>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.2 bits (68), Expect = 0.009 Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 2/92 (2%) Query: 89 LNSLPGPALTATDVAQRLRAIWEEPWTSYPKEELQAGCRALYDAEKAAGTEMRAIIGALE 148 L P + + RL ++ +E ++++ ++ Q D ++A + A I E Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK--ELNLDKKRAERLTVLARINRYE 227 Query: 149 EFLEVEEERLRQEQNEAYQQFREQDRIRRQQR 180 VE+ RL + ++Q + + Q+ Sbjct: 228 NLSRVEKSRLDDFSSLLHKQAIAKHAVLEQEN 259
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 58.0 bits (140), Expect = 5e-11 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 14/116 (12%) Query: 569 ITFELGSWDISPDQASKLQAIADGLNRSISRNPREVFLIEGHTDATGNDTDNLSLSDRRA 628 + F + P+ + L + L+ ++ V + G+TD G+D N LS+RRA Sbjct: 221 VLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVV--VLGYTDRIGSDAYNQGLSERRA 278 Query: 629 ESAAALLTQQFAVPAENLTSQGYGEQY---LKVQSDGPER--------QNRRVTVR 673 +S L + +PA+ ++++G GE + +R +RRV + Sbjct: 279 QSVVDYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 28.2 bits (63), Expect = 0.014 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 19/88 (21%) Query: 26 GSFNPPHEAH-----RAISRFALTRLKLDRIWWLVSPGNPLKDVSGLRELDARAA-AAQA 79 GSF+P H R F D+++ V NP K + + R A+A Sbjct: 7 GSFDPITFGHLDIIERGCRLF-------DQVYVAVL-RNPNK--QPMFSVQERLEQIAKA 56 Query: 80 VADDPRIQV---SCLEAAIGTRYTADTI 104 +A P QV L + A I Sbjct: 57 IAHLPNAQVDSFEGLTVNYARQRQAGAI 84
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 39.8 bits (93), Expect = 1e-05 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 8/107 (7%) Query: 136 VPVINENDTVATNEIRYGDNDRLAARVATMASADLLILLSDIDGLYTAPPGSNPDAKLIP 195 VPVI E+ + E D D ++A +AD+ ++L+D++G + + Sbjct: 197 VPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAALY--YGTEKEQWLR 253 Query: 196 EVESVTAEIESMAGAAGSELSRGGMRTKIEAA-KIATSAGTHMLIAS 241 EV+ E+ G M K+ AA + G +IA Sbjct: 254 EVK--VEELRKYYEE--GHFKAGSMGPKVLAAIRFIEWGGERAIIAH 296
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.8 bits (134), Expect = 7e-12 Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 8/156 (5%) Query: 1 MGKRAENSAAIKERLYVAAAEIVAQVGFAGASVARITDKAGIAQGTFYNYFETREAIFEE 60 K + + ++ + A + +Q G + S+ I AG+ +G Y +F+ + +F E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 LVPIFGKKLRGHIRSRVGDTF-DFYERERIAFDAFFEFLHGNRFFARVLNEAEIFTPAPH 119 + + + D R E R L IF Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTV--TEERRRLLMEIIFHKCEF 119 Query: 120 HDYFESILKGYRAELARASREGQIRKLSASEVEVIS 155 + + R ++ + I Sbjct: 120 VGEMAVV-----QQAQRNLCLESYDRIEQTLKHCIE 150
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.5 bits (66), Expect = 0.016 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 15/45 (33%) Query: 216 AADLA------RQSGTLPVDRAMVEVMANARHLAHVQLVNGLKPG 254 AA+LA + S +PVD V+ +V+ NG KPG Sbjct: 520 AANLAAYYSKSQNSSNVPVDYTEVK---------NVKKPNGAKPG 555
>AEROLYSIN#Aerolysin signature. Length = 493 Score = 30.8 bits (69), Expect = 0.009 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Query: 101 TWMGTHLLDPYRSLDRIAADR-PIDRAKTPLEVNVVALDWKWLFIYPEYGIASLNELAAP 159 W T ++ PY+ D+ ++ R D+ P EV W W + + G++++ A Sbjct: 361 NWNHTFVIGPYK--DKASSIRYQWDKRYIPGEVKW----WDWNWTIQQNGLSTMQNNLAR 414 Query: 160 VDRPINFRIT 169 V RP+ IT Sbjct: 415 VLRPVRAGIT 424
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 101 bits (252), Expect = 2e-27 Identities = 24/117 (20%), Positives = 52/117 (44%) Query: 6 SLIVVEDDAGFARTLKRSFERRGYEVVHASTIEDVRDALDERSFGYAVVDLKLGIASGLA 65 +++V +DDA L ++ R GY+V S + + V D+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 CVELLHAQDPEMLIVVLTGFASIATAVEAIKLGACHYLAKPSNTDDIEAAFRKAEGN 122 + + P++ ++V++ + TA++A + GA YL KP + ++ +A Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Score = 47.9 bits (114), Expect = 5e-09 Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 121 GNADIALGSQPTSFKTLEWERIHQTLIDSEFNISEAARRLGMHRRTLARKLEK 173 G+A G +E+ I L + N +AA LG++R TL +K+ + Sbjct: 420 GDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.6 bits (82), Expect = 0.001 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 9/66 (13%) Query: 484 AASAKIDSA--------PDGAVAITAPLQGTVVA-ITVAEGDVVRPGQQLAVLESMKMEH 534 + +++ G P++ ++V I V EG+ VR G L L ++ E Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA 134 Query: 535 LVIAEQ 540 + Q Sbjct: 135 DTLKTQ 140 Score = 31.0 bits (70), Expect = 0.030 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Query: 486 SAKIDSAPD--GAVAITAPLQGTVVAITV-AEGDVVRPGQQLAVL 527 + ++ + A I AP+ V + V EG VV + L V+ Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVI 359
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.022 Identities = 19/70 (27%), Positives = 32/70 (45%) Query: 103 AAFGAVLIIALGWADVRSYALPVAGITMAFVSVFMLLAVAGRSANLLLLILAGLAISSLA 162 A L++ L ++R+ +P + + + F +LA G S N L + LAI L Sbjct: 347 AIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLV 406 Query: 163 GAATALVMNL 172 A +V N+ Sbjct: 407 DDAIVVVENV 416
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.006 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 7 LVARNLGVALSGREVLHGLSLDLTRGHLVALVGPNGAGKTTLLRALAGL 55 LV + + + R + G D + V L G G GK+TL+ L GL Sbjct: 575 LVGKYILMGHVARVMEPGCKFD----YSVVLEGTGGIGKSTLINTLVGL 619
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 29.0 bits (65), Expect = 0.018 Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 8/35 (22%) Query: 225 SRCPHCGHRGFDVTERLPGLP-------CAWCGEP 252 S CPHC H E +P L C C P Sbjct: 72 SCCPHCNHP-ITALENIPLLSWLWLRGRCRGCQAP 105
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 30.1 bits (68), Expect = 0.009 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 11/53 (20%) Query: 1 MRVLVVG-AGAIGGYFGGRLLQVGRDVTFL----------VRPRRAEELARDG 42 M+ LV G AG IG + RLL+ G V + ++ R E LA+ G Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPG 53
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 31.3 bits (70), Expect = 0.010 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 415 PPNAVIHVVGTDSITPDRPMII--LARDTTTELRVLVDSNSNQELA--------KSTPVT 464 PP+ ++ V S T D PM + AR TT L V+ + A +T Sbjct: 338 PPSVNLNAVAKASGTVDLPMRLTNEARGNTTTLSVVSTDGVSVPKAVPVRMAAYNATTGL 397 Query: 465 FHVTDIGLGEVATAKDVFVTP 485 + VT A + TP Sbjct: 398 YEVTVPSTTAEAPPLILTWTP 418
>PF03944#delta endotoxin Length = 633 Score = 26.2 bits (57), Expect = 0.011 Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 4 PPASKAFIIEVNSRAAGIVVRDGRGFRFHAATDDFTGL 41 P ++A+++ V++R I G H A +D+TG Sbjct: 457 PGGARAYMVSVHNRKNNIHAVHENGSMIHLAPNDYTGF 494
>PF06580#Sensor histidine kinase Length = 349 Score = 38.3 bits (89), Expect = 6e-05 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query: 383 LDITVDAKTAVSLGLVFHELTTNAVKYG-ALSVPGGKIAVRQVGRSDDGALMIEWQEHDG 441 I ++ L N +K+G A GGKI ++ G D+G + +E E+ G Sbjct: 244 NQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLK--GTKDNGTVTLE-VENTG 300 Query: 442 PLVTP--PESSGFGQALISRSL-----GSGGATLEFRPTGVICKIAIP 482 L ES+G G + L L + V + IP Sbjct: 301 SLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 36.7 bits (85), Expect = 1e-04 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 35/163 (21%) Query: 51 KLAITGASGAIGLPLARAFLAKGAQLLLV-----GRDPN----RLREL------FSGAES 95 K +TGA+G IG +++ L G Q++ + D + RL L F + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 96 CSYEEMAQ--RLEGYDGLLHLAVLNNNVEATRED---YVKANVDLTNAALLAAQQAGVDR 150 E M ++ + V + E+ Y +N+ L + + Sbjct: 62 ADREGMTDLFASGHFERVFISPH-RLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 151 FVYVST-------------TQALESRNFSNYASSKRIASEHVA 180 +Y S+ T S YA++K+ A+E +A Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKK-ANELMA 162
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 37.1 bits (86), Expect = 5e-05 Identities = 31/161 (19%), Positives = 56/161 (34%), Gaps = 9/161 (5%) Query: 8 RVLVLGATGMLGNAVF-RFFSGSDE---FEAFATARSSTLLDRFAEAVRSKL--ILGVDV 61 + LV GA G +G V R + + +L E + +D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 62 ENMDVMARVFANHRPDVVINCIGVVKQLSSAKDPLVSIPINSMLPHRLSALCALSG-ARL 120 + + M +FA+ + V + S ++P N + C + L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 121 IHISTDCVFNG-ERGAYREDDIPDAN-DLYGRTKFLGEVDA 159 ++ S+ V+ + + DD D LY TK E+ A Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMA 162
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 60.2 bits (146), Expect = 2e-12 Identities = 43/240 (17%), Positives = 81/240 (33%), Gaps = 28/240 (11%) Query: 6 TLLITGGTGSFGNAVLHRFLKSDFQEIRIFS----RDEKKQEDMRIALKDDRVKFYIGDV 61 L+TG G G V R L++ Q + I + D ++ L +F+ D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 62 RDYEAVDD--AINGVDYVFHAAALKQVPSCEFYPMEAIRTNVLGAENVMRAAVNRGVSRC 119 D E + D A + VF + V P +N+ G N++ + + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 120 VVLST---------------DKAVYPINAMGMSKAMMEKVMVAKSRLCQPGQTILCATRY 164 + S+ D +P++ +K E + S L T L R+ Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL---RF 178 Query: 165 GNVMGSRGS---VIPLFIDQLQQRKPLTI-TDPSMTRFLMSLEESVDLVLYAFQNARAGD 220 V G G + F + + K + + M R +++ + ++ D Sbjct: 179 FTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHAD 238
>PF06776#Invasion associated locus B Length = 214 Score = 280 bits (718), Expect = 4e-99 Identities = 214/214 (100%), Positives = 214/214 (100%) Query: 1 MPPLWCRHCRISRRPVTNHAVPALKAIQMGPAELSPMLASCRRLARRNGARLMLAGAMAI 60 MPPLWCRHCRISRRPVTNHAVPALKAIQMGPAELSPMLASCRRLARRNGARLMLAGAMAI Sbjct: 1 MPPLWCRHCRISRRPVTNHAVPALKAIQMGPAELSPMLASCRRLARRNGARLMLAGAMAI 60 Query: 61 ALSFGWSDRADAQGAVRSVHGDWQIRCDTPPGAKAEQCALIQSVVAEDRSNAGLTVIILK 120 ALSFGWSDRADAQGAVRSVHGDWQIRCDTPPGAKAEQCALIQSVVAEDRSNAGLTVIILK Sbjct: 61 ALSFGWSDRADAQGAVRSVHGDWQIRCDTPPGAKAEQCALIQSVVAEDRSNAGLTVIILK 120 Query: 121 TADQKSKLMRVVAPLGVLLPSGLGLKLDNVDVGRAGFVRCLPNGCVAEVVMDDKLLGQLR 180 TADQKSKLMRVVAPLGVLLPSGLGLKLDNVDVGRAGFVRCLPNGCVAEVVMDDKLLGQLR Sbjct: 121 TADQKSKLMRVVAPLGVLLPSGLGLKLDNVDVGRAGFVRCLPNGCVAEVVMDDKLLGQLR 180 Query: 181 TAKTATFIIFETPEEGIGFPLSLNGIGEGYDKLP 214 TAKTATFIIFETPEEGIGFPLSLNGIGEGYDKLP Sbjct: 181 TAKTATFIIFETPEEGIGFPLSLNGIGEGYDKLP 214
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 28.0 bits (62), Expect = 0.020 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%) Query: 8 SAGPA-ALAPRGHGLLLRSPQMADYPQWAELRDR 40 SA P P +G + +S Q +Y DR Sbjct: 36 SAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDR 69
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 136 bits (345), Expect = 7e-40 Identities = 74/344 (21%), Positives = 136/344 (39%), Gaps = 42/344 (12%) Query: 5 ILVTGGAGYIGSHMTLALQAAGERPLVIDDLSAG---------LRSAVPDGVPLFAGSVG 55 LVTG AG+IG H++ L AG + + ID+L+ L G + Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 56 DAALVGDIMDRYPIAAIIHFAASVVVPESVARPLDYYRNNTANARTLIDCAVQRKVPHIV 115 D + D+ + + V S+ P Y +N +++ K+ H++ Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLL 122 Query: 116 FSSTAAVYGEPDRTPISEGQST-QPINPYGRSKLMVEWMLDDVARAHPLSYAALRYFNVA 174 ++S+++VYG + P S S P++ Y +K E M + + L LR+F V Sbjct: 123 YASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVY 182 Query: 175 GADPDGRAGQSSPNATHLIKIAVQAALGKRDGLDVYGTDYPTADGSCVRDYVHVSDLVAA 234 G P GR + T + GK +DVY G RD+ ++ D+ A Sbjct: 183 G--PWGRPDMALFKFTKAML------EGKS--IDVYN------YGKMKRDFTYIDDIAEA 226 Query: 235 HIDALRYLRAGNPSV---------------ICNIGYANGYSVLDVIEVVKRVSGVDFDVR 279 I + + + NIG ++ ++D I+ ++ G++ Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKN 286 Query: 280 IKGRRPGDPAALVASNELAKSLLGWRPRHDDLETIVRHALAWER 323 + +PGD A + ++G+ P ++ V++ + W R Sbjct: 287 MLPLQPGDVLETSADTKALYEVIGFTPE-TTVKDGVKNFVNWYR 329
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 29.6 bits (66), Expect = 0.014 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 13/113 (11%) Query: 82 GDGRVVEGHALGFDAESGFGLVQALGPID--------LPPLALGNSGAAKAGDRVVIAGA 133 +G + E +V+ P + + P + N+ + + + G Sbjct: 144 PNGGFTAEQITKYSGEGDLAIVK-FSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGY 202 Query: 134 GGRTRSVAGRIATRQEFAGYWEYLLDDAIFTEPSHPNWGGAGLISATGELIGI 186 G + VA ++ + + + T + G+ + + E+IGI Sbjct: 203 PGD-KPVATMWESKGKITYLKGEAMQYDLSTTGGN---SGSPVFNEKNEVIGI 251
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.8 bits (147), Expect = 4e-13 Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 41/274 (14%) Query: 3 LHGKTLHGKKGLVVGIANADSIAFGCARAFRDAGAEL-AVTYLNDKAKPYVGPLAEQLQS 61 ++ K + GK + G A I AR GA + AV Y +K + V L + + Sbjct: 1 MNAKGIEGKIAFITGAAQG--IGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARH 58 Query: 62 PIVVPCDVREPGQLEAVFAQIGERWGRLDFL-----------LHSIAFAPKDDLQGRVVD 110 P DVR+ ++ + A+I G +D L +HS+ ++ + Sbjct: 59 AEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSL---SDEEWEATFSV 115 Query: 111 CSQAGFAMAMDVSCHSFIRMARLAEPLMPDGGCLLTVSFYGSDKVVEDYNLMGPVKAALE 170 S F + VS ++ R G ++TV + KAA Sbjct: 116 NSTGVFNASRSVS--KYMMDRR--------SGSIVTVGSNPAGVPRTSMAAYASSKAAAV 165 Query: 171 SSVRYMAAELAPKRIRVHALSPGPLKTR-----------AASGIARFDELLERTRARAPA 219 + + ELA IR + +SPG +T A I LE + P Sbjct: 166 MFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGS---LETFKTGIPL 222 Query: 220 HNLVSIEDVGNVATFLVGDGASALTGNIEYIDAG 253 L D+ + FLV A +T + +D G Sbjct: 223 KKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGG 256
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 371 bits (955), Expect = e-129 Identities = 151/401 (37%), Positives = 227/401 (56%), Gaps = 16/401 (3%) Query: 5 LLVLNAGSSSVKFALYAAHAEPTVEQLICEGGIGSIGHRPHFKVVDRDGGVVHDDYLAEG 64 +LV+N GSSS+K+ L + + + + E IG + D Sbjct: 3 ILVINCGSSSLKYQLIESKDGNVLAKGLAER-IGINDSLLTHNANGEKIKIKKDMK---- 57 Query: 65 ASHDDAIATLIGWIEQR-----FSDQRLAAVGHRVVHGGDLFDAPVRIDPDVVAKLRRFT 119 H DAI ++ + + AVGHRVVHGG+ F + V I DV+ + Sbjct: 58 -DHKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCI 116 Query: 120 TLAPLHQPHNIAAIEALAKQHPTLPQVACFDTAFHHRLPPVATWFALPRELTAQ-GIRRY 178 LAPLH P NI I+A + P +P VA FDTAFH +P A + +P E + IR+Y Sbjct: 117 ELAPLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKY 176 Query: 179 GFHGISYEYIAGALPGVAGSAIADGRVVVAHLGAGASMCAMRARKSVATTMGFTALDGLM 238 GFHG S++Y++ + I +++ HLG G+S+ A++ KS+ T+MGFT L+GL Sbjct: 177 GFHGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLA 236 Query: 239 MGSRTGVLDPGVVLYLLEQKGMTPAEVSDLLYRQSGLLGVSGISDDMRTLLAS----DDP 294 MG+R+G +DP ++ YL+E++ ++ EV ++L ++SG+ G+SGIS D R L + D Sbjct: 237 MGTRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDK 296 Query: 295 RAEEAVALFVYRIGRELGSLAAALGGLDALVFTGGIGEHAAEIRRRVCKQAGWLGVTLDA 354 RA+ A+ +F YR+ + +GS AAA+GG+D +VFT GIGE+ EIR + +LG LD Sbjct: 297 RAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDK 356 Query: 355 AANAQACGAARISIADSKVSAWVIPTDEDLMIARHVWRLVE 395 N A IS ADSKV+ V+PT+E+ MIA+ ++VE Sbjct: 357 EKNKVRGEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIVE 397
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 29.0 bits (65), Expect = 0.021 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Query: 22 VRLSSPATRNALQP-------AVKQHLESRIPELLTDPSVRCLVITGSG 63 L+S ALQ AV LE PEL +D S R +V+TG G Sbjct: 249 FTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGG 297
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.4 bits (110), Expect = 1e-07 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 3/134 (2%) Query: 247 LFSPTVGRLAQSIGRKPLLFAGFGALAIRGLLFASVTDPYLLVAVQLFDGVTAAVFSVLV 306 +P +G L+ GR+P+L A+ + A+ ++L ++ G+T A +V Sbjct: 58 ACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAV-A 116 Query: 307 PLIIADVAFGSGHFSFAQGVVGTASGIGASLSTVVAGLVADKFGSPAAFTGLAAVAAFGF 366 IAD+ + G + G G V+ GL+ F A F AA+ F Sbjct: 117 GAYIADIT-DGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNF 174 Query: 367 TVVWLLMPETRRVE 380 L+PE+ + E Sbjct: 175 LTGCFLLPESHKGE 188
>PF03944#delta endotoxin Length = 633 Score = 30.0 bits (67), Expect = 0.008 Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 19/131 (14%) Query: 65 SASFQMGYIRFAHFAAGQTLIVFFLLRVYWAFVGNKYSKQIFWLPITNKTWWWGM----- 119 +A+ + +IR A + I LR Y ++ N + T ++ + G+ Sbjct: 180 AANLHLSFIRDVILNADEWGISAATLRTYRDYLKNYTRDYSNYCINTYQSAFKGLNTRLH 239 Query: 120 -LYELKWYLFLVRDPKKYIGHNPLAHVAMFSFMVFMVLMILSGMALYSEGHG---IDSWQ 175 + E + Y+FL N +V+++S + L++ SG LY+ G G S+ Sbjct: 240 DMLEFRTYMFL----------NVFEYVSIWSLFKYQSLLVSSGANLYASGSGPQQTQSFT 289 Query: 176 YKLFGFMFAIF 186 + + F++++F Sbjct: 290 SQDWPFLYSLF 300
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 28.5 bits (63), Expect = 0.039 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 6/97 (6%) Query: 76 GIAGVHVAGLTQARVVQIERDILSKNDSYAAANRARFAASGAFALNFVSSPGSGKTTLLV 135 G+AG+ G+ QA + E D + D AAN A A +P + K Sbjct: 244 GLAGLAATGIAQALALTPEPDDPTTTDPDQAANAAESATKDQLTQEAFKNPENQKV---- 299 Query: 136 KTITDLKDSYPIAVIEGDQQTANDAERIRATGAPAIQ 172 I ++ P ++ D A++ + G A Q Sbjct: 300 -NIDANGNAIPSGELK-DDIVEQIAQQAKEAGEVARQ 334
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 457 bits (1178), Expect = e-160 Identities = 152/503 (30%), Positives = 238/503 (47%), Gaps = 55/503 (10%) Query: 1 MSGQATVLVVDDEIRSLESLQRVLSDE-FEVICARDATEARRVLESEIVHAILCDQRMQY 59 M+G AT+LV DD+ L + LS ++V +A R + + ++ D M Sbjct: 1 MTG-ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 60 ETGVDFLKHVRETWPDPVRMIISGYSDSEDIIAGINEAGIYQYIAKPWHPDKLLATVRGA 119 E D L +++ PD +++S + I E G Y Y+ KP+ +L+ + A Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKAS-EKGAYDYLPKPFDLTELIGIIGRA 118 Query: 120 VELFRLQKETETASIDVKLTPERVQRVVTEKRGVARKLYDFDRIVHAPDSPLGDVIALGK 179 + + + P +++ + + + + + ++ + Sbjct: 119 LAEPKRR-------------PSKLEDDSQDGMPL---------VGRSA--AMQEIYRVLA 154 Query: 180 RAAEFDISVLITGESGTGKELLARAIHYGSARSGKAFVVENCGALPDELLESELFGCKKG 239 R + D++++ITGESGTGKEL+ARA+H R FV N A+P +L+ESELFG +KG Sbjct: 155 RLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKG 214 Query: 240 AFTGAYQDRVGLFEVADGGTIFLDEIGETSPAFQVKLLRVLQESEIRPLGAQRVRKVDVR 299 AFTGA G FE A+GGT+FLDEIG+ Q +LLRVLQ+ E +G + + DVR Sbjct: 215 AFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR 274 Query: 300 IVAATNRDLEAEVRAGRFRRDLFYRLAAFPLHMPPLRERPMDVPLIAAKVLADVTKSYGR 359 IVAATN+DL+ + G FR DL+YRL PL +PPLR+R D+P + + K G Sbjct: 275 IVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEK-EGL 333 Query: 360 AIEGISPGALARMRRYDWPGNVRELQNEIQRMVVLTDDGWLQEADLSARIRQGGEPIQLQ 419 ++ AL M+ + WPGNVREL+N ++R+ L + + +R ++ Sbjct: 334 DVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIE 393 Query: 420 SAH---------------------------HSSASLKTNIEALERHMIVEALDRHGGNIS 452 A S + +E +I+ AL GN Sbjct: 394 KAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQI 453 Query: 453 RVAGELGLSRVGLRNKLGRYDLR 475 + A LGL+R LR K+ + Sbjct: 454 KAADLLGLNRNTLRKKIRELGVS 476
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 3e-04 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 16/67 (23%) Query: 354 LVDNAID-AVRGQSEP-RIDISARRQGCDVVIAVADNGPGLADGLIDKIFEPFFTTKPVG 411 LV+N I + + +I + + V + V + G K Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLAL--------------KNTK 308 Query: 412 EGTGLGL 418 E TG GL Sbjct: 309 ESTGTGL 315
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.0 bits (78), Expect = 7e-04 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 9/94 (9%) Query: 199 VTEVSSIEAALAAAEAG-FDVVQLE-KFAPADVATLAQRLAT-GPHRPVIAAAGGVNASN 255 V S+ AG D+V + + L R+ P PV+ + Sbjct: 30 VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMT 89 Query: 256 AAAYAQAGAQVLVTSSPYMAKPRDVQVKIRREQQ 289 A ++ GA Y+ KP D+ I + Sbjct: 90 AIKASEKGA------YDYLPKPFDLTELIGIIGR 117
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 52.8 bits (126), Expect = 7e-09 Identities = 50/289 (17%), Positives = 106/289 (36%), Gaps = 12/289 (4%) Query: 631 LAERARLVDIENDLEQARIDAAAKREALEMAEAELRNAAAAETAARESLRGARREVDA-- 688 + LE + AA++ LE A N + A++A ++L + ++A Sbjct: 133 MNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQ 192 Query: 689 ---------ARERHAAAEREINRHAARRSALTEAQSRLAADRLEAEMAYETAENALAEL- 738 A A +I A ++AL ++ L A + L Sbjct: 193 AELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLE 252 Query: 739 APNDDSEQRLAAVRNDIENHRRNAAQVRAEAQALAREAELADKRLQAIVAERHEWNKRKQ 798 A E R A + +E + A+ + L E + + + N +Q Sbjct: 253 AEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQ 312 Query: 799 SAASQIATVEERLAELTAERAELDNAPAVFAEKRSAVITEIEYAETDRRAAADALATAEQ 858 S + E +L AE +L+ + R ++ +++ + ++ E+ Sbjct: 313 SLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEE 372 Query: 859 AMADTDRSAKATLEHLSSAREACARAEERMEAARRRLEDVEREIRDMLE 907 ++ S ++ L ++REA + E+ +E A +L +E+ +++ E Sbjct: 373 QNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEE 421 Score = 45.4 bits (107), Expect = 1e-06 Identities = 53/296 (17%), Positives = 98/296 (33%), Gaps = 6/296 (2%) Query: 679 LRGARREVDAARERHAAAEREINRHAARRSALTEAQSRLAADRLEAEMAYETAENALAEL 738 L A+ ++ + + +I AR++ L +A +T E A L Sbjct: 94 LSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 153 Query: 739 -APNDDSEQRLAAVRNDIENHRRNAAQVRAEAQALAREAELADKRLQAIVAERHEWNKRK 797 A D E+ L N + AE AL +K L+ + + + Sbjct: 154 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 213 Query: 798 QSAASQIATVEERLAELTAERAELDNAPAVFAEKRSAVITEIEYAETDRRAAADALATAE 857 ++ ++ A + R A+L N + K + E E + AL A Sbjct: 214 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 273 Query: 858 QAMADTDRSAKATLEHLSSAREACARAEERMEAARRRLEDVEREIRDMLEVEPQAAASLA 917 K ++ A E + + + + R++ E + Q A Sbjct: 274 NFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQ 333 Query: 918 EVQEGVELPALTEIEDNLEKLRRDRERLGAVNLRAEEELNEVETQHGSLAAERDDL 973 +++E E + + LRRD + + E E ++E Q+ A R L Sbjct: 334 KLEE-----QNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSL 384 Score = 44.7 bits (105), Expect = 2e-06 Identities = 64/355 (18%), Positives = 109/355 (30%), Gaps = 22/355 (6%) Query: 173 LHARRHEAELRLKAAETNLTRVEDVIGQLSTQVDGLKKQARQAIRFRDVAAKVRKT---- 228 L + + KA + + + + + ++ K + + Sbjct: 69 LKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKA 128 Query: 229 -EAMLYHLRWRDAQSEVGAAAQVHDLGVRELAERTREQAEAARIQADR-----ASELPGL 282 E + A+ + A + + E+ E A +E L Sbjct: 129 LEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 188 Query: 283 REAEARAAAGLQRLINARELLDREEARAKERVAELERRLTQFSADVEREQRQSIDADAAL 342 +A L+ +N + + A L R +E S A + Sbjct: 189 EARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKI 248 Query: 343 ERLETEDIELREEIMERVEKRSGVDERVGLAEEALGEAERLFAELTTQLAQLTARRNQFE 402 + LE E L E + G + E A L + A L + Sbjct: 249 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLN 308 Query: 403 QAVRSHRDRLARLDNDIRNVEAEVDKLTRE--------TSGAGDVDELAEAVAMAQETLA 454 +S R L + +EAE KL + S D+D EA + Sbjct: 309 ANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQ 368 Query: 455 ELESSVQNAEAAHISARQKLDGSRAPLTEADKRVQRLETEAKTISKILNGETKNL 509 +LE + +EA+ S R+ LD SR EA K+V++ EA + L K L Sbjct: 369 KLEEQNKISEASRQSLRRDLDASR----EAKKQVEKALEEANSKLAALEKLNKEL 419 Score = 37.0 bits (85), Expect = 5e-04 Identities = 57/324 (17%), Positives = 108/324 (33%), Gaps = 27/324 (8%) Query: 668 AAAAETAARESLRGARREVDAARERHAAAEREINRHAARRSALTEAQSRLAADRLEAEMA 727 +A A + ++L + D + + + + + AL + L + A+ Sbjct: 41 SAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEK 100 Query: 728 YETAENALAELA-PNDDSEQRLAAVRNDIENHRRNAAQVRAEAQALAREAELADKRLQAI 786 + +L+E A + E R A + +E + A+ + L E R + Sbjct: 101 LRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL 160 Query: 787 VAERHEWNKRKQSAASQIATVEERLAELTAERAELDNAPAVFAEKRSAVITEIEYAETDR 846 + +++I T+E A L A +AEL+ A +A +I+ E ++ Sbjct: 161 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 220 Query: 847 RAAADALATAEQAMADTDRSAKATLEHLSSAREACARAEERMEAARRRLEDVEREIRDML 906 A A A E+A+ + A + + A E R + LE Sbjct: 221 AALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNF----- 275 Query: 907 EVEPQAAASLAEVQEGVELPALTEIEDNLEKLRRDRERLGAVNLRAEEELNEVETQHGSL 966 T ++ L ++ L A E + + SL Sbjct: 276 ---------------------STADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSL 314 Query: 967 AAERDDLVEAIKKLRTGIQSLNKE 990 + D EA K+L Q L ++ Sbjct: 315 RRDLDASREAKKQLEAEHQKLEEQ 338
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 28.4 bits (63), Expect = 0.038 Identities = 16/69 (23%), Positives = 26/69 (37%) Query: 12 PPALARDKIPLPKPRPAEAPAPDDERAADKPESDAPPQAEAAKPPPSPESKPPSACRLAL 71 PP A I PKP+P P P + K + A+ + ++P S+ A Sbjct: 86 PPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAA 145 Query: 72 TDAIAVAPS 80 T + + Sbjct: 146 TSKPVTSVA 154
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 29.6 bits (66), Expect = 0.048 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 697 EVKTRVLREQLGEKIIKLAEADFGGPSPSETRPKPRPGKPVAAEDGPAPK 746 E + + L+E+L ++ +LA+ G S S+T P +PG G AP+ Sbjct: 438 EAEAKALKEKLAKQAEELAKLRAGKASDSQT-PDAKPGNKAVPGKGQAPQ 486
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 42.4 bits (99), Expect = 3e-06 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%) Query: 117 IAAKIAAALADLHRQHVIHHDIKPSNIMF-RPSGEAVLLDMGL-ACSDQLPDLMQEEFRL 174 IA ++ L + V+H+DIKP N++F R SGE V++D+GL + S + P E F+ Sbjct: 250 IAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPKGFTESFKA 309 Query: 175 P 175 P Sbjct: 310 P 310
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 2e-14 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%) Query: 24 LLVVDDDPMQRMLIAGAAEKAGYTVTHAASCAEGIALFRDRSFDCVTLDLMLDDGDGADV 83 +LV DDD R ++ A +AGY V ++ A D V D+++ D + D+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 84 MRAMAAARYSGPMIVISGMDSERRRASRALARSLGMDLLQSFPKPIDL 131 + + AR P++V+S ++ A+ + PKP DL Sbjct: 66 LPRIKKARPDLPVLVMSAQNT----FMTAIK-ASEKGAYDYLPKPFDL 108
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.4 bits (136), Expect = 1e-10 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 6/136 (4%) Query: 11 TRVLVVDDDPLQGAVISSLCRRLAYEPMFANCFQAAADQIVSGGFDFITIDLSLGDRDGV 70 +LV DDD V++ R Y+ + I +G D + D+ + D + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 71 ELLRLIADHGRAPRVIVISGCDRRILSATVRMARAAGIVDAVSLPKPIDLASLREALILK 130 +LL I V+V+S + T A G D LPKP DL L +I + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNT---FMTAIKASEKGAYD--YLPKPFDLTELI-GIIGR 117 Query: 131 ASNQGSLRPGPTQRPR 146 A + RP + Sbjct: 118 ALAEPKRRPSKLEDDS 133
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 3e-16 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 3/124 (2%) Query: 596 RLLIVDDNPTNRAVAVQMLSEFAIQCSTACDGTEAVTAATRFEYDVILMDMRMPEMDGLE 655 +L+ DD+ R V Q LS + + D+++ D+ MP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 656 ATRSIRARGGPLATVPIIAFTANAFAEDEQACRDAGMNDHVAKPVRKNALVSAILSALPP 715 I+ +P++ +A + G D++ KP L+ I AL Sbjct: 65 LLPRIKKAR---PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 716 LQAR 719 + R Sbjct: 122 PKRR 125
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 113 bits (285), Expect = 1e-31 Identities = 36/155 (23%), Positives = 64/155 (41%) Query: 10 VFVVDDDPAVRETLSIVLSAAGYEVVCFADGDALLTVARSRSPACILLDVHIPGRSGLDV 69 + V DDD A+R L+ LS AGY+V ++ L + ++ DV +P + D+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 70 LAELHAEDYPAPIFMISGKGDIAMAVNAIKNGALDFIEKPFRGKEIVTRVEEAIDAYSRR 129 L + P+ ++S + A+ A + GA D++ KPF E++ + A+ RR Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 130 SVSGKAVKAPSYIFPGKEPLTLREREVLELFASGN 164 + G+ VL + Sbjct: 126 PSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD 160 Score = 28.6 bits (64), Expect = 0.019 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 6/49 (12%) Query: 146 KEPLTLREREVLE--LFASGNTNKEAGRQLGISPRTIEYHRANIMKKLG 192 L E ++ L A+ +A LG++ T+ +++LG Sbjct: 430 DRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKK----IRELG 474
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 81.6 bits (201), Expect = 2e-20 Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 3/257 (1%) Query: 4 GIKGRRALVCASSKGLGRACAAALAAEGVHVTMTARGAEALAQAAAALRLA--YPDVEIL 61 GI+G+ A + +++G+G A A LA++G H+ E L + ++L+ + + Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 62 EVAGDITTPEGREAALKACPEPDILVNNAGGPPPGDFRNWSRADWIKALDANMLTPIELI 121 +V E + DILVN AG PG + S +W N Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 122 KATVDTMIARKFGRIVNITSAAVKAPIDVLGLSNGARTGLTGFVAGLSRKTVRHNVTINA 181 ++ M+ R+ G IV + S P + ++ F L + +N+ N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 182 LLPGPFDTDRLRGVSAGQAKASGVPVEQILQTRMNENPAGRFGDPEEFGLACAFLCGARS 241 + PG +TD + A + A V + + P + P + A FL ++ Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGI-PLKKLAKPSDIADAVLFLVSGQA 243 Query: 242 GYITGQNILLDGGAFPG 258 G+IT N+ +DGGA G Sbjct: 244 GHITMHNLCVDGGATLG 260
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 123 bits (309), Expect = 3e-36 Identities = 83/250 (33%), Positives = 129/250 (51%), Gaps = 10/250 (4%) Query: 12 VLVTGASQGLGRQFARVLAERGAGIVLAARQIDKLKSLEQEIKDKGGRAVAVPLDVTDLA 71 +TGA+QG+G AR LA +GA I +KL+ + +K + A A P DV D A Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 72 SMATAIDRGEAALGPVTVLINNAGIAVEKLAVEQSEADWDAVIGANLKGAYFLATEVARR 131 ++ R E +GP+ +L+N AG+ L S+ +W+A N G + + V++ Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 132 MIARQQGGNIVNIASVLGDSVMKFLSPYAVSKAGIIQATKALALELASARIRVNALAPGY 191 M+ R+ G+IV + S ++ YA SKA + TK L LELA IR N ++PG Sbjct: 131 MMDRRS-GSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 192 IDTDINHAFW-STPGGEKLIK--------GIPQRRVGHESDLDGAILLLASNASRYMTGS 242 +TD+ + W G E++IK GIP +++ SD+ A+L L S + ++T Sbjct: 190 TETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMH 249 Query: 243 VVTVDGGFLL 252 + VDGG L Sbjct: 250 NLCVDGGATL 259
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99 bits (249), Expect = 9e-24 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 3/132 (2%) Query: 648 RPRVLLADDNPDMRDYVARLLG-ESYEVDAVGDGVAALEAAWKQRPDLVISDIMMPRLDG 706 +L+ADD+ +R + + L Y+V + DLV++D++MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 707 LSLLKALRNDSTLADVPVIFLSARAGEEARVEGLEAGADDYLSKPFSARELLARVRSNLD 766 LL ++ D+PV+ +SA+ ++ E GA DYL KPF EL+ + L Sbjct: 63 FDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 767 IAEVRREALRTE 778 + R L + Sbjct: 121 EPKRRPSKLEDD 132 Score = 83.3 bits (206), Expect = 2e-18 Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 5/126 (3%) Query: 1304 RSCVLVVEDNSEVGEFSTQLLHDLGYETVLASSAEQALKLLDQDADRFNIVLSDVVMPGM 1363 + +LV +D++ + Q L GY+ + S+A + + A ++V++DVVMP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA--AGDGDLVVTDVVMPDE 60 Query: 1364 DGVALGREIRKRLPNLPVVLNSGYAHVLA--DDGHHG-FELLHKPYSVEDLSKVLRRAMT 1420 + L I+K P+LPV++ S + G ++ L KP+ + +L ++ RA+ Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 1421 ESRRAL 1426 E +R Sbjct: 121 EPKRRP 126
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 39.6 bits (92), Expect = 3e-05 Identities = 15/48 (31%), Positives = 25/48 (52%) Query: 561 SISGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTANTMVQDLLNV 608 +S S ++ +E+ L QQ Y AN +V+ TAN + L+N+ Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 95.8 bits (238), Expect = 7e-23 Identities = 78/329 (23%), Positives = 144/329 (43%), Gaps = 21/329 (6%) Query: 5 DALSIAMAGLRANQASMSLVSSNVANAETPGYVRKTVDQITTTA-----GPSGSGVSIIG 59 ++ AM+GL A QA+++ S+N+++ GY R+T + G G+GV + G Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61 Query: 60 VNRELDAYLQSQLRTETSGASYALLRSDFLKQLQGLYGNPNSTGTLENAFNSLTAAVQAL 119 V RE DA++ +QLR + +S R + + ++ + ST +L ++Q L Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLS--TSTSSLATQMQDFFTSLQTL 119 Query: 120 GTSPDSTSARIGVLNAARVVAGGLNATSNGIQSLRSGAETGLADSVNTANNLLQRIASIN 179 ++ + +AR ++ + + T ++ + SV+ NN ++IAS+N Sbjct: 120 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 179 Query: 180 NNIRTNPAGGTSTDVATASLLDQRDAAISQLSQLMDIRVVTDGSNRATVFTGSGMQLVGM 239 + I G +LLDQRD +S+L+Q++ + V + +G LV Sbjct: 180 DQISRLTGVGAGAS--PNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLV-- 235 Query: 240 QAAKLSFDAQGTVTPSTTWSSNSATSQLGSVKITYADGGTIDLTSS-LKSGTIAAYIELR 298 QG+ +SA +V G I++ L +G++ + R Sbjct: 236 ---------QGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFR 286 Query: 299 DKTLVQAQTQLDQFAASMASALSDKTTAG 327 + L Q + L Q A + A A + + AG Sbjct: 287 SQDLDQTRNTLGQLALAFAEAFNTQHKAG 315 Score = 55.0 bits (132), Expect = 5e-10 Identities = 23/82 (28%), Positives = 38/82 (46%) Query: 541 NGTLSSYLQQFVGQQGSDALAASQLAEGQSVVLNTLQQKYSTSSGVNMDEEMAHLLSLQN 600 + + V G+ + Q V+ L + + SGVN+DEE +L Q Sbjct: 464 AKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQ 523 Query: 601 AYSANARVMSTVNQMYQALMQV 622 Y ANA+V+ T N ++ AL+ + Sbjct: 524 YYLANAQVLQTANAIFDALINI 545
>FLAGELLIN#Flagellin signature. Length = 507 Score = 45.8 bits (108), Expect = 5e-07 Identities = 51/363 (14%), Positives = 96/363 (26%), Gaps = 5/363 (1%) Query: 400 NSTVFLQDATAADMLSAIDLATGTKSATIATSVATVTTPAGNVASTVLSGALKLSTGTAA 459 N + + ++ L + +V + + NV Sbjct: 150 NDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDV 209 Query: 460 DLSITGTGNALAALGLNGPTGTDTSFNASRTASAGNVSGKSLTFTSFKDGAAVNVTFGDG 519 + T + + A T S A G Sbjct: 210 NSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269 Query: 520 TNGTVKSLAQLNTALAANNMVAVVDNATGKLTISASNDFASHTLGSSDGGAIGGTLSSTL 579 G + D T + G A + Sbjct: 270 KGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQS 329 Query: 580 TFSSASAPVADTNAQNTRAGLVKQYNDIMDQIKTTAQDASFNGVNLLDGDTLKLVFNETG 639 + + ++ V + + A +A + Sbjct: 330 SKNVYTSVVNGQFTFDDKTKNESAKLSD-----LEANNAVKGESKITVNGAEYTANAAGD 384 Query: 640 KSTISIQGVSYNPTGLGLSTLTSGTDFIDNDATNSVLAKLSTASTTLRSQASAFGSNLSI 699 K T++ + + + T G+STL + +T + LA + +A + + + S+ G+ + Sbjct: 385 KVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNR 444 Query: 700 VQARQDFSKNLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAVSALSLANQSQQGVLQ 759 + N + L + S + AD E +N Q S L+ ANQ Q VL Sbjct: 445 FDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLS 504 Query: 760 LLR 762 LLR Sbjct: 505 LLR 507 Score = 43.5 bits (102), Expect = 3e-06 Identities = 60/411 (14%), Positives = 117/411 (28%), Gaps = 4/411 (0%) Query: 14 LSSLQATADLLATTQSRLSSGKKVNSALDNPTNFFTASGLDARSSDINNLLDGIGNGVQI 73 ++L + L++ RLSSG ++NSA D+ A+ + + +G+ I Sbjct: 14 QNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISI 73 Query: 74 LQAANTGITSLTKLVDSAKSIANQALQTVSGYSTKSNVSTTITGATA--NDLRGTTSYSS 131 Q + + + + ++ QA + S ++ I + + T ++ Sbjct: 74 AQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNG 133 Query: 132 TS-AAGNVLYSGAAGGATAATSAATLGGTAGSLVGSGVVNNNLTVPVAIDSTTRLFAAGG 190 + + G T L +G N N + F Sbjct: 134 VKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVT 193 Query: 191 GGTAGLTTQANTTFTDGSKLSVNGKTITFSATAVPGASAVAAGSSLSSTNVVTDSGGNST 250 G S V T V +A ++ + N +T Sbjct: 194 GYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTT 253 Query: 251 VYLGTAADSAATVGDLMAAIDVASGAQSITAINATTKIATLTGGAGASSITGGTVTLKSS 310 A++ A G + + + TK G +++I G VTL + Sbjct: 254 KSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVA 313 Query: 311 TGADLSISGTADMLASL-KLTASLGSSVTTVAAARATSSSSLGSLIEDGSTLNVNGKTIT 369 + + A L S + S+ + T S+ L L + + + T+ Sbjct: 314 DITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVN 373 Query: 370 FKNTLSTDVNAIPTGFGKPSGAHYATDGNGNSTVFLQDATAADMLSAIDLA 420 + T GK G A + + Sbjct: 374 GAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASI 424
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.035 Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 9/68 (13%) Query: 16 ERQMDVVANNLANINTNGFKAERSVF---------QEFLNTGAHEDNFQAQDRRVSFVQD 66 + ++ +NN+++ N G+ + ++ ++ G + Q + Q Sbjct: 15 QAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGVQREYDAFITNQL 74 Query: 67 RAAYHDFA 74 RAA + Sbjct: 75 RAAQTQSS 82
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 280 bits (718), Expect = 3e-94 Identities = 83/347 (23%), Positives = 160/347 (46%), Gaps = 21/347 (6%) Query: 66 VLSQEEIDNLLGF-SVGEVHLDENSGIRAIIDSAMVSY--------ERLPMLEIVFDRLV 116 VLSQ+EID LL S G+ +++ I + + E++ L ++ + Sbjct: 4 VLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETFA 63 Query: 117 RLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVDSSL 176 RL TTSL V V + + + + +++ SIP P+ L V + + + VD S+ Sbjct: 64 RLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSI 123 Query: 177 IYSMIDVLLGGRRGQAALRIEGRPYTTIETNLVKRLLQVVLADAEQAFRPLSPVAFSIDR 236 +S+ID L GG A ++ R T IE ++++ ++ +LA+ +++ + + + + Sbjct: 124 TFSIIDRLFGGTGQAAKVQ---RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQ 180 Query: 237 LETNPRFAAISRPANAAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFGR 296 +ETNP+FA I P+ +LV L + + G + +PY TIEPI L F R Sbjct: 181 IETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240 Query: 297 --DQVWEGHLATEVVQAEISVDAVLYEAEVPLKQLMALQVGDTLPL-DLRADALVAVRCG 353 + G L ++ ++ V A + + ++ ++ L+VGD + L D + G Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300 Query: 354 SVTLTEGRMGRVGDRVAIRVTKPLRRPVTTYAMFERTDEQSKMMEAQ 400 + + G VG ++A ++ + + + + E+ E + Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERI------ESTSQEDFEELSADEEE 341
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.9 bits (90), Expect = 2e-05 Identities = 37/213 (17%), Positives = 73/213 (34%), Gaps = 18/213 (8%) Query: 45 PSWAQANLNFPGGNAKTGDSDITGSVPAAPKKEEPKPVVAPPEEAKPAET--EPPQAISP 102 P + N N T ++I VP+ P E E A+ E PP +P Sbjct: 983 PEVEKRNQTVDTTNITT-PNNIQADVPSVPSNNE--------EIARVDEAPVPPPAPATP 1033 Query: 103 AERAILERLQARRQELDARAREVEIRESLLKAAEKRIESRVEQIKA-SEGEIGKATEQKT 161 +E ++++ E + E+ + E E++ E+ ++ + Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 162 EADAARFKGIITMYESMKPKDAAKIFDRLEMPVLIEIASQIAP-RKMSDILGLMTPEAAE 220 E K T+ + K K + E+P ++ SQ++P ++ S+ + A E Sbjct: 1094 ETQTTETKETATVEKEEKAKVETE--KTQEVP---KVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 221 KLTVEMARRASGRSAATASAAALPKIEGRPLPP 253 + ++ TA K + Sbjct: 1149 NDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 47.7 bits (113), Expect = 1e-07 Identities = 22/130 (16%), Positives = 31/130 (23%), Gaps = 3/130 (2%) Query: 351 DADHATTPETKPAAKPQAQAA---PQSAAAPPKAAAAAPAPAGPPPRQAEAATPSKAAAP 407 A + PA QA P+ P P P P E P P Sbjct: 46 PAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP 105 Query: 408 PVAAPVAAVPASAAPATAGAEASAAPAASPQPSAGPVVAENPQAPPPAPADAVVAMPAAA 467 V P + + A +P++ A + + Sbjct: 106 KPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQP 165 Query: 468 SSAARAAEAR 477 ARA R Sbjct: 166 QYPARAQALR 175 Score = 43.4 bits (102), Expect = 3e-06 Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 1/118 (0%) Query: 362 PAAKPQAQAAPQSAAAPPKAAAAAPAPAGPPPRQAEAATPSKAAAPPVAAPVAAVPASAA 421 PA + PP+A P P P + E AP V P Sbjct: 46 PAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP 105 Query: 422 PATAGAEASAAPAASPQPSAG-PVVAENPQAPPPAPADAVVAMPAAASSAARAAEARR 478 E + P P P + A A + P + ++ A +R Sbjct: 106 KPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRN 163
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 264 bits (677), Expect = 1e-91 Identities = 120/244 (49%), Positives = 164/244 (67%), Gaps = 2/244 (0%) Query: 8 RRVFIFLTVLIAAAAALATPALAQDVSINLGGAGGTGVTERAIQLIALLTVLSIAPSILV 67 RR+ VL+ LA L S L G G + +Q + +T L+ P+IL+ Sbjct: 2 RRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSL--PVQTLVFITSLTFIPAILL 59 Query: 68 MMTSFTRIVVVLSLLRTALGTATAPPNSVIIALALFLTGFVMGPTLQKSYDDGIKPLIAN 127 MMTSFTRI++V LLR ALGT +APPN V++ LALFLT F+M P + K Y D +P Sbjct: 60 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEE 119 Query: 128 EMAVEDALVRASGPLRIFMQKNVREKDLKLFLDLSGEQPPATPEELSLRILMPAFMISEL 187 ++++++AL + + PLR FM + RE DL LF L+ P PE + +RIL+PA++ SEL Sbjct: 120 KISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSEL 179 Query: 188 KRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSL 247 K AF+IGF +F+PFLIIDLV+ASVLM++GMMM+PP ++LPFKL+ FVLVDGW L+ GSL Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239 Query: 248 VQSY 251 QS+ Sbjct: 240 AQSF 243
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 47.8 bits (113), Expect = 5e-08 Identities = 24/178 (13%), Positives = 45/178 (25%), Gaps = 8/178 (4%) Query: 168 PEPMTRPEPMPRSELPIARPDPRSEPRPELRPEPRAESRPEPRMDPAPRPRAEPAMPRPP 227 PE R + + + + P E A P PAP +E Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 228 RPEPPKAQPPIRTERPAPPVPPAAPAPAAPVLPTPAAVSAA--DQNLAEMANRLEAALRR 285 + + A Q+ +E + Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 286 PPD------AKPEIAAPPAAPESTARPAPRAPEPRPEPPAATPASPKSGFESLEDEMA 337 AK E P+ T++ +P+ + P A PA ++++ + Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQS 1160 Score = 43.9 bits (103), Expect = 7e-07 Identities = 53/293 (18%), Positives = 87/293 (29%), Gaps = 43/293 (14%) Query: 53 VDGRRRLVLVRRDNVEHLL---MIGGPSDIVVESNIIRANPAREQAAQRPGLGVEPRLAP 109 V+GR L + + I P++I + + +N E+ A R P AP Sbjct: 974 VNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSN--NEEIA-RVDEAPVPPPAP 1030 Query: 110 ADWEAEGATESPEPQTPELPPRPSRPSFADEARRPAPPPMPQRRTTEFPGNDPFAGLIPE 169 A T S +T + + + R + + + + Sbjct: 1031 A-------TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK----EAKSNVKAN 1079 Query: 170 PMTRPEPMPRSELPIARPDPRSEPRP------------ELRPEPRAESR--PEPRMDPAP 215 T SE + E + + P+ S+ P+ Sbjct: 1080 TQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETV 1139 Query: 216 RPRAEPAMPRPPRPEPPKAQPPIRTERPAPPVPPAAPAPAAPVLPTPAAVSAADQNLAEM 275 +P+AEPA R P +P +T A PA + P S Sbjct: 1140 QPQAEPA--RENDPTVNIKEPQSQTNTTADTEQPAKETSSNV--EQPVTESTT------- 1188 Query: 276 ANRLEAALRRPPDAKPEIAAPPAAPESTARPAPRAPEP-RPEPPAATPASPKS 327 N + + P + P P ES+ +P R R P PA+ S Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSS 1241
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 32.2 bits (73), Expect = 5e-04 Identities = 9/38 (23%), Positives = 17/38 (44%) Query: 101 NVNSVIEMTDMRNAQRSYEANLNVISATRRMIQRTLDI 138 VN E +++ Q+ Y AN V+ + ++I Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 118 bits (296), Expect = 9e-31 Identities = 94/414 (22%), Positives = 166/414 (40%), Gaps = 21/414 (5%) Query: 55 ILLSLLLAMFLAALDQTIVATALPTIGRQFGDVEN-LSWVITAYLLSSTAVAPVFGSLCD 113 IL+ L + F + L++ ++ +LP I F +WV TA++L+ + V+G L D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 114 IYGRRATIIAALSLFIAGSVMCALAPS-VLVLILGRALQGLGGGGIMPVVQTVISDVVSP 172 G + ++ + + GSV+ + S +LI+ R +QG G +V V++ + Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 173 RERGKYQAYFSGVWVAAGIG-GPVLGGAFAEHLHWSMIFWINLPLSIGALALLLPKMAKI 231 RGK + VA G G GP +GG A ++HWS + I + I L+ K+ Sbjct: 135 ENRGKAFGLIGSI-VAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLM-----KL 188 Query: 232 PVYHRRRK--VDWLGGVLLMASALAVMLVLTWGGTRFSWLSPVILALAGGAVLFAASFIW 289 R K D G +L+ + ML T +S ++ +VL F+ Sbjct: 189 LKKEVRIKGHFDIKGIILMSVGIVFFML----FTTSYSISFLIV------SVLSFLIFVK 238 Query: 290 HALREPEPFLPLQLMGGTVVPWAMAAGGFAMGAMIGLTVHIPLYYEAVYHLSASASGLAL 349 H + +PF+ L + GG G + G +P + V+ LS + G + Sbjct: 239 HIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVI 298 Query: 350 IPIAAVSVFGAAFTGRAMTHLDHYKRIAIIGTGFSALMAAAIALLTPLPLWAFLTLLSLF 409 I +SV + G + + IG F ++ + L W ++ Sbjct: 299 IFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFV 358 Query: 410 SLGLGTVFPVSMVSIQNAVPRPQIGTATGAMNFFRALMSSFTVAAFTAVLLITF 463 GL V + +++ + + G +NF L +A +L I Sbjct: 359 LGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPL 412
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.1 bits (67), Expect = 0.019 Identities = 49/231 (21%), Positives = 78/231 (33%), Gaps = 29/231 (12%) Query: 77 ALNAQQRRLDELALKQARPQLGADSALRPRGAAEHKSAFDAYIRNGDAATLRQIETKALS 136 A+++ Q R++ L +A + A + R + AAE + A + A +R T A+ Sbjct: 196 AISSLQIRMNTLTAAKASIEAAAANKAREQAAAE--AKRKAEEQARQQAAIRAANTYAMP 253 Query: 137 VGSNPDGGYLVPEELERSIAARLSAISPIRGLASVRQISGSVYKK-PFMTAGPATGWVGE 195 +G + I A S + ++ + G V P + A Sbjct: 254 A----NGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASAPSVMAVGFASLTYS 309 Query: 196 AAARPQTSSPTLD----ALSFPAMELYAMPAA--TATLLDDAAVNLDDWLTGEIDTVFAE 249 + Q T D AL A +L P+ A V+L LT E Sbjct: 310 SRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVNLNAVAKASGTVDLPMRLTNEAR---GN 366 Query: 250 QEGAAFVSGDGINKPKGFLAAPTVANAAWSWGNLGFVATGAAGAFPASNPS 300 + VS DG++ PK A P A G + + PS Sbjct: 367 TTTLSVVSTDGVSVPK---AVPVRMAA----------YNATTGLYEVTVPS 404
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 29.7 bits (66), Expect = 0.027 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 13/128 (10%) Query: 206 SRRLIVRANASFLEFPQLVGSCKPLDLAESQAILAARSLPADRIYYYRAIEIALLILSSR 265 S +I + + EF L+ S D ++S +L ++ ++I+I + Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLS--DDSDSSDLLFSQKFKEKLELNNKSIDINFI----- 230 Query: 266 GISLQEEGVDVLLDSFIINFDDLFEEYLRRVLQARAPNLLSVKDG-NFEGKRQLFEDRKD 324 +E + +F + F F R VL+ AP++ + G ++ E K Sbjct: 231 -----KENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLKK 285 Query: 325 QPAQPDVV 332 + + D + Sbjct: 286 EGVEKDRI 293
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 45.4 bits (107), Expect = 7e-08 Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 49/202 (24%) Query: 14 RAVVTI---VGSRGNFCSGALIAPDLVLSAAHCVGPGANYKIVQLDAERRPQLRD----- 65 V I + SG ++ D +L+ H V + L A +D Sbjct: 88 APVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVV-DATHGDPHALKAFPSAINQDNYPNG 146 Query: 66 ---IRRVAAHPQFDRRAIEANRASADVALLQLAA----PLPGK--TPLPIGAPGDPLAAG 116 ++ + D+A+++ + G+ P + Sbjct: 147 GFTAEQITKYS-----------GEGDLAIVKFSPNEQNKHIGEVVKPATMSN-NAETQVN 194 Query: 117 QSFTIAGIGVAQRGDGRSGGVVRSAQLIATGRPGRLQIRLVDPATNNARDGLGACTGDSG 176 Q+ T+ G GD + S I + +Q D +T G+SG Sbjct: 195 QNITVTG----YPGDKPVATMWESKGKITYLKGEAMQY---DLSTT---------GGNSG 238 Query: 177 GPALQEQNGRAVIIGVVSWSTG 198 P E+N +IG+ Sbjct: 239 SPVFNEKNE---VIGIHWGGVP 257
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.7 bits (152), Expect = 3e-14 Identities = 29/206 (14%), Positives = 79/206 (38%), Gaps = 21/206 (10%) Query: 14 SEATRERLIEAGLKLFAELGMDGVRTRALAEVAGVNQSAIPYHFGSKDGVYRAVIEEIAR 73 ++ TR+ +++ L+LF++ G+ +A+ AGV + AI +HF K ++ + E Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 74 EIADGLAATGLLQMSAAEGKTMSRDRCLKNLRALI------RAFTILILSPGRSTDRTLL 127 I + + ++ R+ + L + + I+ + ++ Sbjct: 69 NIGE--LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 128 IVREQLRPTENFNHLFKSFIEPIHKTVGSIVARLNDDRADSEVTIIRAHAIIGQVLSFAV 187 ++ E+++ + ++ I + A L + I I ++ Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEA--KMLPADL-----MTRRAAIIMRGYISGLM---- 175 Query: 188 AQHSYLMRSKNSKLSLDKVEEIADVI 213 ++L ++ L + + +A ++ Sbjct: 176 --ENWLFAPQSFDLKKEARDYVAILL 199
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.5 bits (66), Expect = 0.014 Identities = 9/36 (25%), Positives = 18/36 (50%) Query: 2 SDKTVIGLSRLIALQQQVDNLARNVANQNTTGFKRE 37 S +S L A Q ++ + N+++ N G+ R+ Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQ 36
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.004 Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 19/176 (10%) Query: 96 QETLVQVTPRFPGIVREIRRRIGDKVESGDL-LAKIESNQSLTVYEMRAPIPGTVIDRQI 154 +E VT F + + R+ D + L LAK E Q + +RAP+ V ++ Sbjct: 286 KEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQAS--VIRAPVSVKVQQLKV 343 Query: 155 -SLGEYASEQKPAFTVA-DVSTVWVDLSVYRRDLPRVRIGD--KILIDVGDDGK--PVEA 208 + G + + + + T+ V V +D+ + +G I ++ + + Sbjct: 344 HTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVG 403 Query: 209 SLSYISPVGSSDTQSALA----RAVVPNA------DMRLRTGLFVSARLILAARQV 254 + I+ D + L ++ N ++ L +G+ V+A + R V Sbjct: 404 KVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSV 459 Score = 29.4 bits (66), Expect = 0.020 Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 108 GIVREIRRRIGDKVESGDLLAKIESNQS 135 IV+EI + G+ V GD+L K+ + + Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGA 132
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 755 bits (1951), Expect = 0.0 Identities = 219/1069 (20%), Positives = 430/1069 (40%), Gaps = 67/1069 (6%) Query: 8 FSVRQRWLVMIGVLMMAAFGAWNFTRLPIDAVPDITNVQVQINTNAPGYSPLEVEQRITF 67 F +R+ + +++ GA +LP+ P I V ++ N PG V+ +T Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63 Query: 68 PIETAMGGLPNLVNTRSLS-RYGLSQVTVVFKDGTDIYFARQLVNERVQRVKDILPVGIE 126 IE M G+ NL+ S S G +T+ F+ GTD A+ V ++Q +LP ++ Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123 Query: 127 TAMGPVSTGLGEIYMYTVEAKEGAKNAEGKPYTPSDLRTAQDWIIKPQLRNVAGVNEVNT 186 V M ++ T D+ +K L + GV +V Sbjct: 124 QQGISVEKSSSSYLMVA------GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 187 IGGFEKQFHVLPDPARLMAYRLSFRDVMTSLASNNANVGAGYI------EKNGEQYLVRT 240 G + + D L Y+L+ DV+ L N + AG + + Sbjct: 178 FGA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 241 PGQVANVEDIRQIVI-GSRNGVPVRIMDVAEVKEGTDLRTGAATVSGKEVVLGTAMLLIG 299 + N E+ ++ + + +G VR+ DVA V+ G + A ++GK L G Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATG 296 Query: 300 ENGRTVAQRVAAKLEQIQKSLPEGISLRAIYDRTHLIDATIATVEKNLIEGALLVIAILF 359 N A+ + AKL ++Q P+G+ + YD T + +I V K L E +LV +++ Sbjct: 297 ANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMY 356 Query: 360 LILGNIKAAFATALVIPLSMLFTITGMFENKVSANLMSLG--AIDFGIIIDGAVIIVENC 417 L L N++A + +P+ +L T + S N +++ + G+++D A+++VEN Sbjct: 357 LFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV 416 Query: 418 LRLLAHEQQRRGRLLTREERFETIIAGAREVIKPSLFGTLIIAVVYLPVLTLTGVEGKMF 477 R++ ++ E ++ + ++++ V++P+ G G ++ Sbjct: 417 ERVMMEDK---------LPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIY 467 Query: 478 TPMALTVLMALLGASLLSMTFVPAAVALMVTGKVSEKE-------NWFMRLAHRT---YV 527 ++T++ A+ + L+++ PA A ++ +E WF + Y Sbjct: 468 RQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYT 527 Query: 528 PLLDLAVRLRVVVAAAAVVLVIVSGYAATRMGGEFIPSLDEGDVAIQAMRIPGTSLTQSL 587 + + ++V R+ F+P D+G G + ++ Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 588 EMQMALEKRLLAIPEVKEAFARTGTAEVATDPMPPSISDGYVMLKPRDQWPDPKKPKLEV 647 ++ + L + + + + +V LKP ++ + V Sbjct: 588 KVLDQVTDYYLKNEK-ANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 648 MKEIETASEEVA-GNLYELSQPIQLRFNELISGVRSDVG-VKIFGDDLDVLAQVAAQVQA 705 + + ++ G + + P EL + D + G D L Q Q+ Sbjct: 647 IHRAKMELGKIRDGFVIPFNMP---AIVELGTATGFDFELIDQAGLGHDALTQARNQLLG 703 Query: 706 IL-QTIKGAADVKTEQVAGLPVLTVKLDRQALARFGINVADVQSLVEIAVGGKSAGLVFE 764 + Q V+ + +++D++ G++++D+ + A+GG + Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 765 GDRRFDLVVRLPDHLRTDVEAIKRLPIPLPPADGQAKATPAVFGNSPLAQMRYAPLAELA 824 R L V+ R E + +L + A+G+ P + Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVRS--ANGEM-----------------VPFSAFT 804 Query: 825 EISVSPGPNQISREDGKRRIVVSANVRGRDLGSFVGEAQQLVAG-KVKLPAGYWIGWGGQ 883 G ++ R +G + + G+ G+A L+ KLPAG W G Sbjct: 805 TSHWVYGSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWTGM 861 Query: 884 FEQLVSATERLTIVVPIALLLIFLLLFISLGSAADALLVFSGVPLALTGGIFALLLRGIP 943 Q + + +V I+ +++FL L S + + V VPL + G + A L Sbjct: 862 SYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQK 921 Query: 944 LSISAGIGFIALSGVAVLNGLVIITFI-ERLRGDGRKIVDAVREGALTRLRPVLMTALVA 1002 + +G + G++ N ++I+ F + + +G+ +V+A RLRP+LMT+L Sbjct: 922 NDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAF 981 Query: 1003 SLGFVPMALATGAGAEVQRPLATVVIGGIVSSTILTLLVLPALYILFRR 1051 LG +P+A++ GAG+ Q + V+GG+VS+T+L + +P +++ RR Sbjct: 982 ILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030 Score = 83.7 bits (207), Expect = 2e-18 Identities = 81/525 (15%), Positives = 169/525 (32%), Gaps = 46/525 (8%) Query: 3 EKLLAFSVRQRWLVMIGVLMMAAFGAWNFTRLPIDAVPDITNVQVQINTNAPGYSPLEVE 62 + + ++ ++ A F RLP +P+ P + E Sbjct: 527 TNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERT 586 Query: 63 QRITFPIETAMG-----GLPNLVNTRSLSRYGLSQ----VTVVFKD----GTDIYFARQL 109 Q++ + + ++ S G +Q V K D A + Sbjct: 587 QKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 110 VNERVQRVKDILPVGIETAMGPVSTGLGEIYMYTVEAKEGAKNAEGKPYTPSDLRTAQDW 169 ++ + I + P LG + E + A L A++ Sbjct: 647 IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDA------LTQARNQ 700 Query: 170 IIKPQLRNVAGVNEVNTIG-GFEKQFHVLPDPARLMAYRLSFRDVMTSLASNNANVGAGY 228 ++ ++ A + V G QF + D + A +S D+ ++++ Sbjct: 701 LLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVND 760 Query: 229 IEKNGEQY--LVRTPGQVA-NVEDIRQIVIGSRNGVPVRIMDVAEVKEGTDLRTGAATVS 285 G V+ + ED+ ++ + S NG V G+ + Sbjct: 761 FIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWV----YGSPRLE 816 Query: 286 GKEVVLGTAMLLIGENGRTVAQRVAAKLEQIQKSLPEGISLRAIYDRTHLIDATIATVEK 345 + + G + A +E + LP GI YD T + + + Sbjct: 817 RYNGLPSMEIQGEAAPGTSSGD-AMALMENLASKLPAGIG----YDWTGMSYQERLSGNQ 871 Query: 346 NLIEGALLVIAI---LFLILGNIKAAFATALVIPLSMLFTITGMFENKVSANLMSL-GAI 401 A+ + + L + + + LV+PL ++ + ++ + G + Sbjct: 872 APALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLL 931 Query: 402 D-FGIIIDGAVIIVENCLRLLAHEQQRRGRLLTREERFETIIAGAREVIKPSLFGTLIIA 460 G+ A++IVE L+ E + E + R ++P L +L Sbjct: 932 TTIGLSAKNAILIVEFAKDLMEKEG---------KGVVEATLMAVRMRLRPILMTSLAFI 982 Query: 461 VVYLPVLTLTGVEGKMFTPMALTVLMALLGASLLSMTFVPAAVAL 505 + LP+ G + + V+ ++ A+LL++ FVP + Sbjct: 983 LGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVV 1027 Score = 69.1 bits (169), Expect = 7e-14 Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 1/157 (0%) Query: 900 IALLLIFLLLFISLGSAADALLVFSGVPLALTGGIFALLLRGIPLSISAGIGFIALSGVA 959 A++L+FL++++ L + L+ VP+ L G L G ++ G + G+ Sbjct: 346 EAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLL 405 Query: 960 VLNGLVIITFIER-LRGDGRKIVDAVREGALTRLRPVLMTALVASLGFVPMALATGAGAE 1018 V + +V++ +ER + D +A + ++ A+V S F+PMA G+ Sbjct: 406 VDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGA 465 Query: 1019 VQRPLATVVIGGIVSSTILTLLVLPALYILFRREASP 1055 + R + ++ + S ++ L++ PAL + S Sbjct: 466 IYRQFSITIVSAMALSVLVALILTPALCATLLKPVSA 502
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.4 bits (81), Expect = 1e-04 Identities = 29/201 (14%), Positives = 53/201 (26%), Gaps = 42/201 (20%) Query: 2 QATGLPRIVRPPRPPRPVKPSTSSAHAPAPPMALPRP---PTPAPRPPDVDPMSTLSQLE 58 + + V P P+ + R P P P P + Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 59 QRRETSTIEYDDEGRRIMTEPLASPPRPATTILHPPGSGNTAPARPVLPPVRAHFVLGAR 118 ++E+ T+E + V Sbjct: 1044 SKQESKTVE-------------------------------KNEQDATETTAQNREVAKEA 1072 Query: 119 RPPVPPAPRHLT---TEQKAAWYADQESKIDAML-AQREADKAAAKKAEAEKRAAQRAAW 174 + V + + + E+K A + + +A K E K +Q + Sbjct: 1073 KSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPK 1132 Query: 175 QERVSRTIPRRRPAAEPKKAP 195 QE+ S T+ +P AEP + Sbjct: 1133 QEQ-SETV---QPQAEPAREN 1149
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 28.3 bits (63), Expect = 0.005 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 31 IDGVMRYRLAQRQHAERAWRRWNARNLRTALE-LSEALRARDHER 74 IDG+ +LAQ+ E+ W+ +N R L+ L+ + AR H+ Sbjct: 22 IDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHHDY 66
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 26.9 bits (59), Expect = 0.039 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 61 AGLLNDFLTAMP--GVGWSPHGVRYAFASYVERDLGFAPSEAKL 102 AG LN F++A G+G +G RYA R++ P+E K Sbjct: 233 AGALNPFISAGEALGIGDILYGTRYAIDKAAMRNIAPLPAEGKF 276
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 104 bits (260), Expect = 8e-30 Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 2/141 (1%) Query: 1 MIHLVTAENFTQYEGLMEQAFRLRHSVFVDEMGWEELRRADGREVDQFDDGHAVHMLYVE 60 M+ + + E + F LR F D + W ++ DG E DQ+D+ + ++ ++ Sbjct: 1 MLEIFDVNHTLLSETKSGELFTLRKETFKDRLNWA-VQCTDGMEFDQYDNNNTTYLFGIK 59 Query: 61 DQKLLGYQRLLPSIRPNLLSTVLRHLCDDEPPAAADVWEWTRYCV-APGCRDRGRMLSPI 119 D ++ R + + PN+++ + + E +R+ V +D PI Sbjct: 60 DNTVICSLRFIETKYPNMITGTFFPYFKEINIPEGNYLESSRFFVDKSRAKDILGNEYPI 119 Query: 120 GNMLLSGIVEWGIQNGVSKII 140 +ML ++ + G I Sbjct: 120 SSMLFLSMINYSKDKGYDGIY 140
>cloacin#Cloacin signature. Length = 551 Score = 26.2 bits (57), Expect = 0.019 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Query: 17 VAAAIALGLGALSAPASAATPAPATS--AVVAPMTDISA 53 VAA +A G ALS P A A + S A+ A + DI A Sbjct: 84 VAAPVAFGFPALSTPG-AGGLAVSISAGALSAAIADIMA 121
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 111 bits (279), Expect = 8e-32 Identities = 78/255 (30%), Positives = 128/255 (50%), Gaps = 11/255 (4%) Query: 3 RTLQGKVALVTGASKGIGAEIALQLAAQGAAV-AVNYASSKDGADAVVAKIAAAGGKAVA 61 + ++GK+A +TGA++GIG +A LA+QGA + AV+Y K + VV+ + A A A Sbjct: 4 KGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEK--LEKVVSSLKAEARHAEA 61 Query: 62 VHGNLADPQGAKAVVDATVQALGPIDVLVNNAGVYEMLPLDAITPEHFHRQFDLNVLGLL 121 ++ D + + +GPID+LVN AGV + +++ E + F +N G+ Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 122 LVTQEAARQF-NSNGGSIVNISSGVSTLAPPNSAVYTATKAAVDAITAVLARELAPRKIR 180 ++ ++ + GSIV + S + + + A Y ++KAA T L ELA IR Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 181 VNAVNPGMVVTEGIKAAGHDQGEMRQWVEAT-------TPLGRVGKAEEIAAVVTFLASE 233 N V+PG T+ + D+ Q ++ + PL ++ K +IA V FL S Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 234 GASYVTGETLHVTGG 248 A ++T L V GG Sbjct: 242 QAGHITMHNLCVDGG 256
>SECA#SecA protein signature. Length = 901 Score = 58.7 bits (142), Expect = 3e-12 Identities = 19/22 (86%), Positives = 21/22 (95%) Query: 216 RKVGRNEPCPCGSGKKYKRCCG 237 RKVGRN+PCPCGSGKKYK+C G Sbjct: 877 RKVGRNDPCPCGSGKKYKQCHG 898
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.020 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 6/36 (16%) Query: 6 FLLVIAGPNGSGKTTLV------DYLMESGIDFGEH 35 + +V+ G G GK+TL+ D+ ++ D G Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG 632
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 88.2 bits (218), Expect = 5e-23 Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 8/191 (4%) Query: 7 KIAIVTGAGTGVGRAASLALMQIGFTVVLA---GRRLELLQETQKLGDGIGDSLPVQADM 63 KIA +TGA G+G A + L G + +LE + + K ++ P AD+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP--ADV 66 Query: 64 ADPASIAALFDKTVASYGRLDLLFNNAGMGAPPVPFEDLSLAQWQAVVDTNLTAPFLCTQ 123 D A+I + + G +D+L N AG+ P LS +W+A N T F ++ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 124 HAFRIMKDQSPRGGRIINNGSISAHAPRPFSAAYTSTKHAISGLTKSSNLDGRAYDIAVG 183 + M D+ R G I+ GS A PR AAY S+K A TK L+ Y+I Sbjct: 126 SVSKYMMDR--RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 184 QIDIGNAATPM 194 + G+ T M Sbjct: 184 IVSPGSTETDM 194
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.7 bits (85), Expect = 9e-05 Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 7/118 (5%) Query: 158 ELRKDVKERA---TPDEWRLVETSSQPTFLSSMEEAPTAEAEGAPPAEAPEDIAAEADPT 214 EL ++ R P + E S + ++P +A + + E Sbjct: 357 ELE-NLVRRLTALYPQDVITREIIENE-LRSEIPDSPIEKAAARSGSLSISQAVEENMRQ 414 Query: 215 SLPEGPSLDDVVKALNDALARADTSAIKETLGQFARDRGMSQVARETGLARESLYRSL 272 + LA + I L ++ + A GL R +L + + Sbjct: 415 YFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQ--IKAADLLGLNRNTLRKKI 470
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 42.3 bits (99), Expect = 2e-06 Identities = 28/185 (15%), Positives = 54/185 (29%), Gaps = 17/185 (9%) Query: 17 AVAFVTIVDGKGDEGIGSAFHIGQGIFVTARHVIEGATIKEIATTKSARLNEEAGGKTAP 76 V ++ + G I S +G+ +T +HV++ A P Sbjct: 89 PVTYIQVEAPTGT-FIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAIN---QDNYP 144 Query: 77 PRRLEIVDGPYFGPDGLDVAVFRVDLGDAPLPAIAVSQHTDASLGENDL--VLSDILVIG 134 + +G D+A+ V A++ N V +I V G Sbjct: 145 NGGFTAEQITKYSGEG-DLAI--VKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTG 201 Query: 135 YPPIPFTTIPSQVVTLGQINAVVRVRHSPVLHFIASAMARGGFSGGAALDQSGTALALVT 194 YP V T+ + + + + GG SG ++ + + Sbjct: 202 YPG------DKPVATMWESKGKITYLKGEAMQY--DLSTTGGNSGSPVFNEKNEVIGIHW 253 Query: 195 ESLGQ 199 + Sbjct: 254 GGVPN 258
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1042 bits (2696), Expect = 0.0 Identities = 427/1044 (40%), Positives = 650/1044 (62%), Gaps = 19/1044 (1%) Query: 3 LPRFFINRPIFAIVLSALMLIAGAIALFRLSLSEYPSITPPTVQVTASYPGANPQVIAET 62 + FFI RPIFA VL+ ++++AGA+A+ +L +++YP+I PP V V+A+YPGA+ Q + +T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VASPLEQSVNGVEGMLYMSSQAATDGRMTLTVTFAQGTDADIAQIQVQNRVSRALPRLPE 122 V +EQ++NG++ ++YMSS + + G +T+T+TF GTD DIAQ+QVQN++ A P LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 123 EVQRIGVVTQKTSPDILMVVHLVSPGKRYDPLYISNYATLQIRDTLARLPGIGDVVVWGA 182 EVQ+ G+ +K+S LMV VS IS+Y ++DTL+RL G+GDV ++G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 183 GEYAMRVWLDPAKVAARGLTAGDVVTAIREQNVQVAAGSVGQQPS-EAASYQVTVSTQGR 241 +YAMR+WLD + LT DV+ ++ QN Q+AAG +G P+ ++ Q R Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 242 LSSEEQFGEIVIKTGDDGQIVRLRDVARVGLGADAYALRSLLNGDPAVAMQIIQRPGANA 301 + E+FG++ ++ DG +VRL+DVARV LG + Y + + +NG PA + I GANA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 302 LDVSNAVHAEMERLRQDFPEGLEYRIAYDPTVFVRASLAAVMMTLLEAIVLVVVVVVLFL 361 LD + A+ A++ L+ FP+G++ YD T FV+ S+ V+ TL EAI+LV +V+ LFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 362 QTWRASIIPLVAVPVSLVGTLAVMYLLGFSLNTLSLFGLVLSIGIVVDDAIVVVENVERH 421 Q RA++IP +AVPV L+GT A++ G+S+NTL++FG+VL+IG++VDDAIVVVENVER Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 422 I-GLGETPKEAARKAMDEVTAPIIAITSVLAAVFIPSAFLSGLMGEFYRQFAVTIAISTV 480 + PKEA K+M ++ ++ I VL+AVFIP AF G G YRQF++TI + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 481 LSAINSLTLSPALAGMLLKSHHAESNRDWLTRGIDFALGWFFRLFNRFFDRASSAYVGAA 540 LS + +L L+PAL LLK AE + G FF FN FD + + Y + Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHE---------NKGGFFGWFNTTFDHSVNHYTNSV 530 Query: 541 RGAIRISGVILILYAALVGMTWVGFQSIPTGFVPAQDKYYLVGIAQLPSGASLDRTEAVV 600 + +G L++YA +V V F +P+ F+P +D+ + + QLP+GA+ +RT+ V+ Sbjct: 531 GKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVL 590 Query: 601 KEMSRIA--AAEPGVESIVAFPGLSVNGFVNLPNAAVVFAMLDPFEQRKDPSLSANAIAG 658 +++ + VES+ G S +G NA + F L P+E+R SA A+ Sbjct: 591 DQVTDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAVIH 648 Query: 659 RLMGKYSQIPDGFVGIFPPPPVPGLGTIGGFKLQIEDRAGAGLEALAKAQGEIMAKASNA 718 R + +I DGFV F P + LGT GF ++ D+AG G +AL +A+ +++ A+ Sbjct: 649 RAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQH 708 Query: 719 P-ELAGMMASFQMNAPQVQVELDRVKAKAQGVPLTAIFETLQVNLGSFYANDFNRFGRTY 777 P L + + + Q ++E+D+ KA+A GV L+ I +T+ LG Y NDF GR Sbjct: 709 PASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVK 768 Query: 778 RVIAQAEERFRAQIDDIARLKVRNAAGEMVPLAALATVVTSSGPDRVMHYNGYPSVDITG 837 ++ QA+ +FR +D+ +L VR+A GEMVP +A T G R+ YNG PS++I G Sbjct: 769 KLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQG 828 Query: 838 GPAPGYSSGQATAAIERIVVETLPDGMMFEWTDLTFQEKQAGNTAMIVFPLAVLLAFLIL 897 APG SSG A A +E + + LP G+ ++WT +++QE+ +GN A + ++ ++ FL L Sbjct: 829 EAAPGTSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCL 887 Query: 898 AAQYNSWSLPFTVLLIAPLALLSAIIGVWLSNGDNNIFTQIAFVVLVGLAAKNAILIVEF 957 AA Y SWS+P +V+L+ PL ++ ++ L N N+++ + + +GL+AKNAILIVEF Sbjct: 888 AALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEF 947 Query: 958 AYK-EEKDGREPLAAVLESARLRLRPILMTSLAFIAGVVPLVMATGAGAEMRHAMGIAVF 1016 A EK+G+ + A L + R+RLRPILMTSLAFI GV+PL ++ GAG+ ++A+GI V Sbjct: 948 AKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVM 1007 Query: 1017 AGMLGVTFFGLILTPVFYVVIRRL 1040 GM+ T + PVF+VVIRR Sbjct: 1008 GGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 90.7 bits (225), Expect = 2e-20 Identities = 68/418 (16%), Positives = 141/418 (33%), Gaps = 22/418 (5%) Query: 643 FEQRKDPSLSANAIAGRLMGKYSQIPDGFVGIFPPPPVPGLGTIGGFKLQIEDRAGAGLE 702 F+ DP ++ + +L +P + + + + + Sbjct: 94 FQSGTDPDIAQVQVQNKLQLATPLLPQEV----QQQGISVEKSSSSYLMVAGFVSDNP-- 147 Query: 703 ALAKAQGEIMAKASNAPELAGM--MASFQMNAPQVQVE--LDRVKAKAQGVPLTAIFETL 758 + ++ L+ + + Q+ Q + LD + + L Sbjct: 148 GTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQL 207 Query: 759 QVNL----GSFYANDFNRFGRTYRVIAQAEERFRAQIDDIARLKVR-NAAGEMVPLAALA 813 +V G+ A+ RF+ ++ ++ +R N+ G +V L +A Sbjct: 208 KVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN-PEEFGKVTLRVNSDGSVVRLKDVA 266 Query: 814 TVVTSSGPDRVM-HYNGYPSVDITGGPAPGYSSGQATAAIERIVVE---TLPDGMMFEWT 869 V V+ NG P+ + A G ++ AI+ + E P GM + Sbjct: 267 RVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYP 326 Query: 870 -DLTFQEKQAGNTAMIVFPLAVLLAFLILAAQYNSWSLPFTVLLIAPLALLSAIIGVWLS 928 D T + + + + A++L FL++ + + P+ LL + Sbjct: 327 YDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAF 386 Query: 929 NGDNNIFTQIAFVVLVGLAAKNAILIVEFAYKE-EKDGREPLAAVLESARLRLRPILMTS 987 N T V+ +GL +AI++VE + +D P A +S ++ + Sbjct: 387 GYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIA 446 Query: 988 LAFIAGVVPLVMATGAGAEMRHAMGIAVFAGMLGVTFFGLILTPVFYVVIRRLVLRRE 1045 + A +P+ G+ + I + + M LILTP + + V Sbjct: 447 MVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEH 504
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.3 bits (102), Expect = 1e-06 Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 2/125 (1%) Query: 72 VIAAVKTVELRPRIGGTLESVTVPEGGLVERGQLLFQIDPRPFEIALQNAEARL--QRAE 129 + + ++ E++P ++ + V EG V +G +L ++ E ++ L R E Sbjct: 90 LTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149 Query: 130 VLFSQGETDLDRSQRLVPSGSISTKTFDDALSRKQERQAQMLEARAAVAAAALDLSYSRL 189 Q + +L F + + R +++ + + L Sbjct: 150 QTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL 209 Query: 190 TAPIA 194 A Sbjct: 210 DKKRA 214 Score = 33.6 bits (77), Expect = 0.001 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 158 DALSRKQERQAQMLEARAAVAAAALDLSYSRLTAPIAGRVDKVLV-TEGNLVTGASGATA 216 + L + ++ + +A S + AP++ +V ++ V TEG +VT TA Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVT-----TA 353 Query: 217 TLLTTIVSVDPVYV 230 L IV D Sbjct: 354 ETLMVIVPEDDTLE 367
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 217 bits (554), Expect = 4e-65 Identities = 111/458 (24%), Positives = 201/458 (43%), Gaps = 56/458 (12%) Query: 24 RRRTFAIISHPDAGKTTLTEKLLLFGGAINLAGQVKAKGERRNTRSDWMKIERDRGISVV 83 + +++H DAGKTTLTE LL GAI G V TR+D +ER RGI++ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKG----TTRTDNTLLERQRGITIQ 57 Query: 84 TSVMTFEFDGLVFNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEARTRKLFEVCR 143 T + +F+++ N++DTPGH DF + YR+L+ +D A+++I A G++A+TR LF R Sbjct: 58 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 144 LRDIPIITFINKMDRESRDVFDLLDEIEKTLALDTTPMTWPVGRGRDFLGTYDILNGGVR 203 IP I FINK+D+ D+ + +I++ L+ + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ--------------------- 156 Query: 204 LLDGGGAKTGAAEQIAIEDLGKRSASLDVAAVKDE-LELVTEACKPFELE-------AFR 255 K + + + + V D+ LE LE F Sbjct: 157 -------KVELYPNMCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFH 209 Query: 256 EGHLTPVYFGSALRNFGVGDLLEGLGRYAPPPRAQDSNLRKIEADEPKMSAFVFKIQANM 315 L PVY GSA N G+ +L+E + + + ++ VFKI+ Sbjct: 210 NCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTHRGQS---------ELCGKVFKIE--Y 258 Query: 316 DPNHRDRIAFARLCSGKLTRGMKARLVRTGKNMSLSAPQFFFAQDRSVADEAFAGDVVGI 375 R R+A+ RL SG L R+ K + ++ + D+A++G++V + Sbjct: 259 SE-KRQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKAYSGEIVIL 316 Query: 376 PNHGTLRIGDTLTEGEDVTFVGVPSFAPEIVR-RVRLGDAMKAKKLKEALQQMSEEG-VV 433 N L++ L + + + +++ V + + L +AL ++S+ ++ Sbjct: 317 QNEF-LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLL 375 Query: 434 QVFRPRDGAPALVGVVGPLQLDVLKARLEAEYQLPVDF 471 + + ++ +G +Q++V A L+ +Y + ++ Sbjct: 376 RYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEI 413
>FLAGELLIN#Flagellin signature. Length = 507 Score = 57.7 bits (139), Expect = 9e-11 Identities = 70/367 (19%), Positives = 127/367 (34%), Gaps = 8/367 (2%) Query: 371 TDGNGNSTVYLQGGTIKDVLTAVDIASGAQTAPVSNGAASLAVTAGSEASKVLSGGQLQI 430 + T+ LQ +K + +G + A V + +S G + V + Sbjct: 149 ANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVD 208 Query: 431 SSGLAGDLKISGTGNALSALGLAGNQGTATSFSVARTATAGGITGKTLSFEAFNGGTAVN 490 + A + A N T + TA T K+ + G Sbjct: 209 VNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTA-----GTAEAK 263 Query: 491 VTIGDGTNGTVKSLADLNSALSVNNLAASIDTTGKLTISASNDYASSTIGSTESGGKIGG 550 G G D + D GK++ + + + + T+ + G Sbjct: 264 AIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADI-TAGAANV 322 Query: 551 TAASLFSTASAPVADVNAQNTRANLVTQYNNIIQQIKTTAQDASFNGVNLLGGDTLKLVF 610 AA+L S+ + + VN Q T + + + + A +A + Sbjct: 323 DAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDL--EANNAVKGESKITVNGAEYTAN 380 Query: 611 NETGKSTLSIQGVTFDPAGLGLSSLKSGKDFIDNANTNKVLSSLNTASSTLRSQASALGS 670 K TL+ + + D G+S+L + +T L+S+++A S + + S+LG+ Sbjct: 381 AAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGA 440 Query: 671 NLSIVQTRQDFSKNLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAVSALSLANSSQQ 730 + + N + L + S + AD E +N Q S L+ AN Q Sbjct: 441 IQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQ 500 Query: 731 SVLQLLR 737 +VL LLR Sbjct: 501 NVLSLLR 507 Score = 44.3 bits (104), Expect = 1e-06 Identities = 52/409 (12%), Positives = 108/409 (26%), Gaps = 5/409 (1%) Query: 14 LSSLQATADLLATTQSRLSSGKKVNSALDNPTNFFTAASLDSRSSDINNLLDGIGNGIQI 73 ++L + L++ RLSSG ++NSA D+ A S + +GI I Sbjct: 14 QNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISI 73 Query: 74 IQAANTGISSLTKLVDSAKSIANQALQSVAGYSSKSSVTTTIAGATADDLRGTSTYSNGL 133 Q ++ + + + ++ QA S S+ I + R ++ Sbjct: 74 AQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFN- 132 Query: 134 AQSIGLQDGQGTPGVVDGDTLLGGVAATKTGGTVGGSGITAGTALSALGANKPVAGDTMT 193 + + + G + V G+ A + Sbjct: 133 --GVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFK 190 Query: 194 VNGRTITFASGGAPDKATLPTGSGVEGQLVTDGKGNSTVFLDSGTVQDVMNAIDLASGVQ 253 T+A G + + +G+ V + + +A + + Sbjct: 191 NVTGYDTYAVGANKYRVDVNSGAVVTDTTA-PTVPDKVYVNAANGQLTTDDAENNTAVDL 249 Query: 254 KVTITGGDATLAPSSGTAAAVTSNALVLSTSTGSDLSISGNNTLLSAFGLNSGATGAGTF 313 T T + A G +I +++ G Sbjct: 250 FKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVT 309 Query: 314 KAERTASPAAGDGVSRANMIQADSTLSINGKTITFKDAAIPANAD-YGFGKVGSQNVITD 372 + A + + + S+ TF D +A + + Sbjct: 310 LTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESK 369 Query: 373 GNGNSTVYLQGGTIKDVLTAVDIASGAQTAPVSNGAASLAVTAGSEASK 421 N Y V A +TA + + A +++ Sbjct: 370 ITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTA 418
>cloacin#Cloacin signature. Length = 551 Score = 29.7 bits (66), Expect = 0.008 Identities = 16/38 (42%), Positives = 18/38 (47%) Query: 4 SEHNSQGADASPGGFRGGRGGAGGRGMGGQGMGGSGVG 41 SE+N G + G GG G G G G GGSG G Sbjct: 41 SENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTG 78
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.027 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%) Query: 381 AERWAVRHLSFALRSG----EMLALVGENGAGKTTLVKLLARLY 420 + + H++ + G + L G G GK+TL+ L L Sbjct: 577 GKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLD 620
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.1 bits (112), Expect = 8e-09 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 2/105 (1%) Query: 7 PRLRVFLADDHPLVLRGMKMLIANDAGLELVGEAADGPSALERAIELKPDVAVLDLWMPG 66 + +ADD + + + AG ++ ++ + D+ V D+ MP Sbjct: 2 TGATILVADDDAAIRTVLNQ-ALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 67 LKGLDVARQFLSACPTSRVLVLTVHEDEAYLRKVLQFGVTGYILK 111 D+ + A P VLV++ K + G Y+ K Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 31.5 bits (71), Expect = 0.010 Identities = 23/139 (16%), Positives = 33/139 (23%), Gaps = 7/139 (5%) Query: 49 PRPISRSIVPKTTPAVTASIPKPSAQLATAAPTAPVIEPTRPHSAPAMVTRKQATRSAVA 108 P P V PA P + Q P EP P Sbjct: 44 PAPAQPISVTMVAPADLE--PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 101 Query: 109 TTTQTSQADAEALEGVIEQVRKRKAADAIQIADTISDPLARKLAEWIILRGENNGVSVER 168 E + ++ V R A+ A P + + Sbjct: 102 KPKPKPVKKVEQPKRDVKPVESRPASPFENTA-----PARPTSSTATAATSKPVTSVASG 156 Query: 169 YRAFVRANPSWPSQTFLRR 187 RA R P +P++ R Sbjct: 157 PRALSRNQPQYPARAQALR 175
>cloacin#Cloacin signature. Length = 551 Score = 40.1 bits (93), Expect = 4e-06 Identities = 28/69 (40%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 30 SIGGGGGGAAGGGGGGGGGGGGGGGSIGGGSIGRGGGGGPAMGGGGGGGIISGGSIGRGG 89 S G G G G GGG G G S G G G G GGG G G +GG G G Sbjct: 15 STSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG--NGGGNGNSG 72 Query: 90 GGAVIGGGG 98 GG+ GG Sbjct: 73 GGSGTGGNL 81 Score = 37.8 bits (87), Expect = 2e-05 Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 7/72 (9%) Query: 27 AQGSIGGGGGGAAGGGGGGGGGGGGG----GGSIGGGSIGRGGGGGPAMGGGGGGGIISG 82 G+I GG G GGG G G G G I GGG G GGG G SG Sbjct: 16 TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN---SG 72 Query: 83 GSIGRGGGGAVI 94 G G GG + + Sbjct: 73 GGSGTGGNLSAV 84 Score = 33.9 bits (77), Expect = 5e-04 Identities = 22/64 (34%), Positives = 27/64 (42%) Query: 34 GGGGAAGGGGGGGGGGGGGGGSIGGGSIGRGGGGGPAMGGGGGGGIISGGSIGRGGGGAV 93 GGG +G GGG G G GGG+ G GG A+ G + + G GG Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Query: 94 IGGG 97 I G Sbjct: 107 ISAG 110 Score = 33.5 bits (76), Expect = 6e-04 Identities = 24/78 (30%), Positives = 26/78 (33%) Query: 43 GGGGGGGGGGGGSIGGGSIGRGGGGGPAMGGGGGGGIISGGSIGRGGGGAVIGGGGPRMG 102 GG G G G S G G G G G G G S + GG G+ I GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 103 GGGMIGAGPRNPGYAGGG 120 G G GG Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 32.8 bits (74), Expect = 0.001 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 20 ATTSLSFAQGSIGGGGGGAAGGGGGGGGGGGGGGGSIGGGSIGRGGG----GGPAMGGGG 75 ++ + + GS G G G G GGG G GGGS GG++ G PA+ G Sbjct: 40 SSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPG 99 Query: 76 GGGI 79 GG+ Sbjct: 100 AGGL 103 Score = 32.4 bits (73), Expect = 0.001 Identities = 26/97 (26%), Positives = 32/97 (32%) Query: 71 MGGGGGGGIISGGSIGRGGGGAVIGGGGPRMGGGGMIGAGPRNPGYAGGGYRGPGYASGG 130 M GG G G +G G G G G G N + GG G + G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 131 YHRGHRGGWHGGGRQWRGGGYWPGAYAGAVVGGALAS 167 H G + GG GG A A AL++ Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALST 97 Score = 30.8 bits (69), Expect = 0.005 Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 7/67 (10%) Query: 29 GSIGGGGGGAAGGG-------GGGGGGGGGGGGSIGGGSIGRGGGGGPAMGGGGGGGIIS 81 +G GGG + G G GGG G G G G G G G G GG Sbjct: 25 TGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAV 84 Query: 82 GGSIGRG 88 + G Sbjct: 85 AAPVAFG 91
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 3e-04 Identities = 15/125 (12%), Positives = 38/125 (30%), Gaps = 9/125 (7%) Query: 371 ADAGPAGDAEEETERPARSSRRPSESRSRAPR--GEDGPREAREPRRPRRGEPRKAPEPS 428 + E T ++ +E P+ + P++ + + EP + +P+ Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 429 EARETVEVQEPRREPREPRKPRREPRPASVPAPAAHASFGSAP-----PSRERESASEPA 483 + E Q + +P +E + + P + ++P Sbjct: 1153 VNIK--EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPT 1210 Query: 484 DHSHL 488 +S Sbjct: 1211 VNSES 1215 Score = 33.1 bits (75), Expect = 0.003 Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 52/207 (25%) Query: 324 HHPDDYVHRVGRTGRAGRLGTAISIVA-----PSDQKSIAAIEKLIGKEIPHADAGPAGD 378 ++P V + +T + T +I A PS+ + IA +++ P A A P+ Sbjct: 981 YNP--EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAP--VPPPAPATPSET 1036 Query: 379 AE------------------EETERPARSSRRPSESRSRAPRG--------------EDG 406 E + TE A++ E++S E Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 407 PREAREPRRPRRGEP------RKAPEPSEARETVEVQEPRREPREPRKPRREPRPASVPA 460 E +E + E + P + QE + +P RE P V Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT-VNI 1155 Query: 461 PAAHASFGSAP----PSRERESASEPA 483 + + P++E S E Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNVEQP 1182
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 39.9 bits (93), Expect = 7e-06 Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 5/120 (4%) Query: 190 NGKGLADVNAALEIDNTAAAPYAFRGMIYSDMGDQDKALADLTRAVKLNPNLPPAHGGLG 249 G +A +N +T Y+ G + A L+ GLG Sbjct: 21 GGGTIAMLNEI--SSDTLEQLYS-LAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLG 77 Query: 250 SVYSKLQEFEKSLAAYNRALELAPNTAAYLSGRGYVHFSLGEYDRA--ITDISQAIAINS 307 + + +++ ++ +Y+ + + GE A ++Q + + Sbjct: 78 ACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADK 137 Score = 38.8 bits (90), Expect = 2e-05 Identities = 21/134 (15%), Positives = 48/134 (35%) Query: 269 LELAPNTAAYLSGRGYVHFSLGEYDRAITDISQAIAINSRFARPYINRGRAYIATNNLSA 328 E++ +T L + + G+Y+ A ++ +R ++ G A Sbjct: 29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88 Query: 329 AIKDFDEALKIEPKNITALLQRAQAFERSRDFAKAQADLQDALKLVPSHPVAVAGIERID 388 AI + ++ K A+ + + A+A++ L A +L+ R+ Sbjct: 89 AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVS 148 Query: 389 AKMGATRPGTERTG 402 + + A + E Sbjct: 149 SMLEAIKLKKEMEH 162 Score = 36.4 bits (84), Expect = 1e-04 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 2/111 (1%) Query: 257 EFEKSLAAYNRALELAPNTAAYLSGRGYVHFSLGEYDRAITDISQAIAINSRFARPYINR 316 ++E + + L + + G G ++G+YD AI S ++ + R + Sbjct: 51 KYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHA 110 Query: 317 GRAYIATNNLSAAIKDFDEA--LKIEPKNITALLQRAQAFERSRDFAKAQA 365 + L+ A A L + L R + + K Sbjct: 111 AECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLEAIKLKKEME 161 Score = 36.1 bits (83), Expect = 2e-04 Identities = 10/64 (15%), Positives = 20/64 (31%) Query: 215 GMIYSDMGDQDKALADLTRAVKLNPNLPPAHGGLGSVYSKLQEFEKSLAAYNRALELAPN 274 G MG D A+ + ++ P + E ++ + A EL + Sbjct: 77 GACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIAD 136 Query: 275 TAAY 278 + Sbjct: 137 KTEF 140
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 28.4 bits (63), Expect = 0.011 Identities = 12/26 (46%), Positives = 15/26 (57%) Query: 109 LKPFAQQTGIDIPDAQLPPGEHFIQI 134 +KPFA GI++PD LP QI Sbjct: 275 IKPFADIAGINVPDTGLPNSASIEQI 300
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.4 bits (76), Expect = 0.001 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 8/137 (5%) Query: 154 ALRLLADILGVSERGEA-LARASEAIFAEVDRVVA-TVPPAARPRIYLARGLDGFETGSR 211 +L +AD+L + E LA+ + I + R V P + R + F Sbjct: 137 SLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVF---GP 193 Query: 212 GSINTEIIERVGAVNVVDGVREAGGLARVSPEQVIAWAPDTIITIDPA---VQRMILERP 268 S+ EI++ G N G G VS +++ A+ ++ D ++ P Sbjct: 194 NSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATP 253 Query: 269 EWQVVPAVKMKRVFLLP 285 WQ +P V+ R +P Sbjct: 254 LWQAMPFVRAGRFQRVP 270
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.003 Identities = 17/106 (16%), Positives = 36/106 (33%) Query: 19 RKHWKAYLIEGILLLILGFAAIVLPLLASLAIAIVLGWMFLVSGVAGIVLSFWARQAPGF 78 + +W I + + GF L L I + L+ V + ++ Sbjct: 10 KYYWYCQGIGWGVYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWL 69 Query: 79 WWSLASAILAVIAGIILIAMPVQGIVTLTFVVGIYFLAEGVATIMY 124 ++ IL V+ ++I M T + + + + VA + Sbjct: 70 KLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLP 115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.5 bits (131), Expect = 7e-12 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 5/117 (4%) Query: 5 KAVILVVEDGTMIRMGALDLVLAAGYEALEARNADEAIRALETRDDVDLVFTDVQVPGTM 64 A ILV +D IR + AGY+ NA R + D DLV TDV +P Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA-AGDGDLVVTDVVMPD-E 60 Query: 65 DGIKLSHYIRDRWP--PVKLIVASGDAILEESSLPTGSRIF-SKPYDEHTITDAMAR 118 + L I+ P PV ++ A + + G+ + KP+D + + R Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>cloacin#Cloacin signature. Length = 551 Score = 36.2 bits (83), Expect = 6e-04 Identities = 35/128 (27%), Positives = 39/128 (30%), Gaps = 12/128 (9%) Query: 79 GGGGAGTTGGQGGTSLYDAGGAGGSTPGADGAAGSMDFWGFGSGGGGGAHGYVGATLPTS 138 GG G G G TS GG G G + GS W + GG G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG--WSSENNPWGGGSGS-GIHWGGG 59 Query: 139 GVRGGAGGKGGLGDTSKINHDATEAGGGGAGGYGAVVTGSGLLGTLTTSVYGGSGGAGGD 198 G GG G G S G GG A G T G + Sbjct: 60 SGHGNGGGNGNSGGGS---------GTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Query: 199 ALNDAAAG 206 AL+ A A Sbjct: 111 ALSAAIAD 118 Score = 32.8 bits (74), Expect = 0.007 Identities = 35/128 (27%), Positives = 46/128 (35%), Gaps = 22/128 (17%) Query: 57 GGDDQLTDPGSPGEDGS--GCCGGGGGGAGTTGGQGGTSLYDAGGAGGSTPGADGAAGSM 114 GGD + + G+ G+ G G G G G + G G +S + G G +GS Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG---------GGSGSG 53 Query: 115 DFWGFGSGGGGGAHGYVGATLPTSGVRGGAGGKGGLGDTSK--INHDATEAGGGGAGGYG 172 WG GSG G G G GG G GG + GAGG Sbjct: 54 IHWGGGSGHGNGGGN---------GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Query: 173 AVVTGSGL 180 ++ L Sbjct: 105 VSISAGAL 112
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.6 bits (191), Expect = 8e-17 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 3/155 (1%) Query: 702 SVLVVDDDENNRFVLSGLLDVKGHRVREAADGVQALALLSENPVDVVLVDLEMPGLSGME 761 ++LV DDD R VL+ L G+ VR ++ ++ D+V+ D+ MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 762 LVRYIRALGGKGATVPIVAITANVTAGVVERCVQAGMDGYLSKPIMPEDLQRTIDAVCAG 821 L+ I+ +P++ ++A T + + G YL KP +L I A Sbjct: 65 LLPRIKKA---RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 822 RPPAQSDSQMQRDDFLPSLQRELGAETVERLVEQA 856 S + D +P + R + + R++ + Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARL 156
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 2e-19 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 5 RPSVLLVEDEPFVQTLLAAYLEKEGVSVTAASTAAEMRAALRLPGQPIDAIALDLGLPDE 64 ++L+ +D+ ++T+L L + G V S AA + + D + D+ +PDE Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA--AGDGDLVVTDVVMPDE 60 Query: 65 EGLALLRQLRTR-LNIPICISTRDNSAASRNVAAELGVDDYLVKPFHPRQLIASLMRLLG 123 LL +++ ++P+ + + N+ + A+E G DYL KPF +LI + R L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 124 RNGERSAPLR 133 R + L Sbjct: 121 EPKRRPSKLE 130
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 69.1 bits (169), Expect = 5e-15 Identities = 47/281 (16%), Positives = 93/281 (33%), Gaps = 43/281 (15%) Query: 102 FQFEIDRLQAALAAAQQNVPQLKSSFDQASAGVEKATAQYNLAKADLQRQQDLFSKQVVA 161 + + Q + N+ + ++ A + + + K+ L L KQ +A Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 162 QAALDRAQRNAETAEQVVAEASAAENRARLA--------------YQSNIGSDNT----A 203 + A+ + A + + + +++ I Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 204 VAQARQQLAAATYNLDESIVRAPCDGYAVNLQL-VPGAIVSAAASVLPFVCDRDQANLGM 262 + +LA S++RAP L++ G +V+ A +++ V + D + Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 263 VVASFMQGPYLQIRPGEYAEVIFPMYPGR---VIPGKVVSTIDIASEGQLTATGLFPGIG 319 +V + G I G+ A + +P + GKV + A E Q GL Sbjct: 371 LVQNKDIG---FINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQ--RLGLV---- 421 Query: 320 SPGNTRFAVRIRLDDAE------GRRLPAGMQGDAAIYSGS 354 F V I +++ L +GM A I +G Sbjct: 422 ------FNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGM 456
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.4 bits (92), Expect = 3e-05 Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 15/122 (12%) Query: 255 TAPRDGVVLERSA-IEGMRANVGDVLFRIA-DVSAVWAVVDVAERDLGSIAVGQAVRIRA 312 AP V + EG + L I + + V +D+G I VGQ I+ Sbjct: 331 RAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKV 390 Query: 313 RAFANRIF---AGVVKVIYP-QVSRETRAV--RVRIELD-------NPDLALLPDMYVDA 359 AF + G VK I + + + V I ++ N ++ L M V A Sbjct: 391 EAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTA 450 Query: 360 EI 361 EI Sbjct: 451 EI 452 Score = 30.6 bits (69), Expect = 0.013 Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 10/147 (6%) Query: 144 PVLVSVKAPGVIQLDERRVSVIAMRSESFVRKVEDVTTGTRVKAGQPLMEI----YSAAI 199 V + A G + R + + S V+++ V G V+ G L+++ A Sbjct: 79 QVEIVATANGKLTHSGRSKEIKPI-ENSIVKEII-VKEGESVRKGDVLLKLTALGAEADT 136 Query: 200 AAAAADYLSTIASKTTAGNETFGRGSRQR----LINLNVPEAAIAALEQTRIAPVTVQWT 255 + L +T + + L + + + + Q++ Sbjct: 137 LKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFS 196 Query: 256 APRDGVVLERSAIEGMRANVGDVLFRI 282 ++ + ++ RA VL RI Sbjct: 197 TWQNQKYQKELNLDKKRAERLTVLARI 223
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 678 bits (1751), Expect = 0.0 Identities = 218/1046 (20%), Positives = 431/1046 (41%), Gaps = 50/1046 (4%) Query: 14 LLVLFGAGFAAAAGLYALLHLPLDAIPDLSDTQVVIYTEYPGQAPQVIEDQVTYPLTTAM 73 + A AG A+L LP+ P ++ V + YPG Q ++D VT + M Sbjct: 10 IFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNM 69 Query: 74 LTVPKSKVVRGFSF-FGASFVYVIFEDGTDIYWARSRVLEFLNGAAARLPAGV-APTIGP 131 + + S G+ + + F+ GTD A+ +V L A LP V I Sbjct: 70 NGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISV 129 Query: 132 DATGVGWVYQYAVVS--KELNLADTRSLQDWTLRFALAKAEGVAEVASIGGFVKQYNVVL 189 + + ++ VS D ++ L++ GV +V G + L Sbjct: 130 EKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-QYAMRIWL 188 Query: 190 DPQRMRDRGITMQRMRETIRSSNADVGGRTVELS------EFEYVIRGKGYLKDINDLGN 243 D + +T + ++ N + + + + I + K+ + G Sbjct: 189 DADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGK 248 Query: 244 IVLKTS-NGTPVLLRDVARVELGPDERRGIAELNGEGEVASGIVLQRFGVNALDVIENVK 302 + L+ + +G+ V L+DVARVELG + IA +NG+ A + G NALD + +K Sbjct: 249 VTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGANALDTAKAIK 307 Query: 303 KRFKEIASSLPKSVEIVPVYDRSNLIYAAVETLKTTLLEESLVVAAVCIVFLLHVRSALV 362 + E+ P+ ++++ YD + + ++ + TL E ++V V +FL ++R+ L+ Sbjct: 308 AKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLI 367 Query: 363 AILMLPVGVLMAFGAMKLIGLGSNIMSLGGIAIAIGAMVDAAIVMIENAHKHLERAEPGR 422 + +PV +L F + G N +++ G+ +AIG +VD AIV++EN + + E Sbjct: 368 PTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM--MEDKL 425 Query: 423 SRVSVLIEAASEVGPALFFSLLIITVSFMPIFTLESQEGRLFSPLAFTKTFAMAAAALLS 482 ++ S++ AL ++++ F+P+ G ++ + T AMA + L++ Sbjct: 426 PPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVA 485 Query: 483 VTLVPALMVIFVRGRFVPEHKNI---------VNRALIFVYRPVISGVLRAKVAVILLAL 533 + L PAL ++ H+N + Y + +L + +L+ Sbjct: 486 LILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYA 545 Query: 534 VVLGVSIWPARQLGTEFMPALDEGTLLYMPTTLPGISITKAGELL-QMQDRIIRG-FPEV 591 +++ + +L + F+P D+G L M G + + ++L Q+ D ++ V Sbjct: 546 LIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANV 605 Query: 592 ASVYGKAGRAATATDPAPIEMFETVINLKPKEQW-RPGLTTDGLIAELDKALQFPGVSNA 650 SV+ G + + F ++LKP E+ + + +I L Sbjct: 606 ESVFTVNGFSFSGQAQNAGMAF---VSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFV 662 Query: 651 WTMPIKARIDMLSTGIRTPVGVKVMGTDLVEIDKLAKQIERVLKAVPGTLSAY-AERAIG 709 + A +++ + + G + + Q+ + P +L + Sbjct: 663 IPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLED 722 Query: 710 GYYLEITPDRAALARYGLLIQDMQDAIAIALGGQTVTTTVEGRQRFSVNMRYPRELRDNP 769 ++ D+ G+ + D+ I+ ALGG V ++ + + ++ + R P Sbjct: 723 TAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLP 782 Query: 770 KAIASDVLVPLPGGGAVPLGEVATVTPTRGPTSIRTENGQLATYIYVDIRDRDLGGYVAD 829 + + + V G VP T G + NG + I G + Sbjct: 783 EDVDK-LYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQG----EAAPGTSSG 837 Query: 830 AKRAVQASIA--FPQGSYVVWSGQYEYLERAAARLKIVVPVTLMIIFLLLYLNFRSLTET 887 A+ ++A P G W+G + + +V ++ +++FL L + S + Sbjct: 838 DAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIP 897 Query: 888 LIVMLSLPFALVGGLWMMWALGFNLSVAVAVGFIALAGVAAETGVVMLIYLDHALDAMKA 947 + VML +P +VG L V VG + G++A+ ++++ + ++ Sbjct: 898 VSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLME---- 953 Query: 948 TRAAEGRPLSLSDLHAAIMEGAVDRVRPKMMTVVAIMAGLLPILWSTGAGSEIMQRIAVP 1007 EG+ + A + R+RP +MT +A + G+LP+ S GAGS + + Sbjct: 954 ---KEGKG-----VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIG 1005 Query: 1008 MIGGMVSSTLLTLIVIPAIYGLIKGF 1033 ++GGMVS+TLL + +P + +I+ Sbjct: 1006 VMGGMVSATLLAIFFVPVFFVVIRRC 1031
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.5 bits (63), Expect = 0.015 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 7/37 (18%) Query: 110 VLTMLDGRAGGSGGGGGYGADDSSGGDFGSSGPSSSA 146 ++T+L+G GSG GGG GG GS SS+A Sbjct: 21 IITLLNGTPDGSGSGGG-------GGKGGSKSESSAA 50
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 41.1 bits (96), Expect = 2e-06 Identities = 52/247 (21%), Positives = 79/247 (31%), Gaps = 54/247 (21%) Query: 1 MKKFLLGSVALIALGAAPAMAADLAARPYAKAPPIIAAVYDWSGFYIGANGGWGTSRKSW 60 MKK +A+ A A A A + +Y GA GW Sbjct: 1 MKKTA---IAIAVALAGFATVA--------------QAAPKDNTWYTGAKLGWSQ----- 38 Query: 61 DFYTVGGLAAEGSHDASGATAGGQIGYNWQAGSWVFGLEAQGNW---ADFKGSNVTLLGG 117 ++ G + G + AG GY G E +W +KGS G Sbjct: 39 -YHDTGFINNNGPTHENQLGAGAFGGYQVNPY---VGFEMGYDWLGRMPYKGSVE---NG 91 Query: 118 LFDNQSRIDAFGLFTGRVGYAWNNAL-LYAKGGAAVVNDKYDFIRRADGFVTGTASETRW 176 + Q T ++GY + L +Y + G V V G +T Sbjct: 92 AYKAQG-----VQLTAKLGYPITDDLDIYTRLGGMVWRADTKSN------VYGKNHDTGV 140 Query: 177 GAAVGAGFEYGFTPNWSFAVEYDHLFLDKKDVTFTNTAVERIKQDADIVTARINYRWGG- 235 G EY TP + +EY + + D +++ ++YR+G Sbjct: 141 SPVFAGGVEYAITPEIATRLEYQWT------NNIGDAHTIGTRPDNGMLSLGVSYRFGQG 194 Query: 236 ---PVVA 239 PVVA Sbjct: 195 EAAPVVA 201
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 83.6 bits (207), Expect = 7e-25 Identities = 41/84 (48%), Positives = 61/84 (72%) Query: 20 LAAALAEEHELSKKQTEAILGDLVARITKHLKKGERIRIVGLGILQVRKRAARTGRNPAT 79 L A +AE EL+KK + A + + + ++ +L KGE+++++G G +VR+RAAR GRNP T Sbjct: 7 LIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNPQT 66 Query: 80 GETIQIKASKKVAFRAAKELKEAI 103 GE I+IKASK AF+A K LK+A+ Sbjct: 67 GEEIKIKASKVPAFKAGKALKDAV 90
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 26.2 bits (57), Expect = 0.026 Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 22 APIQKYGDPDKEKTQGEIEAEKRAEKAYQRSLGN 55 A + + +KEK + EI+ ++ KAY +LGN Sbjct: 408 AKLDNLSEKEKEKFRTEIKDFQKDSKAYLDALGN 441
>PF02370#M protein repeat Length = 168 Score = 34.7 bits (79), Expect = 6e-04 Identities = 24/124 (19%), Positives = 57/124 (45%) Query: 215 QVEKRIRSRVKRQMEKTQREYYLNEQMKAIQKELGDDEGRDELADLEEKIAKTKLSKEAR 274 + + + R+ + + +RE ++++ ++KE + + R E + E+ + K +E + Sbjct: 45 ENDPQYRALMGENQDLRKREGQYQDKIEELEKERKEKQERPERREKFERQHQDKHYQEQQ 104 Query: 275 EKAQHELKKLRQMSPMSAEATVVRNYLDWLLSIPWNKKSKVKKDLEAAQATLDSDHYGLE 334 +K Q E ++L A+ + + L+ KK+LE L ++H L+ Sbjct: 105 KKHQQEQQQLEAEKQKLAKEKQISDASRQGLNRDLEASRAAKKELEPKHQKLGTEHQKLK 164 Query: 335 KVKE 338 + K+ Sbjct: 165 EEKQ 168
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.7 bits (79), Expect = 6e-04 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 9/56 (16%) Query: 32 VVFVGPSGCGKSTTLRMIAGLEDISDGDIVIGGDVVNDVPPKDRDIAMVFQNYALY 87 VV G G GKST + + GL+ SD IG +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG---------TGKDSYEQIAGIVAY 645
>PF06580#Sensor histidine kinase Length = 349 Score = 28.7 bits (64), Expect = 0.038 Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 4/117 (3%) Query: 129 LFAITAVFFKALLGFIVAHFVHNVPAKGQRKWRGMLLVPWVIPPAMSTLAWLWLFDPSYS 188 L ++ +L+G ++ H + + M + + PA + +W + Sbjct: 39 LHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVAN--T 96 Query: 189 AFNYTLGLFGAGPIPWTGDAA--WARFSVILVNIWYGAPFFMIMYLAALKSVPEQLY 243 + L P+ +T A V++ +W F + ++ +Q Sbjct: 97 SIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWK 153
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 101 bits (252), Expect = 6e-28 Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 3/203 (1%) Query: 5 LASRIALVTGASRGIGYATARALAKAGAHVIAVAKTQGGLEELDDAVRNDGGHAITLVPV 64 + +IA +TGA++GIG A AR LA GAH+ AV LE++ +++ + HA P Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF-PA 64 Query: 65 DLTDFEAIARLGASIHERHGKLDVLVGNAGIAGPSSPLGHIEMKSWTGVIGLNLTANFQL 124 D+ D AI + A I G +D+LV AG+ P + + + W +N T F Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 125 IRCMEPLLRMSDAGRAVFLTSRAGGKAPAYRGPYAASKAALDTLVQVWAKEVVNTTPIRV 184 R + + +G V + S G YA+SKAA + E+ IR Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN-IRC 182 Query: 185 NLFDPGPTRTKLRGTIMPGEDPE 207 N+ PG T T ++ ++ E+ Sbjct: 183 NIVSPGSTETDMQWSLWADENGA 205
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.5 bits (79), Expect = 3e-05 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 46 DIALLPAAQGRCIGREVIAALAVAARSIEARRLTLSVQMSNDRAQSLYRRLGFIDMGG 103 DIA+ + + +G ++ A+ L L Q N A Y + FI +G Sbjct: 94 DIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI-IGA 150
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 37.7 bits (87), Expect = 3e-04 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 8/104 (7%) Query: 77 SVSFSSPGNPDDGKGFNEAYLMSFATGDTIHYSVTISTIAGTIDAGFIADYSFGIPTTFN 136 S S GN D G TG+ +V + I I A + N Sbjct: 165 KTSADSLGNIDQG-SL-------IETGERCVLTVPSTDIEKEILDLAAATERLNLTDALN 216 Query: 137 NNLSGAGFHTSTSGSYTLSASDVMKINSNPDGSWTPGLSSQAID 180 +N +G + +S SY + + + G L+S+ +D Sbjct: 217 SNPAGNLYDWRSSNSYPWTQKLNLHLTITATGQKYRILASKIVD 260
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 2e-04 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 5/147 (3%) Query: 197 ANDKKAAKTAAAKRSVKKSVKQPAGKASAKKASKDKSVSDKTSSKKASARKAAKKASTKA 256 N A SV + ++ A A + +T+ A K K K Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN 1054 Query: 257 PAKAVTAKKAAKKAAAGVKKAAKVTKKTAKKPAKAPAKKATGKKVAGKAPAKAKSQAKVD 316 A ++ A K K +T + A++ ++ + K A + + K Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEV-AQSGSETKETQTTETKETATVEKEEK-- 1111 Query: 317 LKAKSNAKAKAETPKGGAKAGSKSGKK 343 AK + E PK ++ K + Sbjct: 1112 --AKVETEKTQEVPKVTSQVSPKQEQS 1136
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 441 bits (1136), Expect = e-155 Identities = 195/435 (44%), Positives = 280/435 (64%), Gaps = 16/435 (3%) Query: 14 FSALGKAEELKKRIWFTLGALLVYRLGTYIPLPGIDPTVWEQVFKSQAG--GILGMFNMF 71 F+ + +L+K++ FTL ++VYR+GT+IP+PG+D +Q + +G G+ G+ NMF Sbjct: 5 FARAFRTPDLRKKLLFTLAIIVVYRVGTHIPIPGVDYKNVQQCVREASGNQGLFGLVNMF 64 Query: 72 AGGGIHRMAIFALNIMPYISASIIVQLLTTVSPQLEALKKEGESGRKTLNQYTRYLTVIL 131 +GG + ++ IFAL IMPYI+ASII+QLLT V P+LEALKKEG++G + QYTRYLTV L Sbjct: 65 SGGALLQITIFALGIMPYITASIILQLLTVVIPRLEALKKEGQAGTAKITQYTRYLTVAL 124 Query: 132 AAFQSYGIAVGLQGA---------GNVVSEPGAFFLLSTAITLTGGTMFLMWLGEQITSR 182 A Q G+ + A G +V + F ++ I +T GT +MWLGE IT R Sbjct: 125 AILQGTGLVATARSAPLFGRCSVGGQIVPDQSIFTTITMVICMTAGTCVVMWLGELITDR 184 Query: 183 GIGNGISLIILAGIVAELPSALANMLELGRQGALSTGLILVVLVMAVVVIAFIVFMERAQ 242 GIGNG+S+++ I A PSAL + + G V+ V ++++A +VF+E+AQ Sbjct: 185 GIGNGMSILMFISIAATFPSALWAIKKQGTLAGGWIEFGTVIAV-GLIMVALVVFVEQAQ 243 Query: 243 RRLLIQYPKRQVGNKMFEGQSSHLPLKLNTSGVIPPIFASSLLLLPTTIASFNSGTGPDW 302 RR+ +QY KR +G + + G S+++PLK+N +GVIP IFASSLL +P +A F G W Sbjct: 244 RRIPVQYAKRMIGRRSYGGTSTYIPLKVNQAGVIPVIFASSLLYIPALVAQFAGGNS-GW 302 Query: 303 FQWIVTQFGHGR-PLFLLFYIAMIVFFAFFYTAIVFNPTETADNLKKHGGFIPGIRPGER 361 W+ G P++++ Y +IVFFAFFY AI FNP E ADN+KK+GGFIPGIR G Sbjct: 303 KSWVEQNLTKGDHPIYIVTYFLLIVFFAFFYVAISFNPEEVADNMKKYGGFIPGIRAGRP 362 Query: 362 TAEYIDFVLSRITAVGAIYLAIVCLIPEGLISYASVP--FYFGGTSLLIVVSVTMDTVAQ 419 TAEY+ +VL+RIT G++YL ++ L+P + F FGGTS+LI+V V ++TV Q Sbjct: 363 TAEYLSYVLNRITWPGSLYLGLIALVPTMALVGFGASQNFPFGGTSILIIVGVGLETVKQ 422 Query: 420 VQGYLLAHQYEGLIR 434 ++ L YEG +R Sbjct: 423 IESQLQQRNYEGFLR 437
>PF04183#IucA / IucC family Length = 580 Score = 28.3 bits (63), Expect = 0.005 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%) Query: 65 HLSNIAIVGKDGKPTRVGFKVLADGKKVRIAKSSGAEIDG 104 H NI + K+G P RV K +R+ K E+D Sbjct: 422 HGQNITLAMKEGVPQRVLLKDFQGD--MRLVKEEFPEMDS 459
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 25.5 bits (56), Expect = 0.017 Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Query: 6 TGDIRAMSDDQMDDAILNLKKERFNLRFQRATGQ 39 + +R + D+ D+AI+N + + AT + Sbjct: 184 SSSVR-IGGDRFDEAIINYVRRNYGSLIGEATAE 216
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 85.3 bits (211), Expect = 5e-20 Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 19/155 (12%) Query: 14 NIGTIGHVDHGKTSLT-------AAITKVLAETGGATFTAYDQIDKAPEEKARGITISTA 66 NIG + HVD GKT+LT AIT++ + G T T D E+ RGITI T Sbjct: 5 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRT-----DNTLLERQRGITIQTG 59 Query: 67 HVEYETTNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV 126 ++ N +D PGH D++ + + +DGAIL++SA DG QTR R++ Sbjct: 60 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 119 Query: 127 GVPALVVFLNKCDM--VDDPELLELVEMEVRELLS 159 G+P + F+NK D +D L V +++E LS Sbjct: 120 GIPT-IFFINKIDQNGID----LSTVYQDIKEKLS 149
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 617 bits (1593), Expect = 0.0 Identities = 181/670 (27%), Positives = 298/670 (44%), Gaps = 63/670 (9%) Query: 11 RNFGIMAHIDAGKTTTTERILYYTGKSHRIGEVHEGAATMDWMEQEQERGITITSAATTA 70 N G++AH+DAGKTT TE +LY +G +G V +G D E++RGITI + T+ Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63 Query: 71 FWNGKRLNIIDTPGHVDFTIEVERSLRVLDGAVCVLDSNQGVEPQTETVWRQGDKYKVPR 130 W ++NIIDTPGH+DF EV RSL VLDGA+ ++ + GV+ QT ++ K +P Sbjct: 64 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT 123 Query: 131 IVFANKMDKTGADFFKCLQDIIDRLGAKPVAIQLPIGSESNFKGLIDLVRMKAVVWTDES 190 I F NK+D+ G D QDI ++L A ++V + V Sbjct: 124 IFFINKIDQNGIDLSTVYQDIKEKLSA-------------------EIVIKQKVELYPNM 164 Query: 191 LGAKFEDAEIPEDLLEQAKEYREKMIEAAVELDDDAMAAYLDGNEPEEATLKRLIRKAVL 250 F ++E + +E +DD + Y+ G E L++ Sbjct: 165 CVTNFTESE---------------QWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFH 209 Query: 251 TGAFYPVLCGSAFKNKGVQPLLDAVVDYLPSPVDVPAIKGIDDDGNEVVRQADDKEPLAL 310 + +PV GSA N G+ L++ + + S + L Sbjct: 210 NCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH------------------RGQSELCG 251 Query: 311 LAFKIMDDPFVGTITFCRIYSGVLQSGTGVVNSTREKKERIGRMLLMHANNREDIKEAYA 370 FKI + + R+YSGVL V S +EK +I M I +AY+ Sbjct: 252 KVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGELCKIDKAYS 310 Query: 371 GDIVALAG--LK-EARTGDTLCDPAKPVILEKMEFPEPVIEIAIEPKSKADQEKLGVALA 427 G+IV L LK + GDT P + E++E P P+++ +EP +E L AL Sbjct: 311 GEIVILQNEFLKLNSVLGDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLLDALL 366 Query: 428 KLAAEDPSFRVSTDIESGQTILKGMGELHLDIKVDILRRTYKVDANIGAPQVAFRERITK 487 +++ DP R D + + IL +G++ +++ +L+ Y V+ I P V + ER K Sbjct: 367 EISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERPLK 426 Query: 488 RAEVDYTHKKQTGGTGQFAAVKFIVEPNEPGKGYEFESKIVGGAVPKEYIPGVEKGIESV 547 +AE YT + +A++ V P G G ++ES + G + + + V +GI Sbjct: 427 KAE--YTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYG 484 Query: 548 LSSGVVAGFPVVDVKVSLIDGKYHDVDSSALAFEIASRAAFREALQKGKSVLLEPIMKVE 607 G + G+ V D K+ G Y+ S+ F + + + L+K + LLEP + + Sbjct: 485 CEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFK 543 Query: 608 VVTPEDYTGSVIGDLNSRRGQIQGQDMRGNANVINAMVPLMNMFGYVNNLRSMSQGRATF 667 + P++Y D I ++ N +++ +P + Y ++L + GR+ Sbjct: 544 IYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGRSVC 603 Query: 668 TMQFDHYAEA 677 + Y Sbjct: 604 LTELKGYHVT 613
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 46.8 bits (111), Expect = 2e-08 Identities = 49/194 (25%), Positives = 74/194 (38%), Gaps = 31/194 (15%) Query: 47 FYIGGNVGGAFAGSNNIQSDAGR-----FMGGVQGGFDYQFAPNWVVGLEAQYSWMASNN 101 +Y G +G + ++ G G GG YQ P VG E Y W Sbjct: 28 WYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGG--YQVNPY--VGFEMGYDW----- 78 Query: 102 TGVLFPLGSVATENTRGLG-SVTGRLGYSWGPAL-LYAKGGYAFRDSSLGVNTAAGVQSA 159 G + GSV + G +T +LGY L +Y + G + N Sbjct: 79 LGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTKSN-------V 131 Query: 160 YTTSGNRNDGYTVGAGLEYMFAPSWSAKVEYQYYKFDNTSFTGGPADVVGTTFRNDDHTV 219 Y + + G+EY P + ++EYQ+ + G A +GT R D+ + Sbjct: 132 YGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWT----NNI--GDAHTIGT--RPDNGML 183 Query: 220 KAGINYRFGWGGPA 233 G++YRFG G A Sbjct: 184 SLGVSYRFGQGEAA 197
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 5e-17 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 5/106 (4%) Query: 10 RFLVCDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMFSHAAPDIVITDWSMPIFDGL 69 LV DD+ +R +L L S +V + AT + D+V+TD MP + Sbjct: 5 TILVADDDAAIRTVLNQAL-SRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 70 ELAQMIRQPDSKANPFVPIIMLTAHSEKRRVTLARDAGVTEFLAKP 115 +L I+ KA P +P+++++A + A + G ++L KP Sbjct: 64 DLLPRIK----KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105
>PF01206#SirA family protein Length = 76 Score = 77.9 bits (192), Expect = 7e-23 Identities = 30/69 (43%), Positives = 41/69 (59%) Query: 18 LDLTGLKCPLPVLKARKALTTLRVGDRLEVHCTDPMSLIDIPVMIQETGDRLESTGRSEG 77 LD TGL CPLP+LKA+K L T+ G+ L V TDP S+ D ++TG L +G Sbjct: 8 LDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKEEDG 67 Query: 78 TIVFVIEKA 86 T F +++A Sbjct: 68 TYHFRLKRA 76
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1071 bits (2771), Expect = 0.0 Identities = 446/570 (78%), Positives = 503/570 (88%) Query: 1 MSVKISRSVYADMFGPTTGDRVRLADTDLIIEVEKDFTTYGEEVKFGGGKVIRDGMGQSQ 60 MS ++SR+ YA+MFGPT GD+VRLADT+L IEVEKDFTT+GEEVKFGGGKVIRDGMGQSQ Sbjct: 1 MSYRMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQ 60 Query: 61 VTNKDGAADTVITNALIVDHWGIVKADVAIKAGMISAIGKAGNPDIQPGVDIIIGPGTDV 120 VT + GA DTVITNALI+DHWGIVKAD+ +K G I+AIGKAGNPD+QPGV II+GPGT+V Sbjct: 61 VTREGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEV 120 Query: 121 IAGEGKILTAGGFDSHIHFICPQQIEHALMSGVTTMLGGGTGPSHGTFATTCTPGPWHIG 180 IAGEGKI+TAGG DSHIHFICPQQIE ALMSG+T MLGGGTGP+HGT ATTCTPGPWHI Sbjct: 121 IAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIA 180 Query: 181 RMIQSFDAFPVNLGISGKGNAALPGALIEMVEGGACALKLHEDWGTTPAAIDNCLTVADD 240 RMI++ DAFP+NL +GKGNA+LPGAL+EMV GGA +LKLHEDWGTTPAAID CL+VAD+ Sbjct: 181 RMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADE 240 Query: 241 HDVQVMIHSDTLNESGFVEDTIKAFKGRTIHAFHTEGAGGGHAPDIIKVAGLENVLPSST 300 +DVQVMIH+DTLNESGFVEDTI A KGRTIHA+HTEGAGGGHAPDII++ G NV+PSST Sbjct: 241 YDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSST 300 Query: 301 NPTRPFTRNTIDEHLDMLMVCHHLDPSIAEDLAFAESRIRKETIAAEDILHDLGALSMMS 360 NPTRP+T NT+ EHLDMLMVCHHL P+I ED+AFAESRIRKETIAAEDILHD+GA S++S Sbjct: 301 NPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIIS 360 Query: 361 SDSQAMGRLGEVIIRTWQTADKMKKQRGSLSQDSARNDNFRVKRYIAKYTINPAIAHGVS 420 SDSQAMGR+GEV IRTWQTADKMK+QRG L +++ NDNFRVKRYIAKYTINPAIAHG+S Sbjct: 361 SDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLS 420 Query: 421 KLIGSVETGKMADLVLWSPAFFGVKPDCIVKAGMIVAAPMGDPNASIPTPQPVHYQPMFG 480 IGS+E GK ADLVLW+PAFFGVKPD ++ G I AAPMGDPNASIPTPQPVHY+PMFG Sbjct: 421 HEIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFG 480 Query: 481 AYGRALTASSVVFTSQAAAAGHLARDLGIAKALYPVSNVRGGISKKSMIHNDATPNIEVD 540 AYGR+ T SSV F SQA+ LA LG+AK L V N RGGI K SMIHN TP+IEVD Sbjct: 481 AYGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVD 540 Query: 541 PETYEVRADGELLTCAPAEVLPMAQRYFMY 570 PETYEVRADGELLTC PA VLPMAQRYF++ Sbjct: 541 PETYEVRADGELLTCEPATVLPMAQRYFLF 570
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.004 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Query: 19 GVSIAAEPG-KVTCVL---GRNGVGKTSLLRAMVGQQPIASGSIQF 60 V+ EPG K + G G+GK++L+ +VG + Sbjct: 584 HVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 61.8 bits (150), Expect = 5e-15 Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 1 MMTVVAIMAGLLPIMWSTGTSSEIMQRIAVPMIGGMVSSTLLTLIVIPAIFGLLK 55 +MT +A + G+LP+ S G S + + ++GGMVS+TLL + +P F +++ Sbjct: 975 LMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIR 1029 Score = 36.7 bits (85), Expect = 3e-06 Identities = 12/54 (22%), Positives = 29/54 (53%) Query: 1 MMTVVAIMAGLLPIMWSTGTSSEIMQRIAVPMIGGMVSSTLLTLIVIPAIFGLL 54 + + + A +P+ + G++ I ++ ++ ++ M S L+ LI+ PA+ L Sbjct: 443 VGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL 496
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 53.7 bits (129), Expect = 6e-12 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 9/67 (13%) Query: 20 VSLPFAMVSGLWLMWWLGFNLSVAAAVGFIALAGVAAETGVVMLMYLSQAL--------- 70 + +P +V L V VG + G++A+ ++++ + + Sbjct: 902 LVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVE 961 Query: 71 AALQAQR 77 A L A R Sbjct: 962 ATLMAVR 968
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 762 bits (1968), Expect = 0.0 Identities = 221/1070 (20%), Positives = 426/1070 (39%), Gaps = 69/1070 (6%) Query: 8 FSVRQRWLVMIGVLLMAAFGAWNFSRLPIDAVPDITNVQVQINTNAPGYSPLEVEQRITF 67 F +R+ + +++ GA +LP+ P I V ++ N PG V+ +T Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63 Query: 68 PIETAMGGLPNLVNTRSLS-RYGLSQVTIVFKDGIDIYFARQLVNERVQRVKDMLPTGIE 126 IE M G+ NL+ S S G +T+ F+ G D A+ V ++Q +LP ++ Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123 Query: 127 TAMGPVSTGLGEIYLYTVEAKPGTKNAEGQPFSPTDLRTVQDWIIKPQLRNVTGVNEVNT 186 V + ++ + D+ +K L + GV +V Sbjct: 124 QQGISVEKSSSSYLMVAGF------VSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 187 IGGFEKQFHVLPDPSKLMAYRLSFRDVMAALAANNANVGAGYI------EKNGEQYLVRT 240 G + + D L Y+L+ DV+ L N + AG + + Sbjct: 178 FGA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 241 PGQVANLEEIGQIVI-GSRGGVPVRIYDVAEVKEGKDLRTGAATLDGHEMVMGTAMLLIG 299 + N EE G++ + + G VR+ DVA V+ G + A ++G L G Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATG 296 Query: 300 ENSRTVAQRVAAKLEQIGKSLPDGVTVRAIYDRTHLVDATIATVEKNLVEGALLVIVILF 359 N+ A+ + AKL ++ P G+ V YD T V +I V K L E +LV ++++ Sbjct: 297 ANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMY 356 Query: 360 LILGNFKAAIATALVIPLAMLFTITGMFENKVSANLMSLG--AIDFGIIIDGAVIIVENC 417 L L N +A + + +P+ +L T + S N +++ + G+++D A+++VEN Sbjct: 357 LFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV 416 Query: 418 LRLLAHEQAKRGRILTREERFETIIAGSREVIKPSLFGTLIIAVVYLPVLTLTGVEGKMF 477 R++ ++ E ++ + ++++ V++P+ G G ++ Sbjct: 417 ERVMMEDKLP---------PKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIY 467 Query: 478 TPMALTVLIALLGASLLSMTFVPAAVALMVTGKVSEKE-------NWFMRLAHRS---YV 527 ++T++ A+ + L+++ PA A ++ +E WF S Y Sbjct: 468 RQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYT 527 Query: 528 PMLDLAIRFRAVVAVLAVVLMVASGYAASRMGGEFIPSLDEGDIAIQAIRIPGTSLTQSL 587 + + ++ +++ R+ F+P D+G G + ++ Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 588 EMQMALEKRLLKI--PEVKETFARTGTAEVATDPMPPSISDGYVMLKPRDQWPDPKKPKS 645 ++ + LK V+ F G + + +V LKP ++ + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNG---FSFSGQAQNAGMAFVSLKPWEERNGDENSAE 644 Query: 646 ELVKEIEEASEEVAGSSYELSQPIQLRFNELISGVRSDVG-VKIFGDDLEVLAQVAGQVQ 704 ++ + ++ EL + D + G + L Q Q+ Sbjct: 645 AVIHRAKMELGKIRDGFVIPFNM--PAIVELGTATGFDFELIDQAGLGHDALTQARNQLL 702 Query: 705 TVLQAVPGA-ADVKTEQVAGLPVLTVKLDRKALARLGISVTDVQSLVEIAVGGKSAGLVF 763 + P + V+ + +++D++ LG+S++D+ + A+GG Sbjct: 703 GMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFI 762 Query: 764 EGDRRFDLVVRLPEDRRSDIEAMKSLPIPLPPVDGQAKVQPAVLGTSPLNQMRYAPLSEL 823 + R L V+ R E + L + S +M P S Sbjct: 763 DRGRVKKLYVQADAKFRMLPEDVDKLYVR-----------------SANGEM--VPFSAF 803 Query: 824 AEISVSPGPNQISREDGKRRIVVSANVRGRDLGSFVTDAQSQIAQ-KVKLPAGYWIGWGG 882 G ++ R +G + + G+ DA + + KLPAG W G Sbjct: 804 TTSHWVYGSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWTG 860 Query: 883 QFEQLVSATQRLTIVVPIALLLILLLLFISLGSAADAFLVFSGVPLALTGGIFALVLRGI 942 Q + + +V I+ +++ L L S + V VPL + G + A L Sbjct: 861 MSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQ 920 Query: 943 PLSISAGIGFIALSGVAVLNGLVIITFI-ERLRHEGKTIMEAVHEGALTRLRPVLMTALV 1001 + +G + G++ N ++I+ F + + EGK ++EA RLRP+LMT+L Sbjct: 921 KNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLA 980 Query: 1002 ASLGFVPMAIATGAGAEVQRPLATVVIGGIISSTILTLLVLPALYILFRR 1051 LG +P+AI+ GAG+ Q + V+GG++S+T+L + +P +++ RR Sbjct: 981 FILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030 Score = 75.6 bits (186), Expect = 6e-16 Identities = 77/524 (14%), Positives = 163/524 (31%), Gaps = 48/524 (9%) Query: 5 VLAFSVRQRWLVMIGVLLMAAFGAWNFSRLPIDAVPDITNVQVQINTNAPGYSPLEVEQR 64 + + ++ L+ A F RLP +P+ P + E Q+ Sbjct: 529 SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588 Query: 65 ITFPIETAMG-----GLPNLVNTRSLSRYGLSQ----VTIVFKDGIDIYFARQLVNERVQ 115 + + + ++ S G +Q + K + + Sbjct: 589 VLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIH 648 Query: 116 RVKDMLPT-----GIETAMGPV-STGLGEIYLYTVEAKPGTKNAEGQPFSPTDLRTVQDW 169 R K L I M + G + + + + G + L Sbjct: 649 RAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQH 708 Query: 170 IIKPQLRNVTGVNEVNTIGGFEKQFHVLPDPSKLMAYRLSFRDVMAALAANNANVGAGYI 229 G+ + QF + D K A +S D+ ++ Sbjct: 709 PASLVSVRPNGLEDTA-------QFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDF 761 Query: 230 EKNGEQY--LVRTPGQVA-NLEEIGQIVIGSRGGVPVRIYDVAEVKEGKDLRTGAATLDG 286 G V+ + E++ ++ + S G V G+ L+ Sbjct: 762 IDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWV----YGSPRLE- 816 Query: 287 HEMVMGTAMLLIGENSRTVAQRVAAKLEQIGKSLPDGVTVRAIYDRTHLVDATIATVEKN 346 + + + T + A +E + LP G+ YD T + + + Sbjct: 817 RYNGLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIG----YDWTGMSYQERLSGNQA 872 Query: 347 LVEGAL---LVIVILFLILGNFKAAIATALVIPLAMLFTITGMFENKVSANLMSL-GAID 402 A+ +V + L + ++ ++ LV+PL ++ + ++ + G + Sbjct: 873 PALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLT 932 Query: 403 -FGIIIDGAVIIVENCLRLLAHEQAKRGRILTREERFETIIAGSREVIKPSLFGTLIIAV 461 G+ A++IVE L+ E + E + R ++P L +L + Sbjct: 933 TIGLSAKNAILIVEFAKDLMEKEG---------KGVVEATLMAVRMRLRPILMTSLAFIL 983 Query: 462 VYLPVLTLTGVEGKMFTPMALTVLIALLGASLLSMTFVPAAVAL 505 LP+ G + + V+ ++ A+LL++ FVP + Sbjct: 984 GVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVV 1027 Score = 66.4 bits (162), Expect = 5e-13 Identities = 101/549 (18%), Positives = 207/549 (37%), Gaps = 69/549 (12%) Query: 529 MLDLAIRFRAVVAVLAVVLMVASGYAASRMGGEFIPSLDEGDIAIQAIRIPGTSLTQSLE 588 M + IR VLA++LM+A A ++ P++ +++ A PG Q+++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSA-NYPGAD-AQTVQ 58 Query: 589 MQMA--LEKRLLKIPEVKETFARTGTAEVATDPMPPSISDGYVMLKPR-DQWPDPKKPKS 645 + +E+ + I + + S S G V + DP + Sbjct: 59 DTVTQVIEQNMNGIDNLMYMSST-------------SDSAGSVTITLTFQSGTDPDIAQV 105 Query: 646 ELVKEIEEASE------EVAGSSYELSQPIQLRFNELISGVRSDVGVKIFGDDLEVLAQV 699 ++ +++ A+ + G S E S L +++G SD ++ V Sbjct: 106 QVQNKLQLATPLLPQEVQQQGISVEKSSSSYL----MVAGFVSDNPGT---TQDDISDYV 158 Query: 700 AGQVQTVLQAVPGAADVKTEQVAGLPV-LTVKLDRKALARLGISVTDVQSLVEIA----V 754 A V+ L + G DV Q+ G + + LD L + ++ DV + +++ Sbjct: 159 ASNVKDTLSRLNGVGDV---QLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIA 215 Query: 755 GGKSAGLVFEGDRRFDLVVRLPEDRRSDIEAMKSLPIPLPPVDGQAKVQPAVLGTSPLNQ 814 G+ G ++ + + + R + E + + + DG Sbjct: 216 AGQLGGTPALPGQQLNASIIA-QTRFKNPEEFGKVTLRVNS-DGSV-------------- 259 Query: 815 MRYAPLSELAEISV-SPGPNQISREDGKRRIVVSANVRGRDLGSFVTDAQSQIAQKVK-- 871 L ++A + + N I+R +GK + + G+ D I K+ Sbjct: 260 ---VRLKDVARVELGGENYNVIARINGKPAAGLGIKLAT---GANALDTAKAIKAKLAEL 313 Query: 872 ---LPAGYWIGWGGQFEQLVSATQRLTIVVPI-ALLLILLLLFISLGSAADAFLVFSGVP 927 P G + + V + + A++L+ L++++ L + + VP Sbjct: 314 QPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVP 373 Query: 928 LALTGGIFALVLRGIPLSISAGIGFIALSGVAVLNGLVIITFIERLRHEGKT-IMEAVHE 986 + L G L G ++ G + G+ V + +V++ +ER+ E K EA + Sbjct: 374 VVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEK 433 Query: 987 GALTRLRPVLMTALVASLGFVPMAIATGAGAEVQRPLATVVIGGIISSTILTLLVLPALY 1046 ++ A+V S F+PMA G+ + R + ++ + S ++ L++ PAL Sbjct: 434 SMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALC 493 Query: 1047 ILFRRESSP 1055 + S Sbjct: 494 ATLLKPVSA 502
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.2 bits (94), Expect = 8e-06 Identities = 36/191 (18%), Positives = 75/191 (39%), Gaps = 19/191 (9%) Query: 62 IEILSASQATLNDSIVLNGIIQPNQEMLVQVTPRFPGVVR-EIKKRIGDPVEKGELLAKI 120 +E ++ + + + I +E VT F + ++++ + LAK Sbjct: 262 VEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKN 321 Query: 121 ESNQSLTTYEMRAPISGTVIDRQI-SLGEYASEQKPSF-IVADISTVWVDLSVYRRDLSR 178 E Q + +RAP+S V ++ + G + + IV + T+ V V +D+ Sbjct: 322 EERQQAS--VIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGF 379 Query: 179 VKVGDTVVIDV----GDGGKPIEAKISYVSPVGSSDTQSALV----RAVVQNE------G 224 + VG +I V + K+ ++ D + LV ++ +N Sbjct: 380 INVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKN 439 Query: 225 LRLRTGLFVSA 235 + L +G+ V+A Sbjct: 440 IPLSSGMAVTA 450 Score = 31.0 bits (70), Expect = 0.006 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 62 IEILSASQATLNDSIVLNGIIQPNQEMLVQVTPRFPGVVREIKKRIGDPVEKGELLAKIE 121 I + + + NG + + + P +V+EI + G+ V KG++L K+ Sbjct: 70 IAFILSVLGQVEIVATANGKLTHSGRSKE-IKPIENSIVKEIIVKEGESVRKGDVLLKLT 128 Query: 122 SNQS 125 + + Sbjct: 129 ALGA 132
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.1 bits (67), Expect = 0.038 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 10/132 (7%) Query: 660 KTLPFGQARKLAGEIVAPQLVAGDFVEQKLIGSSATDDHSLDVPQTVAAGERTDDRIPDK 719 G+ G I P+ F+++++ G +A + L + R + K Sbjct: 153 TAEEIGEQAVREGNINGPE-AYMRFLDREMEGLTAAYNVKLFTEAISSLQIRMNTLTAAK 211 Query: 720 GFRRGGKA----ATRKATATRRANIAAGKKE---AAKLEAAPPSPRVAKTAVGKGMTDTE 772 A A A R+A A ++ AA A P + V TA G+G+ + Sbjct: 212 ASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGL--IQ 269 Query: 773 AAELLASLSEDL 784 A+ ASL++ + Sbjct: 270 VAQGAASLAQAI 281
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 46.2 bits (109), Expect = 5e-07 Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 30/269 (11%) Query: 350 ANQINAPTTVAPQAGI--STGLLGGFSNSVFDRLEASRRFQPYGVNAAMAAMPSKAVALA 407 + + TT + L +N+V +A + Q +N A + Sbjct: 1231 PHNVEPATTSSNDRSTVALCDLTSTNTNAVLS--DARAKAQFVALNVGKAVSQHISQLEM 1288 Query: 408 DPADRWSVFGAASYAGGNRDRQFYAAGYDYGAAGGYLGLEYQFNSNWRVGGVFGYSQPDV 467 + +++V+ + + N Y + + LG + ++N ++GGVF Y + Sbjct: 1289 NNEGQYNVWVSNTSMNKNYSSSQYRR-FSSKSTQTQLGWDQTISNNVQLGGVFTYVRNSN 1347 Query: 468 KLAVQDARNRIDAFQFAGYGSY-TDAHWFADGLVAYG--RQDFALERRGIIDVIRANTSA 524 ++N + Q Y Y D HW+ + YG + A Sbjct: 1348 NFDKATSKNTL--AQVNFYSKYYADNHWYLGIDLGYGKFQSKLQTNHNAKFARHTAQFGL 1405 Query: 525 DVFTVAGRGGYLFDAGRLRVGPIAGLNYTNATIRAYTETGDILLTMLVDRQTLNTL---T 581 G F+ G + PI G+ Y+ Y D L R +N + T Sbjct: 1406 TA-------GKAFNLGNFGITPIVGVRYS------YLSNADFALDQ--ARIKVNPISVKT 1450 Query: 582 GDAGVQIRYPLQIGNGVYTPFVNLTAAHD 610 A V + Y +G TP L+A +D Sbjct: 1451 AFAQVDLSYTYHLGEFSVTPI--LSARYD 1477
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 2e-15 Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 7/156 (4%) Query: 916 PRKTILITDDDPAQRNLLQELLAPIGFIVLSAPDGYTCISLAEHCQPDLFLLDISMAGID 975 TIL+ DDD A R +L + L+ G+ V + T DL + D+ M + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 976 GWTVAETLRTNGHHYARILMVSASAIEAHGAPLAQPYHDGYLMKPVDIPRLLEQIGQLLK 1035 + + ++ ++M + + + +D YL KP D+ L+ IG+ L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYD-YLPKPFDLTELIGIIGRALA 120 Query: 1036 LEWI----HKGEAQETLDFTGEFQSPPMQHVEELIE 1067 + ++Q+ + G +S MQ + ++ Sbjct: 121 EPKRRPSKLEDDSQDGMPLVG--RSAAMQEIYRVLA 154
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 1e-21 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 4/141 (2%) Query: 8 RDIVLVVDDSPETLRMLTDALDGAGMTVMVALDGAAAMRIVEQITPDIILLDAMMPGLDG 67 +LV DD +L AL AG V + + A R + D+++ D +MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 68 FETCRRLK-RNPGVSDVPVIFMTGLTESEHIVRGLEAGGVDYVTKPIVIAEMLARIRVHL 126 F+ R+K P D+PV+ M+ ++ E G DY+ KP + E++ I L Sbjct: 63 FDLLPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 127 GNARLSQSARAALDVSGRFLL 147 + S G L+ Sbjct: 120 AEPKRRPSKLEDDSQDGMPLV 140
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.0 bits (62), Expect = 0.035 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 45 DSFDRVSDVASDVIG-AGRAAMHDVSERVSDRFADVSDRVGHAVHAVRDTGAAALDQASD 103 D F + + S+ A R A+ SE + ++F + V A++DQ ++ Sbjct: 111 DFFTSLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINN 170 Query: 104 LGRQIPD 110 +QI Sbjct: 171 YAKQIAS 177
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 30.0 bits (67), Expect = 0.031 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 10/81 (12%) Query: 499 DAFSALRIGAYNNFVRMRITEDDI--EF-------FVVGLDAVPSRGDWKENPKHGAHTA 549 DA S +R+G Y +FV R+ + D+ EF G P+ +ENP +G H Sbjct: 56 DAIS-MRMGYYGDFVFDRVLKTDVNKEFQMGDKPTSTTGNATAPTTLTARENPAYGRHMQ 114 Query: 550 DEPRFIPATPLTPHLVESFSL 570 D F A + ++ + F + Sbjct: 115 DAEMFTNAACMALNIWDRFDV 135
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.4 bits (107), Expect = 5e-07 Identities = 51/309 (16%), Positives = 94/309 (30%), Gaps = 24/309 (7%) Query: 108 NDAAKANAAPKPDSDGNTKDAKSTDSKSTDSKDSSDTAAATDQSQTAAPATTATTTPVVA 167 N + ++ T + D S S + APAT + TT VA Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA 1041 Query: 168 ---PVTVATVTVDTTAADASAGSAGTVADAA------TTADGPLAIATAAALKAQAAVAD 218 TV + A + VA A T +A + + + Q Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 219 LAATAQPTGAAATDAAETATATGIIAIDPKLAALAAQPNTGKVGNKAATQSDPAATINGE 278 AT + A + +T + + +++ Q T + + A ++DP I Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTS---QVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 279 TQP--TASATDAPATPTLPQAGATHAQAAQSDQTKTNEAAAAGVDQANAQPASATATHQK 336 T + T+ PA T ++ + + A QP + + K Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK 1218 Query: 337 HPTEVQTQPLPDANTLQPVPTTQPLQASTTTQQTAAAPQLTAALATNAPVAMQDL-AVTI 395 +++ VP +++ ++ A L +TN + D A Sbjct: 1219 PKNR-------HRRSVRSVPHNVEPATTSSNDRSTVA--LCDLTSTNTNAVLSDARAKAQ 1269 Query: 396 AARANGGAS 404 N G + Sbjct: 1270 FVALNVGKA 1278
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 27.2 bits (60), Expect = 0.028 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 20/94 (21%) Query: 23 LEVPRDRLKAAGAQVDIVSPEQGEIKGWEGKDWGRPVKVDKALSAV-------------- 68 + V DR + + + GW G W P++ + ++ Sbjct: 64 VSVHPDRWQFLVLEARDGADPAPADDGWSGYRW-LPLRAGRVATSGSIAGGKLNLAFAQG 122 Query: 69 ----KADDYDAIVLPGGQINPDLLRV-NADALKL 97 D+ D ++ PGG++ P L + A + Sbjct: 123 EAWTPGDNPDVLIFPGGEMTPFRLTLGEAPGIAF 156
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 709 bits (1832), Expect = 0.0 Identities = 233/1040 (22%), Positives = 442/1040 (42%), Gaps = 44/1040 (4%) Query: 5 LVEFSLAHRLLVVLATLLLIGSGVYAVRGLPIDAFPDVSPVQVKIIMKAPGMTPEEVESR 64 + F + + + ++L+ +G A+ LP+ +P ++P V + PG + V+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTMPLELEMLGIPNKTILRSTT-KYGLADVTIDFSDGVDIYWARNQVAERLASAMKDMPD 123 VT +E M GI N + ST+ G +T+ F G D A+ QV +L A +P Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GLTGGLAPITTPLGEMFM---FTIEGGDLTLAERRTLLDWTIRPALRTLPGVADVNSLGG 180 + + M F + T + + ++ L L GV DV G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 YVRSFEIVPDNLAMASRGISIDVLEKAIKANNRNGGAGRLSAGEEV------LLVRVDGQ 234 + I D + ++ + +K N AG+L + + + Sbjct: 181 Q-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 235 IRTLDDLRNIVL-ASRDGGMVRVRDVAQVRIGSITRSGAVTRDGQGEAVQGLVLGLRGAN 293 + ++ + L + DG +VR++DVA+V +G + +G+ A + GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGAN 298 Query: 294 ARDVVEGVRAKFKELEPTLPKGVTLKVFYDRGDLVGRAIGTVSKSLIEATVLVIVLLILF 353 A D + ++AK EL+P P+G+ + YD V +I V K+L EA +LV +++ LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 354 LGDWRAALVVALTLPLSALATFVLMRWAGMSANLMSLGGLAVAIGMLIDAAVVVVENIIS 413 L + RA L+ + +P+ L TF ++ G S N +++ G+ +AIG+L+D A+VVVEN+ Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 414 HLAHDRHAARVPLLHRIYQALREVVVPVTSGIVIIVIVFLPLLTLQGLEGKLFIPVALAI 473 + D ++P +++ ++ + +++ VF+P+ G G ++ ++ I Sbjct: 419 VMMED----KLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 474 VFALGSSLLLALTVIPVLASLLLRTSGHQD--------TWLVR---KIGAAYTPVLRFAL 522 V A+ S+L+AL + P L + LL+ + W YT + L Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 523 RREKTVLAVSVLALVATGFAYGQIGKIFMPTMEEGTPIVSVEKLPSISLEESVNLDLKIQ 582 L + L + + ++ F+P ++G + ++ + E + + ++ Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 583 KAVMAAV-PEVQSIVARVGSDEIGLDPMGLNQTDTYVILKPPSEWRKPDDKEWLMGEIRK 641 + V+S+ G N +V LKP E D+ I + Sbjct: 595 DYYLKNEKANVESVFTVNG---FSFSGQAQNAGMAFVSLKPWEER--NGDENSAEAVIHR 649 Query: 642 ALGEFPGIGFSFTQPIEM-RVQEMIIGARGDV-VAKIFGTDIATLNSLAEQITATLKTLK 699 A E I F P M + E+ D + G L Q+ Sbjct: 650 AKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHP 709 Query: 700 GA-EDVRTTLNKGFEYYSVKIDRLQAGRLGLDVDQLTAALRTQIDGEPAGIVVEEGRRTP 758 + VR + + +++D+ +A LG+ + + + T + G ++ GR Sbjct: 710 ASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKK 769 Query: 759 ISIRGPDSLRESPARLAGLSLVLADGKSVPLTNVAHLERIDGPVKIDRENGRRLALVMSN 818 + ++ R P + L + A+G+ VP + + G +++R NG Sbjct: 770 LYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLP----SME 825 Query: 819 VSGRDLVGFVDEAKRAVAERV--KLPEGYSIVWGGQFENQQRAAARLGIVVPIALALVFL 876 + G G A+ E + KLP G W G ++ + + +V I+ +VFL Sbjct: 826 IQGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFL 885 Query: 877 LLFTTFVSLRQSLLVLINIPFALVGGVFSLLISGEYLSVPASVGFIALLGIAVLNGLVLV 936 L + S + V++ +P +VG + + + + V VG + +G++ N +++V Sbjct: 886 CLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIV 945 Query: 937 TYFNTL-RNQGLPPDEIVMLGSQRRLRPILLTASITAFGLVPLLYATGPGADVQRPLAVV 995 + L +G E ++ + RLRPIL+T+ G++PL + G G+ Q + + Sbjct: 946 EFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIG 1005 Query: 996 VIGGLVSSTLLTLVILPVLY 1015 V+GG+VS+TLL + +PV + Sbjct: 1006 VMGGMVSATLLAIFFVPVFF 1025 Score = 99.1 bits (247), Expect = 4e-23 Identities = 85/520 (16%), Positives = 161/520 (30%), Gaps = 43/520 (8%) Query: 4 RLVEFSLAHRLLVVLATLLLIGSGVYAVRGLPIDAFPDVSPVQVKIIMKAPGMTPEEVES 63 V L +L L++ V LP P+ +++ P +E Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 64 RVTMPLELEMLGIPNKTILRSTTKYGL---------ADVTIDFSDGVDIYWARNQVAERL 114 +V + L + T G + + AE + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKP-WEERNGDENSAEAV 646 Query: 115 ASAMKDMPDGLTGGLAPITTPLGEMFMFTIEGGDLTLAERR-----TLLDWT---IRPAL 166 K + G + + T G D L ++ L + A Sbjct: 647 IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706 Query: 167 RTLPGVADVNSLGGYVRS-FEIVPDNLAMASRGISIDVLEKAIKANNRNGGAGRLSAGEE 225 + + V G + F++ D + G+S+ + + I Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 226 V--LLVRVDGQIR-TLDDLRNIVLASRDGGMVRVRDVAQVRIG----SITR-SGAVTRDG 277 V L V+ D + R +D+ + + S +G MV + R +G + + Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEI 826 Query: 278 QGEAVQGLVLGLRGANARDVVEGVRAKFKELEPTLPKGVTLKVFYDRGDLVGRAIGTVSK 337 QGEA G G A + L LP G+ + + Sbjct: 827 QGEAAPGTSSG-----------DAMALMENLASKLPAGIGYD-WTGMSYQERLSGNQAPA 874 Query: 338 SLIEATVLVIVLLILFLGDWRAALVVALTLPLSALATFVLMRWAGMSANLMSLGGLAVAI 397 + + V+V + L W + V L +PL + + ++ + GL I Sbjct: 875 LVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTI 934 Query: 398 GMLIDAAVVVVENIISHLAHDRHAARVPLLHRIYQALREVVVPVTSGIVIIVIVFLPLLT 457 G+ A+++VE + + L + LR P+ + ++ LPL Sbjct: 935 GLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLR----PILMTSLAFILGVLPLAI 990 Query: 458 LQGLEGKLFIPVALAIVFALGSSLLLALTVIPVLASLLLR 497 G V + ++ + S+ LLA+ +PV ++ R Sbjct: 991 SNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>PF07520#Virulence protein SrfB Length = 1041 Score = 30.3 bits (68), Expect = 0.026 Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 530 LSTTVADARFMKPLDVDLVLKLANEHEILITIEE 563 + TVA + P++VDLVL + N I IE Sbjct: 264 FANTVAPRDAVAPVEVDLVLDIGNSRTCGILIER 297
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 36.5 bits (84), Expect = 1e-04 Identities = 18/58 (31%), Positives = 24/58 (41%) Query: 28 TPPPPNPFPKPIEPEKPKPKPKSDPKPPAAEKDKAKKPAADKAGAAKPGGAPTAEDAA 85 P PP P IE KPKPKPK P + + KP + + AP ++ Sbjct: 83 IPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSS 140 Score = 32.3 bits (73), Expect = 0.003 Identities = 17/61 (27%), Positives = 23/61 (37%) Query: 28 TPPPPNPFPKPIEPEKPKPKPKSDPKPPAAEKDKAKKPAADKAGAAKPGGAPTAEDAANL 87 P P P P+ EKPKPKPK PKP + + ++ A P + Sbjct: 81 EPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSS 140 Query: 88 D 88 Sbjct: 141 T 141 Score = 30.3 bits (68), Expect = 0.009 Identities = 16/76 (21%), Positives = 20/76 (26%) Query: 6 PTSILAAALMLLATSASAQLSLTPPPPNPFPKPIEPEKPKPKPKSDPKPPAAEKDKAKKP 65 P S+ A L + Q P PE PK P KP K K K Sbjct: 49 PISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPV 108 Query: 66 AADKAGAAKPGGAPTA 81 + + Sbjct: 109 KKVEQPKRDVKPVESR 124 Score = 30.3 bits (68), Expect = 0.011 Identities = 15/71 (21%), Positives = 21/71 (29%) Query: 28 TPPPPNPFPKPIEPEKPKPKPKSDPKPPAAEKDKAKKPAADKAGAAKPGGAPTAEDAANL 87 P KP KPKPKP + P + + A P ++ A Sbjct: 87 PKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAAT 146 Query: 88 DDPNVDLVYGA 98 P + G Sbjct: 147 SKPVTSVASGP 157
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 29.6 bits (66), Expect = 0.024 Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 10/155 (6%) Query: 28 SSRHPTAGLVPEAPYHVVWLATDACTA-----RCQHCSSNSAKQSPDELTTSEAMAMIDD 82 ++R + R + + + +M I+ Sbjct: 171 TARSIKLNPTDTRSIRQRISDNYSNLGSNFSDRADEANRKMFEHNAKLDRWGNSMEFING 230 Query: 83 LAAAGVVDLGISGGESLLRGDILDVLAHAKKRGLAVGIATNGAKLTPHRAAALAGLGLDR 142 +AA G ++ IS GE+L GDIL + + N A L A+ G Sbjct: 231 VAA-GALNPFISAGEALGIGDILY----GTRYAIDKAAMRNIAPLPAEGKFAVIGGLGSV 285 Query: 143 LQVSLDGFAEQHDELRRWPGLFERALATIATAQAA 177 + ++ P E A A AA Sbjct: 286 AGFEKNTREAVDRWIQENPNAAETVEAVFNVAAAA 320
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 4e-22 Identities = 30/117 (25%), Positives = 57/117 (48%) Query: 3 KILLAEDDNDMRRFLVKALENAGFQVSSFDNGMSAYQRLREEPFEMLLTDIVMPEMDGIE 62 IL+A+DD +R L +AL AG+ V N + ++ + ++++TD+VMP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 LARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLSKPVHLRELVSEVNKMLAA 119 L R + PD+ ++ ++ + L KP L EL+ + + LA Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.7 bits (170), Expect = 6e-17 Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 10/170 (5%) Query: 7 RTNPERSSTTRSGLIAAARQAFVARGYAGTSTPDLVEAAGVTRGALYHHFADKQALFRAV 66 R + + TR ++ A + F +G + TS ++ +AAGVTRGA+Y HF DK LF + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 67 VE--AESAAVAAEIEAVPMDGSPVAALIAGGEAYLTAMAVQGRTRLLLI-------EAPA 117 E + G P++ L L + + R RLL+ Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 118 VLGRADVDAIDVRHGVRTLREGLQAAIEAGLIKP-VPIEATAQLIGAAYD 166 + + + L+ IEA ++ + A ++ Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYIS 172
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.0 bits (246), Expect = 7e-27 Identities = 68/263 (25%), Positives = 108/263 (41%), Gaps = 23/263 (8%) Query: 25 VNELDFSGQQMLIVGGSSGIGNGIAQAFRTRGAKVCVTGTRAGPGDYSADDGSDFDGLSY 84 +N G+ I G + GIG +A+ ++GA + P S + Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHI--AAVDYNPEKLEKVVSSLKAEARH 58 Query: 85 AQ---LDVSQPQAIEA----FAPPIDRLDVLVLAQGAVIYRRG---EFAMDGFRHVVEVN 134 A+ DV AI+ + +D+LV G + R G + + + VN Sbjct: 59 AEAFPADVRDSAAIDEITARIEREMGPIDILVNVAG--VLRPGLIHSLSDEEWEATFSVN 116 Query: 135 LMSLMACAGKFHPLLKAS-GGALIIVSSTAAFHATKGNPAYNASKTGAMGLTRTLAQAWA 193 + + + G+++ V S A AY +SK A+ T+ L A Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 194 EDGIRVNGIAPGLVDTKMTRVTTAD----PKRLAGAIE----GIPMKRLGTPQDMAGAAL 245 E IR N ++PG +T M AD + + G++E GIP+K+L P D+A A L Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 246 FLASPLSSYVLGQTLVVDGGLIL 268 FL S + ++ L VDGG L Sbjct: 237 FLVSGQAGHITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 102 bits (254), Expect = 5e-28 Identities = 67/255 (26%), Positives = 112/255 (43%), Gaps = 10/255 (3%) Query: 8 SRSVKGLRVLVTGAASGMGRATAHVFADEGARVAVTDVTLAGAQPVADAIAARGLEAKAF 67 ++ ++G +TGAA G+G A A A +GA +A D + V ++ A A+AF Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 68 ALDVGDAAAIKTGVDAIAQDFGGLDIVINNAGISVNLAIDDPGYDAAWDRALAVMLSAHP 127 DV D+AAI I ++ G +DI++N AG+ + + D W+ +V + Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 128 RVIRAALPYLRKSNSPRIVNIASTEALGATAGHSAYSAAKAGVTGLTRSLAVELGPEGIT 187 R+ Y+ S IV + S A +AY+++KA T+ L +EL I Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 188 VNCICPGPITTAMTDRI--SDDHKQKYARRRTALHRYG-------APEEVAHMTLSLCLP 238 N + PG T M + ++ ++ + + G P ++A L L Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 239 AASFLTGVVIPVDGG 253 A +T + VDGG Sbjct: 242 QAGHITMHNLCVDGG 256
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 28.3 bits (63), Expect = 0.019 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Query: 152 PYSRSQISDLLRRTWFTPVGWS----EALFMPPLEQ 183 PY+R +S L+ R F + S +ALFM L++ Sbjct: 119 PYARELVSSLVNRGTFPALNLSPVNFDALFMDYLQR 154
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.034 Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 12/116 (10%) Query: 132 VQQQPYQPREQPRAEQPQFAPR---------EQPQPREHRPQPQFTPRAEQPQPSVEAVD 182 V Q +EQ QPQ P ++PQ + + P E + V Sbjct: 1125 VTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVT 1184 Query: 183 RLPSFITGPQPQISPAAFEGAGGAERFPPRRRRRPHVPRGEGAAAAAPVPAEDATP 238 + TG +P E A P + P+ + VP Sbjct: 1185 ESTTVNTGNSVVENP---ENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 579 bits (1494), Expect = 0.0 Identities = 171/566 (30%), Positives = 288/566 (50%), Gaps = 4/566 (0%) Query: 184 TGAILSDGIALGHVVLH-EPRVVITNYIAEDLPKEIKRLDAALAKLRADLDRLLERGDVA 242 TG S G+A+ +H EP V I D+ EI++L AAL K + +L + ++ + + Sbjct: 6 TGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEAS 65 Query: 243 DGGEHREVLEAYRMFANDHGWSHRLHEAVAT-GLTAEAAVERVQSDTRARMLRSTDPYLR 301 G + E+ A+ + +D + + + AE A++ V + + Y++ Sbjct: 66 MGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEYMK 125 Query: 302 DRLHDLEDLGHRLMRQLVGQNHAPSREQLPDNAILIARSMGPAALLDYDRTRLRGLVLEE 361 +R D+ D+ R++ L+G S + + ++IA + P+ ++ ++G + Sbjct: 126 ERAADIRDVSKRVLGHLIGV-ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDI 184 Query: 362 GTANSHVSIVARALGIAAVGEVPNAPGIADPGDAIIVDATSGSIYVRPSAEVEAAYGERV 421 G SH +I++R+L I AV GD +IVD G + V P+ E AY E+ Sbjct: 185 GGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKR 244 Query: 422 RFRARRQAQYSALRDLACVTKDGQPIDLMINAGLAIDLPHIDDTGSSGIGLFRTELQFMI 481 +++ +++ L TKDG ++L N G D+ + G GIGL+RTE +M Sbjct: 245 AAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMD 304 Query: 482 GQSLPRSSDQLALYRTVLDAAGSKPVTFRTLDIGGDKALPYMETVVEENPALGWRAIRLG 541 LP +Q Y+ V+ KPV RTLDIGGDK L Y++ E NP LG+RAIRL Sbjct: 305 RDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAIRLC 364 Query: 542 LDRPGLLRSQIRALLRAGGGRSLRIMFPMISEVAEFDAAKAIVERELTYLRQHGHTLPER 601 L++ + R+Q+RALLRA +L++MFPMI+ + E AKAI++ E L G + + Sbjct: 365 LEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDS 424 Query: 602 VDVGTMVEVPALLYQLDELLKKVDFISVGSNDLFQFLYAVDRGNSKVSDRFDTLSTPILR 661 ++VG MVE+P+ + K+VDF S+G+NDL Q+ A DR N +VS + ILR Sbjct: 425 IEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAILR 484 Query: 662 ALRHIVRKAKAANRSVSLCGEMASQPLSALALIAIGYRALSVSAVSHGPIKAMILEVDAA 721 + +++ A + + V +CGEMA ++ L+ +G S+SA S P ++ +L++ Sbjct: 485 LVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKE 544 Query: 722 KAEAAILPLLDAPAGSVSIRHKLAEF 747 + + L + + + Sbjct: 545 ELKPFAQKALMLDTAE-EVEQLVKKT 569
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 29.8 bits (67), Expect = 0.017 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 109 ASARITDIDGSEIIKRFGDRKEVAVIAGFQGINP---ETGRITTL-GRGGSDTSAVAIAA 164 S +E IK+ +R + + +G G+ P E G I + D + +A Sbjct: 166 PSPDPKGHVEAETIKKLVERGVIVIASGGGGV-PVILEDGEIKGVEAVIDKDLAGEKLAE 224 Query: 165 ALKADRCDIYTDVDGVYTTDPRVVPKAKRLDKVAFEEMLELASQG 209 + AD I TDV+G K + L +V EE+ + +G Sbjct: 225 EVNADIFMILTDVNGAALYYGT--EKEQWLREVKVEELRKYYEEG 267
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.009 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 18/130 (13%) Query: 114 TTIQAPVAGLVSS-STAVIGAPASAKGDALFTIIARGEFDLV-GQVPTRNLAQLATNQSA 171 + I+APV+ V G + + L I+ + V V +++ + Q+A Sbjct: 328 SVIRAPVSVKVQQLKVHTEGGVVTT-AETLMVIVPEDDTLEVTALVQNKDIGFINVGQNA 386 Query: 172 AVKIVGVPD----EITGRVRRVSATVEPNSQLGNVFVGISSTKRLLSNASGR-------- 219 +K+ P + G+V+ ++ + +LG VF I S + + + Sbjct: 387 IIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGM 446 Query: 220 ---AMIKTGE 226 A IKTG Sbjct: 447 AVTAEIKTGM 456
>PF07132#Harpin protein (HrpN) Length = 356 Score = 32.0 bits (72), Expect = 0.008 Identities = 24/64 (37%), Positives = 28/64 (43%) Query: 564 MGKGLFGALGGGGAAGSPGADNPLGGALGESIGRLIQQGLQSGAAAPSRGAQPAQPPAQQ 623 MG GL G LGG G++ LGG LG +G + GL S GA A A Sbjct: 65 MGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGLGGALGAGMNAMN 124 Query: 624 PGAA 627 P A Sbjct: 125 PSAM 128
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 635 bits (1639), Expect = 0.0 Identities = 257/1042 (24%), Positives = 483/1042 (46%), Gaps = 58/1042 (5%) Query: 5 VSSWSIRHPLPSIVFSIILLALGWISFTKLAVTRLPSADIPVISVAVAQFGAAPAELEAQ 64 ++++ IR P+ + V +IIL+ G ++ +L V + P+ P +SV+ GA ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTKTIEDGVSGVEGVRHIAS-SVTDGLSVTTIQFALETNTDRALNDVKDAITRVRSNLPQ 123 VT+ IE ++G++ + +++S S + G T+ F T+ D A V++ + LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 NVTEPLIQRVDVIGLPIVTYAAISPGK--TPEQLSWFVDDVVKRALQGVRGVAQVERIGG 181 V + I ++ +S T + +S +V VK L + GV V+ G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 182 VEREILVSLDPDRLKAAGLTALDVSRRLRGTNVDLAGGRAEIGKN------DQAIRTLAG 235 + + + LD D L LT +DV +L+ N +A G+ + +I Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 236 AKTLNDLAGTMISLS-SGGEIRLDDLGTVTDTIADRRTFARVNGEPVVALGIKRSKGASD 294 K + + ++ G +RL D+ V + AR+NG+P LGIK + GA+ Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 295 VVVASAVQKRIDALKAAHPDVDLKLI---DTSVDYTKGNYEAAISTLFEGAILAVIVVFL 351 + A A++ ++ L+ P +K++ DT+ + + + + TLFE +L +V++L Sbjct: 300 LDTAKAIKAKLAELQPFFPQ-GMKVLYPYDTTP-FVQLSIHEVVKTLFEAIMLVFLVMYL 357 Query: 352 FLRDIRATVIAAISLPLSIFPAFWAMDMLGFSLNLVSFLAITLSTGILVDDAIVEIENIV 411 FL+++RAT+I I++P+ + F + G+S+N ++ + L+ G+LVDDAIV +EN+ Sbjct: 358 FLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVE 417 Query: 412 RHMRMGKSPYQAAI-EAADEIGLAVIAISLTIIAIFAPASFMSGIAGQFFKQFGITVSVQ 470 R M K P + A ++ +I A++ I++ + A+F P +F G G ++QF IT+ Sbjct: 418 RVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSA 477 Query: 471 VFFSLLAARFVTPVLAAYFLKHVPHEEKPP------------GRILRGYTRMVTWSVKHY 518 + S+L A +TP L A LK V E + YT V + Sbjct: 478 MALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGST 537 Query: 519 YLTVLIGLGVFAASIWSIVLLPQGFLPAQDTSRSVMAMELPPGTQIGTTEKITETV--VT 576 +LI + A + + LP FLP +D + ++LP G T+K+ + V Sbjct: 538 GRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYY 597 Query: 577 MLRKRPEVRSVFVDGGRVPPGIHEVRRASLIINY----TSKGDRKITQRELELAISKDLD 632 + ++ V SVF G G + + A + + + + + +L Sbjct: 598 LKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELG 655 Query: 633 QVPDIRYWFLDENGLRAISL-VVTGADSNIVNNVAQ----------ELAAQMKRIPI-LS 680 ++ D + + N + L TG D +++ +L + P L Sbjct: 656 KIRDG--FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLV 713 Query: 681 NVISETSLDRPELRILPRADLAARLGVSTESLSETIRVATIGDVGPALAKFDAGDRLVPI 740 +V D + ++ + A LGVS +++TI A G + F R+ + Sbjct: 714 SVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTY---VNDFIDRGRVKKL 770 Query: 741 RVQLEDGARGDLSVLEQLQVPIYGGRGSVPLSVVADVKFDQGPTSINRYDRERQATVAAD 800 VQ + R +++L V G VP S + G + RY+ + + Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGE-MVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGE 829 Query: 801 LVGNAALGDAQKRINDLPVMKSLPKGVRVSPSGDAESLNELSDGFATAISAGLMMVYAVL 860 + GDA + +L LP G+ +G + + ++ ++V+ L Sbjct: 830 AAPGTSSGDAMALMENL--ASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCL 887 Query: 861 VLLFGTFLQPITILFSLPLSIGGAIGALLITGKQLTTPVWIGILMLMGIVTKNAIMLVEF 920 L+ ++ P++++ +PL I G + A + ++ +G+L +G+ KNAI++VEF Sbjct: 888 AALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEF 947 Query: 921 ALE-SIRDGKNREEAMIDAGQKRARPIVMTTIAMVAGMIPSALAFGAGGEFRSPMALAVI 979 A + ++GK EA + A + R RPI+MT++A + G++P A++ GAG ++ + + V+ Sbjct: 948 AKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVM 1007 Query: 980 GGLIFSTVLSLIFVPAMFMMMD 1001 GG++ +T+L++ FVP F+++ Sbjct: 1008 GGMVSATLLAIFFVPVFFVVIR 1029
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.6 bits (64), Expect = 0.031 Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 78 VRITGFVVPRKEAVVIAD-SDGKVTDVLVREGDVVTDNQELVRI 120 G + + I + V +++V+EG+ V L+++ Sbjct: 84 ATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKL 127
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 91.5 bits (227), Expect = 3e-24 Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 12/114 (10%) Query: 99 EITFDYNSANISRKAEPAVDALGKALSNPDLKGSTFVVAGHTDSIGGDAYNQELSERRAD 158 ++ F++N A + + + A+D L LSN D K + VV G+TD IG DAYNQ LSERRA Sbjct: 220 DVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQ 279 Query: 159 TIKRVLVEKYGIAGSDLVTVGYGENKP-----------KDAVRPADPSNRRVQV 201 ++ L+ K GI + G GE+ P + A+ +RRV++ Sbjct: 280 SVVDYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEI 332
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.8 bits (77), Expect = 0.001 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Query: 271 TPPEPAAKSNPAPVETKPAVAVSPPVAKPSATVTKSAPAAAAEPDKPAELAKQIELPKPI 330 P +P + + AP + +P AV P P V + P P+ P E IE PKP Sbjct: 45 APAQPISVTMVAPADLEPPQAVQP----PPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 100 Query: 331 DVPKELAKE 339 PK + Sbjct: 101 PKPKPKPVK 109 Score = 32.6 bits (74), Expect = 0.003 Identities = 20/109 (18%), Positives = 26/109 (23%), Gaps = 6/109 (5%) Query: 251 VPSSKTAAADTSKANPIVDRTPPEPAAKSNP----APVETKPAVAVSPPVAKPSATVTKS 306 P S T A P + PPEP + P P K A V K Sbjct: 48 QPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP 107 Query: 307 APAAAAEPD--KPAELAKQIELPKPIDVPKELAKELGSITAEPVSGDAG 353 KP E + + + S +G Sbjct: 108 VKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASG 156
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.2 bits (96), Expect = 2e-05 Identities = 29/188 (15%), Positives = 75/188 (39%), Gaps = 13/188 (6%) Query: 393 ARERDDRARAERDAAAKAAELAKQQAAQKKVEEAAVRKREDDERRAQKAEADAKAKADEA 452 RE A++ A + E+A+ + K+ + ++ E + KAK E Sbjct: 1065 NREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE-------TATVEKEEKAKV-ET 1116 Query: 453 ERKAAEAKRKAEDADRQKTAAEAAALRAESERR---TRLAEDERRKAAEATIQETVCKDQ 509 E+ K ++ + +Q+ +E +AE R T ++ + + E K+ Sbjct: 1117 EKTQEVPKVTSQVSPKQEQ-SETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKET 1175 Query: 510 QAKFDDLNGKSSATSALDDMKTFAKSITCSRLQPMVATAIDRLKLEADKRA-AAMPNSPQ 568 + + +S+ + + + ++ T + QP V + +R+ ++P++ + Sbjct: 1176 SSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVE 1235 Query: 569 LVRSAQSE 576 ++ ++ Sbjct: 1236 PATTSSND 1243
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 88.1 bits (218), Expect = 9e-23 Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 12/126 (9%) Query: 92 AAIAAKRPAIDLEINFDYNSAALTPRAEPQLKSLGDALISSDLKDSIVMLAGHTDAKGGD 151 + K + ++ F++N A L P + L L L + D KD V++ G+TD G D Sbjct: 208 PEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSD 267 Query: 152 DYNQTLSERRAESVKRYLIDRYSIRPDHLVAVGYGKKQ-----------LKDPSDPLGAE 200 YNQ LSERRA+SV YLI + I D + A G G+ + A Sbjct: 268 AYNQGLSERRAQSVVDYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAP 326 Query: 201 NRRVQI 206 +RRV+I Sbjct: 327 DRRVEI 332
>PERTACTIN#Pertactin signature. Length = 922 Score = 58.6 bits (141), Expect = 5e-11 Identities = 73/276 (26%), Positives = 106/276 (38%), Gaps = 41/276 (14%) Query: 138 AGVQVGADTSILNYNGWNMHLGSTVGYLGAKSRDKSSAGALNPLGGTFEDTLQVPFAGVY 197 AG ++GAD ++ G HLG GY D+ G GG D++ V Y Sbjct: 685 AGFELGADHAVAVAGG-RWHLGGLAGYTRG---DRGFTGD----GGGHTDSVHVGGYATY 736 Query: 198 VAITKGGFFADGQVRLDYYQNSLSDPIV-GGIFSQKLDARGLSFTGNVGYNHALENNWFI 256 +A GF+ D +R +N G K G+ + G A + WF+ Sbjct: 737 IA--NSGFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGVSLEAGRRFAHADGWFL 794 Query: 257 EPSAGIVVSKVKVDPLNVTGSLVLPATFTPGVTFPGQLQVDDINSTLGRLSLRGGTSIA- 315 EP A + V +V L +++ + +S LGRL L G I Sbjct: 795 EPQAELAVFRVGGGAYRAANGL--------------RVRDEGGSSVLGRLGLEVGKRIEL 840 Query: 316 SGNMIWQPFAIASVYHEFSGAVTSTFNGDAAFNATGIPSATGTISSTNLGTYGQFGLGVA 375 +G QP+ ASV EF GA T NG A + GT + GLG+A Sbjct: 841 AGGRQVQPYIKASVLQEFDGAGTVRTNGIA-------------HRTELRGTRAELGLGMA 887 Query: 376 GQLVNTGLLGYVRADYRTGDHID-GYSLNGGVRYQF 410 L G Y +Y G + ++ + G RY + Sbjct: 888 AAL-GRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW 922
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 113 bits (283), Expect = 2e-32 Identities = 76/263 (28%), Positives = 120/263 (45%), Gaps = 16/263 (6%) Query: 4 LTGKTAVVTGSTSGIGLAYARAFAKSGANVVLNGMGEPDAIEAARKAIETDFAVKALYS- 62 + GK A +TG+ GIG A AR A GA++ D + + + +A ++ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIA-----AVDYNPEKLEKVVSSLKAEARHAE 60 Query: 63 --PADMLKPAEIAEMIKLGEKTLGSVDILVNNAGIQFVSPVEEFPVDKWDAIIAINLSSA 120 PAD+ A I E+ E+ +G +DILVN AG+ + ++W+A ++N + Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 121 FHGIRAAVPGMKKRGWGRIINTASAHSLVASPFKSAYVAAKHGIAGLTKTVALELATHKI 180 F+ R+ M R G I+ S + V +AY ++K TK + LELA + I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 181 TCNCISPGYVWTPLVEKQIPDTMKARGLTKDQVINDVLLQAQ---PTKQFVTSEQVAALA 237 CN +SPG T + ++ A +QVI L + P K+ +A Sbjct: 181 RCNIVSPGSTETDMQW-----SLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAV 235 Query: 238 VYLCGDDASQITGANLSMDGGWT 260 ++L A IT NL +DGG T Sbjct: 236 LFLVSGQAGHITMHNLCVDGGAT 258
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.014 Identities = 6/34 (17%), Positives = 14/34 (41%) Query: 115 SRWATLAASSLVSLLLAALVWALSSSLDAATVLP 148 SR L A ++ L+ A + ++ ++ Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATAN 87
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.0 bits (67), Expect = 0.003 Identities = 15/35 (42%), Positives = 19/35 (54%) Query: 82 IAAAGFAAIVVAGLLSMITSTTLGFSGEAVREGAL 116 AA + VVA L S++ TTLG G A+ G L Sbjct: 470 KAADAGVSYVVALLFSLLAGTTLGIWGIAIVTGIL 504
>FLAGELLIN#Flagellin signature. Length = 507 Score = 30.4 bits (68), Expect = 0.015 Identities = 34/273 (12%), Positives = 84/273 (30%), Gaps = 9/273 (3%) Query: 156 VAAFNANTTEFEGAIGTVIDTVSSASNNMGETAGSLNRGVAATRERALAVSAASEQASTN 215 V A N T + T +D + + G G + + + Sbjct: 229 VNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 216 METVAAATTELTASAN------EILGSVNRSASIARTAVSASDHARETVGSLSTATERIG 269 +T +++ + N + +A++ + +S + +V + + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 270 TIVQLIEEIASQTNLLALNATIEAARAGEAGRGFSVVAQEVKSLAAQTAKATHDISMSIA 329 N + + I A A+ ++ Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 330 EVQETTRAAVDAISSIGQSIGEVDAIT---GQVAIAVETQTAATSEVARNIEQAFAGIRD 386 + ++ + ++SI ++ +VDA+ G + ++ N+ A + I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 387 ISFNIQSVTVNVAETEQHAGTTLTASGSLAQQA 419 + + ++ A+ Q AGT++ A + Q Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQN 501
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 29.3 bits (65), Expect = 0.002 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%) Query: 1 MK--LKLAVAAAAALGAVALSPGVASAAMPNGLAGAANAAGSQAANVD 46 MK L++ AAAAAL AV +A+ AMP A NA + AN + Sbjct: 1 MKKNLRIVSAAAAALLAV---APIAATAMPVNAATTINADSAINANTN 45
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.3 bits (164), Expect = 8e-16 Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 1/114 (0%) Query: 2 VRVRTEAKREAILETAAEVFRERGLDGASMSEIAKRLGGSKATLYGYFPSKEELFVHVSL 61 + + R+ IL+ A +F ++G+ S+ EIAK G ++ +Y +F K +LF + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI-W 63 Query: 62 RVVAKQIMPALHRMAERADEDPRQVIFDVGRQLIRLVTSPSSVTALRLAVAQRS 115 + I + DP V+ ++ ++ + L + + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKC 117
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 9e-07 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 5/115 (4%) Query: 103 GKVARRMVRNGDLVRKGQALLVLDTNDLELQREQAQAEVRAATTSLA--QAEADEKRVTE 160 V +V+ G+ VRKG LL L E + Q+ + A Q + + + Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 161 LQSKGWAAAATLEKGRAAAEEARSRLTRAQRSV---DLAAHALDYATLEADADGV 212 L + + L + Q S L+ A+ V Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTV 219
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 448 bits (1154), Expect = e-142 Identities = 233/1051 (22%), Positives = 435/1051 (41%), Gaps = 55/1051 (5%) Query: 6 LSAWAVAHPTLILFLILMIGVAGTLSYRNLGRAEDPSYTIKVAVVTAAWPGATAEEMQFQ 65 ++ + + P L +++ +AG L+ L A+ P+ V+A +PGA A+ +Q Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 66 VADRIEKKLQELPSFYKVTTYS-KPGFVAAQMEFRDTTPPGQVPWLFYLVRKKMVDLKPD 124 V IE+ + + + +++ S G V + F+ T P V+ K+ P Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPD---IAQVQVQNKLQLATPL 117 Query: 125 LPDGVIGPNVNDEYGDVDSI-VYMLRSESADY--ATLKRVAEA-ARQRLLKVNNVSKVTI 180 LP V ++ E + V S++ + + + L ++N V V + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 181 YGTQDE-RIFVDFDHVKLANLGIAPQAIFDSLARQNALSLAGMMQTAST------RIPLR 233 +G Q RI++D D L + P + + L QN AG + + Sbjct: 178 FGAQYAMRIWLDAD--LLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235 Query: 234 VTGAFDGVKAVEETPVAAN--GAVIRLGDIATVSRGFIDPPEFLARHRGVPALALGIVMQ 291 F + + + N G+V+RL D+A V G + +AR G PA LGI + Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGG-ENYNVIARINGKPAAGLGIKLA 294 Query: 292 KGANILKLGSDVEAVMTEVDRATPVGLVFERMANQPAVVAEAVDDFMRSFVEALAIVLIV 351 GAN L ++A + E+ P G+ + V ++ + +++ EA+ +V +V Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 352 SFLSLG-WRTGIVVAASVPLVLGVVFSIMLMIGIDLHRISLGALIIALGLLVDDAIIAVE 410 +L L R ++ +VP+VL F+I+ G ++ +++ +++A+GLLVDDAI+ VE Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 411 MMV-VKMEQGFGRAEAAAFAWQSTAFPMLTGTLVTAAGFVPVGFAASGTAEYAGSIFWVV 469 + V ME EA + ++ +V +A F+P+ F T + Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 470 AIALIASWVVAVIFTPYLGFKLLPTLKTTHAGDPGAIYQ------TGIYRRLRSVVSWCV 523 A+ S +VA+I TP L LL + H + G + + V + Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 524 QHRIKVVVATFAMFALSVIGFGKVSKQFFPASDRPELFVQLRLPEGSAIGATIEAAKRAE 583 + ++ + A V+ F ++ F P D+ ++LP G+ T + + Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 584 ALLAGDDDAATWASFIGKGPPRFLLNFNPALPNEAYAEIVVV---ARSGEARERIKAKIE 640 ++ A S +F+ N A + + R+G+ Sbjct: 595 DYY-LKNEKANVESVFTVNG----FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHR 649 Query: 641 HAVADGAIPDARV------RVNRLRYGPPIEFPVQFRVIGADPNTVRGIAYQVRDILRAN 694 + G I D V + L +F + + G + + Q+ + + Sbjct: 650 AKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQ-AGLGHDALTQARNQLLGMAAQH 708 Query: 695 PNAIEP-QLDWNEQMPSIRLVVDQDRARALGLDPQTVAQTLQTLVTGSTVTTVRDRTEKV 753 P ++ + + E +L VDQ++A+ALG+ + QT+ T + G+ V DR Sbjct: 709 PASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVK 768 Query: 754 AVVARAVASQRGDIGAIGDLTVLSRNGVPVPLSQVARIEQGHEEAIQWRRNRDMVITVRT 813 + +A A R + L V S NG VP S + R N + ++ Sbjct: 769 KLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQG 828 Query: 814 DVRDGVQAPDVSAAVWATLGDLRQRLPEGYRIELGGAIEDSGRANGALVAVMPMMLVIML 873 + G + D A + +L +LP G + G + A++ + V++ Sbjct: 829 EAAPGTSSGDAMALM----ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVF 884 Query: 874 TVLMVQLQSFSRLALVLLTAPLGLIGACLGLLVSGKPFGFVALLGLIALAGMIIRNAVIL 933 L +S+S V+L PLG++G L + + ++GL+ G+ +NA+++ Sbjct: 885 LCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILI 944 Query: 934 VDQIEHDVAA-GHPRRVAIIDATVRRARPVVLTSLAAVLAMIPLSRSSFWG-----PMAV 987 V+ + + G A + A R RP+++TSLA +L ++PL+ S+ G + + Sbjct: 945 VEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGI 1004 Query: 988 AIMGGLLVATALTLLFLPALYALWFRRSLDG 1018 +MGG++ AT L + F+P + + RR G Sbjct: 1005 GVMGGMVSATLLAIFFVPVFFVV-IRRCFKG 1034
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.4 bits (123), Expect = 6e-10 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 3/118 (2%) Query: 1 MSRVSVALVDDHPLMIEAVFSLLSRIDSFEVVATGTSAKDVVDIGTLLRPEIMIVDLGLP 60 M+ ++ + DD + + LSR ++V T +A + ++++ D+ +P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAG-YDVRITS-NAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 G-DVYAAIASVASNSCGTKLVAFTASTGVDTAIRALDSGASGYVLKGSSPDELLDAIA 117 + + + + ++ +A TAI+A + GA Y+ K EL+ I Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.004 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 10/85 (11%) Query: 386 NAYYYA-----SGQGQHVSASGSAGQITIVVRDSGSADAPASPRLRKTGLGLPGLHRRVQ 440 N + G + + G +T+ V ++GS + TG GL + R+Q Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK--ESTGTGLQNVRERLQ 323 Query: 441 ---GFRGSLEIAQLSPGTELRATLP 462 G +++++ +P Sbjct: 324 MLYGTEAQIKLSEKQGKVNAMVLIP 348
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 90.8 bits (225), Expect = 6e-20 Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 16/151 (10%) Query: 2800 GTPQPDVLVGGAGDDNIVAFADDDVIAADAGADAISAGDGNDFVTAGAGRDVIFAGAGND 2859 G+ D+ G GDD I +D + D G D +S G+G+D + G G D + AGN+ Sbjct: 733 GSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNN 792 Query: 2860 QVFAGDGAD------------MIYGDAGADRIFGHQGNDLINAGAGDDIVFGGAGNDLIV 2907 + GDG D +++G G D+++G +G DL++ G GDD++ GG GND+ Sbjct: 793 YLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYR 852 Query: 2908 AELSDGNDVYYGDDSEGGSGIDTLDLSAATA 2938 G+ + + G D L L+ Sbjct: 853 YLSGYGHHIID----DDGGKEDKLSLADIDF 879 Score = 82.3 bits (203), Expect = 2e-17 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 7/139 (5%) Query: 976 GTDGDDTIITDFGDDGIWGDAGDDRIESGAGVDLVNGGAGNDIITDSGDTGDFLKGDEGD 1035 G DGDD I + G+D ++GD G+D + G G D + GG GND + ++L G +GD Sbjct: 742 GADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLI-GVAGNNYLNGGDGD 800 Query: 1036 DVIA---NSNGIDILMGGSGKDVVFVGVDDTEVFAGEGDDFVLGGDGVDFLLGNEG---D 1089 D NS ++L GG G D ++ + GEGDD + GG G D G Sbjct: 801 DEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHH 860 Query: 1090 DWMEAGGGFDTTAGDNSEL 1108 + GG D + + + Sbjct: 861 IIDDDGGKEDKLSLADIDF 879 Score = 76.5 bits (188), Expect = 1e-15 Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 14/162 (8%) Query: 970 EHIVVGGTDGDDTIITDFGDDGIWGDAGDDRIESGAGVDLVNGGAGNDIITDSGDTGDFL 1029 E ++ GT D D G GDD IE G D + G GND + G+ D L Sbjct: 720 EELI--GTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTL-SGGNGDDQL 776 Query: 1030 KGDEGDDVIANSNGIDILMGGSGKDVVFV---GVDDTEVFAGEGDDFVLGGDGVDFLLGN 1086 G +G+D + G + L GG G D V + +F G+G+D + G +G D L G Sbjct: 777 YGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGG 836 Query: 1087 EGDDWMEAGGGFDTTAGDNSELFFNSAIKGHDVMFAGSEEHD 1128 EGDD ++ G G D + + GH ++ + D Sbjct: 837 EGDDLLKGGYGNDI--------YRYLSGYGHHIIDDDGGKED 870 Score = 75.0 bits (184), Expect = 4e-15 Identities = 54/212 (25%), Positives = 82/212 (38%), Gaps = 30/212 (14%) Query: 2816 IVAFADDDVIAADAGADAISAGDGNDFVTAGAGRDVIFAGAGNDQVFAGDGADMIYGDAG 2875 ++ D D DG+D + G D ++ GND + G+G D +YG G Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDG 781 Query: 2876 ADRIFGHQGNDLINAGAGDD------------IVFGGAGNDLIVAELSDGNDVYYG---- 2919 D++ G GN+ +N G GDD ++FGG GND + S+G D+ G Sbjct: 782 NDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYG--SEGADLLDGGEGD 839 Query: 2920 DDSEGGSGIDTLDLSAATANVTVNLGSGPLFHGSASGSQTGNDTLWSIENVYTGSGNDTI 2979 D +GG G D + + ++ G S + + GND I Sbjct: 840 DLLKGGYGNDIYRYLSGYGHHIIDDDGGK--EDKLSLADIDFRDVAFKRE-----GNDLI 892 Query: 2980 TASNAVNVISGGTGN-----DTFRFTSTSAAN 3006 NV+S G N + F S +N Sbjct: 893 MYKGEGNVLSIGHKNGITFRNWFEKESGDISN 924 Score = 59.6 bits (144), Expect = 2e-10 Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 12/138 (8%) Query: 1007 VDLVNGGAGNDIITDSGDTGDFLKGDEGDDVIANSNGIDILMGGSGKDVVFVGVDDTEVF 1066 V+ + G D S T D G +GDD+I ++G D L G G D + Sbjct: 719 VEELIGTTRADKFFGSKFT-DIFHGADGDDLIEGNDGNDRLYGDKGND---------TLS 768 Query: 1067 AGEGDDFVLGGDGVDFLLGNEGDDWMEAGGGFDTTAGDNSELFFN--SAIKGHDVMFAGS 1124 G GDD + GGDG D L+G G++++ G G D + L N KG+D ++ Sbjct: 769 GGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSE 828 Query: 1125 EEHDFDAESGDDIMVQGE 1142 D GDD++ G Sbjct: 829 GADLLDGGEGDDLLKGGY 846 Score = 58.4 bits (141), Expect = 5e-10 Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 18/173 (10%) Query: 2859 DQVFAGDGADMIYGDAGADRIFGHQGNDLINAGAGDDIVFGGAGNDLIVAELSDGNDVYY 2918 +++ AD +G D G G+DLI G+D ++G GND + +G+D Y Sbjct: 720 EELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSG--GNGDDQLY 777 Query: 2919 G----DDSEGGSGIDTLDLSAATANVTVNLGSGPLFHGSASGSQTGNDTLWSIENVYTGS 2974 G D G +G + L+ + + L G GND L Y Sbjct: 778 GGDGNDKLIGVAGNNY--LNGGDGDDEFQVQGNSLAKNVLFGG-KGNDKL------YGSE 828 Query: 2975 GNDTITASNAVNVISGGTGNDTFRFTSTSAANGDTILDFEPGDRIDLTAIDAS 3027 G D + +++ GG GND +R+ S G I+D + G L+ D Sbjct: 829 GADLLDGGEGDDLLKGGYGNDIYRYLSGY---GHHIIDDDGGKEDKLSLADID 878 Score = 46.1 bits (109), Expect = 2e-06 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 4/112 (3%) Query: 955 GTAGPDENYIRFSGGEHIVVGGTDGDDTIITDFGDDGIWGDAGDDRIESGAGVD--LVNG 1012 G G DE ++ + V+ G G+D + G D + G GDD ++ G G D Sbjct: 796 GGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLS 855 Query: 1013 GAGNDIITDSGDTGDFLK-GDEG-DDVIANSNGIDILMGGSGKDVVFVGVDD 1062 G G+ II D G D L D DV G D++M +V+ +G + Sbjct: 856 GYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKN 907 Score = 45.0 bits (106), Expect = 5e-06 Identities = 60/243 (24%), Positives = 84/243 (34%), Gaps = 28/243 (11%) Query: 1046 ILMGGSGKDVVFVGVDDTEVFAGEGDDFVLGGDGVDFLLGNEGDDWMEAGGGFDTTAGDN 1105 G G D VF+ ++AG+G D V L +G EAG T Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGG 672 Query: 1106 SELFFNSAIKGHDVMFAGSEE-----HDFDAESGDDIMVQGESVMRNEGMFGFDWA-IFK 1159 +K +V E + + +++ E + G A F Sbjct: 673 DVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFF 732 Query: 1160 GMSLDGYADMNIPIFTTDQADILRNRFDKVEALSGWDNNDTLI---GDSRVFGDIAAGDI 1216 G IF D L D + L G NDTL GD +++G D Sbjct: 733 GSKFT-------DIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGG-DGNDK 784 Query: 1217 TATTEGVFFNDGLDQAGLDRIAGLDQIVQVGQTGLFESGNVLFGGGGSDVIEGNGGDDIL 1276 G + +G D D QV L + NVLFGG G+D + G+ G D+L Sbjct: 785 LIGVAGNNYLNGGDG---------DDEFQVQGNSL--AKNVLFGGKGNDKLYGSEGADLL 833 Query: 1277 DGD 1279 DG Sbjct: 834 DGG 836 Score = 43.0 bits (101), Expect = 2e-05 Identities = 51/224 (22%), Positives = 79/224 (35%), Gaps = 54/224 (24%) Query: 970 EHIVVGGTDGDDT-IITDFGDDGIWGDAGDDRIESGAGVDLVNGGAGNDIIT-DSGDTG- 1026 +H VG + I + GD GDD++ AG + G G+D++ D DTG Sbjct: 598 QHASVGNNQYREIRIESHLGD-------GDDKVFLSAGSANIYAGKGHDVVYYDKTDTGY 650 Query: 1027 ---DFLKGDEGDDVIAN---SNGIDILMGGSGKDVVFVG--------------------- 1059 D K E + + +L + V VG Sbjct: 651 LTIDGTKATEAGNYTVTRVLGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNL 710 Query: 1060 -VDDT--------------EVFAGEGDDFVLGGDGVDFLLGNEGDDWMEAGGGFDTTAGD 1104 D + F + D G DG D + GN+G+D + G DT +G Sbjct: 711 TETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGG 770 Query: 1105 NSELFFNSAIKGHDVMFAGSEEHDFDAESGDDIM-VQGESVMRN 1147 N + G+D + + + + GDD VQG S+ +N Sbjct: 771 NGDDQLYGG-DGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKN 813 Score = 43.0 bits (101), Expect = 2e-05 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 12/78 (15%) Query: 1807 DTTGAINGNNGVDILVGDGAANILEGAGSNDLIFAGAGDDTINWTATSIGGVDIANDGRD 1866 D I GN+G D L GD + L G +D ++ G G+D + I G + Sbjct: 744 DGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKL-----------IGVAGNN 792 Query: 1867 FVDGGAGTLDRFVVNGSG 1884 +++GG G D F V G+ Sbjct: 793 YLNGGDGD-DEFQVQGNS 809 Score = 39.6 bits (92), Expect = 3e-04 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Query: 1781 TINGGSFNYTVSDGFATDPASVQVVRDTTGAINGNNGVDILVGDGAANILEGAGSNDLIF 1840 + G + N ++ G D VQ + G G D L G A++L+G +DL+ Sbjct: 784 KLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLK 843 Query: 1841 AGAGDDTINWTATSIGGVDIANDGRD 1866 G G+D + + G I +DG Sbjct: 844 GGYGNDIYRYLSGY-GHHIIDDDGGK 868 Score = 39.2 bits (91), Expect = 3e-04 Identities = 36/178 (20%), Positives = 54/178 (30%), Gaps = 27/178 (15%) Query: 1812 INGNNGVDILVGDGAANILEGAGSNDLIFAGAGDDTINWTATSIGGVDIANDGRDFVDGG 1871 + G D G +I GA +DLI G+D + + G D + GG Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRL-----------YGDKGNDTLSGG 770 Query: 1872 AGTLDRFVVNGSGSEEAFVVYAASAALAAGFTGLKPGTEIVITRNGTVIAELDNIEEITI 1931 G D + G G+++ V + G E + N L Sbjct: 771 NG--DDQLYGGDGNDKLIGVAGNNY-----LNGGDGDDEFQVQGNSLAKNVLFG------ 817 Query: 1932 NTGAGSDTVTAVGDFDPTSLNFNTITINGDGGNDTVDVSTLQSAHRILFRSNGGNDTI 1989 G G+D + D + G GND H I+ G D + Sbjct: 818 --GKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIY-RYLSGYGHHIIDDDGGKEDKL 872 Score = 37.6 bits (87), Expect = 0.001 Identities = 44/179 (24%), Positives = 67/179 (37%), Gaps = 39/179 (21%) Query: 2846 GAGRDVIFAGAGNDQVFAGDGADMIY---GDAGADRIFGHQGNDLINAGAGDDIVFGGAG 2902 G G D +F AG+ ++AG G D++Y D G I G + + N + G Sbjct: 617 GDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVL----GG 672 Query: 2903 NDLIVAELSDGNDVYYGDDSE------------GGSGIDTLD--------LSAATANVTV 2942 + ++ E+ +V G +E G + D + A+ Sbjct: 673 DVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFF 732 Query: 2943 NLGSGPLFHGSASGSQT-----GNDTLWSIENVYTGSGNDTITASNAVNVISGGTGNDT 2996 +FHG A G GND L Y GNDT++ N + + GG GND Sbjct: 733 GSKFTDIFHG-ADGDDLIEGNDGNDRL------YGDKGNDTLSGGNGDDQLYGGDGNDK 784 Score = 32.2 bits (73), Expect = 0.041 Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 22/146 (15%) Query: 2889 NAGAGDDIVFGGAGNDLIVAELSDGND-VYYGDDSEGGSGIDTLDLSAATA----NVTVN 2943 + G GDD VF AG+ I A G+D VYY + +G T+D + AT VT Sbjct: 615 HLGDGDDKVFLSAGSANIYA--GKGHDVVYY---DKTDTGYLTIDGTKATEAGNYTVTRV 669 Query: 2944 LGSGPLF-------HGSASGSQTGNDTLWSIENVYTGSGNDTITAS-NAVNVISGGTGND 2995 LG + G +T S E + N T T + +V + G T D Sbjct: 670 LGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRAD 729 Query: 2996 TF---RFTST-SAANGDTILDFEPGD 3017 F +FT A+GD +++ G+ Sbjct: 730 KFFGSKFTDIFHGADGDDLIEGNDGN 755
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 119 bits (299), Expect = 1e-29 Identities = 58/170 (34%), Positives = 86/170 (50%), Gaps = 13/170 (7%) Query: 344 DHIVAGSGNDIVYAGAGNDIVFAGPGNDVVFGGAGNDRLFGEDGDDILFGEDGNDTLFGG 403 + ++ + D + DI G+D++ G GNDRL+G+ G+D L G +G+D L+GG Sbjct: 720 EELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGG 779 Query: 404 AGADILIGDVGDDRLYGDAGNDTLDGGDGDDEL---DGGDGNDRMAGGDGDDTLAGAAGN 460 G +D+L G AGN+ L+GGDGDDE + + GG G+D L G+ G Sbjct: 780 DG---------NDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGA 830 Query: 461 DTLIDGLGADIVRGGTGND-YVVAAADGAPDDYSGDAGRDTLDYSAANTR 509 D L G G D+++GG GND Y + G D L + + R Sbjct: 831 DLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFR 880 Score = 115 bits (290), Expect = 1e-28 Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 10/204 (4%) Query: 283 GNLLIKQTAHFNVVEPPPIIGGAGDDNLLGTRCADTIIGNAGDDNIDGREGSDTISGGEG 342 + +T + VE +IG D G++ D G GDD I+G +G+D + G +G Sbjct: 706 NGKNLTETDNLYSVEE--LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKG 763 Query: 343 HDHIVAGSGNDIVYAGAGNDIVFAGPGNDVVFGGAGNDRLFGEDG---DDILFGEDGNDT 399 +D + G+G+D +Y G GND + GN+ + GG G+D + ++LFG GND Sbjct: 764 NDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDK 823 Query: 400 LFGGAGADILIGDVGDDRLYGDAGNDT--LDGGDGDDEL-DGGDGNDRMAGGDG--DDTL 454 L+G GAD+L G GDD L G GND G G + D G D+++ D D Sbjct: 824 LYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVA 883 Query: 455 AGAAGNDTLIDGLGADIVRGGTGN 478 GND ++ +++ G N Sbjct: 884 FKREGNDLIMYKGEGNVLSIGHKN 907 Score = 105 bits (263), Expect = 3e-25 Identities = 67/199 (33%), Positives = 90/199 (45%), Gaps = 22/199 (11%) Query: 382 LFGEDGDDILFGEDGNDTLFGGAGADILIGDVGDDRLYGDAGNDTLDGGDGDDELDGGDG 441 L G D FG D G G D++ G+ G+DRLYGD GNDTL GG+GDD+L GGDG Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDG 781 Query: 442 NDRMAGGDGDDTLAGAAGNDTLI---DGLGADIVRGGTGNDYVVAAADGAPDDYSGDAGR 498 ND++ G G++ L G G+D + L +++ GG GND + D G G Sbjct: 782 NDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLY--GSEGADLLDGGEGD 839 Query: 499 DTLDYSAANTRIAVDLERGTADGDEIGHDTIAGFEEIIGGSGDDDLS---AGADAVTIRG 555 D L N D+ R GH I G +D LS V + Sbjct: 840 DLLKGGYGN-----DIYR---YLSGYGHHIIDD-----DGGKEDKLSLADIDFRDVAFK- 885 Query: 556 GSGDDLVSDGAGEDVVDAG 574 G+DL+ +V+ G Sbjct: 886 REGNDLIMYKGEGNVLSIG 904 Score = 98.1 bits (244), Expect = 5e-23 Identities = 75/328 (22%), Positives = 114/328 (34%), Gaps = 81/328 (24%) Query: 319 IIGNAGDDNIDGREGSDTISGGEGHDHIVAGSGNDIVYAGAGNDIVFAGPGN-------- 370 +I +A N RE G+G D + +G+ +YAG G+D+V+ + Sbjct: 596 LIQHASVGNNQYREIRIESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDG 655 Query: 371 ------------DVVFGG--------AGNDRLFGEDGDDILFGEDGNDTLFGGAGADI-- 408 V+ G + G+ + + T G Sbjct: 656 TKATEAGNYTVTRVLGGDVKVLQEVVKEQEVSVGKRTEKTQY-RSYEFTHINGKNLTETD 714 Query: 409 -------LIGDVGDDRLYGDAGNDTLDGGDGDDELDGGDGNDRMAGGDGDDTLAGAAGND 461 LIG D+ +G D G DGDD ++G DGNDR+ G G+DTL+G G+D Sbjct: 715 NLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDD 774 Query: 462 TLIDGLGADIVRGGTGNDYVVAAADGAPDDYSGDAGRDTLDYSAANTRIAVDLERGTADG 521 L G G D + G GN+Y+ +G G D Sbjct: 775 QLYGGDGNDKLIGVAGNNYL-----------NGGDGDDEFQ------------------- 804 Query: 522 DEIGHDTIAGFEEIIGGSGDDDLSAGADAVTIRGGSGDDLVSDGAGEDVVDAGAGDD-RV 580 + GG G+D + G G DL+ G G+D++ G G+D Sbjct: 805 ---VQGNSLAKNVLFGGKGND---------KLYGSEGADLLDGGEGDDLLKGGYGNDIYR 852 Query: 581 LAAMDGADDRYDGGADCDTMDYSRATLR 608 + G D G D + + R Sbjct: 853 YLSGYGHHIIDDDGGKEDKLSLADIDFR 880 Score = 53.0 bits (127), Expect = 4e-09 Identities = 52/267 (19%), Positives = 85/267 (31%), Gaps = 42/267 (15%) Query: 422 AGNDTLDGGDGDDELDGGDGNDRMAGGDGDDTLAGAAGNDTLIDGLGADIVRGGTGNDYV 481 G+D + G + G G+D + D G T G V G D Sbjct: 618 DGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDG--TKATEAGNYTVTRVLGGDVK 675 Query: 482 VAAADGAPDDYSGDAGRDTLDYSAANTRIAVDLERGTADGDEIGHDTIAGFEEIIGGSGD 541 V + S + Y + + D + EE+IG + Sbjct: 676 VLQEVVKEQEVSVGKRTEKTQYRSYEFT-------HINGKNLTETDNLYSVEELIGTTRA 728 Query: 542 D--------DLSAGADAV----------TIRGGSGDDLVSDGAGEDVVDAGAGDDRVLAA 583 D D+ GAD + G G+D +S G G+D + G G+D+++ Sbjct: 729 DKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGV 788 Query: 584 MDGADDRYDGGADCDTMDYSRATLRVNIDLGEETAEGIEIGKDLLANFERIIGGSGDDDF 643 ++ +GG D +L N+ G +++ G G D Sbjct: 789 --AGNNYLNGGDGDDEFQVQGNSLAKNVLFGG-------------KGNDKLYGSEGADLL 833 Query: 644 IAGSSSVSFTGGEGNDTFQFQRRDDDH 670 G GG GND +++ H Sbjct: 834 DGGEGDDLLKGGYGNDIYRYLSGYGHH 860 Score = 30.3 bits (68), Expect = 0.037 Identities = 9/33 (27%), Positives = 15/33 (45%) Query: 635 IGGSGDDDFIAGSSSVSFTGGEGNDTFQFQRRD 667 G GDD + S + G+G+D + + D Sbjct: 615 HLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTD 647
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 286 bits (734), Expect = 3e-94 Identities = 101/452 (22%), Positives = 181/452 (40%), Gaps = 15/452 (3%) Query: 5 DSSEFVPVAVSPRESGATSEDKPFRLWPRVLGGVSLVALLVIGCGGWSALAKLEGAVITS 64 D +EF+P + E P PR++ + ++ S L ++E + Sbjct: 37 DENEFLPAHLELIE-------TPVSRRPRLVA--YFIMGFLVIAFILSVLGQVEIVATAN 87 Query: 65 GAVKVDQNLKEVQHRDGGIVKMLAVRQGDFVREGQVLATLDDVQIKAELLIVRSQLSEAL 124 G + KE++ + IVK + V++G+ VR+G VL L + +A+ L +S L +A Sbjct: 88 GKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQAR 147 Query: 125 GRRARLTA-----ERDNLAAIDFPSELTGLSTTSETVMVGERRLFAGNKLTRDSQKEQLE 179 + R E + L + P E SE ++ L T +QK Q E Sbjct: 148 LEQTRYQILSRSIELNKLPELKLPDE-PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206 Query: 180 LSVGQTGEEINGMEARLAAKEEEIKLVSAEREKLLGLFDRKIVEYARVYSVQRDWARILG 239 L++ + E + AR+ E ++ + + L ++ + V + + + Sbjct: 207 LNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVN 266 Query: 240 ERGEIAAGIARAKVRTTEIRLQIIAVDQNASTEAQRELRTVDARIAELSERRVAIEDRLA 299 E + + + + + + V Q E +LR I L+ E+R Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQ 326 Query: 300 RTDIKAPIAGYVNELFVFTVGGVITPAARIATIVPDNAALRFEVKIAPVDIDQVREGQPA 359 + I+AP++ V +L V T GGV+T A + IVP++ L + DI + GQ A Sbjct: 327 ASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNA 386 Query: 360 RVRLSAFSRATTPELQARVAQVSPAPARDPATGQESYIAYVQLTDEAAALIHGLRLVPGM 419 +++ AF L +V ++ D G + + + + L GM Sbjct: 387 IIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGM 446 Query: 420 PAEVFISTQERTAASYLLKPMSDQFNRAFRER 451 I T R+ SYLL P+ + + RER Sbjct: 447 AVTAEIKTGMRSVISYLLSPLEESVTESLRER 478
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 32.9 bits (75), Expect = 0.002 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 6/40 (15%) Query: 99 FTTSFHTRFPEYVSARM-PIPESWVWALLRR---FHGASH 134 F T+FH P+Y A + PIP + R FHG SH Sbjct: 146 FDTAFHQTMPDY--AYLYPIPYEYYTKYKIRKYGFHGTSH 183
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.5 bits (76), Expect = 0.002 Identities = 30/215 (13%), Positives = 55/215 (25%), Gaps = 31/215 (14%) Query: 278 ARPEATPESELVIVTAAETDGIEFVEPMATP-ADVVPTTSHHQSAAVAETSEAQTASEDE 336 TP + V + ++ E P P T + VAE S+ ++ Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESK---- 1049 Query: 337 AADVDAMLDLIATEMSAPQPPEPGELEAAIAAAQADAEQTAEAALDAAERSEIEQLAAEV 396 E + E Q E A +A + EV Sbjct: 1050 -----------TVEKNEQDATET-------------TAQNREVAKEAKSNVKANTQTNEV 1085 Query: 397 AIQQQHAEEAAGLDAAAAPSIDVSTFEIGERGEPLHGTQHAAQPIMAAAATMSAQTPAPG 456 A +E + +++ E + + +Q + + Q A Sbjct: 1086 AQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEP 1145 Query: 457 ATASLGAALIASGVVAQPSQPRSDPLAPLRRMSQA 491 A + I + +D P + S Sbjct: 1146 ARENDPTVNIKEP--QSQTNTTADTEQPAKETSSN 1178
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 29.6 bits (66), Expect = 0.019 Identities = 10/25 (40%), Positives = 13/25 (52%) Query: 105 PLAILAVFMVTACAWTPMVPLTDGY 129 ++ L V +T CAW P PL G Sbjct: 10 AISSLLVLSLTGCAWIPSTPLVQGA 34
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.010 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 15/59 (25%) Query: 181 GAGDFDELVRTLQRTLGLTVFMVTHDLDSLHTACDRIAVLGDGKVIAAGSMADMQASQH 239 GD D ++ LQ+ L DL S + R + G V ++D+Q + Sbjct: 224 PNGDIDSVILFLQKALS-------ADLQSQQSGSGREKL---GIV-----ISDLQKLKE 267
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 44.1 bits (104), Expect = 4e-07 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 10/136 (7%) Query: 613 LSLSPQYATAAINLGDLYRQRGRDSEGEIVLRAALAVSPRDAALHHALGLNLTRLKRPDD 672 +S +L Q G+ + V +A + D+ LG + + D Sbjct: 29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88 Query: 673 ALGELQRATDLEPEQPRYPYVYAVALHSSGRRAEAMTVLKGALRTHPNNPE--------- 723 A+ ++ ++PR+P+ A L G AEA + L A + E Sbjct: 89 AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVS 148 Query: 724 -ILRALLSFTQMAGDT 738 +L A+ +M + Sbjct: 149 SMLEAIKLKKEMEHEC 164 Score = 33.4 bits (76), Expect = 0.001 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 5/122 (4%) Query: 643 LRAALAVSPRDAALHHALGLNLTRLKRPDDALGELQRATDLEPEQPRYPYVYAVALHSSG 702 + +S ++L N + + +DA Q L+ R+ + G Sbjct: 25 IAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMG 84 Query: 703 RRAEAMTVLKGALRTHPNNPE----ILRALLSFTQMAGDTPAALGYAEQLAIVTPDDKEL 758 + A+ P LL ++A + L A++L + KEL Sbjct: 85 QYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAE-AESGLFLAQELIADKTEFKEL 143 Query: 759 AE 760 + Sbjct: 144 ST 145
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 35.8 bits (82), Expect = 1e-05 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 23 ALTEALAQVSPKAQAKAHKSAQDFEAMFLNSMFSQMTSGLKGDGPFGDTVGTGVWRSMLT 82 +L E A+ A A+ E MF+ M M L DG F T ++ SM Sbjct: 17 SLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDGLFSSE-HTRLYTSMYD 75 Query: 83 DQYAQTVAKAGGVGIASDVFRTLILQQ 109 Q AQ + G+G+A + + + +Q Sbjct: 76 QQIAQQMTAGKGLGLAEMMVKQMTPEQ 102
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 382 bits (983), Expect = e-134 Identities = 184/371 (49%), Positives = 253/371 (68%), Gaps = 11/371 (2%) Query: 8 LLKLAAAAL----SALLLSGVAASATSRIKDLANIEGVRQNQLIGYGLVVGLNGTGDTLN 63 +L++ AAAL L + A + TSRIKD+A+++ R NQLIGYGLVVGL GTGD+L Sbjct: 3 VLRIIAAALVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLR 62 Query: 64 NIPFTKQSLQAMLERMGVNIRGATIRTGNVAAVMVTGNLPAFATQGTRMDVTVSALGDAK 123 + PFT+QS++AML+ +G+ +G N+AAVMVT NLP FA+ G+R+DVTVS+LGDA Sbjct: 63 SSPFTEQSMRAMLQNLGITTQGGQSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDAT 122 Query: 124 NLQGGTLLVTPLLGADGNVYAVAQGSLAIGGFQAEGEAAKITRGVPTVGRIANGAIIERE 183 +L+GG L++T L GADG +YAVAQG+L + GF A+G+AA +T+GV T R+ NGAIIERE Sbjct: 123 SLRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERE 182 Query: 184 IEFALNRLPNVRLALRNADFTTAKRIAAAVNDF----LGTKSAEPIDPSTVQLSIPAEFK 239 + N+ L LRN DF+TA R+A VN F G AEP D + + P Sbjct: 183 LPSKFKDSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRVA- 241 Query: 240 GNAVAFLTEIEQLQVEPDQAAKIIIDERSGIIVMGRDVRVATVAVAQGNLTVSISESPQV 299 + + EIE L VE D AK++I+ER+G IV+G DVR++ VAV+ G LTV ++ESPQV Sbjct: 242 -DLTRLMAEIENLTVETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQV 300 Query: 300 SQPNPLSRGRTTVTPNSRIGVTEDGKKLALVKDGVSLQQLVDGLNGLGIGPRDLIGILQA 359 QP P SRG+T V P + I ++G K+A+V+ G L+ LV GLN +G+ +I ILQ Sbjct: 301 IQPAPFSRGQTAVQPQTDIMAMQEGSKVAIVE-GPDLRTLVAGLNSIGLKADGIIAILQG 359 Query: 360 IKAAGAIEADI 370 IK+AGA++A++ Sbjct: 360 IKSAGALQAEL 370
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.011 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 8/94 (8%) Query: 51 LEALLAMQGVEDATERRKRSVARGRTALDVLDDLK--IGLLAGNFDTATVARLRAAAAE- 107 L ALL +G A E + T + DL +G G ++R E Sbjct: 771 LWALLTREG-APAAEGAAQKGYSVNTTFVTIADLVQALGADPGKSSPMLEGQVRDWLNEN 829 Query: 108 ----LKASSGDPGLDAVLSEIELRVEVELAKAGQ 137 L+ +SG + ++ V E +A Q Sbjct: 830 GWEYLRETSGQRRRGYMRPQVWPPVIAEDKEADQ 863
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 164 bits (416), Expect = 2e-52 Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 25/214 (11%) Query: 50 QPGYKPVQMPMPKPEVASYNANSLWRN------GSRAFFRDQRAAKVGDIMTVTVNFTDK 103 G Q P+P P + S++++ G + F D+R +GD +T+ + Sbjct: 31 VQGATSAQ-PVPGPTPVA--NGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVS 87 Query: 104 ANIANQTQRSRSSSEDSGITDFAGSKLLTGNAAQVLPG------RLLSTDSTSTADGKGS 157 A+ ++ SR + G + L G + +T +GKG Sbjct: 88 ASKSSSANASRDGKTNFGF----------DTVPRYLQGLFGNARADVEASGGNTFNGKGG 137 Query: 158 VQRQEALQTSVAAVVTQVLPNGNLVVEGKQEIRVNFEVRELIVAGIVRPEDIQSDNTIDS 217 ++ V QVL NGNL V G+++I +N + +G+V P I NT+ S Sbjct: 138 ANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPS 197 Query: 218 SKIAQARIAYGGRGQITDVQQPRYGQQVMDVLLP 251 +++A ARI Y G G I + Q + Q+ L P Sbjct: 198 TQVADARIEYVGNGYINEAQNMGWLQRFFLNLSP 231
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 38.0 bits (88), Expect = 3e-05 Identities = 10/47 (21%), Positives = 22/47 (46%) Query: 214 MQQKALEQANVEVVNEISDLIAAQRAYEMNAKVVSAADQMLQSTSNM 260 + + + V + E +L Q+ Y NA+V+ A+ + + N+ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 35.3 bits (81), Expect = 2e-04 Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 4 LYTAATGMAAQELNVQVISNNIANMRTTGYKKQT 37 + A +G+ A + + SNNI++ GY +QT Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 39.6 bits (92), Expect = 2e-07 Identities = 14/75 (18%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 29 NGPSFGAMVKEAMGSVLDAGRKSDAQTVAMANGKS--NIMDVVTAVAETDVAVSTLVSVR 86 SF + A+ + D + Q G+ + DV+T + + V++ + VR Sbjct: 29 PTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVR 88 Query: 87 DRVIQSYEDILRMPI 101 ++++ +Y++++ M + Sbjct: 89 NKLVAAYQEVMSMQV 103
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 55.2 bits (133), Expect = 5e-14 Identities = 22/76 (28%), Positives = 42/76 (55%) Query: 5 ETLDVARDAVWTIVIVSTPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILAMFLTFVL 64 + + A++ ++I+S +V ++G+ V L Q +TQ+QEQTL F K+L + L L Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62 Query: 65 TLPFMADVLHAEMLRI 80 + +VL + ++ Sbjct: 63 LSGWYGEVLLSYGRQV 78
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 120 bits (303), Expect = 3e-35 Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 2/231 (0%) Query: 15 FMLVFARIGAMVMLFPTLGESNIPVRIKLSIALGLTLIILPLHRSAYQVDMSSLTPLLVM 74 + R+ A++ P L E ++P R+KL +A+ +T I P + S L + Sbjct: 16 YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS--FFALWL 73 Query: 75 MIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLTILG 134 +Q+I+IGI LG T + +A++ AG +I Q+GL F T VDP ++ + +L Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 135 VTMLFATDSHHLVIQALSDSYKIFAPGELLSSGDVAALATKAFAASFKIGMQLAAPFLVF 194 + + + H +I L D++ G + + TKA + F G+ LA P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 195 GLVFNIGLGILARLMPQMQVYFVGVPLSIAIGFIILAAVLTTMMSTFLNYF 245 L N+ LG+L R+ PQ+ ++ +G PL++ +G ++AA++ + + F Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 315 bits (810), Expect = e-108 Identities = 107/345 (31%), Positives = 179/345 (51%), Gaps = 3/345 (0%) Query: 7 EEKQQEPTQKRLDDALKRGDVAKSQEVNTWFVIAGATLLLSSFSGSIGTGVTGPMRALIE 66 EK ++PT K++ DA K+G VAKS+EV + +I + +L S + + + Sbjct: 3 GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSK-LMLIPA 61 Query: 67 KSWMLKVDGAGLLALTKSLLLMLVSVLGVPLFLLMLVAIGSNLIQHRLVFSTEGLTPKLS 126 + L A L + ++LL + L + L+AI S+++Q+ + S E + P + Sbjct: 62 EQSYLPFSQA-LSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 127 KLSPLEGAKRLFGKQALANFLKGLFKVIALGVVMVAVLYPERDRLDALLQMDVVSLLGVT 186 K++P+EGAKR+F ++L FLK + KV+ L +++ ++ L L + + + Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 187 VGLTLKLMGSVAAVLAFVAAGDYFFQYRTWHERQKMSLQEVKDEYKQSEGDPHIKGRIRQ 246 + +LM ++ DY F+Y + + KMS E+K EYK+ EG P IK + RQ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 247 IRYQRMKKRMMAAVPSASVVITNPTHFSVALKYERG-MQAPICVAKGADAIAFKIREVAK 305 + + M V +SVV+ NPTH ++ + Y+RG P+ K DA +R++A+ Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 306 ANNVPIVENVPLARALYATVEVDGEIPIEHYHAVAEVIGYVMNLK 350 VPI++ +PLARALY VD IP E A AEV+ ++ Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 3e-17 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 5/120 (4%) Query: 726 MTGQGTILLVEDEEGLRSLNARGLRSRGYNVIEASNGIEALEAFDEHGGSVDLVVSDVVM 785 MTG TIL+ +D+ +R++ + L GY+V SN G DLVV+DVVM Sbjct: 1 MTG-ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVM 57 Query: 786 PEMDGPSLLKAMRARNSDLKIIFVSGYAE-DAFEKSLPENEQFAFLAKPFALSALVAKVK 844 P+ + LL ++ DL ++ +S K+ E + +L KPF L+ L+ + Sbjct: 58 PDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKAS-EKGAYDYLPKPFDLTELIGIIG 116
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 31.1 bits (70), Expect = 0.006 Identities = 10/42 (23%), Positives = 18/42 (42%) Query: 138 VLLVVVVARLAWSWWQRRKNPQPAPAYASNAGPTVGPGPEPS 179 V+ ++ V+ + W W++ KNPQP + T Sbjct: 9 VIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQ 50
>PF06776#Invasion associated locus B Length = 214 Score = 27.6 bits (61), Expect = 0.035 Identities = 9/42 (21%), Positives = 14/42 (33%) Query: 1 MRIGLKALSRVGKAAAVAAMAAWAAPAAQAQTANASFFVTSK 42 + + R G +A A A + A+A V S Sbjct: 38 LASCRRLARRNGARLMLAGAMAIALSFGWSDRADAQGAVRSV 79
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 68.9 bits (168), Expect = 9e-16 Identities = 54/261 (20%), Positives = 107/261 (40%), Gaps = 16/261 (6%) Query: 7 LAGRRILVTGGGTGLGKSMAARFLQLGAEVHI--CGRRKGVCDETATELMDAYGGKVMTY 64 + G+ +TG G+G+++A GA + K ++ + + + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA---F 62 Query: 65 GVDIRDAGAVDHMVETIFSG-GPLTDLINNAAGNFISRTEELSPRGFDAVANIVMHGTFY 123 D+RD+ A+D + I GP+ L+N A LS ++A ++ G F Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 124 VTHAVGKRWIEGGHRGNVVSITTTWVRNGSPYVVPSAMSKSAIHAMTMSLATEWGRYGIR 183 + +V K ++ G++V++ + + A SK+A T L E Y IR Sbjct: 123 ASRSVSK-YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 184 LNTIAPGEIPTEGMSKRIKPGDEAGARTVKMN--------PMGRVGTMEELQNVAVFLIS 235 N ++PG T+ M + + + +K + P+ ++ ++ + +FL+S Sbjct: 182 CNIVSPGSTETD-MQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 236 GGCDWINGETIAMDGAQGLAM 256 G I + +DG L + Sbjct: 241 GQAGHITMHNLCVDGGATLGV 261
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 28.2 bits (63), Expect = 0.035 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 98 AAQQAVWGWRMLPVPV-IAAIHGVAFGGGFQLALGADIR 135 AA A GW+ LP+ + ++++ G G G L Sbjct: 220 AALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRNHHQS 258
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.5 bits (131), Expect = 1e-09 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 11/133 (8%) Query: 788 TILLVEDDELVRKFAIAQLQGLGYRTIAVCDGPSALKEVERGAAFDLLFTDVIMPGGLNG 847 TIL+ +DD +R L GY + + + + G DL+ TDV+MP N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE-NA 62 Query: 848 PQLAEAVARIRP-VRVLFTSGYT--ENAI--LHHGRLDPGALLLSKPYRRSDLARMVRAA 902 L + + RP + VL S AI G D L KP+ ++L ++ A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYD----YLPKPFDLTELIGIIGRA 118 Query: 903 LDQEYYVPAEPSA 915 L + P++ Sbjct: 119 LAEPKRRPSKLED 131
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 36.1 bits (83), Expect = 8e-05 Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 10/122 (8%) Query: 156 LLILLIIAVLVAIAVPFIWARSREPVSPARPLYEPSAA--EPIVTSEPAVPEPPAAPVSQ 213 L+ + I V + + + P S P P +PP PV Sbjct: 18 TLLSVCIHGAVVAGLLYTSVHQVIELP--APAQPISVTMVAPADLEPPQAVQPPPEPVV- 74 Query: 214 TPLFEQPFEAAPVAPDPAPQPASAEPVPSQNRPAPMAVVDDGREPIRDSEKSDTSASDGE 273 E E P+ P P E + +P P V + P RD + ++ + Sbjct: 75 ----EPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQ-PKRDVKPVESRPASPF 129 Query: 274 PP 275 Sbjct: 130 EN 131
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 75.0 bits (184), Expect = 7e-17 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 11/142 (7%) Query: 304 ADAAGAASIASVEACQSKLSTLVAAQKINFERGSAEIEQASLPVLKQLAAVIAHC--PAA 361 +AA + A A + + + F A ++ L QL + +++ Sbjct: 194 GEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDG 253 Query: 362 QIEVAGHTDANGKKAANEALSKRRAEAVADSLTKAGIGSAKLIAVGYGSAKPLGPNDTAE 421 + V G+TD G A N+ LS+RRA++V D L GI + K+ A G G + P+ N Sbjct: 254 SVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDN 313 Query: 422 AR---------AKNRRIEFAVK 434 + A +RR+E VK Sbjct: 314 VKQRAALIDCLAPDRRVEIEVK 335
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.0 bits (246), Expect = 2e-26 Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 21/260 (8%) Query: 2 AKALDGKVIIVTGAGRGIGREIALLAAREGAKVVVNDPGGAADGSGTDASPAEQVVEEIK 61 AK ++GK+ +TGA +GIG +A A +GA + D + E+VV +K Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVD---------YNPEKLEKVVSSLK 53 Query: 62 KEGGTAVANFETVAEAVPASKIVKQAVDTYGKLDGVVNNAGILRDAIFHRMSIDAFEQVI 121 E A A V ++ +I + G +D +VN AG+LR + H +S + +E Sbjct: 54 AEARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATF 113 Query: 122 KVHLMGSFYVSHAAARLYREQESGSFVHFTSTSGLIGNFGQANYAAAKLGIVGLSKSIAL 181 V+ G F S + ++ ++ SGS V S + A YA++K V +K + L Sbjct: 114 SVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGL 173 Query: 182 DMQRFNVRSNCVSPFA---------WSRLIG---TIPTETEEEKARVARMQQMGPEKIAP 229 ++ +N+R N VSP + W+ G I E K + + P IA Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 230 LSVFLLGDAAKDVTGQIFAV 249 +FL+ A +T V Sbjct: 234 AVLFLVSGQAGHITMHNLCV 253
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 58.1 bits (140), Expect = 3e-11 Identities = 32/163 (19%), Positives = 51/163 (31%), Gaps = 26/163 (15%) Query: 137 GTMTGQGSGFFISADGYAVTNNHVVDGADKVEVTTD------------DGKTYKAKVIGT 184 T T SG + +TN HVVD +G ++ Sbjct: 98 PTGTFIASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKY 156 Query: 185 DQRTDLALIKAEGRTD-------FPFAKLSE-GKPRIGDWVLAVGNPFGLGGTVTAGIVS 236 DLA++K A +S + ++ + G P + Sbjct: 157 SGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK----PVATMW 212 Query: 237 ASGRDIGNGPYDDFIQIDAPVNKGNSGGPAFDTNGEVMGVNTA 279 S I + +Q D GNSG P F+ EV+G++ Sbjct: 213 ESKGKITYLK-GEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 8e-20 Identities = 28/112 (25%), Positives = 51/112 (45%) Query: 17 RLLIIEDDRESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVVDRMLPKRDGLS 76 +L+ +DD L +A G+ + S+ +GD D++V D ++P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 77 VIGTLREKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVE 128 ++ +++ P L++SA IK G DYLPKP+ EL+ + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF06580#Sensor histidine kinase Length = 349 Score = 42.5 bits (100), Expect = 2e-06 Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 33/117 (28%) Query: 359 LVENAIKYGQPQLALAAPGAEPNAAAPPDATVILIEARRDGDQVLLSVTDHGRGIPETDR 418 LVEN IK+G QL P IL++ +D V L V + G Sbjct: 263 LVENGIKHGIAQL--------------PQGGKILLKGTKDNGTVTLEVENTG-------- 300 Query: 419 KHAVERFVRLEASRTQPGSGLGLSLASA-VATLHGGE--LRLSDAQPGLRATLAIPA 472 L T+ +G GL + L+G E ++LS+ Q + A + IP Sbjct: 301 --------SLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 146 bits (369), Expect = 1e-40 Identities = 91/385 (23%), Positives = 144/385 (37%), Gaps = 76/385 (19%) Query: 144 AVNNSPNLPNPMPSLQAQTWNLDLIGATAAYDRGFTGAGVKVTVADTGFDVANAGLVNRL 203 + + + +++I A A +++ G GVKV V DTG D + L R+ Sbjct: 6 HIIPYQVIKQ-EQQVNEIPRGVEMIQAPAVWNQT-RGRGVKVAVLDTGCDADHPDLKARI 63 Query: 204 VTSVGRNYVVKDGTTYDPNELTPLTGTDMHGSHVAGIVAGEKFDNVGAHGVAYDARVIPL 263 + GRN+ D DP G HG+HVAG +A + G GVA +A ++ + Sbjct: 64 IG--GRNFT--DDDEGDPEIFKDYNG---HGTHVAGTIAA-TENENGVVGVAPEADLLII 115 Query: 264 RILTAAGYSVAGDGDSSASALNYFAGLTGTMVYNASYGPNFNDFTNLTRWTVGNIADEGN 323 ++L +G D + Y + + S G ++ + Sbjct: 116 KVL---NKQGSGQYDWIIQGIYYAIEQ-KVDIISMSLGGP------------EDVPELHE 159 Query: 324 AALNALRAGKLVVAANGNDRGSNPIAARNPSGLALLPFLNPAHAGLGVYDDQGQQLDGTV 383 A A+ + LV+ A GN+ P Y++ Sbjct: 160 AVKKAVASQILVMCAAGNE---------GDGDDRTDELGYPG-----CYNE--------- 196 Query: 384 LQRQNGQIIAVMSVGITKAAAWYSNLCGVAASWCVAAPGGDDRTGAEVYSTVPQNTYAFE 443 +I+V ++ + A+ +SN + APG D + STVP YA Sbjct: 197 -------VISVGAINFDRHASEFSNSN---NEVDLVAPGED------ILSTVPGGKYATF 240 Query: 444 SGTSMAAPTVSGAIAVLIQANPSYNARDLANL-----LFSTTEDLGAAGVDAVFGYGLIR 498 SGTSMA P V+GA+A++ Q + RDL L T LG + G GL+ Sbjct: 241 SGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLG--NSPKMEGNGLLY 298 Query: 499 LDRATDGPTSLAANSTVDVAAGQTS 523 L + L+ AG S Sbjct: 299 LTAVEE----LSRIFDTQRVAGILS 319
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.007 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 26/120 (21%) Query: 649 PIVADRRAIKQILINLLSNAVKF----TPDGGRVTVRSRTLEDSIVMMIADSGIGIAPQS 704 P + D + ++ L+ N +K P GG++ ++ ++ + + ++G Sbjct: 248 PAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN- 306 Query: 705 LRRLGQPFEQVESQLTKTYHGSGLGLA-IAKSLTRLHGGSMRLR--STLGAGTVVMVTLP 761 T +G GL + + L L+G +++ G MV +P Sbjct: 307 -----------------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 31.5 bits (71), Expect = 0.006 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 256 THPRNATPRLMPLPEAALQDARA-----IILAEPPPETVMRPQRRSAPDLLSQLMAAKS 309 TH + P L A + R I L EP P M + S+P++LS L+A S Sbjct: 16 THLQPQDPTLAQAVRATIAKHREHLLEFIRLDEPAPLNAMTLAQWSSPNVLSSLLAVYS 74
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 78.1 bits (192), Expect = 4e-20 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 2/153 (1%) Query: 6 KKRARRKAERPAEILDAAFEEFVKHGYSAARLEDVAALAGVTKGTIYFYFDTKERVFEEM 65 +K + E ILD A F + G S+ L ++A AGVT+G IY++F K +F E+ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 66 VRHKSNEFLPNLKDYALTLGGSHTERLRALVIFTYAHIAENRASREILRFLISEGGRFPG 125 + +Y G LR ++I R ++ + + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 126 L--VDRHFDEFVEPMMQQFKNVIDSGVAAGEFR 156 + V + + + + + A Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLP 155
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.2 bits (120), Expect = 6e-09 Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 4/130 (3%) Query: 70 VSGRVIERLVDVGAHVKAGDVLARIDPTEQRADLVGAQAAVAAA---EAQLRLAKATFER 126 + V E +V G V+ GDVL ++ AD + Q+++ A + + ++ + E Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 127 QKSLMASGFTTRVAFDQAQEGLRTAEGSLDTAKAQLGIATDALSYTELRASAAGIITARN 186 K L F E SL + L A +T Sbjct: 163 NK-LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLA 221 Query: 187 IEVGQVAQSA 196 S Sbjct: 222 RINRYENLSR 231 Score = 37.9 bits (88), Expect = 5e-05 Identities = 28/178 (15%), Positives = 59/178 (33%), Gaps = 10/178 (5%) Query: 27 EEAPQNRPAALVKTELVRLQPRQTVIRLTG-----DVQARVSTELSFRVSGRVI-ERLVD 80 E R +L+K + Q ++ L + ++ + RV RL D Sbjct: 180 SEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD 239 Query: 81 VGAHVKAGDVLARIDPTEQRADLVGAQAAVAAAEAQLRLAKATFERQKSLMASGFTTRVA 140 + + + A+ EQ V A + ++QL ++ K T Sbjct: 240 FSSLLHKQAI-AKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAK-EEYQLVTQLFK 297 Query: 141 FDQAQEGLRTAEGSLDTAKAQLGIATDALSYTELRASAAGIITARNI-EVGQVAQSAQ 197 + + LR ++ +L + + +RA + + + G V +A+ Sbjct: 298 NEILDK-LRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE 354
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.7 bits (90), Expect = 3e-05 Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 17/179 (9%) Query: 82 QALAAIDPFAAELAV-RSALADVATAQAQLANANATANRQRTLIETGAT-TKATLDSAEQ 139 L + A+ + A+ + + N Q IE+ K Q Sbjct: 235 SRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQ 294 Query: 140 --------SNSAAQAAVIRAQSSLTKAREQLSYTKLENEYAGVVTAVGVQ-VGQVVNPGQ 190 + L K E+ + + + V + V G VV + Sbjct: 295 LFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE 354 Query: 191 TVVTVARPDIREAVID--VADDLAGVLRTGMPLTVALQLDPRIR---VEGRVREISPQA 244 T++ + P+ + V + G + G + ++ P R + G+V+ I+ A Sbjct: 355 TLMVIV-PEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA 412 Score = 34.8 bits (80), Expect = 4e-04 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 10/91 (10%) Query: 75 GDVVSKGQALAAIDPFAAELAVRSALADVATAQAQLANANATANRQRTL---IETGATTK 131 G+ V KG L + AE AD Q+ L A R + L IE + Sbjct: 115 GESVRKGDVLLKLTALGAE-------ADTLKTQSSLLQARLEQTRYQILSRSIELNKLPE 167 Query: 132 ATLDSAEQSNSAAQAAVIRAQSSLTKAREQL 162 L + ++ V+R S + + Sbjct: 168 LKLPDEPYFQNVSEEEVLRLTSLIKEQFSTW 198
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 487 bits (1256), Expect = e-158 Identities = 248/1046 (23%), Positives = 439/1046 (41%), Gaps = 67/1046 (6%) Query: 6 LSDWALQHRSLVWYFMIAFMFAGLFSYLELGREEDPAFTIKTMVIQAKWPGASAEETTRQ 65 ++++ ++ W I M AG + L+L + P + + A +PGA A+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 66 VTDRIEKKLEELESLDYTKSITTP-GQTTVFVNLRDTTKARDVTPTWVRVRNMINDIKGD 124 VT IE+ + +++L Y S + G T+ + + T D V+V+N + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGT---DPDIAQVQVQNKLQLATPL 117 Query: 125 FPEGVIGPG-FNDRFGDVFGNIYAFTSDG--LTQRQLRDKVEE-VRAQVLQVPNVGRVDI 180 P+ V G ++ + + F SD TQ + D V V+ + ++ VG V + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 181 VGAQDEV-IFLEFSTRKVAALGLDQRSILTSLQAQNAITPSGVLQAGPE------RISVR 233 GAQ + I+L+ + L ++ L+ QN +G L P S+ Sbjct: 178 FGAQYAMRIWLDAD--LLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235 Query: 234 VSGQFTSEESLKAINLRVNDRFFP--LTDVATIRRGYSDPPTSLFRFKGEPAIGLTIGMK 291 +F + E + LRVN L DVA + G + + R G+PA GL I + Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKLA 294 Query: 292 AGANLLEFGQALKKEMTRISADLPVGAEVHLVSDQPQIVDDAVSGFTRALFEAVVIVLAI 351 GAN L+ +A+K ++ + P G +V D V ++ + LFEA+++V + Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 352 SFISLG-MRAGLVVAISIPLVLAITFMVMSYSGISLQRISLGALIIALGLLVDDAMIAVE 410 ++ L MRA L+ I++P+VL TF +++ G S+ +++ +++A+GLLVDDA++ VE Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 411 MMVARLEVGDTLAKAATYVYTS-TAFPMLTGTLVTVAGFIPIGLNSSAAGEFTFTLFVVI 469 + + K AT S ++ +V A FIP+ + G + I Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 470 AVSLLTSWIVAVLFTPLLGVTILPDKMKSHHENKGWFSTRFSRVLIFCM----------- 518 ++ S +VA++ TP L T+L HHENKG F F+ + Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 519 RRRWLTITVTLAAFALSIVGMRFVQQQFFPSSDRKELIVDWNLPKNSSIAETSAQMAQFE 578 + + A +V + F P D+ + LP ++ T + Q Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 579 REALQG-KDGIDHWSTYVGQGAPRFVLSFDVQPADFSFGQMVIVTRSLADRDR------- 630 L+ K ++ T G F + G + + +R+ Sbjct: 595 DYYLKNEKANVESVFTVNG---------FSFSGQAQNAGMAFVSLKPWEERNGDENSAEA 645 Query: 631 LRGELQGYLKKTFPGTDALVNLLDI-GPPVGRPVQYRL---SGPDIAKVRALSRELAGIV 686 + + L K G N+ I + L +G + +L G+ Sbjct: 646 VIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMA 705 Query: 687 AGNL-HLGDVVFDWMEPARVVKVDVLQDKARQLGVTSEDIASTLNSIVDGVSITQVRDDI 745 A + L V + +E K++V Q+KA+ LGV+ DI T+++ + G + D Sbjct: 706 AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG 765 Query: 746 YLVKVLGRANAAERGSIETLRNLQLSGSSGQSVPLAAVATFRYELEQPTIWRRSRLPTIT 805 + K+ +A+A R E + L + ++G+ VP +A T + P + R + LP++ Sbjct: 766 RVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSME 825 Query: 806 IKASIRDGVQPATVVQQLKTPIAEFSSKLPVGYSVAVGGSVEQSGKSQAPIAAVVPIMLF 865 I+ G + +SKLP G G Q S A+V I Sbjct: 826 IQGEAAPGT----SSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFV 881 Query: 866 AMATILMVQLQSFSRLFLVFAVAPLALIGVVAALLPSGAPLGFVAILGVLALIGILIRNS 925 + L +S+S V V PL ++GV+ A ++G+L IG+ +N+ Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 926 VILIVQIEHL-RSEGKPPWEAVVEATEHRMRPILLTAAAASLALIPIA------REVFWG 978 ++++ + L EGK EA + A R+RPIL+T+ A L ++P+A Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQN- 1000 Query: 979 PMAYAMMGGIIVGTVLTLLFLPALYV 1004 + +MGG++ T+L + F+P +V Sbjct: 1001 AVGIGVMGGMVSATLLAIFFVPVFFV 1026 Score = 88.7 bits (220), Expect = 6e-20 Identities = 91/516 (17%), Positives = 183/516 (35%), Gaps = 30/516 (5%) Query: 516 FCMRRRWLTITVTLAAFALSIVGMRFVQQQFFPSSDRKELIVDWNLPKNSSIAETSAQMA 575 F +RR + + + + + +P+ + V N P + + Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQTVQDTVT 62 Query: 576 QFEREALQGKDGIDH-WSTYVGQGAPRFVLSFDVQPADFSFGQMVIVTRSLADRDRLRGE 634 Q + + G D + + ST G+ L+F D Q+ + + L E Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSG-TDPDIAQVQVQNKLQLATPLLPQE 121 Query: 635 LQGYLKKTFPGTDALVNLLDIGPPVGRPVQYRLSGPDIAKVRALSRELAGIVAGNLHLGD 694 +Q + + + + Q +S + V+ L G+ GD Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGV-------GD 174 Query: 695 VVFDWMEPARVVKVDVLQDKARQLGVTSEDIASTLNSIVDGVSITQVRDDIYLVKVLGRA 754 V + A + +D D + +T D+ + L D ++ Q+ L A Sbjct: 175 VQLFGAQYAMRIWLD--ADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNA 232 Query: 755 NAAERG---SIETLRNLQLSGS-SGQSVPLAAVATFRYELEQPTIWRRSR-LPTITIKAS 809 + + + E + L + G V L VA E + R P + Sbjct: 233 SIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIK 292 Query: 810 IRDGVQPATVVQQLKTPIAEFSSKLPVGYSVAVGGSVEQSGKSQAPIAAVVPIMLFAMAT 869 + G + +K +AE P G V + + Q I VV + A+ Sbjct: 293 LATGANALDTAKAIKAKLAELQPFFPQGMKVLY--PYDTTPFVQLSIHEVVKTLFEAIML 350 Query: 870 ILMVQ---LQSFSRLFLVFAVA-PLALIGVVAALLPSGAPLGFVAILGVLALIGILIRNS 925 + +V LQ+ R L+ +A P+ L+G A L G + + + G++ IG+L+ ++ Sbjct: 351 VFLVMYLFLQNM-RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDA 409 Query: 926 VILIVQIE-HLRSEGKPPWEAVVEATEHRMRPILLTAAAASLALIPIA-----REVFWGP 979 ++++ +E + + PP EA ++ ++ A S IP+A + Sbjct: 410 IVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 980 MAYAMMGGIIVGTVLTLLFLPALYVAWFRIKMPEEG 1015 + ++ + + ++ L+ PAL + E Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLKPVSAEHH 505
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.5 bits (66), Expect = 0.037 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 2/125 (1%) Query: 297 LSMSVGDTTKLTAALAIGGLLGFGLASRVLSRGADPFRMASFGSMVGIPAFLAVIFAAEL 356 ++ T + +L F + + V + +D + I + Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99 Query: 357 QGVASVLTFGCGTALIGFGAGLFGHGTLTATMNAAPKDQAGLALGAWGAVQASAAGVAIA 416 S+L + G GA F + PK+ G A G G++ A GV A Sbjct: 100 HSFFSLLIMA--RFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPA 157 Query: 417 LGGIL 421 +GG++ Sbjct: 158 IGGMI 162
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 50.2 bits (120), Expect = 2e-09 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 4/115 (3%) Query: 12 PRLRVFLADDHPIVLSGMKM-LVAEAPELELVGEANDGPKALRRAIELRPDVAVFDLSMP 70 + +ADD + + + L ++ + A + + D+ V D+ MP Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG---DGDLVVTDVVMP 58 Query: 71 GMNGIDVTEKYLDAIPKARVLVLSVHEDGAYLRRLLKLGVGGYILKRSATDELIR 125 N D+ + A P VLV+S + + G Y+ K ELI Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG 113
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.023 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 31/111 (27%) Query: 636 VLQNLVSNALKY--RRPGRPCRIRVFAESRTEPRPRGEVGDSTISTRVCVSDNGIGFDPK 693 ++Q LV N +K+ + + +I + + G T+ V + G Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKG--------TKDNGTVTL----EVENTG------ 300 Query: 694 YAEQIFEPFQRLHGPDEYEGSGIGLA-ICRKIVQRHGGRVGVDTIPGSGST 743 L + E +G GL + ++ +G + G Sbjct: 301 ----------SLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV 341
>PF06580#Sensor histidine kinase Length = 349 Score = 36.4 bits (84), Expect = 4e-04 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 35/192 (18%) Query: 576 LNVMVNGIEASSRRLRALINDLAEYSRVGRQARPLAPISLNEVLSEVLADLKPNLQDTRA 635 LN + I + R ++ L+E R + +SL + L+ V + L L + Sbjct: 179 LNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYL--QLASIQF 236 Query: 636 AVSAD---DLPVVLCDASQIRQLLQNLISNALKY--RDAFRPPQIEISSAVDTETKDSHD 690 + + D L+Q L+ N +K+ + +I + D Sbjct: 237 EDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNG------ 290 Query: 691 RHPRVRVTISDNGIGFDPKYAEQIFEPFQRLHGPDEYEGTGIGLA-ICRKIVSRHGG--S 747 V + + + G L + E TG GL + ++ +G Sbjct: 291 ---TVTLEVENTG----------------SLALKNTKESTGTGLQNVRERLQMLYGTEAQ 331 Query: 748 ITATSMPGSGSA 759 I + G +A Sbjct: 332 IKLSEKQGKVNA 343
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 53.3 bits (128), Expect = 4e-11 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 14/127 (11%) Query: 8 PTILVAEDHDYDKLILTEVFARARIEADIRFVGDGEQMLDYLKRRHRYADDGSAPTPALI 67 TILVA+D + +L + +RA D+R + + ++ L+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRA--GYDVRITSNAATLWRWIAAGD----------GDLV 51 Query: 68 LLDLNMPRLDGRKVIRILRADEAIRHLPVIALSTSESPKHITEAYSIGINAYLVKPASIP 127 + D+ MP + ++ ++ LPV+ +S + +A G YL KP + Sbjct: 52 VTDVVMPDENAFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109 Query: 128 DYVSAIE 134 + + I Sbjct: 110 ELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 5e-13 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 13/170 (7%) Query: 1 MSRLATRILLIDDARIEFLAFERILHKIPDYRPTLDWISTYSDARAALEQDQHDLYFVDF 60 M+ IL+ DD + L + Y + S + + DL D Sbjct: 1 MTG--ATILVADDDAAIRTVLNQALSRA-GYDVRI--TSNAATLWRWIAAGDGDLVVTDV 55 Query: 61 RLGPDNGLDLVRHARSRGMTKPIIVLTGHGNAAVDQAATEVGANDYLVKGEFDAVLLERS 120 + +N DL+ + P++V++ A+E GA DYL K FD L Sbjct: 56 VMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP-FD---LTEL 111 Query: 121 MRYAARNAEALAELDRRLAESKANARELSAQTKRRAAAEADVLQVLRQTM 170 + R ALAE RR ++ + ++++ R+AA ++ +VL + M Sbjct: 112 IGIIGR---ALAEPKRRPSKLEDDSQD-GMPLVGRSAAMQEIYRVLARLM 157
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 113 bits (284), Expect = 2e-32 Identities = 78/254 (30%), Positives = 120/254 (47%), Gaps = 4/254 (1%) Query: 7 LDGRVALVTGAAGVIGAATIQLLAERGARIVAIDRDRRALDQVVAALPASTQ-PLALTAD 65 ++G++A +TGAA IG A + LA +GA I A+D + L++VV++L A + A AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 66 VTQEDQVAGYVRTAVERCGRIDVLYNNAGIEGDITPIVSTSLDGFRRVLDVNVIGVFLGM 125 V + G ID+L N AG+ I S S + + VN GVF Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 126 KHVLPVMHQQNSGSIINTASIAGLIGSNDIIAYTASKHAVIGMTKTAALECSGTKVRVNC 185 + V M + SGSI+ S + + AY +SK A + TK LE + +R N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 186 VCPGMIDSRMLSAIVEGRNPGPTPVP--TERIVERIPARRLGHAAEVASVVAFLASDEAS 243 V PG ++ M ++ N + E IP ++L +++A V FL S +A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 244 YVSGSAYTVDGGRT 257 +++ VDGG T Sbjct: 245 HITMHNLCVDGGAT 258
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 32.7 bits (74), Expect = 0.002 Identities = 17/46 (36%), Positives = 21/46 (45%) Query: 266 DCKNPETTVVNAQPEAPKPVAAPPQRRRQPPPQQPRQPAPAPPPPQ 311 + + V P APKP P + QPP QP PAP PP + Sbjct: 559 NGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGR 604
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 43.1 bits (101), Expect = 1e-06 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 41/191 (21%) Query: 186 SGTGFYVSGNGHIVTNNHVIAECS----AINVIPPG-------GAPLRATLVAKDKTN-D 233 +G V + ++TN HV+ A+ P A + K D Sbjct: 103 IASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGD 161 Query: 234 LAILKTSSSP----------PAVPGLRTQMRLGEAVYVFGFPLTGILSTSGNFTAGAITA 283 LAI+K S + PA + ++ + + V G+P G+ + Sbjct: 162 LAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYP--------GDKPVATMWE 213 Query: 284 TTGMEDD--TRLAQISAPVQPGNSGGPLLDKYGNVVGVIVSKL-NALNIAAATKDIPQNV 340 + G Q GNSG P+ ++ V+G+ + N N A + Sbjct: 214 SKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGA-------VFI 266 Query: 341 NFAIKSGIATN 351 N +++ + N Sbjct: 267 NENVRNFLKQN 277
>BORPETOXINB#Bordetella pertussis toxin B subunit signature. Length = 226 Score = 27.7 bits (61), Expect = 0.032 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 55 ASRLARTVRSDVFTVTVNRDFRGVIDGCASPQPGRDDTWINRRIRELYI 103 A+RL + S + V V R + VI C SP G+ + +R + LY+ Sbjct: 135 ATRLLSSTNSRLCAVFV-RSGQPVIGACTSPYDGKYWSMYSRLRKMLYL 182
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.9 bits (210), Expect = 3e-20 Identities = 29/101 (28%), Positives = 48/101 (47%) Query: 6 PTLLYIDDDEALGRLVSRGLKRQGFCVEHVLSGEAGLERLRKGGIDVVALDQYMPGLDGL 65 T+L DDD A+ ++++ L R G+ V + + G D+V D MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 ETLEQIQNIPDAPPVVFVTASQDSSIAVTALKAGAADYLVK 106 + L +I+ PV+ ++A A+ A + GA DYL K Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.2 bits (146), Expect = 1e-13 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 14/131 (10%) Query: 1 MSNPVTIIMIEDDEGHARLIERNIRRSGVNNEIIPFTSGTTALNYLFGPDGSGVEHQNRA 60 M+ TI++ +DD ++ + + R+G + I ++ T ++ DG Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYDVRI--TSNAATLWRWIAAGDGD-------- 49 Query: 61 LLVLLDLNLPDASGIDILRRIKENDHLKCTPVVVLTTTDDAQEIKRCYELGCNVYITKPV 120 LV+ D+ +PD + D+L RIK+ PV+V++ + + E G Y+ KP Sbjct: 50 -LVVTDVVMPDENAFDLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106 Query: 121 NYESFANAIRQ 131 + I + Sbjct: 107 DLTELIGIIGR 117
>PF06580#Sensor histidine kinase Length = 349 Score = 45.6 bits (108), Expect = 2e-07 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 21/103 (20%) Query: 401 LIDNALKY--LRSGVPGDIRIRARQKLGFVIFEIADNGRGIDPKDHQRIFDLFRRAGTQD 458 L++N +K+ + G I ++ + G V E+ + G + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 459 RPGQGIGLAHVRALVRRLGG---TMSVSSALGEGSTFTITLPA 498 G GL +VR ++ L G + +S G+ + +P Sbjct: 310 --STGTGLQNVRERLQMLYGTEAQIKLSEKQGKV-NAMVLIPG 349
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.002 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Query: 116 FIEVGSRVSAGETLFIIEAMKTMNQIPSPRAGTVTQILVEDGQPVEFGEPMV 167 +V +A L K I V +I+V++G+ V G+ ++ Sbjct: 77 LGQVEIVATANGKLTHSGRSKE---IKPIENSIVKEIIVKEGESVRKGDVLL 125
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 32.1 bits (73), Expect = 0.004 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 9/47 (19%) Query: 98 LNPDIVLIHDAARPFVTPDLISRAIVAAGQTGAALPVVAINDTVKQI 144 L PD+V+ H PFV +L VA ++ ++++ I Sbjct: 472 LKPDLVITHSQLIPFVHHELTKGIAVAE---------ISFDESILSI 509
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 584 bits (1506), Expect = 0.0 Identities = 358/480 (74%), Positives = 409/480 (85%), Gaps = 4/480 (0%) Query: 1 MPAGSILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDLVITDVVMPDE 60 M +ILVADDD AIRTVLNQALSRAGY+VR+T NAATLWRW++ G+GDLV+TDVVMPDE Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 NAFDLLPRIKKMRPNLPVIVMSAQNTFMTAIRASEKGAYEYLPKPFDLKELIAIVGRALA 120 NAFDLLPRIKK RP+LPV+VMSAQNTFMTAI+ASEKGAY+YLPKPFDL ELI I+GRALA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 EPKERSSNQTDENEFDSIPLVGRSPAMQEIYRVLARLMQTDLTVMISGESGTGKELVARA 180 EPK R S D+++ D +PLVGRS AMQEIYRVLARLMQTDLT+MI+GESGTGKELVARA Sbjct: 121 EPKRRPSKLEDDSQ-DGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 181 LHDYGKRRNGPFVAVNMAAIPRDLIESELFGHERGAFTGANTRASGRFEQAEGGTLFLDE 240 LHDYGKRRNGPFVA+NMAAIPRDLIESELFGHE+GAFTGA TR++GRFEQAEGGTLFLDE Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239 Query: 241 IGDMPMEAQTRLLRVLQQGEYTTVGGRTPIKTDVRIVAASNKDLRILIQQGLFREDLFFR 300 IGDMPM+AQTRLLRVLQQGEYTTVGGRTPI++DVRIVAA+NKDL+ I QGLFREDL++R Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299 Query: 301 LNVVPLRLPPLREHIEDLPDLVRHFFALAEKDGLPAKKLDSAALERLKQHRWPGNVRELE 360 LNVVPLRLPPLR+ ED+PDLVRHF AEK+GL K+ D ALE +K H WPGNVRELE Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 361 NLARRLAALYPQDVITASVIDGELA---PPAVVSGGSVAHSVDNLGGAVEMYLSSHFSGF 417 NL RRL ALYPQDVIT +I+ EL P + + + ++ AVE + +F+ F Sbjct: 360 NLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASF 419 Query: 418 PNGVPPPGLYHRVLREIEVPLLTAALAATRGNQIRAADLLGLNRNTLRKKIRDLDIQVYR 477 + +PP GLY RVL E+E PL+ AAL ATRGNQI+AADLLGLNRNTLRKKIR+L + VYR Sbjct: 420 GDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYR 479
>PF06580#Sensor histidine kinase Length = 349 Score = 47.2 bits (112), Expect = 1e-07 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 25/152 (16%) Query: 555 IVRQVDDIRRMVDEFSRFARM-----PKPVIEGEDVADTIRQVVFLMRVGHPD-VDIEAE 608 I+ R M+ S R + D + + L + D + E + Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQ 245 Query: 609 IKDDPLRARFDRRLISQALTNIIKNATEAIEAVPPEELGKGKIEVVAARDGEDVVIDVID 668 I + + L+ + N IK+ + GKI + +D V ++V + Sbjct: 246 INPAIMDVQVPPMLVQTLVENGIKHGIAQLP-------QGGKILLKGTKDNGTVTLEVEN 298 Query: 669 NGIGLPKQSRSRLLEPYVTTREKGTGLGLAIV 700 G K ++ + TG GL V Sbjct: 299 TGSLALKNTK------------ESTGTGLQNV 318
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 421 bits (1084), Expect = e-147 Identities = 165/478 (34%), Positives = 263/478 (55%), Gaps = 36/478 (7%) Query: 5 ILIVDDEADIRDLVAGILEDEGFTTRTARDSDSALAEISNRRPNLIFLDIWLQGSKLDGL 64 IL+ DD+A IR ++ L G+ R ++ + I+ +L+ D+ + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD--ENAF 63 Query: 65 QLLEQIKKDHAEVPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRALETSR 124 LL +IKK ++PV+++S TA+ A ++GAYD++ KPF LI + RAL + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL--AE 121 Query: 125 LKREVRELKQQAPSASTLMGRSACMNQLRQTIERAAKANSRILIVGPSGAGKELAARTLH 184 KR +L+ + L+GRSA M ++ + + R + + ++I G SG GKEL AR LH Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181 Query: 185 NASGRTDGPFVVINAAAITPERMEVELFGVEP---NGEHPRKAGALEEAHGGTLFIDEIA 241 + R +GPFV IN AAI + +E ELFG E G R G E+A GGTLF+DEI Sbjct: 182 DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 242 DMPRETQNKILRVLVEQTFQRSGGTAKVNVDVRIVSSTARNLEEEIAEGRFREDLYHRLS 301 DMP + Q ++LRVL + + GG + DVRIV++T ++L++ I +G FREDLY+RL+ Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301 Query: 302 VVPIRVPPLSERREDIPELIEYFMEQISAATGLPKRQIGQDAMAVLQSHVWPGNVRQLRN 361 VVP+R+PPL +R EDIP+L+ +F++Q + GL ++ Q+A+ ++++H WPGNVR+L N Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 362 NVERVMILAGGGPDSVITADMLPQDVGSMVPTMPTGNNGEHIMGLPLR------------ 409 V R+ L P VIT +++ ++ S +P P L + Sbjct: 361 LVRRLTALY---PQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFA 417 Query: 410 -------------EAREVFERDYLIAQISRFSGNISRTAEFVGMERSALHRKLKALGV 454 E ++A ++ GN + A+ +G+ R+ L +K++ LGV Sbjct: 418 SFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 320 bits (821), Expect = e-110 Identities = 135/339 (39%), Positives = 207/339 (61%), Gaps = 25/339 (7%) Query: 30 LRIVPDDTHFDFTQFRRISFPISAVLSIAAITLFFTHGLNFGIDFKGGTLLEVRAHSGTA 89 L++VP+ T+FDF +++ +F + V+ IA++ L GLNFGIDFKGGT + + + Sbjct: 5 LKLVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTES-TTAI 63 Query: 90 DIPGMRETLGKLGLGDVQLQQFGGP------AEVLIRVAEQPGGDAAQ------QEAVQK 137 D+ R L L LGDV + + P +IR+ Q G A+ QE V K Sbjct: 64 DVGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNK 123 Query: 138 VRGALGN---SVDYRRVEVVGPRVSSELLAYGMLGLMLAILGILVYLWFRFEWQFALGAM 194 V AL ++ E VGP+VS EL+ + L+ A + I+ Y+W RFEWQFALGA+ Sbjct: 124 VETALTAVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAV 183 Query: 195 IANVHDIVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRYKKMPMP 254 +A VHD++LT+G ++ Q+ FDLT++AALLTI GYS+NDTVV++DR+RE L +YK MP+ Sbjct: 184 VALVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLR 243 Query: 255 QLLNESINSTLSRSIITHVTVTLALFALLLFGGHAIHSFTAVMMFGVVLVGTYTSIFIAA 314 ++N S+N TLSR+++T +T LAL +L++GG I F M++GV GTY+S+++A Sbjct: 244 DVMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVF-TGTYSSVYVAK 302 Query: 315 PILIYLGVGTHRMDEPDDKPAKPEPAEKLEKVEAVAALP 353 I++++G+ ++ K +P++K A P Sbjct: 303 NIVLFIGLDRNK--------EKKDPSDKFFSNGAQDGAP 333
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 83.4 bits (206), Expect = 1e-19 Identities = 31/185 (16%), Positives = 84/185 (45%), Gaps = 4/185 (2%) Query: 352 LTIIEERTVGPGLGQDSIEKGELAAYVGSILVIIFMLLTYRL-FGVFANLAVAVNVAMIF 410 L I +VGP + + + + +++++ ++ + + F + A +A+ +V + Sbjct: 135 LKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLTV 194 Query: 411 GVLSLLNATLTLPGIAGVVLTVGIAVDSNVLIYERIREELRA--GRNAISAIDAGFKRAL 468 G+ ++L L +A ++ G +++ V++++R+RE L ++ L Sbjct: 195 GLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNETL 254 Query: 469 STILDSNITTFIAAAVLFYIGTGPVRGFAVTLGIGIITTVFTA-FTVTRLIVATWVRWKR 527 S + + +TT +A + G +RGF + G+ T +++ + +++ + + Sbjct: 255 SRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIGLDRNK 314 Query: 528 PQTVP 532 + P Sbjct: 315 EKKDP 319
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 34.9 bits (80), Expect = 8e-04 Identities = 53/284 (18%), Positives = 86/284 (30%), Gaps = 81/284 (28%) Query: 1 MRNSMTCLSAVLFASCGTAHAADIARPPAADPIAALNWTGFYLGAHLG-AGFGTTKVDNP 59 M+ + ++ L A AA P + +Y GA LG + + T N Sbjct: 1 MKKTAIAIAVALAGFATVAQAA-----PKDNT--------WYTGAKLGWSQYHDTGFINN 47 Query: 60 YGPSIYGDTVRVPKALAGLQAGYNWQAPGTAWVLGVEADASALDADGTDTCLAYSGQFVS 119 GP + AG GY P + +G + + G+ AY Q V Sbjct: 48 NGP------THENQLGAGAFGGYQVN-PYVGFEMGYD-WLGRMPYKGSVENGAYKAQGVQ 99 Query: 120 ANCRVREHVLGTLTGRIGHAFGSQGRSLMYVKGGAAFLTSDLTMTTNAVDYLNRPAAELK 179 ++ + L +Y + G +D ++ + Sbjct: 100 LTAKLGYPITDDLD--------------IYTRLGGMVWRADTKSNVYGKNHDTGVSPVF- 144 Query: 180 ETRWGWTVGAGIEHALSSGWAVRAEYDY----ADFGTRGIDSPNGGFLQIPSNPNSLIDT 235 G+E+A++ A R EY + D T G Sbjct: 145 --------AGGVEYAITPEIATRLEYQWTNNIGDAHTIG--------------------- 175 Query: 236 LGAPTRARQDAHLIKLGLNYYFGRTGVTAESAALLPVKAPAARP 279 R D ++ LG++Y FG AA + APA P Sbjct: 176 ------TRPDNGMLSLGVSYRFG-----QGEAAPVVAPAPAPAP 208
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.013 Identities = 12/63 (19%), Positives = 18/63 (28%) Query: 280 AQSAALAAPPLAAPATAQPAAQPAVSAAPPVRMAVAAPADPVQKARMVAPTETPAAAEPA 339 + + +P T QP A+PA P V + ET + E Sbjct: 1123 PKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQP 1182 Query: 340 EAS 342 Sbjct: 1183 VTE 1185
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 39.0 bits (91), Expect = 1e-06 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 6/109 (5%) Query: 6 TTGSVFLVEDETMIRMMVVDMLEELGFSVAAETGEINEALMLAGTTEFDVAILDVNVNGK 65 T ++ + +D+ IR ++ L G+ V T + D+ + DV + + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 66 VISPVADVLKAR--NRPFIFATGYGTQGVPEGYRDRPALQ---KPFQIE 109 + +K + P + + T ++ A KPF + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.8 bits (69), Expect = 0.004 Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 136 SASGKTYWAMVIAGGYDKPKPKPDPKTKPAKDKAGKDASSKPKPTAPRD 184 +A+G W++V A PKP P P +P + + + P+P A R+ Sbjct: 557 AANGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRE 605
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 36.9 bits (85), Expect = 1e-04 Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 161 DKAEGAKAETGDRVTVSFKGT-IDGVAFDGGTGEDIPVVIGSGSFIPGFEDQLAGIGVGE 219 D GAK D VTV + GT IDG FD P IPG+ + L + G Sbjct: 134 DAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAGS 193 Query: 220 TRTIKVSFPANYASDTLAGKPAEFETTATKV 250 T + V Y ++ G ET K+ Sbjct: 194 TWEVFVPADLAYGPRSVGGPIGPNETLIFKI 224
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 266 bits (682), Expect = 8e-88 Identities = 146/359 (40%), Positives = 219/359 (61%), Gaps = 3/359 (0%) Query: 24 FIFVTILLDMLSVGMILPILPKLIESFSDNNTADAARIYGVFGTAWALMQFVASPVLGGL 83 I T+ LD + +G+I+P+LP L+ +N D YG+ +ALMQF +PVLG L Sbjct: 9 VILSTVALDAVGIGLIMPVLPGLLRDLVHSN--DVTAHYGILLALYALMQFACAPVLGAL 66 Query: 84 SDRFGRRPVILLSNLGLGLDYILMALAPTLSWLFIGRVISGITSASISTSFAYIADVTPA 143 SDRFGRRPV+L+S G +DY +MA AP L L+IGR+++GIT A+ + + AYIAD+T Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDG 126 Query: 144 EKRAAVFGKVGAAFGLGFIFGPAIGGLLGGIDPRLPFWVAAGLSLCNALYGLFVLPESLP 203 ++RA FG + A FG G + GP +GGL+GG P PF+ AA L+ N L G F+LPES Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHK 186 Query: 204 PERRSPFRWRSANPVGAVRLLGSNARLAAMALVEFCAEVAHVALPAIFVLYSTYRYGWDQ 263 ERR P R + NP+ + R +AA+ V F ++ A++V++ R+ WD Sbjct: 187 GERR-PLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDA 245 Query: 264 TTVGLALAFVGVCTAIVQGGLVGPAVKRLGEQRAQIIGYGGGALGFLIYALAPTGALFWI 323 TT+G++LA G+ ++ Q + GP RLGE+RA ++G G+++ A A G + + Sbjct: 246 TTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFP 305 Query: 324 GIPVMTLWGIAGPATSGMMTRLVSPDQQGQLQGAITSLKSIAELIGPFLFTLIFAYFIG 382 + ++ GI PA M++R V ++QGQLQG++ +L S+ ++GP LFT I+A I Sbjct: 306 IMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASIT 364
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.0 bits (85), Expect = 3e-05 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 4/104 (3%) Query: 67 LYRGSVEEQQRQ-QAVAVEPPPAEATPKRSRSRNNAAAVRPAPAPASNPNPDAEPAPEEE 125 LY VE++ + + P S NN R AP P P A P+ E Sbjct: 980 LYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAP-ATPSETTE 1038 Query: 126 GSTAAAPPAPKPAKQSRRRVTTPPADQP--AQSAQPEQSAAPSA 167 + K +++ + T A A+ A+ A Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Score = 34.3 bits (78), Expect = 2e-04 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%) Query: 69 RGSVEEQQRQQAVAVEPPPAEATPKRSRSRNNAAAVRPAPAPASNPNPDAEPAPEEEGST 128 + VE ++ Q+ V ++ +PK+ +S PA P + + + +T Sbjct: 1111 KAKVETEKTQEVPKVT---SQVSPKQEQSETVQPQAEPAREND--PTVNIKEPQSQTNTT 1165 Query: 129 AAAPPAPKPAKQSRRRVTTPPADQPAQSAQPEQSAAP 165 A +PAK++ V P + + P Sbjct: 1166 AD---TEQPAKETSSNVEQPVTESTTVNTGNSVVENP 1199 Score = 31.2 bits (70), Expect = 0.002 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 20/125 (16%) Query: 72 VEEQQRQQAVAVEPPPAEATPKRSRSRNNAAAVRPAPAPASNPNPDAEPAPE-EEGSTAA 130 V E +Q++ VE +AT +++R A + + N A+ E +E T Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 131 APPAPKPAKQSRRRVTT-------------------PPADQPAQSAQPEQSAAPSAFPAP 171 K+ + +V T QP E + Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 172 MPSGT 176 + T Sbjct: 1160 SQTNT 1164 Score = 28.9 bits (64), Expect = 0.013 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 13/95 (13%) Query: 82 AVEPPPAEATPKRS------RSRNNAAAVRPAPAPASNPNPDA-EPAPEEEGSTAAAPPA 134 A PPPA ATP + S+ + V A+ E A E + + A Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 135 PKPAKQ------SRRRVTTPPADQPAQSAQPEQSA 163 + A+ ++ T A + ++ Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETE 1117 Score = 28.1 bits (62), Expect = 0.022 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 6/104 (5%) Query: 73 EEQQRQQAVAVEPPPAEATPKRSRSRNNAAAVRPAPAPASNPNPDAEPAPEEEGSTAAAP 132 E ++ Q E E K +++ + P S +P E + + A Sbjct: 1091 ETKETQTTETKETATVE---KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQ---PQAE 1144 Query: 133 PAPKPAKQSRRRVTTPPADQPAQSAQPEQSAAPSAFPAPMPSGT 176 PA + + + A + QP + + + S T Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 30.9 bits (70), Expect = 0.008 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 332 TSADDIIQAVAPIMDRPVELPGR-EPEHPAPASEPDASHRGRIVNLLGPSPIGIDDLIRL 390 T DDI +A+ + D + E PA+ + R+ N+ SP+ + D I+ Sbjct: 218 TYIDDIAEAIIRLQDVIPHADTQWTVETGTPAA---SIAPYRVYNIGNSSPVELMDYIQA 274
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.4 bits (68), Expect = 0.035 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Query: 815 NDKTQDTITLAEAIALIDERAAKGGGGKAKKKAPAKKAAASGEAKPKKAAAKKTKPKAET 874 +DK Q ITL D + GGGGK K+ +++A+ A K + A+ K +AE Sbjct: 15 DDKGQVIITLLNGTP--DGSGSGGGGGKGGSKS---ESSAAIHATAKWSTAQLKKTQAEQ 69 Query: 875 AAASKARAPVTAK 887 AA +KA A AK Sbjct: 70 AARAKAAAEAQAK 82
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 25.0 bits (54), Expect = 0.013 Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 17 TGFYYVTKKNSRTMTDKMTKKKYDPVARKHVEF 49 + Y T+K + +T T +KY +A K V+F Sbjct: 229 SNSYPWTQKLNLHLTITATGQKYRILASKIVDF 261
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 5e-21 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 3/151 (1%) Query: 3 ARILVVDDIPANVRLLEARLSAEYFDVVTASNGAQALEICARAECDIVLLDVMMPDMDGF 62 A ILV DD A +L LS +DV SN A A + D+V+ DV+MPD + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVS-DVVLIARVRSLTR 121 ++ R+K +PV++++A ++ ++ E GA D+L KP ++ R+L Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 122 LKMMTDELRMRAITSLEIGMQAPEREAVSDQ 152 K +L + + + ++ + + Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRV 152 Score = 56.0 bits (135), Expect = 2e-10 Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 155 GGRILLVDDRPSSYERLAPLLAAE-HDIDVEANPSEALFHAAEGNYDLLIVSLGLEDFDG 213 G IL+ DD + L L+ +D+ + +N + A G+ DL++ + + D + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 214 LRLCSQARSLERTRHVPILAIADAENNARLLRGLEIGVNDYLLRPVDKNELLARARTQIR 273 L + + + +P+L ++ ++ E G DYL +P D EL+ + Sbjct: 63 FDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 274 RRR 276 + Sbjct: 121 EPK 123
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.3 bits (167), Expect = 9e-17 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 4/116 (3%) Query: 4 TVLIVEDNELNMKLFRDLLEAHGYQTAGTSNGYEALDLVRKLHPDLILMDIQLPQVSGLD 63 T+L+ +D+ + L GY TSN + DL++ D+ +P + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 VTRWIKDDPELRHIPVVAVTAFAMKGDE-ERIREGGCEAYLSKPISVGKFIETVRR 118 + IK +PV+ ++A + +G + YL KP + + I + R Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYD-YLPKPFDLTELIGIIGR 117
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 36.4 bits (84), Expect = 9e-07 Identities = 19/57 (33%), Positives = 35/57 (61%) Query: 6 FKFLQEVRSETAKVTWPSRREVTITTIMVFVMVALASIFFFVADQVIRVLITFVLGV 62 F +E R+E KV WP+R+E TT++V + A+ S+ + D ++ L++F+ G+ Sbjct: 69 VAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGL 125
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 85.3 bits (211), Expect = 4e-20 Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 19/155 (12%) Query: 14 NIGTIGHVDHGKTSLT-------AAITKVLAETGGATFTAYDQIDKAPEEKARGITISTA 66 NIG + HVD GKT+LT AIT++ + G T T D E+ RGITI T Sbjct: 5 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRT-----DNTLLERQRGITIQTG 59 Query: 67 HVEYETSNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV 126 ++ N +D PGH D++ + + +DGAIL++SA DG QTR R++ Sbjct: 60 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 119 Query: 127 GVPALVVFLNKCDM--VDDPELLELVEMEVRELLS 159 G+P + F+NK D +D L V +++E LS Sbjct: 120 GIPT-IFFINKIDQNGID----LSTVYQDIKEKLS 149
>PF06872#EspG protein Length = 398 Score = 32.0 bits (72), Expect = 0.005 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 13/102 (12%) Query: 107 HLQLDDPLQKFIP---EFENTNVGVVENGKLDLVPLVRPITIQDLLRHTSGITYDHVS-- 161 H DPL P F +T+ G+ N KL L + P Q LLR+T G+ + S Sbjct: 186 HNNQTDPLSGLTPFSTVFMDTSRGL-GNSKLSLNGVDIPADAQKLLRNTLGLKDTNSSPD 244 Query: 162 ----DGPIQKMYRESRVRSRKITNEEHASLIAAMPLVCQPGA 199 I + Y E V+ TNE+ A+++ +CQP A Sbjct: 245 LNVIRNGIPRHYAEQIVKESSSTNEQKAAVVD---FLCQPEA 283
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 119 bits (298), Expect = 1e-34 Identities = 74/257 (28%), Positives = 120/257 (46%), Gaps = 11/257 (4%) Query: 6 LTGKVAVITGSSRGIGRAIAERMAEHGAKVVISSRKQDACDEVAKAINNQRGAGTALAIA 65 + GK+A ITG+++GIG A+A +A GA + + ++V ++ + A A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE--ARHAEAFP 63 Query: 66 ANISSKTDLERLANEATAAFGRIDALVCNAASNPYYGPQANISDDQFRKILDNNIVANHW 125 A++ ++ + G ID LV A G ++SD+++ N Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVN-VAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 126 LISVVAPQMIARKDGSITIVSSIGGLKGSTVIGAYCISKAADMQLARNLACEYGPHNIRV 185 V+ M+ R+ GSI V S T + AY SKAA + + L E +NIR Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 186 NCIAPGLIKTDFARALWEN----PETLKASTAR----SPLQRIGEPDEIAGAAVFLASAA 237 N ++PG +TD +LW + + +K S PL+++ +P +IA A +FL S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 238 GSFTTGQTLVIDGGATI 254 T L +DGGAT+ Sbjct: 243 AGHITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 110 bits (277), Expect = 2e-31 Identities = 73/254 (28%), Positives = 110/254 (43%), Gaps = 7/254 (2%) Query: 4 LAGKSVIITGAGSGIGRAASLLFTQEGARLIAVDRTDGVHETVEQVRKAGG-TAEAVTAD 62 + GK ITGA GIG A + +GA + AVD E V KA AEA AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 AGSEDDVKAFIAKAIASYGKLDAIWANAGVSGGLVPLADQTVEHWQDILRINLIGPFLAI 122 + A+ G +D + AGV + + E W+ +N G F A Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLR-PGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 123 KYATPHMIKQGHGAILCTASVAGLKSGASGHPYAASKAGVISLVQTTAYSLSGTGVRINA 182 + + +M+ + G+I+ S S YA+SKA + + L+ +R N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 183 VCPGLIETGMTKPVF---DGA--RARGTDHKIGQLNPLKRAGQPHELATMGLFLLSDEAS 237 V PG ET M ++ +GA +G+ PLK+ +P ++A LFL+S +A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 238 YVHGQAFPVDGGLT 251 ++ VDGG T Sbjct: 245 HITMHNLCVDGGAT 258
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.4 bits (146), Expect = 2e-13 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Query: 4 DTTRTAILRAAERLYAERGFSDVTLRDIVAAAEVNLAAVNYHFGSKDELITELFVTRSIA 63 TR IL A RL++++G S +L +I AA V A+ +HF K +L +E++ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW-----E 64 Query: 64 TNRERLNQLKAAEAAGGGRAPVEAVLRALVGPTLRGCLGPDSER 107 + + +L+ A P +VLR ++ L + + R Sbjct: 65 LSESNIGELELEYQAKFPGDP-LSVLREILIHVLESTVTEERRR 107
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 67.5 bits (165), Expect = 7e-15 Identities = 55/208 (26%), Positives = 84/208 (40%), Gaps = 18/208 (8%) Query: 1 MHILILGAAGMVGRKLVDRLLADGH--LGDRQITRITLHDVV--AAAQPLDATIPVEIVT 56 M L+ GAAG +G + RLL GH +G + +DV A L A + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLN--DYYDVSLKQARLELLAQPGFQFHK 58 Query: 57 SDFADAASAAPLLAS-RPQIIFHLAAIVSGEAEADFDKGY-RINLDGTRHLLEAIRAVGD 114 D AD L AS + +F ++ + Y NL G ++LE R Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK- 117 Query: 115 GYHPRLVFTSSIAVFGA----PFPEKIGDEFLSTPLTSYGTQKAICELLIADYTRRGFLD 170 L++ SS +V+G PF D+ + P++ Y K EL+ Y+ L Sbjct: 118 --IQHLLYASSSSVYGLNRKMPFST---DDSVDHPVSLYAATKKANELMAHTYSHLYGLP 172 Query: 171 GIGIRLPTICVRPGRPNKAASGFFSNII 198 G+R T+ GRP+ A F ++ Sbjct: 173 ATGLRFFTVYGPWGRPDMALFKFTKAML 200
>PF05272#Virulence-associated E family protein Length = 892 Score = 37.4 bits (86), Expect = 9e-05 Identities = 15/33 (45%), Positives = 18/33 (54%) Query: 32 VVLVGPSGCGKSTLLRMLAGLEKITSGTISIGD 64 VVL G G GKSTL+ L GL+ + IG Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGT 631
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (268), Expect = 3e-30 Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 18/256 (7%) Query: 5 LKGKRAFVTAAAAGIGRASAIAFAREGAEVFATDIDEAGL----ASLAKQG-IGEAAKLD 59 ++GK AF+T AA GIG A A A +GA + A D + L +SL + EA D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 60 VRDSAAVEAI----AKQAGRVDILLNAAGFVHHGTVLDCSDADWDFSFDLNVKSMHRTIR 115 VRDSAA++ I ++ G +DIL+N AG + G + SD +W+ +F +N + R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 116 AFLPGMLAAGHGSIVNI-SSAAGVYKAAPNRYVYGATKAAVAALTRAIAADFITKGIRCN 174 + M+ GSIV + S+ AGV + + Y ++KAA T+ + + IRCN Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMA--AYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 175 AICPGTIETPSMLGRAAAAGPQGR------EMFVSRQPMGRLGTAEEIAALAVYLASDES 228 + PG+ ET A + E F + P+ +L +IA ++L S ++ Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 229 AFTTGVAHIIDGGWTL 244 T +DGG TL Sbjct: 244 GHITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 103 bits (257), Expect = 1e-28 Identities = 77/257 (29%), Positives = 112/257 (43%), Gaps = 13/257 (5%) Query: 1 MNSIDLNRRCAIVTGGAQGFGRAIAERFAASGARVAIWDHDIALAETTAKEIGDDV--VS 58 MN+ + + A +TG AQG G A+A A+ GA +A D++ E + + Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 59 AFQVDVTDPAAVDAARDATMAAFGKIDILVNNAGIAGINKTLWDTDYEEWRKVLRINLDG 118 AF DV D AA+D G IDILVN AG+ +D EEW +N G Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSD-EEWEATFSVNSTG 119 Query: 119 PFICCKSIVPAMIAHKYGRIVNIASIAGKEGNPNAAHYSASKAGLIALTKSLGKELAAYD 178 F +S+ M+ + G IV + S + A Y++SKA + TK LG ELA Y+ Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 179 IAVNAVTPAAARTAIFDQM------TQQHIDFMLSK----IPKGRFVLVEELAAMVAWLA 228 I N V+P + T + + +Q I L IP + ++A V +L Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 229 SEDCAFSTGAVFDISGG 245 S T + GG Sbjct: 240 SGQAGHITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.5 bits (154), Expect = 7e-15 Identities = 22/114 (19%), Positives = 45/114 (39%) Query: 7 RKKQPDLIRRTLLECAAKLAIERGVAGITIQAVADAAGVTKGGLFHHFPNKQALVEGVFV 66 K++ R+ +L+ A +L ++GV+ ++ +A AAGVT+G ++ HF +K L ++ Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 67 DLLHQLDSAIDARMQEDEEPYGSFTRAYVEVTFEEFELGKTGPAAAITLSMLAE 120 + + S R + E + + E Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCE 118
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.7 bits (116), Expect = 2e-08 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 23/214 (10%) Query: 97 RINAAVYQAEVESRAAALDRAEATRVQAARQSERTQLLLDRQATSTAQNDVSVAALKQAE 156 + + + L ++ Q + + + T +N++ L+Q Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY-QLVTQLFKNEIL-DKLRQTT 308 Query: 157 ADVASAKAQLDRARINLDFATVRAPIAGRIGRALV-TEGALVGQNEPTHLATIQQIDPIY 215 ++ +L + + +RAP++ ++ + V TEG +V E + + + D + Sbjct: 309 DNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETL-MVIVPEDDTLE 367 Query: 216 VDFTQSVSDPGFL-------------PSRANSVSSAEVRLIRADGSIDDNVGQLLFSDVS 262 V D GF+ P +V+ I D D +G + +S Sbjct: 368 VTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIIS 427 Query: 263 VDPGTAQVTLRAKFSNPKGSLLPGTYVRVRVATG 296 ++ + L G V + TG Sbjct: 428 IEENCLSTGNKNIP------LSSGMAVTAEIKTG 455 Score = 40.6 bits (95), Expect = 9e-06 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 8/124 (6%) Query: 59 PGRLA-STRVSEVRAQVSGIVLERAFVEGSDVAQGDTLFRINAAVYQAEVESRAAALD-- 115 G+L S R E++ + IV E EG V +GD L ++ A +A+ ++L Sbjct: 87 NGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146 Query: 116 RAEATRVQAARQS-ERTQL----LLDRQATSTAQNDVSVAALKQAEADVASAKAQLDRAR 170 R E TR Q +S E +L L D + + + ++ + Q + Sbjct: 147 RLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206 Query: 171 INLD 174 +NLD Sbjct: 207 LNLD 210
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1069 bits (2766), Expect = 0.0 Identities = 520/1032 (50%), Positives = 710/1032 (68%), Gaps = 6/1032 (0%) Query: 1 MTRFFIDRPIFAWAISLFIMLAGGISLVSLPISQYPDVAPVTVSITANYPGATPERLYDG 60 M FFI RPIFAW +++ +M+AG ++++ LP++QYP +AP VS++ANYPGA + + D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTRIIEEELNGIPGMMYFESTNDAGGAAQITVSFGPGYDPSKATIAVQNRIKRIEARLPR 120 VT++IE+ +NGI +MY ST+D+ G+ IT++F G DP A + VQN+++ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 AVVQQGVLVEEASTAFLMFVTLSATGAGTTEIELGDIAARRVTGELRRVPGVGRATLYSS 180 V QQG+ VE++S+++LM + GTT+ ++ D A V L R+ GVG L+ + Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 EKAMRIWIDPDKLIGLNLTAGDVTSAVEGQNAQIASGMIGAQPAKKGQRIAANVLVKGQL 240 + AMRIW+D D L LT DV + ++ QN QIA+G +G PA GQ++ A+++ + + Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 TTVKEFEEIVLRANPDGSIVRLRDVAEVELGGQSYLQQTRQDGKPSAGIGIQLAPGANAL 300 +EF ++ LR N DGS+VRL+DVA VELGG++Y R +GKP+AG+GI+LA GANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 ATATGVRAKIAELQKTLT-NVKLQVPYDTTPFVQVSIKQVLMTLLEAMVLVFAVMFLFLQ 359 TA ++AK+AELQ +K+ PYDTTPFVQ+SI +V+ TL EA++LVF VM+LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NIRYTIIPTIVVPIALLGTCAVMLMLGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 419 N+R T+IPTI VP+ LLGT A++ G+SIN LTMFGMVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 KDEGLPPREATFKAMSQISGAVVGITVVLISVFVPLAFFPGSVGVIYRQFSVAMATSIAF 479 ++ LPP+EAT K+MSQI GA+VGI +VL +VF+P+AFF GS G IYRQFS+ + +++A Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCATLLKPVDKAHGHSQRGFFGLFNRFFDATSRRYVGGVSSVVRRPVRS 539 S +AL LTPALCATLLKPV H ++ GFFG FN FD + Y V ++ R Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 540 LLVYSVLIAAMVFGFNRLPSGFLPGEDQGYLIVDVQTPPESSTERTLDIIKQIEAHF--S 597 LL+Y++++A MV F RLPS FLP EDQG + +Q P ++ ERT ++ Q+ ++ + Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 598 SERAVDSYTTVGGYGFSGQGQNTAIAFINLKDWSER-GANDSAQSIGDRANAFLSTLPDA 656 + V+S TV G+ FSGQ QN +AF++LK W ER G +SA+++ RA L + D Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 IAISLAPPPIESLGNSAGFTFRLQDKEQKGYAALAAARDQLLNAATQSPV-LQGVYVEGL 715 I P I LG + GF F L D+ G+ AL AR+QLL A Q P L V GL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 PTAPQIEMLIDREKANALGVTFAAINQALSTSLGSTYVNDFPNNARMQRVIVQADANRRM 775 Q ++ +D+EKA ALGV+ + INQ +ST+LG TYVNDF + R++++ VQADA RM Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 TAEDILQLSVRNSKNQMVPLQSVAQVKWSMGPSQVVGFNGFPSIKFSGSAAPGYASGDAM 835 ED+ +L VR++ +MVP + W G ++ +NG PS++ G AAPG +SGDAM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 AEMERLAAELPSGFDYAWSGQSLQEKLSGSQAIYLLVLSLLCVFLCLAALYESWSIPFAV 895 A ME LA++LP+G Y W+G S QE+LSG+QA L+ +S + VFLCLAALYESWSIP +V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 LLVVPTGVIGSVFAMLLRDMPNDIYFKVGLITVIGLSAKNAILIIEIAKDL-VAQGVAFG 954 +LVVP G++G + A L + ND+YF VGL+T IGLSAKNAILI+E AKDL +G Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 EAAIEACRRRFRPILMTSLAFILGVLPLAIATGAGSNSQRAIGTGVFGGMLTATALAIFF 1014 EA + A R R RPILMTSLAFILGVLPLAI+ GAGS +Q A+G GV GGM++AT LAIFF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1015 TPVLYVLITSTF 1026 PV +V+I F Sbjct: 1021 VPVFFVVIRRCF 1032 Score = 88.0 bits (218), Expect = 1e-19 Identities = 79/524 (15%), Positives = 183/524 (34%), Gaps = 39/524 (7%) Query: 533 VRRPVRSLLVYSVLIAAMVFGFNRLPSGFLPGEDQGYLIVDVQTPPESSTERTLDIIKQI 592 +RRP+ + ++ +L+ A +LP P + V P + + + I Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVI 65 Query: 593 EAHFSSERAVDSYTTVGGYGFSGQGQNTAIAFINLKDWSERGANDSAQSIGDRANAFLST 652 E + + + ++ S I L S + + + ++ Sbjct: 66 EQNMNGIDNLMYMSSTSDSAGSVT--------ITLTFQSGTDPDIAQVQVQNKLQLATPL 117 Query: 653 LPDAIAISLAPPPIESLGNSAGFTFRL--------QDKEQKGYAALAAARDQLLNAATQS 704 LP + I +S+ + ++ + +D L Sbjct: 118 LPQEVQ----QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRL---- 169 Query: 705 PVLQGVYVEGLPTAPQIEMLIDREKANALGVTFAAINQALSTS---LGSTYVNDFPNNAR 761 + V + G + + +D + N +T + L + + + P Sbjct: 170 NGVGDVQLFGAQY--AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 762 MQRVIVQADANRRM-TAEDILQLSVRNSKN-QMVPLQSVAQVKWSMGPSQVVG-FNGFPS 818 Q++ A R E+ ++++R + + +V L+ VA+V+ V+ NG P+ Sbjct: 228 -QQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPA 286 Query: 819 IKFSGSAAPG---YASGDA-MAEMERLAAELPSGFDYAW-SGQSLQEKLSGSQAIYLLVL 873 A G + A A++ L P G + + +LS + + L Sbjct: 287 AGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFE 346 Query: 874 SLLCVFLCLAALYESWSIPFAVLLVVPTGVIGSVFAMLLRDMPNDIYFKVGLITVIGLSA 933 +++ VFL + ++ + VP ++G+ + + G++ IGL Sbjct: 347 AIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLV 406 Query: 934 KNAILIIE-IAKDLVAQGVAFGEAAIEACRRRFRPILMTSLAFILGVLPLAIATGAGSNS 992 +AI+++E + + ++ + EA ++ + ++ ++ +P+A G+ Sbjct: 407 DDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAI 466 Query: 993 QRAIGTGVFGGMLTATALAIFFTPVLYVLITSTFGKRKGKSSGG 1036 R + M + +A+ TP L + ++ GG Sbjct: 467 YRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGG 510
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 58.8 bits (142), Expect = 2e-12 Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 6/187 (3%) Query: 62 HEASDLPPGPE-TDASAASPALNEQKAEVKQSDLPKDTPQQTEEADRIVTTEQPK-KPDE 119 H+ +LP + + +PA E V+ P P+ E E P Sbjct: 38 HQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP 97 Query: 120 EQKEKAVVRQQASTESVAAEATAMPSNETAKEGPRSVAPAQGVGQAAQRIR--ATWQKEL 177 + K K + E + + S + + A A + + Sbjct: 98 KPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGP 157 Query: 178 VAYLDKHKRYPKEGAQKNV--KIVVSFELDRLGHVLSTRIVEGSGDAAFDQAALDMVRRS 235 A +YP + ++ V F++ G V + +I+ F++ + +RR Sbjct: 158 RALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRW 217 Query: 236 DPVPAPP 242 P P Sbjct: 218 RYEPGKP 224
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 31.7 bits (72), Expect = 0.006 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 26/121 (21%) Query: 296 MGSTFKTLTLAMAL---DSGKATLNTLYDARGALRYGKFAIHDTHP-----LGRPITLAE 347 M STFK + L D+G L + Y + + D P L +T+ E Sbjct: 64 MMSTFKVVLCGAVLARVDAGDEQLER------KIHYRQQDLVDYSPVSEKHLADGMTVGE 117 Query: 348 V----FTFSSNVGAARIAIAQ--GVEAHKAFLKKVG----QLDRLRTELPESASPIVPKR 397 + T S N AA + +A G AFL+++G +LDR TEL A P + Sbjct: 118 LCAAAITMSDNS-AANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETEL-NEALPGDARD 175 Query: 398 W 398 Sbjct: 176 T 176
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 106 bits (266), Expect = 7e-27 Identities = 78/396 (19%), Positives = 149/396 (37%), Gaps = 17/396 (4%) Query: 36 FMSILDIQIVSASLSEIQAGLSASSSEVSWVQTSYLIAEVIAIPLSGFLSRALGTRNLFA 95 F S+L+ +++ SL +I + + +WV T++++ I + G LS LG + L Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 96 ISAAGFTFASLMCGFTSTITEMIVW-RAIQGFLGAGMIPTVFASAYTVFPRSKFNLVGPI 154 F S++ + +++ R IQG A V P+ + Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 155 IGLVATLAPTIGPTVGGYITDLMSWHWLFFINIVPGIGITIGVLALVDFDEPHYELLDHF 214 IG + + +GP +GG I + W +L I ++ I V L+ + + HF Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMI----TIITVPFLMKLLKKEVRIKGHF 199 Query: 215 DWWGLGFMAGFLGSLEYVLEEGPRNDWFNDESILIFAIVCVVSAVAFFWRVLTAREPIVD 274 D G+ M+ + F + F IV V+S + F + +P VD Sbjct: 200 DIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 275 IRAFTNRNFAFGCMFSFCVGIGLYGLTYIYPRYLAEVRGYSALMIGET-MFVSGIAMFLT 333 N F G + + + G + P + +V S IG +F +++ + Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 334 APLVGRLMALIDMRILIAIGLLLFAGGTWQMTWITRDYDFYELLWPQIFRGVGMMMAMVP 393 + G L+ ++ IG+ + + + + + +F G+ Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVSFLTAS-FLLETTSWFMTIIIVFVLGGLSFTKTV 368 Query: 394 VNTISLGTLPAARVKNASGLFNLTRNLGGALGLALI 429 ++TI +L L N T L G+A++ Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIV 404
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 119 bits (300), Expect = 8e-32 Identities = 66/446 (14%), Positives = 130/446 (29%), Gaps = 97/446 (21%) Query: 49 KLADPPEPELDDEAVAPVAKPAAAARKPGKKRLV---LIGVGIAALAAAAYYGIDYMLV- 104 K D P E D+ P + RLV ++G + A + ++ + Sbjct: 27 KQLDTPVREKDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATA 86 Query: 105 -GRFMVSTDDAYVRANNTTLGARVAGHVAAILPRDNAVVKAGDVVFKIDDGDYKIAVDAA 163 G+ S + + V I+ ++ V+ GDV+ K+ + Sbjct: 87 NGKLTHSG-------RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKT 139 Query: 164 RAKIATQQATIERIG--------------------------------------------- 178 ++ + + R Sbjct: 140 QSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Query: 179 RQVSALQSAVEQAQAQRDSAEAA--AKRAALDFDRQQ-----ALSTKGFASRATFEVSQA 231 Q + +++ +A+R + A ++ + +L K ++ + Sbjct: 200 NQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQEN 259 Query: 232 GRDQGVASVAAAKAAFDAARDNVEVTKAQQ---------------NEARAQLVELQSSLA 276 + V + K+ + + K + + + L LA Sbjct: 260 KYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELA 319 Query: 277 KAERDLDFTNVRAPVEGVFSNRLVNT-GDFIQAGQRLANIVPLDGVY-VDANFKETQLGR 334 K E + +RAPV V+T G + + L IVP D V A + +G Sbjct: 320 KNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGF 379 Query: 335 LKPGQKVDISVDAYSSRK---IEGTVDSLAPAAGQVFTLLPPDNATGNFTKIVQRVPVRI 391 + GQ I V+A+ + + G V ++ D +V V + I Sbjct: 380 INVGQNAIIKVEAFPYTRYGYLVGKVKNIN-----------LDAIEDQRLGLVFNVIISI 428 Query: 392 RVPAEVAREN--LLRAGMSVYVRVDT 415 L +GM+V + T Sbjct: 429 EENCLSTGNKNIPLSSGMAVTAEIKT 454
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.1 bits (166), Expect = 3e-16 Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 21/222 (9%) Query: 7 ATSVQGHDEDCAKRRQIIKGARTVFLEQGFDGASMGEIARAAGVSKGTLYVYFTDKNSLF 66 A + ++ R+ I+ A +F +QG S+GEIA+AAGV++G +Y +F DK+ LF Sbjct: 2 ARKTKQEAQE--TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF 59 Query: 67 CEIIEQESIAQGMLSFDFMPERDIETTLKVFGTAYIKLLCNP-RGASAIRTVMAIAERMP 125 EI E G L ++ + L V I +L + + I + Sbjct: 60 SEIWELSESNIGELELEYQ-AKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCE 118 Query: 126 DIGQR-YYERVIAN----SLGRFARYLDQQVKSGTLVIDNCDLAAAQFTKLCQATLFLPF 180 +G+ ++ N S R + L +++ L D A A + + Sbjct: 119 FVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPAD-LMTRRA-------AIIMRGY 170 Query: 181 IFQMTET----PSSERIAEVVDSATRMFLAAYRAKPNDGRPS 218 I + E P S + + + L Y P P+ Sbjct: 171 ISGLMENWLFAPQSFDLKKEARDYVAILLEMYLLCPTLRNPA 212
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 0.009 Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 15/156 (9%) Query: 235 IGVVNKNGAGTLMLSGAN-TYSGATRILNGTLQTSANNVLSSASA--------LTISAGA 285 V+NK+ AG+L+ S + ++S + T + NV + +T Sbjct: 331 KDVLNKDSAGSLIGSKTDYSWSSNGKTSTITGGEKSLNVDLADGKDKPNHGKSVTFEGSG 390 Query: 286 TLELGNT-QQTVASLAGAGTINVGASSNGFTFGADNSSTSFSGTVTGGFM-----RFYKE 339 TL L N Q L G V +S+ T+ S + TVT R K Sbjct: 391 TLTLNNNIDQGAGGLFFEGDYEVKGTSDNTTWKGAGVSVAEGKTVTWKVHNPQYDRLAKI 450 Query: 340 GTGTFSFSGTGPTSGAMQVDGGTLALAGAADFSGAS 375 G GT GTG G+++V GT+ L + SG Sbjct: 451 GKGTLIVEGTGDNKGSLKVGDGTVILKQQTNGSGQH 486
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.5 bits (71), Expect = 0.001 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 123 SGAGRWLMNRALQAAWSHPIDRLWLHTCTFDHPKALAFYQRAGF 166 G G L+++A++ A + L L T + A FY + F Sbjct: 104 KGVGTALLHKAIEWAKENHFCGLMLETQDINIS-ACHFYAKHHF 146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.5 bits (183), Expect = 2e-17 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 7 RGDIFIIDRDRRLRALLSTALLRSGYRAVCFADDHALLKTARAQRPACILV----EEIAA 62 I + D D +R +L+ AL R+GY ++ L + A ++ + A Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 63 WSVLQRMHTADYLVPIICTSEAGSIEVAVRAMKGGAVDFIEKPFIVDDVVRRIGEAVATD 122 + +L R+ A +P++ S + A++A + GA D++ KPF + +++ IG A+A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 123 SKR 125 +R Sbjct: 123 KRR 125
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.4 bits (63), Expect = 0.039 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 5/36 (13%) Query: 101 REQLVSTALRLLQEAGASGAGMACDDTRELAARAGL 136 R+ ++ ALRL + G S + E+A AG+ Sbjct: 13 RQHILDVALRLFSQQGVSSTSL-----GEIAKAAGV 43
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 131 bits (331), Expect = 2e-39 Identities = 76/258 (29%), Positives = 117/258 (45%), Gaps = 9/258 (3%) Query: 4 NPFDLTGKVAVITGSSRGIGRASAELLAKLGARVVISSRKAEACEEVAEGIRKEGGDAHV 63 N + GK+A ITG+++GIG A A LA GA + E E+V ++ E A Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 64 IACNISRRAEVEALIEGANAKYGKIDILVCNAAVNPYYGPLLDIPDEAFDKIMNSNVKSN 123 ++ A ++ + + G IDILV A V G + + DE ++ + N Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 124 LWLCALTMPQMAARGGGSVVIISSIGGLRGSTVIGAYGISKAADFALCRSLAGEWGERGV 183 M R GS+V + S T + AY SKAA + L E E + Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 184 RVNCVAPGLVKTDFARALWEDEAVLKRRTAGT--------PLRRIGEPHEIAGAVAYLGS 235 R N V+PG +TD +LW DE ++ G+ PL+++ +P +IA AV +L S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 236 DASTFMTGQTIVIDGGVT 253 + +T + +DGG T Sbjct: 241 GQAGHITMHNLCVDGGAT 258
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 80.5 bits (198), Expect = 4e-20 Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 14/187 (7%) Query: 8 VLITGGGSGLGAATAQAMAAKGAKVAVLDMNKDNAEKVAAEIGGVACVG-----DVSQEA 62 ITG G+G A A+ +A++GA +A +D N + EKV + + A DV A Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 63 PVKEAIAKAEAAHGIVRVLVNCAGIGGAVKTVGKQGAYPLDHFSRIINVNLIGSFNCIRL 122 + E A+ E G + +LVN AG+ G + + + +VN G FN R Sbjct: 71 AIDEITARIEREMGPIDILVNVAGV----LRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 123 VAERMQSAPTIGEERGVCINTASVAAFDGQIGQAAYSASKGGIVGMTLPVARDLASLNIR 182 V++ M G + S A + AAY++SK V T + +LA NIR Sbjct: 127 VSKYMMD-----RRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 183 VMTIAPG 189 ++PG Sbjct: 182 CNIVSPG 188
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.2 bits (135), Expect = 8e-12 Identities = 26/177 (14%), Positives = 55/177 (31%), Gaps = 12/177 (6%) Query: 9 LATRIPAVKNSTADKLLVAAGELMIERNSVEISLSDIAHKSGVNAALVKYHFGNKDGLLL 68 +A + T +L A L ++ SL +IA +GV + +HF +K L Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 69 ALLARD----AANEMTNLDYLLAQPLAPSIKMKLHIAGIIKAYYQFPYMNRLIHYLLHGQ 124 + E+ PL+ ++ +H ++++ L+ + H Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIH---VLESTVTEERRRLLMEIIFHKC 117 Query: 125 NRDAA----DEVTKFFVGPLLDFHRRLLAEGVAAGEFR-NVDPVFFYTTLIGACDHL 176 + + D + L + A ++ + G L Sbjct: 118 EFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 47.4 bits (112), Expect = 5e-08 Identities = 53/239 (22%), Positives = 82/239 (34%), Gaps = 24/239 (10%) Query: 50 DVPEQRIEVEVVTADEAPPPP-----LPEPKPETKPALDLPEI-KPESETKPASPPPEPA 103 + ++ VE D E K K E+ + SETK E Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT-ETK 1101 Query: 104 APQPPLKPEPVKPEPKQQKAEAPKPEFKPDLKPEPAKPEAAPPQPTPAASPAPT-SAPQA 162 K E K E ++ E PK + P+ + E PQ PA PT + + Sbjct: 1102 ETATVEKEEKAKVE-TEKTQEVPK--VTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 163 QQPAPFPPAIPQ---------EPDITVRYSVALG--LPADPTFDAPAETVADISAEAVAA 211 Q Q E +T +V G + +P PA T +++E+ Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK 1218 Query: 212 LRQR-LKSCAALPASV-APSDNVKIVLRVALQPDGRLAQEPVLIEASASAKGPALMKGA 268 + R +S ++P +V + + VAL VL +A A A+ AL G Sbjct: 1219 PKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGK 1277 Score = 41.6 bits (97), Expect = 3e-06 Identities = 26/168 (15%), Positives = 50/168 (29%), Gaps = 8/168 (4%) Query: 49 ADVPEQRIEVEVVTADEAPPPPLPEPKPETKPALDLPEIKPESETKPASPPPEPAAPQPP 108 +V + E + E E + + K + + P+ ++ + + QP Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142 Query: 109 LKPEPVKPEPKQQKAEAPKPEFKPDLKPEPAK------PEAAPPQPTPAASPAPTSAPQA 162 +P + +P E +PAK + T + P+ Sbjct: 1143 AEPAR-ENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPEN 1201 Query: 163 QQPAPFPPAIPQEPDITVRYSVALGLPADPTFDAPAETVADISAEAVA 210 PA P + E + + + P PA T + VA Sbjct: 1202 TTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA-TTSSNDRSTVA 1248 Score = 37.0 bits (85), Expect = 1e-04 Identities = 31/188 (16%), Positives = 57/188 (30%), Gaps = 19/188 (10%) Query: 85 PEIKPESETKPASPPPEPAAPQPPLKPEPVKPEPKQQKAEAPKPEFKP-------DLKPE 137 PE++ ++T + P Q + P E + EAP P P + E Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 138 PAKPEA--APPQPTPAASPAPTSAPQAQQPAPFPPAIPQEPDITVRYSVALGLPADPTFD 195 +K E+ A + A++ A Q ++ G T Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVA-----QSGSETKETQT 1097 Query: 196 APAETVADISAEAVA-ALRQRLKSCAALPASVAPSDNVKIVLRVALQPDGRLAQEPVLIE 254 + A + E A ++ + + + V+P K +QP A+E Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSP----KQEQSETVQPQAEPARENDPTV 1153 Query: 255 ASASAKGP 262 + Sbjct: 1154 NIKEPQSQ 1161
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 31.4 bits (71), Expect = 0.002 Identities = 51/228 (22%), Positives = 83/228 (36%), Gaps = 47/228 (20%) Query: 11 LLALAAASPAFAADLPLKAAPPVPALYNWTGVYIGINGSAVLSDKRWDYFGPLLPTGDDG 70 +A+A A FA +AAP Y TG +G W + ++G Sbjct: 5 AIAIAVALAGFAT--VAQAAPKDNTWY--TGAKLG-----------WSQYHDTGFINNNG 49 Query: 71 AHNFTGLFGGVQVGFDYQVGSWVFGVEAQGDW-GR--ARGTSDSLLFANQTNRTLIDAFG 127 + L G G YQV + G E DW GR +G+ ++ + Q + Sbjct: 50 PTHENQLGAGAFGG--YQVNPY-VGFEMGYDWLGRMPYKGSVENGAYKAQGVQ------- 99 Query: 128 LINGRFGYALNNAL-LYVKGGAGVVQEKYDVFATDTGVTFTNASETRWGSTVGAGLELAF 186 + + GY + + L +Y + G V + + +T G+E A Sbjct: 100 -LTAKLGYPITDDLDIYTRLGGMVWRADT------KSNVYGKNHDTGVSPVFAGGVEYAI 152 Query: 187 SEHISVAAEYNHIFLGSRDVAFAPTGDIYRI--RQDLDVLALKLNYRF 232 + I+ EY GD + I R D +L+L ++YRF Sbjct: 153 TPEIATRLEYQWT---------NNIGDAHTIGTRPDNGMLSLGVSYRF 191
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 1e-20 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Query: 2 RVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGYD 61 +L+ +DD+A + L ++V T D D+++ D+ +PD + +D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARI-HAIVRRSK 120 +L +++ ++ P+L++S +K GA DY+ KPF EL+ I A+ + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GHAQ 124 ++ Sbjct: 125 RPSK 128
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.1 bits (143), Expect = 1e-11 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 4/105 (3%) Query: 20 RVMIVDDSVVIRGLISRWIEAEPDMVVAASLRTGLDAVNQVERIKPDVAVLDIEMPELDG 79 +++ DD IR ++++ + V S + D+ V D+ MP+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITS--NAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 80 ISALPKLLAKKRDLIIIMASTLTRRNAEISFKALSLGAADYIPKP 124 LP++ + DL +++ S + KA GA DY+PKP Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQN--TFMTAIKASEKGAYDYLPKP 105
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.1 bits (208), Expect = 2e-22 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 2/105 (1%) Query: 5 LVVDDSSVIRKVARRILEGLDFEIVEAEDGEKALEVCKHGLPDAVLLDWNMPVMDGYEFL 64 LV DD + IR V + L +++ + G D V+ D MP + ++ L Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLL 66 Query: 65 RNLRRMPGGDQPKVVFCTTENDVAHIARALHAGANEYIMKPFDKD 109 +++ D P V+ + +N +A GA +Y+ KPFD Sbjct: 67 PRIKKA-RPDLP-VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.2 bits (172), Expect = 2e-14 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 4/115 (3%) Query: 795 SVLLVDDSAFFRNMLGPVLKAAGYRVRLATSAIEALGVLRTGVQFDAILTDIEMPEMNGF 854 ++L+ DD A R +L L AGY VR+ ++A + G D ++TD+ MP+ N F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDENAF 63 Query: 855 EFAEAIRADAKLAPTPVIALSSLVSPAAIERGRQAGLTDYVAK-FDRPGLIAALK 908 + I+ PV+ +S+ + + + G DY+ K FD LI + Sbjct: 64 DLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 416 bits (1071), Expect = e-144 Identities = 162/479 (33%), Positives = 247/479 (51%), Gaps = 40/479 (8%) Query: 2 RLLIVGTLKGQLTTATKIAIDNGAAVTHASDNEQAMRVLRGGKGADLLLVDVAI---DIR 58 +L+ T + G V S+ R + G G DL++ DV + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMPDENAF 63 Query: 59 DLVMRLEAEHIHVPIVACGIASDARAAVAAIHAGAKEYIPLPPDPELIAAV--------- 109 DL+ R++ +P++ + A+ A GA +Y+P P D + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 110 -----LAAVANDSRELVYRDEAMAKVVKLAQQIAGSDASVMITGESGTGKEVLARYVHTR 164 L + D LV R AM ++ ++ ++ +D ++MITGESGTGKE++AR +H Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183 Query: 165 SHRAKKPFISINCAAIPEHLLESELFGHEKGAFTGAIARRIGKFEEATGGTLLLDEISEM 224 R PF++IN AAIP L+ESELFGHEKGAFTGA R G+FE+A GGTL LDEI +M Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 225 DVRLQSKLLRAIQERVIDRVGGSRPVPVDIRILATSNRNLQDAVRAGTFREDLLFRLNVV 284 + Q++LLR +Q+ VGG P+ D+RI+A +N++L+ ++ G FREDL +RLNVV Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303 Query: 285 NLKIPPLRERPADILELAQHFARKYAEANGVPVRPISFDARRVLTTNRWQGNVRELENTI 344 L++PPLR+R DI +L +HF ++ G+ V+ +A ++ + W GNVRELEN + Sbjct: 304 PLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRELENLV 362 Query: 345 HRSVLMASGDEIGADAILTPDGDRLDQTKTPPAVAH------------------ATFAAE 386 R + D I + I + + A A A+F Sbjct: 363 RRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDA 422 Query: 387 QVTRALVGRTVADVERDLILETLKHCLGNRTHAANILGISIRTLRNKLNEYADGGLPIP 445 L R +A++E LIL L GN+ AA++LG++ TLR K+ E G+ + Sbjct: 423 LPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL---GVSVY 478
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 90.7 bits (225), Expect = 7e-27 Identities = 35/76 (46%), Positives = 55/76 (72%) Query: 37 ADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEV 96 D++ + D+PV+++ LGR++M + ELL+L G+V+ LD GE +DI +N L+A+GEV Sbjct: 52 QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111 Query: 97 VLVEDKLGVTMTEIIK 112 V+V DK GV +T+II Sbjct: 112 VVVADKYGVRITDIIT 127
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 34.4 bits (78), Expect = 2e-04 Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 10/154 (6%) Query: 30 LAQQVAAAEQRGYQAGFAQAQREVQAEAERRSA---AALEQIARAMQSIFAGIGAVEIRM 86 +A+ ++GYQ G AQ + AEA+ + A A ++Q+ Q+ + +V + Sbjct: 60 IAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSV---I 116 Query: 87 ETEAVEVAVAAARKLCTELIAAEPLAEITALVGECFRQLVSTPHLVVRISDSLYEAARER 146 + +++A+ AAR ++I P + +AL+ + + L P + ++ +R Sbjct: 117 ASRLMQMALEAAR----QVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQR 172 Query: 147 IELLAKQSGFAGRLVLLSDPEIAGGDCKIEWADG 180 ++ + + L DP + G CK+ +G Sbjct: 173 VDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEG 206
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 310 bits (795), Expect = e-106 Identities = 116/332 (34%), Positives = 185/332 (55%), Gaps = 2/332 (0%) Query: 32 KPISGPKRAAILMLALGEQYGGKIWSLLDDEEVRELSSVMSTLGTIEPETVEDLLLEFVS 91 ++G ++AAIL++++G + K++ L EE+ L+ ++ L TI E +++LLEF Sbjct: 13 SALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKE 72 Query: 92 RMSASGALM-GNYDATERLLQKYLPADRVTGIMEEIRGPAGRNMWEKLSNVQEEVLANYL 150 M A + G D LL+K L + I+ + +E + + N++ Sbjct: 73 LMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFI 132 Query: 151 KNEYPQTTAVVLSKLKPEHAAKVLAILPEDMALDVINRMLRMESVQKEVVESLERTLRSE 210 + E+PQT A++LS L P+ A+ +L+ LP ++ +V R+ M+ EVV +ER L + Sbjct: 133 QQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKK 192 Query: 211 FMSNLSQTRR-RDAHEVMAEIFNNFDRQTETRFITSLEDDNREAAERIKALMFTFDDLVK 269 S S+ + + EI N DR+TE I SLE+++ E AE IK MF F+D+V Sbjct: 193 LASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVL 252 Query: 270 LDAGSAQTLMRNIDRDKLAIALKSANEDVRGFFLGNMSSRAGKMLLDDMGALGPVRLRDV 329 LD S Q ++R ID +LA ALKS + V+ NMS RA ML +DM LGP R +DV Sbjct: 253 LDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDV 312 Query: 330 DEAQALLVNLAKDLAAKGEIVLTKNRADDELV 361 +E+Q +V+L + L +GEIV+++ +D LV Sbjct: 313 EESQQKIVSLIRKLEEQGEIVISRGGEEDVLV 344
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 340 bits (874), Expect = e-113 Identities = 158/561 (28%), Positives = 253/561 (45%), Gaps = 56/561 (9%) Query: 5 LGFLKGLGAARVMAMIAVTVALLGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKELERQ 64 L +L L A + +I A + +++ P TL+++LS +D +I+ +L + Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72 Query: 65 AIPFEMRNEGTTLMVPKDKVTRLRMKLAEGGLPKGGGVGYEIFDKSDALGTTSFVQNINH 124 IP+ N + VP DKV LR++LA+ GLPKGG VG+E+ D+ G + F + +N+ Sbjct: 73 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQE-KFGISQFSEQVNY 131 Query: 125 LRALEGELARTIRAIDRIQQARVHLVLPERPLFSRETPEPSASIVLRVRG--ALEPQQVR 182 RALEGELARTI + ++ ARVHL +P+ LF RE PSAS+ + + AL+ Q+ Sbjct: 132 QRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQIS 191 Query: 183 AIRHLVASAVNGLKPQRVSIVDEGGQLLADGSASANAADGAAGDERRTSFEKRMRNEIEG 242 A+ HLV+SAV GL P V++VD+ G LL + S + A E R++ IE Sbjct: 192 AVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFAN-DVESRIQRRIEA 250 Query: 243 IVSSVVGSGRARVQVTADFDYNKITQTSDKFDPEGRVLRS------SQTREEQSQTSAAD 296 I+S +VG+G QVTA D+ QT + + P G ++ E+ Sbjct: 251 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 310 Query: 297 GQVTVNNELPGNQGQAGTGPR----------------------DQSKKSEETNNYEISRI 334 ++N+ P +S + ET+NYE+ R Sbjct: 311 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRT 370 Query: 335 TKTEVTEAGRVNRLSVAVLVDGIYTKNEKGELVYAERPKEQLDRIAALVRSAIGFDQKRG 394 + G + RLSVAV+V+ + K +Q+ +I L R A+GF KRG Sbjct: 371 IRHTKMNVGDIERLSVAVVVNYKTLADGKPL----PLTADQMKQIEDLTREAMGFSDKRG 426 Query: 395 DQIEVVNLKFAE-APQVEKLP--EQAGLLGMFQFTKDDIMNMIQLGVMLVLGLVVLFM-- 449 D + VVN F+ +LP +Q + + +LVL + + Sbjct: 427 DTLNVVNSPFSAVDNTGGELPFWQQQSFIDQL---------LAAGRWLLVLVVAWILWRK 477 Query: 450 VIRPLVKRVL--ASDPGPEGPGLPALTDGSVPQIGADGQPQPSMIDIAQVQGQVHAQSVH 507 +RP + R + A + + ++ D Q + Q Sbjct: 478 AVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQ----LQQRRANQRLGAEVMSQ 533 Query: 508 RVGELADRNPNETAAIVRQWL 528 R+ E++D +P A ++RQW+ Sbjct: 534 RIREMSDNDPRVVALVIRQWM 554
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.6 bits (149), Expect = 5e-14 Identities = 36/194 (18%), Positives = 57/194 (29%), Gaps = 13/194 (6%) Query: 13 RRRILVVAERLFRQIGYQKTTVADIAKVLQMSPANVYRFFDSKKAIHKGVARHLMGEVEQ 72 R+ IL VA RLF Q G T++ +IAK ++ +Y F K + + + + Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 73 AAENIAAADGPA-AKRLRDLL-----GTIHRMNRERYVGDEKLHEMVAIAMEENWDVCIN 126 A LR++L T+ R + M N Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 127 HMEHILAAIEQVVAQGAASGEFDAPDVPLAAGCTCTAMVRFFHPQMIAQSFDNEGPTL-- 184 IEQ + + A + A M + M F + L Sbjct: 133 LCLESYDRIEQTLKHCIEAKMLPADLMTRRAA---IIMRGYISGLMENWLFAPQSFDLKK 189 Query: 185 --DQMVDFVLAGLR 196 V +L Sbjct: 190 EARDYVAILLEMYL 203
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 470 bits (1212), Expect = e-151 Identities = 232/1051 (22%), Positives = 429/1051 (40%), Gaps = 62/1051 (5%) Query: 6 LSAWAVKHPALILFLIFALGLSGIYSYQRLGRAEDPSFTVKVAVISVIWPGATAAEMQAQ 65 ++ + ++ P L L ++G + +L A+ P+ +S +PGA A +Q Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 66 VADPIEKKLQELPYFEKVQTYSKASFTAM-QVTFRDSTPPAEVPHLLYLLRKKLWDVAPQ 124 V IE+ + + + + S ++ + +TF+ T P ++ KL P Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIA---QVQVQNKLQLATPL 117 Query: 125 LPSNLIGPNINDEYSDVDSIL-YMMTGDGANYAQLKK---AAEGLRQRLLKVENVTKVNI 180 LP + I+ E S ++ D Q A ++ L ++ V V + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 181 YGVQDE-RIYVEFSHAKLATLGLTPQALFDSLAKQNAVTPAGTVE----TSSQRVPLRVT 235 +G Q RI+++ L LTP + + L QN AG + Q++ + Sbjct: 178 FGAQYAMRIWLDA--DLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235 Query: 236 GALDGVKAVAE-----TPVESNGRVFRLGDIATVSHGYVDPTDYLVRQKGKPAIGIGVVT 290 A K E V S+G V RL D+A V G + + + R GKPA G+G+ Sbjct: 236 -AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKL 293 Query: 291 ATGANILDLGEHVKAATAEFMGDVPQGIEIEQIADQPLVVKHAVGEFMSSFLEALVIVLF 350 ATGAN LD + +KA AE PQG+++ D V+ ++ E + + EA+++V Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 351 VSFLALG-WRTGVVVALSVPLVLAIVFIVMNVMSLDLHRVTLGALIIALGLLVDDAIIAV 409 V +L L R ++ ++VP+VL F ++ ++ +T+ +++A+GLLVDDAI+ V Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 410 EMMV-VKMEQGWDRARAASFAWESTAFPMLTGTLVTAVGFLPIGLANSSVGEYAGGIFWI 468 E + V ME A + ++ +V + F+P+ S G Sbjct: 414 ENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSIT 473 Query: 469 VAIALIASWFVAVIFTPYIGVKLLPDFAGKKGHNPDEVYHTRIYRALRA-------GVAW 521 + A+ S VA+I TP + LL + H + V Sbjct: 474 IVSAMALSVLVALILTPALCATLL-KPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGK 532 Query: 522 CVRWRGTVVLATVGIFIASIIGFGHVQQQFFPLSERPELFLQLRLPEGTAFNVTMNTVKQ 581 + G +L I ++ F + F P ++ ++LP G T + Q Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 582 -AETLLKDDGDIATYTAYVGKGSPRFWMGLNPQLPTESFAEIVIVAKDVAARERIKARLE 640 + LK++ V G + ++ + K R + E Sbjct: 593 VTDYYLKNEKANVESVFTVN--------GFSFSGQAQNAGMAFVSLKPWEERNGDENSAE 644 Query: 641 QAAHDGRLAEARVRVDR-FNFGPP--------VGFPVQFRVI-GSDTAKVREIAYKVRDI 690 H ++ ++R F P GF + G + + ++ + Sbjct: 645 AVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGM 704 Query: 691 VKVNP-NVIDPHLDWNEQSPYLKLVVDQDRARALGLTPQDVSQALAMLISGAQVTAVRDG 749 +P +++ + E + KL VDQ++A+ALG++ D++Q ++ + G V D Sbjct: 705 AAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDR 764 Query: 750 VEKIGVVARAVASERLDLGRIGELTITARNGVAVPLSQIAKVEYAHEEPILWRRNRDMAI 809 + +A A R+ + +L + + NG VP S + + P L R N ++ Sbjct: 765 GRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSM 824 Query: 810 TVRADVAEGVQAPDVTNAIWPQLKEIRDSLPSAYRIEIGGAIEEAAKGNASLFILFPVMV 869 ++ + A G + D + + + LP+ + G + L + Sbjct: 825 EIQGEAAPGTSSGDAMALM----ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISF 880 Query: 870 IAMLTLLMIQLQSFPRLLLVFLTAPLGVIGASLGLNVANAPFGFVALLGLIALAGMIMRN 929 + + L +S+ + V L PLG++G L + N ++GL+ G+ +N Sbjct: 881 VVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKN 940 Query: 930 TVILVDQI-ETDVAQGATRREAIVEATVRRARPVVLTALAAILAMIPLSRSAFWG----- 983 +++V+ + +G EA + A R RP+++T+LA IL ++PL+ S G Sbjct: 941 AILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQN 1000 Query: 984 PMAITIMGGLFVATFLTLFYLPGLYALWFRK 1014 + I +MGG+ AT L +F++P + + R Sbjct: 1001 AVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.6 bits (82), Expect = 3e-04 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 12/100 (12%) Query: 75 VSGKVAKRLVEVGQTVEIDQPLALLDQTDLKLQTEQSEAEHRAAKGVLAQATASENRVKE 134 + V + +V+ G++V L L +EA+ + L QA + Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTAL-------GAEADTLKTQSSLLQARLE-----Q 150 Query: 135 LRAKGWATEAQMDQAHAAADEARARFARAERSVDLTRNAL 174 R + + ++++ F L +L Sbjct: 151 TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.4 bits (201), Expect = 4e-18 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 628 RVLIAEDDATNQLVVMKMLQEFAADAQVVSDGAEALRMLAQEEFDVVLMDVRMPTMDGLA 687 +L+A+DDA + V+ + L D ++ S+ A R +A + D+V+ DV MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 688 ATRAIRSRGGALDGLPVIALTANAFPDDIRICREAGMTDFLAKPLRKPALVAAVLRAL 745 I+ LPV+ ++A E G D+L KP L+ + RAL Sbjct: 65 LLPRIKKAR---PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.3 bits (151), Expect = 4e-14 Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 9/196 (4%) Query: 12 RLAARRSAILAAAREAAAEGGMAAVQIAPVANRANVAAGTVYRYFPSKADLISELIADVS 71 R IL A ++ G+++ + +A A V G +Y +F K+DL SE+ Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 72 RDELAAIRRAADAAPGPSSALAAAVTTVAVHVLSHRKLAWGILAEPVDVDVSASRLASRR 131 + PG ++ + + + ++ +A + Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 132 EIANEVESRIVA--------AVQAGHLPAQ-DTALAATALLGAVHESLVGPLAPDNLDDP 182 + + ++A LPA T AA + G + + L D Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDL 187 Query: 183 VKLRDAVQTVTLLALR 198 K + L Sbjct: 188 KKEARDYVAILLEMYL 203
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.8 bits (80), Expect = 0.001 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 18/82 (21%) Query: 192 VLLVGPPGTGKTLIARAV---AGEANVPFFT-----ISGSDFVEMFVGV------GASRV 237 +++ G GTGK L+ARA+ N PF I G GA Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR 222 Query: 238 RD-MFEQAKKNAPCIIFIDEID 258 FEQA+ +F+DEI Sbjct: 223 STGRFEQAEGGT---LFLDEIG 241
>PERTACTIN#Pertactin signature. Length = 922 Score = 30.8 bits (69), Expect = 0.009 Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 6/93 (6%) Query: 69 QLQGNAGGQSAPGNAAAAPPPAASQQQPVYNQSPQQSPGYGQQPPGQVYGQQPQPQAPIV 128 +L N GQ + A A P P + Q P QPP Q QP+AP Sbjct: 551 RLAANGNGQWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAP 610 Query: 129 QDQAAAPPPSGRRRGDAFDPSQNPQAPGVPRAL 161 Q PP+GR A + + N G+ L Sbjct: 611 Q------PPAGRELSAAANAAVNTGGVGLASTL 637
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 117 bits (295), Expect = 1e-34 Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 15/149 (10%) Query: 29 NKTGLGADGAMASAATPGSQQDFV---VNVGDRVFFESDQTELSPQAAATLDKQAQWLQT 85 + G G + A A P + + V F ++ L P+ A LD+ L Sbjct: 189 YRFGQG-EAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSN 247 Query: 86 YNR--YSFTIEGHADERGTREYNIALGARRAQSVRNYLSSRGIEPSRMRTISYGKERPVA 143 + S + G+ D G+ YN L RRAQSV +YL S+GI ++ G+ PV Sbjct: 248 LDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVT 307 Query: 144 --VCND-------ISCWSQNRRAVTVLNA 163 C++ I C + +RR + Sbjct: 308 GNTCDNVKQRAALIDCLAPDRRVEIEVKG 336
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.4 bits (99), Expect = 2e-06 Identities = 34/164 (20%), Positives = 49/164 (29%), Gaps = 9/164 (5%) Query: 61 ENPKPLVEKVAEAKPVEDTVGKISEKAPVVTDTSPPPQPKPVEKPVEK---KPEPPKPVV 117 + P A+ E V + P T + K K VEK Sbjct: 1006 DVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQN 1065 Query: 118 KEEPKKEEKKAEKKPDPPKEEA---KEAEKKPDPKVDPIAEALKKEEKKKPPPPKPQTEA 174 +E +E K+ K + E K+ ++KEEK K K Q E Sbjct: 1066 RE--VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQ-EV 1122 Query: 175 AAKPEPVKPKAERVFDQSKIAALLDKRDPTRQAVAGDALNSNAA 218 V PK E+ A + DPT + + A Sbjct: 1123 PKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTA 1166 Score = 40.8 bits (95), Expect = 6e-06 Identities = 40/194 (20%), Positives = 61/194 (31%), Gaps = 20/194 (10%) Query: 28 KAFELEPQDSVAVDTISEDQLAKVMAGMRTGKKENPKPLV-----EKVAE-AKPVEDTVG 81 + +++ D S + +A + P P E VAE +K TV Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 82 KISEKAPVVTDTSPPPQPKPVEKPVEKKPE-PPKPVVKEEPKKEEKKAEKKPDPPKEEA- 139 K + A T Q + V K E K E + + E + KE A Sbjct: 1053 KNEQDA-----TETTAQNREVAK--EAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 140 KEAEKKPDPKVDPIAEALKKEEKKKPPPPK-----PQTEAAAKPEPVKPKAERVFDQSKI 194 E E+K + + E K + P + PQ E A + +P E + Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTT 1165 Query: 195 AALLDKRDPTRQAV 208 A T V Sbjct: 1166 ADTEQPAKETSSNV 1179 Score = 39.3 bits (91), Expect = 2e-05 Identities = 36/196 (18%), Positives = 62/196 (31%), Gaps = 23/196 (11%) Query: 56 RTGKKENPKPLVEKVAEAKPVEDTVGKISEKAPVVTDTSP-PPQPKPVEKPVEKKPEPPK 114 T KE VEK +AK + K E V + SP Q + V+ E E Sbjct: 1097 TTETKETAT--VEKEEKAKVETE---KTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 115 PVVKEEPKKEE----------KKAEKKPDPPKEEAKEAEKKPDPKVDPIAEALKKEEKKK 164 V +EP+ + K+ + P E+ +P + Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENP------ENTTPA 1205 Query: 165 PPPPKPQTEAAAKPEPVKPKAERVFDQSKIAALLDKRDPTRQAVAGDALNSNAALGLSKG 224 P +E++ KP+ ++ R + A D + A+ D ++N LS Sbjct: 1206 TTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALC-DLTSTNTNAVLSDA 1264 Query: 225 KSADNSATWGAMFQSQ 240 ++ Sbjct: 1265 RAKAQFVALNVGKAVS 1280
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 118 bits (296), Expect = 4e-34 Identities = 81/267 (30%), Positives = 127/267 (47%), Gaps = 15/267 (5%) Query: 4 LQGKTALVVGAGSIGPGWGNGKATAVTFAREGAQVFCVDRNAEAAEETASLITGTGGRAA 63 ++GK A + GA G G+A A T A +GA + VD N E E+ S + A Sbjct: 6 IEGKIAFITGAAQ-----GIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 64 AFAADASRAVDVEAMVHACMAAYGQIDVLDNNVGIAETGGVVEISEAEWDRVFAVNLKSA 123 AF AD + ++ + G ID+L N G+ G + +S+ EW+ F+VN Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 124 FLAMKHVIPIMQRQGGGSIINI-SSIASIRHLGISYVSYAASKAAMNAMTRTTAVEYARD 182 F A + V M + GSI+ + S+ A + ++ +YA+SKAA T+ +E A Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMA--AYASSKAAAVMFTKCLGLELAEY 178 Query: 183 HIRVNCILPGLMKTPM---VAHSAGLAASYAGGDVEAMWRARDEQVPMGHMGEAWDVANA 239 +IR N + PG +T M + A G +E +P+ + + D+A+A Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG----IPLKKLAKPSDIADA 234 Query: 240 ALFLAGDESKYVTGLELVVDGGLTLKV 266 LFL ++ ++T L VDGG TL V Sbjct: 235 VLFLVSGQAGHITMHNLCVDGGATLGV 261
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 33.3 bits (76), Expect = 0.002 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 19/145 (13%) Query: 275 IVMVPVAMLVGHKADVWGRKPIFAVALGVLALRGALYPLSDNPFWLVGVQMLDGVGAGIF 334 ++ A ++G +D +GR+P+ V+L A+ A+ + W++ + + AGI Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPF-LWVL---YIGRIVAGIT 109 Query: 335 GALFPL---VVADLTRG---TGHFNISQGAIATATGIGGALSTGVAGLIVVTAGYSAA-- 386 GA + +AD+T G HF G ++ G G + GL+ G+S Sbjct: 110 GATGAVAGAYIADITDGDERARHF----GFMSACFGFGMVAGPVLGGLM---GGFSPHAP 162 Query: 387 FLTLAAIAALGLVLFVVLMPETRQT 411 F AA+ L + L+PE+ + Sbjct: 163 FFAAAALNGLNFLTGCFLLPESHKG 187
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 29.0 bits (65), Expect = 0.042 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 4/86 (4%) Query: 403 ADAARDRVMAMLAEANPSNPVVLTGDLHRALAFELRRDWRDPNSPRIGVEFVSSSISSPG 462 A +DR NP +P + + + E+ + V F + S G Sbjct: 126 ARPEQDRWSRFYKTDNPQSPQNILANR-TDVFVEI-KRVSFLGGNVAQVYF--TKESVTG 181 Query: 463 DGPTTGDNLATMYKNNPNLKFFSDQR 488 T D +AT+ R Sbjct: 182 SNSTKTDAVATIKYKVDGTPSKEVDR 207
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.040 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%) Query: 16 AFGRRKVS-PRACIIDGKPHLRAFLADALDELRFVTSECSGVDELAAVVGEQQ 67 A+GR PR +I + R +L D RF G L + + Sbjct: 675 AYGRYVQDHPRQVVIWCTTNKRQYLFDITGNRRFWPVLVPGRANLVWLQKFRG 727
>PF06580#Sensor histidine kinase Length = 349 Score = 39.5 bits (92), Expect = 3e-05 Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 18/98 (18%) Query: 568 NAANHAF-PGGRAGTITITARQRADDIEIVFADNGAGMTPDVQRQAFDPFFTTRRNEGGT 626 N H + G I + + + + + G+ + + T Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE--------------ST 311 Query: 627 GLGLHIVYNLVTQQLGGRMML--ESRLGQGTTFRIIMP 662 G GL V + G + + G +++P Sbjct: 312 GTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>PF06580#Sensor histidine kinase Length = 349 Score = 38.3 bits (89), Expect = 5e-05 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 23/105 (21%) Query: 446 LVSNAIKY----SPIGGRIALQVDGDDDNTIIRVTDEGAGLSPEDLSRLFGRFQRLSAKP 501 LV N IK+ P GG+I L+ D+ + V + G+ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT--------------- 307 Query: 502 TAGESSTGLGLSIV-KKIIDMHGGLVSARSEGPGQGSTFIISLPA 545 + STG GL V +++ ++G + ++ +P Sbjct: 308 ---KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.8 bits (215), Expect = 1e-21 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 1/135 (0%) Query: 3 QNPHIIVVDDEAPAREMVGDYLRMHGFAVTLCDGGKSLRAEIETKVPDLVVLDLNMPEED 62 I+V DD+A R ++ L G+ V + +L I DLVV D+ MP+E+ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLSIIRDLKA-KTNVPVIMLTATASPIDRVVGLELGADDYVAKPCELRELMARIRSVLRR 121 ++ +K + ++PV++++A + + + E GA DY+ KP +L EL+ I L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 122 SAPRPTAAPAPAATP 136 RP+ + Sbjct: 122 PKRRPSKLEDDSQDG 136
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 25.6 bits (56), Expect = 0.006 Identities = 10/37 (27%), Positives = 18/37 (48%) Query: 7 PSSPLSRRLLWFVALWLVGVGAVTLLSLVLRLWIAPG 43 P S R + +F+ +LV +++L V + A G Sbjct: 52 PVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANG 88