>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.6 bits (71), Expect = 0.020 Identities = 35/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNENIILNVNFIGEEVLGEEEAAVRFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + E + F+ E+ + + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGIPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 39.7 bits (92), Expect = 9e-06 Identities = 40/212 (18%), Positives = 70/212 (33%) Query: 4 LSSTKEKLEARIDLLESEIIDLSTEKENLVAETSKLKDANNQLRQKNDKLFTTKEKLTKE 63 + + ++I LE+ DL E + ++ L + L K L K Sbjct: 104 NDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKA 163 Query: 64 NTELENRNAELSKEKENLSVKISMLENANDQLWQAKENLTKENTELASKNTVLTEKNAEL 123 N + S + + L + + LE +L +A E +T ++K L + A L Sbjct: 164 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL 223 Query: 124 KNENDKFNHQVIALNNEQGSLKQERAQLQDACGFLEETCANLEKDNQQLTDKLKKLESVQ 183 + N + + L+ LE A LEK + + + Sbjct: 224 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 283 Query: 184 KNLENTNAQLVQAKEKIAEEKTELEREMARLK 215 K LE A L K + + L L+ Sbjct: 284 KTLEAEKAALEAEKADLEHQSQVLNANRQSLR 315 Score = 39.3 bits (91), Expect = 9e-06 Identities = 43/228 (18%), Positives = 66/228 (28%) Query: 4 LSSTKEKLEARIDLLESEIIDLSTEKENLVAETSKLKDANNQLRQKNDKLFTTKEKLTKE 63 L E ++I L EK L A + L+ A + + L E Sbjct: 125 LEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAE 184 Query: 64 NTELENRNAELSKEKENLSVKISMLENANDQLWQAKENLTKENTELASKNTVLTEKNAEL 123 LE R AEL K E + L K L +L + Sbjct: 185 KAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 244 Query: 124 KNENDKFNHQVIALNNEQGSLKQERAQLQDACGFLEETCANLEKDNQQLTDKLKKLESVQ 183 + + AL Q L++ + LE + L + LE Sbjct: 245 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQS 304 Query: 184 KNLENTNAQLVQAKEKIAEEKTELEREMARLKGLEDMEAKSEIDLHNK 231 + L L + + E K +LE E +L+ + S L Sbjct: 305 QVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD 352
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 26.5 bits (58), Expect = 0.012 Identities = 11/29 (37%), Positives = 18/29 (62%) Query: 32 LSSHFHNLGSWQDAKRDNFSEVIDNLRST 60 ++ +FHN G W D + NF + ++RST Sbjct: 254 VARYFHNGGQWADDAKLNFGDGPFSVRST 282
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1030 bits (2666), Expect = 0.0 Identities = 353/560 (63%), Positives = 438/560 (78%), Gaps = 4/560 (0%) Query: 1 MYGPTTGDKVRLGDTELIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NPSKEELDLII 59 M+GPT GDKVRL DTEL EVE D+T +GEE+KFGGGK +R+GM QS +D +I Sbjct: 13 MFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTREGGAVDTVI 72 Query: 60 TNALIIDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTA 119 TNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE +AGEG IVTA Sbjct: 73 TNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVIAGEGKIVTA 130 Query: 120 GGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYS 179 GG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ M+ AA+ + Sbjct: 131 GGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIARMIEAADAFP 190 Query: 180 MNLGFLGKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKYDVQVAIHTD 239 MNL F GKGNAS +L + + GA K+HEDWGTTP+AI+ L VAD+YDVQV IHTD Sbjct: 191 MNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEYDVQVMIHTD 250 Query: 240 TLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNT 299 TLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STNPT P+TVNT Sbjct: 251 TLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTNPTRPYTVNT 310 Query: 300 EAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVG 359 AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SSDSQAMGRVG Sbjct: 311 LAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISSDSQAMGRVG 370 Query: 360 EVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGK 419 EV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S +GS+EVGK Sbjct: 371 EVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSHEIGSLEVGK 430 Query: 420 VADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAHHGKAKYDAN 479 ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF +G+++ +++ Sbjct: 431 RADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGAYGRSRTNSS 490 Query: 480 ITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNPETYHVFVDG 538 +TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+PETY V DG Sbjct: 491 VTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDPETYEVRADG 550 Query: 539 KEVTSKPANKVSLAQLFSIF 558 + +T +PA + +AQ + +F Sbjct: 551 ELLTCEPATVLPMAQRYFLF 570
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.4 bits (76), Expect = 0.001 Identities = 11/84 (13%), Positives = 18/84 (21%), Gaps = 1/84 (1%) Query: 57 PTPSTPSPTKKDETSGTPTPSTPSPAKKDETSGTP-TPSTPSPAKKDETSGGTPSSSGST 115 P P P P P K S + + ST Sbjct: 82 PIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSST 141 Query: 116 VASQLTKDTATVDGFSKVSVNSMN 139 + +K +V + + Sbjct: 142 ATAATSKPVTSVASGPRALSRNQP 165 Score = 33.4 bits (76), Expect = 0.001 Identities = 13/72 (18%), Positives = 18/72 (25%) Query: 60 STPSPTKKDETSGTPTPSTPSPAKKDETSGTPTPSTPSPAKKDETSGGTPSSSGSTVASQ 119 P P + E P P P A P P K + + Sbjct: 68 PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPAS 127 Query: 120 LTKDTATVDGFS 131 ++TA S Sbjct: 128 PFENTAPARPTS 139
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 31.5 bits (71), Expect = 0.010 Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 10/138 (7%) Query: 452 INPNNPTNDDHNDDHMDANTTDTGNANDATTDTTDDKDASGMNNTDTGNTDTGNNDMNNT 511 + + D + + N + D G+ + + Sbjct: 290 ALIFSVWDAGGTDT---FDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAIGG 346 Query: 512 DTGNTDMGNTDTGNTDMGNGNDM-----GDDMNNANDMNDDM--GNGNDDMGDMGDMNDD 564 + +GN+ G GND+ G D D G+G D D D Sbjct: 347 SGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAYDWIAD 406 Query: 565 MGGGDDMGDMGDMGDMGN 582 G D D+ + G Sbjct: 407 FQKGIDKIDLSAFRNEGQ 424
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 0.001 Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 7/168 (4%) Query: 3 KKANEEKAL-KKAKTEAKQEAKTEAKENKGNSKAKETKIKEAKVKENKEAKIKEGKAKEI 61 + A E A ++ EAK K + N+ ETK + + KE KAK Sbjct: 1056 QDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVE 1115 Query: 62 KAKETDPTKKLS------FNEALEELFADSLSDCVSYESIIQISTKVPTLAQIKKIKELC 115 K + K S + A+ + +I + ++ T A ++ + Sbjct: 1116 TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKET 1175 Query: 116 QKYQKRLVSSSEYAKKLNAIDKIKNTEEKQKVLDEELEDGYDFLKEKD 163 ++ V+ S N++ + + + K + Sbjct: 1176 SSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.1 bits (65), Expect = 0.019 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 19/77 (24%) Query: 185 VQKISFSYLKEVLVVMRTGGASTKGFKSLLLRNKENIRAC-----KENGIQANVFSMLLK 239 + K++ E+++ +R G FK L+ + R K N I+A +F M+L Sbjct: 24 IDKVNQPEKDEIILNIRKGR---LSFKLLISSSSNYPRIHLTDLTKPNPIKAPMFCMVL- 79 Query: 240 YPRKVMGLFKRKRLKRG 256 RK + Sbjct: 80 ----------RKYISNA 86
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 224 bits (572), Expect = 2e-78 Identities = 59/144 (40%), Positives = 89/144 (61%), Gaps = 7/144 (4%) Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMASLHSLEHLVAEI 67 ++SF +DHT++ AP VRVA + GD I +D+RF PN+D + +H+LEHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 68 IRNHAN----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPAS 120 +RNH N ++D SPMGC+TGFY++++ + ++ + M+DVLK ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 121 NEKQCGWAANHTLEGAKNLASAFL 144 NE QCG AA H+L+ AK +A L Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNIL 146
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 57.0 bits (137), Expect = 1e-11 Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSSYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKSLYNSVKQDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNDGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + ++ A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHHIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L +++IR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSHLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.8 bits (67), Expect = 0.020 Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 1/153 (0%) Query: 23 VLIPLLILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFL 82 V +P + + P + + A ++ + G+ + LS + ++ + + + Sbjct: 35 VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV 94 Query: 83 ICYFDSIPFFWLWIWRFIAGVASSALMILVAPLSLPYVKENKKALVGGLIFSAVGIGSVF 142 I + F L + RFI G ++A LV + Y+ + + GLI S V +G Sbjct: 95 IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 143 SGFVLPWISSYNIKWAWIFLGGSCLIAFILSLV 175 + I+ Y I W+++ L I + L+ Sbjct: 155 GPAIGGMIAHY-IHWSYLLLIPMITIITVPFLM 186
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 2e-19 Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 4/99 (4%) Query: 1 MRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRAD 60 +R ++ LSR GY DV + W + A D +++TD MP+ N DL+ +++ Sbjct: 15 IRTVLNQALSRAGY-DVRITSNAATLWRWIAA-GDGDLVVTDVVMPDENAFDLLPRIKK- 71 Query: 61 NRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQ 99 ++P+++++ + I A + G +Y+ KPF Sbjct: 72 -ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 121 bits (305), Expect = 6e-38 Identities = 28/165 (16%), Positives = 66/165 (40%), Gaps = 16/165 (9%) Query: 1 MFGMGFFEILVVLVVAIIFLGPEKFPQAVVDMVKFFRAVKKTLNDAKDTLDKEINIEEIK 60 MF +GF E+L+V ++ ++ LGP++ P AV + + RA++ ++ L +E+ ++E + Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ 60 Query: 61 KETLEYQKLFENKIEDLKGVKIEELEDAKVVAEREIKSVQELMQDYKQSLENNAPPKH-- 118 + +K + +L +++ + AE +S + K S E + Sbjct: 61 DSLKKVEKA---SLTNLTPELKASMDELRQAAESMKRSYVANDPE-KASDEAHTIHNPVV 116 Query: 119 ----------SNEEISNEEVSHNEPPKEVKLATDNNTKEHDKEKE 153 + + S + P+ + + + Sbjct: 117 KDNEAAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKTA 161
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 100 bits (249), Expect = 2e-27 Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 19/261 (7%) Query: 10 KTLVISGATRGIGKAILYRFAQSGVNI-AFTYNKNVEEANKIIEDVEQKYSIKAKAYPLN 68 K I+GA +GIG+A+ A G +I A YN E E ++ A+A+P + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARH---AEAFPAD 65 Query: 69 VLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATVLA 128 V + E+ +I+ + +D ++ A + L + ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLR------PGLIHSLSDEEWEATFSVNSTG 119 Query: 129 FVVGTQEAAKRMQKVGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLGEFN 188 ++ +K M G+IV++ S V + A + +SK A K ++L E+N Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 189 IRVNAVSGGPIDTDALKAF--PDYVEIK------EKVEEQSPLKRMGNPNDLAGAAYFLC 240 IR N VS G +TD + + + E + PLK++ P+D+A A FL Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 241 DETQSGWLTGQTIVVDGGTTF 261 Q+G +T + VDGG T Sbjct: 240 SG-QAGHITMHNLCVDGGATL 259
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.009 Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 33 LLGESGAGKSTILRILAGLEVVSSGYIEV 61 L G G GKST++ L GL+ S + ++ Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 198 bits (505), Expect = 1e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPNNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.8 bits (67), Expect = 0.018 Identities = 32/248 (12%), Positives = 83/248 (33%), Gaps = 48/248 (19%) Query: 6 DRFGRKNMFMLSILLMVIPTFMLALMPTFDHFVSFGINSMGLAPENAHYLGYIAPIFLVF 65 DRFGR+ + ++S+ + ++A P Y+G Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVL----------------YIG--------- 102 Query: 66 VRVCQGVAVGGELPGAWVFVQEHAPQGQKNTFVGFLTASVVSGILLGSLVYIGIYMVFDK 125 R+ G+ G A ++ + ++ GF++A G++ G + +G M Sbjct: 103 -RIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPV--LGGLM---- 154 Query: 126 AVVEDWAWRVAFGLGGIFGIISVYLRRFLEETPVFQQMKQDNALVKFPLKEVFKDSLFGI 185 ++ F ++ FL + + PL + Sbjct: 155 ---GGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTV 211 Query: 186 LVSMLITWVLTACI-----LIFILFIPNFTLMHPNFNFTPFEKTY-FQILGLVSIVSSII 239 + +++ + + + ++++F + F++ G++ ++ + Sbjct: 212 VAALMAVFFIMQLVGQVPAALWVIFGED------RFHWDATTIGISLAAFGILHSLAQAM 265 Query: 240 LTGFLADK 247 +TG +A + Sbjct: 266 ITGPVAAR 273
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 46.2 bits (109), Expect = 3e-07 Identities = 31/206 (15%), Positives = 63/206 (30%), Gaps = 7/206 (3%) Query: 248 EKKEGKIDARENKREIKQEAIKEPKKANQNAQNAPTLEEKNYQKAEQKLDAKEERRRLRD 307 + + A +K+E K E AQN +E + + Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 308 ERKKTRATKKAMEFEEREKEHQERDDRETEERRKALGMDKGD--EKVKPQSLKETKELNQ 365 + +T TK+ E+ EK E + + + + K + E V+PQ+ + Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 366 ELVKEPSDENNATQQGENKNAPVSKENNAKKEEPKLSPKEEKRRLKEEKKKAKAEQRARE 425 +KEP + N T E + + E ++ + + A Sbjct: 1153 VNIKEPQSQTNTTADTEQ-----PAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Query: 426 FEQRAKEHQERDEKELEERRKALEMN 451 E + + +++ N Sbjct: 1208 QPTVNSESSNKPKNRHRRSVRSVPHN 1233 Score = 45.1 bits (106), Expect = 5e-07 Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 8/213 (3%) Query: 246 RIEKKEGKIDARE----NKREIKQEAIKEPKKANQNAQNAPTLEEKNYQKAEQKLDAKEE 301 +EK+ +D N + ++ + AP +E E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 302 RRRLRDERKKTRATKKAMEFEEREKEHQERDDRETEERRKALGMDKGDEKVKPQSLKETK 361 ++ + + + + A E + +E + + + + + + K ETK Sbjct: 1044 SKQ--ESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 362 E-LNQELVKEPSDENNATQQGENKNAPVS-KENNAKKEEPKLSPKEEKRRLKEEKKKAKA 419 E E ++ E TQ+ + VS K+ ++ +P+ P E K+ Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 420 EQRAREFEQRAKEHQERDEKELEERRKALEMNK 452 + EQ AKE E+ + E N Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNTGNS 1194 Score = 30.4 bits (68), Expect = 0.017 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 5/99 (5%) Query: 359 ETKELNQELVKEPSDENNATQQGE----NKNAPVSKENNAKKEEPKLSPKEEKRRLKEEK 414 E ++ NQ + N Q + N +++ + A P + E E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 415 KKAKAEQRAREFEQRAKEHQERDEKELEERRKALEMNKK 453 K +++ + EQ A E ++ + +E + ++ N + Sbjct: 1044 SKQESKTVEKN-EQDATETTAQNREVAKEAKSNVKANTQ 1081
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 28.1 bits (62), Expect = 0.027 Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 124 ISLDIHDVIEWVNFFIDNPSIQDQERFKQIYFLP 157 +SL+++ +W N+ N + D RFK YF+P Sbjct: 161 LSLNVYAKYQWQNYGASNENEWDGYRFKVKYFVP 194
>PF07132#Harpin protein (HrpN) Length = 356 Score = 28.9 bits (64), Expect = 0.005 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 41 VGGVVGGAMGVAVGGAVGGAVGGPAGSTWGGRIGGTFGGGLGREFGREIGD 91 +G ++GG +G +GG +G ++GG G GG +GG G LG G +G Sbjct: 61 MGSMMGGGLGGGLGG-LGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGG 110
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 277 bits (711), Expect = 6e-97 Identities = 116/244 (47%), Positives = 165/244 (67%), Gaps = 3/244 (1%) Query: 2 RFLKIIFLIFALIGPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLIL 61 R L + ++ LI PL A + LP + S P + + + +T L P+++L Sbjct: 3 RLLSVAPVLLWLITPL--AFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAILL 59 Query: 62 VMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDK 121 +MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ ++ Sbjct: 60 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEE 119 Query: 122 KISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDDVSLSVLIPAFMISEL 181 KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SEL Sbjct: 120 KISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSEL 179 Query: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241 KTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL +L Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239 Query: 242 VASF 245 SF Sbjct: 240 AQSF 243
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 396 bits (1020), Expect = e-138 Identities = 129/384 (33%), Positives = 199/384 (51%), Gaps = 9/384 (2%) Query: 2 KIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKL-DESFDLVITDINMPHMDGL 60 I + +DD +R L + ++ N + DLV+TD+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALS-RAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 61 EFLRLLEGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESIYRTKKVLE 117 + L ++ +V++ T AI + G D+ KPF E I + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT---ELIGIIGRALA 120 Query: 118 FQKKHPLEKPLKKPHKHSFLATSKALEESKRQALKVASTDANVMLLGESGVGKEVFAHFI 177 K+ P + + S A++E R ++ TD +M+ GESG GKE+ A + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 178 HQHSQRSKHPFVAINMSAIPEHLLESELFGYQKGAFTDATAPKMGLFESANKGTIFLDEI 237 H + +R PFVAINM+AIP L+ESELFG++KGAFT A G FE A GT+FLDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 238 AEMPLQLQSKLLRVVQEKEITRLGDNKSVKIDVRFISATNANMKEKIASKEFREDLFFRL 297 +MP+ Q++LLRV+Q+ E T +G ++ DVR ++ATN ++K+ I FREDL++RL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 298 QIVPITIAPLRERVEEILPIAEIKLKEVCDAYHLGEKSFSKNAAKRLLEYSWHGNVRELL 357 +VP+ + PLR+R E+I + +++ L K F + A + + + W GNVREL Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 358 GVVERAAILSEEKEIQEKDLFLER 381 +V R L + I + + E Sbjct: 360 NLVRRLTALYPQDVITREIIENEL 383
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 0.004 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 466 VKNIVDSVFGKGESVKIALKSHLESKNAPLEEVKEFKISSLREKISPKPATETTPTPEIE 525 V + SK K + ++ + + A E + Sbjct: 1020 VDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN 1079 Query: 526 KK--EVAEKETKEKEVQKNDTKEIKEKETKEIKETKEVKEKEPKEAP 570 + EVA+ ++ KE Q T E KE T E +E +V+ ++ +E P Sbjct: 1080 TQTNEVAQSGSETKETQ---TTETKETATVEKEEKAKVETEKTQEVP 1123
>SECA#SecA protein signature. Length = 901 Score = 26.4 bits (58), Expect = 0.047 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 71 RIAKKNLSQMSEEDFKKMREEVRK--ELEEKTKGLSEEEIKAK 111 ++ K ++ ++MR+ V +E + + LS+EE+K K Sbjct: 4 KLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGK 46
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 402 bits (1033), Expect = e-145 Identities = 243/260 (93%), Positives = 251/260 (96%) Query: 1 MKKNGHFKDFAWKKCLLGASVVALLVGCSPHIIETNEVALKLNYHPASAKAQALDEKILL 60 MK N HFKDFAWKKCLLGASVVALLVGCSPHIIETNEVALKLNYHPAS K QALDEKILL Sbjct: 1 MKANNHFKDFAWKKCLLGASVVALLVGCSPHIIETNEVALKLNYHPASEKVQALDEKILL 60 Query: 61 LRPAFQYSDNIAKEYENKFKNQTAIKVEEILQNQGYKVISVDSSDKDDFSFAQKKEGYLA 120 LRPAFQYSDNIAKEYENKFKNQT +KVE+ILQNQGYKVI+VDSSDKDDFSFAQKKEGYLA Sbjct: 61 LRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQGYKVINVDSSDKDDFSFAQKKEGYLA 120 Query: 121 VAMNGEIVLRPDPKRTTQKKSEPGLLFSTGLDKMEGVLISAGFIKVTIIEPMSGESLDSF 180 VAMNGEIVLRPDPKRT QKKSEPGLLFSTGLDKMEGVLI AGF+KVTI+EPMSGESLDSF Sbjct: 121 VAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVKVTILEPMSGESLDSF 180 Query: 181 TMDLSELDIQQKFLRTTHSSHSGGLVSTMVKGTDNSNDAIKSALNKIFMDIMQEIDKKLT 240 TMDLSELDIQ+KFL+TTHSSHSGGLVSTMVKGTDNSNDAIKSALNKIF +IMQEIDKKLT Sbjct: 181 TMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTDNSNDAIKSALNKIFANIMQEIDKKLT 240 Query: 241 QKNLESYQKDAKELKNKRNR 260 QKNLESYQKDAKELK KRNR Sbjct: 241 QKNLESYQKDAKELKGKRNR 260
>ENTEROVIROMP#Enterobacterial virulence outer membrane protein signature. Length = 171 Score = 29.5 bits (66), Expect = 0.005 Identities = 9/32 (28%), Positives = 13/32 (40%) Query: 102 VNAYALQDKGYDTIQANEMIGFKDDERDYSVA 133 + Y + GY Q E +K D DY + Sbjct: 100 ASIYGVVGVGYGKFQTTEYPTYKHDTSDYGFS 131
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 669 SISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLK 717 +S + S V+L NL Q+ + AN++ + T++ I + L+N++ Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 39.2 bits (91), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 29.7 bits (66), Expect = 0.011 Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 57 KLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANKEIENLQN 116 + QV+ +E + NA I IQK +S++ + R + E + Q N +++ Sbjct: 288 QKQVTASETRINRINADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIKD 347 Query: 117 EIKHKSE 123 + Sbjct: 348 AVDATVS 354
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 41.7 bits (98), Expect = 4e-06 Identities = 38/181 (20%), Positives = 69/181 (38%), Gaps = 13/181 (7%) Query: 211 AASIATLSNDEKELGVACVDMGGETCNLTIYSGNSIRYNKYLPVGSHHLTTDL------S 264 AA+I + G VD+GG T + + S N + Y+ + +G + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 265 HMLNTPFPCAEEVKIKYGDLSFESEGETPSQNVQIPTTGSDGNENHIVPLSEIQSIMRER 324 + AE +K + G S E V+ + +EI ++E Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFKIIHRSIQESGLE---EHLGGGVVLTGGMALMKGIKELARIHFTNYPVRLA-TPM 380 + ++++ E + G+VLTGG AL++ + L T PV +A P+ Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLM-EETGIPVVVAEDPL 322 Query: 381 E 381 Sbjct: 323 T 323
>cloacin#Cloacin signature. Length = 551 Score = 35.5 bits (81), Expect = 8e-04 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 20/105 (19%) Query: 195 NGANGSNGNTSNNNAIGSGIDTDGVLGVDGVNGSSSSSGGSVGGYENNFTNHGSTNNNTG 254 +G +G NT ++ G+ +NG + G G ++ + S NN G Sbjct: 2 SGGDGRGHNTGAHSTSGN------------INGGPTGLGVGGGA--SDGSGWSSENNPWG 47 Query: 255 GYDNFNNGSSSSGGLGNGGLFPIPFGNGDTNNSNNSTNTTSPTNA 299 G G GNGG GNG++ + + S A Sbjct: 48 GGSGSGIHWGGGSGHGNGG------GNGNSGGGSGTGGNLSAVAA 86 Score = 33.9 bits (77), Expect = 0.002 Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 27/111 (24%) Query: 170 GKDGANGSNGYGINGSSGSNGANGSNGANGSNGNTSNNNAIGSGIDTDGVLGVDGVNGSS 229 G + S ING G G GA+ +G +S NN G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGG--GASDGSGWSSENNPWGGG---------------- 49 Query: 230 SSSGGSVGGYENNFTNHGSTNNNTGGYDNFNNGSSSSGGLGNGGLFPIPFG 280 S SG GG G N GG + + G S +GG + P+ FG Sbjct: 50 SGSGIHWGG------GSGHGN---GGGNGNSGGGSGTGGNLSAVAAPVAFG 91
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 33.3 bits (76), Expect = 0.017 Identities = 55/290 (18%), Positives = 108/290 (37%), Gaps = 33/290 (11%) Query: 1183 FALQNNRFDSFIPSDQLKIVNAI-ASHF-GFKQEKLQHWYEKIDTTNFSYSEQDYKII-- 1238 F + ++F + L++ + I + F G + ++ + S + K I Sbjct: 174 FDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVE 233 Query: 1239 --KDFIDKVGENNINLNEQTLNEYFIN-HPENILGHLSLEKTRY---SFEINGEQIYKYE 1292 KD ++ N N T N F+ + N++ +K +Y S + K + Sbjct: 234 VCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAKDK 293 Query: 1293 LQALENKSLDLSQALSQAIEKLPKDVYQYHKTTLKTDALIIDANNERYQEVQKLIK---- 1348 L++KS DL + + I + K + T K + + + ++ +L+ Sbjct: 294 SDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCE------DKDIFKLYGELLTANIY 347 Query: 1349 NLARG-ELVKWDNLYYQLEQNNEMGIFLRPTKINSKAQDLRIKAYFKIKDALNDL----- 1402 L +G ++ N YY E + + I L K S+ K Y K+K + Sbjct: 348 ALKKGLSHIELAN-YYS-ENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLL 405 Query: 1403 -TSAELNPLSS---DLELESKRAKLNLVYDEFVKKFGYLNENRNRKDIKQ 1448 ELN L S ++ ++ + E ++ GY+ + K K Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKELIET-GYIKFKKIYKSKKS 454
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 99.1 bits (247), Expect = 1e-26 Identities = 40/209 (19%), Positives = 77/209 (36%), Gaps = 16/209 (7%) Query: 87 EADVLFQAERKIGDWIFSSAVFFFALAFIEAIIIICLLPLKEKVPYLVTFSNATQNFAIV 146 E D L AER + A ALA + + L PLK PY++T T +I Sbjct: 21 ERDKLAAAERS-KKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIA 79 Query: 147 QR--ADKSIRANQALVRQLVASYVNNRE--NISNIKEQNEIAHETIRLQSAFEVWDFFEK 202 + D +I ++A+ + +A+YV RE + +E + + + SA D + + Sbjct: 80 AKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEY----FDAVMVMSARPEQDRWSR 135 Query: 203 LVSYEH-----SIYTNINLTRKISIINIALISKTQANIEISAQLFNKEKLESLKRYRIIM 257 ++ +I N + I ++ + A + + + + + Sbjct: 136 FYKTDNPQSPQNILAN-RTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDAVATI 193 Query: 258 TFEFEPIEIDTKSVPLNPTGFIVTGYDVT 286 ++ + NP G+ V Y Sbjct: 194 KYKVDGTPSKEVDRFKNPLGYQVESYRAD 222
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 29.3 bits (66), Expect = 0.027 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 7/54 (12%) Query: 316 LFITSDFMLSRLNGVVENLVIYP-------KNMLKNLALSGGLVFSQRVLLELP 362 LF+T + L ++ +V+ P N L +G L+F ++L LP Sbjct: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 30.9 bits (69), Expect = 0.012 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 259 YNVKWRKPVMGSYRGYKIISMSPPSSGGTHLIQILNV 295 + +K R+P MG R +ISM PP G H +I N+ Sbjct: 72 FELKMRRP-MGETRNVSLISMPPPWRPGEHADRITNL 107
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 565 bits (1457), Expect = 0.0 Identities = 128/610 (20%), Positives = 229/610 (37%), Gaps = 75/610 (12%) Query: 6 SSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVDVEA 65 S +N + +GL A Q+ ++ NNIS+ + Y+RQ I + + V GV V Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61 Query: 66 IERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYFPDIDEASLFTDLQDYFNSWKELS 125 ++R +D F+ ++ A +++ + + + +SL T +QD+F S + L Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNML-STSTSSLATQMQDFFTSLQTLV 120 Query: 126 KNAKDSAQKQALAQKAEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIAEINK 185 NA+D A +QAL K+E L + K T + L + + + + + ++N+ QIA +N Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 186 RIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNL 245 +I + + N L D+RD+L L +++G V S +YN+ Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEV--------------SVQDGGTYNI 226 Query: 246 NIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVTNITDK-LNQGKVGALLNVY 304 + +G++++ GS L S V + I +K LN G +G +L Sbjct: 227 TMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFR 286 Query: 305 NDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHNIEGEPVEFNSDEAFKDTNY 364 + L + L A E+ N + +A D N Sbjct: 287 SQ--------DLDQTRNTLGQLALAFAEAFNTQH------------------KAGFDANG 320 Query: 365 NIKNGSFDL----IAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDN-----KDNNT 415 + F + + NT K +T + + I+ + + N T Sbjct: 321 DAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTT 380 Query: 416 ENDFDDYFTASFNNETKKFVIQPKNASQGLFVSMKDNGTNFMGALKLNPFFQGDDASNIS 475 D + + + + + M L D + I+ Sbjct: 381 FTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLI-------TDEAKIA 433 Query: 476 LNKEYKKEPTTIRPWLAPINGNFDVANMMQQLQYDSVDFYNDKFDIKPMKISEFYQFLTG 535 + E E G+ D N L S N K ++ Y L Sbjct: 434 MASE---EDA----------GDSDNRNGQALLDLQS----NSKTVGGAKSFNDAYASLVS 476 Query: 536 KINTDAEKSGRILDTKKSMLETIKKEQLSISQVSVDEEMVNLIKFQSGYAANAKVITAID 595 I T+ +++ + +Q SIS V++DEE NL +FQ Y ANA+V+ + Sbjct: 477 DIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 536 Query: 596 RMIDTLLGIK 605 + D L+ I+ Sbjct: 537 AIFDALINIR 546
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.3 bits (73), Expect = 0.003 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 10/160 (6%) Query: 51 SQVESNTQAQEGLKSVYEGQSNKIKHLNDAILSQEESLRALKVSQEVHANTIKQQSEILE 110 + + + Q + SV +N+ D + + E A KQ+S+ +E Sbjct: 995 TNITTPNNIQADVPSV--PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 111 DLRNEIRANQQAIQQLDKQNKEMSELLTKLSQDLVAQIAL-----IQKTLKEQEKQEKAE 165 +NE A + Q + + S + + VAQ KE EK E Sbjct: 1053 --KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 166 KQYKQSAPTNEK-SKQSLATDALEQDKENQPKHQQLPKEE 204 K ++ T E S + EQ + QP+ + + + Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND 1150
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 141 bits (356), Expect = 1e-43 Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 27/171 (15%) Query: 1 MDKETVAGDVSAKTVQTAPV-TTEPAPEKEEPKEEPAPVVEEKPAKPAIESGTIIASIYF 59 D ++ VS + Q PAP PAP V+ K T+ + + F Sbjct: 178 PDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK-------HFTLKSDVLF 223 Query: 60 DFDKYEIKDSDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKN 116 +F+K +K Q LD++ + V++ G TD GS YNQ L +R SV + Sbjct: 224 NFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVD 283 Query: 117 ALVIKGVEKDMIKTISFGEAKPKCTQ-----KTR----ECYKENRRVDVKL 158 L+ KG+ D I GE+ P K R +C +RRV++++ Sbjct: 284 YLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.8 bits (77), Expect = 7e-04 Identities = 12/33 (36%), Positives = 21/33 (63%) Query: 72 EPEVQILKDLKPDFIVVVAYGKILPKEVLKIAP 104 EP +++L ++KP F+V A P+ + +IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 37.7 bits (87), Expect = 8e-05 Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 1/197 (0%) Query: 21 LYKQVESENHNKFLAQQKEFEKEVNEKRAQYQSYFKNLEQKEEALKQQEKEQKARFDDAV 80 K E LA +K ++ E + + + EA K + ++A + A+ Sbjct: 140 SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL 199 Query: 81 KQASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQE-LHQKEAEIERLK 139 + A + D EA K A ++ LE + S + EAE L+ Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 140 RENNEVESKLKAENEKKLNEKLVLEREKIEKALHEKNELKFKQQEEQLEILRNELKNAQR 199 E+E L+ + ++ + EKA E + + Q + L R L+ Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 200 KAELGSQQLQGEVQELA 216 + +QL+ E Q+L Sbjct: 320 ASREAKKQLEAEHQKLE 336 Score = 31.6 bits (71), Expect = 0.006 Identities = 23/177 (12%), Positives = 55/177 (31%), Gaps = 1/177 (0%) Query: 34 LAQQKEFEKEVNEKRAQYQSYFKNLEQKEEALKQQEKEQKARFDDAVKQASALALQDERA 93 L F + K ++ LE ++ L++ + + L + Sbjct: 164 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL 223 Query: 94 KIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEVESKLKAEN 153 + + A ++ + L ++AE+E+ + A+ Sbjct: 224 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 283 Query: 154 EKKLNEKLVLEREKIE-KALHEKNELKFKQQEEQLEILRNELKNAQRKAELGSQQLQ 209 + EK LE EK + + + + L+ R K + + + +Q + Sbjct: 284 KTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340
>cloacin#Cloacin signature. Length = 551 Score = 30.1 bits (67), Expect = 0.014 Identities = 14/95 (14%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Query: 10 AKLSRSNEQLADMLYKLNESLKIYQNVLSNNQDQL----KEIKKANSTLSSQRRFLNASQ 65 ++L +N+ LAD + ++ + + + ++ + ++A + +++++ +A+ Sbjct: 356 SELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAA 415 Query: 66 IRLMDADALLKQSALELEKLQALEKNLKESVEQER 100 DADA L + +K + +++ + ++ E+ Sbjct: 416 KEKSDADAALSSAMESRKKKEDKKRSAENNLNDEK 450
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 52.5 bits (126), Expect = 3e-11 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 11 ALYGGSFDPLHKAHLAIIEQTLELLPFAELIVLPAYQNPFKKPCFLDAQTRFKELESALK 70 A+Y GSFDP+ HL IIE+ L F ++ V +NP K+P F Q R +++ A+ Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRL--FDQVYVAVL-RNPNKQPMF-SVQERLEQIAKAIA 58 Query: 71 GMPRVLLSDFE 81 +P + FE Sbjct: 59 HLPNAQVDSFE 69
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 90.4 bits (224), Expect = 9e-24 Identities = 44/178 (24%), Positives = 69/178 (38%), Gaps = 24/178 (13%) Query: 73 PKEEPKEEPKKEEPKKEVTKPKPKPKPKPKPKPKPEPKPKPEPKPESKIEEVKKEEPKEE 132 P+ EP+ E PK P KP+PKPKP+PKP K++E K + K Sbjct: 58 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 117 Query: 133 PKKEEAKEEAKEKSAPKQVTTKDIVKEKDKQEESNKTSDGATSEAQAYNPGVSNEFLMKI 192 + + E + T + TS TS A N+ Sbjct: 118 ESRPASPFENTAPARLTSSTA------------TAATSKPVTSVASGPRALSRNQ----- 160 Query: 193 QTAISSKNRYPKMAQIRGIEGEVLVSFVINPDGSVTDIKVVKSNTTDILNHAALEAIK 250 +YP AQ IEG+V V F + PDG V +++++ + ++ A++ Sbjct: 161 -------PQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMR 211
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 34.8 bits (80), Expect = 2e-04 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 14/100 (14%) Query: 1 MLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESMDEIERLGIEKSLKSLEN 60 LLE + +G T T + + KV +IDT G + + E+ R SL L+ Sbjct: 46 TLLERQ------RGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYR-----SLSVLDG 94 Query: 61 CDIILSVFDLSKPLEKEDFTIITALNRAKKPCIVVLNKND 100 +++S D + + + AL + P I +NK D Sbjct: 95 AILLISAKDGVQAQTR---ILFHALRKMGIPTIFFINKID 131
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 25.0 bits (54), Expect = 0.043 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%) Query: 24 KNQELAHKITDCAEQILQAKAKDPKANTQELEQKIDAL 61 +NQELA KI + + + +AKA LEQ ID L Sbjct: 960 RNQELAQKIDNLNQAVSEAKA----GFFGNLEQTIDKL 993
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 5e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 115 bits (290), Expect = 5e-30 Identities = 76/361 (21%), Positives = 143/361 (39%), Gaps = 31/361 (8%) Query: 97 AKDLAYKSETFILRLELIPKKANLMILDQEKCVIEA--FRFNDRVAKNDILGALPPN-TY 153 + ++ ++ + + L L K + + I++ F FN N +G N Sbjct: 209 SSEICFRLKNNSIDLSLSNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMS 268 Query: 154 EHQEKDLDFKDLLEILEKDFLFYQHKE----LEHKKNQIIKRLNAQKERLKEKLENLENP 209 + K + + ++LE FY K+ L+ K + + K + R +K + L N Sbjct: 269 KEDYKKIQYDSSSKLLEN---FYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNT 325 Query: 210 KNLQLEAKELQTQASLLLTYQHLINKHESCVILKDFED---KECAIEIDKSMPLNAFINK 266 + + LL + + K S + L ++ I +D++ + + Sbjct: 326 LKKCEDKDIFKLYGELLTANIYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQS 385 Query: 267 KFTLSKKKKQKSQFLYLEEENLKEKIAFKENQIHYIKGATEESVLE------------MF 314 + K K+ + + +E++ + + + I A +E F Sbjct: 386 YYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKF 445 Query: 315 MPVKNSKIKRPMSGYEVLYYRDFKIGLGKNQKENIKL-LQDARANDLWMHVRDIPGSHLI 373 + SK + + I +GKN +N L L+ A +D+W H ++IPGSH+I Sbjct: 446 KKIYKSKKSKTSKPMHFISKDGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVI 505 Query: 374 VFCQKNAPKDEVIMELAKMLIKMQKDVFNS-YEIDYTQRKFVKIIKGAH---VIYSKYRT 429 V + P + ++E A + K +S +DYT+ K VK GA VIYS +T Sbjct: 506 VKNIMDIP-ESTLLEAANLAAYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQT 564 Query: 430 I 430 I Sbjct: 565 I 565
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 472 bits (1217), Expect = e-170 Identities = 180/347 (51%), Positives = 248/347 (71%), Gaps = 2/347 (0%) Query: 2 IFSKLIGLFSHDIAIDLGTANTIVLVKGQGIIINEPSIVAVRMGLFDSKAYDILAVGSEA 61 + K G+FS+D++IDLGTANT++ VKGQGI++NEPS+VA+R S + AVG +A Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKS-VAAVGHDA 59 Query: 62 KEMLGKTPNSIRAIRPMKDGVIADYDITAKMIRYFIEKAHKRKTW-IRPRIMVCVPYGLT 120 K+MLG+TP +I AIRPMKDGVIAD+ +T KM+++FI++ H PR++VCVP G T Sbjct: 60 KQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGAT 119 Query: 121 SVERNAVKESALSAGAREVFLIEEPMAAAIGAGLPVKEPQGSLIVDIGGGTTEIGVISLG 180 VER A++ESA AGAREVFLIEEPMAAAIGAGLPV E GS++VDIGGGTTE+ VISL Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN 179 Query: 181 GLVLSKSIRVAGDKLDQSIVEYIRKKFNLLIGERTGEEIKIEIGCAVKLDPPLTMEVSGR 240 G+V S S+R+ GD+ D++I+ Y+R+ + LIGE T E IK EIG A D +EV GR Sbjct: 180 GVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGR 239 Query: 241 DQVSGLLHTIELSSDDVFEAIKDQIREISSALRSVLEEVKPDLARDIVQNGVVLTGGGAL 300 + G+ L+S+++ EA+++ + I SA+ LE+ P+LA DI + G+VLTGGGAL Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299 Query: 301 IKGLDKYLSDMVKLPVYVGEEPLLAVAKGTGEAIQDLDLLSRVGFSE 347 ++ LD+ L + +PV V E+PL VA+G G+A++ +D+ FSE Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSE 346
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.7 bits (225), Expect = 2e-23 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 1 MQK-KIFLLEDDYLLSESVKEFLEHLGYEVACAFNGKEAYERLSVERFNLLLLDVQVPEM 59 M I + +DD + + + L GY+V N + ++ +L++ DV +P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 NSLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117 N+ +L RIK PV+ ++A T A GA DYL KPFDL EL I R Sbjct: 61 NAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 28.3 bits (63), Expect = 0.018 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 27 ERFISKSKRSLAILEEFDLLNSGFDFSRLKVENDTLELLKAMYLKLEKLESLLLKEKLLE 86 ER+ + I EE+ L +D + L +++ L+A+ + L+++ + + ++LL Sbjct: 44 ERYYGEPLD---IAEEYKLDGGIYDSNFLSQDSERENFLQAIIILLKRINNTISGKQLLS 100 Query: 87 L 87 L Sbjct: 101 L 101
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 134 bits (338), Expect = 7e-41 Identities = 40/207 (19%), Positives = 75/207 (36%), Gaps = 4/207 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIVFVLAIVLISLLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ + + + +L PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSNAKVWQRFEDLIKTNN 157 D +I+ +EA+ + + YV RE + ++ V + S R+ KT+N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSITAKLLNENKLVYEKRYKIVMSYVFDAP 216 Q+ L + V I +A V T + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKVTRYSITEIAPR 243 KNP G++V Y P+ Sbjct: 201 PSKEVDRFKNPLGYQVESYRADVEVPQ 227
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.1 bits (72), Expect = 0.003 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 195 KEESKEEETITIGDNTNAMKIVKKDIQKNYKALKSSQ-RKWYCLWLCSKKSKLSLMPKEI 253 KE+ +EE+ I D A+ + Q + ALK + + Y + +K +MP EI Sbjct: 365 KEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEI 419 Query: 254 FNDKQFTYFKF 264 F+D FTYF F Sbjct: 420 FDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 88.3 bits (219), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEN 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 47.1 bits (112), Expect = 4e-08 Identities = 50/358 (13%), Positives = 106/358 (29%), Gaps = 78/358 (21%) Query: 5 ILITGAYGMVGQNTALYFKKN---------------------------KPNITLLTPKKS 37 L+TGA G +G + + + +P Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFH----- 57 Query: 38 ELYLLDKDSVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDL 97 ++ L D++ + + R + ++ + Y NL L + Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 98 GIKKAINLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVF 157 I+ + +SS Y P D ++ + YA K + S G+ Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLP 172 Query: 158 YKTLVPCNLYGE-------FDKFEEKIAHMIPGLISRMHTAKLKGEKNFVMWGDGTARRE 210 L +YG KF + + L+G+ ++ G +R+ Sbjct: 173 ATGLRFFTVYGPWGRPDMALFKFTKAM---------------LEGKS-IDVYNYGKMKRD 216 Query: 211 YLNAKDLARFIALAYENIAQIPS-----------------VMNVGSGVDYSIEEYYEMVA 253 + D+A I + I + V N+G+ + +Y + + Sbjct: 217 FTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALE 276 Query: 254 QVLDYKGVFVKDLSKPVGMQQKLMDISK-QKALKWELEVPLEQGIKEAYEYYLKLLEV 310 L + +P + + D + + + E ++ G+K +Y +V Sbjct: 277 DALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 150 bits (381), Expect = 7e-50 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIAQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER+ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILDDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + +++DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.008 Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 13/87 (14%) Query: 257 FHFSDEEGFFDFDLMGIVLQNFLYNAIDAIEALEESEQ-GQVKIKAFIQNEFIVFTIIDN 315 F D + +++Q + N I + + Q G++ +K N + + + Sbjct: 242 FENQINPAIMDVQVPPMLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENT 299 Query: 316 GKEVENKSALFEPFETTKLKGNGLGLA 342 G + + G GL Sbjct: 300 GSLALKNTK----------ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 352 bits (905), Expect = e-123 Identities = 118/345 (34%), Positives = 189/345 (54%), Gaps = 27/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 SITSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 ++ SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNSV----FGKGAAVALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N+ +G A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPVVVTSQDITLKITKEPLNNSKNA---------QDLDSMSLDTAHN 293 ++GTIV G D+ + V V+ +T+++T+ P D M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 294 TLSSNGKNITIAGVMKALQKIGVSAKGIVSILQALKKSGAISAEM 338 G ++ ++ L IG+ A GI++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.1 bits (65), Expect = 0.047 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 263 IVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRTSVMAFKKNDTDVLVATDVASRG 322 +V T + ++++ + L K L+ + A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAA--VTIATNMAGRG 510 Query: 323 LDI 325 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.007 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 17 LQNINISLNSSERVAIVGESGSGKSSIANIIMRLNPR----FKPYNGEVLFEKTNLLQES 72 + + + + + I GESG+GK +A + R F N + +L+ ES Sbjct: 150 YRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR--DLI-ES 206 Query: 73 EAF 75 E F Sbjct: 207 ELF 209
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 45.3 bits (107), Expect = 1e-09 Identities = 8/33 (24%), Positives = 19/33 (57%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALIVFLLIYP 43 +++ +L +I LI AG A++V ++++ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA 45
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 521 bits (1342), Expect = 0.0 Identities = 167/539 (30%), Positives = 273/539 (50%), Gaps = 60/539 (11%) Query: 5 YGVLFERLDPSDNALILQHLQQNQIPYKVSKDD-TILIPRDKVYEERITLASQGIPKTSK 63 Y LF L D I+ L Q IPY+ + I +P DKV+E R+ LA QG+PK Sbjct: 50 YRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA 109 Query: 64 VGFEIFDTKDFGATDFDQNVKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEV 123 VGFE+ D + FG + F + V RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ Sbjct: 110 VGFELLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQK 169 Query: 124 PPSASVMLKLKPDMKLSPTQILGIKNLIAASVPKLTVDNVKIVNENGESLGEGDILENSK 183 PSASV + L+P L QI + +L++++V L NV +V+++G L + + + + Sbjct: 170 SPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGR 227 Query: 184 ELALEQLHYKQNFENILESKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN- 242 +L QL + + E+ ++ +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN Sbjct: 228 DLNDAQLKFANDVESRIQRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGD 286 Query: 243 ----VVRSEQNLEEKKEGASKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN----- 292 +RS Q ++ GA GGVPG +SN P P + +QN Sbjct: 287 ASKATLRSRQLNISEQVGAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTS 344 Query: 293 -----------------TTNYEVGKTVSEIKGEFGTLVRLNAAVVVDGKYKIALKDGVNT 335 T+NYEV +T+ K G + RL+ AVVV+ K L DG Sbjct: 345 TSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG--- 398 Query: 336 LEYVPLSDEALKKINALVKQAIGYNQNRGDDVAVSNFEFNPMAPVIDNATFSEKIMHKTQ 395 + +PL+ + +K+I L ++A+G++ RGD + V N F+ + E + Q Sbjct: 399 -KPLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGG-----ELPFWQQQ 452 Query: 396 KILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELN 455 + +++LV +V +I ++K + P R +E ++ + E + E L+ Sbjct: 453 SFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLS 512 Query: 456 KLGDLRKKVEDQLGLNASFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEISSD 514 K L+++ +Q + E++ ++IR E D + L+I+ +S+D Sbjct: 513 KDEQLQQRRANQ----------RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 348 bits (895), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIAKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 31.3 bits (71), Expect = 0.006 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 143 bits (361), Expect = 3e-38 Identities = 100/437 (22%), Positives = 176/437 (40%), Gaps = 85/437 (19%) Query: 3 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 HLNYTFKGEDYALNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 119 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSSANEVSAKAKIGIKD--------- 170 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 171 -------LLEKIITTIPAPSGDASAPLKALIYD-------------------------SW 198 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 199 F--------------------DNYLGALALVRIMDGNINTEQEILVMGTGKKHGVLGLYY 238 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 239 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 295 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 296 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 355 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 356 EREFSLNLIATAPTVVY 372 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.4 bits (71), Expect = 0.013 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 2/82 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNHKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEPIENREAN 480 L T G + E Sbjct: 593 LTFFTNGRSVCLTELKGYHVTT 614
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.7 bits (69), Expect = 0.004 Identities = 10/40 (25%), Positives = 17/40 (42%) Query: 3 NGYYAAAGAMATQFNRLDLTSNNLANLNTNGFKRDDTITG 42 + A + L+ SNN+++ N G+ R TI Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.3 bits (89), Expect = 4e-05 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 33/182 (18%) Query: 35 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 94 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 95 LGSFMLALLPTKEVVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 148 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 149 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGVLALLSLFLRNIM 208 G GS + +G + I I+ W YL + + + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 209 EE 210 ++ Sbjct: 190 KK 191
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 0.002 Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 22/176 (12%) Query: 156 EIYQQCLQAFNLDFTPKKEDFEKTSPNFQKKETQDDKKSPKENPKENPKESPKENPNNET 215 E+ Q + T KE K ET+ ++ PK + +PK+ E Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSE----TV 1139 Query: 216 LNHNAPNEESFLAIPTPYNTTLNALEPQEGLVQISSHPPTYTIYPKRNRLDDWFNPTNLP 275 P E+ + T+N EPQ ++ T P + + Sbjct: 1140 QPQAEPAREN--------DPTVNIKEPQS-----QTNTTADTEQPAKET-----SSNVEQ 1181 Query: 276 LKEPQQEFQKKEPAPQTFTPTTPTTPTPAPNIKNDNQVETPNQKTPANPPTKDDPQ 331 + TTP T P N ++ N+ + ++++ + P +P Sbjct: 1182 PVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 30.9 bits (70), Expect = 0.016 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 4/65 (6%) Query: 138 GRY-IKKLEKLGFYDKIMQEKPAILKEFFSHFSSIEWHLDGFMSVFERQCLLEAAELVPI 196 R + L + ++ SHF+ E H DG R + +AAE + Sbjct: 129 NRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAE-HPDGISGAMAR--IEQAAEGLEC 185 Query: 197 TLHLS 201 LS Sbjct: 186 RRSLS 190
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 28.6 bits (64), Expect = 0.025 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 10/53 (18%) Query: 14 WVGTIVIVLLVIFFIAQAFIIPSRSMVGTLYEGDMLFVKKFSYGIPIPKIPWI 66 W+G L ++ ++ S+VG ++ ++ PIP P++ Sbjct: 225 WLG--WQALPIVLLLS--------SLVGAFMGIGLILLRNHHQSKPIPFGPYL 267
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.7 bits (67), Expect = 0.002 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 31 LQSYSVMLFFNVLLLIDILGFLPFSIYHHFMASLIFSTLFCGSLFLSSPLLGVIALMALA 90 L Y F ++L+ +LPFS S + + +L PLL V ALMA+A Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 91 SSLL 94 S ++ Sbjct: 101 SHVV 104
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.5 bits (66), Expect = 0.019 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 11/74 (14%) Query: 156 HSFPKLTIIIEHLSD---WRSIALIEKHDNLYATLTLHHIS---MTLDDLLGGSLNPHCF 209 +L II + D +AL D LT+ IS TL+ LLGGS Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLALGNGQDLRTGILTVDEISNQSTTLNKLLGGSQ----- 550 Query: 210 CKPLIKTKKDQERL 223 C+PL K ++ Q+ L Sbjct: 551 CQPLNKAQEVQKWL 564
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 49.6 bits (118), Expect = 4e-09 Identities = 23/61 (37%), Positives = 29/61 (47%) Query: 81 PGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPKPEPKPKPKPEPKKPNHKHKALKKV 140 P A +P +P P P P P+ KPKP+PKPKPKP K + +K V Sbjct: 58 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 117 Query: 141 E 141 E Sbjct: 118 E 118 Score = 43.1 bits (101), Expect = 6e-07 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPKPI-EKPKPKPEPKPKPKPEPKKPNHKHKALKKVE 141 A Q PP P P P P P K P KPKPKP+PK K V+ Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVK 104 Query: 142 KVEEKKVAEEKKEE 155 KV+E+ + K E Sbjct: 105 KVQEQPKRDVKPVE 118 Score = 41.9 bits (98), Expect = 1e-06 Identities = 41/216 (18%), Positives = 73/216 (33%), Gaps = 40/216 (18%) Query: 98 PTPPTPPTPPKPIEKPKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVAEEKKEEKK 157 P PP+P+ +P+P+PEP P+P E K K K + KKV E+ K + K Sbjct: 56 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVK 115 Query: 158 VVEQKVEHKKVEEKKPAKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTKRDIDELYGEEF 217 P E P N T + Sbjct: 116 -----------------------------PVESRPASPFENTAPARLTSSTATAATSKPV 146 Query: 218 GDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKIIV 277 + + + RN + YP A L +G V+F + P+G + +++I+ Sbjct: 147 TSVASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQILS 195 Query: 278 GSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 313 M + ++ + +P + ++ I + Sbjct: 196 AKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 40.0 bits (93), Expect = 5e-06 Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 74 QDPNKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPKPEPKP--KPKPEPKK 129 Q +P P P P PKP KPKPKP K +PK + K Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKP 116 Score = 32.3 bits (73), Expect = 0.002 Identities = 16/57 (28%), Positives = 23/57 (40%) Query: 74 QDPNKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPKPEPKPKPKPEPKKP 130 +P P+P P++ P P P PKP K + +PK KP +P Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 121 Score = 28.8 bits (64), Expect = 0.022 Identities = 12/53 (22%), Positives = 16/53 (30%) Query: 75 DPNKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPKPEPKPKPKPEP 127 +P P + P P P P K E+PK +P P Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASP 124
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 101 bits (252), Expect = 9e-31 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.6 bits (121), Expect = 2e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLEGYEFT 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 31.0 bits (70), Expect = 0.004 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 13/115 (11%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLEGYEFTYKRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D L L + A + ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL---------LTLELAKNEERQQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANSTVLLRLVSHARKLVIE--FDSKYINAVKVGD 180 +RAP + + GV + L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQ 384
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 893 bits (2310), Expect = 0.0 Identities = 289/1040 (27%), Positives = 522/1040 (50%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDMPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSVNKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ ++ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVVLEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-NYEIRPFMDTTTFIRTSIEDVKFDLVLGAILAVLVVFVFL 344 ++ + L +Q P ++ DTT F++ SI +V L +L LV+++FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RSGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLSIGIIIDDAIVVIENIHK- 403 ++ TL+ I++P+ ++GTFA++ G+S+N LTM + L+IG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESYYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F ++YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKLGMDFMLKEDRGRFQVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G F ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTSQNPFRAKIFVQLKPLEERKKEHQLGQFELMRALKKELRS 631 + + E FT + G +QN FV LKP EER + + + RA K EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENSAEAVIHRA-KMELGK 656 Query: 632 LPEAKDLESINLSEVALIGGGGDSSPFQTYVFSHSQEAVDKSVANLKKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETQSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RSAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLIALATAFVLIYMILA 871 + G S G+ + + +N L G Y +TG + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLAHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGSAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G GS ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 34.6 bits (79), Expect = 0.006 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 18/220 (8%) Query: 252 TTTISGVTFNDNGALTYKGGNSIGGSITFTNSNINHYKLNLNANSITFNNSALGSMPNGN 311 T ++ N N T + G S+T ++++ K +N ++ S L GN Sbjct: 390 NTVVNINRINTNADGTIRVG-GFKASLTTNAAHLHIGKGGINLSNQASGRSLLVENLTGN 448 Query: 312 ANTVGEAYILNASNITFNNLTFNGGWFVFNRPNSHVNFQGTTTINNPTSPFVNMTGKVTI 371 G + N G +++ F+ T N T+ F N Sbjct: 449 ITVDGPLRV----NNQVGGYALAGS-------SANFEFKAGTDTKNGTATFNNDISLGRF 497 Query: 372 NPNAIFNIQNYTPTIGNSYTLFSMKNGNITYNGVSDLWNIIRLKNTQATKDNSKNAASSN 431 + I F+ + ++GV++ NI +L A+ + + + N Sbjct: 498 VNLKVDAHTANFKGIDTGNGGFNT----LDFSGVTNKVNINKL--ITASTNVAVKNFNIN 551 Query: 432 NTHTHYVTYNLGGTLYHFRQIFSPNSIILQSIYYGANNIH 471 ++G + I S + I + G +I+ Sbjct: 552 ELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIY 591 Score = 34.6 bits (79), Expect = 0.007 Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 5/100 (5%) Query: 701 AYSFEGANNAFNSSKFNHGSFHFSHAEQTDAFNNNSFNGGSFSFNAKQVDFSGNSFNGGV 760 +YS + FNH + +A Q +N + G+ + + + G Sbjct: 272 SYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGG 330 Query: 761 FDF---NNTPKANFNNDTFNVNNQFKLNG-SQTTFSFNKG 796 + + NN + + N +Q N Sbjct: 331 YKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSA 370
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 302 bits (774), Expect = 5e-95 Identities = 102/376 (27%), Positives = 177/376 (47%), Gaps = 13/376 (3%) Query: 2 FAPYYLQDNPTEHIVTLMKDITSALGMLSKPNLKNNSTDVLQLNTYTQQMGRLAKLSNFA 61 +A + I + T+ L ++ K + L L+ RL LS Sbjct: 924 YARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRRH 983 Query: 62 SFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKLKNNLWATGVGGVSFVENGTGT 121 + F++RL +LK+QRFA + +A +V+ +++ + + N+WA +GG S G + Sbjct: 984 TNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEKPTNVWANAIGGTSLNSGGNAS 1042 Query: 122 LYGVNVGYDRFIKG---VIVGGYAAYGYSGFYER--ITNSKSDNVDVGLYARAFIKKSEL 176 LYG + G D ++ G IVGG+ +YGYS F + NS ++N + G+Y+R F + E Sbjct: 1043 LYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGANNTNFGVYSRIFANQHEF 1102 Query: 177 TFSVNETWGANKTQISSTDTLLSMINQSYKYSTWTTNAKVNYGYDFMFKNKSIILKPQIG 236 F G++++ ++ LL +NQSY Y ++ + +YGYDF F +++LKP +G Sbjct: 1103 DFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASYGYDFAFFRNALVLKPSVG 1162 Query: 237 LRYYYIGMTGLEGVMNNAIYNQFKANADPSKKSVLTIDFAFENRHYFNTNSYFYAIGGIG 296 + Y ++G T + N+ + S + + E R+Y+ SYFY G+ Sbjct: 1163 VSYNHLGSTNFKS---NS-NQKVALKNGASSQHLFNASANVEARYYYGDTSYFYMNAGVL 1218 Query: 297 RDLLVRSMGDKLVRFIGNNTLSYRKGELYNTFASITTGGEVRLFKSFYANAGVGARFGLD 356 ++ + V + R NT A + GGE++L K + N G L Sbjct: 1219 QEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGGELKLAKEVFLNLGFVYLHNLI 1275 Query: 357 YKMINITGNIGMRLAF 372 + + N+GMR +F Sbjct: 1276 SNIGHFASNLGMRYSF 1291