>SSPANPROTEIN#Salmonella invasion protein InvJ signature. Length = 336 Score = 31.6 bits (71), Expect = 0.003 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 9/95 (9%) Query: 112 VTNLHNNRKVIVRINDRGPFSDKRLIDLSHAAAKEIGLISRGIGQVRIEALHVAKNGNLS 171 V+ LH+N K +RI ++ L A K +GLIS + AL +KN L Sbjct: 82 VSGLHHNGKSELRIAEK---------LLKVTAEKSVGLISAEAKVDKSAALLSSKNRPLE 132 Query: 172 GAATKTLAKQAKTQEAADRLVLKSNTLFDNTSKSI 206 + K L+ K E+ + + + D+ K++ Sbjct: 133 SVSGKKLSADLKAVESVSEVTDNATGISDDNIKAL 167
>PF05272#Virulence-associated E family protein Length = 892 Score = 36.2 bits (83), Expect = 5e-04 Identities = 11/36 (30%), Positives = 22/36 (61%) Query: 418 TSLLIQGKSGAGKTTLLRTIAGLWSYAEGEINCPTH 453 S++++G G GK+TL+ T+ GL +++ + T Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG 632
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 535 bits (1381), Expect = 0.0 Identities = 279/349 (79%), Positives = 314/349 (89%), Gaps = 2/349 (0%) Query: 2 LFKKIRGLFSNDLSIDLGTANTLIYVKRQGIVLDEPSVVAIRQDRVGTLKSIAAVGKEAK 61 + KK RG+FSNDLSIDLGTANTLIYVK QGIVL+EPSVVAIRQDR G+ KS+AAVG +AK Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAK 60 Query: 62 LMLGRTPKSIVAIRPMKDGVIADFFVTEKMLQYFIKQVHSGNFMRPSPRVLVCVPAGATQ 121 MLGRTP +I AIRPMKDGVIADFFVTEKMLQ+FIKQVHS +FMRPSPRVLVCVP GATQ Sbjct: 61 QMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQ 120 Query: 122 VERRAIKESAIGAGAREVYLIEEPMAAAIGAKLPVSTAVGSMVIDIGGGTTEVAVISLNG 181 VERRAI+ESA GAGAREV+LIEEPMAAAIGA LPVS A GSMV+DIGGGTTEVAVISLNG Sbjct: 121 VERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG 180 Query: 182 IVYSSSVRIGGDRFDEAIISYVRRTFGSVIGEPTAERIKQEIGSAYIQEGDEIKEMEVHG 241 +VYSSSVRIGGDRFDEAII+YVRR +GS+IGE TAERIK EIGSAY GDE++E+EV G Sbjct: 181 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYP--GDEVREIEVRG 238 Query: 242 HNLAEGAPRSFTLTSRDVLEAIQQPLNGIVAAVRTALEECQPEHAADIFERGMVLTGGGA 301 NLAEG PR FTL S ++LEA+Q+PL GIV+AV ALE+C PE A+DI ERGMVLTGGGA Sbjct: 239 RNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGA 298 Query: 302 LLRNIDILLSKESGVPVIIAEDPLTCVARGGGEALEMIDMHGGDIFSDE 350 LLRN+D LL +E+G+PV++AEDPLTCVARGGG+ALEMIDMHGGD+FS+E Sbjct: 299 LLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.7 bits (248), Expect = 6e-27 Identities = 73/269 (27%), Positives = 122/269 (45%), Gaps = 21/269 (7%) Query: 13 LENKLIIITGAGGVLCSFLAKQLAYTKANIALLDLNFEAADKVAKEINQSGGKAKAYKTN 72 +E K+ ITGA + +A+ LA A+IA +D N E +KV + A+A+ + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 73 VLELENIKEVRNQIETDFGTCDILINGAGGNNPKATTDNEFHQFDLNETTRTFFDLDKSG 132 V + I E+ +IE + G DIL+N AG P H L Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLI-----HS------------LSDEE 108 Query: 133 IEFVFNLNYLGSLLPTQVFAKDMLGKQGANIINISSMNAFTPLTKIPAYSGAKAAISNFT 192 E F++N G ++ +K M+ ++ +I+ + S A P T + AY+ +KAA FT Sbjct: 109 WEATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFT 168 Query: 193 QWLAVYFSKVGIRCNAIAPGFLVSNQNLALLFDTEGKP---TDRANKILTNTPMGRFGES 249 + L + ++ IRCN ++PG ++ +L D G T P+ + + Sbjct: 169 KCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKP 228 Query: 250 EELLGALLFLIDENYSAFVNGVVLPVDGG 278 ++ A+LFL+ + + L VDGG Sbjct: 229 SDIADAVLFLVSGQ-AGHITMHNLCVDGG 256
>PF06580#Sensor histidine kinase Length = 349 Score = 26.8 bits (59), Expect = 0.041 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 8/125 (6%) Query: 39 SVLRYFFDSGIAFSEEFSRICFVYMISFGIILVAKDKAHLTVDIIIPALPEQYRKIVLIV 98 L F + + S + + F IS +++ A+ + L +I+L V Sbjct: 23 YTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTH--AYRSFIKRQGWLKLNMGQIILRV 80 Query: 99 ANICVLIAMIFIAYGALQLMSLTYTQQMPATGISSSFL------YLAAVISAVSYFFIVM 152 CV+I M++ L + P L + + ++ YF Sbjct: 81 LPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGWHF 140 Query: 153 FSMIK 157 F K Sbjct: 141 FKNYK 145
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 33.6 bits (77), Expect = 0.001 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 22/105 (20%) Query: 190 AIPILVDILEQRLEYAKSLGIEH--IVNPHKEDD----IK-RIK----EITSGRMAEVVM 238 + + D + +Y K L + I +KE + IK + + EI S M E V Sbjct: 196 VVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVK 255 Query: 239 EASGANISIKNTLHYASFAGRIALTGWPKTETPLPTNLITFKELN 283 +S + + N H A I + + + ETPLP L+TFK + Sbjct: 256 RSS---VVVANPTHIA-----IGI-LYKRGETPLP--LVTFKYTD 289
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 142 bits (359), Expect = 1e-43 Identities = 86/254 (33%), Positives = 133/254 (52%), Gaps = 13/254 (5%) Query: 1 MQGKIALVTGSTRGIGRAIAEELSSKGAFVIGTATSEKGAEAISAYLGDKGK---GLVLN 57 ++GKIA +TG+ +GIG A+A L+S+GA + + + E + + L + + + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 58 VTDKESIETLLEQIKNDFGDIDILVNNAGITRDNLLMRMKDEEWFDIMQTNLTSVYHLSK 117 V D +I+ + +I+ + G IDILVN AG+ R L+ + DEEW N T V++ S+ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 118 AMLRSMMKKRFGRIINIGSVVGSTGNPGQTNYCAAKAGVVGFSKSLAKEVAARGITVNVV 177 ++ + MM +R G I+ +GS Y ++KA V F+K L E+A I N+V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 178 APGFIATDMTEVLTDEQKA------GILSN----VPAGRLGEAKDIAKAVAFLASDDAGY 227 +PG TDM L ++ G L +P +L + DIA AV FL S AG+ Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 228 ITGTTLHVNGGLYL 241 IT L V+GG L Sbjct: 246 ITMHNLCVDGGATL 259
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 7e-04 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%) Query: 16 PAQVIHSGNAVNQVAILGEEYVGMRPSMKVREGDVVKKGQVLFE 59 ++ HSG + I + + V+EG+ V+KG VL + Sbjct: 87 NGKLTHSGRSKEIKPIEN----SIVKEIIVKEGESVRKGDVLLK 126
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 147 bits (371), Expect = 2e-45 Identities = 56/215 (26%), Positives = 84/215 (39%), Gaps = 31/215 (14%) Query: 55 MVLEEPAPEPEDVQKEPEPEPEPGNVQKEPEPEKQEIVEDPTIKPEPKKIKEPEKEKPKP 114 MV P+ VQ PEP EPEPE + I E P E P Sbjct: 49 MVTPADLEPPQAVQPPPEP-------VVEPEPEPEPIPEPPK-------------EAPVV 88 Query: 115 KGKPKGKPKNKPKKEVKPQKKPINKELPKGDENIDSSANVNDKASTTSAANSNAQVAGSG 174 KPK KPK KPK K Q++P +++ + S A TS+ + A Sbjct: 89 IEKPKPKPKPKPKPVKKVQEQP-KRDVKPVESRPASPFENTAPARLTSSTATAATSKPVT 147 Query: 175 TDTSEIAAYRSAIRREIESHKRYPTRAKIMRKQGKVSVSFNVGADGSLSGAKVTKSSGDE 234 + S A +YP RA+ +R +G+V V F+V DG + ++ + Sbjct: 148 SVASGPRALSRN-------QPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPAN 200 Query: 235 SLDKAALDAINVSRSVGTRPAGFPSSLSVQISFTL 269 ++ +A+ R +P S + V I F + Sbjct: 201 MFEREVKNAMRRWRYEPGKPG---SGIVVNILFKI 232
>PF06291#Lambda prophage Bor protein Length = 102 Score = 28.9 bits (64), Expect = 0.006 Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 1 MKKIILNLVTAIILAGCSSNPETLKATNDSFQKSETSIPHF 41 MKK++ + A+++ GC+ T+ + ET HF Sbjct: 6 MKKMLFSAALAMLITGCAQQTFTVGNKPTAVTPKETITHHF 46
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 171 bits (436), Expect = 4e-53 Identities = 81/350 (23%), Positives = 151/350 (43%), Gaps = 37/350 (10%) Query: 1 MAILVTGGAGYIGSHTVVELLNVGKEVVVLDNLCNSSPKSLE--RVKQITGKEAKFYEGD 58 M LVTG AG+IG H LL G +VV +DNL + SL+ R++ + +F++ D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 59 ILDRALLQKIFAENEINSVIHFAGLKAVGESVQKPTEYYMNNVAGTLVLIQEMKKAGVWN 118 + DR + +FA V AV S++ P Y +N+ G L +++ + + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 119 FVFSSSATVYGDPKIIPITEDCEVGGTTNPYGTSKYMVEQILRDTAKAEPKFSMTILRYF 178 +++SS++VYG + +P + D V + Y +K E ++ T T LR+F Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE-LMAHTYSHLYGLPATGLRFF 179 Query: 179 NPVGAHESGLIGEDPNGIPNNLLP-YISQVAIGKLAQLSVFGSDYDTHDGTGVRDYIHVV 237 G P G P+ L + + GK + V+ G RD+ ++ Sbjct: 180 TVYG----------PWGRPDMALFKFTKAMLEGK--SIDVYN------YGKMKRDFTYID 221 Query: 238 DLAVGHLKALQ---------------RHENDAGLHIYNLGTGHGYSVLDMVKAFEKANNI 282 D+A ++ + A +YN+G ++D ++A E A I Sbjct: 222 DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI 281 Query: 283 TIAYKLVERRSGDIATCYSDPSLAAKELGWVAERGLEKMMQDTWNWQKNN 332 ++ + GD+ +D + +G+ E ++ +++ NW ++ Sbjct: 282 EAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 27.9 bits (62), Expect = 0.040 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 107 KENIIKLLPSFSQNKSQSDIHSMEYDLNALY-FLQKHYGVNIYCISPES 154 +E +I LL +F S++ I EY + L L +G+ +Y ++ + Sbjct: 156 REALIPLLRNFELKLSKNKIVGEEYRIRYLIALLYSKFGIKVYDLTQQD 204
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 278 bits (712), Expect = 8e-93 Identities = 96/338 (28%), Positives = 158/338 (46%), Gaps = 37/338 (10%) Query: 15 FIVQSEAMKSAVENAKRFAMFDAPLLIQGETGSGKDLLAKACHYQSLRRDKKFIAVNCAG 74 + +S AM+ R D L+I GE+G+GK+L+A+A H RR+ F+A+N A Sbjct: 139 LVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAA 198 Query: 75 LPDEDAESEMFGRKVG-----DSETIGFFEYANKGTVLLDGIAELSLSLQAKLLRFLTDG 129 +P + ESE+FG + G + + G FE A GT+ LD I ++ + Q +LLR L G Sbjct: 199 IPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQG 258 Query: 130 SFRRVGEEKEHYANVRVICTSQVPLHLLVEQGKVRADLFHRLNVLTINVPALRDRMADIE 189 + VG ++VR++ + L + QG R DL++RLNV+ + +P LRDR DI Sbjct: 259 EYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIP 318 Query: 190 PLAQGFLQEISEELKIAKPTFDKDFLLYLQKYDWKGNVRELYNTLYRACSLVQDNHLTIE 249 L + F+Q+ +E K FD++ L ++ + W GNVREL N + R +L + +T E Sbjct: 319 DLVRHFVQQAEKEGLDVK-RFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITRE 377 Query: 250 SLNLALPQSAVISLDEF-----ENKTLDEIIGFYEAQVLKLFYAEYPSTRKL-------- 296 + L S E + ++ + + Q F P + Sbjct: 378 IIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEME 437 Query: 297 ------------------AQRLGVSHTAIANKLKQYGI 316 A LG++ + K+++ G+ Sbjct: 438 YPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.030 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 28/128 (21%) Query: 127 GVIEALRALRPEARFLELVHRLDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVR 186 I L E +++E V+ L S + + S + + + + V + + + Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQL---EQIESEILSA--KEEYQLVTQLFKNEIL 301 Query: 187 GQWQSHIKVIQASLLKNELSSGERIVRVSEQGKPSETRFSIEERYINATLVKASPVTGRT 246 + + LL EL+ E E+ + S R +PV+ + Sbjct: 302 DKLRQTTD--NIGLLTLELAKNE------ERQQASVIR---------------APVSVKV 338 Query: 247 HQIRVHTQ 254 Q++VHT+ Sbjct: 339 QQLKVHTE 346
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 33.0 bits (75), Expect = 4e-05 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 4 GGDVKADQETSGSRSIKRIGFG--FIGGIGYDITPNITLDLGYRY-NDWGRLE--NVRFK 58 G +AD +++ G F GG+ Y ITP I L Y++ N+ G R Sbjct: 120 GMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPD 179 Query: 59 THEASFGVRYRF 70 S GV YRF Sbjct: 180 NGMLSLGVSYRF 191 Score = 28.0 bits (62), Expect = 0.002 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 4/44 (9%) Query: 31 GYDITPNITLDLGY----RYNDWGRLENVRFKTHEASFGVRYRF 70 GY + P + ++GY R G +EN +K + + Sbjct: 63 GYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGY 106
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 36.2 bits (83), Expect = 0.001 Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 4/102 (3%) Query: 937 RDGVEKDKRALEIEEMQLREAKKDLTEELEILEAGLFARVRNLLISSGADAAQLDKLDRT 996 + +EK K L E L A A + L GA + Sbjct: 192 QAELEKALEGAMNFSTADSAKIKTLEAEKAALAARK-ADLEKAL--EGAMNFSTADSAKI 248 Query: 997 KWLEQTIAD-EEKQNQLEQLAEQYEELRKEFEHKLEVKRKKI 1037 K LE A E +Q +LE+ E K++ + Sbjct: 249 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 290
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1043 bits (2698), Expect = 0.0 Identities = 362/575 (62%), Positives = 436/575 (75%), Gaps = 8/575 (1%) Query: 1 MALTISRAQYVATYGPTVGDKVRLGDTNLWATIEQDLLTKGDECKFGGGKSVRDGMAQSG 60 M+ +SRA Y +GPTVGDKVRL DT L+ +E+D T G+E KFGGGK +RDGM QS Sbjct: 1 MSYRMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQS- 59 Query: 61 TATRDNPNVLDFVITNVMIIDAKLGIIKADIGIRDGRIVGIGQAGNPDTMDNVTPNMIIG 120 TR+ +D VITN +I+D GI+KADIG++DGRI IG+AGNPD V +I+G Sbjct: 60 QVTREG-GAVDTVITNALILDH-WGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVG 115 Query: 121 ASTEVHNGAHLIATAGGIDTHIHFICPQQAQHAIESGVTTLIGGGTGPADGTHATTCTPG 180 TEV G I TAGG+D+HIHFICPQQ + A+ SG+T ++GGGTGPA GT ATTCTPG Sbjct: 116 PGTEVIAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPG 175 Query: 181 AWYMERMFQAAEALPVNVGFFGKGNCSTLDPLREQIEAGALGLKIHEDWGATPAVIDSAL 240 W++ RM +AA+A P+N+ F GKGN S L E + GA LK+HEDWG TPA ID L Sbjct: 176 PWHIARMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCL 235 Query: 241 KVADEMDIQVAIHTDTLNESGFLEDTMKAIDGRVIHTFHTEGAGGGHAPDIIKAAMYSNV 300 VADE D+QV IHTDTLNESGF+EDT+ AI GR IH +HTEGAGGGHAPDII+ NV Sbjct: 236 SVADEYDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNV 295 Query: 301 LPASTNPTRPFTKNTIDEHLDMLMVCHHLDKRVPEDVAFADSRIRPETIAAEDILHDMGV 360 +P+STNPTRP+T NT+ EHLDMLMVCHHL +PED+AFA+SRIR ETIAAEDILHD+G Sbjct: 296 IPSSTNPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGA 355 Query: 361 FSIMSSDSQAMGRIGEVVIRTWQTADKMKMQRGELGNE--GNDNFRIKRYIAKYTINPAI 418 FSI+SSDSQAMGR+GEV IRTWQTADKMK QRG L E NDNFR+KRYIAKYTINPAI Sbjct: 356 FSIISSDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAI 415 Query: 419 AHGIAEHIGSLEVGKIADIVLWKPMFFGVKPEVVIKKGFISYAKMGDPNASIPTPQPVFY 478 AHG++ IGSLEVGK AD+VLW P FFGVKP++V+ G I+ A MGDPNASIPTPQPV Y Sbjct: 416 AHGLSHEIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHY 475 Query: 479 RPMYGAQGLATAQTAVFFVSQAAEKADIRAKFGLHKETIAVKGCR-NVGKKDLVHNDVTP 537 RPM+GA G + ++V FVSQA+ A + + G+ KE +AV+ R +GK ++HN +TP Sbjct: 476 RPMFGAYGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTP 535 Query: 538 NITVDAERYEVRVDGELITCEPVDSVPLGQRYFLF 572 +I VD E YEVR DGEL+TCEP +P+ QRYFLF Sbjct: 536 HIEVDPETYEVRADGELLTCEPATVLPMAQRYFLF 570
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 25.7 bits (56), Expect = 0.034 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 9/48 (18%) Query: 36 TRAKVLAVGKGRILENGT--VQPLDVKV-------GDIVIFNDGYGVK 74 T A++ A+G+ ++L T +++ G++V ND GV+ Sbjct: 244 TLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTLGVE 291
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 169 bits (429), Expect = 1e-57 Identities = 92/132 (69%), Positives = 106/132 (80%), Gaps = 4/132 (3%) Query: 1 MNFIKEFREFAMRGNVVDMAVGVIIGSAFGKIVSSLVSDIFTPVLGILTGGIDFKDMKFV 60 M+ IKEFREFAMRGNVVD+AVGVIIG+AFGKIVSSLV+DI P LG+L GGIDFK Sbjct: 1 MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVT 60 Query: 61 LAQAQGDVPAVTLNYGLFIQNVIDFIIIAFAIFMMIKVINKV-RKPEEKKTAP---KAET 116 L AQGD+PAV ++YG+FIQNV DF+I+AFAIFM IK+INK+ RK EE AP K E Sbjct: 61 LRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAAPAPTKEEV 120 Query: 117 LLTEIRDLLKNK 128 LLTEIRDLLK + Sbjct: 121 LLTEIRDLLKEQ 132
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 83.4 bits (206), Expect = 2e-19 Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 25/194 (12%) Query: 13 VNVGTIGHVDHGKTTLT-------AAITTVLAKHYGGAARAFDQIDNAPEEKARGITINT 65 +N+G + HVD GKTTLT AIT + + G + DN E+ RGITI T Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTT-----RTDNTLLERQRGITIQT 58 Query: 66 SHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 125 + +D PGH D++ + + +DGAIL+++A DG QTR R+ Sbjct: 59 GITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK 118 Query: 126 VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ--------YDFPGDDTPIVRGSALQ 177 +G+P I F+NK D + L V +++E LS +P + + + + Sbjct: 119 MGIP-TIFFINKIDQNGID--LSTVYQDIKEKLSAEIVIKQKVELYP--NMCVTNFTESE 173 Query: 178 ALNGVAEWEEKILE 191 + V E + +LE Sbjct: 174 QWDTVIEGNDDLLE 187
>PF06776#Invasion associated locus B Length = 214 Score = 26.4 bits (58), Expect = 0.015 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 4/32 (12%) Query: 69 KVDDGYLLKADFTFC----CQAELVIFQMRIA 96 K+D+ + +A F C C AE+V+ + Sbjct: 146 KLDNVDVGRAGFVRCLPNGCVAEVVMDDKLLG 177
>PF07299#Fibronectin-binding protein (FBP) Length = 219 Score = 32.9 bits (75), Expect = 0.002 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 7/78 (8%) Query: 373 HLLEELNQNWEVLAEPIQTVMRRYGIEKPYEKLKELTRG-KRVTEQAMREF---IDKLDI 428 H+ E L + L + + TV R E K+ + VT Q +++ KL + Sbjct: 52 HVFENLTDEQKELIDTVLTVQNREDAESFLLKINPYVIPFQEVTAQTLKKLFPKAKKLKL 111 Query: 429 PQEEKLRLQKLTPATYIG 446 P E+L +++L +Y+ Sbjct: 112 PDMEELDMKEL---SYLS 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 1e-04 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 28/160 (17%) Query: 570 VIGQEEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAM 629 ++G+ A+ + + R L + + + G +G GK + + L + Sbjct: 139 LVGRSAAMQEIYRVLAR----LMQTDLTL---MITGESGTGKELVARALHDYGKRRNGPF 191 Query: 630 VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSV-------ILLDEVEKA 682 V I+M+ S L G +E+G + T A R + LDE+ Sbjct: 192 VAINMAAIPRDLIESELFG-------HEKGAF-TGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 683 HADVFNILLQVLDDG---RLTDGQGRTVDFRNTVVIMTSN 719 D LL+VL G + D R ++ +N Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN 280 Score = 36.3 bits (84), Expect = 5e-04 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 151 DQNAEESRQALEKYTIDLTARAESG-KLDPVIGRDEEIRRAIQVLQRRTKNN-PVLI-GE 207 + +AL + + + P++GR ++ +VL R + + ++I GE Sbjct: 109 TELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGE 168 Query: 208 PGVGKTAI 215 G GK + Sbjct: 169 SGTGKELV 176
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 173 bits (440), Expect = 1e-48 Identities = 102/443 (23%), Positives = 176/443 (39%), Gaps = 62/443 (13%) Query: 9 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFESARGDVDE--RVMDSNDLEKERGITILAKN 66 K+ NI ++AHVD GKTTL + LL SG G VD+ D+ LE++RGITI Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITEL-GSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 67 TAINWNDYRINIVDTPGHADFGGEVERVLSMVDSVLLVVDAFDGPMPQTRFVTQKAFAHG 126 T+ W + ++NI+DTPGH DF EV R LS++D +L++ A DG QTR + G Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 Query: 127 LKPIVVINKVDRPGARPDWVVDQVFDLF---------VNLGASDEQLDFPII--YASALN 175 + I INK+D+ G V + + V L + +F + + + Sbjct: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180 Query: 176 G--------VAG--LEHEDLAEDMT-----------------------PLFEAIVKHVEP 202 G ++G LE +L ++ + L E I Sbjct: 181 GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYS 240 Query: 203 PKVELDAPFQMQISQLDYNNYVGVIGIGRIKRGSIKPNQPVTIINSEGKTRQGRIGQVLG 262 + ++ +++Y+ + R+ G + V I E +I ++ Sbjct: 241 STHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI----KITEMYT 296 Query: 263 HLGLQRYEEDVAYAGDIVAITGLGELNISDTICDINTVEALPSLTVDEPTVTMFFCVNTS 322 + + + D AY+G+IV + L ++ + D + + P + + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEF-LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKP 355 Query: 323 PFAGQEGKYVTSRQILERLNKELVHNVALRVEETPNPDEFRVSGRGELHLSVLIENMRRE 382 Q L ++ + LR E +S G++ + V ++ + Sbjct: 356 ---QQREML---LDALLEISDS---DPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEK 406 Query: 383 -GYELAVSRPKVIYRDIDGKKQE 404 E+ + P VIY + KK E Sbjct: 407 YHVEIEIKEPTVIYMERPLKKAE 429 Score = 32.9 bits (75), Expect = 0.004 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 3/89 (3%) Query: 404 EPYEQVTIDVEEQHQGSVMEALGIRKGEVRDMLPDGKG-RVRLEYIIPSRGLIGFRGDFM 462 EPY I +++ + D K V L IP+R + +R D Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVD--TQLKNNEVILSGEIPARCIQEYRSDLT 594 Query: 463 TMTSGTGLLYSSFSHYDEIKGGEIGQRKN 491 T+G + + Y G + Q + Sbjct: 595 FFTNGRSVCLTELKGYHVTTGEPVCQPRR 623
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 170 bits (433), Expect = 1e-52 Identities = 77/353 (21%), Positives = 141/353 (39%), Gaps = 46/353 (13%) Query: 1 MNILVTGGSGFIGSALIRYIINHTQDFVINIDKLT--YAANQSALR-EVENNPRYVFEKV 57 M LVTG +GFIG + + ++ V+ ID L Y + R E+ P + F K+ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 58 DICDLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHT 117 D+ D + ++F + V V S+ + +N+ G +LE ++ Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN--- 116 Query: 118 LDEAKKTTFRFHHISTDEVYGDLSLSEPAFTEQSPYHPSSPYSASKAASNHLVQAWHRTY 177 + + + S+ VYG L+ P T+ S HP S Y+A+K A+ + + Y Sbjct: 117 --KIQHLLYA----SSSSVYG-LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY 169 Query: 178 GLPVIITNSSNNYGAYQHAEKLIPLMISNAVMGKPLPIYGDGQQIRDWLFVEDHVQASYL 237 GLP YG + + + + GK + +Y G+ RD+ +++D +A Sbjct: 170 GLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229 Query: 238 VL------------------TKGRVGENYNIGGNCEKTNLEVVKRICQLLEELAPSKPNH 279 + YNIG + ++ ++ + L +K N Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI--EAKKN- 286 Query: 280 IKYYEDLMTFVKDRPGHDVRYSL-DCSKIHAELGWQPQITFEQGLRQTVKWYL 331 + +PG DV + D ++ +G+ P+ T + G++ V WY Sbjct: 287 ---------MLPLQPG-DVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYR 329
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 780 bits (2015), Expect = 0.0 Identities = 304/551 (55%), Positives = 397/551 (72%), Gaps = 16/551 (2%) Query: 1 MDSRRSLLVLALIFISFLVYQQWQLDKNPPVQTEQTTSITATSDVPASSPSNSQAIADSQ 60 MDS+R+LLV+AL+F+SF+++Q W+ DKNP Q +QTT T T+ A S ++ A Q Sbjct: 1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTA---AGSAADQGVPASGQ 57 Query: 61 TRGRIITLENDVFRLKIDTLGGDVISSELLKYDAELDSKTPFELLKDTKEHIYIAQSGLI 120 G++I+++ DV L I+T GGDV + L Y EL+S PF+LL+ + + IY AQSGL Sbjct: 58 --GKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLT 115 Query: 121 GKNGIDTRSG--RAQYQIEGDNFKLAEGQESLSVPLLF-EKDGVTYQKIFVLKRGSYDLG 177 G++G D + R Y +E D + LAEGQ L VP+ + + G T+ K FVLKRG Y + Sbjct: 116 GRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVN 175 Query: 178 VDYKIDNQSGQAIEVEPYGQLKHSIV------ESSGNVAMPTYTGGAYSSSETNYKKYSF 231 V+Y + N + +E+ +GQLK SI S N A+ T+ G AYS+ + Y+KY F Sbjct: 176 VNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDEKYEKYKF 235 Query: 232 SDMQDN-NLSIDTKAGWVAVLQHYFVSAWIPNQDVNNQLYTITDSKNNVASIGYRGSVVT 290 + DN NL+I +K GWVA+LQ YF +AWIP+ D N YT + N +A+IGY+ V Sbjct: 236 DTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYT-ANLGNGIAAIGYKSQPVL 294 Query: 291 IPAGSQETITSSLWTGPKLQNQMATVANNLDLTVDYGWAWFIAKPLFWLLTFIQGIVSNW 350 + G + S+LW GP++Q++MA VA +LDLTVDYGW WFI++PLF LL +I V NW Sbjct: 295 VQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNW 354 Query: 351 GLAIICVTIVVKAILYPLTKAQYTSMAKMRILQPKMQEMRERFGDDRQRMSQEMMKLYKE 410 G +II +T +V+ I+YPLTKAQYTSMAKMR+LQPK+Q MRER GDD+QR+SQEMM LYK Sbjct: 355 GFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKA 414 Query: 411 EKVNPLGGCLPILLQMPIFIALYWTFLEAVELRHAPFFGWIQDLSAQDPYYILPILMGIS 470 EKVNPLGGC P+L+QMPIF+ALY+ + +VELR APF WI DLSAQDPYYILPILMG++ Sbjct: 415 EKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVT 474 Query: 471 MFLLQKMSPTPVTDPTQQKVMNFMPLVFMFFFLWFPSGLVLYWLVSNLITIAQQQLIYRG 530 MF +QKMSPT VTDP QQK+M FMP++F FFLWFPSGLVLY++VSNL+TI QQQLIYRG Sbjct: 475 MFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRG 534 Query: 531 LEKKGLHSRKK 541 LEK+GLHSR+K Sbjct: 535 LEKRGLHSREK 545
>PF03309#Bvg accessory factor Length = 271 Score = 29.3 bits (66), Expect = 0.031 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 12/74 (16%) Query: 5 LGIDCGGTFIKAAIFDQNGTLQSIARRNIPIISEKPGYAERDMDELWNLCAQVIQKTIRQ 64 L ID T + +G + + I +E E DEL +I Sbjct: 3 LAIDVRNTHTVVGLISGSGDHAKV-VQQWRIRTEP----EVTADELALTIDGLIGDD--- 54 Query: 65 SSILPQQIKAIGIS 78 +++ Sbjct: 55 ----AERLTGASGL 64
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.9 bits (90), Expect = 2e-04 Identities = 34/292 (11%), Positives = 83/292 (28%), Gaps = 33/292 (11%) Query: 881 EINRERNEIDRELNQFNSGEQQLRIQLDNAKERLQLLNKLIPQLNVLADEDLIDRIEECR 940 +++ + ++ + +L + L I ++L R + Sbjct: 75 DLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKI--------QELEARKADLE 126 Query: 941 EQLDIAE----QDEYFIRQHGVTLSQLEPIANSLQSDPENYEGLKNELTQAIERQKQVQQ 996 + L+ A D I+ + L L+ E + I+ + + Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186 Query: 997 RVFALADVVQRKPHFGYEDAGQAET------------SELNEKLRQRLEQMQAQRDTQRE 1044 + A +++ + + L + LE Sbjct: 187 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 246 Query: 1045 QVRQKQSQFAEYNRVLIQLQSSYDSKYQLLNELIGEISDLGVRADDGAEERARIR----- 1099 +++ +++ A +L+ + + +I L E+A + Sbjct: 247 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV 306 Query: 1100 ----RDELHQQLSTSRQRRSYVEKQLTLIESEADNLNRLIRKTERDYKTQRE 1147 R L + L SR+ + +E + +E + + RD RE Sbjct: 307 LNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASRE 358 Score = 33.5 bits (76), Expect = 0.008 Identities = 52/358 (14%), Positives = 113/358 (31%), Gaps = 29/358 (8%) Query: 414 ANDALEESQAQFEQTEIEIDAVRSQLADYQQALDAQQTRALQYQQAIAALEKAKTLCGLA 473 + E S ++ V+ + ++ + + + AL+ Sbjct: 34 VVNTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKD-------- 85 Query: 474 DLSVKNVEDYHAEFDAHAESLTETVLELEHKMSISEAAKSQFDKAYQLVCKIAGEMPRST 533 + + + +++ E K+ EA K+ +KA + + + Sbjct: 86 --HNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTAD-SAK 142 Query: 534 AWESAKELLREYPSQKLQAQQTPQLRTKLHELEQRYAQQQSAVKLLNDFNQRANLSLQTA 593 E + + + ++ L +L+ A Sbjct: 143 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 202 Query: 594 EELEDYHAEQEALIEDISARLSEQVENRSTLRQKRENLTALYDENARKAPAWLTAQAALE 653 A I+ + A + ++ L + E ++ K T +A Sbjct: 203 MNFST---ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIK---TLEAEKA 256 Query: 654 RLEQQSGERFEHSQDVMNFMQSQLVKERELTMQRDQLEQKRLHLDE--QISRLSQPDGSE 711 LE + E + + MNF + K + L ++ LE ++ L+ Q+ ++ Sbjct: 257 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRR 316 Query: 712 DPRLNMLAERFGGVLLSELYDDVTIEDAPYFSALYGPSRHAIVVRDLNAVREQLAQLE 769 D + A++ +L + I +A SR + + RDL+A RE QLE Sbjct: 317 DLDASREAKKQLEAEHQKLEEQNKISEA---------SRQS-LRRDLDASREAKKQLE 364 Score = 30.8 bits (69), Expect = 0.047 Identities = 34/268 (12%), Positives = 74/268 (27%), Gaps = 22/268 (8%) Query: 1021 TSELNEKLRQRLEQMQAQRDTQREQVRQKQSQFAEYNRVLIQLQSSYDSKYQLLNELIGE 1080 E +K ++ + + + E L + + L+E + Sbjct: 55 VQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASK 114 Query: 1081 ISDLGVRADDG-----AEERARIRRDELHQQLSTSRQRRSYVEKQLTLIESEADNLNRLI 1135 I +L R D + L + + + L A N + Sbjct: 115 IQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 174 Query: 1136 RKTERDYKTQRELVVAAKVSWCVVLRLSRNSDMEKRLNRRELAYLSADELRSMSDKALGA 1195 + + ++ + A R +++EK L + + A Sbjct: 175 SAKIKTLEAEKAALEA------------RQAELEKALEGAMNFSTADSAKIKTLEAEKAA 222 Query: 1196 LRTAVADNEYLRDSLR-VSEDSRKPENKVRFFIAVYQH----LRERIRQDIIKTDDPIDA 1250 L AD E + S + A + L + + + + Sbjct: 223 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 282 Query: 1251 IEQMEIELSRLTAELTGREKKLAISSES 1278 I+ +E E + L AE E + + + + Sbjct: 283 IKTLEAEKAALEAEKADLEHQSQVLNAN 310
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 2e-22 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 1 MTR-KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKI-KENPKLILLDWMLPGR 58 MT IL+ +D+ AIR ++ LS+ YDV S+ T I + L++ D ++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 59 SGIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAV 118 + + IKK +P+++++A++T I GA DY+ KPF L+ I Sbjct: 61 NAFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 119 WRRIYEQQSQ 128 + S+ Sbjct: 119 LAEPKRRPSK 128
>cloacin#Cloacin signature. Length = 551 Score = 32.4 bits (73), Expect = 8e-04 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 9/99 (9%) Query: 91 KKRQQALQTGQKIEPLTNHNYLKSVYETQKPHFAVIRSGKNQSETVKAQ-------QAED 143 +RQQ +E NY ++ E + + V R+ + Q++ V+ A + Sbjct: 304 NRRQQEWDATHPVEAA-ERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAAN 362 Query: 144 KKVQDAILYVERFVQLGQEEFVKNSPEYQIWLNHKAQKQ 182 K + DAI +++F + + +Q+ KAQ+ Sbjct: 363 KTLADAIAEIKQFNRFAHDPMAGGHRMWQM-AGLKAQRA 400
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 35.9 bits (82), Expect = 5e-04 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Query: 507 VAEGVTVLMDDTTNTKEKSEAIGSIAGATAGAIVGQALIPIPVVGAAVGSYLGGWLGEWL 566 + + +T ++ K+ +E GSI GA AI A++ + VV A VG LG L Sbjct: 385 IGKAITKALEGLGVDKKTAEMAGSIVGAIVAAI---AMVAVIVVVAVVGKGAAAKLGNAL 441 Query: 567 GSEVGEYLSDPEP 579 +GE + P Sbjct: 442 SKMMGETIKKLVP 454
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.003 Identities = 13/56 (23%), Positives = 22/56 (39%) Query: 1 MSNNDFLVLKNITKAFGKAVVIDNLDLTIKRGTMVTLLGPSGCGKTTVLRLVAGLE 56 L+ + K V ++ K V L G G GK+T++ + GL+ Sbjct: 565 YKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLD 620
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 29.8 bits (67), Expect = 0.015 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 8/57 (14%) Query: 4 FALIVGIVALAIFSFLYIQLYRV--------QSAINEQLAQQNIAVQSINLSLFSPA 52 + +V + +L I SFL + ++R+ Q+ + V +L P Sbjct: 15 YFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYNLMVPR 71
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 54.9 bits (132), Expect = 2e-10 Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 1/185 (0%) Query: 36 LSDIAQSFDMQTADTGLMMTVYAWTVLIMSLPAMLATGNMERKSLLIKLFIIFIVGHILS 95 L DIA F+ A T + T + T I + + + K LL+ II G ++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 96 VIAWNFW-ILLLARMCIALAHSVFWSITASLVMRISPKHKKTQALGMLAIGTALATILGL 154 + +F+ +L++AR + F ++ +V R PK + +A G++ A+ +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 155 PIGRIVGQLVGWRVTFGIIAVLALSIMFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWL 214 IG ++ + W I + +++ FL+ L + K I + L++ + L Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFML 216 Query: 215 YVTTA 219 + T+ Sbjct: 217 FTTSY 221
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 32.0 bits (72), Expect = 0.006 Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 166 EKMENADENDRTSEEEQDEWEQEFDFDSEEDTALIDDALDEELEEEQDK 214 K NA+ + +Q E+EFD+ +E AL++ EL E + K Sbjct: 388 SKKNNAEMKSKQMSTDQMTSEKEFDYYTETLKALLEKEDSAELNENEKK 436
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 44.4 bits (105), Expect = 4e-07 Identities = 65/347 (18%), Positives = 120/347 (34%), Gaps = 44/347 (12%) Query: 1 MKKTLAALIVGAFAASAANAAVVYNNEGTNVELGGRLSIIAEQSNSTVDNQKQQHGALRN 60 MKK+L AL + A +A +Y VE ++ Q+ S + + Sbjct: 1 MKKSLIALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTG-----IVD 55 Query: 61 QGSRFHIKATHNFGDGFYAQGYLETRFVTKASENGSDNFGDITSKYAYVTLGNKAFGEVK 120 GS+ K + G+G A +E KAS G+D ++ +++ L FG+++ Sbjct: 56 LGSKIGFKGQEDLGNGLKAIWQVE----QKASIAGTD--SGWGNRQSFIGLK-GGFGKLR 108 Query: 121 LGRAKTIADGITS--AEDKEYGVLNNSDYIPTSGNTVGYTFKGID--GLVLGANYLLAQK 176 +GR ++ D + L + + + + GL Y L Sbjct: 109 VGRLNSVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDN 168 Query: 177 RE-----------------------GAKNTNKQPNDKAGEVRIGEINNGIQVGAKYDAND 213 GA + Q + E ++ + YD + Sbjct: 169 AGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVN----IEKYQIHRLVSGYDNDA 224 Query: 214 IVAKIAYGRTNYKYNEADEHTQQLNGVLATLGYRFSDLGLLVSLDSGYAKTKNYKTKHEK 273 + A +A + + K E + V ATL YRF ++ VS G+ + + + Sbjct: 225 LYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDATNYNND 284 Query: 274 RYFVSPGFQYELMEDTNVYGNFKYERTSVDQGEKTREQAVLFGVDHK 320 V G +Y+ + T+ + + + K A G+ HK Sbjct: 285 YDQVVVGAEYDFSKRTSALVSAGWLQEG-KGESKFVSTAGGVGLRHK 330
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 33.9 bits (78), Expect = 9e-04 Identities = 12/29 (41%), Positives = 19/29 (65%) Query: 339 PARAIGIDDRLGSVEKGKIANLAVFTPNY 367 PA A G+ +GS+E GK A+L ++ P + Sbjct: 413 PAIAHGLSHEIGSLEVGKRADLVLWNPAF 441
>PF05860#haemagglutination activity domain. Length = 117 Score = 94.5 bits (235), Expect = 4e-25 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Query: 38 NVSTIGNKMTIDQKTPTTQ---IDWHSFDIGQNKEVEFKQPDANSVAYNRVTGGNASQIQ 94 N++T GN I++ T + F + + F P +RVTGG+ S I Sbjct: 14 NITTEGNTRIIERGTQAGSNLFHSFQEFSVPTSGTAFFNNPTNIQNIISRVTGGSVSNID 73 Query: 95 GKLTANGK--VYLANPNGVIITQGAEINVAGLFATTK 129 G + AN ++L NPNG+I Q A +++ G F + Sbjct: 74 GLIRANATANLFLINPNGIIFGQNARLDIGGSFVGST 110
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 27.5 bits (61), Expect = 0.033 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 31/171 (18%) Query: 1 MSLFALFYMLFA-------YLLGSISSAILICRIAGLPDPRQN---GSHNPGATNVLRIG 50 MS+ +F+MLF ++ +S I + I + DP + G + P VL G Sbjct: 207 MSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGG 266 Query: 51 NRKSALAVLIFDMLKGMIPVWAGYYLGLTQFELGMVALGACLGHIFPIFFQFKGGK---- 106 +A + M+P L+ E+G V + G + I F + GG Sbjct: 267 IIFGTVAGFVS-----MVPYMMKDVHQLSTAEIGSVII--FPGTMSVIIFGYIGGILVDR 319 Query: 107 ----GVATAFGAIAPISWAVAG------SMFGTWIFVFLVSGYSSLSAVIS 147 V +S+ A S F T I VF++ G S VIS Sbjct: 320 RGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIS 370
>PF06580#Sensor histidine kinase Length = 349 Score = 44.5 bits (105), Expect = 6e-07 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 21/157 (13%) Query: 423 LRELLATFRLTIQEANLQL-ALKQVIDSLRSQTTMQ-------MNVNCQLPSQSLNPQQL 474 L L R +++ +N + +L + + S + + Q+ ++ Q Sbjct: 197 LTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVP 256 Query: 475 VHVLQIVREATTNAIKH-----SQGTVIEISARINAEGEYEILVEDDGVGIPNLEEPEGH 529 ++Q + E N IKH QG I + + G + VE+ G + Sbjct: 257 PMLVQTLVE---NGIKHGIAQLPQGGKILLKGTKD-NGTVTLEVENTGSLALKNTKESTG 312 Query: 530 YGLNIMAERCRQL---NAQLHIHRREQGGTQVKITLP 563 GL + ER + L AQ+ + +QG + +P Sbjct: 313 TGLQNVRERLQMLYGTEAQIKL-SEKQGKVNAMVLIP 348
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 27.9 bits (62), Expect = 0.049 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%) Query: 4 IGKIIGVFLGWKVGGFFGAIAGLILGSIADKKLYELGSVSSS 45 IG +I +F G FG I G+++ + +G S Sbjct: 294 IGSVI-IFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLS 334
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.3 bits (84), Expect = 2e-04 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 53/192 (27%) Query: 51 LEESAVENEEKLPTPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGK 110 + A+ ++ P+ E + ++G+ A +Y R + Sbjct: 114 IIGRALAEPKRRPSKLEDDSQDGMPLVGRSAA----MQEIYRVLAR---------LMQTD 160 Query: 111 SNILLIGPTGSGKTLLAQTL---ARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNC 167 +++ G +G+GK L+A+ L +R N PF + + ++++ L Sbjct: 161 LTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIP---------RDLIESELFGH 211 Query: 168 EYDT------------EKAEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEG 215 E E+AE G +++DEI + Q LL++++ Sbjct: 212 EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMP--------------MDAQTRLLRVLQQ 257 Query: 216 TIASIPPQGGRK 227 GGR Sbjct: 258 G--EYTTVGGRT 267
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 118 bits (298), Expect = 4e-38 Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 1/105 (0%) Query: 2 IFFAAAAIGNIYFQQIYSLPIRVIGMAIALVIAFILAAITNQGTKARAFFNDSRTEARKV 61 A +GN ++ I LP+R + + I + A +A +T +G AF ++RTE RKV Sbjct: 24 ALLLVAIVGNYLYRDIM-LPLRALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKV 82 Query: 62 VWPTRAEARQTTLIVIGVTMIASLFFWAVDSIIVTVINFLTDLRF 106 +WPTR E TTLIV VT + SL W +D I+V +++F+T LRF Sbjct: 83 IWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGLRF 127
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 319 bits (818), Expect = e-113 Identities = 106/253 (41%), Positives = 156/253 (61%), Gaps = 11/253 (4%) Query: 4 KTILTAL-LSAIALTGCANNNDTKQVSERNDSLEDFNRTMWKFNYNVIDRYVLEPAAKGW 62 K L+AL L L GCA++ +Q R+D LE FNRTM+ FN+NV+D Y++ P A W Sbjct: 2 KLRLSALALGTTLLVGCASSGTDQQ--GRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAW 59 Query: 63 NNYVPKPISSGLAGIANNLDEPVSFINRLIEGEPKKAFVHFNRFWINTVFGLGGFIDFAS 122 +YVP+P +GL+ NL+EP +N ++G+P + VHF RF++NT+ G+GGFID A Sbjct: 60 RDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAG 119 Query: 123 -ASKELRIDNQRGFGETLGSYGVDAGTYIVLPIYNATTPRQLTGAVVDAAYMYPFWQWVG 181 A+ +L+ FG TLG YGV G Y+ LP Y + T R G + DA +YP W+ Sbjct: 120 MANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADA--LYPVLSWLT 177 Query: 182 GPWALVKYGVQAVDARAKNLNNAELLRQAQDPYITFREAYYQNLQFKVNDGKLVESK--- 238 P ++ K+ ++ ++ RA+ L++ LLRQ+ DPYI REAY+Q F N G+L + Sbjct: 178 WPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGELKPQENPN 237 Query: 239 -ESLPDDILKEID 250 +++ DD LK+ID Sbjct: 238 AQAIQDD-LKDID 249
>PF01206#SirA family protein Length = 76 Score = 91.7 bits (228), Expect = 1e-28 Identities = 25/71 (35%), Positives = 42/71 (59%) Query: 8 QTLDTLGLRCPEPVMLVRKNIRHLNDGEILLIIADDPATTRDIPSFCQFMDHTLLQCEVE 67 Q+LD GL CP P++ +K + +N GE+L ++A DP + +D SF + H LL+ + E Sbjct: 6 QSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKEE 65 Query: 68 KPPFKYWVKRG 78 + + +KR Sbjct: 66 DGTYHFRLKRA 76
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.9 bits (137), Expect = 2e-12 Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 1 MRQAKTDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAH 60 +Q + + I RL +++G++ S+ ++AK A V G IY +FK+K +L + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 RVFSMFMATLEKDFDET 77 S + + Sbjct: 65 LSESNIGELELEYQAKF 81
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.5 bits (126), Expect = 1e-09 Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 74 GAVSQVLVQNGQNVKKGEVLVELDSSVERANLQAAQAQLSALRQTYQRYVGLLNS 128 V +++V+ G++V+KG+VL++L + A+ Q+ L R RY L S Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRS 159 Score = 44.0 bits (104), Expect = 7e-07 Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 39/216 (18%) Query: 102 RANLQAAQAQLSALRQTYQRYVGLLNSNAVSRQEMDNAKAAYDAQVASIESLKAAIERRK 161 + + +A+ + + Q ++ + ++ + + + Sbjct: 279 ESEILSAKEEYQLVTQLFKNEI---------LDKLRQTTDNIGLLTLELAKNEERQQASV 329 Query: 162 IVAPFDGKAGIVKIN-VGQYVNVGT---EIVRVEDTSSMKVDFALSQNDLDKLHIGQRVT 217 I AP K +K++ G V IV +DT ++V + D+ +++GQ Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDT--LEVTALVQNKDIGFINVGQNAI 387 Query: 218 ATTDARLGETFSARITAIEPAINSSTGLVDVQATFDPEDGHKLLSGMFSRLRIALPTETN 277 +A F + +++ A D G + I++ Sbjct: 388 IKVEA-----FPYTRY---GYLVGKVKNINLDAIEDQRLGL------VFNVIISIEENCL 433 Query: 278 QVVVPQVAISYNMYGE----------IAYLLEPLSE 303 + +S M I+YLL PL E Sbjct: 434 STGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEE 469
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 905 bits (2340), Expect = 0.0 Identities = 324/1044 (31%), Positives = 538/1044 (51%), Gaps = 47/1044 (4%) Query: 11 DIFIRRPVLAVSISLLMIILGLQAISKLAVREYPKMTTTVITVSTAYPGADANLIQAFVT 70 + FIRRP+ A +++++++ G AI +L V +YP + ++VS YPGADA +Q VT Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 71 SKLEESIAQADNIDYMSSTSAPS-SSTITIKMKLNTDPAGALADVLAKVNAVKSALPNGI 129 +E+++ DN+ YMSSTS + S TIT+ + TDP A V K+ LP + Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 130 EDPSVSSS-SGGSGIMYISFRSKKLDSSQ--VTDYINRVVKPQFFTIEGVAEVQVFGAAE 186 + +S S S +M F S ++Q ++DY+ VK + GV +VQ+FGA + Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-Q 181 Query: 187 YALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDN------GYYVSYRNKVETTTK 240 YA+RIWLD + L+ V++ L N Q AAG G ++ +T K Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 241 SVEQLSNLIISSNGD-DLVRLRDIATVELNKENDNSRATANGAESVVLAINPTSTANPLT 299 + E+ + + N D +VRL+D+A VEL EN N A NG + L I + AN L Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 300 VAEKIRPLYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIGS 359 A+ I+ ++ P M+ YD T + SIHEV+KT+ EA ++V +V+ +F+ + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 360 FRAILIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENIDRHIK 419 RA LIP +A+P+ L+G +L +F +SIN +T+ ++LAIGL+VDDAIVV+EN++R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 420 AGETPFRAAII-GTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFIS 478 + P + A +I ++ + + L AV+ PMA GG TG ++++F++T+ A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 479 GVVALTLSPMMSSKLLKSNAKP---------TWMEERVEHTLGKVNRVYEYMLDLVMLNR 529 +VAL L+P + + LLK + W +H+ VN + ++ Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHS---VNHYTNSVGKILGSTG 538 Query: 530 KSMLAFAVVIFSTLPFLFNSLSSELTPNEDKGAFIAIGNAPSSVNVDYIQNAMQP----Y 585 + +L +A+++ + LF L S P ED+G F+ + P+ + Q + Y Sbjct: 539 RYLLIYALIVAGMV-VLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYY 597 Query: 586 MKNVMETPEVSF---GMSIAGAPTSNSSLNIITLKDWKERSRK---QSAIMNEINEKAKS 639 +KN E F G S +G N+ + ++LK W+ER+ A+++ + Sbjct: 598 LKNEKANVESVFTVNGFSFSG-QAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGK 656 Query: 640 IPEVSVSAFNIPEIDTG--EQGPPVSIVLKTAQDYKSLANTAEKFLS-AMKASGKFIYTN 696 I + V FN+P I G ++ + + +L + L A + + Sbjct: 657 IRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 697 LDLTYDTAQMTISVDKEKAGTYGITMQQISNTLGSFLSGATVTRVDVDGRAYKVISQVKR 756 + DTAQ + VD+EKA G+++ I+ T+ + L G V GR K+ Q Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 757 DDRLSPESFQNYYLTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGISS 816 R+ PE Y+ ++NG+ VP S+ + L R++ L S EI PG SS Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 817 GDAIAWLQQQATDNLPQGYTFDFKSEARQLVQEGNALAVTFALAVIIIFLVLAIQFESIR 876 GDA+A ++ A+ LP G +D+ + Q GN A++ +++FL LA +ES Sbjct: 837 GDAMALMENLAS-KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895 Query: 877 DPMVIMISVPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAK 936 P+ +M+ VPL + G L++ + ++Y VGL+T +GL K+ IL+ E AK Sbjct: 896 IPVSVMLVVPLGIVGVLLAAT------LFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 937 EEQLNHGKTRIEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAG 996 + GK +EA A ++RLRPILMT+ A + G++PL + GAG+ ++ ++GI ++ G Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 997 LSIGTIFTLFVLPVVYSYVATEHK 1020 + T+ +F +PV + + K Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRCFK 1033
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 143 bits (362), Expect = 1e-39 Identities = 91/397 (22%), Positives = 172/397 (43%), Gaps = 17/397 (4%) Query: 23 LSLATFMQVLDSTIANVAIPTIAGDLGASFSQGTWVITSFGVANAISIPITGWLAKRFGE 82 L + +F VL+ + NV++P IA D + WV T+F + +I + G L+ + G Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 83 VRLFLVSTFLFVVSSWLCGIADSLEALIIF-RVIQGAVAGPVIPLSQSLLLNNYPPEKRG 141 RL L + S + + S +L+I R IQGA A L ++ P E RG Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138 Query: 142 MALAFWSMTIVVAPIFGPILGGWISDNIHWGWIFFINVPIGLSVVLISWKILGSRESEIV 201 A + + GP +GG I+ IHW + + +P+ ++++ + + + ++ + Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPM-ITIITVPFLMKLLKKEVRI 195 Query: 202 HQPIDKVGLVLLVLGVGCLQLMLDQGREQDWFNSNEIIILAVVAVVCLIALVIWELTDDN 261 D G++L+ +G+ L F ++ I +V+V+ + V + Sbjct: 196 KGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTD 245 Query: 262 PVVDISLFHSRNFSVGCLCTSLAFLIYLGSVVLIPLLLQQVFHY-TATWAGLAASPVGLF 320 P VD L + F +G LC + F G V ++P +++ V TA + P + Sbjct: 246 PFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMS 305 Query: 321 PILLSPIIGRFGYKIDMRILVTISFIVYAITFYWRAVTFEPSMTFVDVALPQLVQGLAVS 380 I+ I G + ++ I +++F + E + F+ + + ++ GL+ + Sbjct: 306 VIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFT 365 Query: 381 CFFMPLTTITLSGLPAHKMASASSLFNFLRTLAGSVG 417 ++TI S L + + SL NF L+ G Sbjct: 366 K--TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTG 400
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 79.9 bits (197), Expect = 2e-18 Identities = 43/287 (14%), Positives = 87/287 (30%), Gaps = 35/287 (12%) Query: 91 ELDDTNAKLSFEQAKSNLANAVRQVE----QLGFTVQQLQSAVHANEISLAQAQGNLARR 146 E + ++ S N Q E + + + ++ E + L Sbjct: 181 EEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDF 240 Query: 147 VQLEKMGAIDKESFQHAKEAVELAKANLNASKNQLAANQALLRNVPLR------------ 194 L AI K + + A L K+QL ++ + + Sbjct: 241 SSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI 300 Query: 195 ------EQPQIQNAINSLKQAWLNLQRTKIRSPIDGYVARRNVQ-VGQAVSVGGALMAVV 247 I L + Q + IR+P+ V + V G V+ LM +V Sbjct: 301 LDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIV 360 Query: 248 -SNEQMWLEANFKETQLTNMRIGQPVKIHFDLYGKNK--EFDGVINGIEMGTGNAFSLLP 304 ++ + + A + + + +GQ I + + + G + I + Sbjct: 361 PEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA-------I 413 Query: 305 SQNATGNWIKVVQRVPVRIKLDPQQFTETPLRIGLSATAKVRISDSS 351 G V+ + + PL G++ TA+++ S Sbjct: 414 EDQRLGLVFNVIISIEENCLSTGNK--NIPLSSGMAVTAEIKTGMRS 458
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 36.0 bits (83), Expect = 2e-04 Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 22/133 (16%) Query: 129 IPVINENDAVATAEIKVGDNDNLSALVAILVQAEQLYLLTDQQGLFDSDPRKNPEAKLIP 188 +PVI E+ + E V D D +A V A+ +LTD G E L Sbjct: 197 VPVILEDGEIKGVE-AVIDKDLAGEKLAEEVNADIFMILTDVNGAA-LYYGTEKEQWLRE 254 Query: 189 V-VEQITDHIRSIAGGSGTNLGTGGMMTKIIAADVATRSGIETIIAPGNRPNVIADL--- 244 V VE++ + + G M K++AA G +IA L Sbjct: 255 VKVEELRKYYEE------GHFKAGSMGPKVLAAIRFIEW--------GGERAIIAHLEKA 300 Query: 245 --AYEQNIGTKFI 255 A E GT+ + Sbjct: 301 VEALEGKTGTQVL 313 Score = 33.6 bits (77), Expect = 9e-04 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Query: 3 KKTIVVKFGTSTLTQGSPKLNSPHMMEIVR----QIAQLHNDGFRIVIV 47 K +V+ G + L Q K + MM+ VR QIA++ G+ +VI Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVIT 50
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 98.7 bits (246), Expect = 7e-26 Identities = 78/348 (22%), Positives = 131/348 (37%), Gaps = 68/348 (19%) Query: 2 IIVTGGAGFIGSNIVKALNDLGRKDILVVDNLKD--------------GTKFANLVDLDI 47 +VTG AGFIG ++ K L + G ++ +DNL D +D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 48 ADYCDKEDFIASIIAGDEFGDIDAVFHEGACSATTEWDGKYIMHNNYEYSK-------EL 100 AD + + + A F + VF A +Y + N + Y+ + Sbjct: 62 ADR----EGMTDLFASGHF---ERVFISPHRLAV-----RYSLENPHAYADSNLTGFLNI 109 Query: 101 LHYCLDREIP-FFYASSAATYGDTKV--FREEREFEGPLNVYGYSKFLFDQYVRNILPEA 157 L C +I YASS++ YG + F + + P+++Y +K + Sbjct: 110 LEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY 169 Query: 158 KSPVCGFRYFNVYGPRENHKGSMASVAFHLNNQILKGENPKLFAGSEHFRRDFVYVGDVA 217 P G R+F VYGP + MA F +L+G++ ++ + +RDF Y+ D+A Sbjct: 170 GLPATGLRFFTVYGPWG--RPDMA--LFKFTKAMLEGKSIDVYNYGKM-KRDFTYIDDIA 224 Query: 218 AVNI------------WCWQNGISG-------IYNLGTGNAESFRAVADAVVKFHG-KGE 257 I W + G +YN+G + A+ G + + Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284 Query: 258 IETIPFPEHLKSRYQEYTQADLTKLRS-TGYDKPFKTVAEGVTEYMAW 304 +P T AD L G+ P TV +GV ++ W Sbjct: 285 KNMLPLQPG----DVLETSADTKALYEVIGF-TPETTVKDGVKNFVNW 327
>SECA#SecA protein signature. Length = 901 Score = 27.5 bits (61), Expect = 0.028 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 11/37 (29%) Query: 75 TSPA-INSLAKEGYQVVSVALRSGNEADVNDYLSKND 110 T PA +N+L +G VV+V NDYL++ D Sbjct: 113 TLPAYLNALTGKGVHVVTV----------NDYLAQRD 139
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.5 bits (87), Expect = 1e-04 Identities = 39/178 (21%), Positives = 58/178 (32%), Gaps = 53/178 (29%) Query: 194 DLTDIIGQ----QHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLPEMTDLEAIE 249 D ++G+ Q R L L+ G GTGK ++A A+ Sbjct: 135 DGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVA-------------RALH 181 Query: 250 TASVTSLVQNELNFHNWKQRPFRAPHHSASMP------ALVG-------GGTIPKPGEIS 296 + PF A + A++P L G G G Sbjct: 182 DYG------------KRRNGPFVAI-NMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFE 228 Query: 297 LATNGVLFLDEL----PEFERKVLDALRQPLESGEIIISRANAKIQFPARFQLVAAMN 350 A G LFLDE+ + + ++L L+ GE I+ R +VAA N Sbjct: 229 QAEGGTLFLDEIGDMPMDAQTRLLRV----LQQGEYTTVGGRTPIRSDVR--IVAATN 280
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.011 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 54 VVGESGCGKSTLARAI 69 + GESG GK +ARA+ Sbjct: 165 ITGESGTGKELVARAL 180
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 31.0 bits (70), Expect = 0.014 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 10/94 (10%) Query: 421 SGSNWTIFSSFLGAIGSFFSGSNTVSNLTFGSV--QLSTAETTGISVALVLALQSVGGAM 478 + S I ++ GA G+ + S + S ++ G L+ AL S Sbjct: 379 TNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTK-- 436 Query: 479 GNMVCINNIVAVSSVLNISNQEGTIIKKTIIPMI 512 N+I+A S++ + N E T +P++ Sbjct: 437 ------NDILATPSIVTLDNMEATFNVGQEVPVL 464
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.024 Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 22/162 (13%) Query: 260 PSKVVSLGDTVEVMVLEIDEERRRISLG-LKQCKANPWTQFADTHNKGDKVTGKIKSITD 318 + T ++ ++ + +I+ G L A P Q N + K+ + Sbjct: 190 ADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQL----NASIIAQTRFKNPEE 245 Query: 319 FGIFIGLEGGIDGLVHLSDISWSISGEEAVRQYKKGDEVSAVVLAV------------DA 366 FG +V L D++ G E + + A L + A Sbjct: 246 FGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKA 305 Query: 367 VKERISLGIKQLEED-----PFNNFVAINKKGAVVSATVVEA 403 +K +++ + P++ + V T+ EA Sbjct: 306 IKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEA 347
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 107 bits (269), Expect = 2e-34 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 2 TKSELMEKLSAKQPTLPAKEIENMVKGILEFISQSLENGDRVEVRGFGSFSLHHRQPRLG 61 K +L+ K+ A+ L K+ V + +S L G++V++ GFG+F + R R G Sbjct: 3 NKQDLIAKV-AEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGDSVNLSAKSVPYFKAGKELKARV 90 RNP+TG+ + + A VP FKAGK LK V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>SECA#SecA protein signature. Length = 901 Score = 33.3 bits (76), Expect = 1e-04 Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 52 DLSDEELKKLAAELKKRCGCGGAVKNGIIEIQGEKRDLLKQLLEQKGFKVKLSGG 106 LSDEELK AE + R G ++N I E R+ K++ + F V+L GG Sbjct: 37 KLSDEELKGKTAEFRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGG 91