLQLSGS-NGQSIPLAALATLRYEIEQPEIWRRSR-QPTLTLKASVID 812 + ++ E + L + +G + L +A + E + R +P L + Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLAT 295 Query: 813 QVQPNTVVDQLKPAITAFNAKLPAGFKVV----TGGAVEESAK--SQAPIIAVVPIMLFT 866 +K + P G KV+ T V+ S + A++ + L Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL-- 353 Query: 867 MATILMLQLQSFQRLFLVFAVAPLALIGVVAALLPSGAPLGFVAILGVLALIGILIRNSV 926 ++ L LQ+ + + P+ L+G A L G + + + G++ IG+L+ +++ Sbjct: 354 ---VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAI 410 Query: 927 ILIVQIE-HLRDEGRPPWEAVMEATEHRMRPIMLTAAAASLALIPIA-----REVFWGPM 980 +++ +E + ++ PP EA ++ ++ A S IP+A + Sbjct: 411 VVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQF 470 Query: 981 AYAMMGGIIVGTVLTLLFLPALYVAWFRIKTPENS 1015 + ++ + + ++ L+ PAL + + E+ Sbjct: 471 SITIVSAMALSVLVALILTPALCATLLKPVSAEHH 505
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.6 bits (77), Expect = 0.001 Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 18/181 (9%) Query: 95 LAVRASVADVSRSQAQLTNATGTEGRQRTLLETDATTKATLESAEQS--RAAAQASVIKA 152 L + + + + + L E ++ Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 153 QANLAKAREQLGYAQLKADFAGIVTAVSA-EVGQVVSPG---VSVVTVARPDIREAVIDV 208 LAK E+ + ++A + V + G VV+ + +V A++ Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQN 374 Query: 209 GDDLASGLQAGTPFTVRLQVDPSVSA---SGKVREIAPRADATTRTR-----RVRIALDN 260 D + G ++++ P GKV+ I DA R V I+++ Sbjct: 375 KD--IGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL--DAIEDQRLGLVFNVIISIEE 430 Query: 261 P 261 Sbjct: 431 N 431 Score = 32.1 bits (73), Expect = 0.003 Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 19/122 (15%) Query: 76 GDIVKKDQVVAAIDPAALELAVRASVADVSRSQAQLTNATGTEGRQRTL---LETDATTK 132 G+ V+K V+ + E AD ++Q+ L A + R + L +E + + Sbjct: 115 GESVRKGDVLLKLTALGAE-------ADTLKTQSSLLQARLEQTRYQILSRSIELNKLPE 167 Query: 133 ATLESAEQSRAAAQASVIKAQANLAKARE---------QLGYAQLKADFAGIVTAVSAEV 183 L + ++ V++ + + + +L + +A+ ++ ++ Sbjct: 168 LKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYE 227 Query: 184 GQ 185 Sbjct: 228 NL 229
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.3 bits (115), Expect = 2e-08 Identities = 24/145 (16%), Positives = 40/145 (27%), Gaps = 8/145 (5%) Query: 80 VSGRVTERLVEVGAHVTAGQVLARIDPAEQQADLDSAEAAVSAA--ESQVKVATSNFNRQ 137 + V E +V+ G V G VL ++ +AD ++++ A E S Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 138 QTLLSSGFTTRATFDQAQETLRTAEGSLEAAK---AQRDTAKDALTYTELRADADG---T 191 L F E SL + Q + L + RA+ Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 192 ITARNIEAGQVAQAAQPVFTLARDG 216 I + +L Sbjct: 223 INRYENLSRVEKSRLDDFSSLLHKQ 247 Score = 43.7 bits (103), Expect = 9e-07 Identities = 39/223 (17%), Positives = 78/223 (34%), Gaps = 25/223 (11%) Query: 99 QVLARIDPAEQQADLDSAEAAVSAAESQVKVATSNFNRQQTLLSSGFTTRATFDQAQETL 158 Q +A+ EQ+ A + +SQ++ S T+ ++ + L Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESE--ILSAKEEYQLVTQLFKNEILDKL 304 Query: 159 RTAEGSLEAAKAQRDTAKDALTYTELRADADGTITARNIEA-GQVAQAAQPVFTLARDGD 217 R ++ + ++ + +RA + + G V A+ + + + D Sbjct: 305 RQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDD 364 Query: 218 RDAVIDVYEAALSLKFDDTKVALALLSDPSVTA---------KGRVREVSP--TIDSKSG 266 V A + K D + + + V A G+V+ ++ D + G Sbjct: 365 TLEV----TALVQNK-DIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLG 419 Query: 267 TV-RVKIAIENPP-----PEMILGSAVSATGFIKPEQRIVLPW 303 V V I+IE + L S ++ T IK R V+ + Sbjct: 420 LVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISY 462
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.1 bits (153), Expect = 2e-14 Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 3/130 (2%) Query: 20 PRQARGRERREQLLDAAAALIAESGLAAVSMHAAAQRAGASIGSAYHFFRDKDQMLDALA 79 + +E R+ +LD A L ++ G+++ S+ A+ AG + G+ Y F+DK + + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 80 ERHDAELRSAFDRVLQRTDAEWAALSPAEIIEQLIGWAIRYFVRHPDALATLDLHDKAMH 139 E ++ + + + + EI+ ++ + R L + H Sbjct: 64 ELSESNIGELELEYQAKFPGDPLS-VLREILIHVLESTVTEERRR--LLMEIIFHKCEFV 120 Query: 140 GEFKAVIDRI 149 GE V Sbjct: 121 GEMAVVQQAQ 130
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 38.2 bits (89), Expect = 7e-05 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 22/100 (22%) Query: 7 DLIIRGGRVATTTDTFEADVAISGETIAAIGHG------------LGPAKREIDARGKYV 54 D +I + +AD+ + IAAIG +GP I GK V Sbjct: 69 DTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIV 128 Query: 55 LPGGVDSHCHI---EQLSAAGIVNADTFESATTSAAFGGT 91 GG+DSH H +Q+ A S T GGT Sbjct: 129 TAGGMDSHIHFICPQQIEEA-------LMSGLTCMLGGGT 161
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 94.8 bits (236), Expect = 2e-24 Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 9/190 (4%) Query: 1 MHVLIFGGAGFVGLNVAQGLLERGHAVTMFDA------APLPNAAQRAFADHGDRLHVIT 54 M L+ G AGF+G +V++ LLE GH V D L A A G Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPG--FQFHK 58 Query: 55 GDVTDERAVASAIAGGCDAVVMGAAITAGPERDAADPERILAVNLLAQVPILQTARSSGV 114 D+ D + A G V + +P NL + IL+ R + + Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 115 RRVINLSSAASYGASGQRFAVLEETMPCEPVSLYAITKFASERVASRLSDLWQTDVISVR 174 + ++ SS++ YG + ++ + PVSLYA TK A+E +A S L+ +R Sbjct: 119 QHLLYASSSSVYGLN-RKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177 Query: 175 LSAVFGPFER 184 V+GP+ R Sbjct: 178 FFTVYGPWGR 187
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 104 bits (260), Expect = 5e-29 Identities = 71/251 (28%), Positives = 116/251 (46%), Gaps = 4/251 (1%) Query: 3 LAGKVAVITGGGSGIGRASAVMFAREGAFLALVDRDAAGAEETRALMRDAGGDGSVHIGD 62 + GK+A ITG GIG A A A +GA +A VD + E+ + ++ D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 VGDADFAKTTIENVAAARGRVDVLMTAAGFSCGGTVVTTDPADWDAVFRANVGGTWLWAK 122 V D+ + G +D+L+ AG G + + +W+A F N G + ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 123 VAVPIMQVQKSGSIITVASQLAVAGGKGNSAYIAAKGAIISLTRTMAVDFATDGIRVNAL 182 M ++SGSI+TV S A +AY ++K A + T+ + ++ A IR N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 183 APGAIDTPLLRRSFARHADPEPV----REASRLRHAMKRFGEADEVAAAALFLASDEASF 238 +PG+ +T + +A E V E + +K+ + ++A A LFL S +A Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 239 TTGIVLPVDGG 249 T L VDGG Sbjct: 246 ITMHNLCVDGG 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 3e-25 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 1 MTK-RILAVDDSKTMRDMVSFTLKKAGFDVAEAEDGKAALNVLTGGKFDLIITDLNMPNM 59 MT IL DD +R +++ L +AG+DV + + G DL++TD+ MP+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 DGISLIKSVRAGSQHRTVPILILTTESDGAKKADGKAAGATGWLVKPFNPDQLIATVNR 118 + L+ ++ +P+L+++ ++ GA +L KPF+ +LI + R Sbjct: 61 NAFDLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF06580#Sensor histidine kinase Length = 349 Score = 39.8 bits (93), Expect = 2e-05 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 8/52 (15%) Query: 390 IRNALDHGIEPPAERLAAGKPRQGTINLSAAQRSGRIVIEVSDDGRGINRDK 441 + N + HGI P+ G I L + +G + +EV + G ++ Sbjct: 264 VENGIKHGIAQ--------LPQGGKILLKGTKDNGTVTLEVENTGSLALKNT 307
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 30.4 bits (68), Expect = 0.006 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 14/57 (24%) Query: 71 INAVTTNHTSF--------------FREAHHFDFLSRVIIPEFLSGNTTRLRIWSAG 113 +N V + HT F F + FDF + P F GN+T IW+ G Sbjct: 39 VNVVGSYHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYIDAPVFFGGNSTAKGIWNKG 95
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.9 bits (184), Expect = 6e-17 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 25/190 (13%) Query: 1 MSAIRVLIVDDSAFVRQMLTDLLSSDPGIEVLGAAPNPIVARDMIKSLNPDVLTLDIEMP 60 M+ +L+ DD A +R +L LS G +V + N I + + D++ D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALS-RAGYDVRITS-NAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 RMDGLAFLDKIMTLRP-MPVLMISSLTQKGADTAVRALEMGAFDCVAKPVIGLVEGLPAL 119 + L +I RP +PVL++S+ TA++A E GA+D + KP Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQN--TFMTAIKASEKGAYDYLPKPF---------- 106 Query: 120 RDEIVTKVKAAAAAKIRPRSGDEVRPLHRPGVSYSSSEKIIAVGASTGGVEALQELLMAF 179 ++ + A P+ VG S E + L Sbjct: 107 --DLTELIGIIGRALAEPKRRPSKLEDDSQDGMP-------LVGRSAAMQEIYRVLARLM 157 Query: 180 PSDAPAVVIT 189 +D ++IT Sbjct: 158 QTDLT-LMIT 166
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 81.5 bits (201), Expect = 2e-20 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 2/104 (1%) Query: 104 EIQFDYNSAAISKTSIQAVQELGKALSDPNLKGSTFMVAGHTDGIGSDGFNQDLSERRAD 163 ++ F++N A + A+ +L LS+ + K + +V G+TD IGSD +NQ LSERRA Sbjct: 220 DVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQ 279 Query: 164 TLKRYLVEKFGLAGQDLVTVGYGKTKLKDAANPADPVNRRVQVV 207 ++ YL+ K G+ + G G++ N D V +R ++ Sbjct: 280 SVVDYLISK-GIPADKISARGMGESNPV-TGNTCDNVKQRAALI 321
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 59.6 bits (144), Expect = 2e-13 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 2/158 (1%) Query: 5 LSRALVVFSERGYHAASLAELRAAMKLATGSLYKAFEDKRAIFVATLDYYIARRDRQLRE 64 L AL +FS++G + SL E+ A + G++Y F+DK +F + + E Sbjct: 17 LDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELE 76 Query: 65 RL-DAEQSGRDKLRALLQFYAESASDSEGRRGCLVVTSAAELASLDAEIAVKVRAAL-RR 122 LR +L ES E RR + + + + + + L Sbjct: 77 YQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLE 136 Query: 123 VETALCDLVRLGQADGSIRTGRDPDAVAGALFCLIQGL 160 + ++ + A + I GL Sbjct: 137 SYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 4e-04 Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 3/91 (3%) Query: 77 GKVAKRLVEVGQTVEIGQPLATLDEVDLKLQAEQAEAEFRAA--TGVLAQASAAETRAKE 134 V + +V+ G++V G L L + + + ++ A Q + + Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 135 LRVKGWTTDAQMDQAKASADEARARLNRAER 165 L + + R E+ Sbjct: 165 LPELKLPDEPYFQNVSE-EEVLRLTSLIKEQ 194
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 473 bits (1220), Expect = e-152 Identities = 238/1053 (22%), Positives = 434/1053 (41%), Gaps = 66/1053 (6%) Query: 6 LSAWAVSHPPLVLFLIVALGLFGFISYERLGRAEDPSFTVKVVNVSMIWPGATATEMQSQ 65 ++ + + P L + L + G ++ +L A+ P+ V+VS +PGA A +Q Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 66 VADPIEKKLQELPYFEKVETYSKPAFAAM-QITFRDSTPPKEVPYLFYLVRRKLADVQAS 124 V IE+ + + + + S A + +TF+ T P V+ KL Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIA---QVQVQNKLQLATPL 117 Query: 125 LPSGVLGPFVNDEFSDVDSILFMM-TGDGADYAQLKK---VAEGLRQRLLKVDGVTKVNL 180 LP V ++ E S ++ D Q VA ++ L +++GV V L Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 181 YGTQDE-RIYVEFSHAKLATLGITPQALFDSLAKQNNVTPAGTVETS------SQRVPLR 233 +G Q RI+++ L +TP + + L QN+ AG + + + Sbjct: 178 FGAQYAMRIWLDA--DLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235 Query: 234 VTGALDGAKAVAETPVESN--GRVFRLGDIATVTHGFVDPPTYKVHQEGKPALGLGIVTA 291 + + + N G V RL D+A V G + GKPA GLGI A Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENY-NVIARINGKPAAGLGIKLA 294 Query: 292 KGANILELGKDVHAASDDFMKAVPQGIELKQIADQPKVVETAVGEFVHSFVEALVIVLFV 351 GAN L+ K + A + PQG+++ D V+ ++ E V + EA+++V V Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 352 SFLALG-WRTGIVVALSVPLVLGIVFIVMSAMGLDLHRISLGALIIALGLLVDDAIIAVE 410 +L L R ++ ++VP+VL F +++A G ++ +++ +++A+GLLVDDAI+ VE Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 411 MMV-VKMEQGWDRVRAASFAWESTAFPMLTGTLVTAAGFLPIGFASSAVGEYTGTIFWIV 469 + V ME A + ++ +V +A F+P+ F + G + Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 470 AISLVASWFVAVIFTPYIGVKLLPDMKAHHGHDENA-------VYDTRMYRGLRAVVSWC 522 ++ S VA+I TP + LL + A H ++ +D V Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFD-HSVNHYTNSVGKI 533 Query: 523 VAHRITTVAATVGVFVASIVAFGHVQQQFFPLSERPELFLQLRLPEGTAFNVTEKAARK- 581 + + + +V F + F P ++ ++LP G T+K + Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593 Query: 582 AEGFLKDDKD-IETFTSYVGQGSPRFWLGLNPQLPNEAFAEIVIVAKDVAARERIKARIE 640 + +LK++K +E+ + G + Q N A + + + + A Sbjct: 594 TDYYLKNEKANVESVFTVNG-------FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 641 AAAAN---GEINEARVRVDRFNFGPP--------VGFPVQFRVI-GPDTAKVREIAYQVR 688 A G+I + V F P GF + G + + Q+ Sbjct: 647 IHRAKMELGKIRDGFV----IPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLL 702 Query: 689 DVMRQN-ANVRDPQFDWNEQSPYLKLVVDQDRARAIGLTPQDVSQSLAMLISGVQVTTIR 747 + Q+ A++ + + E + KL VDQ++A+A+G++ D++Q+++ + G V Sbjct: 703 GMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFI 762 Query: 748 DGIEKVGVIARAVPSERLDLAGVGDLTITSRNGVAVPLQQIAKIEYSHEEPILRRRNRDM 807 D + +A R+ V L + S NG VP + + P L R N Sbjct: 763 DRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLP 822 Query: 808 AITVRSDVADGVQAPDVTNQIWPKLADIRSHLDPAYRIEMGGAIEESAKGNASIFVLFPL 867 ++ ++ + A G + D + ++ S L + G + L + Sbjct: 823 SMEIQGEAAPGTSSGDAMALM----ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAI 878 Query: 868 MVIVMLTLLMIQLQSFSRLVLVFLTAPLGIIGASFGLNVANAPFGFVALLGLIALAGMIM 927 +V+ L +S+S V V L PLGI+G + N ++GL+ G+ Sbjct: 879 SFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSA 938 Query: 928 RNTVILVDQI-ETDVASGLTRREAIIEATVRRARPVVLTALAAILAMIPLSRSAFWG--- 983 +N +++V+ + G EA + A R RP+++T+LA IL ++PL+ S G Sbjct: 939 KNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGA 998 Query: 984 --PMAITIMGGLFVATFLTLLYLPGLYALWFRK 1014 + I +MGG+ AT L + ++P + + R Sbjct: 999 QNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.7 bits (152), Expect = 2e-14 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Query: 12 DTRERILVVAERLFRQIGYQKTTVADIAKELRMSPANVYRFFDSKKAIHEAVARTLMGQV 71 +TR+ IL VA RLF Q G T++ +IAK ++ +Y F K + + + Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI 70 Query: 72 -EAAALVIADRPGPAAPRLREMLGTIHR 98 E A PG LRE+L + Sbjct: 71 GELELEYQAKFPGDPLSVLREILIHVLE 98
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 27.4 bits (60), Expect = 0.046 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Query: 32 GWISSRDPDGHVNLAPYSFFNAFNYTPPI---IGFSSTNMKDSAANIRDTGEFVWNLVTR 88 G + + D HVN P + + + + + I F T KD I+ + W+ Sbjct: 760 GMNTDTNTDVHVNKEPKAVIKS-DSSVIVEEEINFDGTESKDEDGEIK---AYEWDFGDG 815 Query: 89 DLATQMNAT 97 + + + AT Sbjct: 816 EKSNEAKAT 824
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 312 bits (800), Expect = 3e-97 Identities = 119/486 (24%), Positives = 187/486 (38%), Gaps = 97/486 (19%) Query: 521 EATKLQADGRKVILVRIETSPEDIHGMHA--AEGILTTRGGMTSHAAVVARGMGKPCVSG 578 E L + +++ + +P D ++ +G T GG TSH+A+++R + P V G Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 579 CGTIRVDYGRGTMSIGGRTFKTGDVITIDGSVGQVLAGRMPMI----EPELSGEFGTLMG 634 + + GD++ +DG G V+ E + + Sbjct: 206 TKEVTEK------------IQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQE 253 Query: 635 WADAV---------RETGVRVNADTPEDARTAIKFGAEGIGLCRTEHMFFEETRIRTVRE 685 WA V + N TP+D + G EGIGL RTE ++ + ++ Sbjct: 254 WAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQL----- 308 Query: 686 MILSEEEQERRAALAKLLPMQRADFVELFEIMKGLPVTIRLLDPPLHEFLPHTQAEVEEV 745 +EEEQ + E+ + M G PV IR LD + L + Q E Sbjct: 309 --PTEEEQ-------------FEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKEL- 352 Query: 746 ARAMNTDPRRLADRARELSEFNPMLGFRGCRLAIAYPEIAEMQARAIFEAAVEAEKRTGE 805 NP LGFR RL + +I Q RA+ A+ Sbjct: 353 ---------------------NPFLGFRAIRLCLEKQDIFRTQLRALLRASTYGN----- 386 Query: 806 AVGLEVMVPLIATKAEFDLVKARIDAMAQAVIRETGAKLE-YQVGTMIELPRAALMAGQI 864 L+VM P+IAT E KA + ++ E + +VG M+E+P A+ A Sbjct: 387 ---LKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLF 443 Query: 865 AEAAEFFSFGTNDLTQTTYGISRDDA-GSFLGAYVAKGILEIDPFISIDRDGVGELVKIG 923 A+ +FFS GTNDL Q T R + S+L P+ V ++K Sbjct: 444 AKEVDFFSIGTNDLIQYTMAADRMNERVSYL----------YQPYHPAILRLVDMVIKAA 493 Query: 924 VERGRATRPNLKVGICGEHGGDPASVAFCHKIGMNYVSCSPYRVPIARLAAAQSALG--K 981 G+ VG+CGE GD ++ +G++ S S + AR + + K Sbjct: 494 HSEGK------WVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKEELK 547 Query: 982 EIASQA 987 A +A Sbjct: 548 PFAQKA 553
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.0 bits (85), Expect = 2e-04 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 10/129 (7%) Query: 104 QVPPRYQASDFPKVDRTLKGDRLVVRPPSQPQPSSVPTEAAEPAPAPPEPAPAMSPAPTD 163 Q P+ + PK ++ V+P ++P + PT + + + Sbjct: 1120 QEVPKVTSQVSPKQEQ-----SETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 164 SNSSVFGAKTTEAPVAPLPAPRAALDPELQEALSAPPLAQYESA-KPEIQPSAELK--PA 220 ++S+V T V + +PE + P ES+ KP+ + ++ P Sbjct: 1175 TSSNVEQPVTESTTVNTGNSV--VENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPH 1232 Query: 221 TDAAAVDSA 229 A S+ Sbjct: 1233 NVEPATTSS 1241
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 43.7 bits (103), Expect = 8e-07 Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 2/143 (1%) Query: 67 LLWGLGQPLAGAIADRFGVMRVICVGALLYAGGLLMMRYSTSPLSLNIGAGVLVGFGLSG 126 L + +G + G ++D+ G+ R++ G ++ G ++ S SL I A + G G + Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG-AA 118 Query: 127 CSFNLILSAFSKLLPPERRGVALGAGTAAGSLGQFLFAPFGVALIDQFGWQSALMVFATL 186 L++ ++ +P E RG A G + ++G+ + G + W S L++ + Sbjct: 119 AFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW-SYLLLIPMI 177 Query: 187 MLFIVPLSLAVATPPAAEAKPTD 209 + VP + + D Sbjct: 178 TIITVPFLMKLLKKEVRIKGHFD 200
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 31.7 bits (72), Expect = 0.004 Identities = 10/27 (37%), Positives = 16/27 (59%) Query: 153 VVVTGAAGGVGSVATAVLAKLGYHVIA 179 +VTGAAG +G + L + G+ V+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVG 29
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.7 bits (69), Expect = 0.009 Identities = 19/114 (16%), Positives = 32/114 (28%) Query: 157 PMWSRAAAGLGALLVAAAGSWFMLAREPIPAPPAQPQAGEASVPSSGPASTDPAVRSVTM 216 A + +VA A A +P P P +P+ +P + + Sbjct: 41 IELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 100 Query: 217 EAVSAATAPASAPADPPSEALAIAGPAPQVAAAVALAADLTAQAASTTPTPSPE 270 + + +P A A TA AA++ P S Sbjct: 101 PKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVA 154
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 260 bits (665), Expect = 1e-78 Identities = 170/669 (25%), Positives = 286/669 (42%), Gaps = 92/669 (13%) Query: 111 AIGNGFELNFENSPIATVAKVVLGDVLGVGYTIDPRIQGTVSLSSVRPVPKSDVVYVLEN 170 A F +F+ + I V + L IDP ++GT+++ S + + + Sbjct: 25 AAAEEFSASFKGTDIQEFINTVSKN-LNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLS 83 Query: 171 ALRLAGTALV-RDNSGYRLIPLGEAVGAGNVDAPGAAAEPGYGIT--VLPLQYVSAPTLL 227 L + G A++ +N +++ +A A A AA G + V+PL V+A L Sbjct: 84 VLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLA 143 Query: 228 KLLDSF--ALKPGTVRADPGRNMLLIQGTGSERRTAVDAALSF--DADWMKGQSVGIFPI 283 LL G+V N+LL+ G R + L+ D +SV P+ Sbjct: 144 PLLRQLNDNAGVGSVVHYEPSNVLLMTG----RAAVIKRLLTIVERVDNAGDRSVVTVPL 199 Query: 284 ANGNPEPIVAELEKI--MDTGDSGLGQNMVKFQTISRMNAVMVISRKPALLRTAETWIKR 341 + + +V + ++ + + G + R NAV+V + R IK+ Sbjct: 200 SWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAM-IKQ 258 Query: 342 LDAGNTLRNSVHVYRVKYGEARQMARVLNEMFTGNSASADASSTDLAPGSGAASSSSSER 401 LD + + V +KY +A + VL + S+ + AA ++ Sbjct: 259 LDRQQATQGNTKVIYLKYAKASDLVEVLTGI-----------SSTMQSEKQAAKPVAALD 307 Query: 402 LSAAGTASTGSLSGQQPGNNGLVANRGFGGAPPATQTSLDSAPESRASAGGSKPLMDGVR 461 + A N L+ V Sbjct: 308 KNIIIKA--------HGQTNALI-----------------------------------VT 324 Query: 462 ITPDVVNNTLLIYADRENYRIIEATLRQCDRPQLQVAIDATIAEVTLNDNLNYGVQAYLT 521 PDV+N+ +E + Q D + QV ++A IAEV D LN G+Q Sbjct: 325 AAPDVMND-------------LERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWA-- 369 Query: 522 SKNLGLRPDQGSLLNTTSTSAPATVASAAGTITNAFLNRAFPGFNFLIGSESQPS--AIL 579 +KN G+ S L ++ A A + GT++++ + A FN + Q + +L Sbjct: 370 NKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLAS-ALSSFNGIAAGFYQGNWAMLL 428 Query: 580 SALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVVNTIDYRNTGI 639 +AL + T +L+ PS+V +DN AT VG +VPV TGS T T+ + + NT++ + GI Sbjct: 429 TALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQT--TSGDNIFNTVERKTVGI 486 Query: 640 ILRVAPRVNENGNVRLEIEQEISNV---SPQTANSLTPTVAQRKVKSAVAVASGQTVLLA 696 L+V P++NE +V LEIEQE+S+V + T++ L T R V +AV V SG+TV++ Sbjct: 487 KLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVG 546 Query: 697 GLISETHQGTRNGVPGVDQIPVLGDLFSNNDRTRGRTELIIFIRPQIIRDGTDAHYVAEE 756 GL+ ++ T + VP + IPV+G LF + + + L++FIRP +IRD + + Sbjct: 547 GLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSG 606 Query: 757 LRSKLRGTI 765 + Sbjct: 607 QYTAFNDAQ 615
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 204 bits (521), Expect = 3e-64 Identities = 100/389 (25%), Positives = 176/389 (45%), Gaps = 3/389 (0%) Query: 3 GTISAATAKDVIDRIEYLRLLPIETVEEKTASPVTRDMLAWFGGP---TQADVTTFTRDL 59 GT A +A+ + L+P+ E + + + +D+ TR L Sbjct: 18 GTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKIRLSTSDLALLTRQL 77 Query: 60 ALLLKAGARLEDSLELLAGDADIGRLRPIVNRLRSSILAGESLADALAHHPLQFPAMYLA 119 A L+ A LE++L+ +A ++ L ++ +RS ++ G SLADA+ P F +Y A Sbjct: 78 ATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFPGSFERLYCA 137 Query: 120 LVRVGEASGSLDHVLEVLGAERARADAMRRKLSDAMQYPLFVLAAAALVMLFFFLVVLPQ 179 +V GE SG LD VL L + MR ++ AM YP + A V+ VV+P+ Sbjct: 138 MVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVAIAVVSILLSVVVPK 197 Query: 180 FSAVLRDFGAKTDTTITTFLDISDFVRGHGAALASAAAAIVAAGGLLFGRAGVRAALIAQ 239 + + +SD VR G + A A A ++ + R + + Sbjct: 198 VVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRVMLRQEKRRVSFHRR 257 Query: 240 LCRLPGLAKVFGSYRTSVFCRNLAILLGSGLTLTATLRILVDIMSAIGNGAEWGAAADRV 299 L LP + ++ T+ + R L+IL S + L +RI D+MS A D V Sbjct: 258 LLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMSNDYARHRLSLATDAV 317 Query: 300 RHGGKLSEALAATSILPAMATRMIRIGEETGQVPVLAGRIAEFYEAKLQRSLDRIVGIVG 359 R G L +AL T++ P M MI GE +G++ + R A+ + + + +G+ Sbjct: 318 REGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQDREFSSQMTLALGLFE 377 Query: 360 PAAIILISTVVGGLIVSVMSALLSVTQLV 388 P ++ ++ VV ++++++ +L + L+ Sbjct: 378 PLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 133 bits (336), Expect = 8e-43 Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 7/139 (5%) Query: 21 RHEDQRGFTLVEMLVVIAIIGMIMGLIGPRVLSSLNESRVKTARIQIQSFSSALDLFYLD 80 + QRGFTL+E++VVI IIG++ L+ P ++ + ++ + A I + +ALD++ LD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 81 TGRYPTTSEGLAALVRPVATIPG---WAGPYLKGGNVPSDPWSHAYVYRSPGQQVPYEIL 137 YPTT++GL +LV P + +P+DPW + YV +PG+ Y++L Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYI-KRLPADPWGNDYVLVNPGEHGAYDLL 121 Query: 138 SYGADGQEGGTDLAADISS 156 S G DG+ G D DI++ Sbjct: 122 SAGPDGEMGTED---DITN 137
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 30.6 bits (69), Expect = 0.003 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Query: 4 RADHPQAGFTLIEALAAMALMGLLVSALAAIASHWLPNWNRGLNRIQRSESVSV--ALD 60 RA Q GFTL+E + + ++G+L + + + + N + + S+ V++ ALD Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVL---ASLVVPNLMGNKEKADKQKAVSDIVALENALD 57
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 754 bits (1948), Expect = 0.0 Identities = 315/1029 (30%), Positives = 522/1029 (50%), Gaps = 31/1029 (3%) Query: 5 DIFIRRPVLALVVSALILVLGLRSMTTLSILQYPRTQNAIVTVSTAYAGADSDIIAGFIT 64 + FIRRP+ A V++ ++++ G ++ L + QYP V+VS Y GAD+ + +T Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 TPLENAIAQANGIDYMTSTSV-TGSSTITVNLRLNYDSGKAMTEINAKVNSVLNQLPTGT 123 +E + + + YM+STS GS TIT+ + D A ++ K+ LP Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 QQPTLTLKVGQTIDAMYIGFASDVLAPNQ--ITDYLTRVVQPKLQAVSGVQTAELIGAKK 181 QQ ++++ + M GF SD Q I+DY+ V+ L ++GV +L GA+ Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182 Query: 182 FALRAWLDPDKLAAYGLTATDVSTALSGND------YISGLGTTKGRLVQVDLAAATNLH 235 A+R WLD D L Y LT DV L + + G G+ + + A T Sbjct: 183 -AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 SLEQYRNLVVK-QVNGAIIRLRDVASVTLGNDDYDTATRFNGKTAVYIGIQVAPTANLLD 294 + E++ + ++ +G+++RL+DVA V LG ++Y+ R NGK A +GI++A AN LD Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 VINGVKAVFPDLQQQLPNGIRSEIIYDSTDFVNSSIDEVEHTLVEAIGIVIVVVFMFLGS 354 +KA +LQ P G++ YD+T FV SI EV TL EAI +V +V+++FL + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 WRSVLIPVIAIPLSLIGTFGLMLLMGFSINLLTLLALVLAIGLVVDDAIIVVEAVHR-LI 413 R+ LIP IA+P+ L+GTF ++ G+SIN LT+ +VLAIGL+VDDAI+VVE V R ++ Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 414 DEGVSPVEAAIQSARALASPIIAMTVVLIAVYVPVGFQGGLTGALFTEFAFTLAGAVTVS 473 ++ + P EA +S + ++ + +VL AV++P+ F GG TGA++ +F+ T+ A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 AVIALTLSPMNCAWLLRRTERGSTTLEARLVRAIDHVLERLAHAYRRCLESVFSTKPVVV 533 ++AL L+P CA LL+ + + + + Y + + + + Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 534 VFAFLLLAMIPWLYVSSTSELAPDEDQGVVLTLTNSAPSATLEQRQFYAQQLHD--LIAD 591 + L++A + L++ S P+EDQGV LT+ AT E+ Q Q+ D L + Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 592 RPETRTVFQI-------DASTQVIGGWVLKPWDQRKATTKTLQPEFQQMLNGIAGARSVA 644 + +VF + A + LKPW++R + + + + R Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 645 FQPSPLPGSNGLPIQ--FVIGSTGTFNQLNDVSRDLMNKALA-----SGKFIFLDSDLKI 697 P +P L F +D N+ L + + + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 698 DKPQTTVVFDRDKAADLGLKMSDLGGALATMLGGNYLDYFSLEGRSYKVIPQVRQNDRLT 757 D Q + D++KA LG+ +SD+ ++T LGG Y++ F GR K+ Q R+ Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 758 DAQLLDYSIRAGSSTMVPLATVAHLEHKTIPESLNHFQQINAATISGVAMPGVSMGDALA 817 + +R+ + MVP + L + + + I G A PG S GDA+A Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 818 TLKELGKSLPSGYSIDYGGASRQLEQESGGFVTTFVFALIIIFLALAALFNSFVDPIIIL 877 ++ L LP+G D+ G S Q + +++FL LAAL+ S+ P+ ++ Sbjct: 842 LMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVM 901 Query: 878 VSVPMSLAGALIFISLGIGGASINIYTQVGLVTLMGLVSKHGILMVEVANELRE-QGKDR 936 + VP+ + G L+ + ++Y VGL+T +GL +K+ IL+VE A +L E +GK Sbjct: 902 LVVPLGIVGVLLA--ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 937 TEAIIEAATIRLRPILMTTAAMVLGVIPLITASGAGAVSRFNMGLVIATGLSIGTLFTLF 996 EA + A +RLRPILMT+ A +LGV+PL ++GAG+ ++ +G+ + G+ TL +F Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 997 VVPVAYALI 1005 VPV + +I Sbjct: 1020 FVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.4 bits (110), Expect = 1e-07 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 19/144 (13%) Query: 152 ALVTQQKAIVEQK----TLKAPFAGR-LGIRAVDLGQYLGAGTTIVTL-QSLDPIFVDFY 205 L+T + A E++ ++AP + + ++ G + T++ + D + V Sbjct: 312 GLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTAL 371 Query: 206 LPQQSLAEIRIGQDVGVAVDAFPGERF---TGQISAINAK--VDSTSRNV------QVRA 254 + + + I +GQ+ + V+AFP R+ G++ IN D V Sbjct: 372 VQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEEN 431 Query: 255 TL--RNNQARLLPGMFAKVEIATG 276 L N L GM EI TG Sbjct: 432 CLSTGNKNIPLSSGMAVTAEIKTG 455 Score = 42.5 bits (100), Expect = 2e-06 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 3/92 (3%) Query: 75 QVAGIVQSIQFNSGDSVEAGQPLLQLVATDDVAKLQSLQATAENYAIVVKRDE---EQIK 131 IV+ I G+SV G LL+L A A Q++ + R + I+ Sbjct: 102 IENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIE 161 Query: 132 FNAVSQATLDSDRANLKNAQALVTQQKAIVEQ 163 N + + L + ++ V + +++++ Sbjct: 162 LNKLPELKLPDEPYFQNVSEEEVLRLTSLIKE 193
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.6 bits (121), Expect = 1e-08 Identities = 20/101 (19%), Positives = 37/101 (36%) Query: 175 RQVEALQAQADYQAFRMEATYLSLTANVVTAAITDASLRDQIAATEEIIKAETDQLERIQ 234 +V L + Q + N+ ++ +I E + + E +L+ Sbjct: 182 EEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFS 241 Query: 235 RQFDVGAISKSDVLSQEATLAQAKATLAPLQKQLAQQRNQL 275 AI+K VL QE +A L + QL Q +++ Sbjct: 242 SLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI 282
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 74.7 bits (183), Expect = 3e-18 Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 12/193 (6%) Query: 33 AGRTERKHTQILESARTLFLESGFDTTSVDAIARHAGVSKATLYAHFTDKDALLLALVEE 92 + IL+ A LF + G +TS+ IA+ AGV++ +Y HF DK L + E Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 93 DCERRRDPLWMPHDRTIDLERDLRE-IGQRFLSIFLDDQALAMHRLIMSCAARY-PAIAE 150 + + + D + + + + RL+M + E Sbjct: 66 SESNIGE---LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 151 AFMRAGPDRCDAE-----VAAFLRAAKAEGLIDVP-NVRLAATQFLMLIQGRLPLTWALS 204 + R + L+ ++ R AA I G L W + Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISG-LMENWLFA 181 Query: 205 LQAPSAAESRAQL 217 Q+ + Sbjct: 182 PQSFDLKKEARDY 194
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.1 bits (112), Expect = 7e-08 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 9/139 (6%) Query: 303 LTSPSVGAVAQQYGRRPLLMLGFSALAIRGALFAVVHDPYILVAVQIFDGMTAAVFAVMI 362 +P +GA++ ++GRRP+L++ + A+ A+ A ++L +I G+T A AV Sbjct: 58 ACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAV-A 116 Query: 363 PLTVADVAFGSG---HFNLAQGIVGTATGIGASLSTVVAGFVSDRFGSATAFLGLSGVAL 419 +AD+ G HF G + G G V+ G + F F + + Sbjct: 117 GAYIADITDGDERARHF----GFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNG 171 Query: 420 TGLVLIALLMPETGQHARR 438 + L+PE+ + RR Sbjct: 172 LNFLTGCFLLPESHKGERR 190 Score = 29.4 bits (66), Expect = 0.027 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 11/146 (7%) Query: 50 FIFFLADVQTGFGPFIAVYLTTQK--WTQAQIGLVLSIGGIVGLIGQMPGGAIIDAAKSE 107 +FF+ + + V + W IG+ L+ GI+ + Q + A E Sbjct: 217 AVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE 276 Query: 108 RRV--AGLAVAAIGCCALAYAV--WPIFPVVAGAATLHAAASCVLGPAIAAISLGLVGPR 163 RR G+ G LA+A W FP++ + A+ + PA+ A+ V Sbjct: 277 RRALMLGMIADGTGYILLAFATRGWMAFPIM-----VLLASGGIGMPALQAMLSRQVDEE 331 Query: 164 GMAERLGRNARFASLGNGVAAAIMGT 189 + G A SL + V + Sbjct: 332 RQGQLQGSLAALTSLTSIVGPLLFTA 357
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.4 bits (214), Expect = 5e-23 Identities = 35/128 (27%), Positives = 55/128 (42%) Query: 5 TKPKVYVADDDADVLGSLRFLLEADGFDVRTFRSGIALLNASDHAPVDCFVVDYKMPELN 64 T + VADDDA + L L G+DVR + L D V D MP+ N Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 65 GVELAERLRKQGATAPVVLITGHYDDRLEARAAAVGIQDFLLKPLLDDNLVKRIRKAIAN 124 +L R++K PV++++ +A+ G D+L KP L+ I +A+A Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 125 EHSTTAQR 132 ++ Sbjct: 122 PKRRPSKL 129
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 126 bits (319), Expect = 2e-36 Identities = 41/149 (27%), Positives = 71/149 (47%) Query: 4 RAKVYVIDDDEAMRDSLNFLLDSSGFEVVLFEHAQSFLEHLPSLSFGCVVSDVRMPGIDG 63 A + V DDD A+R LN L +G++V + +A + + + VV+DV MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 64 IELLKRMKAAGSSFPILVMTGHGDVPLAVEAMKLGAVDFLEKPFEDERLVAMIETAIRQA 123 +LL R+K A P+LVM+ A++A + GA D+L KPF+ L+ +I A+ + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 124 EPAAKNESITQDILGRIASLSPRERQVMD 152 + + S +++ Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYR 151
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 30.5 bits (68), Expect = 0.014 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 17/131 (12%) Query: 247 HDLTEHQQTQARLRELQSELVHVSRLSAMGEMASALAHELNQ-PLAAISNYMKGS-RRLL 304 H + + Q + + + EM++ALA N+ S+ + S R+L Sbjct: 27 HTDAQQAEIQQAAEDSSPGAEVQKFVQSTDEMSAALAQFRNRRDYEKKSSNLSNSFERVL 86 Query: 305 AGSSDPNTGKI-----------ESAMDRAAEQAIRAGQIIRRLRDFVSRGESE----KRV 349 + P +I E + +A ++ LR+ + R + E K++ Sbjct: 87 EDEALPKAKQILKLISVHGGALEDFLRQARSLFPDPSDLVLVLRELLRRKDLEEIVRKKL 146 Query: 350 ESLSKLIEEAG 360 ESL K +EE Sbjct: 147 ESLLKHVEEQT 157
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 46.7 bits (111), Expect = 5e-08 Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 19/121 (15%) Query: 3 GATGTIGRATVRALVARGHEVVCF----------IRPHR-DVVEVPGAALRIGDVTDPVS 51 GA G IG + L+ GH+VV ++ R +++ PG D+ D Sbjct: 7 GAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD-RE 65 Query: 52 LARDGFRGEPFDAVVSCMASRTGV---PGDAQAIDDQ---AHVNVLDAACRAGITHFVLL 105 D F F+ V R V + A D +N+L+ I H + Sbjct: 66 GMTDLFASGHFERVFI-SPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLLYA 124 Query: 106 S 106 S Sbjct: 125 S 125
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.6 bits (149), Expect = 1e-13 Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 8/149 (5%) Query: 8 SDLRRQLILGAAKRCFARHGYVGTTTKSVAAAAAISEALLFKHFSSKAALYAEILAEECE 67 + RQ IL A R F++ G T+ +A AA ++ ++ HF K+ L++EI Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 68 ADPDFELLLGQEPSTVTLVKLMAGMVRHFLSTADGANEEEEQRLRLMITSHLDDGEFARL 127 + EL + L L ++ + EE +RL + I H + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVL----ESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 128 LYTKIDDLIG----AKFVDSLDSAVASGD 152 + + + + +L + + Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKM 153
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 64.9 bits (158), Expect = 1e-13 Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 17/180 (9%) Query: 129 QGDLANFKAQVTVAQLSLDRAKQLASRQFGPQATVDQAQAAYDQAQAGIAKTEALIAQKL 188 + L ++++ A+ QL + + Q +AK E + Sbjct: 272 KSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR--QTTDNIGLLTLELAKNEERQQASV 329 Query: 189 VRAPFDGDLGVRKV-EVGQYLSAGTQIVSLT-DLSELWVNFTVTEKDSGQLKVGQTVRVG 246 +RAP + KV G ++ ++ + + L V V KD G + VGQ + Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 247 VDAYPGK---VFEGKITTIEPQIATD---------TRNIRVQATIANPDHI-LKPGMFAT 293 V+A+P GK+ I D +I +I L GM T Sbjct: 390 VEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVT 449 Score = 37.1 bits (86), Expect = 9e-05 Identities = 26/181 (14%), Positives = 63/181 (34%), Gaps = 33/181 (18%) Query: 14 IDDKPRKRTRPVLWFTIVAILLAALVGGFVWFNMFRDKMIAQFFANMKPPPINVSMATAT 73 I+ +R R V +F ++ LV F+ + +ATA Sbjct: 49 IETPVSRRPRLVAYF-----IMGFLVIAFILS----------VLG-----QVE-IVATAN 87 Query: 74 AEVVPNLLTAVGDLAAVHQVNVTSDASGRITDIMFTPGTTVKQGTPLVQLYDAPEQGDLA 133 ++ + + + + +I+ G +V++G L++L + D Sbjct: 88 GKLTH----------SGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTL 137 Query: 134 NFKAQVTVAQLSLDRAKQLASRQFGPQATVDQAQAAYDQAQAGIAKTEALIAQKLVRAPF 193 K Q ++ Q L++ + + + + + + +++ E L L++ F Sbjct: 138 --KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQF 195 Query: 194 D 194 Sbjct: 196 S 196
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 811 bits (2096), Expect = 0.0 Identities = 315/1029 (30%), Positives = 535/1029 (51%), Gaps = 30/1029 (2%) Query: 5 DIFIKRPVLSLVVSMLILLLGLRAAFELPIRQYPKLSNTVVNVTTVYPGASADLIQGFIT 64 + FI+RP+ + V+++++++ G A +LP+ QYP ++ V+V+ YPGA A +Q +T Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 TPLEQAVASAEGVDYITSSSVQ-GTSTIQVFIKLNFDPNQALTEVLAKVNSVRYLIPRES 123 +EQ + + + Y++S+S G+ TI + + DP+ A +V K+ L+P+E Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 NDPIVTKSTGQTTSVMYLGFSSE--ELSGSAISDYLTRVVQPVLSTVDGVAAANILGGQT 181 ++ ++ +M GF S+ + ISDY+ V+ LS ++GV + G Q Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ- 181 Query: 182 FAMRIWLNPEKMAGRNVSPADVAAAISANNFQSAAGQAKGYFIVS------NVTTNTGLT 235 +AMRIWL+ + + ++P DV + N Q AAGQ G + ++ T Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 DVNQFKRMIVKA-KDGGFVRMEDIATVELAAQSTDASVAFNGERAIFIGVDATPQGNPLN 294 + +F ++ ++ DG VR++D+A VEL ++ + NG+ A +G+ N L+ Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 IVKGVRALFPDLERNLPPSMKMKVAYDSTKFIQSSIDEVEHTLGEAVLIVIVVIFLFLAS 354 K ++A +L+ P MK+ YD+T F+Q SI EV TL EA+++V +V++LFL + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 LRSVIIPVVTIPLSLIGVCTMMLALGFSINLLTLLAMVLAIGLVVDDAIVVVENIHRHL- 413 +R+ +IP + +P+ L+G ++ A G+SIN LT+ MVLAIGL+VDDAIVVVEN+ R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 414 EEGRAPVQAALQGAREIVGPVISMTITLAAVYAPIGFLGGLTGSLFREFAFTLAGSVIVS 473 E+ P +A + +I G ++ + + L+AV+ P+ F GG TG+++R+F+ T+ ++ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 GVIALTLSPMMCSVLLR------SAEEGRFARIVNRVFGAMTRWYGRQLDRSLDYRPVTA 527 ++AL L+P +C+ LL+ +G F N F Y + + L Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 528 LFAVTILGLVGFLYMHTSKELAPEEDQGIVFSITKAPKYANIDYINFYTDKLDKVFQKFP 587 L I+ + L++ PEEDQG+ ++ + P A + D++ + K Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 588 ETDLRFVLN------GINGPQGGFAGMLLKPWDERTR---SSIKLKPLVQAELSKIEGIN 638 + ++ V G A + LKPW+ER S+ + + EL KI Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 639 AFAFNLPA--LPGGPGGLPVQMVISSTSGFQAVYEQMAKLKDAARKSGIFIVS-DSDLEF 695 FN+PA G G +++ + G A+ + +L A + +VS + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 696 NQPVVKVWINRSKASDLGITMQSIGNTLAVLLGGNYINRFNLEGRSYQVIPQVPRDKRLS 755 + K+ +++ KA LG+++ I T++ LGG Y+N F GR ++ Q R+ Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 756 PDSLSGYYVATAAGQQVPLSTVVTIETATDPNSLTHFNQLNSATFSAVPMPGVTVGQAVD 815 P+ + YV +A G+ VP S T L +N L S PG + G A+ Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 816 FLEKQAKNLPSGFSHDYLADARQYVQEGNQLAITFGFALIIIFLVLAAQFESLRDPLVIM 875 +E A LP+G +D+ + Q GNQ + +++FL LAA +ES P+ +M Sbjct: 842 LMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVM 901 Query: 876 ISVPMAIVGALIPLFFGLATMNIYTQVGLLTLVGLITKHGILMVEFANELQLKEGVDRRT 935 + VP+ IVG L+ ++Y VGLLT +GL K+ IL+VEFA +L KEG Sbjct: 902 LVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVE 961 Query: 936 AIETSARIRLRPILMTTAAMVTGLIPLLTASGAGAASRFSIGLVVVAGMSIGTLFTLFVL 995 A + R+RLRPILMT+ A + G++PL ++GAG+ ++ ++G+ V+ GM TL +F + Sbjct: 962 ATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFV 1021 Query: 996 PAVYTVIAT 1004 P + VI Sbjct: 1022 PVFFVVIRR 1030
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 28.2 bits (63), Expect = 0.044 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 38 MAGEERDPAVIEQIRKQYRLDQPLPVQYGYWIKGVLSGDF--GESLRIKMPVRDLILQKL 95 + G+ D A+I +R+ Y + IK + + E I++ R+L + + Sbjct: 189 IGGDRFDEAIINYVRRNYGSL--IGEATAERIKHEIGSAYPGDEVREIEVRGRNLA-EGV 245 Query: 96 PVTLQLASMAIVIAFLIGIPAGIISAVKR 124 P L S I+ A L GI+SAV Sbjct: 246 PRGFTLNSNEILEA-LQEPLTGIVSAVMV 273
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.4 bits (118), Expect = 1e-08 Identities = 44/248 (17%), Positives = 83/248 (33%), Gaps = 40/248 (16%) Query: 131 ADTVQAQNDFITAITSMNKAKSALDLADIQYKRAKDLFEGRAIPLKDFQQAEATSVQAQN 190 + + + + +T + +N+ ++ + + L +AI + E V+A N Sbjct: 207 LNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVN 266 Query: 191 DMRSSQTALEAARN-----KLRILGFTD--------------AAIADFQNKGTIDRE--- 228 ++R ++ LE + K T I + + E Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQ 326 Query: 229 -ITIYAPIGGTVVQRKV-GPGQYVNAGASDPVFVI-GDLSTVWLTAFVRESDAALVDVGE 285 I AP+ V Q KV G V + + VI + T+ +TA V+ D ++VG+ Sbjct: 327 ASVIRAPVSVKVQQLKVHTEGGVVTTA--ETLMVIVPEDDTLEVTALVQNKDIGFINVGQ 384 Query: 286 EILVNVLALPGR---PLKASINYVA--TSIDPAT------RRLLVRATI--DNKDGLLKP 332 ++ V A P L + + D + + NK+ L Sbjct: 385 NAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSS 444 Query: 333 EMFANVTI 340 M I Sbjct: 445 GMAVTAEI 452 Score = 43.7 bits (103), Expect = 1e-06 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 4/125 (3%) Query: 85 ITEGKVAVDEDRSTPVFSPYAGRVTKLLARPGETVRQGQPLFVIEAADTVQAQNDFITAI 144 GK+ RS + V +++ + GE+VR+G L + A +A + Sbjct: 85 TANGKLTHS-GRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGA-EADTLKTQSS 142 Query: 145 TSMNKAKSALDLADIQYKRAKDLFEGRAIPLKDFQQAEATSVQAQNDMRSSQTALEAARN 204 + + + L E + FQ V + Q +N Sbjct: 143 LLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQ--FSTWQN 200 Query: 205 KLRIL 209 + Sbjct: 201 QKYQK 205
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 572 bits (1477), Expect = 0.0 Identities = 227/1063 (21%), Positives = 426/1063 (40%), Gaps = 61/1063 (5%) Query: 4 LVAIAVQRRFLMVGMFVAVLIGGLIAFRQLNIEAYPDPTPPMVDIVTQSPGLSAEEIERY 63 + ++R + + +++ G +A QL + YP PP V + PG A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 64 ITIPIETQVAGIKNLRTIRTISL-YGLSDVKLQFSFDYTYDEALQQVLNRLSQLSP-LPG 121 +T IE + GI NL + + S G + L F D A QV N+L +P LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 NVTPQISPL--SAVGEIYRYRLRGP-PGYSVLDLKTLQDWVLQRRFRAVPGVIDVTGWGG 178 V Q + S+ + PG + D+ ++ + GV DV +G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 179 KTKTYEIQVDFNKLVANGLTLPQLLQAVGNSNINVGGNTV------EIGTQSAVVRGVGL 232 + I +D + L LT ++ + N + + +A + Sbjct: 181 Q-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 233 IRSMDDLAN-TMVSQSGGNPVLVKDVANVTVAEKPRLGIAGLNNNDDIVQGIVLMRRGEQ 291 ++ ++ T+ S G+ V +KDVA V + + IA +N + + G Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAG-LGIKLATGAN 298 Query: 292 SSPTIARVEQLVDQINNSTILPPGVRIERIYDRKDLIDTTTHTVLHNMVVGIGLIVLLQW 351 + T ++ + ++ P G+++ YD + + H V+ + I L+ L+ + Sbjct: 299 ALDTAKAIKAKLAELQ--PFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMY 356 Query: 352 VFLGNLRSALIVGATIPFALFFAVIILVLRGESANLLSVG--AIDFGLIVDATVIMVEAI 409 +FL N+R+ LI +P L IL G S N L++ + GL+VD +++VE + Sbjct: 357 LFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV 416 Query: 410 FRRLSQTTPLSAAEESHISPETMMGMKSHAILSAAADVSRSIFFAAAIIIAAFLPLFTLS 469 R + E + P+ A + + + ++ A ++ A F+P+ Sbjct: 417 ERVM---------MEDKLPPK-------EATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460 Query: 470 GVEGNIFGPMARTYAYALAGGLLATFTVTPALSAIILPAHVEETETRLMRL--------- 520 G G I+ + T A+A +L +TPAL A +L E Sbjct: 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFD 520 Query: 521 -LHAIYAPVLRWAVGNRNLVITGAIGLVLLTVVVGRLLGLEFLPKLEEGNLWIRATLPPT 579 Y + +G+ + +V VV+ L FLP+ ++G LP Sbjct: 521 HSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAG 580 Query: 580 ISLQEGNAYVNEMRK--MIRARPEVEAVVSQHGRPDDGTDAAGFFNAEFFAPLKPVKDWP 637 + + ++++ + + VE+V + +G G F LKP ++ Sbjct: 581 ATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQN---AGMAFVSLKPWEERN 637 Query: 638 GTK-DKDQLTAELLKQLDDRFPGVEFNFSQYLQDNVSEAVSGVKGENSIKLYGNDLQALT 696 G + + + +L G F+ + V + I G ALT Sbjct: 638 GDENSAEAVIHRAKMELGKIRDGFVIPFN--MPAIVELGTATGFDFELIDQAGLGHDALT 695 Query: 697 DTANKIKQVLSTVQG-VTDLAVFTSLGQPTVQIDIDRAKAARYGLAPGDINATIKVAIGG 755 N++ + + + + ++++D+ KA G++ DIN TI A+GG Sbjct: 696 QARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG 755 Query: 756 DTAGDLYEPGSDRHFPIIVRLAPEYRKSAEAIENLRIGAQGPNGVTQIPLSEVATIKLVS 815 D + G R + V+ ++R E ++ L + + NG +P S T V Sbjct: 756 TYVNDFIDRG--RVKKLYVQADAKFRMLPEDVDKLYVRS--ANGEM-VPFSAFTTSHWVY 810 Query: 816 GAAYIYREQQERYLPIKFSVRERDLGSAIQEAQQKVAEQVQLPAGSRVEWVGEFGNLQDA 875 G+ + R + I+ + +A + LPAG +W G + + Sbjct: 811 GSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASK--LPAGIGYDWTGMSYQERLS 868 Query: 876 IKRLSIVVPISLALIGVLLWFNFGSMADTLLAMSVIPMAIFGGVVGLVLSGIPFSVSAAI 935 + +V IS ++ + L + S + + M V+P+ I G ++ L V + Sbjct: 869 GNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMV 928 Query: 936 GFIALFGIAVMDGIIILSQFNQLID-EGVDRIEAVIRTGELQLRPVLMTCVVAGIGLLPA 994 G + G++ + I+I+ L++ EG +EA + ++LRP+LMT + +G+LP Sbjct: 929 GLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPL 988 Query: 995 ALSTGIGSQVQKPLAIVVVTGMMLAPVVILITLPVLISLFSRR 1037 A+S G GS Q + I V+ GM+ A ++ + +PV + R Sbjct: 989 AISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 84.9 bits (210), Expect = 1e-18 Identities = 72/364 (19%), Positives = 147/364 (40%), Gaps = 19/364 (5%) Query: 688 YGNDLQALTDTANK-IKQVLSTVQGVTDLAVFTSLGQPTVQIDIDRAKAARYGLAPGDIN 746 G ++D +K LS + GV D+ +F Q ++I +D +Y L P D+ Sbjct: 147 PGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG--AQYAMRIWLDADLLNKYKLTPVDVI 204 Query: 747 ATIKVA----IGGDTAGDLYEPGSDRHFPIIVRLAPEYRKSAEAIENLRIGAQGPNGVTQ 802 +KV G G PG + II + K+ E + + +G + Sbjct: 205 NQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT---RFKNPEEFGKVTLRVN-SDG-SV 259 Query: 803 IPLSEVATIKLVSGAAYIYREQQERYLPIKFSVRERDLGSAIQEAQ---QKVAE-QVQLP 858 + L +VA ++L G Y + ++ +A+ A+ K+AE Q P Sbjct: 260 VRLKDVARVEL-GGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFP 318 Query: 859 AGSRVEWVGEFGNL-QDAIKRLSIVVPISLALIGVLLWFNFGSMADTLLAMSVIPMAIFG 917 G +V + + Q +I + + ++ L+ ++++ +M TL+ +P+ + G Sbjct: 319 QGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLG 378 Query: 918 GVVGLVLSGIPFSVSAAIGFIALFGIAVMDGIIILSQFNQ-LIDEGVDRIEAVIRTGELQ 976 L G + G + G+ V D I+++ + ++++ + EA ++ Sbjct: 379 TFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQI 438 Query: 977 LRPVLMTCVVAGIGLLPAALSTGIGSQVQKPLAIVVVTGMMLAPVVILITLPVLISLFSR 1036 ++ +V +P A G + + +I +V+ M L+ +V LI P L + + Sbjct: 439 QGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK 498 Query: 1037 RRVR 1040 Sbjct: 499 PVSA 502
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 31.7 bits (72), Expect = 0.009 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 6/91 (6%) Query: 206 VLVLSAIVSALAGFFYAGFGAVAAPENASFTFGTNLVIMVALGGRGTVIGPVIGALCIEV 265 VL + IV+ + G A GA A + M A G G V GPV+G L Sbjct: 98 VLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGF 157 Query: 266 ASAYLANSLP-YVWELIVGLALIIVILAFPD 295 + P + + GL + P+ Sbjct: 158 SPH-----APFFAAAALNGLNFLTGCFLLPE 183
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 28.6 bits (64), Expect = 0.030 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 159 GLSTKAVIMNEMLAQGLGVDSSRVRLITFALGSGLAALSGALITPLSSVDPNMGVPWLIG 218 G S K V ++ A+ L +++IT LG+G S A + S+D +MG L G Sbjct: 180 GTSHKYV--SQRAAEILNKPIESLKIITCHLGNGS---SIAAVKNGKSIDTSMGFTPLEG 234 Query: 219 AFM 221 M Sbjct: 235 LAM 237
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 64.3 bits (156), Expect = 3e-13 Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 26/160 (16%) Query: 143 TGQGSGFFISADGYAVTNNHVVDGADKVEVTTD------------DGKTYSAKVIGTDQR 190 T SG + +TN HVVD +G + ++ Sbjct: 101 TFIASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 159 Query: 191 TDLALIKVEG-------GSNFPFAKLA-DGKPRIGDWVLAVGNPFGLGGTVTAGIVSAVG 242 DLA++K G A ++ + + ++ + G P + Sbjct: 160 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKIT 219 Query: 243 RDIGNGPYDDFIQIDAPVNKGNSGGPAFDVDGNVVGVNTA 282 G +Q D GNSG P F+ V+G++ Sbjct: 220 YLKGEA-----MQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.8 bits (215), Expect = 8e-22 Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 11/159 (6%) Query: 7 SAMRLLIIEDDRESADYLVKAFREVGHVADLAGDGEEGLAMAESGDYDVLVVDRMLPKRD 66 + +L+ +DD L +A G+ + + +GD D++V D ++P + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 67 GLSLIGALRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVE----- 121 L+ ++ PVL++SA IK G DYLPKP+ EL+ + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 122 --VLSRRHGGPAEETTYKVGD----LELDRLSHRVARGK 154 + +++ VG E+ R+ R+ + Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD 160
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.1 bits (138), Expect = 1e-11 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 4/105 (3%) Query: 18 RIRVFFADDHPIVLDGI-KALIAEDAQLDLVGSALDGPTALRRAIDLRPDVVVLDLSMPG 76 + ADD + + +AL + + +A + D+VV D+ MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG---DGDLVVTDVVMPD 59 Query: 77 MSGIEVARKLLAACPSSRVLLLTVHEDAAYFRQALEIGIVGYVLK 121 + ++ ++ A P VL+++ +A E G Y+ K Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.4 bits (71), Expect = 0.009 Identities = 19/70 (27%), Positives = 30/70 (42%) Query: 343 AVIAAAPLSSALLFGLGTLLIGFGAGLFGHGTLTATMNLAPQDQAGLALGAWGAVQASAA 402 +VI S L + + G GA F + P++ G A G G++ A Sbjct: 93 SVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGE 152 Query: 403 GVAIALGGIM 412 GV A+GG++ Sbjct: 153 GVGPAIGGMI 162
>PF06580#Sensor histidine kinase Length = 349 Score = 37.9 bits (88), Expect = 6e-05 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 27/111 (24%) Query: 359 LVENAIKYGKPAALPLDPNAAAATREILIEARREGGQVLLSVTDHGEGIPEAERKHAVER 418 LVEN IK+G + IL++ ++ G V L V + G + ++ Sbjct: 263 LVENGIKHG------IAQLPQGGK--ILLKGTKDNGTVTLEVENTGSLALKNTKE----- 309 Query: 419 FVRLEASRTLPGSGLGLSLASA-VATLHGGE--LRLGDARPGLIATLVLPA 466 +G GL + L+G E ++L + + + A +++P Sbjct: 310 -----------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.7 bits (69), Expect = 0.013 Identities = 39/154 (25%), Positives = 55/154 (35%), Gaps = 33/154 (21%) Query: 14 TAQSVAAPADEPRLVRSLTLTHAVLYGMGVTIGAGIYVLV-GIAAGRSGMHAPLAFIGAA 72 T AA + LT VL +G I Y++ A G S A I +A Sbjct: 265 TRTKAAAGVE---------LTTKVLGNVGKGISQ--YIIAQRAAQGLSTSAAAAGLIASA 313 Query: 73 LVMSFSAASFAELGTRMPVSASEAAYVQ-------------AAFQRKWLSLGTGLLVVLT 119 + ++ S SF + + + Y Q AAF + TG + Sbjct: 314 VTLAISPLSFLSIADKFKRANKIEEYSQRFKKLGYDGDSLLAAFHK-----ETGAIDASL 368 Query: 120 ATVSA--ATVSRG-SAGYVAVFVSAPAPLIVCGV 150 T+S A+VS G SA V AP +V V Sbjct: 369 TTISTVLASVSSGISAAATTSLVGAPVSALVGAV 402
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.4 bits (66), Expect = 0.021 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 16/96 (16%) Query: 255 VLFGLTGGLIPCPAAITVLLLCIQLKQFSLGFVLVLCFGIGLAITMVSAGVLAALSLRHV 314 ++ G+TG A + + GF + CFG G+ V G++ S Sbjct: 104 IVAGITGATGAVAGAYIADITDGDERARHFGF-MSACFGFGMVAGPVLGGLMGGFS---- 158 Query: 315 ERHWSGFSRFAHRAPYVSAALIVLVGLYTGWLGLHE 350 AP+ +AA + + TG L E Sbjct: 159 -----------PHAPFFAAAALNGLNFLTGCFLLPE 183
>PF03944#delta endotoxin Length = 633 Score = 27.3 bits (60), Expect = 0.024 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Query: 51 KMLGELRSTMMGNTGSETLLDRLTAQEKWLSARL--DATRSLRTTLGNLVATFSDEQKTA 108 ++L ELR+ + + + + D L E++L+ RL D + L L A +E Sbjct: 72 RILSELRNLIFPSGSTNLMQDILRETERFLNQRLNTDTVARVNAELTGLQANV-EEFNRQ 130 Query: 109 ADELLAPNLGIMPMA 123 D L PN +P++ Sbjct: 131 VDNFLNPNRNAVPLS 145
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 693 bits (1789), Expect = 0.0 Identities = 219/1050 (20%), Positives = 435/1050 (41%), Gaps = 52/1050 (4%) Query: 11 RNLLLVLFGTGFAAAAGFYALIHLPLDAIPDLSDTQVIVYTEYSGQAPQVIEDQVTYPLT 70 R + AG A++ LP+ P ++ V V Y G Q ++D VT + Sbjct: 7 RRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIE 66 Query: 71 TAMLTVPKSKVVRGFSF-FGVSFVYVIFEDGTDIYWARSRVMEFLNSAASRLPAGV-TPT 128 M + + S G + + F+ GTD A+ +V L A LP V Sbjct: 67 QNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQG 126 Query: 129 IGPDATGVGWVYQYAVMS--KELNLADTRTLQDWNLKFALAKAEGVAEVASIGGFVKQYN 186 I + + ++ +S D N+K L++ GV +V G Sbjct: 127 ISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-QYAMR 185 Query: 187 VVLDPQRMRDRGISMQKIRDAIRASNADVGGRTVELS------EFEYVIRGKGYIKSIDD 240 + LD + ++ + + ++ N + + + + I + K+ ++ Sbjct: 186 IWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEE 245 Query: 241 LGNIVLK-NSGGTPVLLRDVAHVELGPDERRGIAELNGEGEVASGIVLQRFGVNALDVIE 299 G + L+ NS G+ V L+DVA VELG + IA +NG+ A + G NALD + Sbjct: 246 FGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGANALDTAK 304 Query: 300 NVKKRFKDIASSLPKSVEIVPVYDRSNLIYAAIDTLKHTLLEESLVVAFVCIVFLLHVRS 359 +K + ++ P+ ++++ YD + + +I + TL E ++V V +FL ++R+ Sbjct: 305 AIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRA 364 Query: 360 ALVAILMLPVGVLMAFGAMKLLGLGSNIMSLGGIAIAIGAMVDAAIVMIENAHKHLERAK 419 L+ + +PV +L F + G N +++ G+ +AIG +VD AIV++EN + + K Sbjct: 365 TLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDK 424 Query: 420 PDQSRVQILIDAAAEVGPALFFSLLIITVSFMPIFTLESQEGRLFSPLAFTKTFSMAAAA 479 + + +++ AL ++++ F+P+ G ++ + T +MA + Sbjct: 425 --LPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 480 LLSVTLVPALMVIFVRGRIVPEQRNPINRFLIW----------IYRPVIKSVLRAKMLVI 529 L+++ L PAL ++ N F W Y + +L + + Sbjct: 483 LVALILTPALCATLLKPVSAEHHENK-GGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 530 LAAVAVLAISVWPARQLGTEFMPSLNEGTLLYMPTTLPGISVTKAAELM-QMQDRIIKS- 587 L ++A V +L + F+P ++G L M G + + +++ Q+ D +K+ Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 588 FPEVASVYGKAGRAATATDPAPTEMFETVVNLKPKEQW-RAGVTIDSLIAEMDKALQFPG 646 V SV+ G + + F V+LKP E+ + +++I L Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAF---VSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 647 VSNAWTMPIKARIDMLSTGIRTPIGVKVMGTDLTEIDRLAKQIERVIKTVPGT-SSAYAE 705 + A +++ + + G + + Q+ + P + S Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 706 RGIGGYYLEITPDREALARYGLLIQDVQDTIAAALGGQTVTTTVEGRQRFTVNMRYPRDL 765 ++ D+E G+ + D+ TI+ ALGG V ++ + + ++ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 766 RDNPKAIASDVLVPMPSGGAVPLGEVAKIEPARGPTSIRTENGQLATYIYVDIRDRDIGS 825 R P+ + + V +G VP G + NG + I + G+ Sbjct: 779 RMLPEDVDK-LYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAP---GT 834 Query: 826 YVGDAQRAVTESI--QFPAGYYVVWSGQYEYLQRAAARLKIVIPVTLTIIFLLLYLNFRA 883 GDA A+ E++ + PAG W+G + + + ++ ++ ++FL L + + Sbjct: 835 SSGDAM-ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYES 893 Query: 884 MTETLIVMLSLPFALVGGIWMMWWLGFNLSVAVAVGFIALAGVAAETGVVMLIYLDHALA 943 + + VML +P +VG + V VG + G++A+ ++++ + Sbjct: 894 WSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEF------ 947 Query: 944 EMRARHAAENRTLTRQDLQDAIMEGAVERVRPKMMTVVAIMAGLLPIIWSTGTGSEIMQR 1003 A+ E + +A + R+RP +MT +A + G+LP+ S G GS Sbjct: 948 ---AKDLMEKEGKG---VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 1004 IAVPMIGGMISSTLLTLIVIPAIFGLVKGR 1033 + + ++GGM+S+TLL + +P F +++ Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 48.0 bits (114), Expect = 2e-08 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 3/115 (2%) Query: 47 QQILQDLPSHFGALHLLGVSERDSGRFDEAVLVLTRAIESDPRSAEAQSDLGLALFRLGR 106 + + L+ L ++ SG++++A V D + LG +G+ Sbjct: 26 AMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQ 85 Query: 107 YEEARARYERAIALRPNFPAALTHLGNTLMNLFRFEEAISAHDRAIAL---KPDY 158 Y+ A Y + P H L+ EA S A L K ++ Sbjct: 86 YDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140 Score = 37.6 bits (87), Expect = 6e-05 Identities = 15/92 (16%), Positives = 30/92 (32%) Query: 97 LGLALFRLGRYEEARARYERAIALRPNFPAALTHLGNTLMNLFRFEEAISAHDRAIALKP 156 L ++ G+YE+A ++ L LG + +++ AI ++ + Sbjct: 42 LAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDI 101 Query: 157 DYGEAHANRGMALMFTSRNGEAAESFDRALSL 188 + L+ EA A L Sbjct: 102 KEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.9 bits (116), Expect = 3e-09 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 4/181 (2%) Query: 16 SRQQRSRETTQALLAAGAELLCSRTLAELSISELCVQIGATVGAFYSRFDSKEAYFNALL 75 +Q ++ET Q +L L + ++ S+ E+ G T GA Y F K F+ + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 76 ALTLRDGREQLLKLPPAPPG--PGGADDQCLQLVRGIVVWMRRHKGVLRAALMRSESGAN 133 L+ + E L+ PG + + ++ V RR +L + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRR--LLMEIIFHKCEFVG 121 Query: 134 NWTGFKELAQALSERAAMVLLPLLHGARAPGRRAATAQERRTVAFGIQVVLGTLVNAILN 193 ++ + L + + L A RR + G + N + Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 194 D 194 Sbjct: 182 P 182
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 780 bits (2015), Expect = 0.0 Identities = 275/1040 (26%), Positives = 501/1040 (48%), Gaps = 37/1040 (3%) Query: 6 ISAPFIKYPIGTSLLMAGILFIGLVAYPLLPVAPLPQVDFPTIQVTANLPGGSPETMATS 65 ++ FI+ PI +L ++ G +A LPVA P + P + V+AN PG +T+ + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 66 VAQPLERQFAQIPGIAQMTSTS-YLGTAAITIQFDLNRNIDGAANDVQGAINAASGQLPK 124 V Q +E+ I + M+STS G+ IT+ F + D A VQ + A+ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 125 NLPSPPTYRKVNPADSPILLLSATSETLPLT--TVSDAVDAGLAQQISQISGVAQVIIGG 182 + + S +++ S+ T +SD V + + +S+++GV V + G Sbjct: 121 EVQQQGISV-EKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 183 QQKPSIRIQIDPAKLVAKGLSLEDVRSQIAITTVDAPKGNI------DGERRAYTIYAND 236 Q ++RI +D L L+ DV +Q+ + G + G++ +I A Sbjct: 180 AQY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 237 QLTDSKDWNDVII-AYRNGGPLRIRDIGQAVSAAEDAKQAAWANGQRGVFLVIFKQPGAN 295 + + +++ V + +G +R++D+ + E+ A NG+ L I GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 296 VIETVDRIKGLLPRLVAAIPPAIKIDVISDRTTTIRAAVEDVQFTLILTIFLVVMVIFIF 355 ++T IK L L P +K+ D T ++ ++ +V TL I LV +V+++F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 356 LRSFWATVIPTITVPLALLGACAMMWGVGYTLDNLSLMALTIAVGFVVDDAIVMLENISR 415 L++ AT+IPTI VP+ LLG A++ GY+++ L++ + +A+G +VDDAIV++EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 416 Y-VEEGETPMAAAYKGAKEIGFTIVSISISLVAVLIPLLLMGGIIGRLFREFAVVLAMTI 474 +E+ P A K +I +V I++ L AV IP+ GG G ++R+F++ + + Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 475 FVSMFVSLTLTPMMASRFLR---NEHAAQHGKFYQWSEAAFDAMLRAYEKGLDLALRWRF 531 +S+ V+L LTP + + L+ EH G F+ W FD + Y + L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 532 ATLMVFFATLGLSVYLFILIPKGFFPQQDVGLITAT----SEASQDISFKAMQSRQEALA 587 L+++ + V LF+ +P F P++D G+ + A+Q+ + K + + Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 588 KIVMADHDVASLAMNIGGSGRAGNNGNMFITLKPREERDA---TAQQIIARLRPQLEKVE 644 K A+ + SG+A N G F++LKP EER+ +A+ +I R + +L K+ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 645 GARLYMQAAQDIRLGGRPSRTQFEFTLQD---PNLAELNEWAPKILEKMRSLP-QLRDVA 700 + I G + T F+F L D L + ++L P L V Sbjct: 659 DGFVIPFNMPAIVELG--TATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 701 TDQQADGTTVQLAINRDTASRYGITPQLIDDTLYDAFGQRQVAQYFTQLNSYRVILEILP 760 + D +L ++++ A G++ I+ T+ A G V + + ++ ++ Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 761 ELQGSLDTLNKLYVKSPTTGDQVPLSTFAS--WTTAPVRPLSISHQGQFPSITISFNLAQ 818 + + + ++KLYV+S G+ VP S F + W + PS+ I A Sbjct: 777 KFRMLPEDVDKLYVRSAN-GEMVPFSAFTTSHWVYGSP---RLERYNGLPSMEIQGEAAP 832 Query: 819 GVALGQATDAVQRAMVELGAPSTLNSSFQGTAQAFQQSLSTVPLLILAALVVVYLILGIL 878 G + G A ++ +L P+ + + G + + S + P L+ + VVV+L L L Sbjct: 833 GTSSGDAMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 879 YESYIHPITILSTLPSAGVGALAILMAFGYDFSLIALIGVILLIGIVKKNGIMMVDFAIA 938 YES+ P++++ +P VG L F + ++G++ IG+ KN I++V+FA Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 939 AERDQHLPPEQSIRQAALLRFRPIMMTTMAALLGGVPLMLGNGTGSEIRQPLGYAMVGGL 998 + ++ A +R RPI+MT++A +LG +PL + NG GS + +G ++GG+ Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 999 IVSQMLTLFTTPVVYLYLDK 1018 + + +L +F PV ++ + + Sbjct: 1011 VSATLLAIFFVPVFFVVIRR 1030 Score = 104 bits (262), Expect = 6e-25 Identities = 70/508 (13%), Positives = 167/508 (32%), Gaps = 33/508 (6%) Query: 4 GGISAPFIKYPIGTSLLMAGILFIGLVAYPLLPVAPLPQVDFPTIQVTANLPGGSPETMA 63 + L+ A I+ +V + LP + LP+ D LP G+ + Sbjct: 527 TNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERT 586 Query: 64 TSVAQPLERQF--AQIPGIAQMTSTSYLGTAA-------ITIQFDLNRNIDGAANDVQGA 114 V + + + + + + + + + +G N + Sbjct: 587 QKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 115 INAASGQLPK---------NLPSPPTYRKVNPADSPILLLSATSETLPLTTVSDAVDAGL 165 I+ A +L K N+P+ D ++ + ++ A + L Sbjct: 647 IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLG----HDALTQARNQLL 702 Query: 166 AQQISQISGVAQVIIGGQQ-KPSIRIQIDPAKLVAKGLSLEDVRSQIAITTVDAPKGNID 224 + + V G + ++++D K A G+SL D+ I+ + Sbjct: 703 GMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFI 762 Query: 225 GERRAYTIYA---NDQLTDSKDWNDVIIAYRNGGPLRIRDIGQAVSAAEDAKQAAWANGQ 281 R +Y +D + + + NG + + + NG Sbjct: 763 DRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTT-SHWVYGSPRLERYNGL 821 Query: 282 RGVFLVIFKQPGANVIETVDRIKGLLPRLVAAIPPAIKIDVISDRTTTIRAAVEDVQFTL 341 + + PG + + + ++ L + +P I D + + R + + Sbjct: 822 PSMEIQGEAAPGTSSGDAMALME----NLASKLPAGIGYDW-TGMSYQERLSGNQAPALV 876 Query: 342 ILTIFLVVMVIFIFLRSFWATVIPTITVPLALLGACAMMWGVGYTLDNLSLMALTIAVGF 401 ++ +V + + S+ V + VPL ++G D ++ L +G Sbjct: 877 AISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGL 936 Query: 402 VVDDAIVMLENI-SRYVEEGETPMAAAYKGAKEIGFTIVSISISLVAVLIPLLLMGGIIG 460 +AI+++E +EG+ + A + I+ S++ + ++PL + G Sbjct: 937 SAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGS 996 Query: 461 RLFREFAVVLAMTIFVSMFVSLTLTPMM 488 + + + + +++ P+ Sbjct: 997 GAQNAVGIGVMGGMVSATLLAIFFVPVF 1024
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.2 bits (94), Expect = 1e-05 Identities = 17/108 (15%), Positives = 43/108 (39%), Gaps = 2/108 (1%) Query: 73 NTVQVRTRVDGQIDKIGFTEGQLVKEGDLLVEIDPRPFQAALDQAKAK--RAQDEANLNN 130 + +++ + + +I EG+ V++GD+L+++ +A + ++ +A+ E Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 131 ANLDLQRYTKLGEFATRQQTDTQRATVAQLTAQISADEAAIANAQTQL 178 KL E + Q + ++ S + + Q Q Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQK 202 Score = 32.1 bits (73), Expect = 0.003 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 3/96 (3%) Query: 111 QAALDQAKAKRAQDEANLNNANLDLQRY-TKLGEFATRQQTDTQRATVAQLTAQISADEA 169 + +A + ++ L ++ + + + + Q T I Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI-LDKLRQTTDNIGLLTL 316 Query: 170 AIANAQTQLSYTQVKAPISG-VAGLRQVDIGNIVNA 204 +A + + + ++AP+S V L+ G +V Sbjct: 317 ELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT 352
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 30.6 bits (69), Expect = 0.013 Identities = 19/129 (14%), Positives = 47/129 (36%) Query: 46 LQQEFGWSTAEISSALSIRFVLFGLMAPFAAALLNRYGLRNITLLAQVIVVSALLASLAM 105 + +F A + + + F + L ++ G++ + L +I + Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99 Query: 106 TQIWHLVLLWGFVIGIGTGMTALVLGATIATRWFVARRGLVVGVLTASTATGQLVFLPLL 165 + L+++ F+ G G ++ +A RG G++ + A G+ V + Sbjct: 100 HSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIG 159 Query: 166 ASLTERLGW 174 + + W Sbjct: 160 GMIAHYIHW 168 Score = 30.2 bits (68), Expect = 0.014 Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 5/159 (3%) Query: 242 VFWMLFATFFICGASTNGLIQVHLIPMCLDFGIPQVQAASLLAAMGIFDFFGTIVSGWLS 301 + W+ +FF ++ V L + DF P + A + GT V G LS Sbjct: 16 LIWLCILSFF--SVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 302 DRYDNRWLLFWYYGLRGLSLLFLPFTDFSFYGLSLFAMFYGLDWIATVPPTVRLTAQRFG 361 D+ + LL + + + + F SF+ L + A F A P V + R+ Sbjct: 74 DQLGIKRLLLFGIIINCFGSV-IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYI 132 Query: 362 T-ERANLVFGWVFAAHQLGAGTA-AFGAGLSRTLLQSYL 398 E FG + + +G G A G ++ + SYL Sbjct: 133 PKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYL 171
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.9 bits (137), Expect = 4e-12 Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 13/180 (7%) Query: 1 MRYSPEHKAETHARIVRKASVRLREKGAHGVGVADLMKEAGLTHGGFYAHFESREALVVE 60 R + + ET I+ A ++G + ++ K AG+T G Y HF+ + L E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 AFGYAMDRSVARWRKLLDELP--PQKRLAAIVDGYLSRQHRDDLGHGCAVPAL-GAEIAR 117 + + + + P P L I+ L ++ E Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 118 ESAKTRKAFAAKQEDLIQLFAGYIV----------DVPPKIARKRASAMLATLMGTLVMA 167 E A ++A + + D+ + A ++ LM + A Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181
>cdtoxinb#Cytolethal distending toxin B signature. Length = 269 Score = 30.0 bits (67), Expect = 0.015 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 153 KQFISGAGATDILVAMVRTGADGPGGISTLVIDAKTPGVSFGANERKMGWNAQPTRAVIF 212 +Q ISG A DIL V+ P +PG+ + N++P + I+ Sbjct: 46 RQLISGENAVDIL--AVQEAGSPPSTAVDTGTLIPSPGIPVRELIWNLSTNSRPQQVYIY 103 Query: 213 ENARVPVANRL 223 +A + R+ Sbjct: 104 FSAVDALGGRV 114
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 31.4 bits (71), Expect = 0.007 Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 16/135 (11%) Query: 134 GLGFFPDVGGTWLLSRAPGELGAYFGLTGQTMNGPDAIHARFADAVVPTERWPALREVLT 193 G+ + T +L +APG A N AV+P T Sbjct: 707 GVTLGQPLNDTVVLVKAPGAKDAKVE------NQTGVRTDWRGYAVLPY---------AT 751 Query: 194 KVRPGAVSLEIDQLIAGFATGETAGPVAAQQ-AKIDAWFAHDRMHDIFVALEADGSELAL 252 + R V+L+ + L V + A + A F + + L + L Sbjct: 752 EYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPF 811 Query: 253 ATLKTLKEKSPRGMV 267 + T + G+V Sbjct: 812 GAMVTSESSQSSGIV 826
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 82.8 bits (204), Expect = 1e-20 Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 10/201 (4%) Query: 6 DGRVAIVTGAGNGLGRAHALGLASRGARVVVNDFGGARDGTGGSLTAAETVVEEIRKAGG 65 +G++A +TGA G+G A A LAS+GA + D+ + E VV ++ Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEK---------LEKVVSSLKAEAR 57 Query: 66 TAMADGADVSNFEQVTAMVERATKEWGSVDIMCANAGILRDKSFGKMEVADFAKVLDVHL 125 A A ADV + + + R +E G +DI+ AG+LR + ++ V+ Sbjct: 58 HAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNS 117 Query: 126 VGTFYCCKAVWNGMRERNYGRIVMTTSSSGLFGNFGQANYGAAKSGMVGLMNVLAEEGRK 185 G F ++V M +R G IV S+ A Y ++K+ V L E + Sbjct: 118 TGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 186 TNIRVNIISP-TAATRMTEEL 205 NIR NI+SP + T M L Sbjct: 178 YNIRCNIVSPGSTETDMQWSL 198
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 48.0 bits (114), Expect = 2e-08 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 4/165 (2%) Query: 195 AALIREREHGTIEHLLVMPVTPSEIMLAKI-WSMGLVVLAASTFALGVVIHGLLAVPIEG 253 AA R T E +L + +I+L ++ W+ LA + + G Sbjct: 89 AAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWL--- 145 Query: 254 SWLLFLAGTALYLFATTSLGIFLATQAGTMPQFGLLLMLVLLPLQLLSGTMTPRESMPEL 313 S L L AL A SLG+ + A + F LV+ P+ LSG + P + +P + Sbjct: 146 SLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIV 205 Query: 314 IRDIMLAAPNTHFVMMAQSILFRGAGFDVVWRQFASLFVIGTILF 358 + P +H + + + I+ DV A I F Sbjct: 206 FQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFF 250
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.020 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 43 CMVGLLGPDGVGKSSLLSLIAGARVIQEGRVEVLGGDMADAA 84 V L G G+GKS+L++ + G + ++ G D+ Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI--GTGKDSY 636
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 73.3 bits (180), Expect = 3e-16 Identities = 65/412 (15%), Positives = 134/412 (32%), Gaps = 85/412 (20%) Query: 30 TKRPPPRTSWRKVLLLLLLLGAGGGYYAWQKLSHPGLPPGLASGNGRIEATEIDVSTKIA 89 + P R ++ L ++ G + +GR + + Sbjct: 49 IETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKE----IKPIEN 104 Query: 90 GRIKEILVNEGDFISAGQVLVRMDTEQLEARRRQAEAELRRAVIGVETAKSLIRQREAEG 149 +KEI+V EG+ + G VL+++ EA + ++ L +A + + L R E Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 150 VAAD--------ATVAQQDAK---------FEQAEKKRARSEQLIT-------------- 178 + V++++ F + ++ + E + Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 179 ----TAAVSQQVLDDDR---ANSLATKAAVSAAKAHAAATEAALSAAKAQVVDAEAAVDA 231 + V + LDD K AV + L K+Q+ E+ + + Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILS 284 Query: 232 ARAAIETISADI-----------------------------NDSTLRSPRDGRV-QYRVA 261 A+ + ++ S +R+P +V Q +V Sbjct: 285 AKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVH 344 Query: 262 QLGEVLAAGGRILNLVDLGDVY-MTFFLPTAEAGRVAMGSDVRLVLDAAPQYI---VPAK 317 G V+ ++ +V D +T + + G + +G + + ++A P + K Sbjct: 345 TEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGK 404 Query: 318 VTFVADVAQFTPKTVETEEERQKLMFRIKARISPELLRKNIRNVKTGLPGMA 369 V + A E++R L+F + I L +N+ GMA Sbjct: 405 VKNINLDA--------IEDQRLGLVFNVIISIEENCLSTGNKNIPLS-SGMA 447
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.8 bits (134), Expect = 5e-12 Identities = 30/182 (16%), Positives = 62/182 (34%), Gaps = 12/182 (6%) Query: 6 TSRPKTSSRERILKAAVKRFSQNSYERTSLRDIAGDVGIDVSYVHRCFGSKEKLFTEAI- 64 T + +R+ IL A++ FSQ TSL +IA G+ ++ F K LF+E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 65 RDAADMTDLIAGTPEEIAASMAQRAVSSRPPKGQALGIFIHSISSPEALPILRQFVLETA 124 +++ +L + + L + S + E +L + + Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVL-------REILIHVLESTVTEERRRLLMEIIFHKC 117 Query: 125 IEPLSGRIGDASARCATLAM-ALLTGVTLFRNVIRVKPFVES-DEDELRALIAGVLGAVL 182 + + R L + ++ I K ++ G + ++ Sbjct: 118 EFVGEMAVVQQAQRNLCLESYDRIEQ--TLKHCIEAKMLPADLMTRRAAIIMRGYISGLM 175 Query: 183 EH 184 E+ Sbjct: 176 EN 177
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.7 bits (64), Expect = 0.023 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 36 GVSAAETVIEAAPVPRRRTVLTALCFVAGFSLVFVGLGATASVFGRFIAGHLSQLGLVAG 95 G E + A + R ++T+L F+ G + + G AG +Q + G Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG----------AGSGAQNAVGIG 1005 Query: 96 LVIIMMGLHFLGLLRIPLLY 115 ++ M+ L + +P+ + Sbjct: 1006 VMGGMVSATLLAIFFVPVFF 1025
>SECA#SecA protein signature. Length = 901 Score = 31.0 bits (70), Expect = 0.014 Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 11/57 (19%) Query: 441 RDTDPGRV-------DDLLRRFGLDRKVKFVDGAFSTLDLSTGQRKRLAMIGALLEN 490 R D G D L+R F DR V G L + G+ + + N Sbjct: 577 RQGDAGSSRFYLSMEDALMRIFASDR----VSGMMRKLGMKPGEAIEHPWVTKAIAN 629
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 38.4 bits (89), Expect = 3e-05 Identities = 19/102 (18%), Positives = 26/102 (25%), Gaps = 2/102 (1%) Query: 307 AAQPKPADAAQSTAPAQPAASAPASSSASPSPSTGP--QSAVSPQPAAPLQPASPPQSAA 364 P PA T A P + P P P + P+P Sbjct: 41 IELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 100 Query: 365 PAQAPPQTLLYPQATAPSPPASRQFGVPRAQTGRGQPSPWSA 406 P P Q P + P T +P+ +A Sbjct: 101 PKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTA 142
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 97.8 bits (243), Expect = 4e-27 Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 11/173 (6%) Query: 28 ASEICHGDEELFPEELAHVRAAVAKRRAEFATARMLARRALASLGATPISLVPGADRAPV 87 AS D L+ +R+A KR+AE R+ A AL +G + G R P+ Sbjct: 22 ASSFREHDL-LWLPHHDRLRSAGRKRKAEHLAGRIAAVHALREVGVRTVP-GMGDKRQPL 79 Query: 88 WPSGYTGSISHCADYCAVVVARSRDVRALGLDIEDVRELEP--SMHDLVLTSGERAWLRR 145 WP G GSISHCA V++R + +G+DIE + + ++ S ER L+ Sbjct: 80 WPDGLFGSISHCATTALAVISR----QRIGIDIEKIMSQHTATELAPSIIDSDERQILQA 135 Query: 146 QPQELQPILPILFFSAKEAYYKCQYPITRGFLEFSDVELTIDWPAGAFEARVL 198 L + FSAKE+ YK + F+ ++T A +L Sbjct: 136 SLLPFPLALTLA-FSAKESVYKA-FSDRVTLPGFNSAKVTS-LTATHISLHLL 185
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.1 bits (70), Expect = 0.006 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Query: 71 LGADQFGRDVLSRLLSGARATVPMALAATLAGSAIGAVIGIGSAYLGGKSDEAIMRTNDA 130 L G D +S +LS A+ ++ A + A + + + LG + I + A Sbjct: 235 LDNIGAGLDTVSGILSAISASFILSNADADTRTKAAAGVELTTKVLGNVG-KGISQYIIA 293 Query: 131 VMAIPGLLMALLLVSTLGNGAGNAVVAIALAFAP 164 A GL ST AG A+ LA +P Sbjct: 294 QRAAQGL-------STSAAAAGLIASAVTLAISP 320
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 29.8 bits (66), Expect = 0.011 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 18/128 (14%) Query: 117 GLVSSAASWMVEKVLARLDLKHAFDVVITQEDVVRH-----KPDPEAYWLALSGLGVDAT 171 GL ++ + EKV A+ L H +VV+TQED + K + Y L G G Sbjct: 41 GLTIASGARESEKVFAQTVLSHVANVVLTQEDTAKLLQSTVKHNLNNYDLRSVGNGNSVL 100 Query: 172 TTL-----VFEDSLAGLKAA--KAAGCRCVAIRHSFNIRHDFSAADRE-IRSFDELAAAS 223 +L +D+ L+AA + +G R HS + H RE +RS Sbjct: 101 VSLRSDQMTLQDAKVLLEAALRQESGARGHVSSHSHSALHAPGTPVREGLRSH-----LD 155 Query: 224 SYAPPVAP 231 PP+ P Sbjct: 156 PRTPPLPP 163
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 36.6 bits (84), Expect = 6e-04 Identities = 59/355 (16%), Positives = 115/355 (32%), Gaps = 52/355 (14%) Query: 540 SAQTYRAKLDAQLAQVNQLNRDMEVAEKQQSAVTQPADERRKLLMDV-QKLSDGVTESQA 598 A + A++ + + + + A + L +A Sbjct: 131 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 190 Query: 599 RLDAISEKVTERERELKAESTKARQREIKQELERLRPALTAAEQDLNRRSLERDEAYSIA 658 R + + + A+ A+ + ++ E L E+ L + Sbjct: 191 RQAELEKALEGAMNFSTAD--SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKI 248 Query: 659 QQRGTDIAKALARSESIRAAKEGAESCARQIRAGIDALEQKVDEIRQQQR--EEAANAVR 716 + + A AR + A EGA + + A I LE + + ++ E + + Sbjct: 249 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLN 308 Query: 717 VNAENTLSDLSEFAQKNASLVPLEVGPLVAALKATLS-AKDPSKTSDALSALQRRLEEIP 775 N ++ DL + L A L S+ S +L+R L+ Sbjct: 309 ANRQSLRRDLDASREAKKQL---------EAEHQKLEEQNKISEAS--RQSLRRDLD--- 354 Query: 776 EFKRFRTSREEARQESAR----AELDQLSDTART-ISDFSESY--AKRNITSDN------ 822 SRE +Q A E +++S+ +R + ++ AK+ + Sbjct: 355 ------ASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSK 408 Query: 823 VQPLIKLKARLSEVL-------------VRPETNALKQAISESERELAQLHLEQA 864 + L KL L E + E ALK+ +++ ELA+L +A Sbjct: 409 LAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAGKA 463
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 251 bits (643), Expect = 6e-83 Identities = 114/365 (31%), Positives = 175/365 (47%), Gaps = 25/365 (6%) Query: 29 TIDLDALAANWRKLEKTAVPAECAGVIKADAYGCGIPQVARTLAAAGCKTFFVATLSEAK 88 ++DL AL N + + A A V+KA+AYG GI ++ + A F + L EA Sbjct: 8 SLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDG--FALLNLEEAI 65 Query: 89 VARTALPDSAALYVLDGFFQNTG-EDYAAINCRPVIGDLNELAEWDMFCRRTGWKGGAAI 147 R + +L+GFF E Y + +L + K I Sbjct: 66 TLRER-GWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKA----LQNARLKAPLDI 120 Query: 148 H--VDTGMNRLGFTPTDAQGMIPRIQ-SGDHGITLIMSHLASAEQLNSPSNARQLSLFRE 204 + V++GMNRLGF P + +++ + G +MSH A AE + S ++ + Sbjct: 121 YLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISG--AMARIEQ 178 Query: 205 VASVFTGVPAALAASSGIFLGAAFQFDMVRPGAALYGINPTPE----ADNPMQPVAEIKA 260 A +L+ S+ FD VRPG LYG +P+ + A+ ++PV + + Sbjct: 179 AAE-GLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSS 237 Query: 261 RIVQLRDLARGDTVGYGGTWTARRPTKIAILSAGYADGYFRAASSNDGTRGADVVIAGQR 320 I+ ++ L G+ VGYGG +TAR +I I++AGYADGY R A + G V++ G R Sbjct: 238 EIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPT-----GTPVLVDGVR 292 Query: 321 CPVAGRVSMDLIAVDVTDLPPKAARRGHFATLLGEGITVDELAHHFGTIGYEVMTNLGRR 380 G VSMD++AVD+T P A G L G+ I +D++A GT+GYE+M L R Sbjct: 293 TMTVGTVSMDMLAVDLTPCP--QAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALR 350 Query: 381 YHRIY 385 + Sbjct: 351 VPVVT 355
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.002 Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 20/192 (10%) Query: 91 DARSMGHSGKDGKDGKETRTERRARSAVSAEPSEAKPDDAGGPAEPRRRSGHHKRSERSA 150 + G + KET+T +A + +AK E + K + + + Sbjct: 1078 ANTQTNEVAQSGSETKETQTTETKETATVEKEEKAK-------VETEKTQEVPKVTSQVS 1130 Query: 151 PAEGKPEAVPEAGTAPADGDGQSSAKGRHGKRKKPAPQDGAAADDPRSEPTGATRPAAAR 210 P + + E V + D + K + A + A + + T Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 211 DDNATRSEPPRVAPATS-------------SEAAPALRADPVPPVTPAPATTQAVPTAAS 257 N+ P PAT+ + ++R+ P ++ A Sbjct: 1191 TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALC 1250 Query: 258 SADDASAPSSPS 269 + + S Sbjct: 1251 DLTSTNTNAVLS 1262
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 125 bits (316), Expect = 2e-37 Identities = 82/251 (32%), Positives = 123/251 (49%), Gaps = 13/251 (5%) Query: 4 LSGRTALVTGATGGIGNAIAKAMHAQGATVAISGTRREVLETLAGEL---GSRVHVLPCN 60 + G+ A +TGA GIG A+A+ + +QGA +A E LE + L P + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 LSDSAEVEALVPAAEQAMGQVDILVANAGITRDNLFVQLRDEDWDEVIKVNLTATFRLSR 120 + DSA ++ + E+ MG +DILV AG+ R L L DE+W+ VN T F SR Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 121 AATKLMMRKRFGRIIAITSIVGVTGNPGQGNYTASKAGIIGMIKTLGAEYAKRGVTANCI 180 + +K MM +R G I+ + S Y +SKA + K LG E A+ + N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 181 APGFIKTPM-----TDALNDKQR-----ETILAKVPAARLGTPEDIAAAAVYLASNEAAY 230 +PG +T M D +Q ET +P +L P DIA A ++L S +A + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 231 VTGQTIHVNGG 241 +T + V+GG Sbjct: 246 ITMHNLCVDGG 256
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 25.6 bits (56), Expect = 0.021 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Query: 34 GADSLDTVELVMAFEEEFGCEIPDDAAETILTVGDATKFLEK 75 GA++LDT + + A E P +L D T F++ Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGM--KVLYPYDTTPFVQL 335
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.003 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 321 ETYDLHQKNVAKLRAMERQTQNDTVEPEEAPAATAAGAVDPAAAAAAPRAPTGAKKPPAN 380 ET + ++ AK+ E+ + V + +P + V P A A PT K P + Sbjct: 1102 ETATVEKEEKAKVET-EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQS 1160 Query: 381 RASGAPAPAAGGRQGAAQSSPPVVQQ 406 + + ++ ++ PV + Sbjct: 1161 QTNTTADTEQPAKETSSNVEQPVTES 1186
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.5 bits (76), Expect = 0.004 Identities = 30/251 (11%), Positives = 78/251 (31%), Gaps = 20/251 (7%) Query: 249 QMAARTRRSRAKPRTKAKAPAFGQRSARNGSGAGDGFRTQETASALDLASARLSAATQDQ 308 + A + +K K + A + +A+N A + + + + ++ + + Sbjct: 1038 ETVAENSKQESKTVEKNEQDA-TETTAQNREVAKEAKSNVKA----NTQTNEVAQSGSET 1092 Query: 309 AGARPRAAAPAPYQDHSNDVPSRHDRDQAAELPKLQPAEAVWQAADDLAARAAGRHSAMM 368 + + ++ + ++ E+PK+ + Q + + + Sbjct: 1093 KETQTTETKETATVEKEEK--AKVETEKTQEVPKVTSQVSPKQEQSE-TVQPQAEPAREN 1149 Query: 369 AQAVLSQGVQTQGSMAQGSMTSADMPIPSAQIAPAVPPATAPAFAAPPAAAAKASASSAE 428 V + Q+Q + T+AD P+ + + V + S E Sbjct: 1150 DPTVNIKEPQSQTN------TTADTEQPAKETSSNVEQPVTES------TTVNTGNSVVE 1197 Query: 429 MALQGWSAQTRPAATWPGAQAPDAQIAAPASAAPSQTGAPAAPAPPPAPVDVAEIVSALR 488 A T+P + P + + P + + V + ++ S Sbjct: 1198 NPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNT 1257 Query: 489 KARTGNAASQT 499 A +A ++ Sbjct: 1258 NAVLSDARAKA 1268 Score = 32.7 bits (74), Expect = 0.007 Identities = 28/132 (21%), Positives = 41/132 (31%), Gaps = 13/132 (9%) Query: 73 APPRTPQQPAPWDFAQPAPPKLTAKRTDGPAPRANAEALAEAP----QPRVRTDLAIRGT 128 P+ Q A+PA P + N A E P V + T Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 129 PKPQN-VAITPTTLTASDANLPRSLDASPWP--------SSPPPQTEPAISDSQPAAAIA 179 N V P T + + ++S P S P EPA + S + +A Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248 Query: 180 ADDNVELDSNAA 191 D ++NA Sbjct: 1249 LCDLTSTNTNAV 1260
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.7 bits (90), Expect = 4e-05 Identities = 23/171 (13%), Positives = 56/171 (32%), Gaps = 19/171 (11%) Query: 88 NTVTVRSQVDGKLIAVNFVEGQDVKQGDVLAEIDPAIYQAQYDQAVAKKAQDEAQLANQK 147 + ++ + + + EG+ V++GDVL ++ +A + ++ L + Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKT-------QSSLLQAR 147 Query: 148 LDLARYEQLAASSAGSKQQADTQRAVVAQQQALIKADQAAIDNAAATLSYTKIVAPISGR 207 L+ RY+ L+ S +K Q + S + Sbjct: 148 LEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ-------- 199 Query: 208 AGLRQVDQGNI-IRASDATGLVVITQLQPIAVQFSLPQQQIMRVNAAAAKG 257 Q Q + + A L V+ ++ + + ++ ++ K Sbjct: 200 ---NQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQ 247 Score = 32.5 bits (74), Expect = 0.004 Identities = 19/129 (14%), Positives = 49/129 (37%), Gaps = 11/129 (8%) Query: 125 YQAQYDQAVAKKAQDEAQLANQKLDLARYEQLAASSAGSKQQADTQRAVVAQQQALIKAD 184 + ++ Q E+++ + K + QL + + T + L K + Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI-LDKLRQTTDNIGLLTLELAKNE 322 Query: 185 QAAIDNAAATLSYTKIVAPISGR-AGLRQVDQGNIIRASDATGLVVITQLQPIAVQFSLP 243 + + I AP+S + L+ +G ++ ++ T +V++ + + V + Sbjct: 323 ER--------QQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALVQ 373 Query: 244 QQQIMRVNA 252 + I +N Sbjct: 374 NKDIGFINV 382
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 765 bits (1976), Expect = 0.0 Identities = 277/1031 (26%), Positives = 495/1031 (48%), Gaps = 26/1031 (2%) Query: 7 FIRRPIATSLLGVALLIGGLLGYLALPVSALPQVDFPTVQVTTQLPGASPDVIAALITAP 66 FIRRPI +L + L++ G L L LPV+ P + P V V+ PGA + +T Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 67 LERQLGQIPSLAAMNSTS-SFGVSQISLQFDLGRDIDGATQDVQAAINAAAGVLPKSLPY 125 +E+ + I +L M+STS S G I+L F G D D A VQ + A +LP+ + Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ- 123 Query: 126 PPTYAKVNPADAPVITLALTSDT--VSLRAMSDMADTILAQRLSQVSGVGRVSVLGGLKP 183 + + + ++ SD + +SD + + LS+++GVG V + G + Sbjct: 124 QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-QY 182 Query: 184 AVRVQADLARLAAYGISMEDLRAAIAGANVSGPKGSLDGAQQA------YLITANDQIAA 237 A+R+ D L Y ++ D+ + N G L G I A + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 238 ADAYRPIII-AYRNGSPVTIGDVATIVDGLENDRTGGWYQGVPAVILDIQRQPGANVIEV 296 + + + + +GS V + DVA + G EN G PA L I+ GAN ++ Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 297 VRQIRAEIPKLQRTIPAGVKLAIVSDRTVTIRASVHDVQFTLVLSVVLVTLVVLLFLRSL 356 + I+A++ +LQ P G+K+ D T ++ S+H+V TL +++LV LV+ LFL+++ Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 357 RATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENIVRHM-E 415 RAT+I +A+P+ L+ +F ++ G+S++ L++ + + G +VDDAIV++EN+ R M E Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 416 NGESAMNASLRGAREIGFTVISLTVSLIAVFIPLLFMSGLVGRMFREFALTLTIAVVTSA 475 + A+ + +I ++ + + L AVFIP+ F G G ++R+F++T+ A+ S Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 476 VVSLTLTPMMCSRLLKHASDEWVLPG---LNAISRFIDRTVAVYHRSLLWVLDRQTETLV 532 +V+L LTP +C+ LLK S E + D +V Y S+ +L L+ Sbjct: 483 LVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLL 542 Query: 533 VTFATLAATLALYVVAPKGFLPLQDTGSITAVTEAGPDVSFAEMQRRQQEVAAAIQAD-- 590 + +A + L++ P FLP +D G + + + Q+ +V + Sbjct: 543 IYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEK 602 Query: 591 PDVVGVVSVIGAGSVNPTTNVGRLVMTLKPLGERQDG---VAAVIDRLKQKTAGVPGMTV 647 +V V +V G N G ++LKP ER AVI R K + + V Sbjct: 603 ANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFV 662 Query: 648 YFQPVQDVQISTQASRSQYQYTLTGADAGDVAKWAGQLVAEMRRD--PLFRDVSSEAQEG 705 + + A+ ++ D A + M V E Sbjct: 663 IPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLED 722 Query: 706 GLRAELTIDRQRAGQLGVSLQGVTDTLNDAFAQRQISTIYGQANQYRVVLEAMPMYQRDP 765 + +L +D+++A LGVSL + T++ A ++ + ++ ++A ++ P Sbjct: 723 TAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLP 782 Query: 766 SILSKLYLPGAGGQ-VPLSAVASLKRTTAPLAISHQAQFPAVQLSFNLAPGVALSEAVDA 824 + KLY+ A G+ VP SA + + P++++ APG + +A+ Sbjct: 783 EDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMAL 842 Query: 825 LHATENRIGMPGSIIGVYSGDAAEFAKSLAGQPWLLLAAVITIYIVLGVLYESYIHPITI 884 + ++ +P I ++G + + S P L+ + + +++ L LYES+ P+++ Sbjct: 843 MENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 885 LSTLPSAGVGAILALMLFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALEAERHENRTPY 944 + +P VG +LA LF Q V ++G++ +G+ KNAI++++FA + E + Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 945 DAIVQACLLRFRPIMMTTLAALFGALPLAIESGTGSELRFPLGISIIGGLLLSQLLTLYT 1004 +A + A +R RPI+MT+LA + G LPLAI +G GS + +GI ++GG++ + LL ++ Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1005 TPVIYLALDRL 1015 PV ++ + R Sbjct: 1021 VPVFFVVIRRC 1031 Score = 89.1 bits (221), Expect = 5e-20 Identities = 77/503 (15%), Positives = 173/503 (34%), Gaps = 33/503 (6%) Query: 6 PFIRRPIATSLLGVALLIGGLLGYLALPVSALPQVDFPTVQVTTQLP-GASPDVIAALIT 64 + L+ ++ G ++ +L LP S LP+ D QLP GA+ + ++ Sbjct: 532 KILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLD 591 Query: 65 APLERQL----------GQIPSLAAMNSTSSFGVSQISLQFDLGRDIDGATQD-VQAAIN 113 + L + + + G++ +SL+ R+ D + + V Sbjct: 592 QVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAK 651 Query: 114 AAAGVLPKSLPYPPTYAKVNPADAPVITLALTSDTVSLRA-----MSDMADTILAQRLSQ 168 G + P + + + ++ + +L Sbjct: 652 MELGKIRDGFVIPF---NMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQH 708 Query: 169 VSGVGRVSVLG-GLKPAVRVQADLARLAAYGISMEDLRAAIAGANVSGPKGS---LDGAQ 224 + + V G +++ D + A G+S+ D+ I + G + G Sbjct: 709 PASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTI-STALGGTYVNDFIDRGRV 767 Query: 225 QAYLITANDQIA-AADAYRPIIIAYRNGSPVTIGDVATIVDGLENDRTGGWYQGVPAVIL 283 + + A+ + + + + NG V T + R Y G+P++ + Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLER-YNGLPSMEI 826 Query: 284 DIQRQPGANVIEVVRQIRAEIPKLQRTIPAGVKLAIVSDRTVTIRASVHDVQFTLVLSVV 343 + PG A + L +PAG+ + + R S + + +S V Sbjct: 827 QGEAAPGT----SSGDAMALMENLASKLPAGIGYD-WTGMSYQERLSGNQAPALVAISFV 881 Query: 344 LVTLVVLLFLRSLRATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMALTIGTGFVVDDA 403 +V L + S + + +PL ++ D ++ L G +A Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 404 IVMIENIVRHME-NGESAMNASLRGAREIGFTVISLTVSLIAVFIPLLFMSGLVGRMFRE 462 I+++E ME G+ + A+L R ++ +++ I +PL +G Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 463 FALTLTIAVVTSAVVSLTLTPMM 485 + + +V++ ++++ P+ Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVF 1024
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 731 bits (1888), Expect = 0.0 Identities = 278/1040 (26%), Positives = 495/1040 (47%), Gaps = 32/1040 (3%) Query: 5 ISEPFIRRPVGTTLLSIGLFLVGIVAYIFLPVAPVPNVDFPSIFVTATRPGADPSVMAGT 64 ++ FIRRP+ +L+I L + G +A + LPVA P + P++ V+A PGAD + T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VAAPLERRLGEIAGVDQITSTS-SLGTTNIQIQFSIGRDIDKAARDVQAAINASLSDLPS 123 V +E+ + I + ++STS S G+ I + F G D D A VQ + + LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 DLPALPRFRKANTAAAPVFVLALTS--KTLTPSAMYDVADTVLAQRLFQVPGVGNVTVSG 181 ++ ++++ + V S T + D + + L ++ GVG+V + G Sbjct: 121 EVQQ-QGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 182 ADQPAVRIALNPVSLANAGISTDDVRTAIINANPIGPVGIFEGGRQSE------TIAINR 235 A Q A+RI L+ L ++ DV + N G G +I Sbjct: 180 A-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 236 QMRTAAEFRDILIKSS-NGSFVRLSDVADVEDSVRNVRSIAWFNKQPAVLIQIAKQGDAN 294 + + EF + ++ + +GS VRL DVA VE N IA N +PA + I AN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 295 VIETVDRVKALIPELKQWLPAGIEISTLIDRTGTIRASVEDMQWTLLATAVLVMVVVFLF 354 ++T +KA + EL+ + P G+++ D T ++ S+ ++ TL +LV +V++LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 355 LRRLVPTVAAGVSVPLALAGTCAAMWLAGFSIDNLSLMALAISVGFVVDDAIVMIENMYR 414 L+ + T+ ++VP+ L GT A + G+SI+ L++ + +++G +VDDAIV++EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 415 -NLEHGLPPMRAALDGARQIGFTVLSISLSLIAAFVPLIFMDGVVGRLLREFSLTLTFAI 473 +E LPP A QI ++ I++ L A F+P+ F G G + R+FS+T+ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 474 VVSTLVSLTVTPMICAHYIK-------ETLSDRASWFDRIVEGSLSGMVRFYAWTLRGVL 526 +S LV+L +TP +CA +K E WF+ + S++ L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 527 VYPFLTLMVFFATIALTVTLYIKVPKGYFPTDDSGFIIGATRASADISFQSMLSLQQRLA 586 Y L+++ +A V L++++P + P +D G + + A + + + ++ Sbjct: 539 RY----LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 587 DIVMADPAVAGIGSTIG-GGGGPGGATSNRGTMFINLKPPAERDGV--STELVINRLRRS 643 D + + A + S G G N G F++LKP ER+G S E VI+R + Sbjct: 595 DYYLKNEK-ANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKME 653 Query: 644 LAMVPGIRLFMFAAQDVRAGGRQSDSDYQYT-LSSPDLDLLQKWAPIVAKRLETV-EGIT 701 L + + F + G + D++ + D L + + + Sbjct: 654 LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLV 713 Query: 702 DISSDRDPGGLQLALRIDRQKAASLGVRVQDIDTALNNAFAQRQISIVYSQRNQYMVVLE 761 + + Q L +D++KA +LGV + DI+ ++ A ++ + + ++ Sbjct: 714 SVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQ 773 Query: 762 IDPKFQTDPSNLDRIYVAGAGDAQIPLSALVKAERGLSPLAVFHSQSFPSTTVSFNLLPD 821 D KF+ P ++D++YV A +P SA + + PS + P Sbjct: 774 ADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPG 833 Query: 822 VPLQAATANIQRAVDELHMPEGIRGGFDGNAGDFNKGSGRQPLLILSALVAMYIVLGVLY 881 A A ++ +L P GI + G + + P L+ + V +++ L LY Sbjct: 834 TSSGDAMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALY 891 Query: 882 ESLAHPLTIISTLPSAGLGALLALQVTNTPLTVIAFVGIILLIGIVKKNGIMLVDFALEA 941 ES + P++++ +P +G LLA + N V VG++ IG+ KN I++V+FA + Sbjct: 892 ESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDL 951 Query: 942 ERQRGMSSADAIFEACRVRFRPILMTTLAALFAGLPLVLATGPGTELRRPLGITIIGGLL 1001 + G +A A R+R RPILMT+LA + LPL ++ G G+ + +GI ++GG++ Sbjct: 952 MEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMV 1011 Query: 1002 VSQILTLYTTPVIYLLIDRL 1021 + +L ++ PV +++I R Sbjct: 1012 SATLLAIFFVPVFFVVIRRC 1031
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 2e-18 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 2 TNILVVDDEVGVCCVIQHLLVREGYAVTALTDGRQALDVVARSDFAAALIDLNLADIDGN 61 ILV DD+ + V+ L R GY V ++ +A D + D+ + D + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 DVIRAARAARPNMPIVMMSGMVLESDHGMPESLGLSARVQRLHRLAKPFKPKDLAQLMRE 121 D++ + ARP++P+++MS + ++ L KPF +L ++ Sbjct: 64 DLLPRIKKARPDLPVLVMSA------QNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 122 ILTPDEA 128 L + Sbjct: 118 ALAEPKR 124
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.7 bits (233), Expect = 2e-25 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 7/146 (4%) Query: 2 PTVLIIDDDSATRAALETLLKKKKFCVFLAPDGPTGIRLIGSVSFDAVVIDMFMPGMDGI 61 T+L+ DDD+A R L L + + V + + T R I + D VV D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 ATIRELIKIDPTVPFIAISGYAFTDKKQGAPDFLGMAIKLGATAALQKPFDLLDLLEAVD 121 + + K P +P + +S A + GA L KPFDL +L+ + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQ-------NTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 122 RAIEVRQRLLADARGNLAPHRHLSGE 147 RA+ +R + + L G Sbjct: 117 RALAEPKRRPSKLEDDSQDGMPLVGR 142
>PF07675#Cleaved Adhesin Length = 1358 Score = 30.1 bits (67), Expect = 0.018 Identities = 18/81 (22%), Positives = 32/81 (39%) Query: 297 VPLSLPEDSTTASLPSAAGAAGKANGSPAAQRTALAAAGGSQDTVAHAGGGEPKMITVTV 356 +P SLP++ + S+ ++AG+ + T +A A G E V + Sbjct: 254 LPASLPQNQASYSIQASAGSYVAISKDGVLYGTGVANASGVATVNMTKQITENGNYDVVI 313 Query: 357 ARGDSLWHISRRLLGGGTRYA 377 R + L I + G + Y Sbjct: 314 TRSNYLPVIKQIQAGEPSPYQ 334
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 35.1 bits (80), Expect = 6e-04 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 192 DREARLESRSPVLANVQPNQATKLAGVDNVLTRLTRSLDQVEARQLAMLSSAEETLESKL 251 +R+AR + + L ++ + KL V+ L +S D+ + + S AEETL++ Sbjct: 664 NRDARAIAYAQNLKGIKRELSDKLENVNKNLKDFDKSFDEFKNGKNKDFSKAEETLKA-- 721 Query: 252 RRMRGVITDLGLD 264 ++G + DLG++ Sbjct: 722 --LKGSVKDLGIN 732
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 30.8 bits (69), Expect = 0.036 Identities = 60/286 (20%), Positives = 95/286 (33%), Gaps = 33/286 (11%) Query: 99 GAGGVRFISARNVDLTFKGAISTNGGAGIVAYSGGEPSF-DVRVSSTGNISTRGAGAAGI 157 G+G R S+ + L I++ A I Y G + V GN+ G Sbjct: 208 GSGAGRKASSTVLTLQASEGITSRENAEISLYDGATLNLASNSVKLMGNVWMGRLQYVGA 267 Query: 158 TAGTSCCGGVTLDSTGDISTNGNSSNGL-VAQAGAFSSAVTSKGNVTTAGDSSAAIAAFS 216 S T TG+++ N + AQAG +S T G + + I A Sbjct: 268 YLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPP 327 Query: 217 SGSLARISSQGNLATSGSSAPGITASGRDIAINSIGNIVTSGSGSDGILARSTSFGQLSS 276 G + N S ++ ++ + N+ V + S Q + Sbjct: 328 EGGY---KDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNS----------AQKTE 374 Query: 277 ISSNGNITASGDGSYAIHAITSSIGNTTVTNLGGTISGGPGAGAGIYLQGGNANVLTNYG 336 I I DG +A T N TN GTI G G A++ TN Sbjct: 375 IQPTQVI----DGPFAGGKNTVVNINRINTNADGTIRVG----------GFKASLTTNAA 420 Query: 337 TVTSAAGTAGSAILGDTGNIVVNNSGTIIGSVNLGRGTNSFNNLAG 382 + G + +++V N + G++ + G NN G Sbjct: 421 HLHIGKGGINLSNQASGRSLLVEN---LTGNITVD-GPLRVNNQVG 462
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.4 bits (71), Expect = 0.008 Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 22/190 (11%) Query: 236 LRHHA--FWALFATFFFTAIGMYAIAPQVVAYLIDAGFAPLQAATAWGFSGVVLLF--GM 291 LRH+ W +FF + + V I F A+T W + +L F G Sbjct: 10 LRHNQILIWLCILSFFSV---LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGT 66 Query: 292 LGVSALDGLIGRRPSVLFSYAVSIAGILMLWALQVWPNILLLTGFVVCFGSMIGSRGPLL 351 L +G + +LF ++ G ++ + + ++L++ F+ G + P L Sbjct: 67 AVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG---AAAFPAL 123 Query: 352 SATAMKIF-----RGKRLGTIYGTITIGSGLGSALGSWSGGVIHDLTHGYDAVILLALVS 406 + + RGK G I + +G G+G A+G G + H + Y ++L+ +++ Sbjct: 124 VMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIG---GMIAHYIHWSY--LLLIPMIT 178 Query: 407 VIIGMIPFLV 416 +I +PFL+ Sbjct: 179 II--TVPFLM 186
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.2 bits (96), Expect = 2e-07 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 17/118 (14%) Query: 13 QKAAQQARQGILQKFKAQPGPDDPEVVKRRQEREAAAARREQQRLE-------------R 59 + + I + +A P P E A +++E + +E R Sbjct: 1007 VPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNR 1066 Query: 60 EAAKAEQKRLEEEAKAAEAARLAREAEEAAARLAE----MEAEQKAKRDARYAARKAR 113 E AK + ++ + E A+ E +E + +E E+KAK + + Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPK 1124 Score = 33.5 bits (76), Expect = 1e-04 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 7/107 (6%) Query: 12 RQKAAQQARQGILQKFKAQPG-PDDP---EVVKRRQEREAA---AARREQQRLEREAAKA 64 Q A + Q +A+ + EV + E + + + E AK Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 65 EQKRLEEEAKAAEAARLAREAEEAAARLAEMEAEQKAKRDARYAARK 111 E ++ +E K +E E AE E + + + Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161
>PERTACTIN#Pertactin signature. Length = 922 Score = 29.3 bits (65), Expect = 0.021 Identities = 19/43 (44%), Positives = 21/43 (48%) Query: 54 PAAAVQPGGQPHAQPPRQGSGPVAGQPSGPGPRAAAAPQARPP 96 P A QPG QP QPP+ P QP P R AP +PP Sbjct: 571 PKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPP 613
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 27.8 bits (61), Expect = 0.014 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 23 DGRWMFPGGRKRARETAKDCLKREIKEELPKLKLGRLRLWKEVTA-----KNKRSGRKMS 77 D R + GGR + E + ++ + L +L +K VTA K +G + Sbjct: 695 DMRGTYVGGRSQGEENDWKDMNSKLNDILKELSKKSWNGYKTVTAYFVNHKVDGNGNYVY 754 Query: 78 DAIF 81 D +F Sbjct: 755 DVVF 758
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.0 bits (148), Expect = 5e-14 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 7/127 (5%) Query: 5 LLVIEDADVHLSILRKIAVQAGFATTGVNSVDGAINVLRRRNFECITLDLNLGERSGTEV 64 +LV +D ++L + +AG+ ++ + + + + D+ + + + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 LQLLADMKSRTPVLIISGSDDQTRDV-TVRAGKILGLNVYPPFCKPVDLALLRQTLRQIA 123 L + + PVL++S + + G Y KP DL L + + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKG------AYDYLPKPFDLTELIGIIGRAL 119 Query: 124 ADTDRQR 130 A+ R+ Sbjct: 120 AEPKRRP 126
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 28.7 bits (64), Expect = 0.028 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 1/67 (1%) Query: 56 AKADESVPLGGLAITGENSLPGVKDCPIKGTKLPLIVFSHGRGGWFGQHHDLNEALADAG 115 A ADE GL + V TK PL++F G GGW + L G Sbjct: 20 AFADEFADNLGLTLLPVEPSTQVNA-ASSHTKPPLVIFLSGDGGWATLDKAVGGILQQQG 78 Query: 116 FIVAAIS 122 + V S Sbjct: 79 WPVVGWS 85
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 589 bits (1520), Expect = 0.0 Identities = 357/481 (74%), Positives = 411/481 (85%), Gaps = 4/481 (0%) Query: 1 MPAGSILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDLVITDVVMPDE 60 M +ILVADDD AIRTVLNQALSRAGY+VR+T NAATLWRW++ G+GDLV+TDVVMPDE Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 NAFDLLPRIKKMRPNLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELIAIVGRALA 120 NAFDLLPRIKK RP+LPV+VMSAQNTFMTAI+ASE+GAY+YLPKPFDL ELI I+GRALA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 EPKERAASQPDDNEFESIPLVGRSPAMQEIYRVLARLMQTDLTVMISGESGTGKELVARA 180 EPK R + DD++ + +PLVGRS AMQEIYRVLARLMQTDLT+MI+GESGTGKELVARA Sbjct: 121 EPKRRPSKLEDDSQ-DGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 181 LHDYGKRRNGPFVAVNMAAIPRDLIESELFGHERGAFTGANTRASGRFEQAEGGTLFLDE 240 LHDYGKRRNGPFVA+NMAAIPRDLIESELFGHE+GAFTGA TR++GRFEQAEGGTLFLDE Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239 Query: 241 IGDMPMEAQTRLLRVLQQGEYTTVGGRTPIKTDVRIVAASNKDLRILIQQGLFREDLFFR 300 IGDMPM+AQTRLLRVLQQGEYTTVGGRTPI++DVRIVAA+NKDL+ I QGLFREDL++R Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299 Query: 301 LNVVPLRLPPLRERIEDLPDLVRHFFALAEKDGLPPKKLDAAALERLKQHRWPGNVRELE 360 LNVVPLRLPPLR+R ED+PDLVRHF AEK+GL K+ D ALE +K H WPGNVRELE Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 361 NLARRLAALYPQDVITASVIDGELA---PPAVTTGSSTPTSIDNLGGAVEAYLSSHFQGF 417 NL RRL ALYPQDVIT +I+ EL P + ++ + ++ AVE + +F F Sbjct: 360 NLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASF 419 Query: 418 PNGVPPPGLYHRILKEIEIPLLTAALAATRGNQIRAADLLGLNRNTLRKKIRDLDIQVYR 477 + +PP GLY R+L E+E PL+ AAL ATRGNQI+AADLLGLNRNTLRKKIR+L + VYR Sbjct: 420 GDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYR 479 Query: 478 S 478 S Sbjct: 480 S 480
>PF06580#Sensor histidine kinase Length = 349 Score = 46.0 bits (109), Expect = 3e-07 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 25/157 (15%) Query: 555 IVRQVDDIRRMVDEFSRFARMPKPVMEGEDVA-----DTVRQAVFLMKVAHPE-IDIETE 608 I+ R M+ S R V+ V + L + + + E + Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQ 245 Query: 609 IKQDPLRAQFDRRLISQALTNIIKNATEAIEVVPEEELGKGRIDVVASREGDDVTIDVID 668 I + Q L+ + N IK+ + G+I + +++ VT++V + Sbjct: 246 INPAIMDVQVPPMLVQTLVENGIKHGIAQLP-------QGGKILLKGTKDNGTVTLEVEN 298 Query: 669 NGIGLPKVARQRLLEPYVTTRAKGTGLGLAIVGRVLE 705 G K ++ TG GL V L+ Sbjct: 299 TGSLALKNTKE------------STGTGLQNVRERLQ 323
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 423 bits (1090), Expect = e-147 Identities = 167/481 (34%), Positives = 262/481 (54%), Gaps = 35/481 (7%) Query: 2 ASDILIVDDEADIRELVAGILDDEGFTTRTARDSDSALAEIAGRRPNLVFLDIWLQGSKL 61 + IL+ DD+A IR ++ L G+ R ++ + IA +LV D+ + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD--E 60 Query: 62 DGLQLLEQIKKDHPDLPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRALE 121 + LL +IKK PDLPV+++S TA+ A ++GAYD++ KPF LI + RAL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL- 119 Query: 122 TSRLKREVRELKQLAPTASTMTGRSPSMNQLRQTIERAAKANSRILIVGPPGSGKELAAR 181 + KR +L+ + + GRS +M ++ + + R + + ++I G G+GKEL AR Sbjct: 120 -AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 182 TLHAQSPRAEGPFVVINAAAITPERMEEELFGVEQS--NGEQSRKTGALEEAHGGTLFVD 239 LH R GPFV IN AAI + +E ELFG E+ G Q+R TG E+A GGTLF+D Sbjct: 179 ALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLD 238 Query: 240 EIADMPRETQNKILRVLVDQTFQRAGGTTKVHVDVRIISSTARNLEEEIAAGRFREDLYH 299 EI DMP + Q ++LRVL + GG T + DVRI+++T ++L++ I G FREDLY+ Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYY 298 Query: 300 RLSVVPIRVPPLSERREDIPELIDYFMDQISVTTGLPKRQIGQDAMAVLQSHVWPGNVRQ 359 RL+VVP+R+PPL +R EDIP+L+ +F+ Q GL ++ Q+A+ ++++H WPGNVR+ Sbjct: 299 RLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRE 357 Query: 360 LRNNVERVMILAAGGPEVIITADMLPPDVGSMVPAMPTSNNGEHIMGLPLR--------- 410 L N V R+ L +IT +++ ++ S +P P L + Sbjct: 358 LENLVRRLTALYPQD---VITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQ 414 Query: 411 ----------------EAREVFERDYLIAQISRFSGNISRTAEFVGMERSALHRKLKALG 454 E ++A ++ GN + A+ +G+ R+ L +K++ LG Sbjct: 415 YFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELG 474 Query: 455 V 455 V Sbjct: 475 V 475
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 64.5 bits (157), Expect = 3e-13 Identities = 76/392 (19%), Positives = 143/392 (36%), Gaps = 27/392 (6%) Query: 44 LCALVVGLDGFDAQALGFVAPALSKDLHLAPGALGPVFGASLFGVMIGSLVFGALADYLG 103 LC L + L P ++ D + P + V A + IG+ V+G L+D LG Sbjct: 19 LCILSF-FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLG 77 Query: 104 RKWLVIAGVLVFALGSL-ATTQATSVSDLVMIRFVTGIGLGGVLPNTIALTGEYSPQRRR 162 K L++ G+++ GS+ + S L+M RF+ G G + + Y P+ R Sbjct: 78 IKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENR 137 Query: 163 TLLIMLMFMTVSLGSAIGGAVAARLITAYGWQVIFLIGGALPLILCPILIIWLPESLSLL 222 L+ V++G +G A+ + W + LI +I P L+ L + + + Sbjct: 138 GKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMIT-IITVPFLMKLLKKEVRI- 195 Query: 223 ALDTSKSDRVRTLLMRIDPSAMLPADARFTI----------------VEESGKGFLLPQL 266 D +LM + + ++I + + F+ P L Sbjct: 196 ---KGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGL 252 Query: 267 FTKRRLLPTLLLWIMFFMNMMDIYFLNSWLPTLTHGVGLDVQAAIAVGIAFQLGGMLGTI 326 + +L + F + + ++ H + ++ + + G I Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312 Query: 327 GLGLLIERFGFDRVLFATYVAGFLSIVTIGIAGASLPILVPAVFIAGVAVIGGQIGCNAY 386 G G+L++R G L+ + V+ A L + I V V+GG Sbjct: 313 G-GILVDRRG---PLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTV 368 Query: 387 AARIYPTYIRGTGIGWALGIGRFGSILGVTLG 418 + I + ++ G + + F S L G Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTG 400 Score = 32.2 bits (73), Expect = 0.005 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 3/154 (1%) Query: 276 LLLWIMF--FMNMMDIYFLNSWLPTLTHGVGLDVQAAIAVGIAFQLGGMLGTIGLGLLIE 333 +L+W+ F ++++ LN LP + + + V AF L +GT G L + Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 334 RFGFDRVLFATYVAGFLSIVTIGIAGASLPILVPAVFIAGVAVIGGQIGCNAYAARIYPT 393 + G R+L + V + + +L+ A FI G AR P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 394 YIRGTGIGWALGIGRFGSILGVTLGGLMLAA-HW 426 RG G I G +G +GG++ HW Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW 168
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 36.3 bits (84), Expect = 2e-04 Identities = 52/272 (19%), Positives = 86/272 (31%), Gaps = 31/272 (11%) Query: 3 YAANQSVQGARKEEGGFDGDAPTAILMEANSGSVLFEKNADELRAPSSMMKLMTAEVVFN 62 +A+ Q ++ + E G M+ SG L ADE S K++ V Sbjct: 20 HASPQPLEQIKLSESQLSGRVGMI-EMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLA 78 Query: 63 AVKEGTIKLNDEYRISENAWRRGGAPSGGSTMFAALNSKVSVSDLLHGAIIQSGNDACIA 122 V G +L + + L ++V +L AI S N A Sbjct: 79 RVDAGDEQLERKIHYRQQD-----LVDYSPVSEKHLADGMTVGELCAAAITMSDNSAANL 133 Query: 123 LAEGMAGNEKIFAADYMTKRARELGLTKS------TFANSNGLPDPGNKMTVRELAMLAR 176 L + G + T R++G + T N D + T +A R Sbjct: 134 LLATVGGPAGL------TAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLR 187 Query: 177 HIILDFPEFYKIFGEKE----FTWNKIRQQNRNPLLNAMEGAD---GLKTGFTKEGGYGM 229 ++ + + W + PL+ ++ A KTG + G G+ Sbjct: 188 KLLTS-----QRLSARSQRQLLQWMV-DDRVAGPLIRSVLPAGWFIADKTGAGERGARGI 241 Query: 230 VGSAVQNGTRLIVVVNGLEDPEDRATEAKKML 261 V N +VV L D E + + Sbjct: 242 VALLGPNNKAERIVVIYLRDTPASMAERNQQI 273
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 596 bits (1537), Expect = 0.0 Identities = 270/1038 (26%), Positives = 471/1038 (45%), Gaps = 46/1038 (4%) Query: 39 ISAWSIRKPIPSLVLFGVLIVLGAVSLKTLPITQMPNIDIPIVTVTIAQTGAAPSELETQ 98 ++ + IR+PI + VL +L++ GA+++ LP+ Q P I P V+V+ GA ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 99 VTKNVENAVTGVVGAKHVTS-SISDGVSVTTIEFQLGTPADRAVNDVRNAMANIRSELPQ 157 VT+ +E + G+ +++S S S G T+ FQ GT D A V+N + LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 158 SIEEPSIQRVEVGGMAIVTYAVSF--PAWTAEQVSWFVDDVITGALQGVRGVAQVKRAGG 215 +++ I + ++ P T + +S +V + L + GV V + G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDV-QLFG 179 Query: 216 ADREIRVSLQPDRLIALGITAADVNAQLRATNVDLSGGR------GEVGAGEQTIRMLAG 269 A +R+ L D L +T DV QL+ N ++ G+ +I Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 270 AATIDGLANTAI-VLPGGRRTALKEIATVIDGAADARSFARLDGRPVVTFGVFRAKGFSD 328 + + V G LK++A V G + AR++G+P G+ A G + Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 329 VAVAEAVGKRLELLAKEHP-DLSVSEIDSTVRYTKSDYRATMQTLTEGAILAVVVVLIFL 387 + A+A+ +L L P + V T + + ++TL E +L +V+ +FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 388 RDLRATAISVLAIPLSILPTFWVMDIIGFSLNAVSLLAITLVTGILVDDAIVEIENIVRH 447 +++RAT I +A+P+ +L TF ++ G+S+N +++ + L G+LVDDAIV +EN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 448 IRMGKSAYR-ASLQAADEIGLAVVATTMTIVAMFMPVSLMDGIAGQYFKQFGLTVAIAVT 506 + K + A+ ++ +I A+V M + A+F+P++ G G ++QF +T+ A+ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 507 FSLLVARLITPLLAAYFLRA-PQRHSEGHG-----------VLMRHYLRMLEWSLRHRFV 554 S+LVA ++TP L A L+ H E G + HY + L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 555 TLAFAGLVFLGSLMVAGALPLGFLPTDDLSRSVLLIELPPGSTIADTVAATDRITALLKK 614 L L+ G +++ LP FLP +D + +I+LP G+T T D++T K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 615 --RPEVRSVYAVGGTAGAHGLSVTAGDVRKATIIVDLVARSNRSHGQKAFEHDMRAALGA 672 + V SV+ V G + + G + AG + R+ + +A H + LG Sbjct: 600 NEKANVESVFTVNGFSFS-GQAQNAGMA--FVSLKPWEERNGDENSAEAVIHRAKMELGK 656 Query: 673 IPDLRY---------SFGNGGGGREFTLILSGRDGAVVEQAAFAVERDARQNVSVLANVV 723 I D G G + +G + QA + A Q+ + L +V Sbjct: 657 IRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 724 STVALARPEIRILPRLEEAADLGISGTQIAEVARIATIGDVSARLAKFSAVDRQVPIRVQ 783 + ++ E+A LG+S + I + A G R + VQ Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDR---GRVKKLYVQ 773 Query: 784 LDERARGDLSTLDMLRIKARNGT-VPLATVAEIGFGEGPMTIERYDGRRRVAIEADLVGS 842 D + R +D L +++ NG VP + + G +ERY+G + I+ + Sbjct: 774 ADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPG 833 Query: 843 TPLGEAIAQVMALPSARNLPAGVTIARFGDSEIMDDVFSSFSFAIAAGVLMVLAVLVLLF 902 T G+A+A + L A LPAG+ G S + +A ++V L L+ Sbjct: 834 TSSGDAMALMENL--ASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALY 891 Query: 903 ADAMHPITIIFSMPLSIGGALLALLLAGHAINLSAIIGFLMLMGIVTKNAILLVDFAI-T 961 P++++ +PL I G LLA L ++ ++G L +G+ KNAIL+V+FA Sbjct: 892 ESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDL 951 Query: 962 EVASGVERTTALLEAGRKRAQPVIMTTAAMTAGMVPSALGLGDGGAFRSPMAVALIGGLL 1021 G A L A R R +P++MT+ A G++P A+ G G ++ + + ++GG++ Sbjct: 952 MEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMV 1011 Query: 1022 ASTFLSLVFVPAAFTIMD 1039 ++T L++ FVP F ++ Sbjct: 1012 SATLLAIFFVPVFFVVIR 1029 Score = 67.9 bits (166), Expect = 1e-13 Identities = 69/514 (13%), Positives = 161/514 (31%), Gaps = 27/514 (5%) Query: 33 TEMALNISAWSIRKPIPSLVLFGVLIVLGAVSLKTLPITQMPNIDIPIVT--------VT 84 N + L+++ +++ V LP + +P D + T Sbjct: 523 VNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGAT 582 Query: 85 IAQTGAAPSELETQVTKNVENAVTGVVGAKHVT-SSISDGVSVTTIEFQLGTPADRAVND 143 +T ++ KN + V V + S + + + + + N Sbjct: 583 QERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENS 642 Query: 144 VRNAMANIRSELPQ----SIEEPSIQRVEVGGMAIV--TYAVSFPAWTAEQVSWFVDDVI 197 + + EL + + ++ + G A + + ++ + ++ Sbjct: 643 AEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLL 702 Query: 198 TGALQGVRGVAQVKRAGGADR-EIRVSLQPDRLIALGITAADVNAQLRATNVDLSGGRGE 256 A Q + V+ G D + ++ + ++ ALG++ +D+N + Sbjct: 703 GMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFI 762 Query: 257 VGAGEQTIRMLAGAA---TIDGLANTAIVLPGGRRTALKEIATVIDGAADARSFARLDGR 313 + + + A A + + + G T + R +G Sbjct: 763 DRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYG-SPRLERYNGL 821 Query: 314 PVVTFGVFRAKGFSDVAVAEAVGKRLELLAKEHPDLSVSEIDSTVRYTKSDYRATMQTLT 373 P + A G S + E LA + P + + L Sbjct: 822 PSMEIQGEAAPGTSSGDAMALM----ENLASKLPAGIGYDWTGMSYQERLSGN-QAPALV 876 Query: 374 EGAILAVVVVLIFL-RDLRATAISVLAIPLSILPTFWVMDIIGFSLNAVSLLAITLVTGI 432 + + V + L L +L +PL I+ + + ++ + G+ Sbjct: 877 AISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGL 936 Query: 433 LVDDAIVEIENIV-RHIRMGKSAYRASLQAADEIGLAVVATTMTIVAMFMPVSLMDGIAG 491 +AI+ +E + GK A+L A ++ T++ + +P+++ +G Sbjct: 937 SAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGS 996 Query: 492 QYFKQFGLTVAIAVTFSLLVARLITPLLAAYFLR 525 G+ V + + L+A P+ R Sbjct: 997 GAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.4 bits (110), Expect = 1e-07 Identities = 19/139 (13%), Positives = 41/139 (29%) Query: 49 AVTGSLVAREENVVGAEVDGLRIVELLADVGDRVEAGQVLARLDGTMLRTQLAQNTAMIA 108 G L + ++ + E++ G+ V G VL +L + + + Sbjct: 85 TANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLL 144 Query: 109 IAQASVAQMQASMAEMQANEAEAADALNRTLTLNSTGTISPAQLLARETQAKVAAAKSTA 168 A+ + Q ++ N+ + N + + Q + Sbjct: 145 QARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQ 204 Query: 169 AAENLRMAKAEEAFAEAQR 187 NL +AE A+ Sbjct: 205 KELNLDKKRAERLTVLARI 223 Score = 45.2 bits (107), Expect = 3e-07 Identities = 40/310 (12%), Positives = 96/310 (30%), Gaps = 46/310 (14%) Query: 34 TTLARAERQSITETLAVTGSLVAREENV-VGAEVDGLRIVELLADVGDR------VEAGQ 86 A A+ +L R + + E++ L ++L + + V Sbjct: 129 ALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLT 188 Query: 87 VLARLDGTMLRTQLAQNTAMIAIAQASVAQMQASMAEMQANEAEAADALNRTLTLNSTGT 146 L + + + Q Q + +A + A + + L+ +L Sbjct: 189 SLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQA 248 Query: 147 ISPAQLLARE------------TQAKVAAAKSTAA-----------------AENLRMAK 177 I+ +L +E ++++ +S + LR Sbjct: 249 IAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTT 308 Query: 178 AEEAFAEAQRGEIELKIARTELKAPTAGIISHRAAR-LGAVTGTAGEPLFRLI-RNGQIE 235 + + E + + ++AP + + G V T E L ++ + +E Sbjct: 309 DNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVV-TTAETLMVIVPEDDTLE 367 Query: 236 FDAEVPETVLPQIEPAQDVEVWLPGVSQS----IRGRVRLVDPTVDKASRLG---RVAVA 288 A V + I Q+ + + + + G+V+ ++ + RLG V ++ Sbjct: 368 VTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIIS 427 Query: 289 LSPHAAMRAG 298 + + Sbjct: 428 IEENCLSTGN 437
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 39.8 bits (93), Expect = 6e-05 Identities = 65/327 (19%), Positives = 112/327 (34%), Gaps = 84/327 (25%) Query: 1133 RIFLTGATGFVGSHLLSALIQETDAQIVCHVRAADRQSGEARLRQALDKRKLSVSGDEHR 1192 + +TGA GF+G H+ L++ V D L+ VS + R Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGH-----QVVGID----------NLNDYY-DVSLKQAR 45 Query: 1193 IEVLTGNLGHPALGLDERGIRIVRD-----ECEAIYHCGANV---DFLRHYAALKPANVD 1244 +E+L G +D + D E ++ + L + A +N+ Sbjct: 46 LELL-AQPGFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLT 104 Query: 1245 SVLTLLDWTASGRPKRLHYVSTLAVIDKFQAGPVSELTDLTSWQGLTSGYSQSKWVGDTL 1304 L +L+ + + L Y S+ +V + P S D + + S Y+ +K + + Sbjct: 105 GFLNILEGCRHNKIQHLLYASSSSVYGLNRKMPFST--DDSVDHPV-SLYAATKKANELM 161 Query: 1305 VRQ-AQLRGLPLAIYRLSSVTG------------------DRANGICNETDLMWRIVRLY 1345 + L GLP R +V G ++ + N M R Sbjct: 162 AHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGK-MKR----- 215 Query: 1346 AELGAIPDLDFRLNMTPADDVARAIVRLAGS----EASWGS-------------VYHLMN 1388 DF T DD+A AI+RL + W VY++ N Sbjct: 216 ---------DF----TYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGN 262 Query: 1389 SQPVDVREVPRIFRR-LGVPIEIVPLD 1414 S PV++ + + LG+ + L Sbjct: 263 SSPVELMDYIQALEDALGIEAKKNMLP 289
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 4e-04 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Query: 107 FVEVGSKVSVGQTLMIIEAMKTMNQIPSPRAGTVTQILVEDGQPVEFGEPLVIIE 161 +V + L K I V +I+V++G+ V G+ L+ + Sbjct: 77 LGQVEIVATANGKLTHSGRSKE---IKPIENSIVKEIIVKEGESVRKGDVLLKLT 128
>PF06580#Sensor histidine kinase Length = 349 Score = 38.7 bits (90), Expect = 3e-05 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 21/102 (20%) Query: 398 LIDNAIKY-LKPGV-PGDIAIRARTKLGFAIFEITDNGRGIDPRDHQRIFDLFRRAGTQD 455 L++N IK+ + G I ++ G E+ + G + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 456 RPGQGIGLAHVRALVRRLGG---TMSVASELDQGSTFTITLP 494 G GL +VR ++ L G + ++ + + +P Sbjct: 310 --STGTGLQNVRERLQMLYGTEAQIKLSEK-QGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.8 bits (124), Expect = 1e-10 Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 13/126 (10%) Query: 6 TIIMIEDDEGHARLIERNIRRSGVNNEIMPFTNGTDAVKYLLGTDGTGLDHKGRALLILL 65 TI++ +DD ++ + + R+G ++ +N +++ DG L++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGD---------LVVT 53 Query: 66 DLNLPDMTGIDILRMVKQNSFLKSAPVVILTTTDDSQEIKRCYELGCNVYITKPVNYESF 125 D+ +PD D+L +K PV++++ + + E G Y+ KP + Sbjct: 54 DVVMPDENAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111 Query: 126 ANAIRQ 131 I + Sbjct: 112 IGIIGR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 2e-20 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 3/135 (2%) Query: 5 APTLLYIDDDATLARLVERGLKRLGFTVEHAPDGAAGLERIQHGGIDVVALDQYMPGLDG 64 T+L DDDA + ++ + L R G+ V + A I G D+V D MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 65 LETLERIMALPEAPPVVFVTASQDSKIAVTALKAGAADYLVKDLQGEFVPLLQVAAEGAL 124 + L RI PV+ ++A A+ A + GA DYL K + L AL Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD---LTELIGIIGRAL 119 Query: 125 RQARLQKARDEAEAE 139 + + + ++ E +++ Sbjct: 120 AEPKRRPSKLEDDSQ 134
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.5 bits (76), Expect = 0.001 Identities = 43/232 (18%), Positives = 66/232 (28%), Gaps = 15/232 (6%) Query: 79 PLAPPPGTAVPPTNAPVAVAPPPGQPGAAPPAGGQRQPPRGAPQNAAV-PPNGAVP---- 133 P V TN P A P+ A V PP A P Sbjct: 983 PEVEKRNQTVDTTNIT-----TPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT 1037 Query: 134 QTPATLQPGDEVVTEPPAQKIVNKKASFSGLDKITGRIINFDEDIGETVQFGALRVKTDA 193 +T A + E Q A + K + + E Q G+ +T Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 194 CYTR-PATEAANTDAFVQVDEITLQGEVKRIFSGWMFAASPGLHGVEHPIYDIWLVDCKE 252 T+ AT A V+ ++ +V S + E + V+ KE Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 253 PQTTVVSTAPDQKPAAQQPAQKRPP----QQRQAAPRPQAPPQQYQTQQMPP 300 PQ+ +TA ++PA + + P P+ P Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209 Score = 28.9 bits (64), Expect = 0.032 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 6/60 (10%) Query: 251 KEPQTTVVSTAPDQKPAAQQPA-----QKRPPQQRQAAPRPQAPPQQYQTQQMPPPPPPP 305 KE QTT + + Q+ P Q +P+ Q + Q Q P P Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPK-QEQSETVQPQAEPARENDP 1151
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 110 bits (277), Expect = 2e-31 Identities = 78/254 (30%), Positives = 122/254 (48%), Gaps = 6/254 (2%) Query: 7 LDGRVAVVTGAAGLIGAATMRLLAARGARIVAIDRREQDLNAAIAALPASAE-PLAIAAD 65 ++G++A +TGAA IG A R LA++GA I A+D + L +++L A A A AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 66 VTDEAQVAAYVQRACDQFGTIDVFFNNAGIEGEIKSITDYPLEAFRRVLDVNVVGVFLGL 125 V D A + R + G ID+ N AG+ I E + VN GVF Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 126 KHVLPVMLQQNRGSIINTASIAGLIGSPQIAVYSASKHAVIGLTKSAAWECTGTNVRVNC 185 + V M+ + GSI+ S + +A Y++SK A + TK E N+R N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 186 ICPGLIDSRMLSAIIEGRSGAPVPIDRIVDR----VPARRLGQGSEVAAIVAFLASDDAS 241 + PG ++ M ++ +GA I ++ +P ++L + S++A V FL S A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 242 YVSGAAYTVDGGRT 255 +++ VDGG T Sbjct: 245 HITMHNLCVDGGAT 258
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 45.4 bits (107), Expect = 6e-07 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 11/90 (12%) Query: 196 EQSEKLEEAEAPPKKKPAPAARPPMREPMPAPRRMEEPPRVRAETRPAPGRMRAPAPTKG 255 E+ KL +A + P P + +P + + + + + P+ G Sbjct: 453 EELAKLRAGKASDSQTPDA---KPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTG 509 Query: 256 NSRRRNPSFQANPFVVATAAAIVIGSAMFA 285 + ANPF A A ++ + + A Sbjct: 510 ET--------ANPFFTAAALTVMATAGVAA 531
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 341 bits (877), Expect = e-113 Identities = 99/422 (23%), Positives = 176/422 (41%), Gaps = 2/422 (0%) Query: 242 LRLGLRVLLVAAVLGGGWLTLVPLAGAIVVPGNLVVQSNVKAIQHPTGGIIAEIKVDNGK 301 RL ++ V+ L + G L K I+ I+ EI V G+ Sbjct: 57 PRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGE 116 Query: 302 RVTAGDLLVRLDATQSQAQLQAITKQLNEQRAKIARLSAERDGLDQPEYP-TSLTSRPDD 360 V GD+L++L A ++A L + R + R ++ + P L P Sbjct: 117 SVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYF 176 Query: 361 AHVRA-VIASENALFKARATTRKSQKELLQGRIVQLNNEISGMESQLDSKNKQIELIKGE 419 +V + +L K + +T ++QK + + + E + ++++ + K Sbjct: 177 QNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSR 236 Query: 420 LAGVQELYDKRLVPLTRLTTLQREAARIDGERGQLVSSVAETRSKISEAELQTVKIDQDF 479 L L K+ + + + + E S + + S+I A+ + + Q F Sbjct: 237 LDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLF 296 Query: 480 RSEVVKDLGDAQAKEGDLVEKGVAARDQLDRIEMRAPNSGTIHQLAVHTIGGVIKPGETI 539 ++E++ L G L + ++ +RAP S + QL VHT GGV+ ET+ Sbjct: 297 KNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETL 356 Query: 540 MELVPDSDELQVEAHVQPKDIDHVHTGQNAMVRFNAFNQRTTPQLSGQVSFVAPDITNDP 599 M +VP+ D L+V A VQ KDI ++ GQNA+++ AF L G+V + D D Sbjct: 357 MVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQ 416 Query: 600 RSGSTFYTVRITLSEEERQRLGGVNLMPGMQAEVYVQTGSRTMLSYLMKPITDQWRRAFV 659 R G F + + L GM ++TG R+++SYL+ P+ + + Sbjct: 417 RLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESLR 476 Query: 660 EQ 661 E+ Sbjct: 477 ER 478
>cloacin#Cloacin signature. Length = 551 Score = 32.8 bits (74), Expect = 0.008 Identities = 18/73 (24%), Positives = 25/73 (34%) Query: 1012 ANGTGGTAAAGTTNAGGAAAGAAGAAGGTTANGGAAAGGTSNAGGTANNGGGTANNGGTS 1071 A+ T G G T G + G+ + N G+ G + G NG + Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSG 72 Query: 1072 TGGQTANNGSNNA 1084 G T N S A Sbjct: 73 GGSGTGGNLSAVA 85 Score = 30.8 bits (69), Expect = 0.037 Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 8/101 (7%) Query: 435 MLAAAGQGFAADAMDVSGNNIAIGGATYVGSATTVSTATSVHGLAQGTIPVTATPNLANG 494 M G+G A SGN GG T +G A+ G + P Sbjct: 1 MSGGDGRGHNTGAHSTSGN--INGGPTGLGVG---GGASDGSGWSSENNPWGGGSGSGIH 55 Query: 495 TGGSSTTPPSTGGGGAGGGTGTGGMHT---TPVNFDPAALA 532 GG S G G +GGG+GTGG + PV F AL+ Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALS 96
>cloacin#Cloacin signature. Length = 551 Score = 51.3 bits (122), Expect = 9e-09 Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 10/86 (11%) Query: 511 MAGGGGAA--GGGTASGGNAGGGTTGGGTAGGGATDGGNA------GGNAGGGNAGGGNA 562 M+GG G G ++ GN GG TG G GG + G + GG +G G GG + Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 563 GGGNAGGGANGGG--TTGGNNQTTTT 586 G GN GG N GG TGGN Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 45.9 bits (108), Expect = 4e-07 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 507 GGGGMAGG---GGAAGGGTASGGNAGGG-TTGGGTAGGGATDGGNAGGNAGGGNAGGGNA 562 G G GG G G G + G G ++ GGG+ G + GG +G GN GG Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 563 GGGNAGGGANG 573 GG +G G N Sbjct: 71 SGGGSGTGGNL 81 Score = 44.7 bits (105), Expect = 8e-07 Identities = 36/86 (41%), Positives = 43/86 (50%), Gaps = 11/86 (12%) Query: 481 GTGAPAGANPNIANGTGGTPASTTTPGGGGMAGGGGAAGGGTASGGNAGGGTTGGGTAGG 540 G G GA+ N GG P G G GGG + G G +S N GG +G G G Sbjct: 6 GRGHNTGAHSTSGNINGG-------PTGLG-VGGGASDGSGWSSENNPWGGGSGSGIHWG 57 Query: 541 GATDGGNAGGNAGGGNAGGGNAGGGN 566 G + GN GGN GN+GGG+ GGN Sbjct: 58 GGSGHGNGGGN---GNSGGGSGTGGN 80 Score = 36.6 bits (84), Expect = 3e-04 Identities = 28/85 (32%), Positives = 31/85 (36%), Gaps = 2/85 (2%) Query: 483 GAPAGANPNIANGTGGTPASTTTPGGGGMAGGGGAAGGGTASGGNAGGGTTGGGTAGGGA 542 G P G G +S P GGG G G GG + GN GG GG +G G Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGG--SGSGIHWGGGSGHGNGGGNGNSGGGSGTGG 79 Query: 543 TDGGNAGGNAGGGNAGGGNAGGGNA 567 A A G A GG A Sbjct: 80 NLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.3 bits (78), Expect = 0.002 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 6/85 (7%) Query: 535 GGTAGGGATDGGNAGGNAGGGNAGGGNAGGGNAGGG------ANGGGTTGGNNQTTTTHH 588 GG G T + GN GG G G GG + G G GGG+ G + + H Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 589 CHSHHSHHSQDHHAAAAAANTAAAA 613 + + +S + AA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAP 87
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 41.8 bits (98), Expect = 4e-06 Identities = 15/91 (16%), Positives = 27/91 (29%) Query: 915 PQHLDAHFALGNLLYTAGKDIEAAKCYLKVLEFSPEHAETHNNIANVLLRQGHRERAIEH 974 L+ ++L Y +GK +A K + + + + G + AI Sbjct: 33 SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 92 Query: 975 YKRAIASRPDYGDAYGNLGNAYLELNRLEEA 1005 Y + L+ L EA Sbjct: 93 YSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123 Score = 39.1 bits (91), Expect = 4e-05 Identities = 17/95 (17%), Positives = 29/95 (30%) Query: 877 LSLSPNHPGILYAFAMVRQNQGMSEEAMVLLRRAIENKPQHLDAHFALGNLLYTAGKDIE 936 +S + LY+ A + G E+A + + LG G+ Sbjct: 29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88 Query: 937 AAKCYLKVLEFSPEHAETHNNIANVLLRQGHRERA 971 A Y + + A LL++G A Sbjct: 89 AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123 Score = 36.8 bits (85), Expect = 2e-04 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 6/121 (4%) Query: 150 DDADAHQTLGFALQRLGQFERAMSHHEAALAARPQFAAAAASLGDACRQ-LGRHAEAIAH 208 D + +L F + G++E A +A + LG ACRQ +G++ AI Sbjct: 34 DTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLG-ACRQAMGQYDLAIHS 92 Query: 209 YERALTLQPNAPAVLLNIGGCQQAIGQTEAAVRTYQRALVLSPHLAEAHYNLGNLHLEMN 268 Y + P + C G+ A + L L+ L L ++ Sbjct: 93 YSYGAIMDIKEPRFPFHAAECLLQKGELAEA----ESGLFLAQELIADKTEFKELSTRVS 148 Query: 269 S 269 S Sbjct: 149 S 149 Score = 34.9 bits (80), Expect = 0.001 Identities = 18/109 (16%), Positives = 34/109 (31%) Query: 944 VLEFSPEHAETHNNIANVLLRQGHRERAIEHYKRAIASRPDYGDAYGNLGNAYLELNRLE 1003 + E S + E ++A + G E A + ++ + LG + + + Sbjct: 28 LNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYD 87 Query: 1004 EAIEQNLLALKLKPERFGSYNNLGVAYQALGRFEEATAAFEKALELAPD 1052 AI + + + G EA + A EL D Sbjct: 88 LAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIAD 136 Score = 33.7 bits (77), Expect = 0.002 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 4/116 (3%) Query: 285 PDFPEAHNNLANALQSRGRHEEALAHYDEALRRRPSYAIAHRNRADTLRNMKRFDEAIAG 344 D E +LA G++E+A + + + M ++D AI Sbjct: 33 SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 92 Query: 345 YHDALALEPADTTTLNHLAGVLMIVGRLDEAEQAYRSALAINPRNIGVHLNYGVVK 400 Y ++ + H A L+ G L EAE A + I + + Sbjct: 93 YSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL----IADKTEFKELS 144 Score = 32.6 bits (74), Expect = 0.005 Identities = 18/98 (18%), Positives = 30/98 (30%) Query: 124 LGSAFTNLGDPAGAVRHLELALAADADDADAHQTLGFALQRLGQFERAMSHHEAALAARP 183 L G A + + D D+ LG Q +GQ++ A+ + Sbjct: 42 LAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDI 101 Query: 184 QFAAAAASLGDACRQLGRHAEAIAHYERALTLQPNAPA 221 + + Q G AEA + A L + Sbjct: 102 KEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTE 139 Score = 32.6 bits (74), Expect = 0.006 Identities = 12/80 (15%), Positives = 28/80 (35%) Query: 983 PDYGDAYGNLGNAYLELNRLEEAIEQNLLALKLKPERFGSYNNLGVAYQALGRFEEATAA 1042 D + +L + + E+A + L + LG QA+G+++ A + Sbjct: 33 SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 92 Query: 1043 FEKALELAPDDAPIHLNLAN 1062 + + + + A Sbjct: 93 YSYGAIMDIKEPRFPFHAAE 112 Score = 31.1 bits (70), Expect = 0.016 Identities = 18/110 (16%), Positives = 32/110 (29%) Query: 242 TYQRALVLSPHLAEAHYNLGNLHLEMNSWPIAVFHYERAIAERPDFPEAHNNLANALQSR 301 T +S E Y+L + + A ++ L Q+ Sbjct: 24 TIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAM 83 Query: 302 GRHEEALAHYDEALRRRPSYAIAHRNRADTLRNMKRFDEAIAGYHDALAL 351 G+++ A+ Y + A+ L EA +G A L Sbjct: 84 GQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 31.1 bits (70), Expect = 0.020 Identities = 14/89 (15%), Positives = 23/89 (25%) Query: 796 GDNNDAEAIFRLILAGQPRQFDALVGLGMICSGSSRLDEAKDCFQRAVAVNAKSAEAHGS 855 G DA +F+ + +GLG + D A + ++ K Sbjct: 50 GKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFH 109 Query: 856 IGAVEASAGRYDAAVGHYETALSLSPNHP 884 G A A L + Sbjct: 110 AAECLLQKGELAEAESGLFLAQELIADKT 138 Score = 30.7 bits (69), Expect = 0.021 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 3/92 (3%) Query: 829 SSRLDEAKDCFQRAVAVNAKSAEAHGSIGAVEASAGRYDAAVGHYETALSLSPNHPGILY 888 S + ++A FQ ++ + +GA + G+YD A+ Y + P + Sbjct: 49 SGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPF 108 Query: 889 AFA---MVRQNQGMSEEAMVLLRRAIENKPQH 917 A + + +E + L + I +K + Sbjct: 109 HAAECLLQKGELAEAESGLFLAQELIADKTEF 140 Score = 30.7 bits (69), Expect = 0.024 Identities = 15/92 (16%), Positives = 25/92 (27%) Query: 862 SAGRYDAAVGHYETALSLSPNHPGILYAFAMVRQNQGMSEEAMVLLRRAIENKPQHLDAH 921 +G+Y+ A ++ L RQ G + A+ + Sbjct: 48 QSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFP 107 Query: 922 FALGNLLYTAGKDIEAAKCYLKVLEFSPEHAE 953 F L G+ EA E + E Sbjct: 108 FHAAECLLQKGELAEAESGLFLAQELIADKTE 139
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 27.2 bits (60), Expect = 0.014 Identities = 9/30 (30%), Positives = 14/30 (46%) Query: 1 MRLDRIGMAFAASILAGAATSPAFAQSPYD 30 M+L +A ++L G A+S Q D Sbjct: 1 MKLRLSALALGTTLLVGCASSGTDQQGRSD 30
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 169 bits (429), Expect = 1e-56 Identities = 60/161 (37%), Positives = 104/161 (64%), Gaps = 5/161 (3%) Query: 4 IALYPGSFDPVTNGHLDVVRQAVHLCDRLIVAVGVHHGKKPLFSTEERLAMVHEVLEPVA 63 A+YPGSFDP+T GHLD++ + L D++ VAV + K+P+FS +ERL + + + + Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 AAAGCGFEASTYDDLTVTAAQKAGAIMMIRGLRDGTDFDYEMQLAGMNQTMVPGIQTVFV 123 + +++ LTV A++ A ++RGLR +DF+ E+Q+A N+T+ ++TVF+ Sbjct: 62 -----NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFL 116 Query: 124 PASVAVRPIAATLVRQIAAMGGDVSHFVPAAVAASLKAKFN 164 S ++++LV+++A GG+V HFVP+ VAA+L +F+ Sbjct: 117 TTSTEYSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQFH 157
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 27.9 bits (62), Expect = 0.034 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 21/111 (18%) Query: 3 YTLIIFDLDGTLADSFPWFRLHVNAVAARYGFRQVKDEDVERLRHASTREILDFLAVPSW 62 T ++ + + PW + + +A FR + + E+ R + R +L Sbjct: 212 STRVLMGMSDAVRTFGPW--MLLALLAGFMAFRVMLRQ--EKRRVSFHRRLL-------- 259 Query: 63 KLPFI---------ARHMRRLKTAHAASIPLFAGVGPMLDTLAAHGHQLAL 104 LP I AR+ R L +A+++PL + D ++ + L Sbjct: 260 HLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMSNDYARHRL 310
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 27.9 bits (62), Expect = 0.049 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Query: 131 RRAAALEVSEGVVSSYVHGAVIEGAGKLGVIVALESPGKTD--ELAALGRQLAMHVAAAN 188 R+A L G+V V + ++L + +LA L RQLA VAA+ Sbjct: 26 RQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKIRLSTSDLALLTRQLATLVAASM 85 Query: 189 P--QAIDAAGLDPEVVKREKDVLAD 211 P +A+DA E ++A Sbjct: 86 PLEEALDAVAKQSE-KPHLSQLMAA 109
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 54.6 bits (131), Expect = 3e-10 Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 28/184 (15%) Query: 63 AGRQTSTGSGFLVSADGLAITNYHVVSDAALEPKTYRLEYTGADGTQGG------VTLLA 116 A T SG +V +TN HVV +P + + + + Sbjct: 97 APTGTFIASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITK 155 Query: 117 VDLPNDLALVRVDKHD--------APFFTFDKAALEGSLPKGERLYSLGNPLDLGFTIIE 168 DLA+V+ ++ T A + + G P D + Sbjct: 156 YSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNA---ETQVNQNITVTGYPGDKPVATM- 211 Query: 169 GTYNGLVEHSYNDHIHFTGALNPGMSGGPAVNAQGQVVGV---------NVATRRGGQLI 219 G + + + + + + G SG P N + +V+G+ N A + Sbjct: 212 WESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVR 271 Query: 220 SFLV 223 +FL Sbjct: 272 NFLK 275
>cloacin#Cloacin signature. Length = 551 Score = 34.7 bits (79), Expect = 0.001 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 535 GAGAGPGAGLGAGAGPGGHGPVPNSTQSGVAGTPPTLPGRPGPVAPAANALPMPGQGAPA 594 G+G+G G G+G G GG N G +GT L PVA AL PG G A Sbjct: 49 GSGSGIHWGGGSGHGNGGG----NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Query: 595 IPPTGN 600 + + Sbjct: 105 VSISAG 110
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 53.8 bits (129), Expect = 1e-10 Identities = 47/240 (19%), Positives = 79/240 (32%), Gaps = 48/240 (20%) Query: 1 MKKLLLT-TTALVVLASPALAADLAARPYTKAPPPVMAAIYDWSGFYIGVNGGGGWTHNT 59 MKK + AL A+ A AA + +Y G G H+T Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKD------------------NTWYTGAKLGWSQYHDT 42 Query: 60 WDVVGGGREGSHDSSGGTIGGQVGYRWQMGQFVFGVEAQGNW---ADFAGDNQSALFGTR 116 + G + G GG Y+ G E +W + G ++ + + Sbjct: 43 GFINNNGPTHENQLGAGAFGG---YQVNPY---VGFEMGYDWLGRMPYKGSVENGAYKAQ 96 Query: 117 NRTKTDAFGLFTGQVGYAFNNVL-VYAKGGAAITSNTYTITNAATGAFLGSNDNTRWGGV 175 T ++GY + L +Y + G + G N +T V Sbjct: 97 GVQ-------LTAKLGYPITDDLDIYTRLGGMVWRADTK------SNVYGKNHDTGVSPV 143 Query: 176 VGAGLEYGFAPNWSLGVEYDHLFMDRQTVSFGALGSDSIKQDADLFTARLNYRFGGPVAT 235 G+EY P + +EY + T + G + + D + + ++YRFG A Sbjct: 144 FAGGVEYAITPEIATRLEY------QWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAA 197
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 26.2 bits (57), Expect = 0.034 Identities = 16/45 (35%), Positives = 20/45 (44%) Query: 61 LACIANPYFAGVSDDPRATPYPYPNRQRIKPRPPRPNPYAPLPNP 105 LA N ++ V P P P P+PP+P P AP P P Sbjct: 556 LAANGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQP 600
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 33.8 bits (77), Expect = 5e-04 Identities = 33/161 (20%), Positives = 52/161 (32%), Gaps = 27/161 (16%) Query: 50 FYVGFNAGGGSSRDCWNLVQNANVVVNPALNREGCSGGGGAAVGGQVGYRYQMANWVFGV 109 +Y G G D +N G + G GY+ N G Sbjct: 28 WYTGAKLGWSQYHD------------TGFINNNGPTHENQLGAGAFGGYQ---VNPYVGF 72 Query: 110 EAQGDWANFKGTNRNLILPNVSDRSRTNGFGLFTGQVGYAF-DNILGYIKGGAAVVGDRY 168 E DW R +V + + T ++GY D++ Y + G V R Sbjct: 73 EMGYDW-----LGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVW--RA 125 Query: 169 DTFTTNTNVMLDRANTTRWGGTIGAGLEYGFAPNWSVGVEY 209 DT + + + + T G+EY P + +EY Sbjct: 126 DT----KSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEY 162
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 41.8 bits (98), Expect = 2e-06 Identities = 25/92 (27%), Positives = 38/92 (41%) Query: 92 IDYLTSLGFTLKQMGRLDDALAVFDKAIQLKPDDAELWKHLGGVLLALDRGAEALLSYQH 151 ++ L SL F Q G+ +DA VF L D+ + LG A+ + A+ SY + Sbjct: 36 LEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 95 Query: 152 ALSIDPAHKEAAFQSGLLLHQQQRDAEAVEAF 183 +D F + L Q+ AEA Sbjct: 96 GAIMDIKEPRFPFHAAECLLQKGELAEAESGL 127
>PF03309#Bvg accessory factor Length = 271 Score = 31.3 bits (71), Expect = 0.003 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 83 IVLGGPVDPDLSIMYGMPVTVAGADRLIQAAALARRYPNARIVFTGGSA 131 +++ V + ++ P V GADR++ A +Y A IV GS+ Sbjct: 88 VLIEPGVRTGIPLLVDNPKEV-GADRIVNCLAAYHKYGTAAIVVDFGSS 135
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 26.9 bits (59), Expect = 0.030 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 9/100 (9%) Query: 1 MPAERQTQPTWTEERL-----RALKQHFEAGLTCREIAAELGVSRNAV----IGKISRLA 51 M + + + T + + R Q + + EIA GV+R A+ K + Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 52 LTRDNGGDTRRVVRAENARDGARRPVPKLRRRILRAVSND 91 + + E P+ LR ++ + + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLEST 100
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 56.2 bits (135), Expect = 3e-11 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 12/187 (6%) Query: 1 MGRELARQLVAEGCNVAMCDVSAEAMAETRRLCEAETLPQGLRVTTHVADVSIEAQLQRF 60 +G +AR L ++G ++A D + E + + + ADV A + Sbjct: 20 IGEAVARTLASQGAHIAAVDYNPEKL----EKVVSSLKAEARHAEAFPADVRDSAAIDEI 75 Query: 61 RDELAEQQATDKIHLLFNNAGIGGGGSLFTNSREQWERTFNICWGGVYLGVRTFLPMLLK 120 + + I +L N AG+ G + + S E+WE TF++ GV+ R+ ++ Sbjct: 76 TARIERE--MGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYMMD 133 Query: 121 AAEGHIVNTSSVNGFWASVGMGVSHTAYSAAKFAVKGFTEALINDLRLNAPHIKCSVVMP 180 G IV S M AY+++K A FT+ L L L +I+C++V P Sbjct: 134 RRSGSIVTVGSNPAGVPRTSMA----AYASSKAAAVMFTKCL--GLELAEYNIRCNIVSP 187 Query: 181 GHIGTSI 187 G T + Sbjct: 188 GSTETDM 194
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.016 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 37 LVLLGPSGCGKSTILKSIAG 56 +VL G G GKST++ ++ G Sbjct: 599 VVLEGTGGIGKSTLINTLVG 618
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 51.4 bits (123), Expect = 7e-12 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 7/87 (8%) Query: 11 RDFGGPAVSTLDK-------VTVDLMVVLGTCSMPIHQVLRLSRGAIIELDATEADDVKV 63 + GG VS + + V L V LG M I ++LRL++G+++ LD + + + Sbjct: 40 QQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99 Query: 64 LANNLPIANGVVLVDRNRIAVEVKEML 90 L N IA G V+V ++ V + +++ Sbjct: 100 LINGYLIAQGEVVVVADKYGVRITDII 126
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 31.5 bits (71), Expect = 0.005 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 6/73 (8%) Query: 96 ADFIRVQIAMTGRAVS--CARGEATDVTDQQIAVAPAGVPWQMACQGGHRRLTLRLEPQA 153 ADF + M + CA TD Q+ APA V A G T Sbjct: 179 ADFSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCE----N 234 Query: 154 LRQRLAALVGVQP 166 +R+++A L+ P Sbjct: 235 IRKQIAELLQETP 247
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 43.6 bits (103), Expect = 1e-06 Identities = 26/148 (17%), Positives = 45/148 (30%), Gaps = 29/148 (19%) Query: 183 TVLVTGATGFVGTRLVAGLAASGHHVIAL---------VRDPAKARALPPPLTLITSLD- 232 LVTGA GF+G + L +GH V+ + A+ L P +D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 233 -------QIASDTRIDAIVNLAGEPIGNAAWTAAKREKILQSRLATTEAVVAL--IARLA 283 + + + + A R + + I Sbjct: 62 ADREGMTDLFASGHFERVFISPHR--------LAVRYSLENPHAYADSNLTGFLNILEGC 113 Query: 284 RKPQV--LVNGSAIGWYGLWQDQPLTES 309 R ++ L+ S+ YGL + P + Sbjct: 114 RHNKIQHLLYASSSSVYGLNRKMPFSTD 141
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.022 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 7/87 (8%) Query: 555 AEIAVQTRPIPNGVRLAHQGVEAPVYVYTEAEAAAARLMPVVTAG-----DSGKKLLCPM 609 A + + P+ RL + V + ++ V TA K + P+ Sbjct: 44 AHLELIETPVSRRPRLVAYFIMG-FLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPI 102 Query: 610 PGLVVS-IAVTEGQEVKAGETLAVIEA 635 +V I V EG+ V+ G+ L + A Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTA 129
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.2 bits (172), Expect = 1e-14 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 5/119 (4%) Query: 701 RVLVVEDNDEVGQFSTELLEDLGYVTRRVANAHDALAILETDEFAVDLVFSDVIMPGING 760 +LV +D+ + + L GY R +NA + + DLV +DV+MP N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG--DLVVTDVVMPDENA 62 Query: 761 LELAGIIRDRYPGLPVVLTSGYSHVLA--ENAHHG-FELIKKPYSVESLSRILRKAMAE 816 +L I+ P LPV++ S + + + + G ++ + KP+ + L I+ +A+AE Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 3e-05 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 13/85 (15%) Query: 394 LQRALDNLILNAIQNTPAGGEIVVAAEIHGGRLLFRVTDSGPGVDAGIRDRLFEPFVSTR 453 +Q ++N I + I P GG+I++ G + V ++G + Sbjct: 260 VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK----------- 308 Query: 454 ADGTGLGLAIVRE-IARAHQGEARL 477 + TG GL VRE + + EA++ Sbjct: 309 -ESTGTGLQNVRERLQMLYGTEAQI 332
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 473 bits (1219), Expect = e-167 Identities = 178/472 (37%), Positives = 257/472 (54%), Gaps = 39/472 (8%) Query: 2 ATILIVDDDAALRDGLAETVTDLGHRAVTAASGREAIGMLSSDT-DAVLLDLRMPGIDGI 60 ATIL+ DDDAA+R L + ++ G+ ++ +++ D V+ D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 61 ETLRRIRAGGDAPPVIVLTAYASPENTIEAMRLGAFDHLLKPIGRDALRELIER---LPP 117 + L RI+ PV+V++A + I+A GA+D+L KP L +I R P Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 118 RRRQRRDSGRVGDSGLIGTSEAMRRVQKTIGLAADADATVLIRGETGTGKELVARALHVH 177 RR + + L+G S AM+ + + + D T++I GE+GTGKELVARALH + Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183 Query: 178 SRRSTAPFVALNCAAIPQDLLESELFGHIKGSFTGAASDRSGAFRDAGAGTLFLDEIGDM 237 +R PFVA+N AAIP+DL+ESELFGH KG+FTGA + +G F A GTLFLDEIGDM Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 238 PLSMQAKILRALQERMITPVGG-KPIKVAARVVAATHRDLARQVASGAFREDLYYRLNVI 296 P+ Q ++LR LQ+ T VGG PI+ R+VAAT++DL + + G FREDLYYRLNV+ Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303 Query: 297 PIELPPLRERTQDILPLADHFLAQ-CSDGRPQPQLSDRAIDKLVHAPWPGNVRELRNAIQ 355 P+ LPPLR+R +DI L HF+ Q +G + A++ + PWPGNVREL N ++ Sbjct: 304 PLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVR 363 Query: 356 RACVLTRGALIDADDI------------------DIGAVPANDEAE-------------- 383 R L +I + I G++ + E Sbjct: 364 RLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDAL 423 Query: 384 -PATDLPAAVARLEEGMIRRALAACGGNRTEAARQLNINRQLLYTKMQRYGL 434 P+ +A +E +I AL A GN+ +AA L +NR L K++ G+ Sbjct: 424 PPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 28.4 bits (63), Expect = 0.017 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%) Query: 188 KPGPKHEHGPKPKHGPKDGPKHGPKPKHGPKHD 220 K P PKPK PK PK K + PK D Sbjct: 83 KEAPVVIEKPKPKPKPK--PKPVKKVQEQPKRD 113
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.3 bits (89), Expect = 5e-05 Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 3/161 (1%) Query: 226 LLIFAICVALFHLANAAMLPLVGQKLALQDKNLGTSLMSACIAAAQLVMVPMALLVGARA 285 +LI+ ++ F + N +L + +A D N + + A L + G + Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIA-NDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 286 DRWGHKRFFLAALLILPLRAALYTLSDDKA-WLVGVQLLDGVGAGIFGAIMPVIVADLMR 344 D+ G KR L ++I + + + L+ + + G GA F A++ V+VA + Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 345 GTGRFNVAQGAVITAQSIGAALSTALAGLVVVEAGYSAAFL 385 R A G + + ++G + A+ G++ +S L Sbjct: 134 KENR-GKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLL 173 Score = 29.1 bits (65), Expect = 0.033 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 21/159 (13%) Query: 43 WDEAAIGLVMSLATIAGIVAQTPAGAMVDATRAKRLIMIAAALIVTAASLLLPLMASFWP 102 W A L S+ T G + D KRL++ + S++ + SF+ Sbjct: 53 WVNTAFMLTFSIGTA-------VYGKLSDQLGIKRLLLFGIIINC-FGSVIGFVGHSFFS 104 Query: 103 VAISQSIAHAAGVIFAPAIAAVSLGIFGVSAFTARIGRNETFN------HAGNAVGAVIA 156 + I AG A A A+ + + V+ + + R + F G VG I Sbjct: 105 LLIMARFIQGAG---AAAFPALVMVV--VARYIPKENRGKAFGLIGSIVAMGEGVGPAIG 159 Query: 157 GAAAYALGPSAVFYLMALMSVG--SLISVLAIPARAIDH 193 G A+ + S + + + + L+ +L R H Sbjct: 160 GMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGH 198
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 68.5 bits (167), Expect = 5e-15 Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 33/166 (19%) Query: 90 SGTGSGFVWDDLGHVVTNYHVIEGATEALVSLT------------DGRSFRAALVGANPE 137 + SG V ++TN HV++ +L +G + + E Sbjct: 101 TFIASGVVVGK-DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 159 Query: 138 NDLAVLLIGVGTDRP------KPLPIGTSADLKVGQKVFAIGNPFGLS-STL--TTGIVS 188 DLA++ KP + +A+ +V Q + G P +T+ + G ++ Sbjct: 160 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKIT 219 Query: 189 ALNRNLQVTQERTLNGLIQTDAAINPGNSGGPLLDSAGRLIGVNTA 234 L +Q D + GNSG P+ + +IG++ Sbjct: 220 YLKGEA-----------MQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 124 bits (313), Expect = 7e-38 Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 6/167 (3%) Query: 1 MIEILTRADEPRVPAWFDQMFRGRAKVFHERLRWRVVVRDGREMDRYDEHERTIYLMAID 60 M+EI ++F R + F +RL W V DG E D+YD + T YL I Sbjct: 1 MLEIFDVNHTLLSETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYD-NNNTTYLFGIK 59 Query: 61 SAGQVVGSLRLLRAVGETMLDNEFRDFFSPPIVIRSAEILECTRFCVHGDQTSSKPN--- 117 V+ SLR + M+ F +F I LE +RF V + Sbjct: 60 D-NTVICSLRFIETKYPNMITGTFFPYFKEIN-IPEGNYLESSRFFVDKSRAKDILGNEY 117 Query: 118 AVSSELMIGLCEFALANGIREVIGLYTSGMTRIYRRVGWEPREIAVA 164 +SS L + + ++ G + + + M I +R GW R + Sbjct: 118 PISSMLFLSMINYSKDKGYDGIYTIVSHPMLTILKRSGWGIRVVEQG 164
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 81.8 bits (202), Expect = 6e-19 Identities = 47/306 (15%), Positives = 99/306 (32%), Gaps = 59/306 (19%) Query: 79 DTVAERDVLIVMNAEDIQSRGREARSATLKAAIALDALTHWEAGPEVTRARRGVEAARTV 138 V+E +VL + + Q + + + + + E + + Sbjct: 177 QNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLD-------KKRAERLTVLARINRYENL 229 Query: 139 LARLERKVNDTRQLYDRGIVSRVEFEAAEQERDNQAFTVATAEQDLTATLARGGADSRRL 198 + +++D L + +++ E + A +L ++ + Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKY-------VEAVNELRVYKSQLEQIESEI 282 Query: 199 AELELE-----------------NAKARLADVQRQADG-------TIVRAPVAGVIVKPP 234 + E + + + +++RAPV+ + + Sbjct: 283 LSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQ-L 341 Query: 235 TVNASGAVPQTVETGARVQRGQTLFSVA-DLSSLIVDGKVDEIDVNQIRIGQSVAISSDA 293 V+ G V V +TL + + +L V V D+ I +GQ+ I +A Sbjct: 342 KVHTEGGV---------VTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEA 392 Query: 294 FPG---LPLRGHVVGVSSEATQDSANQTAMFNVRVLID------DTKKDDIRIGMSARMT 344 FP L G V ++ +A +D FNV + I+ K + GM+ Sbjct: 393 FPYTRYGYLVGKVKNINLDAIEDQRLGLV-FNVIISIEENCLSTGNKNIPLSSGMAVTAE 451 Query: 345 IELDAR 350 I+ R Sbjct: 452 IKTGMR 457
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 26.0 bits (57), Expect = 0.038 Identities = 11/23 (47%), Positives = 16/23 (69%) Query: 1 MKKTILSLAAALFCTSALAQNAP 23 MKKT +++A AL + +AQ AP Sbjct: 1 MKKTAIAIAVALAGFATVAQAAP 23
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.7 bits (85), Expect = 1e-04 Identities = 66/344 (19%), Positives = 120/344 (34%), Gaps = 12/344 (3%) Query: 48 GLLITFGAVVLCICSPLTAWLTSRFDRRLLLAATLLVLTLGNLGSAFVPDYAGLLALRLL 107 G+L+ A++ C+P+ L+ RF RR +L +L + A P L R++ Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV 105 Query: 108 MLAVGALYTPQAAGTAALISPVETRGSTIAYVFLGWSLAAAVGLPLITFIGSHSGWRAAY 167 GA A A I+ + R ++ + G L +G S A + Sbjct: 106 AGITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP-HAPF 163 Query: 168 LAVGAAGAISLLLLTWRLP-------SGLKGAPVALKTWTELARNRMVVLLLLIT--TLQ 218 A A ++ L + LP L+ + AR VV L+ +Q Sbjct: 164 FAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQ 223 Query: 219 MSGQFVIFTFMGPLLNRLTGADANQVGLVFAIYGACGFLGVVIATRIVDGWGAYRTSLLF 278 + GQ ++ +R DA +G+ A +G L + T V R +L+ Sbjct: 224 LVGQVPAALWVIFGEDRF-HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML 282 Query: 279 SCLLFAGIAVWTLGAGSYSLMAVAVAIWGLGFASTNSMQQVRLVAAAPPLASASVSLNTS 338 + + A + + + G ++Q + + Sbjct: 283 GMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAA 342 Query: 339 VLYIGQAIGSALGGSLFARGWLDATGYAAMGFAMLALLAILASR 382 + + +G L +++A G+A + A L LL + A R Sbjct: 343 LTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALR 386
>TYPE3OMBPROT#Type III secretion system outer membrane B protein family signature. Length = 538 Score = 28.5 bits (63), Expect = 0.039 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Query: 207 ELSADPKKIDEATRRHYAKLYARPGNMHYAFEQFAAFNQDAKDNKVFAEKKLPMPILALG 266 + S K+ +R ++ + GNM + N NKV KKLP+ L L Sbjct: 465 QFSQLNSKLSSEEKRLFSTILMNSGNM-----EIQEMNTGVPGNKVM--KKLPLSSLELS 517 Query: 267 AEKSFGDQE 275 + GD + Sbjct: 518 YSERIGDSK 526
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 49.2 bits (117), Expect = 1e-09 Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 3/172 (1%) Query: 2 PTGRPREFDTERALELATSLFWQKGYEGTSLSDLTETLGITRPSLYAAFGNKEALFRLVL 61 T + + + L++A LF Q+G TSL ++ + G+TR ++Y F +K LF + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 62 QRYEAKAGAY--RTKALKAPTALEVARQLLEGAAELHGDKANPVGCLGVHGALA-CSDEA 118 + E+ G +A L V R++L E + + + E Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 119 AMIRRDMSAHRIAGEAAIRRRLTRAKAEGDLPPNASPSDLARYLSVVIYGMA 170 A++++ + I + L LP + A + I G+ Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLM 175
>PF06580#Sensor histidine kinase Length = 349 Score = 45.2 bits (107), Expect = 3e-07 Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 22/173 (12%) Query: 289 MAQDARMITQSVTHLMACLRGTLSRLRR---PLAEELGLEAGLVALTQNYQHAARPAIRL 345 + +D + +T L +R +L LA+EL + + L + Q R Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQL-ASIQFEDRLQFEN 244 Query: 346 DLHGDLADIQGPVAVTAYRMA-QECLTNALRH-----TDASEVSLRVERRPGPDSALLIS 399 ++ + D+Q P M Q + N ++H ++ L+ + + + + Sbjct: 245 QINPAIMDVQVP------PMLVQTLVENGIKHGIAQLPQGGKILLKGTKD---NGTVTLE 295 Query: 400 IEDDGGGDATQLAQSSGFGLTGIRERIAAVGG---SLSIAPAARGLSVSATIP 449 +E+ G +S+G GL +RER+ + G + ++ ++ IP Sbjct: 296 VENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 3e-18 Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 10/182 (5%) Query: 5 TAISILLVDDHPVVRQGYRRVLESQDGFRVIAEADSAAAAYAAFKVHAPDVVVLDISMKG 64 T +IL+ DD +R + L + G+ V +AA + D+VV D+ M Sbjct: 2 TGATILVADDDAAIRTVLNQALS-RAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 65 ASGLEAIRNIRARDNRACILVFSMHGEAPLVKAAFAAGASGFVTKSSEPSALV----RAI 120 + + + I+ +LV S A GA ++ K + + L+ RA+ Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 121 RMVISGERALSDDVAHVLAADSLDP-MQTVL---DRLGEREIEILRQLASGLTTEQIATN 176 L DD + MQ + RL + ++ ++ SG E +A Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 177 LH 178 LH Sbjct: 180 LH 181
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.8 bits (147), Expect = 1e-13 Identities = 24/198 (12%), Positives = 61/198 (30%), Gaps = 14/198 (7%) Query: 8 TSERILEVTEDVLRRYGLAKATVVDVARALDVSHGSVYRHFPSKASLREAVAKRWLERVS 67 T + IL+V + + G++ ++ ++A+A V+ G++Y HF K+ L + + + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 68 KPLAQIAAEPGPAPAKLERWLRELFGAKHKRVCEDPEMFATYLTLAREA---------CS 118 + + A+ P + LRE+ + + + + Sbjct: 72 ELELEYQAKFPGDPLSV---LREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 119 VVKAHKQDLIAQVEGIIAEGVAQGAF-EVADPKTAAAAIFDATRSFHHPAHADEWGECTC 177 + + ++E + + + AA + Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP-QSFDL 187 Query: 178 SARVDAVLTLLLRGLQAR 195 + +LL Sbjct: 188 KKEARDYVAILLEMYLLC 205
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.009 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 14/72 (19%) Query: 195 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGAARVRDLFEQARAKAPAI 254 V+L G G GK+ L + G FFS + + +D +EQ Sbjct: 599 VVLEGTGGIGKSTLINTLVGL---DFFSDTHFDIGTG---------KDSYEQIAGI--VA 644 Query: 255 IFIDELDALGRA 266 + E+ A RA Sbjct: 645 YELSEMTAFRRA 656
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.2 bits (203), Expect = 3e-18 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 4/116 (3%) Query: 772 GTILLVEDEEGLRALNARGLRSRGYSVIEASNGIEAMEALEECNGALDLVVSDVVMPEMD 831 TIL+ +D+ +R + + L GY V SN + G DLVV+DVVMP+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPDEN 61 Query: 832 GPTLLKVMREKNPDIKIIFVSGYAE-DAFEKSLPENQQFAFLPKPFTLSQLVAAVK 886 LL +++ PD+ ++ +S K+ E + +LPKPF L++L+ + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKAS-EKGAYDYLPKPFDLTELIGIIG 116
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 319 bits (818), Expect = e-110 Identities = 102/347 (29%), Positives = 181/347 (52%), Gaps = 11/347 (3%) Query: 7 SEDKTEDPTQKRLDQALERGDVVKSQELNTWFVIAA---ATLVMSTFSGSIGTAVLVPMR 63 S +KTE PT K++ A ++G V KS+E+ + +I A + +S + + +++ Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPA 61 Query: 64 NLIANSWMIHTDGAGLLALARSLSFAVIAAIGVPIL-MVMLAAIAGNMMQHRLVWSGEPL 122 + + L+ + P+L + L AIA +++Q+ + SGE + Sbjct: 62 EQS------YLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAI 115 Query: 123 KPNFGKISPLAGAKRLFGKQAAANFAKGIFKLVLLGTVMVMILWPERLRLESLLHMDVSE 182 KP+ KI+P+ GAKR+F ++ F K I K+VLL ++ +I+ + L L + Sbjct: 116 KPDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIEC 175 Query: 183 LLGVTISLTKHLMGSVVALLALVAIGDYLFQYRQWYERQKMSVQEMKEEFKQSEGDPHVK 242 + + + + LM +++I DY F+Y Q+ + KMS E+K E+K+ EG P +K Sbjct: 176 ITPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIK 235 Query: 243 GRIRQIRQQRMKKRMMAAVPKASVIITNPTHYSVALAYERG-MSAPVCVAKGVDNIAFKI 301 + RQ Q+ + M V ++SV++ NPTH ++ + Y+RG P+ K D + Sbjct: 236 SKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTV 295 Query: 302 REIAKAHDIPIVENVPLARALYATVEIDAEIPVEHYHAVAEIISYVM 348 R+IA+ +PI++ +PLARALY +D IP E A AE++ ++ Sbjct: 296 RKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE 342
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 123 bits (311), Expect = 2e-36 Identities = 61/239 (25%), Positives = 113/239 (47%), Gaps = 2/239 (0%) Query: 11 LAAVFMLAFARIGAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLHRQAYQVDLQALSP 70 ++ R+ A++ P L E ++P R+KL A+++T + P + Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFAL 71 Query: 71 LLVMMVHEIVIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQGQQGVLIGNFL 130 L + +I+IGI LG T + +A++ AG +I QMGL F T VDP ++ + Sbjct: 72 WLAV--QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 Query: 131 TMLGVTLLFSTDSHHLVIAALSDSYKIFAPGEVIPSGDVASLATRAFAAAFKIGLQLSAP 190 ML + L + + H +I+ L D++ G + + T+A + F GL L+ P Sbjct: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 Query: 191 FLVFGLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFGLVLAAMMGTFLGYFEGVI 249 + L N+ LG+L R+ PQ+ ++ +G PL++ +G + ++ + F + Sbjct: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 59.0 bits (143), Expect = 2e-15 Identities = 21/76 (27%), Positives = 45/76 (59%) Query: 5 ETLDVARDAIWTIVLVSSPLMVVGLVVGVVVSLFQALTQIQEQTLVFVPKIIAIFVTLLL 64 + + A++ ++++S +V ++G++V LFQ +TQ+QEQTL F K++ + + L L Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62 Query: 65 ALPFMADALHSHMMRI 80 + + L S+ ++ Sbjct: 63 LSGWYGEVLLSYGRQV 78
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 46.6 bits (110), Expect = 5e-10 Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 43 ADKGGPSFSAVLKDAIGSVMETGRKSDSQAVAMAAGKA--NVMDVVTAVAETDVAVSTLV 100 + SF+ L A+ + +T + +QA G+ + DV+T + + V++ + Sbjct: 26 LPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGI 85 Query: 101 SVRDRVIQAYEDVMKMTI 118 VR++++ AY++VM M + Sbjct: 86 QVRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.9 bits (67), Expect = 0.003 Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 101 NVNPLVEMTDMRDAQRSYEANLNIIGATRRMIQRTLDI 138 VN E +++ Q+ Y AN ++ + ++I Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 55.1 bits (132), Expect = 3e-10 Identities = 47/266 (17%), Positives = 84/266 (31%), Gaps = 20/266 (7%) Query: 77 DIVVESNIVRAMPAREQLPQRPGLSAEPQAARIAPLPEPAPWPDAEPKSEPVELPEPQMP 136 V +NI + +P P + E AP+P PAP +E E + + Sbjct: 990 QTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESK 1049 Query: 137 ELPPRPARPSFIDEVRRTAPAAAERREPAAFAPEPPPLARRGEPRAEPRPEPRSEETRVE 196 + + + + A E + + +A+ G E + E VE Sbjct: 1050 TVEKNEQDAT--ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 197 PRPERLPRSEAPREPLIPRPLRPAESPQQSEAARQPEAPAKLPPLRRPMRPEPPAA---- 252 E + E + +P+ Q+ QP+A P R P Sbjct: 1108 K--EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA--------EPARENDPTVNIKE 1157 Query: 253 PPAPAPAPVAQMPAAPPPPPPAPPPSQQSAEAN----LAEMAQRLEAALRRPSADAPAAP 308 P + A P +S N + E + A +P+ ++ ++ Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 309 AEGTPLRQAARAEPAPTPPAKTSFEN 334 R++ R+ P PA TS + Sbjct: 1218 KPKNRHRRSVRSVPHNVEPATTSSND 1243 Score = 35.0 bits (80), Expect = 5e-04 Identities = 22/127 (17%), Positives = 33/127 (25%), Gaps = 6/127 (4%) Query: 114 EPAPWPDAEPKSEPVELPEPQMPELPPRPARPSF-IDEVRRTAPAAAERREPAAFAPE-- 170 P PK E E +PQ P R P+ I E + A+ +PA Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAE--PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNV 1179 Query: 171 PPPLARRGEPRAEPRPEPRSE-ETRVEPRPERLPRSEAPREPLIPRPLRPAESPQQSEAA 229 P+ E T +P S + R +R + Sbjct: 1180 EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATT 1239 Query: 230 RQPEAPA 236 + Sbjct: 1240 SSNDRST 1246
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 273 bits (699), Expect = 2e-95 Identities = 117/228 (51%), Positives = 159/228 (69%), Gaps = 2/228 (0%) Query: 7 AGSAAAQDISINLGPGNGGVTE--RAVQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLR 64 A AQ I P GG VQ + +T L+ P+IL+MMTSFTRI++V LLR Sbjct: 16 TPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLR 75 Query: 65 TAMGTATAPPNAVIIALAMFLTAFVMGPVLQKSYDDGVRPLIENQIGVEDALQRASVPLR 124 A+GT +APPN V++ LA+FLT F+M PV+ K Y D +P E +I +++AL++ + PLR Sbjct: 76 NALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLR 135 Query: 125 GFMQKNVREKDLKLFMDLSGEAPPATPDELSLRILVPAFMISELKRAFEIGFLLFLPFLI 184 FM + RE DL LF L+ P P+ + +RIL+PA++ SELK AF+IGF +F+PFLI Sbjct: 136 EFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLI 195 Query: 185 IDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 232 IDLV+ASVLM++GMMM+PP ++LPFKL+ FVLVDGW L+ GSL QS+ Sbjct: 196 IDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 44.3 bits (104), Expect = 3e-06 Identities = 31/172 (18%), Positives = 54/172 (31%), Gaps = 15/172 (8%) Query: 281 KVAAVSSDTLPGANAAAAEKPNGDKPNGEKPKQATLPEIVPPTSETIAKEMKAEAKPAPA 340 +VA S+T E +K K + E+ TS+ K+ ++E Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET--VQP 1141 Query: 341 MATPATETAAAPAMAEKAEPARPEAAKSEPPQAEAARAEPKLEAAK-----------PET 389 A PA E + E A +P + ++ E + + PE Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPEN 1201 Query: 390 MKSETTKSETAKSEAAKPDIAKAEPAKPVEKMAEKPVETTANGAATLEALRD 441 TT+ + KP + V E ++ + + AL D Sbjct: 1202 TTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRST--VALCD 1251 Score = 43.1 bits (101), Expect = 8e-06 Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 20/150 (13%) Query: 288 DTLPGANAAAAEKPNGDKPNGEKPKQATLPEIVPPTSETIAKEMKA-EAKPAPAMATPAT 346 T+ N D P+ VP +E IA+ +A PAPA + T Sbjct: 990 QTVDTTNITTPNNIQADVPS------------VPSNNEEIARVDEAPVPPPAPATPSETT 1037 Query: 347 ETAA--APAMAEKAEPARPEAAKSEPPQAEAARAEPKLEAAKPETMKSETTKSETAKSEA 404 ET A + ++ E +A ++ E A+ A +T + + SET +++ Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 405 A----KPDIAKAEPAK-PVEKMAEKPVETT 429 + K E AK EK E P T+ Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Score = 39.7 bits (92), Expect = 8e-05 Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 13/165 (7%) Query: 278 PDKKVAAVSSDTLPGANAAAAEKPNGDKPNGEKPKQATLPEIV----PPTSETIAKEMKA 333 P D P A A + E KQ + + +E+ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 334 EAKPAPAMATPATETAAAPAMAEKA------EPARPEAAKSEPPQAEAARAEPKLEA-AK 386 EAK T E A + + ++ E A E + + E + PK+ + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 387 PETMKSETTKSETAKSEAAKPDIAKAEPAKPVEKMA--EKPVETT 429 P+ +SET + + + P + EP A E+P + T Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKET 1175 Score = 39.3 bits (91), Expect = 1e-04 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 330 EMKAEAKPAPAMATPATETAAAPAMAEK-AEPARPEAAKSEPPQAEAARAEPKLEAAKPE 388 E + + + TP A P++ E AR + A PP A A +E A+ Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPP-APATPSETTETVAENS 1044 Query: 389 TMKSETTKSETAKSEAAKPDIA-KAEPAKPVEKMAEKPVETTANGAATLEALR 440 +S+T + + A+ AK K + E +G+ T E Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 280 bits (718), Expect = 3e-94 Identities = 80/322 (24%), Positives = 157/322 (48%), Gaps = 15/322 (4%) Query: 66 VLSQEEIDNLLGF-TAGEVNLDDHSGIRAIIDSAMVSY--------ERLPMLEIVFDRLV 116 VLSQ+EID LL ++G+ +++D I + + E++ L ++ + Sbjct: 4 VLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETFA 63 Query: 117 RLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLATVDSTL 176 RL TTSL V V + + + + +++ SIP P+ L+V + + + VD ++ Sbjct: 64 RLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSI 123 Query: 177 IYSIIDVLLGGRRGNTQLRVEGRPYTTIETNLVKRLIEVVLSDAEQAFRPLSPVRFTIDR 236 +SIID L GG +++ R T IE ++++ +I +L++ +++ + +R + + Sbjct: 124 TFSIIDRLFGGTGQAAKVQ---RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQ 180 Query: 237 LETNPRFAAISRPANAAILVKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMGEKFGR 296 +ETNP+FA I P+ +LV L + + G + +PY TIEPI L F R Sbjct: 181 IETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240 Query: 297 DPV--WEGHFATEIAQAEVAVDAVLYEADVPLKQLMRLKVGDTLPL-DIRPDALVAVRCG 353 + G +++ ++ V A + + ++ ++ L+VGD + L D + G Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300 Query: 354 STMLTEGRMGRVGDRVAIRVTK 375 + + G VG ++A ++ + Sbjct: 301 NRKKFLCQPGVVGKKIAAQILE 322
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 38.8 bits (90), Expect = 1e-05 Identities = 9/48 (18%), Positives = 21/48 (43%) Query: 213 SITQGSLEQANVDVVSEMSELIAAQRAYEMNAKVISAADQMMQSTTAL 260 ++ + V++ E L Q+ Y NA+V+ A+ + + + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 32.2 bits (73), Expect = 0.002 Identities = 10/34 (29%), Positives = 20/34 (58%) Query: 4 LHTAATGMAAQELNVQVISNNIANLRTTGFKKQT 37 ++ A +G+ A + + SNNI++ G+ +QT Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 185 bits (471), Expect = 1e-60 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 10/197 (5%) Query: 68 PKPEVVSYAPNSLWRN------GSRAFFKDQRARQVGDLLTVTVSISDKANIANETQRSR 121 P P A S++++ G + F+D+R R +GD LT+ + + A+ ++ SR Sbjct: 39 PVPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASR 98 Query: 122 TNKEDSGITDFVGSKTLGATGKNILPGRILTADGTSSSDGKGTIQRSESLTTSVAAVVTQ 181 K + G D V G G + A G ++ +GKG S + + ++ V Q Sbjct: 99 DGKTNFGF-DTVPRYLQGLFGNARAD---VEASGGNTFNGKGGANASNTFSGTLTVTVDQ 154 Query: 182 VLPNGNLVVEGKQEIRVNYEIRELIVAGIVRPEDIQSDNTIDSTKIAQARISYGGRGQIT 241 VL NGNL V G+++I +N + +G+V P I NT+ ST++A ARI Y G G I Sbjct: 155 VLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYIN 214 Query: 242 DVQQPRYGQQVMDILLP 258 + Q + Q+ L P Sbjct: 215 EAQNMGWLQRFFLNLSP 231
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 76.4 bits (188), Expect = 8e-18 Identities = 79/340 (23%), Positives = 122/340 (35%), Gaps = 50/340 (14%) Query: 4 VLVTGGSGFIGTHVILQLLAAGHRVR-----ATLRTPARQSEVLAMLQRGGATDTGPLSF 58 LVTG +GFIG HV +LL AGH+V + + L +L + G F Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPG------FQF 56 Query: 59 YAADLTRDDGWAQ--AATGCDYVLHIA-------SPLPAHVPKDENELIVPAREGTLRVL 109 + DL +G A+ + V S H D N G L +L Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLT------GFLNIL 110 Query: 110 RAARDAGVKRAVVTSSFAAIGYGHVRRSHPFDETDWSELDGPAVQPYPKSKTLAERAAWH 169 R ++ + SS + G R PF D +D P V Y +K E A Sbjct: 111 EGCRHNKIQHLLYASSSSVYGLN---RKMPFSTDD--SVDHP-VSLYAATKKANELMA-- 162 Query: 170 FVAQEGGGLELATVNPVAVLGPVLGPDVSTSIAMVQALLAGRIPAV-----PRISFGLVD 224 GL + V GP PD++ +A+L G+ V + F +D Sbjct: 163 HTYSHLYGLPATGLRFFTVYGPWGRPDMALFK-FTKAMLEGKSIDVYNYGKMKRDFTYID 221 Query: 225 VRDVADLHLRAMTAPAAKGERFLAIAGPPMSLREIAELLRVRLGASGRRAPRYELPDWLA 284 D+A+ +R ++ G P + + + + + L Sbjct: 222 --DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNI---GNSSPVELMDYIQALE 276 Query: 285 RALALAVPQLRAVLPL-VGRYCETSAD--KAKRLLGWSPR 321 AL + + +LPL G ETSAD ++G++P Sbjct: 277 D--ALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPE 314
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 48.2 bits (115), Expect = 5e-09 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 15/78 (19%) Query: 1 MKIAVAGASGRAGSRITAELAGRGHQVTGI-------------ARNPDKILAHPNVTAVK 47 MK V GA+G G ++ L GHQV GI AR ++LA P K Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARL--ELLAQPGFQFHK 58 Query: 48 GDANDRAELARLWAGHDV 65 D DR + L+A Sbjct: 59 IDLADREGMTDLFASGHF 76
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 390 bits (1002), Expect = e-137 Identities = 181/372 (48%), Positives = 256/372 (68%), Gaps = 11/372 (2%) Query: 8 RLFQVACAAIVALA----SSAMSAHATSRIKDLANIEGVRQNQLIGYGLVVGLNGTGDTL 63 R+ ++ AA+V A S+ + TSRIKD+A+++ R NQLIGYGLVVGL GTGD+L Sbjct: 2 RVLRIIAAALVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSL 61 Query: 64 NNIPFTKQSLQAMLERMGVNIRGATIRTGNVAAVMVTGNLPPFATQGTRMDVTVSALGDA 123 + PFT+QS++AML+ +G+ +G N+AAVMVT NLPPFA+ G+R+DVTVS+LGDA Sbjct: 62 RSSPFTEQSMRAMLQNLGITTQGGQSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDA 121 Query: 124 KNLQGGTLLVTPLLGADGNVYAVAQGSLAISGFQAEGEAAKIVRGVPTVGRIANGAIIER 183 +L+GG L++T L GADG +YAVAQG+L ++GF A+G+AA + +GV T R+ NGAIIER Sbjct: 122 TSLRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIER 181 Query: 184 EIEFALNRLPNVRLALRNADFTTAKRIAAAINDF----LGVKTAEPIDPSTVQLSIPPEF 239 E+ N+ L LRN DF+TA R+A +N F G AEP D + + P Sbjct: 182 ELPSKFKDSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRVA 241 Query: 240 KGNVVAFLTEIEQLQVDPDLAAKIVIDERSGIIVMGRDVRVATVAVAQGNLTVTISESPQ 299 ++ + EIE L V+ D AK+VI+ER+G IV+G DVR++ VAV+ G LTV ++ESPQ Sbjct: 242 --DLTRLMAEIENLTVETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQ 299 Query: 300 VSQPNPLSQGRTVVTPRTSVGVTEDGKKFAVVKDGVSLQQLVDGLNGLGIGPRDLISILQ 359 V QP P S+G+T V P+T + ++G K A+V+ G L+ LV GLN +G+ +I+ILQ Sbjct: 300 VIQPAPFSRGQTAVQPQTDIMAMQEGSKVAIVE-GPDLRTLVAGLNSIGLKADGIIAILQ 358 Query: 360 AIKAAGAIEADI 371 IK+AGA++A++ Sbjct: 359 GIKSAGALQAEL 370
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 52.6 bits (126), Expect = 5e-10 Identities = 24/120 (20%), Positives = 37/120 (30%) Query: 92 EALSNLGLALFNRKRYEEARKCQELAVALKPNLVVALTGLGNTLMRLGRPEEAIVAHDRA 151 E L +L + +YE+A K + L GLG +G+ + AI ++ Sbjct: 37 EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 96 Query: 152 IALKPDYADAYCNRGMALLPLNRNAEANQNFDRALSLNPRHMEAMFGKGLASIILRHFDD 211 + + LL AEA A L E S +L Sbjct: 97 AIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLEAIKL 156 Score = 42.6 bits (100), Expect = 1e-06 Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 3/114 (2%) Query: 48 QILALLPEHFDALHLLGVVALDSGQLDMAEQALTKAVEAEPRHAEALSNLGLALFNRKRY 107 + + + + L+ L SG+ + A + + + LG +Y Sbjct: 27 MLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQY 86 Query: 108 EEARKCQELAVALKPNLVVALTGLGNTLMRLGRPEEAIVAHDRAIAL---KPDY 158 + A + L++ G EA A L K ++ Sbjct: 87 DLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140 Score = 33.7 bits (77), Expect = 0.001 Identities = 18/97 (18%), Positives = 33/97 (34%) Query: 24 DELLPRAVAAYRAGRPAEAQAICGQILALLPEHFDALHLLGVVALDSGQLDMAEQALTKA 83 ++L A Y++G+ +A + + L LG GQ D+A + + Sbjct: 37 EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 96 Query: 84 VEAEPRHAEALSNLGLALFNRKRYEEARKCQELAVAL 120 + + + L + EA LA L Sbjct: 97 AIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 29.5 bits (66), Expect = 0.027 Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 7/103 (6%) Query: 153 ALKPDYADAYCNRGMALLPLNRNAEANQNFDRALSLNPRHMEAMFGKGLASIILRHFDDA 212 + D + + + +A++ F L+ G G + +D A Sbjct: 30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 89 Query: 213 LAAFDAALAIRPR-------AAQVLAQRGRLHQQAGRFDPAMA 248 + ++ + + AA+ L Q+G L + A Sbjct: 90 IHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQE 132
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 48.4 bits (115), Expect = 1e-08 Identities = 22/109 (20%), Positives = 37/109 (33%) Query: 80 LAKAVEVDPRHAEALSNLGLALFSRKRFEEARKCQERAVTLKPNLVVAQTGLGNTLMRLG 139 +A E+ E L +L + ++E+A K + L GLG +G Sbjct: 25 IAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMG 84 Query: 140 RPDEAVAAHDRAIALKPDYADAYCNRGMALLTLNRNAEANQSFDRALSL 188 + D A+ ++ + + LL AEA A L Sbjct: 85 QYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 46.1 bits (109), Expect = 8e-08 Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 3/114 (2%) Query: 48 QILALLPDHVDALHLLGVTALDGGQLDLAEQALAKAVEVDPRHAEALSNLGLALFSRKRF 107 + + D ++ L+ L G+ + A + +D + LG + ++ Sbjct: 27 MLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQY 86 Query: 108 EEARKCQERAVTLKPNLVVAQTGLGNTLMRLGRPDEAVAAHDRAIAL---KPDY 158 + A + L++ G EA + A L K ++ Sbjct: 87 DLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 44.9 bits (106), Expect = 2e-07 Identities = 16/97 (16%), Positives = 26/97 (26%) Query: 96 NLGLVLSSLKRYEEARAAQERAIALKPNFATALTGLGNTLMNMRLFAQAIEAHDRAIALK 155 +L +YE+A + L + GLG M + AI ++ + Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 156 PDFADAYCNRGMAQLLLLRNEEARQSFERALALAPRH 192 + L EA A L Sbjct: 101 IKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADK 137 Score = 40.3 bits (94), Expect = 8e-06 Identities = 16/101 (15%), Positives = 33/101 (32%) Query: 153 ALKPDFADAYCNRGMAQLLLLRNEEARQSFERALALAPRHMQATFGKGLVSVNLRHFDQA 212 + D + + Q + E+A + F+ L + G G + +D A Sbjct: 30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 89 Query: 213 LVAFNAALALKPGAAAVIAQRGRLYVQMGRFKEAETDFDTA 253 + +++ + +Q G EAE+ A Sbjct: 90 IHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLA 130 Score = 40.3 bits (94), Expect = 8e-06 Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 3/114 (2%) Query: 48 QILALVPDHFDALHLLGASALDNGRLDLAEQALTRAVAVEPRNAEAQANLGLVLSSLKRY 107 + + D + L+ L + +G+ + A + ++ ++ LG ++ +Y Sbjct: 27 MLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQY 86 Query: 108 EEARAAQERAIALKPNFATALTGLGNTLMNMRLFAQAIEAHDRAIAL---KPDF 158 + A + + L+ A+A A L K +F Sbjct: 87 DLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140 Score = 34.1 bits (78), Expect = 8e-04 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 3/104 (2%) Query: 24 DGLLTQAVAAYRAGRHADAQAVCGQILALVPDHFDALHLLGASALDNGRLDLAEQALTRA 83 + L + A Y++G++ DA V + L LGA G+ DLA + + Sbjct: 37 EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 96 Query: 84 VAVEPRNAEAQANLGLVLSSLKRYEEARAAQERAIAL---KPNF 124 ++ + + L EA + A L K F Sbjct: 97 AIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 525 bits (1355), Expect = 0.0 Identities = 203/333 (60%), Positives = 248/333 (74%), Gaps = 1/333 (0%) Query: 6 ILVTGAAGFIGFHLAQRLLAEGRQVIGIDNINAYYDPKLKQARLDRLAAQPGFIFHKLDL 65 LVTGAAGFIGFH+++RLL G QV+GIDN+N YYD LKQARL+ LA QPGF FHK+DL Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA-QPGFQFHKIDL 61 Query: 66 VDRAGVKALFAAHHFPAVVHLAAQAGVRYSLDNPHAYVDANLEGFINILEGCRHHGCAHL 125 DR G+ LFA+ HF V + VRYSL+NPHAY D+NL GF+NILEGCRH+ HL Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 126 LFASSSSVYGANTKLPFSVKDNVDHPISLYAASKKANELMAHSYSHLYRLPATGLRFFTV 185 L+ASSSSVYG N K+PFS D+VDHP+SLYAA+KKANELMAH+YSHLY LPATGLRFFTV Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181 Query: 186 YGPWGRPDMAMFIFAKAILAGQPVRLFNHGQMRRDFTYIDDIVQAIHRLIGRPPQGNPDW 245 YGPWGRPDMA+F F KA+L G+ + ++N+G+M+RDFTYIDDI +AI RL P + W Sbjct: 182 YGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQW 241 Query: 246 DGTRPDPSSSRAPWRIYNIGNNHPEQLMDVITLLEKEFGRPAIKEMLPMQPGDVEATYAD 305 P++S AP+R+YNIGN+ P +LMD I LE G A K MLP+QPGDV T AD Sbjct: 242 TVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSAD 301 Query: 306 VSDLERDIGFRPATPIADGIARFARWYREYHQI 338 L IGF P T + DG+ F WYR+++++ Sbjct: 302 TKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 446 bits (1150), Expect = e-155 Identities = 138/386 (35%), Positives = 199/386 (51%), Gaps = 12/386 (3%) Query: 195 DRERLMAESHRLQKELSELKPASANRKKVLVDGIVGDSPALRALLDKINVVAKSNAPVLL 254 D L+ R E + +P+ +VG S A++ + + + +++ +++ Sbjct: 107 DLTELIGIIGRALAEP-KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMI 165 Query: 255 RGESGTGKELVAKAIHELSNRAKRPFIKINCAALPETVLESELFGHEKGAFTGAINSRKG 314 GESGTGKELVA+A+H+ R PF+ IN AA+P ++ESELFGHEKGAFTGA G Sbjct: 166 TGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTG 225 Query: 315 RFELADKGTLFLDEIGEISPAFQAKLLRVLQEQEFERVGGNQTIKVDVRIVTATNRNLEE 374 RFE A+ GTLFLDEIG++ Q +LLRVLQ+ E+ VGG I+ DVRIV ATN++L++ Sbjct: 226 RFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQ 285 Query: 375 AVSRNEFRADLYYRISVVPIKLPPLRERRSDIPQLAHEFLRRFNCENERDLTFDVSAIEV 434 ++++ FR DLYYR++VVP++LPPLR+R DIP L F+++ E FD A+E+ Sbjct: 286 SINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALEL 345 Query: 435 LMHCGFPGNVRELENCVQRTATLAAGSAIGQHDFACSRNECMSAILWKGNTVTPPPPRGQ 494 + +PGNVRELEN V+R L I + E S I Sbjct: 346 MKAHPWPGNVRELENLVRRLTALYPQDVITREIIEN---ELRSEIPDSPIEKAAARSGSL 402 Query: 495 PIVPLPILPRSSAPIEAPAESPAAVDIDEGEYSESMDGGAVPERERIVQAMERSGWVQAK 554 I + A M E I+ A+ + Q K Sbjct: 403 SISQAV--EENMRQYFASFGDALPPSGLYDRVLAEM------EYPLILAALTATRGNQIK 454 Query: 555 AARLLGLTPRQIGYALKKYNIEVKRF 580 AA LLGL + +++ + V R Sbjct: 455 AADLLGLNRNTLRKKIRELGVSVYRS 480
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 100 bits (250), Expect = 3e-27 Identities = 69/263 (26%), Positives = 111/263 (42%), Gaps = 29/263 (11%) Query: 39 EQKTLVLTGGSRGIGHATAKLFSDAGWRILTCSRQPFDGGRCPWDAGA----ANHVQVDL 94 E K +TG ++GIG A A+ + G I P + A A D+ Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 95 SDRQAIPRAIAEIKAKLDGAPLHALINNAAI-SPKATDGGRLDSLSTSVETWMTVFHVNF 153 D AI A I+ ++ P+ L+N A + P S S E W F VN Sbjct: 67 RDSAAIDEITARIEREM--GPIDILVNVAGVLRPGLIH-------SLSDEEWEATFSVNS 117 Query: 154 LGPILLARGLFEELK-RGQGAVVNVTSIVGTRVHPFAGTAYATSKAALACLTREMAHDFA 212 G +R + + + R G++V V S V + AYA+SKAA T+ + + A Sbjct: 118 TGVFNASRSVSKYMMDRRSGSIVTVGS-NPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 213 PHGIRVNAIAPGEIKTEM-----VSPETEAR--------FSPLIPMRRIGAPEEVAKVLF 259 + IR N ++PG +T+M + F IP++++ P ++A + Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 260 FLCSDAASYVTGEEIQINGGQHL 282 FL S A ++T + ++GG L Sbjct: 237 FLVSGQAGHITMHNLCVDGGATL 259
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 2e-04 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%) Query: 202 VTAPYDGILRGI-VRDGCDVAAGVALAEIDPRGRHAQWTGIDAQGQALAQATLAAIRLHA 260 + + I++ I V++G V G L ++ G A +L QA L R Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEAD---TLKTQSSLLQARLEQTRYQI 155 Query: 261 ADRI 264 R Sbjct: 156 LSRS 159
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 85.1 bits (210), Expect = 2e-22 Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 12/194 (6%) Query: 20 APIQDSAHCRAVIQRAVDELGGIDILVNNAAHQATFSEIGDISDDEWEMTFRTNIHAMFY 79 A ++DSA + R E+G IDILVN A I +SD+EWE TF N +F Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVN-VAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 80 LTKAAVPHMKP--GSAIVNTASVNSDMPNPSLLAYATTKGAIQNFTGGLAQMLADKGIRA 137 +++ +M +IV S + +P S+ AYA++K A FT L LA+ IR Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 138 NAVAPGPI-----WTPLIPSTMPEEKVTSFGQQ----VPMKRAGQPAELATAYVMLADPL 188 N V+PG W+ E+ + + +P+K+ +P+++A A + L Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 189 SSYTSGTTVAVTGG 202 + + + + V GG Sbjct: 243 AGHITMHNLCVDGG 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.1 bits (138), Expect = 6e-12 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 1/141 (0%) Query: 2 RVLIVDDHPIVASGCRALLSTDPDLELLEASDAESGEASFVARRPDVSVIDINLPTVSGF 61 +L+ DD + + L + ++ S+A + A D+ V D+ +P + F Sbjct: 5 TILVADDDAAIRTVLNQAL-SRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 ELARRILAHEASARLIMFSMNDDPVFAARAIDIGAKGYVSKSGDPNDLAEAIREVARGGS 121 +L RI +++ S + + A +A + GA Y+ K D +L I Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 YLPPAIARSIAFAGATVAQSP 142 P + V +S Sbjct: 124 RRPSKLEDDSQDGMPLVGRSA 144
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 67.3 bits (164), Expect = 2e-15 Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 2/112 (1%) Query: 63 GRNEPPPQKRPPIAPELMNLP-ALNVDIQFDQDTPIVRPDSYQTVGRIADAMVHSELLPY 121 G P P APE+ L D+ F+ + ++P+ + ++ + + + Sbjct: 194 GEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDG 253 Query: 122 TFLIVGHVEANGRREPNVILSQRRADAIRDILANTFKISVKRLQSIGLGEEQ 173 + +++G+ + G N LS+RRA ++ D L + I ++ + G+GE Sbjct: 254 SVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLI-SKGIPADKISARGMGESN 304
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 73.7 bits (181), Expect = 8e-17 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 16/129 (12%) Query: 1 MKVLVTGGSGFIGHHLVSALAARGTEVRVLDIRCPTHMI------------DEVEYIEGS 48 MK LVTG +GFIG H+ L G +V +D + + ++ + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 49 VLDAGLVRN--AVAGVDQVYHLAGLPGM--WMPDREDFYRVNCVGTENVLAAARASRIRR 104 + D + + A ++V+ + + + + N G N+L R ++I+ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 105 FLHCSTESI 113 L+ S+ S+ Sbjct: 121 LLYASSSSV 129
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 30.0 bits (67), Expect = 0.008 Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 9/48 (18%) Query: 144 LILGMIATGIAVGTVSAVLGAILISLGMAWKAKMEEVFLAQELGPDYV 191 I+G IATG AVGTVS +LG W K E PD V Sbjct: 43 AIVGGIATGAAVGTVSGLLG---------WGLKQAEEANKTPDKPDKV 81
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 33.7 bits (77), Expect = 5e-04 Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 35/130 (26%) Query: 30 ALAVALALPLGAGSVHAAPSPVAAPAASTTHVYLLRGVLNIFSLG------LD-DIAAKL 82 A A A LG + PS A+S T + L IF G LD + L Sbjct: 20 AFADEFADNLGLTLLPVEPSTQVNAASSHT-----KPPLVIFLSGDGGWATLDKAVGGIL 74 Query: 83 DAQGIPNTVANFVSWSSL---------------ADEAAAAYRA--GRIKTIILVGHSSGA 125 QG P V WSSL Y+A G + +IL+G+S GA Sbjct: 75 QQQGWP-----VVGWSSLKYYWKQKDPKDVTQDTLAIIDKYQAEFGT-QKVILIGYSFGA 128 Query: 126 TALPDMINKL 135 +P ++N++ Sbjct: 129 EVIPFVLNEM 138
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 68.4 bits (167), Expect = 9e-16 Identities = 55/219 (25%), Positives = 93/219 (42%), Gaps = 1/219 (0%) Query: 19 RTILQSIVSPVVSTSLYFVVFGAAIGSRISEVQGVSYGTFIVPGLVMLSVLTQSIANASF 78 + L S++ + +Y GA +G + V GVSY F+ G+V S +T + + Sbjct: 29 KAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAAGMVATSAMTAATFETIY 88 Query: 79 GIYFPKFI-GTIYEILSAPISHFEIVLGYVGAAATKSIVLGLIILATAGLFVPLHIQHPV 137 + T +L + +IVLG + AATK+ + G I A + Sbjct: 89 AAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLSLL 148 Query: 138 WMLTFLVLTAITFSLFGFIIGIWADGFEKLQMIPMLVVTPLTFLGGSFYSVNMLPPTWHT 197 + L + LT + F+ G ++ A ++ LV+TP+ FL G+ + V+ LP + T Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208 Query: 198 IALLNPVVYLISGFRWSFYEIADVRVEISVAMTLGFLVI 236 A P+ + I R V V V ++VI Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVI 247
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.0 bits (67), Expect = 0.009 Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 12/107 (11%) Query: 125 LVQKDGVLNTTVTLT--------GSAEVALARNPRRGTAVARREAPQQYDDNGEPVVLTP 176 LVQ T TL G+ LA N ++ +AP +P P Sbjct: 527 LVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQPP 586 Query: 177 QPQLLPGRPIAPQQRPDDGYIYPADGSDNGVRYPAPRGTSRRVYDAQ 223 QP APQ + N G + ++ A+ Sbjct: 587 QPPQPQPEAPAPQPPAGR----ELSAAANAAVNTGGVGLASTLWYAE 629
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 101 bits (252), Expect = 6e-25 Identities = 78/401 (19%), Positives = 150/401 (37%), Gaps = 17/401 (4%) Query: 37 FMSILDIQIVSASLSEIQAGLSASSSEVSWVQTAYLIAEVIAIPLSGFLSRALGTRLLFA 96 F S+L+ +++ SL +I + + +WV TA+++ I + G LS LG + L Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 97 ISAAGFTISSFLCGFA-SSIEQMILWRAIQGFLGAGMIPTVFASAYTVFPRSKFHIVGPI 155 S + S +I+ R IQG A V P+ + Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 156 IGLVATLAPTIGPTVGGYITDAMSWHWLFFINIPPGVMITIGVLALVDFDEPHFELLERF 215 IG + + +GP +GG I + HW + + IP ++ I V L+ + + F Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIP--MITIITVPFLMKLLKKEVRIKGHF 199 Query: 216 DWWGLLFMAGFLGSLEYVLEEGPQHEWLQETSVAVFAVVCAVSAVCFFWRVLTVDEPIVD 275 D G++ M+ + + F +V +S + F + V +P VD Sbjct: 200 DIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 276 LGAFTDRNFAVGCLLQFCVGIGLYGLTYIYPRYLAEVRGYSALMIGET-MFVSGVTMFLM 334 G + F +G L + + G + P + +V S IG +F +++ + Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 335 APVVGRLMVKIDMRLIIAFGLIIFAIGSYQMTGITRDYDFWELFLPQVLRGVGMMCAMVP 394 + G L+ + ++ G+ ++ + W + + V G+ Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVSFLTA-SFLLETTSWFMTIIIVFVLGGLSFTKTV 368 Query: 395 TNNIALGTLAPDRVKNASGLFNLMRNLGGAVGLAVINQVLN 435 + I +L L N L G+A++ +L+ Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 110 bits (277), Expect = 2e-28 Identities = 56/361 (15%), Positives = 111/361 (30%), Gaps = 81/361 (22%) Query: 146 VSGHIQEIVPRDNSVVRKGDVIFRIDDGDYKIAVDAARSKIATQEATIARIG-------- 197 + ++EI+ ++ VRKGDV+ ++ + +S + R Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 198 -------------------------------------RQVAAQQSAVEQAQANLTSSEAA 220 Q ++ +++ +A + A Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 221 M--KRAGLDYERQQ-----ALSSKGFASHATFEQSEAARDQGMAAVRAARAAFDAARDNV 273 + E+ + +L K + + E + + +R ++ + + Sbjct: 223 INRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI 282 Query: 274 EVTKAQQV---------------EAQAQLAELKTSLAKAERDLEFATVRAPVDGTFSNRL 318 K + + + L LAK E + + +RAPV Sbjct: 283 LSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLK 342 Query: 319 VNT-GDFVAVGQRLGNVVPLDDVF-IDANFKETQLKRIRPGQPVTIKVDAYGAR---GFK 373 V+T G V + L +VP DD + A + + I GQ IKV+A+ Sbjct: 343 VHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLV 402 Query: 374 GVVDSISPAAGSVFTLLPPDNATGNFTKIVQRLPVRIRVPKEVARQNLLRAGMSVYVTVD 433 G V +I+ A D G ++ + + L +GM+V + Sbjct: 403 GKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGN--KNIPLSSGMAVTAEIK 453 Query: 434 T 434 T Sbjct: 454 T 454
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 73.9 bits (181), Expect = 2e-18 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 8/160 (5%) Query: 13 QDEDTSKRRQILDGAREVFMELGFDGASMGEIARAAGVSKGTLYVYFTDKTALFEAIVEE 72 + E R+ ILD A +F + G S+GEIA+AAGV++G +Y +F DK+ LF I E Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 73 ETRTAV-LFRFDPDRDIATNLTGFGEAYIALVCRPGGGSAIRTVMAIAER-MPDVG---- 126 L + L+ E I ++ R +M I VG Sbjct: 66 SESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAV 125 Query: 127 -RRYYDRVLEGTINCLTTYLRGRVEAGQLAID-DCQLAAS 164 ++ + + + + L+ +EA L D + AA Sbjct: 126 VQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAI 165
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 38.4 bits (89), Expect = 6e-05 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 20/105 (19%) Query: 1 MVLMAAFVQQAQA-----------HPERPPAELPTVDVDA--------PKRTAKPKPQVR 41 ++ A ++ QA PE P P + PK KP +V+ Sbjct: 48 TMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQ 107 Query: 42 HEAQR-PKPGAPRSPAPATPADTAAAPAAPSGAPAVGSGPARPQG 85 + +R KP R +P A ++ + A + G Sbjct: 108 EQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASG 152
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 40.3 bits (94), Expect = 3e-06 Identities = 22/105 (20%), Positives = 26/105 (24%), Gaps = 1/105 (0%) Query: 64 DDAPASSTAAAAPAAAAPATAAPSTPAPVVNPPVVNAPAPVTAAPVAT-APAPLAPPAAV 122 A S APA P A P PVV P P P P P Sbjct: 45 APAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK 104 Query: 123 QMPAAPVTSNAAPPAPAAPVASPAPAATTVAVAPAAGQPAPAAAA 167 P V P + T A ++ A + Sbjct: 105 PKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKP 149 Score = 36.1 bits (83), Expect = 9e-05 Identities = 20/111 (18%), Positives = 28/111 (25%), Gaps = 3/111 (2%) Query: 62 DDDDAPASSTAAAAPAAAAPATAAPSTPAPVVNPPVVNAPAPVTAAPVATAPAPLAPPAA 121 D + P + P P P P V+ P P P Sbjct: 58 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP---KPKPKPKPVKKVEQP 114 Query: 122 VQMPAAPVTSNAAPPAPAAPVASPAPAATTVAVAPAAGQPAPAAAADPNSP 172 + + A+P AP + AT P + A N P Sbjct: 115 KRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQP 165
>PF06580#Sensor histidine kinase Length = 349 Score = 37.2 bits (86), Expect = 1e-04 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 17/127 (13%) Query: 272 RAAMLRDIDQVSRMLDETLDYLRDDTKAEQPARIELSSLLETI-------CCDFADVGHA 324 RA +L D + ML + +R + ++ L+ L + F D Sbjct: 183 RALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQ- 241 Query: 325 VTYQGPQRLVCEGRPRALSRAVTNVVENAVKHG-----SEVVVSLSVATD-GMIAIEVAD 378 Q ++ P L V +VEN +KHG + L D G + +EV + Sbjct: 242 FENQINPAIMDVQVPPML---VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVEN 298 Query: 379 DGPGIPQ 385 G + Sbjct: 299 TGSLALK 305
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.1 bits (208), Expect = 1e-20 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 4/151 (2%) Query: 18 AARILCVEDDREIAALLTELLQEHGFAPRFVASAAAMNDVLQREQVDLIMLDLMLPDEDG 77 A IL +DD I +L + L G+ R ++AA + + DL++ D+++PDE+ Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 78 MSICRRLRQV-STVPIIMVTAKGEDIDRILGLELGADDYVVKPFNPRELVARI-RALLRR 135 + R+++ +P+++++A+ + I E GA DY+ KPF+ EL+ I RAL Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 136 SQLHPAVIAARQAPMTFDGWRIEPATRTLFD 166 + + Q M G A + ++ Sbjct: 123 KRRPSKLEDDSQDGMPLVG--RSAAMQEIYR 151
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 61.0 bits (148), Expect = 3e-12 Identities = 19/152 (12%), Positives = 47/152 (30%), Gaps = 12/152 (7%) Query: 116 DSLTQQNTLRTNEAALRNVRAQRDEKIATLALAEANMARQQVTLAQKASSRADYDSAEAT 175 ++ + E + + L E+ + + + Sbjct: 246 KQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLV---TQLFK----- 297 Query: 176 VKQTQAQIAQLDAQIAEAEVAIETARVNLAYTRITAPIDGTVLSI-VTQQGQTVNAVQSA 234 + ++ Q I + + + I AP+ V + V +G V + Sbjct: 298 -NEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-- 354 Query: 235 PTIVVLGQVETMTVRVEISEADVVKVKPGQNV 266 +V++ + +T+ V + D+ + GQN Sbjct: 355 TLMVIVPEDDTLEVTALVQNKDIGFINVGQNA 386 Score = 54.1 bits (130), Expect = 5e-10 Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 16/182 (8%) Query: 25 KPQRRWSRLILGAAVALAVVALLVARYSRNPNANLVTAPVTIGDVEQTVLATGTLKPV-K 83 P R RL+ + V+A +++ +G VE A G L + Sbjct: 51 TPVSRRPRLVAYFIMGFLVIAFILS---------------VLGQVEIVATANGKLTHSGR 95 Query: 84 LVAVGAQASGRLVTLNVELGQKIKAGDLIGEIDSLTQQNTLRTNEAALRNVRAQRDEKIA 143 + + + + V+ G+ ++ GD++ ++ +L + +++L R ++ Sbjct: 96 SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQI 155 Query: 144 TLALAEANMARQQVTLAQKASSRADYDSAEATVKQTQAQIAQLDAQIAEAEVAIETARVN 203 E N + + + + Q + Q + E+ ++ R Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAE 215 Query: 204 LA 205 Sbjct: 216 RL 217
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 2e-06 Identities = 22/187 (11%), Positives = 56/187 (29%), Gaps = 12/187 (6%) Query: 57 SPTDKTLPYPAQIVIPTPQLWVVSAPVAGMVTNLAVGRGDRVTTGQPLLTLESPSFVSLQ 116 + ++ + + + +V + V G+ V G LL L + + Sbjct: 78 GQVEIVATANGKLT-HSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADT 136 Query: 117 REYLHALAQEVLAAQQLKRNADLFDGKAVPQRVLESSQAEARQASIVVAERRQMLHLSGL 176 + +L Q L + + + + +P+ L + V ++ Sbjct: 137 LKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIK---- 192 Query: 177 SDDAIARLTNEAAISATLTVNAPQAASVVEIAVSPGQRMEQSAPLV--KLARLSPLWVEI 234 + + +N + + ++ R E + + +L S L + Sbjct: 193 -----EQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQ 247 Query: 235 AIPATNI 241 AI + Sbjct: 248 AIAKHAV 254 Score = 34.0 bits (78), Expect = 8e-04 Identities = 37/225 (16%), Positives = 71/225 (31%), Gaps = 51/225 (22%) Query: 124 AQEVLAAQQLKRNADLFDGKAVPQ-RVLE---------------SSQAEARQASIVVAER 167 + +L + L +A+ + VLE SQ E ++ I+ A+ Sbjct: 228 NLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKE 287 Query: 168 RQMLHLSGLSDDAIARLTNEAAISATLT--------------VNAPQAASVVEIAV-SPG 212 L ++ + +L LT + AP + V ++ V + G Sbjct: 288 EYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEG 347 Query: 213 QRMEQSAPLVKLARLS-PLWVEIAIPATNIGAIKIGAKVEI--DGYP------TPGRVIL 263 + + L+ + L V + +IG I +G I + +P G+V Sbjct: 348 GVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKN 407 Query: 264 VS------ETTDAATQTI--LVRAEIPNNG---ELHSGQTAAARI 297 ++ + I + + L SG A I Sbjct: 408 INLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEI 452
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 691 bits (1784), Expect = 0.0 Identities = 231/1037 (22%), Positives = 447/1037 (43%), Gaps = 40/1037 (3%) Query: 6 LVAFALSQRLFVLLSVLLLIGAAAVFLPSLPIDAFPDVSPVQVKIIMKAPGLTPEEVEQR 65 + F + + +F + ++L+ A A+ + LP+ +P ++P V + PG + V+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 66 VTVPIELELLGLPNKRILRSTTKYA-LADITVDFEEGTDIYWARNQVSERLSNISRDFPD 124 VT IE + G+ N + ST+ A IT+ F+ GTD A+ QV +L + P Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 125 GVSGGLAPITSPLGEMFM---FTIDSPELSLAERRSLLDWVIRPALRTVPGVADVNALGG 181 V + M F D+P + + + ++ L + GV DV G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 182 QVRAFEIVPRTDALAARGISYELFRKAIEANSRNDGAGRVNQGEDSALVRIEGSIRGIDD 241 Q A I D L ++ ++ + AG++ ++ SI Sbjct: 181 Q-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 242 IKA-------IVVDTRDGIPIRVSDVARVRIGALTRYGAVTADGKGETVEGLVLGLRGAN 294 K + DG +R+ DVARV +G +GK + GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGAN 298 Query: 295 AGQLVRDVRDRLEELKPSLPASVSINVFYDRSKLVNRAVGTVVRALGEATVLVVVLLLLF 354 A + ++ +L EL+P P + + YD + V ++ VV+ L EA +LV +++ LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 355 LGNWRASLVIALSLPLAIAMALLVMRAVGMSANLMSLGGLAIAIGMLIDALVVVVENIVG 414 L N RA+L+ +++P+ + ++ A G S N +++ G+ +AIG+L+D +VVVEN+ Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVE- 417 Query: 415 NLGKHDQSRNAPLVHIVFRSVCEVLQPVASGVLIIIIVFVPLLTLQGLEGKLFIPVALAI 474 + P +S+ ++ + +++ VF+P+ G G ++ ++ I Sbjct: 418 ---RVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 475 IFALAASLLLALTVIPVATSFALT--SASHHDPL---------LIRAAQRVYAPALGWAL 523 + A+A S+L+AL + P + L SA HH+ + Y ++G L Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 524 GNERKVILAAMLCLVAAGYGYTRLGKTFMPTMDEGDVIVSVETLPSVNLDESLAINARLQ 583 G+ + +L L + + RL +F+P D+G + ++ + + + ++ Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 584 AALMKVPDVAGIIARTGSDELGLDPMGPNQTDTFLVLKPAEQR--QSENREALLQKLRDV 641 +K A + + + N F+ LKP E+R + EA++ + + Sbjct: 595 DYYLKNE-KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAK-- 651 Query: 642 LSDFPGISLSFTQPIDM-RVQEMISGVRGDVA-VKIFGPDIAQLNDIAARLSTILS-GID 698 + I F P +M + E+ + D + G L +L + + Sbjct: 652 -MELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 699 GAEDVYTTLNEGAQYYTVTVNRLEAGRLGLTVDSIATSLRTQIEGRTIGTALESGRRTPI 758 V E + + V++ +A LG+++ I ++ T + G + ++ GR + Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 759 LVRGSEATREAPTLLAMLPLTLAAGQHVALSQVARIQRVDGPVKIDREDGNRMSVVRSNV 818 V+ R P + L + A G+ V S V G +++R +G ++ Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA 830 Query: 819 RGRDMVGFVQAAQQKVAAELQLPAGYRLTWGGQFENQQRAAARLSVVVPVAIGLIFVLLF 878 G A + +A+ +LPAG W G ++ + + +V ++ ++F+ L Sbjct: 831 APGTSSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 879 TTFGSVRQALLVLINIPFALIGGVFALVSTGEYLSVPASVGFIALLGIAVLNGVVLVSHF 938 + S + V++ +P ++G + A + V VG + +G++ N +++V Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 939 NQL-RTQGLAEHLIVVEGAKRRLRPVLMTASITALGLVPLLFASGPGSEVQRPLAIVVIG 997 L +G + + RLRP+LMT+ LG++PL ++G GS Q + I V+G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 998 GLLSSTLLTLILLPILY 1014 G++S+TLL + +P+ + Sbjct: 1009 GMVSATLLAIFFVPVFF 1025 Score = 90.7 bits (225), Expect = 2e-20 Identities = 83/513 (16%), Positives = 160/513 (31%), Gaps = 43/513 (8%) Query: 5 RLVAFALSQRLFVLLSVLLLIGAAAVFLPSLPIDAFPDVSPVQVKIIMKAPGLTPEEVEQ 64 V L LL L++ V LP P+ +++ P +E Q Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 65 RVTVPIELELLGLPNKRILRSTTKYAL---------ADITVDFEEGTDIYWARNQVSERL 115 +V + L + T V + + N + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 116 SNISRDFPDGVSGGLAPITSP----LGEMFMFTIDSPELSLAERRSLLDW---VIRPALR 168 + G + P P LG F + + + +L ++ A + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 169 TVPGVADVNALGGQVRA--FEIVPRTDALAARGISYELFRKAIEANSRNDGAGRVNQGED 226 + V G F++ + A G+S + I Sbjct: 708 HPASLVSVR-PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 227 SALVRIEGSIR---GIDDIKAIVVDTRDGIPIRVSDVARVRIGA----LTRY-GAVTADG 278 + ++ + +D+ + V + +G + S L RY G + + Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEI 826 Query: 279 KGETVEGLVLGLRGANAGQLVRDVRDRLEELKPSLPASVSINVFYDRSKLVNRAVGTVVR 338 +GE G G D +E L LPA + + + S + Sbjct: 827 QGEAAPGTSSG-----------DAMALMENLASKLPAGIGYD-WTGMSYQERLSGNQAPA 874 Query: 339 ALGEATVLVVVLLLLFLGNWRASLVIALSLPLAIAMALLVMRAVGMSANLMSLGGLAIAI 398 + + V+V + L +W + + L +PL I LL ++ + GL I Sbjct: 875 LVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTI 934 Query: 399 GMLIDALVVVVENIVGNLGKHDQSRNAPLVHIVFRSVCEVLQPVASGVLIIIIVFVPLLT 458 G+ +++VE + K + +V +V L+P+ L I+ +PL Sbjct: 935 GLSAKNAILIVEFAKDLMEKEGKG----VVEATLMAVRMRLRPILMTSLAFILGVLPLAI 990 Query: 459 LQGLEGKLFIPVALAIIFALAASLLLALTVIPV 491 G V + ++ + ++ LLA+ +PV Sbjct: 991 SNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPV 1023
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 28.7 bits (64), Expect = 0.007 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 8/94 (8%) Query: 53 EHADKFTDRILFLDGFPNMQV--------LDPLRIGQNVKEIIECDLAAEIAARTLYQEA 104 E D +R+L + G P V + + E+++ + + + Sbjct: 59 ETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFV 118 Query: 105 ATYCHGVKDYVSRDLFEQLMKDEEHHIDFLETQL 138 +D + DLF L+++ E + L + L Sbjct: 119 IGLAEENQDNATADLFVGLIEEVEKQVWMLSSYL 152
>cloacin#Cloacin signature. Length = 551 Score = 28.9 bits (64), Expect = 0.002 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 45 GVSDSGTDGSGLSSWFFNTSTDAMGNPIDGGGDSGGGDGGGDGGG 89 GV +DGSG SS N G+ I GG SG G+GGG+G Sbjct: 28 GVGGGASDGSGWSSEN-NPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Score = 28.1 bits (62), Expect = 0.004 Identities = 14/37 (37%), Positives = 18/37 (48%) Query: 49 SGTDGSGLSSWFFNTSTDAMGNPIDGGGDSGGGDGGG 85 SG DG G ++ +TS + G P G G DG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG 38
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 29.5 bits (66), Expect = 0.002 Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 4/87 (4%) Query: 1 MKKTLAALAAVATLSTAALAPAPAEARNGRVAAGV-AAGLIGGALIGGAIAAGSNPYYYG 59 MKKT A+ AVA A +A A + A + + I N G Sbjct: 1 MKKTAIAI-AVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAG 59 Query: 60 P--GYTYSPGYSYGPGYSYYGGPAYVA 84 GY +P + GY + G Y Sbjct: 60 AFGGYQVNPYVGFEMGYDWLGRMPYKG 86
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 25.9 bits (57), Expect = 0.023 Identities = 14/49 (28%), Positives = 20/49 (40%) Query: 6 TALVAVATIAGSLSVTAPAAKAGDVGAGVAAGLIGGALIGGAIASSRPA 54 T VA A IA A G + A G++ G ++GG + P Sbjct: 112 TGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPH 160
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.6 bits (97), Expect = 4e-06 Identities = 43/259 (16%), Positives = 72/259 (27%), Gaps = 31/259 (11%) Query: 76 QTPPATVTDTPATAVLPAEQPSVPP-AAETVEVTTTAESPALPTPSLPAETVDTTAATVL 134 QT T TP A+ PSVP E V P P P+ P+ET +T A Sbjct: 990 QTVDTTNITTPNNI--QADVPSVPSNNEEIARVDEAPVPP--PAPATPSETTETVAENSK 1045 Query: 135 PKTLTTPVDRIESAAP---DRGMADDAARTVAAVEKLADKPRL-----DTTPQAAPAVPT 186 ++ T + ++ +R +A +A V A + + + +T T Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 187 DA--------VAAPTSSPQVLASADPAITTPAV--PAPAPATPADDPIAAKLAALGEQPT 236 P+V + P P PA D + K T Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTT 1165 Query: 237 RQERPAAGEHRASVK--VASVQLRRS------IMKKRQAREKQMAARRAKQRRIAEHARA 288 A E ++V+ V + + Q + R Sbjct: 1166 ADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRR 1225 Query: 289 ARQAAAQQAQFPDPFQQQP 307 + ++ + Sbjct: 1226 SVRSVPHNVEPATTSSNDR 1244 Score = 40.8 bits (95), Expect = 7e-06 Identities = 35/156 (22%), Positives = 51/156 (32%), Gaps = 18/156 (11%) Query: 173 RLDTTPQAAPAVPTDAVAAPTSSPQVLASADPAITTPAVPAPAPATPADDPIAAKLAALG 232 R T P + A S P P VP PAPATP++ + Sbjct: 988 RNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAP-VPPPAPATPSETTETVAENSKQ 1046 Query: 233 EQ------------PTRQERPAAGEHRASVKVASVQLR----RSIMKKRQAREKQMAARR 276 E T Q R A E +++VK + S K+ Q E + A Sbjct: 1047 ESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATV 1106 Query: 277 AKQRRIAEHARAARQAAAQQAQFPDPFQQQPGFGQP 312 K+ + ++ +Q P Q+Q QP Sbjct: 1107 EKEEKAKVETEKTQEVPKVTSQVS-PKQEQSETVQP 1141
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 25.1 bits (54), Expect = 0.037 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 7 LIIGAIAGWLAGLIVRGAGFGLIGNIVVGIIGA--LVAGYVLPALHITLASGTLGAILDA 64 LI AI L GL V + G+IV I+ A +VA V+ A+ A+ LG L Sbjct: 384 LIGKAITKALEGLGVDKKTAEMAGSIVGAIVAAIAMVAVIVVVAVVGKGAAAKLGNALSK 443 Query: 65 TIGAVIVLVILSLIRR 80 +G I ++ +++++ Sbjct: 444 MMGETIKKLVPNVLKQ 459
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 27.9 bits (62), Expect = 0.012 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 13/117 (11%) Query: 11 ILVVEDEYMLADELRCEIGDAGATVLGPVGTVADALALAKREARIDGAVLDVNLRGEMAF 70 ILV +D+ + L + AG V A D V DV + E AF Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWI-AAGDGDLVVTDVVMPDENAF 63 Query: 71 PVADLLIQR--GVPFIFTTGYDESVIPDRFANILRC------EKPIAVDGIIRALGR 119 + + + +P + + + KP + +I +GR Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNT---FMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 102 bits (256), Expect = 1e-24 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 611 RARILLADDNADMRDYVRRLLEAR-YEVETVGDGEAALAAMARAKPDLVLSDVMMPRIDG 669 A IL+ADD+A +R + + L Y+V + +A DLV++DV+MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 670 MQLLARVRA-DPKVSTVPIILLSARAGEESRVEGMQAGADDYLIKPFSASELLARVEAHL 728 LL R++ P +P++++SA+ + ++ + GA DYL KPF +EL+ + L Sbjct: 63 FDLLPRIKKARPD---LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 729 KMAQLRAEATESLRAS 744 + R E Sbjct: 120 AEPKRRPSKLEDDSQD 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.6 bits (134), Expect = 2e-10 Identities = 41/123 (33%), Positives = 52/123 (42%), Gaps = 10/123 (8%) Query: 372 TILVVEDDALVRDYVVAQVRRLGYRTLSASNAVEGLALIDNPERIDLLFTDVIIPGGMNG 431 TILV +DDA +R + + R GY SNA I DL+ TDV++P N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA-AGDGDLVVTDVVMP-DENA 62 Query: 432 RQLALEAEKRRPGLKVLYTSGYT--ENAI--VHHGRLDADVLLLAKPYLSADLARMIRTA 487 L +K RP L VL S AI G D L KP+ +L +I A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYD----YLPKPFDLTELIGIIGRA 118 Query: 488 LEA 490 L Sbjct: 119 LAE 121
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 29.8 bits (67), Expect = 0.007 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 7/60 (11%) Query: 89 EVATYQLDKRYLRQDGSV------VWARVIVNPIQDAADNVRWFCAVVEDITATRILEEQ 142 + + L+ + + S + R ++ + W V++ T I EQ Sbjct: 30 LIKKFMLENGFEHRQYSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEI-GEQ 88
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.0 bits (135), Expect = 2e-10 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 6/118 (5%) Query: 472 DQPGVLVIDDDATTRDSLGRLLTNWGYECAPFEGGAPALRFLGQAAARKRWLVLLDYRLA 531 +LV DDDA R L + L+ GY+ A R++ LV+ D + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGD---LVVTDVVMP 58 Query: 532 GTETGLNIADKIIAAYADRTRLVLMTGDIGPEIAEGARQRGVL-LLRKPVQPIRLSAL 588 E ++ +I A D +++M+ A A ++G L KP L + Sbjct: 59 D-ENAFDLLPRIKKARPD-LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.9 bits (171), Expect = 2e-16 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 6 SLLFVDDHPIYRDAVRRTLELEIEDLSVATAENCSATLALLAAHEVDLCLSDYRLPDGDG 65 ++L DD R + + L V N + +AA + DL ++D +PD + Sbjct: 5 TILVADDDAAIRTVLNQALS--RAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 66 LSLLKEVRTRYPLIAVGLLCADLSPALAEGAASLGAVVCLSK 107 LL ++ P + V ++ A + A A+ GA L K Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 143 bits (361), Expect = 2e-39 Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 23/254 (9%) Query: 139 QNKSWAVSRLRLQDAWKLSDELGRPSRGAGVAICQIDTGV-ISHPELAGVVRAGSYNVIG 197 V ++ W +RG GV + +DTG HP+L + G Sbjct: 20 NEIPRGVEMIQAPAVWN-------QTRGRGVKVAVLDTGCDADHPDLKARIIGGRNFTDD 72 Query: 198 DGTTPEDPTDPLNYAGNPGHGTATAS-VAISPESLDVVGAAPKARHIPIRAIENVVRISQ 256 D PE D GHGT A +A + VVG AP+A + I+ + Sbjct: 73 DEGDPEIFKD------YNGHGTHVAGTIAATENENGVVGVAPEADLLIIKVLNKQGSGQY 126 Query: 257 TSVAEAMDRAVALGADVISLSLGGIWSW-ALQRALERAVAADVIVVAAAGNC------VG 309 + + + A+ D+IS+SLGG L A+++AVA+ ++V+ AAGN Sbjct: 127 DWIIQGIYYAIEQKVDIISMSLGGPEDVPELHEAVKKAVASQILVMCAAGNEGDGDDRTD 186 Query: 310 LVVWPARFDDCIAVAGTDFHDKPWIGSCRGPTVAISAPGQNVYRAAATTGRSGQGQGTSF 369 + +P +++ I+V +F S V + APG+++ + G+ GTS Sbjct: 187 ELGYPGCYNEVISVGAINFDRHASEFSNSNNEVDLVAPGEDIL-STVPGGKYATFSGTSM 245 Query: 370 AVALIAGVAACWLA 383 A +AG A Sbjct: 246 ATPHVAGALALIKQ 259
>cloacin#Cloacin signature. Length = 551 Score = 37.8 bits (87), Expect = 7e-06 Identities = 29/83 (34%), Positives = 32/83 (38%), Gaps = 8/83 (9%) Query: 19 GASAPASSAPMTGLSAAAKPDAAASGTVAVRYGGRGFGGGWHGGGWHGGGWRGGGWGWGG 78 G AS G S+ P SG G GG HG G G GGG G GG Sbjct: 28 GVGGGASDGS--GWSSENNPWGGGSG-----SGIHWGGGSGHGNGGGNGN-SGGGSGTGG 79 Query: 79 GALAAGALLGAGIAATTTPFAWG 101 A A + G A +TP A G Sbjct: 80 NLSAVAAPVAFGFPALSTPGAGG 102
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.2 bits (146), Expect = 5e-12 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 4/105 (3%) Query: 20 RVMVVDDSVVIRGMISRWIASEPDMVVAASLRTGLEAVNQIDRVNPDVAVLDIEMPELDG 79 ++V DD IR ++++ ++ V S I + D+ V D+ MP+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITS--NAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 80 IAALPKLLAKKKNLAVIMASTLTRRNAEISFKALSLGAADYIPKP 124 LP++ + +L V++ S + KA GA DY+PKP Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQN--TFMTAIKASEKGAYDYLPKP 105
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 1e-22 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 5 LVVDDSSVIRKVARRILEGLDFQIVEAEDGEQALEICKRGLPDAVLLDWNMPVMDGYEFL 64 LV DD + IR V + L + + + G D V+ D MP + ++ L Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLL 66 Query: 65 GNLRRMPGGDAPKVVFCTTENDVAHIARALHAGANEYIMKPFDKD 109 +++ D P V+ + +N +A GA +Y+ KPFD Sbjct: 67 PRIKKA-RPDLP-VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.8 bits (215), Expect = 9e-20 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 4/134 (2%) Query: 795 QTQSVLLVDDSPFFRNMLAPVLKSAGYKVRTAASAIEGLATLRSGHTFDIVVTDIEMPEM 854 ++L+ DD R +L L AGY VR ++A + +G D+VVTD+ MP+ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE 60 Query: 855 NGFEFAEAIRADQNLHQLPVIAVSSLVSPAAIERGRQAGLYDYIAK-FDRPGLIAALKEQ 913 N F+ I+ + LPV+ +S+ + + + G YDY+ K FD LI + Sbjct: 61 NAFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 914 IEERARADAAKRAA 927 + E R + Sbjct: 119 LAEPKRRPSKLEDD 132
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.4 bits (65), Expect = 0.031 Identities = 47/207 (22%), Positives = 71/207 (34%), Gaps = 7/207 (3%) Query: 64 AQDAAAKAAAAAAAKAAQDAAAKSAAAAAAKAAQDAAAKQAAKA-AADAAAKAAANAAAK 122 AA + AAAA A++ AA A A + A+ AA +AA A A A AA + Sbjct: 206 TLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGR 265 Query: 123 AATNAAASAASKAATTAATAANAAKTTVAVATTGTAGTTNTTTVTAKNGAATATATATGN 182 A AAS A + A + +A+ + ++T + A T + Sbjct: 266 GLIQVAQGAASLAQAISDAIAVLGRV---LASAPSVMAVGFASLTYSSRTAEQWQDQTPD 322 Query: 183 GTGTGFGTSTAAAKPAAA---TTATATTGTATKGAATTGTAAATTTKTAAATTTSTTAAA 239 G A + +GT T A TT + +T + Sbjct: 323 SVRYALGMDAAKLGLPPSVNLNAVAKASGTVDLPMRLTNEARGNTTTLSVVSTDGVSVPK 382 Query: 240 AKPATTSSTTTTTVAVAKTTAAPAAAA 266 A P ++ TT T + A A Sbjct: 383 AVPVRMAAYNATTGLYEVTVPSTTAEA 409
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.001 Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 5/146 (3%) Query: 6 TQAAQAAATQNQKTVEAALNQKIGALDAAVEAAEQKVNADRQALEQARQAAQQAKQDAQE 65 T Q + N++I +D A A E A+ +KQ+++ Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPP----APATPSETTETVAENSKQESKT 1050 Query: 66 AAEQVERANNAANQAALAAANAKAQTTANAFNQANATLNADNQALTQARESGEQQEQALR 125 + + A Q A AK+ AN + TQ E+ E Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANT-QTNEVAQSGSETKETQTTETKETATVEKE 1109 Query: 126 AAAQQQIQAGYTAAQQATQAAWAEAQ 151 A+ + + + +Q + + Q Sbjct: 1110 EKAKVETEKTQEVPKVTSQVSPKQEQ 1135
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 74.7 bits (183), Expect = 6e-18 Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 17/202 (8%) Query: 3 VTGKIVVVTGGARGIGKALCEAFARAGAAKVIVADLDETAAKAVAESVGGAA-----FKC 57 + GKI +TG A+GIG+A+ A G A + D + + V S+ A F Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQG-AHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 58 DVSQETDISRVIEETERQFGPIALFCSNAGIGGGFDPLAVNVGGT---TDEPWARSWAIH 114 DV I + ER+ GPI + + AG+ + G +DE W +++++ Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGV--------LRPGLIHSLSDEEWEATFSVN 116 Query: 115 VMAHVYAARHLIPRYKARGGGYFLNTISAAGLLSQVGSAPYSTTKHAAVGFAENLAISHK 174 A+R + R G + S + + A Y+++K AAV F + L + Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 175 ADNIKVSILCPQGVDTDMLRSI 196 NI+ +I+ P +TDM S+ Sbjct: 177 EYNIRCNIVSPGSTETDMQWSL 198
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 31.0 bits (70), Expect = 0.009 Identities = 11/35 (31%), Positives = 14/35 (40%) Query: 131 LVRLVESDDGRWWLVAGLFGGLALLSKFTVVMLLP 165 + E W+VAG+ G LA V L P Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTP 58
>cloacin#Cloacin signature. Length = 551 Score = 31.2 bits (70), Expect = 0.006 Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 9/56 (16%) Query: 247 AGMNTPGSPRRGGWTSGSSGG---------WSSGSSSDSGSFSGGGGSFGGGGASG 293 N G P G G+S G W GS S G G GGG + Sbjct: 16 TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Score = 29.7 bits (66), Expect = 0.013 Identities = 18/52 (34%), Positives = 25/52 (48%) Query: 243 ADSFAGMNTPGSPRRGGWTSGSSGGWSSGSSSDSGSFSGGGGSFGGGGASGS 294 A +G ++ +P GG SG G SG + G+ + GGGS GG S Sbjct: 33 ASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAV 84
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.038 Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 47 VLLGPSGCGKSTLLKAIGG 65 VL G G GKSTL+ + G Sbjct: 600 VLEGTGGIGKSTLINTLVG 618
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.7 bits (233), Expect = 2e-24 Identities = 42/141 (29%), Positives = 63/141 (44%) Query: 2 RILLVEDTPEIGAAVTSRFERIGYAVDWEKDGRTASELIEVQTYDLIVLDVMLPNMDGFA 61 IL+ +D I + R GY V + T I DL+V DV++P+ + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLKHLRKRGLRTPVLVLTARSAVDDRIGALDLGADDYLIKPFDYRELEARARALLRRAAG 121 +L ++K PVLV++A++ I A + GA DYL KPFD EL L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 QSDNLLTLGPLVIDRAGRTAS 142 + L + GR+A+ Sbjct: 125 RPSKLEDDSQDGMPLVGRSAA 145
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.025 Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 21/100 (21%) Query: 364 LIHNALAHGARTR-----LMVRVERAAAHVAIVVWDDGPGIAAEAQQHLVSPFQKGDGSH 418 L+ N + HG ++++ + V + V + G ++ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 419 GSGLGLAIAAE-VAQAHGG--SLRFAGGAGDFSVRFEIPA 455 +G GL E + +G ++ + G + IP Sbjct: 310 STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 36.1 bits (83), Expect = 8e-05 Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 3/115 (2%) Query: 59 ALLPTDEELLLSRSSTALRLGDGTLGRSLIEKVLTLNPSNPDAMWRVGAGYEDAGDYRTA 118 + E L S + + G + + + L+ + +GA + G Y A Sbjct: 30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 89 Query: 119 IRFYAMALTIAPRNQYALLFSSTSNQGLRRFDEA---LKTADALVGLGPDEINLK 170 I Y+ + + ++ EA L A L+ + L Sbjct: 90 IHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELS 144 Score = 31.1 bits (70), Expect = 0.004 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 17/123 (13%) Query: 88 IEKVLTLNPSNPDAMWRVGAGYEDAGDYRTAIRFYAMALTIAPRNQYALLFSSTSNQGLR 147 I + ++ + ++ + +G Y A + + + + L Q + Sbjct: 25 IAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMG 84 Query: 148 RFDEALKTADALVGLGPDEINLKPYFDYQGNRLDFYFIALKNRARIHWMLGHLDRAEQDL 207 ++D A+ + + E P F + + A G L AE L Sbjct: 85 QYDLAIHSYSYGAIMDIKE----PRFPF-------------HAAECLLQKGELAEAESGL 127 Query: 208 NAA 210 A Sbjct: 128 FLA 130
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.9 bits (140), Expect = 2e-11 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 6/98 (6%) Query: 251 SEREINSLLAVDRNDLVIGATRSARRALGLSASALSRPVPAGDLIKGARAEGDDIDAAER 310 SE + + + +++ + ++ +P L + E Sbjct: 385 SEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYD------RVLAEMEY 438 Query: 311 AVLKRALARAGGNVSKAAKELDLSRATLHRKMKRLGLE 348 ++ AL GN KAA L L+R TL +K++ LG+ Sbjct: 439 PLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 35.3 bits (81), Expect = 5e-04 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 18/111 (16%) Query: 432 TATVRAGYLVTPEVLLYARGGAAWTRTSVTAVNAANGQSASAAFNRSGWTVGAGVEWMFA 491 T + GY +T ++ +Y R G R + + GVE+ Sbjct: 99 QLTAKLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSP-----VFAGGVEYAIT 153 Query: 492 RNWSAFAEYDYADFGTVTGRLPGAAAVTGGPDVVSLNTKIHTALVGVNYRF 542 + EY + T + A + PD +GV+YRF Sbjct: 154 PEIATRLEYQW------TNNIGDAHTIGTRPD-------NGMLSLGVSYRF 191
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.5 bits (76), Expect = 4e-04 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 15/93 (16%) Query: 68 GEPAIKGRLISAEEARLRELPPPPPDPEREKMERLRKLRLEKEEAEKLAAAARGGSAAHA 127 P++ + E AR+ E P PPP P E E +A ++ S Sbjct: 1006 DVPSVPSN--NEEIARVDEAPVPPPAPA-----------TPSETTETVAENSKQESKT-V 1051 Query: 128 ATRARGAADTTSRTGRAGAAKPARAAAAAPKTL 160 + A +TT++ A + A +T Sbjct: 1052 EKNEQDATETTAQNREV-AKEAKSNVKANTQTN 1083
>PF06580#Sensor histidine kinase Length = 349 Score = 36.8 bits (85), Expect = 9e-05 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 252 LIVTELVINSLKHAFPEDAANGLIVVSYESCGAGWTLSVSDNGTGKAQVNGRVKGGLGTG 311 ++V LV N +KH + G I++ TL V + G+ + K GTG Sbjct: 258 MLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK---NTKESTGTG 314 Query: 312 I 312 + Sbjct: 315 L 315
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 36.1 bits (83), Expect = 1e-04 Identities = 24/90 (26%), Positives = 33/90 (36%) Query: 2 TLLRLTYMLAVIAAATTAAHAQISLTPPTLQQPPADKPKPAERPTEKAADKPKPPAVTKK 61 TLL + AV+A + Q+ P Q PA+ +A P P V + Sbjct: 18 TLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPE 77 Query: 62 PAPAPAPTAKPAAPAPVASPQPPQPAATDP 91 P P P P AP + P+P P Sbjct: 78 PEPEPIPEPPKEAPVVIEKPKPKPKPKPKP 107 Score = 35.7 bits (82), Expect = 2e-04 Identities = 18/71 (25%), Positives = 25/71 (35%) Query: 22 AQISLTPPTLQQPPADKPKPAERPTEKAADKPKPPAVTKKPAPAPAPTAKPAAPAPVASP 81 + + P +P + PK A EK KPKP K P KP P + Sbjct: 70 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPF 129 Query: 82 QPPQPAATDPN 92 + PA + Sbjct: 130 ENTAPARPTSS 140 Score = 35.3 bits (81), Expect = 2e-04 Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 9/89 (10%) Query: 12 VIAAATTAAHAQISLTPPT-LQQPPADKPKPA-----ERPTEKAADKPKPPAV---TKKP 62 VI A +++ P L+ P A +P P E E + PK V KP Sbjct: 40 VIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 99 Query: 63 APAPAPTAKPAAPAPVASPQPPQPAATDP 91 P P P P +P + P Sbjct: 100 KPKPKPKPVKKVEQPKRDVKPVESRPASP 128
>ENTEROVIROMP#Enterobacterial virulence outer membrane protein signature. Length = 171 Score = 27.2 bits (60), Expect = 0.037 Identities = 8/41 (19%), Positives = 18/41 (43%) Query: 149 GRSTSTPAYAINGGVEFKPTSNISLSLGFSYAGQSSDRIDS 189 TS ++ G++F P N++L + + S + + Sbjct: 122 KHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGT 162
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1051 bits (2719), Expect = 0.0 Identities = 520/1034 (50%), Positives = 696/1034 (67%), Gaps = 5/1034 (0%) Query: 1 MPSFFIDRPIFAWVVALFICLIGAIAIPLLAVAQYPIIAPPSISISTSYPGASPENLYNS 60 M +FFI RPIFAWV+A+ + + GA+AI L VAQYP IAPP++S+S +YPGA + + ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTRLIEEELNGASGILNFESTSDSLGQVEITANFVPGTSTNDASVEVQNRLKRVEARLPR 120 VT++IE+ +NG ++ STSDS G V IT F GT + A V+VQN+L+ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 AVIQQGILVEEASAAVLQIITLQSTDGSLDEIGLGDFMIRNVLGEIRRIPGVGRATLYST 180 V QQGI VE++S++ L + S + + + D++ NV + R+ GVG L+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 ERSLRVWLDPNKLIGYGLTADDVTKAIGAQNAQVASGSIGAEPATTVQRTSALVLVKGQL 240 + ++R+WLD + L Y LT DV + QN Q+A+G +G PA Q+ +A ++ + + Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 DSPDEFGSIMLRANPDGSTVRLRDVARIEIGGLSYQFNTRLNGKPTAGLSVLLSPTGNAL 300 +P+EFG + LR N DGS VRL+DVAR+E+GG +Y R+NGKP AGL + L+ NAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 ATASAIEAKMKELSRFFPSNISYEIPYDITPVVKASIKRVLMTLVEAVVLVFVVMFLFLQ 360 TA AI+AK+ EL FFP + PYD TP V+ SI V+ TL EA++LVF+VM+LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NIRYTIIPTIVVPVALLGTCATLMLVGYSINMLTMFGMVLAVGILVDDAIVVVENVERIM 420 N+R T+IPTI VPV LLGT A L GYSIN LTMFGMVLA+G+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AEEGLSPKEATRKAMGQITGAIIGITLVLMAVFVPMAFFPGSVGIIYRQFSVTMVAAIGF 480 E+ L PKEAT K+M QI GA++GI +VL AVF+PMAFF GS G IYRQFS+T+V+A+ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SALLALSLTPALCATLLKPVQAGHGHARTGLFGWFNRFMDGSRNRYTSVVGGALTRTGRL 540 S L+AL LTPALCATLLKPV A H + G FGWFN D S N YT+ VG L TGR Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 MLIYAIFLVGLTYAFIQLPGGFLPVDDQGFITTDVQTPADSSYARTQAAVEAVEKYLAKR 600 +LIYA+ + G+ F++LP FLP +DQG T +Q PA ++ RTQ ++ V Y K Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 601 E--GIEDVTFLTGFSYAGQGVNTAQAFISLKDWSER-GKQDSAAALVADINRDLASLRDA 657 E +E V + GFS++GQ N AF+SLK W ER G ++SA A++ +L +RD Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 658 KITALQPPPIDNLGNSSGFSFRLQDRGQKGYAALTAAADQLIAAANASPV-LQKVYIEGL 716 + P I LG ++GF F L D+ G+ ALT A +QL+ A P L V GL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 717 PQGPQVNLMIDREKAGAFGVTFEDINNTISTNLGSTYVNDFPNRGRMQRVVVQADRISRM 776 Q L +D+EKA A GV+ DIN TIST LG TYVNDF +RGR++++ VQAD RM Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 777 NADDILNYSVKNARGQPVPFSSFATIQWAKGPSQIAGFNYYPAIRISGEARAGYTSGDAL 836 +D+ V++A G+ VPFS+F T W G ++ +N P++ I GEA G +SGDA+ Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 837 NEMERLAANLPRGFGYEWTGQSLQEKLSGSQAPLLLGLSALVVFLCLAALYESWTIPLAV 896 ME LA+ LP G GY+WTG S QE+LSG+QAP L+ +S +VVFLCLAALYESW+IP++V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 897 LLTVPLGILGAVVAANLRGLSNDVYFTVALITIIGLAAKDAILIIEFAKDL-RAHGKPLV 955 +L VPLGI+G ++AA L NDVYF V L+T IGL+AK+AILI+EFAKDL GK +V Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 956 EATIEACSLRFRPIIMTGLAFVCGVLPMSMATGAGGASQQALGTNVMGGMIAVVVLALLM 1015 EAT+ A +R RPI+MT LAF+ GVLP++++ GAG +Q A+G VMGGM++ +LA+ Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1016 VPVFFVSVQRVLAG 1029 VPVFFV ++R G Sbjct: 1021 VPVFFVVIRRCFKG 1034 Score = 93.0 bits (231), Expect = 3e-21 Identities = 87/513 (16%), Positives = 182/513 (35%), Gaps = 34/513 (6%) Query: 540 LMLIYAIFLVGLTYAFIQLPGGFLPVDDQGFITTDVQTPADSSYARTQAAVEAVEKYLAK 599 +L + + G A +QLP P ++ P + + +E+ + Sbjct: 13 WVLAIILMMAGA-LAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNMNG 71 Query: 600 REGIEDVTFLTGFSYAGQGVNTAQAFISLKDWSERGKQDSAAALVADINRDLASLRDAKI 659 + + ++ + I+L + G D A V + L Sbjct: 72 IDNLMYMS--------STSDSAGSVTITLT--FQSGT-DPDIAQV-QVQNKLQLATPLLP 119 Query: 660 TALQPPPIDNLGNSSGFSFRLQDRGQKGYAALTAAADQLIAAANASPVLQKVYIEGLPQ- 718 +Q I +SS + +D A+N L ++ G Q Sbjct: 120 QEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDY--VASNVKDTLSRLNGVGDVQL 177 Query: 719 -GPQVNLMI--DREKAGAFGVTFEDINNTISTN---LGSTYVNDFPNRGRMQRVVVQADR 772 G Q + I D + + +T D+ N + + + + P Q + Sbjct: 178 FGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQ 237 Query: 773 ISRMNADDILNYSVK-NARGQPVPFSSFATIQW-AKGPSQIAGFNYYPA----IRISGEA 826 N ++ +++ N+ G V A ++ + + IA N PA I+++ A Sbjct: 238 TRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGA 297 Query: 827 RAGYTSGDALNEMERLAANLPRGFGYEW---TGQSLQEKLSGSQAPLLLGLSALVVFLCL 883 A T+ ++ L P+G + T +Q + L ++VFL + Sbjct: 298 NALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEA--IMLVFLVM 355 Query: 884 AALYESWTIPLAVLLTVPLGILGAVVAANLRGLSNDVYFTVALITIIGLAAKDAILIIE- 942 ++ L + VP+ +LG G S + ++ IGL DAI+++E Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 943 FAKDLRAHGKPLVEATIEACSLRFRPIIMTGLAFVCGVLPMSMATGAGGASQQALGTNVM 1002 + + P EAT ++ S ++ + +PM+ G+ GA + ++ Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 1003 GGMIAVVVLALLMVPVFFVSVQRVLAGDREKPQ 1035 M V++AL++ P ++ + ++ + + + Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHENK 508
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.6 bits (121), Expect = 5e-09 Identities = 36/217 (16%), Positives = 68/217 (31%), Gaps = 23/217 (10%) Query: 40 PGRIAP-TRVSDVRPRVSGIVVERLFRQGSEVRAGDPLYRIDPKPFEVEIMSGRAALAKA 98 G++ R +++P + IV E + ++G VR GD L ++ E + + +++L +A Sbjct: 87 NGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146 Query: 99 EAVHERAVQQARRINLLFKERAAPEVEHEKAIASEREAAADVEARKADLA-----RAQLN 153 R +R I L E SE E K + + Q Sbjct: 147 RLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206 Query: 154 LDYATVRAPIDGIVGAAQVSEGAIAVQNETS-----------------LATIQQLDPIYA 196 L+ RA ++ E V+ L + Sbjct: 207 LNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVN 266 Query: 197 DFTQSVSELNRLRRAFESGDLDQIAPDAIKVRLVLDD 233 + S+L ++ S + + +LD Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK 303 Score = 34.8 bits (80), Expect = 5e-04 Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 34/210 (16%) Query: 87 EIMSGRAALAKAEAVHERAVQQARRINLLFKERAAPEVEHEKAIASEREAAADVEARKAD 146 E+ ++ L + E+ A ++ + + LFK ++ R+ ++ + Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKL---------RQTTDNIGLLTLE 317 Query: 147 LARAQLNLDYATVRAPIDGIVGAAQV-SEGAIAVQNETSLATIQQLDPIYADFTQSVSEL 205 LA+ + + +RAP+ V +V +EG + ET + + + D + Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNK-- 375 Query: 206 NRLRRAFESGDLDQIAP-DAIKVRLVLDDGTSY-SIPGK--LLFSDAKVDAATGQVTL-- 259 D+ I +++ T Y + GK + DA D G V Sbjct: 376 ----------DIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVI 425 Query: 260 ------RGEFANPKRELLPGMYVRVRIEQG 283 N L GM V I+ G Sbjct: 426 ISIEENCLSTGNKNIPLSSGMAVTAEIKTG 455
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 81.9 bits (202), Expect = 1e-19 Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 20/135 (14%) Query: 215 VVGDRFVFQSEVFFDTGQATLLPEGQQELNSVATALVDLDKQIPAEISWVLRVDGHTDVR 274 V F +S+V F+ +ATL PEGQ L+ + + L +LD + + + V G+TD Sbjct: 210 VQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGS-----VVVLGYTD-- 262 Query: 275 PINSPVFKSNWELSSARAISVVQYLISLGVPAQRLVAAGFAEFQPLDPGNTEDAFRR--- 331 I S + N LS RA SVV YLIS G+PA ++ A G E P+ GNT D ++ Sbjct: 263 RIGSDAY--NQGLSERRAQSVVDYLISKGIPADKISARGMGESNPV-TGNTCDNVKQRAA 319 Query: 332 -------NRRIELKL 339 +RR+E+++ Sbjct: 320 LIDCLAPDRRVEIEV 334
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 46.9 bits (111), Expect = 3e-09 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 8/93 (8%) Query: 58 VAETDGALAGFVTIDAT----GYLDQLVVAPQHWGSPLATRLVEA----AKARSPGGITL 109 + + G + I + ++ + VA + + T L+ AK G+ L Sbjct: 69 LYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLML 128 Query: 110 LVNTDNARAIRFYKRSGFVEAGADVNPTSGRPV 142 N A FY + F+ D S P Sbjct: 129 ETQDINISACHFYAKHHFIIGAVDTMLYSNFPT 161
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 39.8 bits (93), Expect = 2e-06 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 5/138 (3%) Query: 2 TLDLARLLLFPALMAFAAASDLFTMTISNRVSFALLAGFLVLAPLSGM-GMQDMLSHVGA 60 LL ++ DL M + ++++ LL G L+ L G + D + A Sbjct: 131 GWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMA 190 Query: 61 GALLLVVAFACFAF----GWIGGGDAKVASAAALWFGFAHLMNYLLYASIFGGVLTLLLM 116 G L+L + F +G GD K+ +A W G+ L LL +S+ G + + L+ Sbjct: 191 GYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLI 250 Query: 117 QFRQWPLPYMLAGQPWLA 134 R + P+LA Sbjct: 251 LLRNHHQSKPIPFGPYLA 268
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 117 bits (295), Expect = 3e-30 Identities = 69/273 (25%), Positives = 116/273 (42%), Gaps = 28/273 (10%) Query: 188 KVVNSITVRGRDQVMLKVTVAEVQRSVVKQLGIDLSGQ-----------LNYGTAV---- 232 +V+ + +R R QV+++ +AEVQ + LGI + + L TA+ Sbjct: 335 RVIAQLDIR-RPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGAN 393 Query: 233 VKFANSNPFTAYGSNLVSNNAINASFGS-SVQATLRAMENAGVIRTLAEPNLTAISGESA 291 + ++ S L S N I A F + L A+ ++ LA P++ + A Sbjct: 394 QYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEA 453 Query: 292 TFIAGGEFPVPAGYSCDPTTHVCTTQISFKKFGISLNFTPVVLAEGRISLRVMTEVSELS 351 TF G E PV G ++ T + K GI L P + + L + EVS Sbjct: 454 TFNVGQEVPVLTGSQTTSGDNIFNT-VERKTVGIKLKVKPQINEGDSVLLEIEQEVS--- 509 Query: 352 NENSITLSQAVTSSTVNSLTVPSIKTRRAETTLEIPSGGAMAMAGLIQQQTKQAISGMPG 411 S+ + + TSS + + TR + + SG + + GL+ + +P Sbjct: 510 ---SVADAASSTSSDLG----ATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPL 562 Query: 412 LMQLPVLGTLFRSRDYVNNQTELMVLVTPFVVR 444 L +PV+G LFRS ++ LM+ + P V+R Sbjct: 563 LGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIR 595
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.0 bits (83), Expect = 3e-04 Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 12/138 (8%) Query: 64 GGMAAAIEAYRSAPTPNVIILETDARSDILAGLDQLATV--CDPGTRVVVIGRVNDVTLY 121 A + ++++ TD D L + P V+V+ N Sbjct: 34 SNAATLWRWIAAGD-GDLVV--TDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTA 90 Query: 122 RELVRRGVSDYVLSPVTPIDVVRSICNLFSAPEAKAVGRIIAVVGAKGGVGASTIAHNVA 181 + +G DY+ P +++ I + P+ + VG S Sbjct: 91 IKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSA------ 144 Query: 182 WAIARDLSMDSVVADLDL 199 A+ + + + DL Sbjct: 145 -AMQEIYRVLARLMQTDL 161
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 29.0 bits (65), Expect = 0.029 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%) Query: 164 IKAGLPLFESIKVVAADAPEP-LRSEFLAIIETQAIGMPLGEACARLYERMPLPEANFFG 222 + A +PL E++ VA + +P L A+ G L +A + P + Sbjct: 81 VAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADA----MKCFPGSFERLYC 136 Query: 223 IVVAIQQKSGGNLSEALGNLSKVLRDRKKMAEKI-QAM 259 +VA + S G+L L L+ R++M +I QAM Sbjct: 137 AMVAAGETS-GHLDAVLNRLADYTEQRQQMRSRIQQAM 173
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 30.7 bits (69), Expect = 0.004 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Query: 167 PDNPDWRLLSVQGTALDQMGRHDEARRYYESALKIVPGEPSVLSNLGLSYMLTRELPKAE 226 + + L G MG++D A Y + EP + + EL +AE Sbjct: 67 HYDSRFFL--GLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAE 124 Query: 227 EVL 229 L Sbjct: 125 SGL 127
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 3e-19 Identities = 36/142 (25%), Positives = 63/142 (44%) Query: 5 SSVRVLVVEDDPQLGIWLRDALATAFGSSDIVTTLDEGRAAIAVRTFELVVIDRGLPDGD 64 + +LV +DD + L AL+ A I + IA +LVV D +PD + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 65 GLALLPDLRQQKPSPATVVLTALDDPADIARALDEGADDYVAKPFEPIELVARARAVLRR 124 LLP +++ +P +V++A + +A ++GA DY+ KPF+ EL+ L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 125 LYLDRGAVVSIANLSYDIVNRA 146 + + +V R+ Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRS 143
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 64.2 bits (156), Expect = 9e-15 Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 27/187 (14%) Query: 47 PIQPLLPAA--AARVPAHQP---NRRLRSLSHAWSTKQ------RAPQIGDIVTMTVNIA 95 P PL+ A A VP P +S Q R IGD +T+ + Sbjct: 26 PSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQEN 85 Query: 96 ENPGDMSTQGGTNSNRHADELPDTGGAVAGRR-----------ADASSSRDTAGRTTVGQ 144 + S N++R D + G R +AS G+ Sbjct: 86 VSA---SKSSSANASR--DGKTNFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANA 140 Query: 145 AELKRMSMAAVVTRVSPDGGLVVEGRRTMQIDGEIVDLEVSGVVPADSLRVDHSIDASKM 204 + ++ V +V +G L V G + + I+ + SGVV ++ +++ ++++ Sbjct: 141 SNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQV 200 Query: 205 KQMQISY 211 +I Y Sbjct: 201 ADARIEY 207
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 27.5 bits (60), Expect = 0.003 Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 35 YDPGYGDGYADGYVSGYKDGYSDGAWSG 62 ++ GY G A+G G+K GY +G G Sbjct: 52 HEQGYQAGIAEGRQQGHKQGYQEGLAQG 79
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 55.3 bits (133), Expect = 2e-11 Identities = 49/188 (26%), Positives = 67/188 (35%), Gaps = 33/188 (17%) Query: 14 YVGGHLG------GEFSGASGAFGRESRFLGGLQFGADYQFAPNWVLGAEGQYSWLAGNG 67 Y G LG F +G G FG YQ P +G E Y WL G Sbjct: 29 YTGAKLGWSQYHDTGFINNNGPTHENQLGAGA--FGG-YQVNPY--VGFEMGYDWL---G 80 Query: 68 QTSSLGRRELTRDRNGIGGLTGRLGYTWGAGL-LYVKGGYAYQDRSYGVRSRAGAPVAFA 126 + G E + LT +LGY L +Y + G R+ + V Sbjct: 81 RMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMV------WRADTKSNVYGK 134 Query: 127 VRDNKSGYTVGAGLEYMFAPNWSTKLEYQY-YDFGTARFVAPSPGRLVRNGTFDSTLHTV 185 D G+EY P +T+LEYQ+ + G A + P + Sbjct: 135 NHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRP-----------DNGML 183 Query: 186 SVGVNYRF 193 S+GV+YRF Sbjct: 184 SLGVSYRF 191
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 129 bits (325), Expect = 6e-34 Identities = 126/605 (20%), Positives = 220/605 (36%), Gaps = 72/605 (11%) Query: 3 TNAFNTATAGLQTLQVAIGTVSQNVANSGVAGYTRRVVSTESAGPG-------NSGVAVA 55 ++ N A +GL Q A+ T S N+++ VAGYTR+ A +GV V+ Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 56 RIDRTFDEMALKQMRLESAHAAYASAKADILAQIDKLSGKPADSSALDARLNGLAKSLLA 115 + R +D Q+R ++ +A+ + +++ID + +S+L ++ SL Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLS--TSTSSLATQMQDFFTSLQT 118 Query: 116 LASNGASASSRSTVVDAASVLADKIRGMADALQAMRDGANKRLAAEVSAADGLLTSIADL 175 L SN ++R ++ + L ++ + L+ N + A V + IA L Sbjct: 119 LVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASL 178 Query: 176 N---IKATTVTDDATRVGILDRRDQQITELARYMEVKSIRQRDGGVTLMTASGLTLVERG 232 N + T V A+ +LD+RDQ ++EL + + V+ Q G + A+G +LV+ Sbjct: 179 NDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGS 238 Query: 233 AATKLSFIDRSPATGGGAIVATLPGGVGLELDASAVSSGSIAANLEIRDAILPRTQRRLD 292 A +L+ + S + +E+ +++GS+ L R L +T+ L Sbjct: 239 TARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLG 298 Query: 293 DLAFGLAQAFTNTTVTAGRRGAGFDLRLDDVAQMQPGNTITIAVGSGDTQRTIVLVASNL 352 LA A+AF NT A GFD D + VL + Sbjct: 299 QLALAFAEAF-NTQHKA-----GFDANGD------------AGEDFFAIGKPAVLQNTKN 340 Query: 353 ASKSLDVAQPPGRVQTFAIPSAPATSQAYAAALSTAISAAAPGLTVTSGGSNSITVGGAG 412 DVA A+ + A+ TVT + + G Sbjct: 341 KG---DVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLE 397 Query: 413 IQSVTASVTQPKTAGDLSGGYPKLAVFVDGAANALVNGAMDDGPQRAGLAARLAVNTALK 472 + T D + + ++A+VN + Sbjct: 398 LT-----FTGTPAVND--------SFTLKPVSDAIVNMDVL------------------I 426 Query: 473 ADTSALVAVGSSPSALSRPQALYQALTSEKQGFSSPNGSSNRSPAMTTVISFAQDVVAAA 532 D + + + S + L + Q S G + + +V+ Sbjct: 427 TDEAKIAMASEEDAGDSDNRNGQALL--DLQSNSKTVGGA------KSFNDAYASLVSDI 478 Query: 533 GSEAAASATVADQQNVAKANADAWFSKGASVNIDEEMSRLIALQTAYAANARVLTAAREM 592 G++ A T + Q + VN+DEE L Q Y ANA+VL A + Sbjct: 479 GNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAI 538 Query: 593 IDLLL 597 D L+ Sbjct: 539 FDALI 543
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 31.9 bits (72), Expect = 0.007 Identities = 12/40 (30%), Positives = 20/40 (50%) Query: 424 EASNSDVAGEFSKLIATQQAYSANVKVMTTSQQMMSDLLN 463 S ++ E+ L QQ Y AN +V+ T+ + L+N Sbjct: 505 SISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 29.5 bits (66), Expect = 0.035 Identities = 11/34 (32%), Positives = 17/34 (50%) Query: 4 STALLTAFSGMKAQSYAMANISGNIANTQTPGYK 37 S+ + A SG+ A A+ S NI++ GY Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYT 34
>FLAGELLIN#Flagellin signature. Length = 507 Score = 47.7 bits (113), Expect = 9e-08 Identities = 54/365 (14%), Positives = 94/365 (25%), Gaps = 6/365 (1%) Query: 214 TNDGRLTFTSTLTGSDAKLTISGGGATNTVDVGFGTGALTAVAASGIDATDGSAKASVTG 273 NDG L + G + G + +G D A Sbjct: 149 ANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVD 208 Query: 274 AAIGALGTASNFDLTAGDASITVQLGNGLTKTINLNKTADAALGVATLKAQDIAAAINRQ 333 GA+ T + + G T N D + A AI Sbjct: 209 VNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGA 268 Query: 334 LNADTGISGKVIATYDNAAGTVSLRTTASGGDQKLTVTSAAASTKDIGFGTAGDATKART 393 + T + + + DI G A Sbjct: 269 IKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQ 328 Query: 394 AAGAGATAANGTNQRAALAQQFNELLNQITMAAQDARFQGANLLYRTGSDPKENTLHMTF 453 ++ T+ + A + + + Sbjct: 329 SSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTA------NAA 382 Query: 454 NEKDTSYLDIKGVKFDASGLGITQSSGNFATNDEVKTALSQLMNASSTLRSQASTFGSNL 513 +K T + ASG+ + A L+ + +A S + + S+ G+ Sbjct: 383 GDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQ 442 Query: 514 TVIQNRQAFTKNMINILDVGANNLTIADLNEETANQNALSLRNSLGISALSLANQAQQGI 573 + N + L+ + + AD E +N + + G S L+ ANQ Q + Sbjct: 443 NRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNV 502 Query: 574 LQLLR 578 L LLR Sbjct: 503 LSLLR 507