>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 77.4 bits (190), Expect = 5e-19 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 2/187 (1%) Query: 5 VTLVTGASSGIGTELARVFAANGHRLALTARREDRLAALAAEISAKGAPAPLVIPCDLTS 64 + +TGA+ GIG +AR A+ G +A ++L + + + A+ P D+ Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEAR-HAEAFPADVRD 68 Query: 65 PNAGATIEAALSAAGVELEYLVNNAGFGLFGKAVQLDRTEQLDMIAVNVRALTELSLRFS 124 A I A + ++ LVN AG G L E +VN + S S Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 125 DQLIRNKGG-ILNLGSVAGFLPGPGMAVYYASKAYVISFTEALRKELAPHGVRVTVLCPG 183 ++ + G I+ +GS +P MA Y +SKA + FT+ L ELA + +R ++ PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 184 PVPSEFQ 190 ++ Q Sbjct: 189 STETDMQ 195
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 56.8 bits (137), Expect = 8e-11 Identities = 54/238 (22%), Positives = 92/238 (38%), Gaps = 8/238 (3%) Query: 65 ALMLPVMFISMP-AGAVADMYDRRIVALVSLAVALGGATTLTVLAWLGLVTPERLLALCF 123 AL + F P GA++D + RR V LVSL G A ++A + +L + Sbjct: 50 ALYALMQFACAPVLGALSDRFGRRPVLLVSL---AGAAVDYAIMATAPFLW---VLYIGR 103 Query: 124 VIGSGMALMGPAWQSSVSEQVPPETLPAAVALNGISYNIARSFGPAIGGVVVAAAGAVAA 183 ++ G + +++ + + GP +GG++ + Sbjct: 104 IVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPF 163 Query: 184 FAANALLYLPLLAALFLWRRVVEPSRLPREPLNRAIVSGVRYIIHSPSIRIVLIRTLVTG 243 FAA AL L L FL + R P ++ R+ + ++ + Sbjct: 164 FAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQ 223 Query: 244 LIGGSISALMPLVARDLLHGGAQTYGIMLGAFG-MGAVVGALNIGEIRKRLSGEAAIR 300 L+G +AL + D H A T GI L AFG + ++ A+ G + RL A+ Sbjct: 224 LVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM 281
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 52.4 bits (125), Expect = 5e-09 Identities = 51/279 (18%), Positives = 83/279 (29%), Gaps = 41/279 (14%) Query: 373 HGDAGKAREWTLRAVRAR---HDPAWTADGYVSDRWRPISPVTGRLDAFQWQTPVAS--- 426 D G A ++ LR V R ++P V R + +D TP Sbjct: 961 TVDLG-AWKYKLRNVNGRYDLYNP------EVEKRNQT-------VDTTNITTPNNIQAD 1006 Query: 427 LPSERNSVIESSEFAEAILAPPSRPAIPEGLVEPPRTVPAAPVVITPTLQDNEPPRPAEP 486 +PS ++ E + EA + PP+ PA P E TV + T++ NE E Sbjct: 1007 VPSVPSNNEEIARVDEAPVPPPA-PATPSETTE---TVAENSKQESKTVEKNEQ-DATET 1061 Query: 487 EP----AVETAVADVVDKPVDKPVDIRVEKAEDKVEKAVEGPV----AEPAVVTSRPASA 538 + A ++V V + ++ + E A V + Sbjct: 1062 TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQE 1121 Query: 539 EPAPPLQAAAPSEADAEAETAEEPETPPEPAKPAETAA------AAPTPLFRNRSDLAKP 592 P Q + E + EP +P + A + S + Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 593 PETPIQAIVPIMRPPDDPGVEDDD--QPRDEFAEQIAPK 629 P T + ++P QP PK Sbjct: 1182 PVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Score = 32.3 bits (73), Expect = 0.008 Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 3/111 (2%) Query: 524 PVAEPAVVTSRPASAEPAPPLQAAAPSEADAEAETAEEPETPPEPAKPAETAAAAPTPLF 583 P E T + +QA PS E A E P P PA + T Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 584 RNRSDLAKPPETPIQAIVPIMRPPDDPGVEDDDQPRDEFAEQIAPKAQAGG 634 ++ + +K E Q + V + + + Q AQ+G Sbjct: 1043 NSKQE-SKTVEKNEQD--ATETTAQNREVAKEAKSNVKANTQTNEVAQSGS 1090
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.3 bits (91), Expect = 2e-05 Identities = 48/316 (15%), Positives = 95/316 (30%), Gaps = 41/316 (12%) Query: 81 PVQPPSPTTPLSTA---VDELTSRVATLEQRAGKPDAAVAGRIDAVDKAIAAVRSDVAAL 137 PV PP+P TP T + T+E+ A + +A +S+V A Sbjct: 1024 PVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEA----KSNVKAN 1079 Query: 138 RSQSDKTVAALNDVKAQPRDSAAPAPAPVDLSGLTARIDALERASKTQSAALAQDRAKLS 197 ++ + + Q A V+ A+++ + + + + + S Sbjct: 1080 TQTNEVAQSGSETKETQTT--ETKETATVEKEE-KAKVETEKTQEVPKVTSQVSPKQEQS 1136 Query: 198 EATQARSADDAPLRRVI------------AATLLDVAVRHGDPFGAALSTATSLAPDASA 245 E Q ++ + A T + + T ++ Sbjct: 1137 ETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVV 1196 Query: 246 LKPLEPFAANGVPS--------PAALSRDLLTIVPKLAPPAAESTTGNSILSKLSAGAQN 297 P A P+ P R + VP PA S+ S ++ + N Sbjct: 1197 ENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTN 1256 Query: 298 LVKVERTDGAGTDRGAVVARVTAAALRNDLGEARRELKSLSAEDRAPANDWLAKA-DARD 356 T+ +D A V N + + L + N W++ ++ Sbjct: 1257 ------TNAVLSDARAKAQFVAL----NVGKAVSQHISQLEMNNEGQYNVWVSNTSMNKN 1306 Query: 357 AALAAARKFADDSMTA 372 + + R+F+ S Sbjct: 1307 YSSSQYRRFSSKSTQT 1322
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 36.8 bits (85), Expect = 5e-05 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 22/109 (20%) Query: 10 TFWRGPLDR---LRQTCLRS--QLAAGHKVTVYSFDPLPGLPDGVGNADAEAILPCAFAE 64 W +++ + Q C+ S + + KV + + N +P + Sbjct: 73 ICWLQGIEKAPYIVQQCVASVKKNSGDFKVIIIDGN----------NYKEWVDIPDFLIK 122 Query: 65 RLRPPQPDGSWRDWTTLQFSDFFRMRLMAERAGLWLDADVLLLRPVEID 113 R + FSD R+ L+ + GLW+DA V + V Sbjct: 123 RWQE-------GKMLDAWFSDILRLFLLCKYGGLWIDATVYMFDKVPNY 164
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 30.4 bits (68), Expect = 0.005 Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 5/66 (7%) Query: 141 SGMTLEEVAPLLGVTRRSLQHWRKGK-----AISTRKERRLRALVDALSLLPAESPALRR 195 S +L E+A GVTR ++ K K I E + L P Sbjct: 30 SSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVL 89 Query: 196 RRLLER 201 R +L Sbjct: 90 REILIH 95
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 80.1 bits (197), Expect = 5e-20 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 4/185 (2%) Query: 9 VLITGASSGIGAVYAERFAARGHDLILVARNQDRLNAI--ADKLTARHGVKVKTLVADLT 66 ITGA+ GIG A A++G + V N ++L + + K ARH V D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 67 ARDDLARVEAVLKSDASITHLVNNAGFGSAAPLAKADVDEMERMVAINVTAPLRLTYAAV 126 A D++ + + I LVN AG + +E E ++N T + + Sbjct: 71 AIDEI--TARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 127 PQFVARQQGTIINIASIVAIGPEVLNGVYGGTKSFVLAFSQSLRKELAGTGVHVQVVLPG 186 + R+ G+I+ + S A P Y +K+ + F++ L ELA + +V PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 187 ATGTE 191 +T T+ Sbjct: 189 STETD 193
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 98.7 bits (246), Expect = 8e-25 Identities = 46/299 (15%), Positives = 95/299 (31%), Gaps = 30/299 (10%) Query: 96 QQVEKGDELFEIDAVPYRLAVDQAKAALAQARTAYDNLTANIKIYGQMLDLANQGIDLKQ 155 Q V + + L + + + + Q D A ++ +++ Sbjct: 177 QNVSEEEVLRLTSLIKEQFS--TWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEK 234 Query: 156 KDVERKQTLAKNNFGSQLDLDNAANALVTAG-------AQAQFIKQQLSNAKTQLLGNPD 208 ++ +L ++ + N V A +Q + I+ ++ +AK + Sbjct: 235 SRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQ 294 Query: 209 LPLEEFPPY--------VQAKAKLEDAQRDLDHTTLRAPMPGIATQVDQIQLGRFVAAGT 260 L E +L + + +RAP+ Q+ G V Sbjct: 295 LFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE 354 Query: 261 PVFSVIDISNP-WVDANPKESDFTYVAVGQPVELDVDAFPNHRF---KGTVSSLSPGTGA 316 + ++ + V A + D ++ VGQ + V+AFP R+ G V +++ Sbjct: 355 TLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA-- 412 Query: 317 QFAILPPQNATGNFVKVVQRVPVRIAFDKTDKFVARLKAGMSVNVSIDTGHERTLAGLF 375 G V+ + L +GM+V I TG ++ L Sbjct: 413 -----IEDQRLGLVFNVIISIEENCLSTGNKNI--PLSSGMAVTAEIKTGMRSVISYLL 464 Score = 57.1 bits (138), Expect = 4e-11 Identities = 48/264 (18%), Positives = 98/264 (37%), Gaps = 27/264 (10%) Query: 9 APEQKASPDAAPPAAAAAKPARPGFLRRYRRTLLLVVLPLVAAIGGFVL-YLNGGRYVTT 67 P ++ + PA RR R ++ LV A VL + Sbjct: 31 TPVREKDENEFLPAHLEL--IETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANG 88 Query: 68 DDAYVGAQKVLITPDISGKIIKVLVKEGQQVEKGDELFEIDAVPYRLAVDQAKAALAQAR 127 + G K I P + + +++VKEG+ V KGD L ++ A+ + +++L QAR Sbjct: 89 KLTHSGRSKE-IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQAR 147 Query: 128 TAYDNLTANIKIYGQMLDLANQGI--------DLKQKDVERKQTLAKNNF--------GS 171 + I L+ + ++ +++V R +L K F Sbjct: 148 --LEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK 205 Query: 172 QLDLDNAANALVTAGAQAQFIKQQLSNAKTQLLGNPDLPLEEFPP---YVQAKAKLEDAQ 228 +L+LD +T A+ + K++L L ++ ++ + K +A Sbjct: 206 ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 229 RDLDHTTLRAPMPGIATQVDQIQL 252 +L ++ + I +++ + Sbjct: 266 NELR--VYKSQLEQIESEILSAKE 287
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.0 bits (98), Expect = 9e-06 Identities = 49/267 (18%), Positives = 82/267 (30%), Gaps = 58/267 (21%) Query: 313 ASLAKLQLEKLTAEENRAAAAEKARV-----------TEAERARLASEGARKDTLAKAEA 361 + +Q + + N E ARV T +E +E +++++ + Sbjct: 998 TTPNNIQADVPSVPSNNE---EIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN 1054 Query: 362 EAKAAE---QARLAAERA----------NQLAQQQAAEAERKRQE-QQLAAADNPRAATS 407 E A E Q R A+ A N++AQ + E + E ++ A + A Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 408 PAAVPQQGPQVASLTPASQPADLTKSVQLELRRVGCLTDEADGDWGSASRRSLSQFNRYA 467 Q+ P+V S Q T Q E +R + N Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAE-----------------PARENDPTVN--I 1155 Query: 468 GTKLDTQAASADALQAIQLKQARVCPLVCPHGTKSDGDRCTRIVCAEGSFLNDDNECEKR 527 +AD Q + + V V T + G+ E Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVEN-----------PENTTP 1204 Query: 528 RDKKPVAKRDSSDDEDAAPRRRTRAVP 554 +P +SS+ RR R+VP Sbjct: 1205 ATTQPTVNSESSNKPKNRHRRSVRSVP 1231
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.010 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 16/82 (19%) Query: 397 QIRITGRREGAVTILEVSDTGPGVPAKVREHLFEAFRGAGRPGGSGLGLAIAAELVRA-- 454 +I + G ++ LEV +TG +E +G GL E ++ Sbjct: 280 KILLKGTKDNGTVTLEVENTGSLALKNTKE-------------STGTGLQNVRERLQMLY 326 Query: 455 -HDGDIQLVEGTLGATFRITIP 475 + I+L E + IP Sbjct: 327 GTEAQIKLSEKQGKVNAMVLIP 348
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 151 bits (384), Expect = 1e-44 Identities = 94/325 (28%), Positives = 132/325 (40%), Gaps = 54/325 (16%) Query: 92 AAGISWGVHEVAPTAALDD--GAATTVAILDTGIDASHAAFKGVDLRRENFSNSSND--- 146 I GV + A + G VA+LDTG DA H K + NF++ Sbjct: 19 VNEIPRGVEMIQAPAVWNQTRGRGVKVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPE 78 Query: 147 --GDANGHGTHCAGTIFGRDVDGVRIGIARGVRKALIGKVLNDEGRGDTAIFARATQWAL 204 D NGHGTH AGTI + + +G+A +I KVLN +G G + +A+ Sbjct: 79 IFKDYNGHGTHVAGTIAATENENGVVGVAPEADLLII-KVLNKQGSGQYDWIIQGIYYAI 137 Query: 205 DNGARVISMSLGFDFNALFEDLKAKGNPRAQAFSMALSHYRDTVRLFDSIIQTLNASGIV 264 + +ISMSLG + V ++ AS I+ Sbjct: 138 EQKVDIISMSLGGP---------------------------EDVPELHEAVKKAVASQIL 170 Query: 265 LRTGAVVVAAAGNESQRRETPPCIVDVSLPAAAEGVVSVGAVEKSTNGFEVASFSNANAK 324 V+ AAGNE + + P V+SVGA+ + + FSN+N + Sbjct: 171 ------VMCAAGNEGDGDDRTDEL---GYPGCYNEVISVGAINFDRH---ASEFSNSNNE 218 Query: 325 --LWAPGVGIVSARVGGGLAVSQGTSMAAPHVSG-AAVLWSEWLARRNPRSGPAELKARL 381 L APG I+S GG A GTSMA PHV+G A++ A EL A+L Sbjct: 219 VDLVAPGEDILSTVPGGKYATFSGTSMATPHVAGALALIKQLANASFERDLTEPELYAQL 278 Query: 382 TASARVTGFSPTVADAERGSGLIQA 406 G SP + G+GL+ Sbjct: 279 IKRTIPLGNSPKM----EGNGLLYL 299
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.4 bits (81), Expect = 8e-04 Identities = 26/202 (12%), Positives = 59/202 (29%), Gaps = 12/202 (5%) Query: 204 SAATAPELTKAADARVKQLAEEAKARADKAAREKE--DRQREQNAAASKVSELSNESQRL 261 S A + ++ + A +A + ++ + L L Sbjct: 206 STADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAEL 265 Query: 262 EAGAKDAAQAFERAKQDRDKNLADIRQADADIARMQQQMDDEETTGRGTLNRL--GNPAV 319 E + A A+ +A+ A ++ Q + L A Sbjct: 266 EKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAK 325 Query: 320 GQGPRWRA-LNNSKQLLVKTKENL-------KAQTAALESAVTKAEQTSQQASEKFEKAK 371 Q L ++ ++++L + LE+ K E+ ++ + + + Sbjct: 326 KQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLR 385 Query: 372 LDLSNAEAGLTSVKSVNEVATA 393 DL + V+ E A + Sbjct: 386 RDLDASREAKKQVEKALEEANS 407
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.4 bits (188), Expect = 2e-17 Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 19/158 (12%) Query: 1 MTKPKIRVLIVDDSASVRQIMTSILGEDPDIEIMGTAADPFAAARRLQNELPDVIVLDIE 60 MT I L+ DD A++R ++ L ++ ++ R + D++V D+ Sbjct: 1 MTGATI--LVADDDAAIRTVLNQAL-SRAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVV 56 Query: 61 MPRMDGLTFLRKIMAQHP-IPVVICSAATEQGSQQAFEALEAGAVDIVPKPRVDTRQALL 119 MP + L +I P +PV++ SA A +A E GA D +PKP Sbjct: 57 MPDENAFDLLPRIKKARPDLPVLVMSAQNT--FMTAIKASEKGAYDYLPKPFD------- 107 Query: 120 EASGRLRDAVKSAARARVRPRAARRPMIEKKLTADAII 157 L + + RA P+ + + ++ Sbjct: 108 -----LTELIGIIGRALAEPKRRPSKLEDDSQDGMPLV 140
>PF06580#Sensor histidine kinase Length = 349 Score = 42.2 bits (99), Expect = 5e-06 Identities = 21/134 (15%), Positives = 37/134 (27%), Gaps = 51/134 (38%) Query: 408 LIRNAIDHGIEQTAVRQAAGKTEKGRIELHAIHSGAQVLVTVRDNGAGLNTARIRAKAEE 467 L+ N I HGI Q + G+I L V + V + G+ Sbjct: 263 LVENGIKHGIAQ--------LPQGGKILLKGTKDNGTVTLEVENTGSL------------ 302 Query: 468 QGLLAPDADMSDTEIHQFLFHPGFSTAQTISALSGRGVGMDVVKRTIENMRG---SIDMA 524 + G G+ V+ ++ + G I ++ Sbjct: 303 ---------------------------ALKNTKESTGTGLQNVRERLQMLYGTEAQIKLS 335 Query: 525 TKPGEGTTVTLRLP 538 K G + +P Sbjct: 336 EKQG-KVNAMVLIP 348
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 29.4 bits (66), Expect = 0.018 Identities = 8/40 (20%), Positives = 18/40 (45%) Query: 1 MTWRDVALTLFLMAMIALVLAPGFPPRRRRTVRQPVPLDP 40 + W+ + + L L +++ + G R +P+P P Sbjct: 226 LGWQALPIVLLLSSLVGAFMGIGLILLRNHHQSKPIPFGP 265
>cloacin#Cloacin signature. Length = 551 Score = 32.0 bits (72), Expect = 0.002 Identities = 14/23 (60%), Positives = 15/23 (65%) Query: 259 GGGSTGGGCGGGGDGGGGGGCGG 281 GGGS G GG G+ GGG G GG Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGG 79 Score = 29.3 bits (65), Expect = 0.018 Identities = 12/25 (48%), Positives = 12/25 (48%) Query: 259 GGGSTGGGCGGGGDGGGGGGCGGCS 283 GG G G G G GGG G G S Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLS 82 Score = 28.9 bits (64), Expect = 0.025 Identities = 13/25 (52%), Positives = 14/25 (56%) Query: 259 GGGSTGGGCGGGGDGGGGGGCGGCS 283 G G GG G G+GGG G GG S Sbjct: 51 GSGIHWGGGSGHGNGGGNGNSGGGS 75 Score = 28.1 bits (62), Expect = 0.042 Identities = 12/25 (48%), Positives = 13/25 (52%) Query: 254 TSQTLGGGSTGGGCGGGGDGGGGGG 278 TS + GG TG G GGG G G Sbjct: 16 TSGNINGGPTGLGVGGGASDGSGWS 40 Score = 28.1 bits (62), Expect = 0.047 Identities = 14/25 (56%), Positives = 14/25 (56%) Query: 259 GGGSTGGGCGGGGDGGGGGGCGGCS 283 GGGS G GGG G G GG G S Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNS 71
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 40.4 bits (94), Expect = 3e-06 Identities = 46/204 (22%), Positives = 73/204 (35%), Gaps = 44/204 (21%) Query: 34 GGVAAVFGASGGIGSALSAALTDSG-----------------QFDTVLGFSRNTSPAFDL 76 G +A + GA+ GIG A++ L G PA D+ Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA-DV 66 Query: 77 ADEDSLARAAEQVAG-AGEIRLVIIATGRLHEGEM--LPEKSWRELDAGRLARAFAVNAT 133 D ++ ++ G I +++ G L G + L ++ W F+VN+T Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEAT--------FSVNST 118 Query: 134 GPALVMKHLLPQLPRTGKAMLAALSARVGSIGDNRLG----GWYGYRASKAALNQLVHCA 189 G + K M+ S + ++G N G Y +SKAA C Sbjct: 119 GVFNASR-------SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCL 171 Query: 190 AIELARRAPEAI-CVALHPGTVAT 212 +EL A I C + PG+ T Sbjct: 172 GLEL---AEYNIRCNIVSPGSTET 192
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 43.1 bits (101), Expect = 4e-07 Identities = 48/203 (23%), Positives = 78/203 (38%), Gaps = 25/203 (12%) Query: 2 STSIKDSVVVITGATGAIASALVAELLARGAAKIYAA----------ARDVSGLARTDKI 51 + I+ + ITGA I A VA LA A I A + AR + Sbjct: 3 AKGIEGKIAFITGAAQGIGEA-VARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 52 VPLKLDVTSDADAAAA-------AAQASDATLLINNAGVNHNTAFLLAPDLAIATEEIAI 104 P + D+AA + +L+N AGV D ++ Sbjct: 62 FPADV-----RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEW-EATFSV 115 Query: 105 NYLAPLRLTRAFAPVLI-KNHGAVLNILTILARVNLPLMGSYCASKAAALSLTQGLRGEL 163 N +R+ + ++ + G+++ + + A V M +Y +SKAAA+ T+ L EL Sbjct: 116 NSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL 175 Query: 164 TPKGVRVAGALPGAVDTRMTAGL 186 +R PG+ +T M L Sbjct: 176 AEYNIRCNIVSPGSTETDMQWSL 198
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 36.5 bits (84), Expect = 0.001 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 6/104 (5%) Query: 2026 GNGASTINGTAQDDNFVNVGGGVTIFGKGGNDTFVF-----NPHFGSATIGDLDLAKDSV 2080 + + + G A +D G T++G G DTFV+ + I D D + Sbjct: 355 NSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAYDWIADFQKGIDKI 414 Query: 2081 EIDHALFANMDALVASAQSANNGHDTVITDAAHDTLTLKGVTLD 2124 ++ A Q G + ++ A +++T + Sbjct: 415 DLS-AFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITNLWLHEA 457
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.6 bits (64), Expect = 0.043 Identities = 13/31 (41%), Positives = 16/31 (51%) Query: 61 TVGIVGESGCGKSTTARLLMHLMERDAGEII 91 T+ I GESG GK AR L +R G + Sbjct: 162 TLMITGESGTGKELVARALHDYGKRRNGPFV 192
>cloacin#Cloacin signature. Length = 551 Score = 41.2 bits (96), Expect = 5e-06 Identities = 25/60 (41%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 366 SPGGMGSPGGFGSG---GVSNPPGFGGAPGGPPSGGGGFGGQGGFGGGGGGGGGGGGGGG 422 P G+G GG G N P GG+ G GGG G GG G G GGG G GG Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG-GNGNSGGGSGTGGNL 81 Score = 39.3 bits (91), Expect = 3e-05 Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 371 GSPGGFG-SGGVSNPPGFGGAPGGPPSGGGGFGGQGGFGGGGGGGGGGGGGGG 422 G P G G GG S+ G+ + P GG G G G G G G GGG G GG Sbjct: 22 GGPTGLGVGGGASDGSGWS-SENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGG 73 Score = 35.1 bits (80), Expect = 6e-04 Identities = 30/99 (30%), Positives = 36/99 (36%), Gaps = 12/99 (12%) Query: 313 GQGPTQEPGSPRGRSGVNGGTTAPGTPGGP------AAPNNPVAPGHRDMPGFGRDSGMS 366 G G G+ +NGG T G GG ++ NNP G +G SG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 367 PGGMGSPGGFGSGG------VSNPPGFGGAPGGPPSGGG 399 GG G GSG V+ P FG P GG Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 28.9 bits (64), Expect = 0.043 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 5/50 (10%) Query: 378 SGGVSNPPGFGGAPGGPPSGGGGFGGQGGFGGGGG-----GGGGGGGGGG 422 SG ++ P G GG G G +GGG G GGG G G GG Sbjct: 17 SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG 66
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 112 bits (281), Expect = 5e-32 Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 10/255 (3%) Query: 18 SRSVKGLTVLVTGAASGMGRATARVFADEGAQVAVTDIDENGARAVAAAIVAAGGTARAW 77 ++ ++G +TGAA G+G A AR A +GA +A D + V +++ A A A+ Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 78 PLDLTDRDAISAVVSSAAAQFGGLDIVVNNAGISVRVAIDDETYDEAWAQGLAVMLTAQQ 137 P D+ D AI + + + G +DI+VN AG+ +R + DE W +V T Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 138 RVIRAALPHLRRSKHPRIVNIASTEALGATALHSAYSAAKAGVTGLTRSLAVELGRDGIT 197 R+ ++ + IV + S A +AY+++KA T+ L +EL I Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 198 VNCICPGPITTAMTARIPDEQKAIYARRR---------TALGRYGDPEEVAHITLSLCLP 248 N + PG T M + ++ + L + P ++A L L Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 249 AASFITGAVIPVDGG 263 A IT + VDGG Sbjct: 242 QAGHITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 105 bits (263), Expect = 1e-29 Identities = 73/268 (27%), Positives = 113/268 (42%), Gaps = 33/268 (12%) Query: 1 MNALDFSGRRVLVIGGSSGIGNGIAQAFRAQGARVAICGTRTRAADYRAEDGSDLEGL-- 58 MNA G+ + G + GIG +A+ +QGA +A A DY E + Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIA-------AVDYNPEKLEKVVSSLK 53 Query: 59 ------DYHQLDVSNAAAIEA----FAPGLDRLDVLVLAQGAVLYRRG---EFAMDGFRK 105 + DV ++AAI+ + +D+LV G + R G + + + Sbjct: 54 AEARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAG--VLRPGLIHSLSDEEWEA 111 Query: 106 VMEVNLISLMACATKFHGLLCDTK-GALIIVSSTAAYHSTMGNPAYNASKTGAVGLTRTL 164 VN + + + D + G+++ V S A AY +SK AV T+ L Sbjct: 112 TFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCL 171 Query: 165 AEAWAGDGIRVNGIAPGLVDTKMTKV----TTANPQRLEGALQR----IPLKRLGTPQDM 216 A IR N ++PG +T M Q ++G+L+ IPLK+L P D+ Sbjct: 172 GLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDI 231 Query: 217 AGAALFLASPLSSYIIGQTIVVDGGLIL 244 A A LFL S + +I + VDGG L Sbjct: 232 ADAVLFLVSGQAGHITMHNLCVDGGATL 259
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.032 Identities = 24/115 (20%), Positives = 34/115 (29%), Gaps = 22/115 (19%) Query: 506 REVGREQAKEPPK----ELNKPDTPVAATSPTETQQTAPGQ-----LPPQQRPKRLTTPG 556 +E + KE E K +T P T Q +P Q + PQ P R P Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 557 APGQTQQPNQNGQAGQGLRDFFGFGAPQQQQPAPARPP-----TARNPNAPPRPP 606 + Q N A P ++ + P T N+ P Sbjct: 1153 VNIKEPQSQTNTTADT--------EQPAKETSSNVEQPVTESTTVNTGNSVVENP 1199
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.8 bits (147), Expect = 1e-13 Identities = 36/190 (18%), Positives = 65/190 (34%), Gaps = 11/190 (5%) Query: 39 LGKALDLFRTTGFSATSLDDLSAATGMNRPSLYGAFGDKRELYI----KSYQRYRDNARA 94 L AL LF G S+TSL +++ A G+ R ++Y F DK +L+ S + Sbjct: 17 LDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELE 76 Query: 95 LMGEIFRNDWPVRRQ-LEQIFASALDIYLSGDEGPRGCFTVMTAGSEAVAD-PDIRAMVQ 152 + + V R+ L + S + +E R ++ E V + ++ + Sbjct: 77 YQAKFPGDPLSVLREILIHVLESTVT-----EERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 153 NALTELDKAFAHCFRRAKEKGDLPEQADPAVLAQMASATIHSIAVRARARVPRKALEAIV 212 N E + E LP A + I + L+ Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEA 191 Query: 213 AGAIDVMLGG 222 + ++L Sbjct: 192 RDYVAILLEM 201
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 26.3 bits (57), Expect = 0.033 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%) Query: 41 QPQAGQQGGGAGMAQGAGQQGGQSAAGQGQGQGQGQAQGSGQGQSQRQAGRS 92 Q QA +QG AG+A+G Q G QG +G AQG QG ++ ++ ++ Sbjct: 48 QMQAHEQGYQAGIAEGRQQ-------GHKQGYQEGLAQGLEQGLAEAKSQQA 92
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 154 bits (391), Expect = 3e-48 Identities = 88/248 (35%), Positives = 127/248 (51%), Gaps = 11/248 (4%) Query: 12 KVALITGAARGIGLATAKRFLHEGWRVALLDIEAKLLADSAAALKCPDRTL-ALHCDVAD 70 K+A ITGAA+GIG A A+ +G +A +D + L ++LK R A DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 71 AAMVADALERIATRFGRLDALVNNAGVARFASVMETSETDWQRILDVNLTGPFLCTRA-A 129 +A + + RI G +D LVN AGV R + S+ +W+ VN TG F +R+ + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 130 VPLMREHGGAIVNITSISAVRASTLRSAYGTSKAALAHLTKQLAVELASAGIRVNAVAPG 189 +M G+IV + S A T +AY +SKAA TK L +ELA IR N V+PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 190 PVETAMARAVHTPE------IRAD---YHDAIPLNRYGLEEELAEAIFFLSSERSSYITG 240 ET M ++ E I+ + IPL + ++A+A+ FL S ++ +IT Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 241 QVLAVDGG 248 L VDGG Sbjct: 249 HNLCVDGG 256
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.015 Identities = 10/65 (15%), Positives = 24/65 (36%) Query: 2 AKAETAKPDGQKPEAQKQESPKQEALKSDPAETVGRPADPQAPAQKLAVPSAEPAKPATA 61 + + + +P+A+ +P AD + PA++ + +P +T Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 62 ERKGD 66 G+ Sbjct: 1189 VNTGN 1193
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 52.5 bits (126), Expect = 2e-09 Identities = 33/142 (23%), Positives = 52/142 (36%), Gaps = 29/142 (20%) Query: 478 GTLNPPGTIRRGITVGNYDHLGGAGVSASGRGPTRDGRNKPDLVAPGFRVWSSGALGNQP 537 L PG I+VG + A ++ N+ DLVAPG + S+ G Sbjct: 186 DELGYPGCYNEVISVGAINFDRHASEFSNSN-------NEVDLVAPGEDILSTVPGGK-- 236 Query: 538 NPAGGAGAVFAVRVEKTGTSMSAPHVTGVCAQLLEAFPA-----ISSAQMGATLVAAASA 592 +GTSM+ PHV G A + + A ++ ++ A L+ Sbjct: 237 ------------YATFSGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIP 284 Query: 593 LAPSTSFDNQLGFGLIDAKEAD 614 L S + G GL+ + Sbjct: 285 LGNSPKME---GNGLLYLTAVE 303 Score = 49.5 bits (118), Expect = 2e-08 Identities = 38/197 (19%), Positives = 65/197 (32%), Gaps = 54/197 (27%) Query: 121 AALTGLGVVVGFVDRGGMDWKLEDFQVNGHTRILAIWDQSLRPVGTEKSPAAYGYGVEYD 180 G GV V +D G D D + + Sbjct: 36 NQTRGRGVKVAVLD-TGCDADHPDLKAR----------------------------IIGG 66 Query: 181 KTTIDGDLAGGPPLRHRCNPGSHATHVAGIAVGNGSSTGPNPAGGVFPAAKYVGVATNAD 240 + D D G P + N H THVAG + G VGVA AD Sbjct: 67 RNFTDDD-EGDPEIFKDYN--GHGTHVAGTIAATENENG------------VVGVAPEAD 111 Query: 241 IIYVEAVKIPGTTLTSSDRVAEAIKYIFEKAGKRPCVVNVSLGNNGGAHDSESVVERTID 300 ++ ++ + G+ + + I Y E+ ++++SLG + V++ + Sbjct: 112 LLIIKVLNKQGSGQYDW--IIQGIYYAIEQKVD---IISMSLGGPEDVPELHEAVKKAVA 166 Query: 301 RMLEANGRVLVKSAGNE 317 +++ +AGNE Sbjct: 167 S-----QILVMCAAGNE 178
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 29.3 bits (66), Expect = 0.030 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 57 IVVCDEHQDASAEQHAVIESLRGAGAR-VRAFFDPMQRIYGGG 98 ++VC E+ A+ ES +GAGAR V +PM G G Sbjct: 110 VLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAG 152
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 34.8 bits (80), Expect = 0.001 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 13/94 (13%) Query: 600 GQGLGSSLKDARPSRYSSA---GSRDQDWQLGRVDCSSMSDR-SRVL---PGT-IAAGVR 651 G G + + P Y+ G+ + D S S+ + V PG I + V Sbjct: 179 GDGDDRTDELGYPGCYNEVISVGAINFDRHA-----SEFSNSNNEVDLVAPGEDILSTVP 233 Query: 652 SGSRSHLQGTSAAAPLVARQLAEIFSTAPDEDIR 685 G + GTS A P VA LA I A R Sbjct: 234 GGKYATFSGTSMATPHVAGALALIKQLANASFER 267
>PF07132#Harpin protein (HrpN) Length = 356 Score = 42.8 bits (100), Expect = 2e-06 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 3 GAEMSQLGGMGGMGGMGGMGGMGGMGGMGGMGGMGGMGGMGGMGNLTATGLGAFLGAGA 61 M +G M G GG+GG G G G GG+ G G GG+G+ +GLG+ LG G Sbjct: 55 MTTMMFMGSMMG-GGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGL 112 Score = 38.5 bits (89), Expect = 4e-05 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 9 LGGMGGMGGMGGMGGMGGMGGMGGMGGMGGMGGM--GGMGNLTATGLGAFLGAGADP 63 GG+GG G G G GG+ G G GG+G G+G+ GLG LGAG + Sbjct: 66 GGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGLGGALGAGMNA 122 Score = 29.3 bits (65), Expect = 0.030 Identities = 21/74 (28%), Positives = 31/74 (41%) Query: 1 MGGAEMSQLGGMGGMGGMGGMGGMGGMGGMGGMGGMGGMGGMGGMGNLTATGLGAFLGAG 60 +GG S G GG+ G G GG+G G G +GG G + A A +G+ Sbjct: 73 LGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGLGGALGAGMNAMNPSAMMGSL 132 Query: 61 ADPVYDPVLVQGLQ 74 + +L G+ Sbjct: 133 LFSALEDLLGGGMS 146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.013 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 23/128 (17%) Query: 136 IRLPLMGGNSTSCEVTATRPSGPVL-ITTETRLD--ISAREVGDAD---RSITYEDLGGV 189 + +P + RP PVL ++ + I A E G D + +L G+ Sbjct: 55 VVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 190 DQ--ELQRVREMVELPLRQPELFERVGIDPP---------------RGILFSGPPGTGKT 232 + R +L + VG ++ +G GTGK Sbjct: 115 IGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKE 174 Query: 233 LLARAIAY 240 L+ARA+ Sbjct: 175 LVARALHD 182
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 29.8 bits (67), Expect = 0.027 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Query: 268 AIVNANMLRDLSRVGLSTEMVQEEFDEELDDEPAELADETSDDGSLFEQQLSDDVGLDEL 327 IV+ ML L R G +V++ E+ +E L DD ++ L+ + Sbjct: 141 TIVSHPMLTILKRSGWGIRVVEQGLSEK--EERVYLVFLPVDDE--NQEALARRINR-SG 195 Query: 328 PFPPDELDQWELR 340 F +EL QW LR Sbjct: 196 TFMSNELKQWPLR 208
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 122 bits (307), Expect = 1e-35 Identities = 77/261 (29%), Positives = 117/261 (44%), Gaps = 17/261 (6%) Query: 16 GHYALVTGAAQGIGRAIAVRFAEEGAHVAINYGGPSSSGDETLALVQAASAARGHAGRDH 75 G A +TGAAQGIG A+A A +GAH+A + ++ +V + A R Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIA----AVDYNPEKLEKVVSSLKAE----ARHA 59 Query: 76 VTVKADIGVEADITRMFETVLARWPRLDCLVNNAGFQRESPSEALDVDTYRAILEVNLNG 135 AD+ A I + + +D LVN AG R +L + + A VN G Sbjct: 60 EAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTG 119 Query: 136 AVLCARHALAHFVARGGGGNIINTSSVHQIIPKPGYLAYSISKSAMAGLTRTLALEFAGR 195 +R + + R G +I+ S +P+ AY+ SK+A T+ L LE A Sbjct: 120 VFNASRSVSKYMMDRRSG-SIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 196 GIRVNSVGPGAVDTPIN-AAWTDDPVKRAAVESH-------IPMGRVASPEEIAGVFAFL 247 IR N V PG+ +T + + W D+ ++ IP+ ++A P +IA FL Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 248 ASAEASYITGQTIYACGGITL 268 S +A +IT + GG TL Sbjct: 239 VSGQAGHITMHNLCVDGGATL 259
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.4 bits (84), Expect = 2e-04 Identities = 57/374 (15%), Positives = 123/374 (32%), Gaps = 46/374 (12%) Query: 44 VVLPTVQAEYAASRGAVSLAYTLTMFGFGLGGVIVGRITDRFGIVTAMALSIATTAAAYL 103 V LP + ++ + + T M F +G + G+++D+ GI + I + Sbjct: 35 VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV 94 Query: 104 LAGASVTLWQFQ-AVYFLIGLGSSVTFAPLM-AEASHWFERYRGLAVTIVAS-------- 153 + + + F+ G G++ A +M A + + RG A ++ S Sbjct: 95 IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 154 GNYVAGTV-----WP-------------PLVNYGVQQIGWRATHVALGVFCAVTMSALLL 195 G + G + W P + +++ H + +++ + Sbjct: 155 GPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFF 214 Query: 196 VLRARMGGSG------------AHDHSQAAPPQLTLPISTNALTVLLSIAAIACCVAMAM 243 +L + P + + N ++ + +A Sbjct: 215 MLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVA- 273 Query: 244 PQVHIVAYCGDLGYGV---AVGAQMLSLMMALGIVSRIGSGFLADRVGGMRTLLIGSLAQ 300 V +V Y + + +G+ ++ I+ G L DR G + L IG Sbjct: 274 GFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFL 333 Query: 301 GFALLFYLFFDGLTSLYLISGMFGLFQG--GIVPSYAIIVREAMPAREAATRVGIIIFAS 358 + L F TS ++ + + G + IV ++ +EA + ++ F S Sbjct: 334 SVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTS 393 Query: 359 VFGMSFGGWVSGVI 372 G + G + Sbjct: 394 FLSEGTGIAIVGGL 407
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 3e-04 Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 37/237 (15%) Query: 146 GEKSFEPGLLARANRGFLYIDEVNLLEDHLVDLLLDVAASGENVVERDG--LSIRHPARL 203 G ++ G +A G L++DE+ + LL V GE G IR R+ Sbjct: 218 GAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGE--YTTVGGRTPIRSDVRI 275 Query: 204 VLVGTGNPE----EGELRPQLLDRFGLSVEVKTPSDLPTRIEVIKRRDAFETDNAAFVAH 259 V + + +G R L R + V ++ P P R R + D V H Sbjct: 276 VAATNKDLKQSINQGLFREDLYYRLNV-VPLRLP---PLR----DRAE----DIPDLVRH 323 Query: 260 WEKEEAKQRKRIL----AAREHI------GSVKVADRELENAARLCMALGTDGLRGELTL 309 + ++ K+ + A E + G+V RELEN R AL + + Sbjct: 324 FVQQAEKEGLDVKRFDQEALELMKAHPWPGNV----RELENLVRRLTALYPQDVITREII 379 Query: 310 ---MRAARAAAALDGAKAVDDGHLKTVAPMALRHRLRRNPLDDSGSSVRVERALNEL 363 +R+ + ++ A A + A + + D S +R L E+ Sbjct: 380 ENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEM 436
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.018 Identities = 42/240 (17%), Positives = 68/240 (28%), Gaps = 14/240 (5%) Query: 85 GLLAEANGGMLIAVMAERMAPSAVAHLSAALDTGAVSIERDGLSLRAPARVGLIA----- 139 G +A GG L M A L L G G + V ++A Sbjct: 225 GRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGE--YTTVGGRTPIRSDVRIVAATNKD 282 Query: 140 LDEGIDDERVSPALADRLAC-HVDLSTV-ARADLGESLFKSSDIAAARALLPQVRLSEEA 197 L + I+ L RL + L + RA+ L + A + L R +EA Sbjct: 283 LKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEA 342 Query: 198 IAALTTTAVALGIDSLRAPLLACRIARIAAALDGETDVAEQHIACAARLVLAPRATRLPA 257 + + + L + R+ A + E + + A Sbjct: 343 LELMKAHPWPGNVRELE-----NLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAA 397 Query: 258 NEDDADSPEPPEPQNEQAENAEDDRANGGPLEDRVLEAAQAAIPFDLLKRLQDERAMRAR 317 + E Q + D L DRVL + + L + + A Sbjct: 398 RSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAAD 457
>PF06580#Sensor histidine kinase Length = 349 Score = 40.2 bits (94), Expect = 2e-05 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 8/51 (15%) Query: 390 IRNALDHGIEPPAERLAAGKPRQGTINLSAAQRSGRIVIEVSDDGRGINRE 440 + N + HGI P+ G I L + +G + +EV + G + Sbjct: 264 VENGIKHGIAQ--------LPQGGKILLKGTKDNGTVTLEVENTGSLALKN 306
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.1 bits (182), Expect = 1e-16 Identities = 44/185 (23%), Positives = 71/185 (38%), Gaps = 24/185 (12%) Query: 1 MSAIRVLIVDDSAFVRQVLTDILSSDPAIQVVGAAPNPIVARDMIKSLNPDVLTLDIEMP 60 M+ +L+ DD A +R VL LS V + N I + + D++ D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALS-RAGYDVRITS-NAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 RMDGLAFLDKIMALRP-MPVLMISSLTQKGADTAIRALEMGAFDCVAKPVVGLVEGLPAM 119 + L +I RP +PVL++S+ TAI+A E GA+D + KP Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQN--TFMTAIKASEKGAYDYLPKPFD--------- 107 Query: 120 RNEIVSKVKAASVAKIRTRSGEQVRPIQRPGVSYNTSEKIIAIGASTGGVEALQELLMAF 179 E++ + A R S + + +G S E + L Sbjct: 108 LTELIGIIGRALAEPKRRPSKLEDDSQDGMPL----------VGRSAAMQEIYRVLARLM 157 Query: 180 PSDAP 184 +D Sbjct: 158 QTDLT 162
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.0 bits (174), Expect = 2e-15 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 12/146 (8%) Query: 8 ARILIADDDPLCRRLVAGVLRAQKFTNIEFAEGGLSTMEQVRRFRPDLLLLDMQMPDMSG 67 A IL+ADDD R ++ L + + + + DL++ D+ MPD + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 68 LDVCREIRAQADFADAPILVQTATVDRKKMGELFAAGASDFLSKPINPSELIARVVVHLE 127 D+ I+ D P+LV +A + GA D+L KP + +ELI + Sbjct: 63 FDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG---- 116 Query: 128 RWNSLRALRDYRERISGELEAARRMQ 153 RAL + + R S + ++ Sbjct: 117 -----RALAEPKRRPSKLEDDSQDGM 137
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.1 bits (156), Expect = 9e-13 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 3/115 (2%) Query: 648 ILVAEDSPIIATLINSLLVKQGFKPTMVGNGSKAVAAVSQKSYDLVLMDVQMPEMDGISA 707 ILVA+D I T++N L + G+ + N + ++ DLV+ DV MP+ + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 708 TEAIRRLPGPERHVPIIALTANALVGQRETYLAAGMNDYVTKPIQPALLFAAIRR 762 I++ +P++ ++A G DY+ KP L I R Sbjct: 66 LPRIKKA---RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 57.4 bits (138), Expect = 2e-10 Identities = 52/271 (19%), Positives = 95/271 (35%), Gaps = 15/271 (5%) Query: 239 GAHADLNDAAHTHDVAVREMAERTREQAESARIQAIRSSHLPALREAEARAAATMQRLKN 298 L++ A A+ + + S+ + L +A AA L+ Sbjct: 103 KNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEK 162 Query: 299 ARDLLDREEVRAKERAGELDRRLMQLTADVAREQQQNQDAQVALQRLETEDAELKEEIKA 358 A + + L+ L A A ++ + A + L+ E A Sbjct: 163 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 222 Query: 359 RVEMRSGVDERVAEAEALLLETERQFTELTTQLADLTARRNQLEANVRSHRERLARLDQD 418 ++ +++ + A + L + A L AR+ +LE + Sbjct: 223 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 282 Query: 419 IANVRADEERLAQETAHLGD--------LDTLAAALEAAEEAEAQAEAAVQT-------N 463 I + A++ L E A L +L L+A+ EA+ Q EA Q + Sbjct: 283 IKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 342 Query: 464 EAAQANARQKLEASRAPLADAEKRAQRLETE 494 EA++ + R+ L+ASR E Q+LE + Sbjct: 343 EASRQSLRRDLDASREAKKQLEAEHQKLEEQ 373 Score = 48.5 bits (115), Expect = 1e-07 Identities = 63/347 (18%), Positives = 122/347 (35%), Gaps = 18/347 (5%) Query: 639 DIEAELEQARIDAAGKRQALESAEAEVKAATAAESAAREAWRAAQREVNSARERHANAER 698 ++ EL A+ ++L ++++ A ++ +A A + + E Sbjct: 89 ELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEA 148 Query: 699 EINRHSARKSALVEASTRLAHDRAEIAELHQNALEAIEELPATTEADGRLAAVRAEIETK 758 E +ARK+ L +A + + + L A R A + +E Sbjct: 149 EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA------RQAELEKALEGA 202 Query: 759 RRAAAQVRAEAQALAREAELADRRVQAIINERNDWFNRIRGAGSQIATIEARIAEVRDER 818 + A+ + L E R + N ++I T+EA A + + Sbjct: 203 MNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQ 262 Query: 819 AELDNAPEIFAEKRSALIDELAIAEEERQVAADALAEAETAMGDTDRAAKASLEALSKSR 878 AEL+ A E +A ++ E E+ A+ E + ++ L SR Sbjct: 263 AELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASR 322 Query: 879 EA-------AARAEERLESAKRRVADVEREIHDMLECEPNAVAAMAEIGPDTQLPPLHEI 931 EA + EE+ + ++ + R++ E + A ++ ++ Sbjct: 323 EAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS----- 377 Query: 932 EDSLEKLRRDRERLGAVNLRAEEELTEVEGSHTALTTERDDLVEAIK 978 E S + LRRD + + E+ L E AL +L E+ K Sbjct: 378 EASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKK 424 Score = 47.8 bits (113), Expect = 2e-07 Identities = 46/228 (20%), Positives = 83/228 (36%), Gaps = 8/228 (3%) Query: 281 ALREAEARAAATMQRLKNARDLLDREEVRAKERAGELDRRLMQLTADVAREQQQNQDAQV 340 AL +A ++ N + + L R L + + Sbjct: 187 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 246 Query: 341 ALQRLETEDAELKEEIKARVEMRSGVDERVAEAEALLLETERQFTELTTQLADLTARRNQ 400 ++ LE E A L+ + G A + E + L + ADL + Sbjct: 247 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV 306 Query: 401 LEANVRSHRERLARLDQDIANVRADEERLAQET-AHLGDLDTLAAALEAAEEAEAQAEAA 459 L AN +S R L + + A+ ++L ++ +L L+A+ EA+ Q EA Sbjct: 307 LNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAE 366 Query: 460 VQT-------NEAAQANARQKLEASRAPLADAEKRAQRLETEARTISK 500 Q +EA++ + R+ L+ASR EK + ++ + K Sbjct: 367 HQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEK 414 Score = 46.6 bits (110), Expect = 5e-07 Identities = 43/274 (15%), Positives = 91/274 (33%), Gaps = 1/274 (0%) Query: 635 ARLIDIEAELEQARIDAAGKRQALESAEAEVKAATAAESAAREAWRAAQREVNSARERHA 694 A + A G + A++K A ++A ++ + A Sbjct: 148 AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFST 207 Query: 695 NAEREINRHSARKSALVEASTRLAHDRAEIAELHQNALEAIEELPAT-TEADGRLAAVRA 753 +I A K+AL L I+ L A + R A + Sbjct: 208 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 267 Query: 754 EIETKRRAAAQVRAEAQALAREAELADRRVQAIINERNDWFNRIRGAGSQIATIEARIAE 813 +E + A+ + L E + + ++ + + + Sbjct: 268 ALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQ 327 Query: 814 VRDERAELDNAPEIFAEKRSALIDELAIAEEERQVAADALAEAETAMGDTDRAAKASLEA 873 + E +L+ +I R +L +L + E ++ + E ++ + ++ Sbjct: 328 LEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD 387 Query: 874 LSKSREAAARAEERLESAKRRVADVEREIHDMLE 907 L SREA + E+ LE A ++A +E+ ++ E Sbjct: 388 LDASREAKKQVEKALEEANSKLAALEKLNKELEE 421 Score = 39.7 bits (92), Expect = 7e-05 Identities = 40/214 (18%), Positives = 79/214 (36%), Gaps = 2/214 (0%) Query: 281 ALREAEARAAATMQRLKNARDLLDREEVRAKERAGELDRRLMQLTADVAREQQQNQDAQV 340 A A L+ + L++ A + ++ L A+ A + + D + Sbjct: 243 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEH 302 Query: 341 ALQRLETEDAELKEEIKARVEMRSGVDERVAEAEALLLETERQFTELTTQLADLTARRNQ 400 Q L L+ ++ A E + ++ + E +E L L + Q Sbjct: 303 QSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQ 362 Query: 401 LEANVRSHRERLARLDQDIANVRADEERLAQETAHL-GDLDTLAAALEAAEEAEAQAEAA 459 LEA + E+ + ++R D + + + L+ + L A E+ + E + Sbjct: 363 LEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEES 422 Query: 460 VQTNEAAQANARQKLEASRAPLADAE-KRAQRLE 492 + E +A + KLEA L + K+A+ L Sbjct: 423 KKLTEKEKAELQAKLEAEAKALKEKLAKQAEELA 456 Score = 38.5 bits (89), Expect = 1e-04 Identities = 47/266 (17%), Positives = 96/266 (36%), Gaps = 22/266 (8%) Query: 632 AERARLIDIEAELEQARIDAAGKRQALESAEAEVKAATAAESAAREAWRAAQREVNSARE 691 A AR ++E LE A + +++ EAE A A ++ +A A + Sbjct: 187 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 246 Query: 692 RHANAEREINRHSARKSALVEASTRLAHDRAEIAELHQNALEAIEELPATTEA------- 744 + E E AR++ L +A + + + L A Sbjct: 247 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV 306 Query: 745 -DGRLAAVRAEIETKRRAAAQVRAEAQALAREAELADRRVQAIINERNDWFNRIRGAGSQ 803 + ++R +++ R A Q+ AE Q L + ++++ Q Sbjct: 307 LNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQ--------------SLRRD 352 Query: 804 IATIEARIAEVRDERAELDNAPEIFAEKRSALIDELAIAEEERQVAADALAEAETAMGDT 863 + ++ E +L+ +I R +L +L + E ++ AL EA + + Sbjct: 353 LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAAL 412 Query: 864 DRAAKASLEALSKSREAAARAEERLE 889 ++ K E+ + + A + +LE Sbjct: 413 EKLNKELEESKKLTEKEKAELQAKLE 438 Score = 37.4 bits (86), Expect = 3e-04 Identities = 46/357 (12%), Positives = 113/357 (31%), Gaps = 32/357 (8%) Query: 663 AEVKAATAAESAAREAWRAAQREVNSARERHANAEREINRHSARKSALVEASTRLAHDRA 722 +A A S Q + + + + + S AL + + L + + Sbjct: 37 TNEVSAVATRSQTDTLE-KVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELS 95 Query: 723 EIAELHQNALEAIEELPATTEADGRLAAVRAEIETKRRAAAQVRAEAQALAREAELADRR 782 E + +++ E + + + A +A + A + + + + Sbjct: 96 NAKEKLRKNDKSLSEKASKIQE------LEARKADLEKALEGAMNFSTADSAKIKTLEAE 149 Query: 783 VQAIINERNDWFNRIRGAGSQIATIEARIAEVRDERAELDNAPEIFAEKRSALIDELAIA 842 A+ + D + GA + A+I + E+A L+ + ++ Sbjct: 150 KAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTAD 209 Query: 843 EEERQVAADALAEAETAMGDTDRAAKASLEALSKSREAAARAEERLESAKRRVADVEREI 902 + + A D ++A + ++ + E + + R A++E+ + Sbjct: 210 SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL 269 Query: 903 HDMLECEPNAVAAMAEIGPDTQLPPLHEIEDSLEKLRRDRERLGAVNLRAEEELTEVEGS 962 + ++ L ++ L A E + + + Sbjct: 270 EGAMNFSTADS-------------------AKIKTLEAEKAALEAEKADLEHQSQVLNAN 310 Query: 963 HTALTTERDDLVEAIKRLRQGIQSLNKE------ARERLQASFETVNDHFKRLFTEL 1013 +L + D EA K+L Q L ++ +R+ L+ + + K+L E Sbjct: 311 RQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEH 367
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 95.6 bits (238), Expect = 1e-24 Identities = 70/345 (20%), Positives = 133/345 (38%), Gaps = 62/345 (17%) Query: 12 RVFVAGHRGLVGSALVRRLASEGVE-------------------LQTVSRG-----EVDL 47 + V G G +G + +RL G + L+ +++ ++DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 48 SDQAAVFAWFARAKPQVVFLAAAKVGGIVANNTLRAEFIYDNIAIATNVIHAAHVNGVEK 107 +D+ + FA + VF++ ++ + A + N+ N++ N ++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHA-YADSNLTGFLNILEGCRHNKIQH 120 Query: 108 LMFLGSSCIYPKLAAQPLREDAMLTGPLEPTNEPYAIAKIAGIKMVEAYRSQYGADFINV 167 L++ SS +Y P D + P+ YA K A M Y YG + Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPV----SLYAATKKANELMAHTYSHLYGLPATGL 176 Query: 168 MPTNLYGP-GDNYHPEYSHVVAALIRRFHEAKLADAPEVIVWGTGKPRREFLYVDDMADA 226 +YGP G P+ + + +F +A L + V+ GK +R+F Y+DD+A+A Sbjct: 177 RFFTVYGPWGR---PDMA------LFKFTKAMLEGKS-IDVYNYGKMKRDFTYIDDIAEA 226 Query: 227 CVHLMKTYSEPG------------------LVNIGTGEDISIADFAAMVATAVGYEGRIR 268 + L + NIG + + D+ + A+G E + Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKN 286 Query: 269 FDPSRPDGTPRKLLDVGRL-TSLGWSATTSLQDGIRGA---YRAY 309 P +P D L +G++ T+++DG++ YR + Sbjct: 287 MLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 94.5 bits (235), Expect = 5e-24 Identities = 69/337 (20%), Positives = 120/337 (35%), Gaps = 20/337 (5%) Query: 3 LITGVTGQDGAYLSEYLLGLGYTVHGIKRRSSSFNTARIDHLYEDRHE--GNTPFLLHYG 60 L+TG G G ++S+ LL G+ V GI + N L + R E F H Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGI----DNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 61 DMTDSTNLIRLVQQIRPTEIYNLAAQSHVGVSFESPEYTANSDALGVLRLLEAIRILGME 120 D+ D + L ++ + V S E+P A+S+ G L +LE R ++ Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 121 RETRFYQASTSELYGLVQETPQRESTPF-YPRSPYGCAKLYGYWITVNYREAYGMFAANG 179 AS+S +YGL ++ P +P S Y K + Y YG+ A Sbjct: 120 ---HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL 176 Query: 180 ILFNHESPVRGETFVTRKITRAVARIEMGLESTLYLGNLEAKRDWGHARDYVEGMHQILQ 239 F P K T+A+ G +Y + KRD+ + D E + ++ Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAMLE---GKSIDVY-NYGKMKRDFTYIDDIAEAIIRLQD 232 Query: 240 MDEPDDFVLATGETRSVREFVELAFAEVGRQIEWSGREIEEVGVDRESGQTVVRIDPRY- 298 + D +G S E+ + + + Sbjct: 233 VIPHADTQWTVETGTPAASIAPYRVYNIGNS---SPVELMDY-IQALEDALGIEAKKNML 288 Query: 299 -FRPTEVDLLVGDASKARDKLGWRPKRSLSELIREMV 334 +P +V D + +G+ P+ ++ + ++ V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFV 325
>cloacin#Cloacin signature. Length = 551 Score = 29.3 bits (65), Expect = 0.021 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 48 GGSGSGNNG-GGYGGGGKGGGGHG 70 GGSG GN G G GGG G GG+ Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 28.9 bits (64), Expect = 0.023 Identities = 10/22 (45%), Positives = 11/22 (50%) Query: 49 GSGSGNNGGGYGGGGKGGGGHG 70 G GSG+ GG G G GG Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGN 68 Score = 28.9 bits (64), Expect = 0.025 Identities = 13/23 (56%), Positives = 14/23 (60%) Query: 48 GGSGSGNNGGGYGGGGKGGGGHG 70 GGSGSG + GG G G GGG Sbjct: 48 GGSGSGIHWGGGSGHGNGGGNGN 70
>cloacin#Cloacin signature. Length = 551 Score = 41.2 bits (96), Expect = 4e-06 Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 7/56 (12%) Query: 55 GSGGEHSWGGWGS----WRGGHHRGGGGHHGGGHHGDGHHGGGHSGGGAGGGHGNL 106 GG GW S W GG G G H GG G G+ GG + GG G GNL Sbjct: 29 VGGGASDGSGWSSENNPWGGGS---GSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 40.5 bits (94), Expect = 7e-06 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Query: 51 GSDWGSGGEHSWGGWGSWRGGHHRGGGGHHGGGHHGDGHHGGGHSGGGAGG 101 GS W S E++ G GS G H GG GH GG +G+ GG SG G Sbjct: 36 GSGWSS--ENNPWGGGSGSGIHWGGGSGHGNGGGNGN---SGGGSGTGGNL 81 Score = 30.1 bits (67), Expect = 0.011 Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 76 GGGHHGGGHHGDGHHGGGHSGGGAGGG 102 G GH+ G H G+ GG +G G GGG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGG 32
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 210 bits (537), Expect = 9e-61 Identities = 123/528 (23%), Positives = 233/528 (44%), Gaps = 42/528 (7%) Query: 262 IFPVQNSNPEPIIAELEKIIDSGEGGVSQHVVRFHPIGRMNAILAVARKPEILQRIETWI 321 + P+ N + L ++ D+ G VV + P + +L + + +++R+ T + Sbjct: 131 VVPLTNVAARDLAPLLRQLNDNAGVG---SVVHYEP----SNVLLMTGRAAVIKRLLTIV 183 Query: 322 GRLDNTNNARSSIHVYYVKYGEARQIARALNEIFGSSTASAASVDSTGGSIAPGSGLASS 381 R+DN + S+ + + A + + + E+ ++ SA + + + + Sbjct: 184 ERVDNAGDR--SVVTVPLSWASAADVVKLVTELNKDTSKSALPG-------SMVANVVAD 234 Query: 382 SSPMSRLSVGTPGQSGGGYGSSARTGTAAGGGVDMGSNAATGTAA----QGQAGSLFDGP 437 + L G P +S + A +D T +A L + Sbjct: 235 ERTNAVLVSGEP--------NSRQRIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVL 286 Query: 438 AGASTGGAGRVGGTGSIGGVLEGVRITADSVNNSLLIYASQEQYSIVERTVRQLDRPQRQ 497 G S+ + + + + I A N+L++ A+ + + +ER + QLD + Q Sbjct: 287 TGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQ 346 Query: 498 VAIEATIAEVTLTDDLQFGVQSYIMS------RDLGLKPDTGSFGDAASTALATAGNVVL 551 V +EA IAEV D L G+Q + + GL P + + A + L Sbjct: 347 VLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGL-PISTAIAGANQYNKDGTVSSSL 405 Query: 552 NRAIPGFNFLVGSATTP--RLILSALHAVTDVKVLSNPSLVVIDNQVATLQVGNEIPIQT 609 A+ FN + ++L+AL + T +L+ PS+V +DN AT VG E+P+ T Sbjct: 406 ASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLT 465 Query: 610 GTATVLTGNNTVASTTDYRSTGIILRVVPRINANGNVRLDVEQEISNALNGTNGGNGATN 669 G+ T N + +T + ++ GI L+V P+IN +V L++EQE+S+ + + + Sbjct: 466 GSQTTSGDN--IFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLG 523 Query: 670 SLTPTVATRKLRSSVAVASGQTVLLAGLISDTQNRTRNGIPGIDQIPGIGDLFSQSGNNV 729 T TR + ++V V SG+TV++ GL+ + + T + +P + IP IG LF + V Sbjct: 524 ---ATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKV 580 Query: 730 QRTELIIFIRPQIIRDGVDANFVAEEVRSKLRGSLGNAESRQGSATRL 777 + L++FIRP +IRD + + + + ++ + L Sbjct: 581 SKRNLMLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKENNDAML 628 Score = 103 bits (258), Expect = 6e-25 Identities = 61/279 (21%), Positives = 112/279 (40%), Gaps = 14/279 (5%) Query: 100 ELNFENAAIASVAKIVLGDMLGVGYVVDTRVQGTISLSSGRPIPKSDVLFALESALRVAG 159 +F+ I V + L ++D V+GTI++ S + + S L V G Sbjct: 31 SASFKGTDIQEFINTVSKN-LNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLDVYG 89 Query: 160 IALI-RDNGAYRLMPQADAVGTGNVDTADRTEPGYG----ISVVPVLNVSAQMLTKLVEN 214 A+I +NG +++ DA T V A PG G VVP+ NV+A+ L L+ Sbjct: 90 FAVINMNNGVLKVVRSKDA-KTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPLLRQ 148 Query: 215 FGTKQGMLRA--DPSRNLIIVQGTGSERRNAVDLLLSFDMDWMRGQSVGIFPVQNSNPEP 272 G+ N++++ G + + + ++ +D +SV P+ ++ Sbjct: 149 LNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIV--ERVDNAGDRSVVTVPLSWASAAD 206 Query: 273 IIAELEKIIDSGEGGV--SQHVVRFHPIGRMNAILAVARKPEILQRIETWIGRLDNTNNA 330 ++ + ++ V R NA+L V+ +P QRI I +LD Sbjct: 207 VVKLVTELNKDTSKSALPGSMVANVVADERTNAVL-VSGEPNSRQRIIAMIKQLDRQQAT 265 Query: 331 RSSIHVYYVKYGEARQIARALNEIFGSSTASAASVDSTG 369 + + V Y+KY +A + L I + + + Sbjct: 266 QGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVA 304
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 31.4 bits (71), Expect = 8e-04 Identities = 14/46 (30%), Positives = 27/46 (58%) Query: 16 QSGMTMLEMVCVLAIVAMLAAIALPMLPSSTSPSRLEAYAIEIAAL 61 Q G T+LE++ V+ I+ +LA++ +P L + + + +I AL Sbjct: 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVAL 52
>PilS_PF08805#PilS N terminal Length = 185 Score = 26.8 bits (59), Expect = 0.022 Identities = 7/32 (21%), Positives = 15/32 (46%) Query: 8 DHGSNAGFALIEALVALLVIAITLSAIGSLAA 39 + G L+E L+ + VI + ++ L + Sbjct: 21 KKEQDKGATLMEVLLVVGVIVVLAASAYKLYS 52
>PF05860#haemagglutination activity domain. Length = 117 Score = 52.9 bits (127), Expect = 8e-10 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 8/106 (7%) Query: 147 GANGPTQTTTGSQTTIDIQQTQQKALLYWDSFNVGANTTVNFRQASADWIAFNRVASMVA 206 N T ++ Q + F+V + T F + +RV Sbjct: 10 PINSNITTEGNTRIIERGTQAGSNLFHSFQEFSVPTSGTAFFNNPTNIQNIISRVTGGS- 68 Query: 207 PSSLLASRIDGNINAKGA--VYVINSNGIIFGAGSQVNVHTLIASS 250 S IDG I A +++IN NGIIFG +++++ S Sbjct: 69 -----VSNIDGLIRANATANLFLINPNGIIFGQNARLDIGGSFVGS 109
>PERTACTIN#Pertactin signature. Length = 922 Score = 34.7 bits (79), Expect = 0.001 Identities = 40/182 (21%), Positives = 56/182 (30%), Gaps = 24/182 (13%) Query: 194 FDGQTSITLPGSPSLVVAEGGELSWSVWVKMAAPQPRAV-----LYTRSEGANSFTIGLD 248 F L S LVV +WV+ + +P + + T A +FT+ Sbjct: 480 FRMNVFADLGLSDKLVVMRDASGQHRLWVRNSGSEPASGNTMLLVQTPRGSAATFTL--- 536 Query: 249 NGVPFVEILNNGATQRANGAAALDAGTWRHLAVTAKSNQVTLFVDGNPVAPIPAALPTMT 308 AN +D GT+R+ + Q +L P AP PA P Sbjct: 537 ----------------ANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQ 580 Query: 309 GTAQIGRAVPAASSAADAPSASAVVAPAADAPAAASSDPAAPAAAPPAGFVGDIDELQIA 368 Q + A P A AA AA G VG L A Sbjct: 581 PGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYA 640 Query: 369 KA 370 ++ Sbjct: 641 ES 642
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 38.8 bits (90), Expect = 8e-06 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 5/160 (3%) Query: 59 EMTIVAIVPLPPPPP-PPPPPPPQEQQPEQKMVEQTPVKQEIIEEKPVDIPKDAPPDAPN 117 +T+V L PP PPP P E +PE + + + P + ++ EKP PK P Sbjct: 46 SVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKK 105 Query: 118 NDAPPGP--LGLDDAGKGPGELLGRPGGRGLIGGGGGGGGGGSRWGWYASIVQTQIEAAL 175 P ++ P E S ++ + Q + Sbjct: 106 VQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPA 165 Query: 176 RANEKTRRAVMQIQVRLWSDAGGRINRVQLVTSTGNTELD 215 RA + R Q++V+ GR++ VQ++++ + Sbjct: 166 RA--QALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFE 203 Score = 27.6 bits (61), Expect = 0.037 Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 1/84 (1%) Query: 52 EPPRKVNEMTIVAIVPLPPPPPPPPPPPPQEQQPEQKMVEQTPVKQEIIEEKPVDIPKDA 111 EP +V P P P P P P ++ EQ + PV+ P Sbjct: 74 EPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPA-R 132 Query: 112 PPDAPNNDAPPGPLGLDDAGKGPG 135 + A P+ +G Sbjct: 133 LTSSTATAATSKPVTSVASGPRAL 156
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.6 bits (66), Expect = 0.037 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 21/142 (14%) Query: 35 PAVAQDDSAPVRRPSVSRNAAPSANATVNLINLLVKQGVLTDEQATALVKQADDEAYVAR 94 P Q PV P P ++ K + V+Q + Sbjct: 63 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDV---- 118 Query: 95 QAVSTATSRADDAAKTAAAAANATSPPGTKRVTYVPEIVKKQLRDEIRQEVMAKAEKENW 154 + V + + + A ++ + +K VT V + R++ + Sbjct: 119 KPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQ------------ 166 Query: 155 ASPGKYPEWAQRLRFYGDVRVR 176 YP AQ LR G V+V+ Sbjct: 167 -----YPARAQALRIEGQVKVK 183
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 70.1 bits (171), Expect = 2e-16 Identities = 56/197 (28%), Positives = 77/197 (39%), Gaps = 19/197 (9%) Query: 8 ALITGAGRATGIGFEVARQLGQRGFHIILTARKAADARARADELSAMAVRAEGHGMDITD 67 A ITGA + GIG VAR L +G HI L A A AE D+ D Sbjct: 11 AFITGAAQ--GIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 68 PDATAKLAALLDERFGRLDVLVNNAATL--GRYDETASNADLGEVRANFESTLFGAWAVA 125 A ++ A ++ G +D+LVN A L G + E A F G + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDE----EWEATFSVNSTGVFNAS 124 Query: 126 QTFLPLLRNSAHGRLVNVSSGAGSHSDPEFGLATAAPMPASYGVAKAALNALTVKLARE- 184 ++ + + G +V V S P + A+Y +KAA T L E Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPA--GVPRTSM-------AAYASSKAAAVMFTKCLGLEL 175 Query: 185 -NPGLRVNAVCPGFTAT 200 +R N V PG T T Sbjct: 176 AEYNIRCNIVSPGSTET 192
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.2 bits (96), Expect = 9e-06 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 2/101 (1%) Query: 186 RREARLQQKLAEATEVVEELKREVDADPEASNRRIRAARERAAREHKQKVEAAQAALEEI 245 + E + A+ EV +E K V A+ + + + + + + K A E+ Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 246 KRKRQKLEE--KGGNGKKPKEPRASTTDPQARRMKMADAGF 284 K + +K +E K + PK+ ++ T PQA + D Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 56.9 bits (137), Expect = 1e-11 Identities = 55/205 (26%), Positives = 77/205 (37%), Gaps = 34/205 (16%) Query: 38 QAIYDWTGFYIGGHLGGAFAGGNGLEGNNAR-----FLGGVQGGFDYQFAPNWVLGIEAQ 92 QA +Y G LG + G NN G GG YQ P +G E Sbjct: 20 QAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGG--YQVNPY--VGFEMG 75 Query: 93 YSWMDRNTTNFGFPGATVVTSTGANQLGSVTGRLGYTWGPAL-LYAK-GGYAWRDGNGLG 150 Y W+ R +V Q +T +LGY L +Y + GG WR Sbjct: 76 YDWLGRMPYK-----GSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWR--ADTK 128 Query: 151 VNVAGVPAGFTTSGNAKDGYTVGAGLEYMFAPNWSAKAEYQY-YNFGNTTFTGGPAPVVG 209 NV G + + G+EY P + + EYQ+ N G+ A +G Sbjct: 129 SNVYG------KNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGD-------AHTIG 175 Query: 210 SRFNNEDHTVKVGVNYRFGWGGPVA 234 +R +N + +GV+YRFG G Sbjct: 176 TRPDN--GMLSLGVSYRFGQGEAAP 198
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 42.3 bits (99), Expect = 2e-06 Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 46/189 (24%) Query: 16 TTSGY-GSGYLIAPDLVLTACHVIADLTRSPPDDLDIDIRTIAHFNARL----PFQ--KA 68 T + SG ++ D +LT HV+ P A +A P A Sbjct: 98 PTGTFIASGVVVGKDTLLTNKHVVDATHGDP-------HALKAFPSAINQDNYPNGGFTA 150 Query: 69 KLIWPPPARWQELADLDIALLEITPDPVTK---KAAQPIHFGTDGLPRDKMLQISFAGFP 125 + I D+A+++ +P+ K + +P + + I+ G+P Sbjct: 151 EQITKYSGE------GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQ-VNQNITVTGYP 203 Query: 126 RLMTIRNSDNRDVRQLFGEAAPATGVKQNI--YTIDINKGRPAKSDEEWKGASGAAVF-S 182 ++ V ++ T +K Y + G SG+ VF Sbjct: 204 --------GDKPVATMWESKGKITYLKGEAMQYDLSTTGGN-----------SGSPVFNE 244 Query: 183 QGQLIAVLT 191 + ++I + Sbjct: 245 KNEVIGIHW 253
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.9 bits (88), Expect = 6e-05 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 13 TKEPKLPEPIEPHFRKSSGYI-PSPALKAAVDVAMILGQ---PLLLTGEPGTGKTTLARA 68 + + P +E + + S A++ V L Q L++TGE GTGK +ARA Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 69 V 69 + Sbjct: 180 L 180
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 30.5 bits (69), Expect = 0.008 Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 24/170 (14%) Query: 31 RLRVAELAFEEKRIAAERLAKA-GASNGQLDRAESKM--QVVEQKAKALRAAVGECDEQI 87 + + + + + E+L A S +L + + + KA+ A + Sbjct: 26 NVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEASMGADKAEIFAA------HLL 79 Query: 88 ILAERALAEAIAQRDRDRAANEIEAVASAIEQAVPRFEIGAAALVDAVTRGRAALTEASR 147 +L + L + I + + N A+ + V FE ++ + + RAA Sbjct: 80 VLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFE----SMDNEYMKERAA------ 129 Query: 148 FAADVDDIRREVLSAAELICWELRAAATRTRAGNINVALLSAPELRQLPP 197 D+ D+ + VL LI E + AT I L+ + QL Sbjct: 130 ---DIRDVSKRVL--GHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNK 174
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 28.2 bits (62), Expect = 0.017 Identities = 9/16 (56%), Positives = 13/16 (81%) Query: 105 LIHCRAGIGRSAVIAA 120 +IHCRAG+GR+A + Sbjct: 400 VIHCRAGVGRTAQLIG 415
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.9 bits (64), Expect = 0.005 Identities = 11/40 (27%), Positives = 18/40 (45%) Query: 75 PAARQEEEAREAEAAKWEAYCKPVFRRDEYGIRRASYAHA 114 A+ EE+AR+ A +A+ + RR E +A Sbjct: 131 RLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQ 170
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 32.3 bits (73), Expect = 0.006 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 464 APPKPPSASEDGIVEPAPVDQDPEADTVVPPAGRPGSAFPDLEIPP---FLRRTSQQAEM 520 APP P A + G P P PEA PPAGR SA + + L T AE Sbjct: 571 APPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAES 630 Query: 521 D-LARR 525 + L++R Sbjct: 631 NALSKR 636
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 68.3 bits (167), Expect = 4e-15 Identities = 45/170 (26%), Positives = 63/170 (37%), Gaps = 31/170 (18%) Query: 1 MRILVTGAAGFIGSALLRRLLADATIAEITAIDLAAQPWSSLDPRLR------------- 47 M+ LVTGAAGFIG + +RLL ++ ID D L+ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGH--QVVGIDNLN---DYYDVSLKQARLELLAQPGFQ 55 Query: 48 WISGAL-DAGMLAPLGA-ASFDLVFHLASVPGARAEAE-PGLSRRVNLDASLDLLQWLAG 104 + L D + L A F+ VF R E P NL L++L+ Sbjct: 56 FHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILE-GCR 114 Query: 105 SGHRPRVVYASSIAVYG-----PLGEAGVSSTTEPRPAATYGAHKRMVEV 149 ++YASS +VYG P P + Y A K+ E+ Sbjct: 115 HNKIQHLLYASSSSVYGLNRKMPFSTDDSV----DHPVSLYAATKKANEL 160
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 89.0 bits (220), Expect = 3e-23 Identities = 59/189 (31%), Positives = 87/189 (46%) Query: 3 LDGKVALVTGAGSGIGRATALALARRGSHLVLFGRTRAKLAETAALAASHGVRTETLGGN 62 ++GK+A +TGA GIG A A LA +G+H+ KL + + + E + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 VSDEAACASTLALARERFGRLDVLVNNAGNVRAGRLEATDVADIRAMIEVDLLAPILWTR 122 V D AA A G +D+LVN AG +R G + + + A V+ +R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 123 TALPLLRASGDGAIVNVASGIALVGAPFYATYAAAKAGLARFGEALHRELLDEGVRVLTV 182 + + G+IV V S A V A YA++KA F + L EL + +R V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 183 YPGATETPM 191 PG+TET M Sbjct: 186 SPGSTETDM 194
>PF03944#delta endotoxin Length = 633 Score = 26.9 bits (59), Expect = 0.014 Identities = 9/25 (36%), Positives = 17/25 (68%) Query: 32 LGFNEVTDILTTAWPPGGCRAALMA 56 L +NE+ +I + + PGG RA +++ Sbjct: 442 LHYNEIRNIASPSGTPGGARAYMVS 466
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.0 bits (218), Expect = 3e-23 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 7/134 (5%) Query: 2 PTVLIIDDDSATRAALETLLKKKRFCVFLAPDGPTGIRLIGSVSFDAVVIDMFMPGMDGI 61 T+L+ DDD+A R L L + + V + + T R I + D VV D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 ATIRELIKIDPTVPFIAISGYAFTDKKQGAPDFLGMAIKLGATAALQKPFDVLDLLEAVD 121 + + K P +P + +S A + GA L KPFD+ +L+ + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQ-------NTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 122 SAIEVRQRLLSQAR 135 A+ +R S+ Sbjct: 117 RALAEPKRRPSKLE 130
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.1 bits (182), Expect = 1e-18 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 6/137 (4%) Query: 2 TNILVVDDEVGVCCVIQHLLVREGYAVTAVTDGRQAMDVMARDDFAAALIDLNLADMDGN 61 ILV DD+ + V+ L R GY V ++ +A D + D+ + D + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 DVIRAARAARPNMPIVMMSGMVLESGHGPADVLDLSSRILGLHRLAKPFKPRDLSQLMRD 121 D++ + ARP++P+++M S +S L KPF +L ++ Sbjct: 64 DLLPRIKKARPDLPVLVM------SAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 122 ILATDTESLGRAVMARQ 138 LA + Q Sbjct: 118 ALAEPKRRPSKLEDDSQ 134
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 26.4 bits (58), Expect = 0.041 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 8/48 (16%) Query: 25 GTAVYGADGDRIGTIERVMIDKLSGRVSYAVLAFGGFLG-LGNDHYPL 71 GTAVYG D++G I+R+++ + FG +G +G+ + L Sbjct: 65 GTAVYGKLSDQLG-IKRLLL------FGIIINCFGSVIGFVGHSFFSL 105
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 24.8 bits (54), Expect = 0.039 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 15 AGERYVELPGDVEAMDSADVIARQLIMDHPELRHQDYAVLVTNEEGDEICRVPLDLL 71 G + D++ SA+++ +Q + +P + ++ E+ D + DLL Sbjct: 133 NGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTES---EQWDTVIEGNDDLL 186
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 91.7 bits (227), Expect = 1e-23 Identities = 66/255 (25%), Positives = 114/255 (44%), Gaps = 13/255 (5%) Query: 90 LAGRKALITGGDSGMGRAAAIAYAREGADVAINYYPTEEPDAQEVIALIKDEGRRGIAIP 149 + G+ A ITG G+G A A A +GA +A Y E+ ++V++ +K E R A P Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEK--LEKVVSSLKAEARHAEAFP 63 Query: 150 GDLRDERFCQQLVQQALEALGGLDIIVNNAGRQQARQSILDVSSEDFDATMKTNIYAPFW 209 D+RD ++ + +G +DI+VN AG + I +S E+++AT N F Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTGVFN 122 Query: 210 IIKAALPHLKP--GSAIIGTSSEQAYDPSPDLYDYAQTKAATMNYVKSLAKQLGPKGIRV 267 ++ ++ +I+ S A P + YA +KAA + + K L +L IR Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 268 NAVAPGPIWTPLQ----VSGGATMEKLQKFGGQ----TPLGRPGQPAELASIYVQLAAAD 319 N V+PG T +Q + ++ PL + +P+++A + L + Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 320 ASYANGQVYGAAGGS 334 A + GG+ Sbjct: 243 AGHITMHNLCVDGGA 257
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.9 bits (184), Expect = 2e-15 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Query: 1998 TVLLVDDDARNIFALSSVLERRGMKVLTATTGSEAIDLVQGNPEIAIVLMDIMMPQMDGY 2057 T+L+ DDDA L+ L R G V + + + +V+ D++MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDENAF 63 Query: 2058 QTIGVIRQSPIFARLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLLAIR 2112 + I++ LP++ ++A+ K E GA DYL KP + +L+ I Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Score = 67.5 bits (165), Expect = 2e-13 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 7/130 (5%) Query: 1729 TILLVVEDDPHYARVLIDLARDKGFKVLIASRGAEALELAKQYQPAAISLDVFLPDMLGW 1788 +LV +DD VL G+ V I S A + DV +PD + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 1789 TVLSQLK-HNPLTRHIPVQIITLD---EDRQHALARGAFSFVSKPTTTEGVSAALTQIKE 1844 +L ++K P +PV +++ A +GA+ ++ KP + + + Sbjct: 64 DLLPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 1845 YAKPRRKRLL 1854 K R +L Sbjct: 121 EPKRRPSKLE 130 Score = 67.5 bits (165), Expect = 3e-13 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Query: 1850 RKRLLIVEDNDAERMSIRQLLEHDDIEIVGADTGAAALDTLRSGPCDCVVLDLRLPDMSG 1909 +L+ +D+ A R + Q L ++ A + +G D VV D+ +PD + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 1910 FDVLEQLRTDETLAGVPVVVFTG 1932 FD+L +++ + +PV+V + Sbjct: 63 FDLLPRIK--KARPDLPVLVMSA 83
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 161 bits (410), Expect = 1e-53 Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 5/160 (3%) Query: 4 IALYPGSFDPVTNGHLDVVRQAVHLCDKLIVAVGVHHGKKPLFSTEERLAMAHEVFGPVA 63 A+YPGSFDP+T GHLD++ + L D++ VAV + K+P+FS +ERL + +A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKA---IA 58 Query: 64 SAAGCAFDASTYDNLTVTAAQQAGAILMIRGLRDGTDLDYEMQLAGMNQTMAPSIQTVFV 123 D+ ++ LTV A+Q A ++RGLR +D + E+Q+A N+T+A ++TVF+ Sbjct: 59 HLPNAQVDS--FEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFL 116 Query: 124 PASVPVRPITASLVRQIAAMGGEISHFVPPSVVAPLKAKF 163 S +++SLV+++A GG + HFVP V A L +F Sbjct: 117 TTSTEYSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQF 156
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 33.8 bits (77), Expect = 6e-04 Identities = 45/226 (19%), Positives = 61/226 (26%), Gaps = 38/226 (16%) Query: 22 AADLAARPYTKAPVMAPAPLP-TWAGLYLGLQGGGGWGRSDETFFGGPNAVGFAGTQRYD 80 A +A A V AP TW Y G GW + +T F N Sbjct: 5 AIAIAVALAGFATVAQAAPKDNTW---YTG--AKLGWSQYHDTGFINNNGPTHENQLGAG 59 Query: 81 INGGFAGGVIGYNWQVDNIVFGLEGDYHWADISGRSTEINLGAGDTYFTKLRGFGDIKGR 140 GG+ QV N G E Y W + GA +L K Sbjct: 60 AFGGY---------QV-NPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTA----KLG 105 Query: 141 LGWAAGPALFFVSGGAAVGDLQHRYDAGLFGPAFSASQSDWRWGWTIGAGAEYMFAQNWS 200 ++ GG G D G EY + Sbjct: 106 YPITDDLDIYTRLGGMVWRADTKSNVYG--------KNHDTGVSPVFAGGVEYAITPEIA 157 Query: 201 AKVEYNYL-DFGKSTLQYTPVAANRSEWNDTVHTVKVGVSYHFGGP 245 ++EY + + G A+ + +GVSY FG Sbjct: 158 TRLEYQWTNNIGD---------AHTIGTRPDNGMLSLGVSYRFGQG 194
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 31.0 bits (70), Expect = 0.004 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Query: 1 MRRLLLGATTSLALGLAPAIAADLPARTFTKAPG 34 MRRLL A L L + P A LP T PG Sbjct: 1 MRRLLSVAPVLLWL-ITPLAFAQLPGITSQPLPG 33
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 32.6 bits (74), Expect = 0.001 Identities = 52/263 (19%), Positives = 79/263 (30%), Gaps = 70/263 (26%) Query: 1 MQKTALITTASVALLGLAPASAADFATRPYGKAPPPAYVTPLPSWAGFYLGLNGGADWSR 60 M+KTA+ +A+ A+ A A P +Y G G Sbjct: 1 MKKTAIA----IAVALAGFATVAQAA----------------PKDNTWYTGAKLGWSQYH 40 Query: 61 NCWTLNNVGGVPVAPRQSEGCHNASSGLIGGQVGYRWQAASWVFGLEAQGNWT---DLKS 117 + +NN G H G G GY Q + G E +W K Sbjct: 41 DTGFINNNGP----------THENQLG-AGAFGGY--QVNPY-VGFEMGYDWLGRMPYKG 86 Query: 118 SNASTAALAAGITNTTKTDAIGLFTGQVGYAW-DNVLWYVKGGAAVAHNKYTGTANAAAP 176 S + A A G+ T ++GY D++ Y + G V Sbjct: 87 SVENGAYKAQGVQ----------LTAKLGYPITDDLDIYTRLGGMVWRADTKSNVY---- 132 Query: 177 VAVGTLLDSASETRWGGTVGTGVEYGFAPNWSVAVEYDHLFMGSRDISFPATANVNSRID 236 +T GVEY P + +EY + + +R Sbjct: 133 -------GKNHDTGVSPVFAGGVEYAITPEIATRLEYQWT------NNIGDAHTIGTR-- 177 Query: 237 TIKQDIDIATVRVNYRFGATGAT 259 D + ++ V+YRFG A Sbjct: 178 ---PDNGMLSLGVSYRFGQGEAA 197
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 39.5 bits (92), Expect = 6e-06 Identities = 55/246 (22%), Positives = 76/246 (30%), Gaps = 53/246 (21%) Query: 1 MKKLLVITTALVGIATATSASAADLAARPYTKAPPAIVAINDWSGFYLGINGGYGSSR-N 59 MKK I A+ AT A AA N W Y G G+ Sbjct: 1 MKKTA-IAIAVALAGFATVAQAAPKD--------------NTW---YTGAKLGWSQYHDT 42 Query: 60 CWTLVNGPAEGCHNATGGTVGGQFGYRWQMGQVVFGLEAQGNWADLTGNNVTPVFAPDRN 119 + NGP + G GG Y+ G E +W + + + Sbjct: 43 GFINNNGPTHE-NQLGAGAFGG---YQVNPY---VGFEMGYDWL----GRMPYKGSVENG 91 Query: 120 RTKLTAFGLFTGQIGYSFGDTL-LYAKGGAAVTDTRYEIFSGVINTVLAATTVHKWGAS- 177 K L T ++GY D L +Y + G V H G S Sbjct: 92 AYKAQGVQL-TAKLGYPITDDLDIYTRLGGMVWRADT--------KSNVYGKNHDTGVSP 142 Query: 178 -VGAGVEYAFAPSWSVGFEYDHLF-MGNTNVPFQGAVFAQTDRIKQDVDLFTARINYRFG 235 GVEYA P + EY +G+ A T + D + + ++YRFG Sbjct: 143 VFAGGVEYAITPEIATRLEYQWTNNIGD----------AHTIGTRPDNGMLSLGVSYRFG 192 Query: 236 GPVVAK 241 A Sbjct: 193 QGEAAP 198
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 67.7 bits (165), Expect = 9e-17 Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 12/165 (7%) Query: 1 MFDIGWSELLVIGVVALIAIGPKELPGVLRMVGQWMGKARRMASEFQGQFQEAMREAEMA 60 MFDIG+SELL++ ++ L+ +GP+ LP ++ V W+ R +A+ Q + + ++ E Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ 60 Query: 61 DLKKSFDEVKEAASGFSPAGMMSSLQRDVDKALDIEGVDKPAEPVIATSPEPVASVETPV 120 D K E AS + + + ++ +A + A S E ++ PV Sbjct: 61 DSLKKV----EKASLTNLTPELKASMDELRQAAESMKRSYVANDPEKASDEA-HTIHNPV 115 Query: 121 TPTTPEPPHAETFVEAEAHQAVGEPLAIVREIKPEPQPQPADGAA 165 T A+ + E KPE P+P A Sbjct: 116 VKDNEAAHEGVTPAAAQTQASSPEQ-------KPETTPEPVVKPA 153
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 25.1 bits (54), Expect = 0.049 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 15 KAATFVLQTRSNTVSHATPASPGDRDVARAHDVVRKPELRKTECRSAIEQPNDASGKGL 73 AAT L N + PA PG A+A V + TE + A+++ DA+ K Sbjct: 158 DAATKKLTQAQNKLQSLDPADPG---YAQAEAAVEQAGKEATEAKEALDKATDATVKAG 213
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 24.0 bits (52), Expect = 0.049 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%) Query: 2 KNQWVDLLISWLPFLILIAIWFAFSKRMNVTKMSTQLHD 40 LL + + +I+ IW F + + + +HD Sbjct: 153 WTAVWSLLAATV--VIMFYIWVRFEWQFALGAVVALVHD 189
>PF02370#M protein repeat Length = 168 Score = 35.9 bits (82), Expect = 3e-04 Identities = 25/123 (20%), Positives = 56/123 (45%) Query: 215 QVEKRIRSRVKRQMEKTQREYYLNEQMKAIQKELGDEDGRDELADLEERINKTKLSKEAR 274 + + + R+ + + +RE ++++ ++KE ++ R E + ER ++ K +E + Sbjct: 45 ENDPQYRALMGENQDLRKREGQYQDKIEELEKERKEKQERPERREKFERQHQDKHYQEQQ 104 Query: 275 EKAQHELKKLRQMSPMSAEATVVRNYLDWLLSIPWNKKSKVKKDLEAAQAVLDADHYGLE 334 +K Q E ++L A+ + + L+ KK+LE L +H L+ Sbjct: 105 KKHQQEQQQLEAEKQKLAKEKQISDASRQGLNRDLEASRAAKKELEPKHQKLGTEHQKLK 164 Query: 335 KVK 337 + K Sbjct: 165 EEK 167
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 30.0 bits (67), Expect = 0.017 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 162 KAEGAKAASGDRVKVNFKGT-IDGVAFDGGTGEGIDVVIGSNTFIPGFEDQLVGIAVGET 220 GAK D V V + GT IDG FD G + IPG+ + L + G T Sbjct: 135 AGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAGST 194
>PF05272#Virulence-associated E family protein Length = 892 Score = 25.4 bits (55), Expect = 0.015 Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 7/52 (13%) Query: 5 FTPREVIARSYP------SWDFAMSDRLIAWLDHCGYEIVKKRQELAAKAVT 50 + V R++P + A RL +++ Y + + +A+ Sbjct: 474 LREQPVAVRAFPWRKAPGPLEDADVLRLADYVE-TTYGTGEASAQTTEQAIN 524
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 43.1 bits (101), Expect = 4e-07 Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 14/166 (8%) Query: 3 LKDKTIVVTGGSRGLGLGIVEALADHGAKVTVVARGTEALGAVAARLGVA-----TIAAD 57 ++ K +TG ++G+G + LA GA + V E L V + L AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 58 VTDEAAARRIVGDI-----RPDILILNAGTTPQMDRLDRLSWKDFSVAWETDVKAGLYWI 112 V D AA I I DIL+ AG + + LS +++ + + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 113 QAALK--LPLKPGSRVLVGSSGAAVGGSQMSGGYAGAKRMLWFMTK 156 ++ K + + GS V VGS+ A V + M YA +K TK Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSM-AAYASSKAAAVMFTK 169
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 25.9 bits (57), Expect = 0.036 Identities = 12/65 (18%), Positives = 28/65 (43%) Query: 30 IILASKIVIAGGAVLLLGAVLGLLGSDAVALLGAIAAVLGGIVSLGSNVSTLRQTTAAMA 89 +L K + G LL A+ LG A+ ++ +++++G + +G + + + Sbjct: 203 KLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRNHHQSKPIP 262 Query: 90 AAEAL 94 L Sbjct: 263 FGPYL 267
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 263 bits (674), Expect = 6e-83 Identities = 118/363 (32%), Positives = 172/363 (47%), Gaps = 41/363 (11%) Query: 313 AAGMRGRDAAPPRSAQAPPPARSAGNKTPRFVAEDPNVLAIVRRVEGAAARKMPILIRGE 372 G+ GR A P+ + V + I R + + ++I GE Sbjct: 111 LIGIIGRALAEPKRRPSKLED--DSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGE 168 Query: 373 TGTGKEQLARHAHAASGRA-GAFIAVNCAALPDSLIEAELFGYADGAFTGARSGGAMGLV 431 +GTGKE +AR H R G F+A+N AA+P LIE+ELFG+ GAFTGA++ G Sbjct: 169 SGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRS-TGRF 227 Query: 432 KEADGGTLFLDEIGDMPVALQGVLLRLLDDWTVRPVGGAA-FKVDVFLVSATNAALDKAI 490 ++A+GGTLFLDEIGDMP+ Q LLR+L VGG + DV +V+ATN L ++I Sbjct: 228 EQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSI 287 Query: 491 AEGRFRSDLLYRLNTLEVRLPRLRERS-DFDAIARQLLHKID----PGCAITAEALARLA 545 +G FR DL YRLN + +RLP LR+R+ D + R + + + EAL + Sbjct: 288 NQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMK 347 Query: 546 PNHWHGNIRELGNMLARLTLGVSNGIIDEACVDAMLGQTIGQLIARPSLDTEGS------ 599 + W GN+REL N++ RLT +I ++ L I + GS Sbjct: 348 AHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQA 407 Query: 600 -------------------------LHDVQRARILMVYAETNGNVSETARRLGVSRNTIY 634 L +++ IL T GN + A LG++RNT+ Sbjct: 408 VEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLR 467 Query: 635 RAL 637 + + Sbjct: 468 KKI 470
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 970 bits (2509), Expect = 0.0 Identities = 423/1042 (40%), Positives = 632/1042 (60%), Gaps = 15/1042 (1%) Query: 4 SHYFVDRPIFAAVLSIILTIAGAITLTRLPVSEYPEIAPPTVSITASYPGASAQVISETV 63 +++F+ RPIFA VL+IIL +AGA+ + +LPV++YP IAPP VS++A+YPGA AQ + +TV Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 ATPIEQEVNGVDDMLYIGSQATGDGRLTINVVFKPGTDIDTAQVLVQNRVAVATPRLPED 123 IEQ +NG+D+++Y+ S + G +TI + F+ GTD D AQV VQN++ +ATP LP++ Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 124 VTRLGITVKKASPDLMMVVHLVSPDGTRNQQYISNYATLYIKDLLARVDGVGNINIFGAR 183 V + GI+V+K+S +MV VS + Q IS+Y +KD L+R++GVG++ +FGA+ Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ 181 Query: 184 DYAMRIWVDPDRAAARGLTAGDVTAAVRAANLQVAAGALNQPPARSDGAYEVAVETLGRL 243 YAMRIW+D D LT DV ++ N Q+AAG L PA ++ R Sbjct: 182 -YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 244 TSPEQFEDIVLRADPDGGYLRLRDVARVELGAQDYSVNAYLNGDAATAIVVYQRPGSNAL 303 +PE+F + LR + DG +RL+DVARVELG ++Y+V A +NG A + + G+NAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 304 STAKAVFAAMEIAKRDFPSGLDYKVVYNPTEFIRKSVDEVVQTLFEAVALVVIVILVFLQ 363 TAKA+ A + + FP G+ Y+ T F++ S+ EVV+TLFEA+ LV +V+ +FLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 364 SWRAAIIPVVAIPVSLVGCFLVMGAVGLTFNNLSLFGLVLAIGIVVDDAIVVVENIERYI 423 + RA +IP +A+PV L+G F ++ A G + N L++FG+VLAIG++VDDAIVVVEN+ER + Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 424 AE-GLDPREASHRTMDEVGGALLAIALVLCAVFVPTAFILGLQGAFYRQFAITIAAATLI 482 E L P+EA+ ++M ++ GAL+ IA+VL AVF+P AF G GA YRQF+ITI +A + Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 483 SCFVSLTLSPALGAILLKSGHEPAGRFARLERPFTAVANAFNRGFDAIARGFGSLTARLV 542 S V+L L+PAL A LLK FN FD + + +++ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKG------GFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 543 RVAAVMLLCYAVLVGFAYRLLTVTPTGLIPQLDRGYLIAAIQLPPGSSLARTDAVVKAAI 602 LL YA++V L P+ +P+ D+G + IQLP G++ RT V+ Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 603 EIALK--RPGVANAVAFAGFDGATFTNAPNAGVIFITLKPFEERVRAALPAIAVAADLRK 660 + LK + V + GF + A NAG+ F++LKP+EER A AV + Sbjct: 595 DYYLKNEKANVESVFTVNGFSFS--GQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKM 652 Query: 661 QLASVNQAFALVIEPPSVPGIGTGGGLKGYVQDRAGRGLPALEATAWQVAGAARQSPGIV 720 +L + F + P++ +GT G + D+AG G AL Q+ G A Q P + Sbjct: 653 ELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 721 QAYTL-FNNRTPQVFADIDRTKAELMGVPIGRVFEALSVYLGSSYINDFNILGRTYKVTA 779 + T Q ++D+ KA+ +GV + + + +S LG +Y+NDF GR K+ Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYV 772 Query: 780 QADNEFRIDTTDVGSLRMRNSDGDMVPIGSVARFKDASGPYRVPRYNLYPAAEVNLQLAK 839 QAD +FR+ DV L +R+++G+MVP + G R+ RYN P+ E+ + A Sbjct: 773 QADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAP 832 Query: 840 GYSTGQAIATLEAINAKALSQGFGFEWTEIALQEKLSGNTAAVAFGLAVVFVFLLLAALY 899 G S+G A+A +E + +K L G G++WT ++ QE+LSGN A ++ V VFL LAALY Sbjct: 833 GTSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALY 891 Query: 900 ENWLLPLAVVLIVPMCILAAMIGIDLRSLDRNILVEIGLIVLVGLAAKNAILIVEFAKQA 959 E+W +P++V+L+VP+ I+ ++ L + ++ +GL+ +GL+AKNAILIVEFAK Sbjct: 892 ESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDL 951 Query: 960 EEQGAKTI-DAVSTAARLRLRPIVMTSFAFILGVLPLAIATGAGAEMRQSLGTAVFFGMI 1018 E+ K + +A A R+RLRPI+MTS AFILGVLPLAI+ GAG+ + ++G V GM+ Sbjct: 952 MEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMV 1011 Query: 1019 GVTLFGLLFTPTFYVVVRRIEK 1040 TL + F P F+VV+RR K Sbjct: 1012 SATLLAIFFVPVFFVVIRRCFK 1033
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.4 bits (118), Expect = 1e-08 Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 10/109 (9%) Query: 64 EVRPRVSGFLTSIAFKDGELVRAGELLFTIDPRPYEISVESAQAEIAKAKAQVAQAATDV 123 E++P + + I K+GE VR G++L + A+A+ K ++ + QA + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL-------GAEADTLKTQSSLLQARLEQ 150 Query: 124 SRAQQLIGSQAITQR---DVDARKATLDVAEGQLLAAQASLRAAQLNLE 169 +R Q L S + + + +V+E ++L + ++ + Sbjct: 151 TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Score = 36.0 bits (83), Expect = 2e-04 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 8/92 (8%) Query: 98 YEISVESAQAEIAKAKAQVAQAATDVSRAQQLIGSQAITQRDVDARKATLDV---AEGQL 154 E A E+ K+Q+ Q +++ A++ + LD + Sbjct: 257 QENKYVEAVNELRVYKSQLEQIESEILSAKE-----EYQLVTQLFKNEILDKLRQTTDNI 311 Query: 155 LAAQASLRAAQLNLEWTRVTAPISGRISDRKV 186 L + + + + AP+S ++ KV Sbjct: 312 GLLTLELAKNEERQQASVIRAPVSVKVQQLKV 343
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 148 bits (375), Expect = 3e-49 Identities = 74/137 (54%), Positives = 93/137 (67%), Gaps = 8/137 (5%) Query: 1 MLKEFREFAMKGNVVDLAVGVIIGGAFGAIVTSLVGDIIMPIIGAITGGLDFSNYFIPLA 60 ++KEFREFAM+GNVVDLAVGVIIG AFG IV+SLV DIIMP +G + GG+DF + + L Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLR 62 Query: 61 KSVTATNLADAKKQGAVLAYGSFLTLTLNFFIVAFVLFMVIRGMNKLKRRQEAAPAAPPK 120 A V+ YG F+ +F IVAF +FM I+ +NKL R++E PAA P Sbjct: 63 -------DAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKE-EPAAAPA 114 Query: 121 PSAEVELLTEIRDLLKK 137 P+ E LLTEIRDLLK+ Sbjct: 115 PTKEEVLLTEIRDLLKE 131
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 28.3 bits (63), Expect = 0.035 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 11/65 (16%) Query: 68 IAEAKGRVPVVAGAGSNSTKEAV-----ELAQHAEKAGADAVLVVTP------YYNKPTQ 116 IA G VPV+ G EAV + AE+ AD +++T YY + Sbjct: 190 IASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKE 249 Query: 117 EGLYQ 121 + L + Sbjct: 250 QWLRE 254
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 29.8 bits (67), Expect = 0.048 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Query: 602 PFDHYAYPVNGIPAFRSIGPEVEQSVIFSIARQESAFNQAVVSPAQAYGL 651 P + A + GI A I P+V +F ++AF+Q + A Y + Sbjct: 120 PLHNPAN-IEGIKACTQIMPDVPMVAVF-----DTAFHQTMPDYAYLYPI 163
>PF03627#PapG Length = 336 Score = 29.9 bits (67), Expect = 0.021 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 4/75 (5%) Query: 354 FPQQFVMFSGTGVAGAYQSVGFAGISDGVFGAGGSIETTKSWGFRGGYTHNWNPNWATAI 413 FP +G + A+ ++ F + + GG++ T+ R + +W P AT Sbjct: 5 FPALLFSLCVSGESSAWNNIVFYSLGNVNSYQGGNVVITQ----RPQFITSWRPGIATVT 60 Query: 414 YGGYAGLSYTSNAKA 428 + G + + A Sbjct: 61 WNQCNGPGFADGSWA 75
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 32.8 bits (75), Expect = 0.002 Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 26/184 (14%) Query: 12 LVLGLTGAIGGAIAASLARRGFAIRAL--------TRRPAADRPSLAFP-VDWRDGDARD 62 LV G G IG ++ L G + + A LA P + D D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63 Query: 63 AASVRA--AAEGASLIVH-----GV-----NPPGYARWREEALPMLANTIAAAKAVG-AT 109 + A+ + V NP YA + L N + + Sbjct: 64 REGMTDLFASGHFERVFISPHRLAVRYSLENPHAYA---DSNLTGFLNILEGCRHNKIQH 120 Query: 110 ILFPGNVYVYSSASPAVVSESTP-RRPTTRKGRVRLEMEEMLEQAARDHGVRVIALRAGD 168 +L+ + VY S P + + E M + +G+ LR Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFT 180 Query: 169 FFGP 172 +GP Sbjct: 181 VYGP 184
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.034 Identities = 9/17 (52%), Positives = 9/17 (52%) Query: 38 GPNGAGKSTFFNILSGT 54 G G GKST N L G Sbjct: 603 GTGGIGKSTLINTLVGL 619
>FIMBRILLIN#Porphyromonas gingivalis: fimbrillin protein signature. Length = 348 Score = 30.0 bits (67), Expect = 0.009 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 12/49 (24%) Query: 69 LRPS-------LTFHDGTPLTSEDVVATFKAIL-----DPITASPARTN 105 LRP+ LT HDGTPL+SE++ A F A +P T P N Sbjct: 234 LRPTILCVKGKLTKHDGTPLSSEEMTAAFNAGWIVADNNPTTYYPVLVN 282
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 448 bits (1154), Expect = e-155 Identities = 192/541 (35%), Positives = 280/541 (51%), Gaps = 16/541 (2%) Query: 6 IRGRAASEGLAMGPAV------IRRALEGASRAKGSIAEEHAALAAAVARARDAVAELIA 59 I G AAS G+A+ A + + I + AAL + R + A Sbjct: 5 ITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEA 64 Query: 60 SLQGDAAELIGFQLALLEDDALTEAAFAQI-ERGTAAEDAWRAAMAQEIAGYESADDEYF 118 S+ D AE+ L +L+D L + +I AE A + ++ +ES D+EY Sbjct: 65 SMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEYM 124 Query: 119 RARASDLADIRDRVVRHLFG--LADDGQLPSGAIIVARDLAPSAFLGVDWSKGGGIALGE 176 + RA+D+ D+ RV+ HL G + +I+A DL PS ++ G A Sbjct: 125 KERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDI 184 Query: 177 GSPTSHVAMLARGRGVPMVVGLGRGWERLA-GE-LLVDGTRAEVVVDPDPERIAAARREI 234 G TSH A+++R +P VVG E++ G+ ++VDG V+V+P E + A + Sbjct: 185 GGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKR 244 Query: 235 DEFRRRKAEAIARQHEPALTRDGTPVAVLVNISGPNDMAIAPASAGDGVGLARTEFLTAN 294 F ++K E EP+ T+DG V + NI P D+ A+ G+G+GL RTEFL + Sbjct: 245 AAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMD 304 Query: 295 L--LHDEEAQYRAYAELMRWADGRPVTIRTLDAGGDKPIPGYTIDGESNPFLGLRGIRLS 352 L EE Q+ AY E+++ DG+PV IRTLD GGDK + + E NPFLG R IRL Sbjct: 305 RDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAIRLC 364 Query: 353 LRHPEIFRVQLRALSRAAALGPLKVMLPMVTNAGELDAARGHLRAVLDDLAKDSLAFAEP 412 L +IFR QLRAL RA+ G LKVM PM+ EL A+ ++ D L + + ++ Sbjct: 365 LEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDS 424 Query: 413 -AFGIMIEVPAAALAAQDFA--ADFFSIGTNDLTQYATAASRDGAEVADYADVLHPGVLA 469 GIM+E+P+ A+AA FA DFFSIGTNDL QY AA R V+ HP +L Sbjct: 425 IEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAILR 484 Query: 470 MIAHVVRAARARGVDVSICGDAAGDVSAIPALLRAGVRALSVSPGLLPQVKAAIRELDLA 529 ++ V++AA + G V +CG+ AGD AIP LL G+ S+S + ++ + +L Sbjct: 485 LVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKE 544 Query: 530 R 530 Sbjct: 545 E 545
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 30.0 bits (67), Expect = 0.017 Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 9/45 (20%) Query: 461 AAVPSTPREPAQPRSVPAQQRTSYDRGLPISPQPEPPPPPPPSAP 505 P + QP P P+PEP P PP AP Sbjct: 51 TPADLEPPQAVQPPPEPVV---------EPEPEPEPIPEPPKEAP 86
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 46.6 bits (110), Expect = 5e-07 Identities = 41/281 (14%), Positives = 85/281 (30%), Gaps = 22/281 (7%) Query: 394 RIANDEETRRREIERTRAIEQAEIAAREAT-------EKARIAQTMIVNLERISSDERTR 446 + N E +R + T I + E AR+ + + + E T Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 447 ATEIAQVRAIQEAEIEAQKAVEAARIAREQVLSAERIAAEHATRKLEIERNQGIEIAGIA 506 + + E Q A E RE V + + T+ E+ + G E Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNRE-VAKEAKSNVKANTQTNEVAQ-SGSETKETQ 1096 Query: 507 AREATDASRIAQEERVRTLEIARVRSIEEADIASREAIEAARIAQEQAVAAKRILSEQET 566 E + + + +EE+ A+V + + ++ + + + Q + V + + + Sbjct: 1097 TTETKETATVEKEEK------AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND 1150 Query: 567 RSLEIARTEAVEAADLKRREAVERRRIEVELALEAERIASSRTREVLNIDQKKAIELADE 626 ++ I ++ + + VE + ++ V N + Sbjct: 1151 PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT-TQP 1209 Query: 627 TRVIELAAKRAERIDADRQVKEAEIVARKQVETADVSREQA 667 T E + K R + VE A S Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPH------NVEPATTSSNDR 1244 Score = 46.2 bits (109), Expect = 8e-07 Identities = 53/330 (16%), Positives = 120/330 (36%), Gaps = 37/330 (11%) Query: 195 PSNRFDAEGLTRLMEDIESKRKLRNDIEQDSMIKIRTRNLEAEREALEIERESETARLEQ 254 P+ +E + E+ + + K EQD+ A+ ++ ++T Sbjct: 1028 PAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTN---- 1083 Query: 255 ERDIEMRRALQRTEVARERALRETEAEQAQISAREAIEKARIANELTIAEARIAAERDTR 314 E+ ++ T+ + +ET + + EKA++ E T ++ ++ + Sbjct: 1084 ----EVAQSGSETKETQTTETKETATVEKE-------EKAKVETEKTQEVPKVTSQVSPK 1132 Query: 315 QR--EIERTRAVEERELLAREDIEKARIANQR--AIDAARIESEREVRQRDIERTRTIEE 370 Q E + +A RE +I++ + + E+ V Q E T Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG 1192 Query: 371 AEIAAREAVEKARIQQDRVVSDARIANDEETRRREIERTRAIEQAEIAAREATEKARIAQ 430 + Q V S++ +N + R R R+ E A + +++ +A Sbjct: 1193 NSVVENPENTTPATTQPTVNSES--SNKPKNRHRRSVRSVP-HNVEPATTSSNDRSTVAL 1249 Query: 431 TMIVNLERIS--SDERTRATEIA--------QVRAIQEAEIEAQKAVEAARIAREQVLSA 480 + + + SD R +A +A Q + E E Q V + + + S+ Sbjct: 1250 CDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSS 1309 Query: 481 E---RIAAEHATRKLEIER--NQGIEIAGI 505 R +++ +L ++ + +++ G+ Sbjct: 1310 SQYRRFSSKSTQTQLGWDQTISNNVQLGGV 1339
>cloacin#Cloacin signature. Length = 551 Score = 34.3 bits (78), Expect = 7e-05 Identities = 29/93 (31%), Positives = 37/93 (39%) Query: 26 GGGGGAGGGAGGGAGGGAGAGAGVGGAGAGAGGGMGGGSMGAGSGSAGGASGTTGAGTGA 85 GG G G G G G G + G G+G+G GGGS G G + G +G G Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Query: 86 SGTAGTTSGGGSGASTGSGSSSSNSYGGGSPST 118 S A + G ST + S G+ S Sbjct: 82 SAVAAPVAFGFPALSTPGAGGLAVSISAGALSA 114 Score = 32.4 bits (73), Expect = 4e-04 Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 4/82 (4%) Query: 33 GGAGGGAGGGAGAGAGVGGAGAGAGGGMGGGSMGAGSGSA----GGASGTTGAGTGASGT 88 GG G G GA + +G G G GG S G+G S GG SG+ G SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 89 AGTTSGGGSGASTGSGSSSSNS 110 G SG +G+G + S Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAV 84 Score = 31.2 bits (70), Expect = 8e-04 Identities = 24/92 (26%), Positives = 32/92 (34%) Query: 26 GGGGGAGGGAGGGAGGGAGAGAGVGGAGAGAGGGMGGGSMGAGSGSAGGASGTTGAGTGA 85 GG G G G G G GA G G S G G+ G G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 86 SGTAGTTSGGGSGASTGSGSSSSNSYGGGSPS 117 G + GG + G+ S+ + G P+ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPA 94 Score = 30.5 bits (68), Expect = 0.002 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 5/94 (5%) Query: 20 GAALAQGGGGGAGGGAGGGA-----GGGAGAGAGVGGAGAGAGGGMGGGSMGAGSGSAGG 74 G G GGGA G+G + GGG+G+G GG GG G S G Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Query: 75 ASGTTGAGTGASGTAGTTSGGGSGASTGSGSSSS 108 ++ G + +GG + + + S++ Sbjct: 82 SAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 73.2 bits (179), Expect = 1e-16 Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 1/190 (0%) Query: 211 RDLRGKRVVITGASSGIGRATALALAREGASLVLAARRENVLKDVAAECETLGGQAIAVG 270 + + GK ITGA+ GIG A A LA +GA + L+ V + + A A Sbjct: 4 KGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 271 TDVTDADAVRRLAEQAVQSFGGIDVWINNAGTGVFGAYQDADLALHRKTIEVNLLGTMNG 330 DV D+ A+ + + + G ID+ +N AG G T VN G N Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 331 AYAALPVFLRQRRGTLINNISLGGWAPTPFAAAYTASKFGLRGFSASLRQELAAHQDIHV 390 + + + +R G+++ S P AAY +SK F+ L ELA + +I Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY-NIRC 182 Query: 391 CSVFPAMVDT 400 V P +T Sbjct: 183 NIVSPGSTET 192
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 110 bits (276), Expect = 9e-28 Identities = 118/587 (20%), Positives = 220/587 (37%), Gaps = 69/587 (11%) Query: 9 VAFTGISTTELQISVASSNISNADTKGYT-----QKTANQVADVTGGIGTGVSITGISSN 63 A +G++ + ++ AS+NIS+ + GYT AN G +G GV ++G+ Sbjct: 6 NAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGVQRE 65 Query: 64 VDKLLLKSLIGANSDLGAADTTNSYLTQLQQLFGSASTSGTSTTGTSLANSLASLESALS 123 D + L A + ++++ + ++++S LA + ++L Sbjct: 66 YDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSS--------LATQMQDFFTSLQ 117 Query: 124 SLASSPSSVSLQSAAVSALDDFASQLRSTSSSVQTLRGNADKDIASSVQSVNDDLKQISD 183 +L S+ + + A + + +Q ++T ++ + I +SV +N+ KQI+ Sbjct: 118 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIAS 177 Query: 184 LNVEIRKMAA--SGQSTADLEDERNSALQDLSSYMNVSYYTASNGDLQVYTSSGRALVD- 240 LN +I ++ +G S +L D+R+ + +L+ + V G + ++G +LV Sbjct: 178 LNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 237 Query: 241 SSAHTLSYTTSANISASSSFSGIMVDGVDVSSQIT-----SGKIGSLITLRDDTLPAVQT 295 S+A L+ S+ + ++ + VDG + +I +G +G ++T R L + Sbjct: 238 STARQLAAVPSSADPSRTTVA--YVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRN 295 Query: 296 QLDQLASQLRSALNGITEGA----SAVPPPTTLTGTASVSSATGLSASGTVRIAAVDQSG 351 L QLA A N + G +V T + D S Sbjct: 296 TLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASA 355 Query: 352 NLTASYDFDLSGYSTVGDLVADINAKNIGVTASIDSSGDLALTATATGNGVAVNDMTSSF 411 L Y +A VT + AVND S Sbjct: 356 VLATDYKISFDNNQWQVTRLASNTTFT--VTPDANGKVAFDGLELTFTGTPAVND--SFT 411 Query: 412 GGPDFSGYFGINDLVTGSSAADFAVNNSILSGSAGLPTGTLDSS---ATLTSGSQVLTAG 468 P ++ L+T + + ++ ++ G D+ A L S T G Sbjct: 412 LKPVSDAIVNMDVLIT---------DEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVG 462 Query: 469 SATVINALYDKLTGSTSFKAAGGLSATTGSFADYAAAIVANVASKASQASSNYTAKSTAQ 528 A N Y L K AT + + +V ++++ Sbjct: 463 GAKSFNDAYASLVSDIGNKT-----ATLKTSSATQGNVVTQLSNQQ-------------- 503 Query: 529 SSYASSLSSQSGVNIDEETARLSSLQNKYAAASQLISVVNSMFSSLL 575 S SGVN+DEE L Q Y A +Q++ N++F +L+ Sbjct: 504 -------QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALI 543
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 37.2 bits (86), Expect = 1e-04 Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 348 TATSGNATLQASGENGAGTIYGSELESSTTDTTGQFSNMISAQQAYSAASQVVSAVNKMY 407 T+ T A+ N + + S + ++ N+ QQ Y A +QV+ N ++ Sbjct: 480 NKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIF 539 Query: 408 DTLIS 412 D LI+ Sbjct: 540 DALIN 544 Score = 30.3 bits (68), Expect = 0.016 Identities = 13/34 (38%), Positives = 22/34 (64%) Query: 4 SGALSSAISALNAQSSSLAMISDNISNADTTGYK 37 S +++A+S LNA ++L S+NIS+ + GY Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYT 34
>FLAGELLIN#Flagellin signature. Length = 507 Score = 85.9 bits (212), Expect = 4e-21 Identities = 76/271 (28%), Positives = 128/271 (47%), Gaps = 13/271 (4%) Query: 4 ISTNVAANSAVRYLNINSSQETSSLSKLSSGSRITSASDDAAGLAISTRISSDITTLQQA 63 I+TN + LN + S +S++ +LSSG RI SA DDAAG AI+ R +S+I L QA Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 ATNASQATSILQTADGGASNISDILARMKSLASESASGTTVDSSSRSYIQSEFSQLISEI 123 + NA+ SI QT +G + I++ L R++ L+ ++ +GT D S IQ E Q + EI Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSD-SDLKSIQDEIQQRLEEI 122 Query: 124 DSIASGTRYSGTSLLDGTSSFSTGVNVLVGSNSTDVIQIKLSSLTSTALGVSTLDVSTQT 183 D +++ T+++G +L + + VG+N + I I L + +LG+ +V+ Sbjct: 123 DRVSNQTQFNGVKVLSQD----NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPK 178 Query: 184 GAS--------TALTTLDTAISNVSAARADIGAQESRFNFSADSISTQTQNLQSANSAIK 235 A+ +T DT + R D+ + + +A ++ + + Sbjct: 179 EATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTT 238 Query: 236 DVDIASEQAKLSSAQVKTQAAVSAEAAANQI 266 D + L T A+A A I Sbjct: 239 DDAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269 Score = 58.1 bits (140), Expect = 9e-12 Identities = 53/270 (19%), Positives = 105/270 (38%), Gaps = 4/270 (1%) Query: 5 STNVAANSAVRYLNINSSQETSSLSKLSSGSRITSASDDAAGLAISTRISSDITTLQQAA 64 + N A + + + + + D G+ + + + + Sbjct: 241 AENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVS 300 Query: 65 TNASQATSILQTADGGASNISDILARMKSLASESASGTTVDSSSRSYIQSEFSQLISEID 124 T + L AD A + A ++S + S + ++E ++L Sbjct: 301 TTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKL----S 356 Query: 125 SIASGTRYSGTSLLDGTSSFSTGVNVLVGSNSTDVIQIKLSSLTSTALGVSTLDVSTQTG 184 + + G S + + T + + + ++ + + Sbjct: 357 DLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKS 416 Query: 185 ASTALTTLDTAISNVSAARADIGAQESRFNFSADSISTQTQNLQSANSAIKDVDIASEQA 244 + L ++D+A+S V A R+ +GA ++RF+ + ++ NL SA S I+D D A+E + Sbjct: 417 TANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVS 476 Query: 245 KLSSAQVKTQAAVSAEAAANQIPQYLLKLL 274 +S AQ+ QA S A ANQ+PQ +L LL Sbjct: 477 NMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.8 bits (64), Expect = 0.006 Identities = 6/27 (22%), Positives = 11/27 (40%) Query: 30 AANGAAAGGAVAGPVGAMVGGTVGAAV 56 A AA G + + ++ V A+ Sbjct: 292 IAQRAAQGLSTSAAAAGLIASAVTLAI 318 Score = 28.0 bits (62), Expect = 0.013 Identities = 11/33 (33%), Positives = 14/33 (42%) Query: 25 TTVEGAANGAAAGGAVAGPVGAMVGGTVGAAVG 57 +V + AA V PV A+VG G G Sbjct: 376 ASVSSGISAAATTSLVGAPVSALVGAVTGIISG 408
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 8e-04 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 4/84 (4%) Query: 134 EKKRAKKKAEAR--AERAKQKAKDERKAAKKAKKK--AKKTSDKLPKETVKSKQRVKAKT 189 E+ + A+ R A+ AK K + + A+ K+T KET ++ KAK Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 190 STRAKAESRRPAAGKRVKTKSSPA 213 T E + + K + S Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSET 1138
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 318 bits (816), Expect = e-109 Identities = 102/344 (29%), Positives = 176/344 (51%), Gaps = 5/344 (1%) Query: 7 TEDKTEDPTQKRLDQALERGDVVKSQELNTWFVIAAATLVMTTFSGSIGTAVLVPMRNLI 66 + +KTE PT K++ A ++G V KS+E+ + +I A M + + Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVA-LSAMLMGLSDYYFEHFSKLMLIP 60 Query: 67 ANSWMIHTDGAGLLALARSLSFAVIAAIGVPIL-MVMLAAIAGNMMQHRLVWSGEPLKPS 125 A + A + L + P+L + L AIA +++Q+ + SGE +KP Sbjct: 61 AEQSYLPFSQALSYVVDNVLLEFFY--LCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118 Query: 126 LSKISPLSGAKRLFGKQAAANFAKGLFKLVLLGTVMVMILWPERLRLEALLHMDVAELLG 185 + KI+P+ GAKR+F ++ F K + K+VLL ++ +I+ + L L + + Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178 Query: 186 VTMSLTTHLMGSVVALLALVAIGDYLFQYRQWYERQKMSLQEMKEEFKQSEGDPHVKGRI 245 + + LM +++I DY F+Y Q+ + KMS E+K E+K+ EG P +K + Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238 Query: 246 RQIRQQRMKKRMMAAVPKASVIITNPTHYSVALSYERG-MQAPVCVAKGVDNIAFKIREI 304 RQ Q+ + M V ++SV++ NPTH ++ + Y+RG P+ K D +R+I Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298 Query: 305 AKAHDIPIVENVPLARALYATVEIDEEIPVEHYHAVAEIIGYVM 348 A+ +PI++ +PLARALY +D IP E A AE++ ++ Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE 342
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 124 bits (312), Expect = 1e-36 Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 2/239 (0%) Query: 11 LAAVFMLAFARIAAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLNRQAYQVDLQALSP 70 ++ R+ A++ P L E ++P R+KL A+++T + P Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF-- 69 Query: 71 LVVMMVHEIVIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQGQQGVLIGNFL 130 + + V +I+IGI LG T + +A++ AG +I QMGL F T VDP ++ + Sbjct: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 Query: 131 TMLGVTLLFATDSHHLVIAALSDSYKIFAPGELVPSGDVASLATKAFAAAFKIGLQLSAP 190 ML + L + H +I+ L D++ G + + TKA + F GL L+ P Sbjct: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189 Query: 191 FLVFGLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFALVLTAMMGTFLGYFEGVL 249 + L N+ LG+L R+ PQ+ ++ +G PL++ +G + A ++ + F + Sbjct: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 59.4 bits (144), Expect = 1e-15 Identities = 21/76 (27%), Positives = 44/76 (57%) Query: 5 ETLDVARDAIWTIVIVSSPLMVVGLVVGVVVSLFQALTQIQEQTLVFVPKIIAIFVTLLL 64 + + A++ ++I+S +V ++G++V LFQ +TQ+QEQTL F K++ + + L L Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62 Query: 65 GLPFMADALHQHMMRI 80 + + L + ++ Sbjct: 63 LSGWYGEVLLSYGRQV 78
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 47.3 bits (112), Expect = 3e-10 Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 43 ADKGGPSFSALLKDAIGSVVETGRKSDSQAVAMASGKA--NVMDVVTAVAETDVAVSTLV 100 + SF+ L A+ + +T + +QA G+ + DV+T + + V++ + Sbjct: 26 LPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGI 85 Query: 101 SVRDRVIQAYEDVMKMTI 118 VR++++ AY++VM M + Sbjct: 86 QVRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.5 bits (66), Expect = 0.004 Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 101 NVNPLIEMTDMRDAQRSYEANLNIIGATRRMIQRTLDI 138 VN E +++ Q+ Y AN ++ + ++I Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 58.2 bits (140), Expect = 2e-11 Identities = 49/291 (16%), Positives = 82/291 (28%), Gaps = 40/291 (13%) Query: 77 DIVVESNIVRAMPAREQLPQRPGLNAEQPAARIAPVQDMPAWNEP---------EPKPEA 127 V +NI + +P P N E APV PA P K E+ Sbjct: 990 QTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPP-PAPATPSETTETVAENSKQES 1048 Query: 128 AELAEVPVPELPPRPQRPSFIDEVRRTVPA----------AAERREPPPPFPPEPPLPPR 177 + + Q E + V A +E +E E + Sbjct: 1049 KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEK 1108 Query: 178 RPRQDVRAEPRVADEPRL--EPRPERVIPRSEQAMPRPLRPAEPQRQAEAARAPEGPRLP 235 + V E + + P++ + P++ + Q P R +P + ++ Sbjct: 1109 EEKAKVETE-KTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN---- 1163 Query: 236 PVRAAERAERIEPAERVAAPPPPPVAQ------MPSPPPAPPAPPPVDQSAEANLAEMAQ 289 A+ +PA+ ++ PV + S P P N E + Sbjct: 1164 -----TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS-ESSN 1217 Query: 290 RLEAALRRPSADAPAPGGPAALRPARGEPAAASAPAPVKTSFENLEDEMAS 340 + + RR P PA A + L D A Sbjct: 1218 KPKNRHRRSVRSVPHNVEPATTSSNDRST-VALCDLTSTNTNAVLSDARAK 1267 Score = 35.8 bits (82), Expect = 2e-04 Identities = 28/185 (15%), Positives = 45/185 (24%), Gaps = 30/185 (16%) Query: 156 PAAAERREPPPPFPPEPPLPPRRPRQDVRAEPRVADEPRLEPRPERVIPRSEQAMPRPLR 215 P +R + P AD P + E I R ++A P Sbjct: 983 PEVEKRNQTVDTTNITTP------------NNIQADVPSVPSNNEE-IARVDEAPVPPPA 1029 Query: 216 PAEPQRQAEAA---------------RAPEGPRLPPVRAAERAERIEPAERVAAPPPPPV 260 PA P E + A+ A+ A Sbjct: 1030 PATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089 Query: 261 AQMPSPPPAPPAPPPVDQSAEANLAEMAQRLEAALRRPSADAPAPGGPAALRPARGEPAA 320 ++ + E E + E + S +P ++P EPA Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVETEKTQEVP-KVTSQVSPKQEQSETVQPQ-AEPAR 1147 Query: 321 ASAPA 325 + P Sbjct: 1148 ENDPT 1152
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 269 bits (688), Expect = 8e-94 Identities = 113/217 (52%), Positives = 157/217 (72%) Query: 8 INLGGAGGGGVTERAVQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTAMGTATAPPN 67 + GGG VQ + +T L+ P+IL+MMTSFTRI++V LLR A+GT +APPN Sbjct: 27 TSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPN 86 Query: 68 SVIIALAMFLTAFVMGPVLQKSYDDGVRPLIENQITVEDALQRASVPLRGFMQKNVREKD 127 V++ LA+FLT F+M PV+ K Y D +P E +I++++AL++ + PLR FM + RE D Sbjct: 87 QVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREAD 146 Query: 128 LKLFMDLSGEAPPATPDELSLRILVPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMS 187 L LF L+ P P+ + +RIL+PA++ SELK AF+IGF +F+PFLIIDLV+ASVLM+ Sbjct: 147 LGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMA 206 Query: 188 MGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 224 +GMMM+PP ++LPFKL+ FVLVDGW L+ GSL QS+ Sbjct: 207 LGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.0 bits (98), Expect = 2e-05 Identities = 30/156 (19%), Positives = 45/156 (28%), Gaps = 26/156 (16%) Query: 312 AKAPAEKPAAEKATAEKPNGEKPKAAVQPELVPPTSETIAKEMKAEAKPAIAAPATEPAA 371 K E AT EK K + E+ TS+ K+ ++E A PA E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 372 EPAQAAAPAPMKAEAASEAPKPEAPKS------------------ETPKFEAP------- 406 + A +E P E + E P+ P Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTV 1211 Query: 407 KSEVAKVETPK-ADMVKAEPAKPEAAKPEQANGETA 441 SE + + V++ P E A + T Sbjct: 1212 NSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247 Score = 38.5 bits (89), Expect = 2e-04 Identities = 43/219 (19%), Positives = 68/219 (31%), Gaps = 14/219 (6%) Query: 287 NYNIDVAYQQPDKKVAAMSSDTLPGAKAPAEKPAAEKATAEKPNGEKPKAAVQPELVPPT 346 N DV + + A + APA + AE E E Sbjct: 1002 NIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN-EQDATE 1060 Query: 347 SETIAKEMKAEAKP-AIAAPATEPAAEPAQAAAPA-PMKAEAASEAPKPEAPKSETPKF- 403 + +E+ EAK A T A+ + + + K E K ET K Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQ 1120 Query: 404 EAPKSEVAKVETPKADMVKAEPAKPEAAKPEQANGETAKPMEKPAEMAANGAATLEALRD 463 E PK V +PK + + + E A+ +P + A E + Sbjct: 1121 EVPK--VTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSN 1178 Query: 464 SEGLRLTFGFGQVTPAALFRRGDTVWMVLDSTKPIDLEP 502 E VT + G++V ++T P +P Sbjct: 1179 VEQP--------VTESTTVNTGNSVVENPENTTPATTQP 1209
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 396 bits (1018), Expect = e-139 Identities = 181/372 (48%), Positives = 254/372 (68%), Gaps = 11/372 (2%) Query: 19 RLFQAACAAMLALA----STAMPAHATSRIKDLANIEGVRQNQLIGYGLVVGLNGTGDTL 74 R+ + AA++ A ST TSRIKD+A+++ R NQLIGYGLVVGL GTGD+L Sbjct: 2 RVLRIIAAALVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSL 61 Query: 75 NNIPFTKQSLQAMLERMGVNIRGATIRTGNVAAVMVTGNLPPFATQGTRMDVTVSALGDA 134 + PFT+QS++AML+ +G+ +G N+AAVMVT NLPPFA+ G+R+DVTVS+LGDA Sbjct: 62 RSSPFTEQSMRAMLQNLGITTQGGQSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDA 121 Query: 135 KNLQGGTLLVTPLLGADGNVYAVAQGSLAISGFQAEGEAAKIVRGVPTVGRIANGAIIER 194 +L+GG L++T L GADG +YAVAQG+L ++GF A+G+AA + +GV T R+ NGAIIER Sbjct: 122 TSLRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIER 181 Query: 195 EIEFALNRLPNVRLALRNADFTTAKRIAAAINDF----LGVKTAEPIDPSTVQLSVPPEF 250 E+ N+ L LRN DF+TA R+A +N F G AEP D + + P Sbjct: 182 ELPSKFKDSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRVA 241 Query: 251 KGNVVAFLTEIEQLQVDPDLAAKIVIDERSGIIVMGRDVRVATVAVAQGNLTVTISESPQ 310 ++ + EIE L V+ D AK+VI+ER+G IV+G DVR++ VAV+ G LTV ++ESPQ Sbjct: 242 --DLTRLMAEIENLTVETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQ 299 Query: 311 VSQPNPLSQGRTVVTPRTSVGVQEDGKKFAVVKDGVSLQQLVDGLNGLGIGPRDLISILQ 370 V QP P S+G+T V P+T + ++G K A+V+ G L+ LV GLN +G+ +I+ILQ Sbjct: 300 VIQPAPFSRGQTAVQPQTDIMAMQEGSKVAIVE-GPDLRTLVAGLNSIGLKADGIIAILQ 358 Query: 371 AIKAAGAIEADI 382 IK+AGA++A++ Sbjct: 359 GIKSAGALQAEL 370
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 34.7 bits (79), Expect = 7e-05 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 37 SKVSPKAQAKAKATATDFEAMFLNSMFSQMMSGVKGDGPFGDTPGTGVWRSMLTEQYSKN 96 +K A + A E MF+ M M + DG F + T ++ SM +Q ++ Sbjct: 23 AKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDGLF-SSEHTRLYTSMYDQQIAQQ 81 Query: 97 FAKAGGVGISNDVFRTLILQQAKSSSS 123 G+G++ + + + +Q S Sbjct: 82 MTAGKGLGLAEMMVKQMTPEQPLPEES 108
>FLAGELLIN#Flagellin signature. Length = 507 Score = 55.8 bits (134), Expect = 2e-10 Identities = 78/508 (15%), Positives = 155/508 (30%), Gaps = 17/508 (3%) Query: 17 LQNTASLLATTQNNLATGNKVNTALDNPTEFFTAQSLNNRASDIANLLDSIGNGVQVLQA 76 L + S L++ L++G ++N+A D+ A + + + +G+ + Q Sbjct: 17 LNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQT 76 Query: 77 ANTGLTSLQKLVDSAKSIASQVLQAPTGYTTKSSITSAVIPGATANNLLGSSSNAFATGS 136 L + + + ++ Q + SI + + + + + Sbjct: 77 TEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQ----TQFN 132 Query: 137 AVSNDNLSTSVAITGTTRLSGTPSSTSNDLASSITTGDTLTVNGVVFTFVAGSVSAGTNI 196 V + + I T + + D VNG V S+ N+ Sbjct: 133 GVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNV 192 Query: 197 GVGDTVNNLLAAIDSVTGASATPSSVSGGKIVIATGTAQDLTLGGTALAKLGLGSVSPVS 256 DT + A + + + T A+ Sbjct: 193 TGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNT------- 245 Query: 257 RNPPALTGQTLTIASTGGGVATNITFGTGASQISTLAQLNTALAANNLQASLSTTGQLTI 316 A+ T ++ G A I + + + G+++ Sbjct: 246 ----AVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVST 301 Query: 317 LTTNEAASSTIGTVAGSSTAASQAFNGVTASTPVADTNSQTTRAGLIAQYNNVLAQINTT 376 E + T+ + + A + + + N Q T + L+ + Sbjct: 302 TINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDL--E 359 Query: 377 AQDASFNGINLLNGDTLKLTFNETGRSTLNITGVTFNSTGLGLSSLVVGTDFLDSNSANK 436 A +A + + TL + + T G+S+L+ S Sbjct: 360 ANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTAN 419 Query: 437 VLTTLNSASTAIRSEASSLGSNLSIVQIRQDFNKNLINVLQTGSSNLTLADTNEEAANSQ 496 L +++SA + + + SSLG+ + N + L + S + AD E +N Sbjct: 420 PLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMS 479 Query: 497 ALSTRQSIAVSALALANQSQASVLQLLR 524 Q S LA ANQ +VL LLR Sbjct: 480 KAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 60.1 bits (145), Expect = 1e-11 Identities = 84/498 (16%), Positives = 154/498 (30%), Gaps = 7/498 (1%) Query: 19 LQSTAQLLATTQNNLSTGKKVNSALDNPTNFFTAQGLDNRASDISNLLDGIGNGVQVLQA 78 L + L++ LS+G ++NSA D+ A + ++ +G+ + Q Sbjct: 17 LNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQT 76 Query: 79 ANTGITSLQKLVDSAKSIANQVLQSSVGYSTKSSVTSAALTGATATSLLGASSTAVTGSV 138 + + + + ++ Q + S S+ + S+ V Sbjct: 77 TEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEI--QQRLEEIDRVSNQTQFNGV 134 Query: 139 VQNDATTSSAITGSTKLSGTSGSSSNDLATGITSGETLVVNGTTFTFVTGTSSSGTTIGI 198 I T + + VNG V SS + Sbjct: 135 KVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTG 194 Query: 199 GDTVSNLLSTIQTATGVTGSVSAGAITLTPPAAGLTLSGSTGTLAKLGLSTVGDGLAGQT 258 DT + + + V+ P + + T +T D Sbjct: 195 YDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLF---K 251 Query: 259 LTVGATGGGTATSITFGLGTGQVNSLNDLNTKLAANNLQASIDSSGKITLTTTNDAASAT 318 T G A +I + G+ D + + D +GK++ T + + T Sbjct: 252 TTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLT 311 Query: 319 IGTIGGTAAASSQSFNGLTAAAPVADSTAQAQRASLVSQYNNVLAQINTTAADASFNGVN 378 + I AA + L ++ V S Q N + A +A Sbjct: 312 VADITAGAANVDAA--TLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESK 369 Query: 379 LLNGDTLKLTFNENGKSTLSITGVTFNTGGLGLSTLTSGTDFLDNNSANKVIGVLNTASS 438 + K TL+ + + G+STL + S + +++A S Sbjct: 370 ITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALS 429 Query: 439 TLRSEASTLGSNLSVVQIRQDFNKNLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAV 498 + + S+LG+ + N + L + S + AD E +N Q Sbjct: 430 KVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGT 489 Query: 499 SALSLANQSQASVLQLLR 516 S L+ ANQ +VL LLR Sbjct: 490 SVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 58.9 bits (142), Expect = 2e-11 Identities = 85/499 (17%), Positives = 153/499 (30%), Gaps = 8/499 (1%) Query: 19 LQSTAQLLATTQNNLSTGKKVNSALDNPTNFFTAQGLDNRASDINNLLDGIGNGVQVLQA 78 L + L++ LS+G ++NSA D+ A + + +G+ + Q Sbjct: 17 LNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQT 76 Query: 79 ANTGITSLQKLVDSAKSIANQVLQSAVGYSTKSSVTSAALSGATATDLLGSSSTAVTGSV 138 + + + + ++ Q S S+ ++ S+ V Sbjct: 77 TEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEI--QQRLEEIDRVSNQTQFNGV 134 Query: 139 VQNDATTSSAITGSTKLSGTSGSSSNDLATGITSGETLVVNGTTFTFVTGTSSSGTTIGI 198 I T + + VNG V SS + Sbjct: 135 KVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTG 194 Query: 199 GDTVSNLLSTIQTATGVTGSVSAGAITLTPPAAGLTLSGSSGTLAKLGLSTVGDGLAGQT 258 DT + + + V+ P + + T +T D Sbjct: 195 YDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLF---K 251 Query: 259 LTVGATGGGTATSITFGLGTGQVKSLNDLNTKLAANNLQASIDSSTGKITLSTTNDAASA 318 T G A +I + G+ D + + D + +STT + Sbjct: 252 TTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK---VSTTINGEKV 308 Query: 319 TIGTIGGTAAASSQSFNGLTAAAPVADSTAQTQRSNLVAQYNNVLTQINLTASDASFNGV 378 T+ TA A++ L ++ V S Q + N +L A++A Sbjct: 309 TLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGES 368 Query: 379 NLLNGDTLKLTFNENGKSTLSITGVTFNTGGLGLSTLTSGTDFLDNNSANKVIGLLTTAS 438 + K TL+ + + G+STL + S + + +A Sbjct: 369 KITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSAL 428 Query: 439 STLRNEASTLGSNLSVVQIRQDFNKNLINVLQTGSSNLTLADTNEEAANSQALSTRQSIA 498 S + S+LG+ + N + L + S + AD E +N Q Sbjct: 429 SKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAG 488 Query: 499 VSALSLANQSQASVLQLLR 517 S L+ ANQ +VL LLR Sbjct: 489 TSVLAQANQVPQNVLSLLR 507
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 110 bits (275), Expect = 2e-27 Identities = 90/336 (26%), Positives = 156/336 (46%), Gaps = 24/336 (7%) Query: 4 SSALATAMSGLRSTQAALSIISSNVANANTPGY----VAQNPNQIEVASGG-FGSTVMTT 58 SS + AMSGL + QAAL+ S+N+++ N GY + +GG G+ V + Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 59 GVNRQLDLFVQNQLRTETSGGAYADQMANILKQLQSVYGTPGGSGTLETALNNFTTALQS 118 GV R+ D F+ NQLR + + + ++ ++ T + +L T + +F T+LQ+ Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST--STSSLATQMQDFFTSLQT 118 Query: 119 LSNNPSNQSAQSVALSAAQGVAQQLNATTKGIQTLRSNVEQDIGDSVTQVNGALKQIATL 178 L +N + +A+ + ++G+ Q T + ++ V IG SV Q+N KQIA+L Sbjct: 119 LVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASL 178 Query: 179 NTQ---LQGLSSSDPLAATLQDQRDNAIDTLSKYVDIRVVPDSTNGISVFTNSGIQLVGA 235 N Q L G+ + L DQRD + L++ V + V ++ +G LV Sbjct: 179 NDQISRLTGVGAGAS-PNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQG 237 Query: 236 GLTSEFTFSSPGTLDATSQYNSNPTKNGVGQLNIKLSNGVSLDVVANSLLNSGQIAADLK 295 + + ++ ++P++ V ++ N + LLN+G + L Sbjct: 238 STARQLA-----AVPSS----ADPSRTTVAYVDGTAGNIEIPE----KLLNTGSLGGILT 284 Query: 296 LRDQTLVQAQTQVDQLAATFASALSDKTTAGTTVSG 331 R Q L Q + + QLA FA A + + AG +G Sbjct: 285 FRSQDLDQTRNTLGQLALAFAEAFNTQHKAGFDANG 320 Score = 49.6 bits (118), Expect = 3e-08 Identities = 23/79 (29%), Positives = 37/79 (46%) Query: 540 TVSGYLQQFVSQQGSASTLATQLSQGQSVVVATLKEKFQSTAGVNMDSEMSNLIQVQNTY 599 + + VS G+ + S Q VV L + QS +GVN+D E NL + Q Y Sbjct: 466 SFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYY 525 Query: 600 AANAHIMSVVQSMMQSLLQ 618 ANA ++ ++ +L+ Sbjct: 526 LANAQVLQTANAIFDALIN 544
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.4 bits (94), Expect = 1e-04 Identities = 41/319 (12%), Positives = 97/319 (30%), Gaps = 18/319 (5%) Query: 781 VEDAERSLTTLVVNTSETIQTGARSAQQALLNVSTDVGSQLKSTSAEVERALTGAGSAAA 840 VE +++ T + T IQ S ++ + A V S Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVP-------SNNEEIARVDEAPVPPPAPATPSETT 1037 Query: 841 SSILTSAREAQATLVTASSETAEQIK-SLSADVERTLTAAGSTTAASILAGAREVQNTLV 899 ++ ++++ T+ + E + E +T + E + T Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 900 SASADAATHVKSLATDVEQALTAAGSATAASILAGAREVQNTLVSASANAADHVKSLAAD 959 + + + AT K VE T + + + + A + + Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 960 VQ--RSLTAAGTDTAETITSGARQA---QSALLAASQEAAEQVKALTVDVQRSLSIAGTT 1014 Q + TA A+ +S Q + + + Q +++ + Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 1015 TAESITGGAREAQSTLISASSEAANHVKSLAADVERTLAAVGTNTAATIVDSARDVQSKL 1074 ++ + + + ++ ++N ++A TNT A + D+ Q Sbjct: 1218 KPKNRHRRSVRSVPHNVEPATTSSNDRSTVA-----LCDLTSTNTNAVLSDARAKAQFVA 1272 Query: 1075 VTASTEAADHVKSLAIDVE 1093 + + H+ L ++ E Sbjct: 1273 LNVGKAVSQHISQLEMNNE 1291
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.009 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 25/101 (24%) Query: 358 LLENAARHAAS--------TVRIVAGASPLVVTVEDDGPGIPDAQIGRVLERGGRLDEQG 409 L+EN +H + ++ + + VE+ G L Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA--------------LKNTK 308 Query: 410 PGSGLGLAIVQDVLEA-YG--WRLQIGRAELGGARIAIAPA 447 +G GL V++ L+ YG ++++ + + + P Sbjct: 309 ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.7 bits (233), Expect = 2e-24 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 1/125 (0%) Query: 2 RVLLVEDDPRLSSDLSRTLQAAGYLVETSANGEQAWFLGDTEDYGAVVLDLGLPGMDGLS 61 +L+ +DD + + L++ L AGY V ++N W D VV D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLKRWRGAGRHMPVLILTARASWAERVDGIDAGADDYLPKPFRNEELLARL-RAIVRRSA 120 +L R + A +PVL+++A+ ++ + + GA DYLPKPF EL+ + RA+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GHAAP 125 + Sbjct: 125 RPSKL 129
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 528 bits (1361), Expect = 0.0 Identities = 200/333 (60%), Positives = 249/333 (74%), Gaps = 1/333 (0%) Query: 6 ILVTGAAGFIGFHLTQQLLAEGRQVVGLDNINSYYDPTLKEARLALLQAQPGFSFHKLDL 65 LVTGAAGFIGFH++++LL G QVVG+DN+N YYD +LK+ARL LL AQPGF FHK+DL Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELL-AQPGFQFHKIDL 61 Query: 66 VDRAAIKALFAAHRFPAVVHLAAQAGVRYSLENPHAYVDANLEGFINVLEGCRHHGCGHL 125 DR + LFA+ F V + VRYSLENPHAY D+NL GF+N+LEGCRH+ HL Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 126 LFASSSSVYGANTKLPFSVKDNVDHPISLYAASKKANELMAHSYSHLYRLPATGLRFFTV 185 L+ASSSSVYG N K+PFS D+VDHP+SLYAA+KKANELMAH+YSHLY LPATGLRFFTV Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181 Query: 186 YGPWGRPDMAMFIFAKAILAGQPVRLFNHGQMRRDFTYVDDIVQAIVRLIGRPPQGNPDW 245 YGPWGRPDMA+F F KA+L G+ + ++N+G+M+RDFTY+DDI +AI+RL P + W Sbjct: 182 YGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQW 241 Query: 246 NGNTPDPSSSRAPWRIYNIGNNHPEQLTDVITLLEKEFGRPAIKEMLPMQPGDVEATYAD 305 T P++S AP+R+YNIGN+ P +L D I LE G A K MLP+QPGDV T AD Sbjct: 242 TVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSAD 301 Query: 306 VSDLERDIGFRPATSIVDGIARFARWYRDYHRI 338 L IGF P T++ DG+ F WYRD++++ Sbjct: 302 TKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 220 bits (563), Expect = 6e-72 Identities = 92/333 (27%), Positives = 144/333 (43%), Gaps = 30/333 (9%) Query: 4 RILVTGGAGFIGSHLVEHLLSSGYVVTVLDDLSTGSIDNLAEAN----ETGRLRLIEGSV 59 + LVTG AGFIG H+ + LL +G+ V +D+L+ +L +A + + + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 60 LDAQAVET--AMHQCDYVFHLAVQC-VRKSLGKPIENHEINATGTLRMLEAARKHNIKRF 116 D + + A + VF + VR SL P + N TG L +LE R + I+ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 117 VYCSSSEVYGSVSTGLLDE-DTLCRPVTVYGAAKLAGELYTDAYHQTYGLPTVVVRPFNA 175 +Y SSS VYG D++ PV++Y A K A EL Y YGLP +R F Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181 Query: 176 YGPRAHERGDLAEVIPRFFIRCLNGLPPVIFGDGSNGRDFTYVTEVARGLALACDA---- 231 YGP R D+A + +F L G ++ G RDFTY+ ++A + D Sbjct: 182 YGPWG--RPDMA--LFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHA 237 Query: 232 ----DGLVGSK---------VNIAYGQMISIGQVAAEVIKATGRNDLGIEHISGRPGDVR 278 G+ NI + + + A G + + +PGDV Sbjct: 238 DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI-EAKKNMLPLQPGDVL 296 Query: 279 VLSADVSRARRLLGYRAEIDFAHGLRRYLDWFR 311 SAD ++G+ E G++ +++W+R Sbjct: 297 ETSADTKALYEVIGFTPETTVKDGVKNFVNWYR 329
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 53.7 bits (129), Expect = 1e-09 Identities = 47/137 (34%), Positives = 63/137 (45%), Gaps = 18/137 (13%) Query: 23 VDDGKSTLIGRLLHDSHVIFEDQLRSLASDSQKFGTTGEEIDLALLVDGLEAEREQGITI 82 VD GK+TL LL++S I +L S+ GTT D ER++GITI Sbjct: 12 VDAGKTTLTESLLYNSGAI--TELGSVDK-----GTT--------RTDNTLLERQRGITI 56 Query: 83 DVAY-RFFSTPLRSFIVADTPGHEQYTRNMATGASLASLAIILIDARKGVLLQTRRHSLI 141 F + I+ DTPGH + + S+ AI+LI A+ GV QTR Sbjct: 57 QTGITSFQWENTKVNII-DTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA 115 Query: 142 CSLLGIRHIVLAINKMD 158 +GI I INK+D Sbjct: 116 LRKMGIPTIFF-INKID 131
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.0 bits (65), Expect = 0.009 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 28 SAVIPWAVFTRYILNSAA--SWPEPMAVLLTILLTFIGAAAG 67 A++ + ++ +A SW P++V+L + L +G Sbjct: 873 PALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.5 bits (79), Expect = 8e-04 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 771 LRFFAPMKEFTHEFIARLTQLDYARAMAFVALDEATNELVGVVRIHSDSIYESGEYA--- 827 RF P + + ++ ++ AF+ E N +G ++I S+ YA Sbjct: 40 ERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLE--NNCIGRIKIRSNW----NGYALIE 93 Query: 828 -ILLRSDLKGRGLGWALMQLIIEYAKAEGLKMISGDVLQENIVMLEMCRNLGF 879 I + D + +G+G AL+ IE+AK + + NI F Sbjct: 94 DIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 29.2 bits (65), Expect = 0.014 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 17/100 (17%) Query: 76 GKSAADFVHEHGRKVSE-VMTRSPLTITEDAALAEI------VEIMEKNHVKRLPVVKGD 128 G + ADF E + E R T+ D+ L ++ V+ N K+ Sbjct: 175 GDAVADFSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVF---- 230 Query: 129 QVVGIVSRANLLQAVASLGRQVPDPTADDDHIRDRVIDMM 168 + N+ + +A L ++ P+ D + + DR +D + Sbjct: 231 ------TCENIRKQIAELLQETPEDITDQEDLLDRGLDSV 264
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 26.8 bits (59), Expect = 0.030 Identities = 10/79 (12%), Positives = 32/79 (40%), Gaps = 7/79 (8%) Query: 76 YLARVGVIGERSGQGLQRRMMRAIERYGRRSGLYCIVSDTTDNIVSANNFI-RCGYAL-- 132 + + V + +G+ ++ + + + ++ +T D +SA +F + + + Sbjct: 91 LIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150 Query: 133 ----FQPPRPWAWDHSLYW 147 P A + +++W Sbjct: 151 VDTMLYSNFPTANEIAIFW 169
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 32.6 bits (74), Expect = 0.001 Identities = 26/116 (22%), Positives = 33/116 (28%), Gaps = 5/116 (4%) Query: 72 PAASAPAAAAPVAAAPAVTAP---ATLAAAPVVTPPTPVAAAPVQMPAAPAPVASTALVA 128 PA + P + VA PA P PVV P P AP + Sbjct: 44 PAPAQPISVTMVA--PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 101 Query: 129 QPQPATPDPAPAPTTVATAPPAAQGAPAPAADPNSPLGLWATEGGKGNVVIEPCGP 184 +P+P P + +P P P AT V GP Sbjct: 102 KPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGP 157
>PF06580#Sensor histidine kinase Length = 349 Score = 36.0 bits (83), Expect = 3e-04 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 17/127 (13%) Query: 275 RSAMLRDIDQVSRMLDETLDYLRDDTKAEQPARIELSSLLETICCDFADVGHAVSYRGPQ 334 R+ +L D + ML + +R + ++ L+ L + S + Sbjct: 183 RALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVV----DSYLQLASIQFED 238 Query: 335 RL--VCEGRPRALSRAVTN-----VVENAVKHGTE-----VVVSLDSTAD-GVIAIEVAD 381 RL + P + V +VEN +KHG + L T D G + +EV + Sbjct: 239 RLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVEN 298 Query: 382 DGPGIPQ 388 G + Sbjct: 299 TGSLALK 305
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 3e-20 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 4/151 (2%) Query: 18 AARILCVEDDREIAALLTELLQEHGFAPRFVASAAAMNDVLQREQVDLIMLDLMLPDEDG 77 A IL +DD I +L + L G+ R ++AA + + DL++ D+++PDE+ Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 78 MSICRRLRQISA-VPIIMVTAKGEDIDRILGLELGADDYVVKPFNPRELVARI-RALLRR 135 + R+++ +P+++++A+ + I E GA DY+ KPF+ EL+ I RAL Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 136 SQLHPAVIAARQAPMMFDGWRIEPATRTLFD 166 + + Q M G A + ++ Sbjct: 123 KRRPSKLEDDSQDGMPLVG--RSAAMQEIYR 151
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.8 bits (106), Expect = 3e-07 Identities = 23/178 (12%), Positives = 57/178 (32%), Gaps = 11/178 (6%) Query: 69 VIPTPQLWVVSAPVSGMVTNLAVARGDRVSIGQPLLTLESPSFVSLQREYLHALAQEVLA 128 + + + + + +V + V G+ V G LL L + + + +L Q L Sbjct: 90 LTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149 Query: 129 VQQLKRNADLFEGKAIPQRVLESSQAEARQASIVVAERRQMLHLSGLSDEAVARLTNEAA 188 + + + E +P+ L + V ++ + + Sbjct: 150 QTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIK---------EQFSTWQN 200 Query: 189 ISATLTVNAPQAASVVDIMVSPGQRMEQAAPLV--KLARLSPLWAEIAIPATNIAAIK 244 +N + + +++ R E + + +L S L + AI + + Sbjct: 201 QKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQE 258
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 691 bits (1785), Expect = 0.0 Identities = 217/1037 (20%), Positives = 443/1037 (42%), Gaps = 40/1037 (3%) Query: 6 LVAFALAQRLFVLLSVLLLVGAALVFLPSLPIDAFPDVSPVQVKIIMKAPGLTPEEVEQR 65 + F + + +F + ++L+ A + + LP+ +P ++P V + PG + V+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 66 ITVPIELELLGLPNKKILR-TTTKYALADITVDFEDGTDIYWARNQVSERLSNVSRDFPD 124 +T IE + G+ N + T+ IT+ F+ GTD A+ QV +L + P Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 125 GVSGGLAPITSPLGEMFM---FTIESPELSLAERRSLLDWVIRPALRTVPGVADVNSLGG 181 V + M F ++P + + + ++ L + GV DV L G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQ-LFG 179 Query: 182 FVRAFEIVPRNDALAARGISYELFRKAIEANSRNDGAGRVNQGED------SALVRIEGS 235 A I D L ++ ++ + AG++ +A + + Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 236 IRSIDDIKAIVVDT-RDNIPIRVSDVARVRIGALTRYGAVTADGKGETVEGLVLGLRGAN 294 ++ ++ + + D +R+ DVARV +G +GK + GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGAN 298 Query: 295 AGQLVRDVRARLEELKPSLPASVTINVFYDRSRLVNRAVGTVVRALAEATVLVVVLLLLF 354 A + ++A+L EL+P P + + YD + V ++ VV+ L EA +LV +++ LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 355 LGNWRASLVIALSLPLAIVIALLVMRAVGMSANLMSLGGLAIAIGMLIDALVVVVENIVG 414 L N RA+L+ +++P+ ++ ++ A G S N +++ G+ +AIG+L+D +VVVEN+ Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVE- 417 Query: 415 NLGRHESNRAAPLVHIVYRSVCEVLQPVASGVLIIIIVFVPLLTLQGLEGKLFIPVALAI 474 R P +S+ ++ + +++ VF+P+ G G ++ ++ I Sbjct: 418 ---RVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 475 IFALAASLLLALTVLPVATSFALKSASHEDPLLVRA-----------AQRAYAPALTWAL 523 + A+A S+L+AL + P + LK S E + Y ++ L Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 524 ANERKVIAVALLSLVAAGYGYAQLGKTFMPTMDEGDVIVSVETLPSVNLDESLAINARLQ 583 + + + + L + + +L +F+P D+G + ++ + + + ++ Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 584 TALMKVPDIAGIIARTGSDELGLDPMGPNQTDTFLVLKPADQR--QSENRDVLLQKLRDV 641 +K A + + + N F+ LKP ++R + + ++ + + Sbjct: 595 DYYLKNE-KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAK-- 651 Query: 642 LADFPGISLSFTQPIDM-RVQEMISGVRGDVA-VKIFGPDIGTLNDIAAKLSTILSSIDG 699 + I F P +M + E+ + D + G L +L + + Sbjct: 652 -MELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 700 A-EDVYTTLNEGAQYYTVNVNRLEAGRLGLTVDSIANSLRTQIEGRTIGTALENGWRTPI 758 + V E + + V++ +A LG+++ I ++ T + G + ++ G + Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 759 LVRGSETTREAPTLLAMLPLTLAAGQHVALSQVARIQRVDGPVKIDREDGNRMSVVRSNV 818 V+ R P + L + A G+ V S V G +++R +G ++ Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA 830 Query: 819 RGRDMVGFVQAAQQKVASELQLPAGYRLTWGGQFENQQRAAARLSVVVPVAIGLIFVLLF 878 G A + +AS +LPAG W G ++ + + +V ++ ++F+ L Sbjct: 831 APGTSSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 879 TTFGSVRQALLVLVNIPFALIGGVFALVSTGEYLSVPASVGFIALLGIAVLNGVVLVSYF 938 + S + V++ +P ++G + A + V VG + +G++ N +++V + Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 939 NQL-RAHGLSEQRIVVDGAKRRLRPVLMTASITALGLIPLLFATGPGSEVQRPLAIVVIG 997 L G + + RLRP+LMT+ LG++PL + G GS Q + I V+G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 998 GLLSSTLLTLILLPILY 1014 G++S+TLL + +P+ + Sbjct: 1009 GMVSATLLAIFFVPVFF 1025 Score = 90.3 bits (224), Expect = 2e-20 Identities = 88/512 (17%), Positives = 164/512 (32%), Gaps = 41/512 (8%) Query: 5 RLVAFALAQRLFVLLSVLLLVGAALVFLPSLPIDAFPDVSPVQVKIIMKAPGLTPEEVEQ 64 V L LL L+V +V LP P+ +++ P +E Q Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 65 RITVPIELELLGLPNKKILRTTTKYAL---------ADITVDFEDGTDIYWARNQVSERL 115 ++ + L + T V + + N + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 116 SNVSRDFPDGVSGGLAPITSP----LGEMFMFTIESPELSLAERRSLLDW---VIRPALR 168 + G + P P LG F E + + +L ++ A + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 169 TVPGVADVNSLGGFVRA-FEIVPRNDALAARGISYELFRKAIEANSRNDGAGRVNQGEDS 227 + V G A F++ + A G+S + I Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 228 ALVRIEGSIR---SIDDIKAIVVDTRDNIPIRVSDVARVRIGA----LTRY-GAVTADGK 279 + ++ + +D+ + V + + + S L RY G + + + Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQ 827 Query: 280 GETVEGLVLGLRGANAGQLVRDVRARLEELKPSLPASVTINVFYDRSRLVNRAVGTVVRA 339 GE G G D A +E L LPA + + + S + Sbjct: 828 GEAAPGTSSG-----------DAMALMENLASKLPAGIGYD-WTGMSYQERLSGNQAPAL 875 Query: 340 LAEATVLVVVLLLLFLGNWRASLVIALSLPLAIVIALLVMRAVGMSANLMSLGGLAIAIG 399 +A + V+V + L +W + + L +PL IV LL ++ + GL IG Sbjct: 876 VAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIG 935 Query: 400 MLIDALVVVVENIVGNLGRHESNRAAPLVHIVYRSVCEVLQPVASGVLIIIIVFVPLLTL 459 + +++VE +L E +V +V L+P+ L I+ +PL Sbjct: 936 LSAKNAILIVEFAK-DLMEKEGK---GVVEATLMAVRMRLRPILMTSLAFILGVLPLAIS 991 Query: 460 QGLEGKLFIPVALAIIFALAASLLLALTVLPV 491 G V + ++ + ++ LLA+ +PV Sbjct: 992 NGAGSGAQNAVGIGVMGGMVSATLLAIFFVPV 1023
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 27.5 bits (61), Expect = 0.016 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 8/94 (8%) Query: 53 EHADKFTDRILFLDGFPNMQV--------LDPLRIGQNVKEIIECDLAAEIGARTLYQEA 104 E D +R+L + G P V + + E+++ + + + Sbjct: 59 ETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFV 118 Query: 105 ATYCHGVKDYVSRDLFEQLMKDEEHHIDFLETQL 138 +D + DLF L+++ E + L + L Sbjct: 119 IGLAEENQDNATADLFVGLIEEVEKQVWMLSSYL 152
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 25.8 bits (56), Expect = 0.028 Identities = 10/18 (55%), Positives = 12/18 (66%) Query: 70 IDGGGDGGGDGGGDGGGG 87 ++G DG G GGG G GG Sbjct: 25 LNGTPDGSGSGGGGGKGG 42
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 29.9 bits (67), Expect = 0.002 Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 4/87 (4%) Query: 1 MKKTLAALAAVATLSTAALAPAPAEARNGRVAAGV-AAGLIGGALIGGAIAAGSNPYYYG 59 MKKT A+ AVA A +A A + A + + I N G Sbjct: 1 MKKTAIAI-AVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAG 59 Query: 60 P--GYSYSPGYAYGPGYSYYGGPAYVA 84 GY +P + GY + G Y Sbjct: 60 AFGGYQVNPYVGFEMGYDWLGRMPYKG 86
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.033 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 9/85 (10%) Query: 31 RLPVMLKGPTGCGKT---RFIEHMAWRLGKPLITV---AAHEDMTAADLAGRYLLEPAGT 84 L +M+ G +G GK R + R P + + A D+ ++L G G Sbjct: 160 DLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGA 219 Query: 85 V-WHDGPLTLAVRHGAICYLDEIVE 108 G A G +LDEI + Sbjct: 220 QTRSTGRFEQA--EGGTLFLDEIGD 242
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 876 bits (2265), Expect = 0.0 Identities = 312/570 (54%), Positives = 395/570 (69%), Gaps = 8/570 (1%) Query: 3 TIDRRDYAALYGPTTGDAVRLGDTSLFAVVEKDHAVYGDECLHGGGKTLRDGIGMAGLTS 62 + R YA ++GPT GD VRL DT LF VEKD +G+E GGGK +RDG+G + +T Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 63 AEGALDFLLCNVTVIDPVIGIVKGDLGIRNGRIVGIGKAGNPAIMDGVDPRLIVSTGTTV 122 GA+D ++ N ++D GIVK D+G+++GRI IGKAGNP + GV +IV GT V Sbjct: 64 EGGAVDTVITNALILDHW-GIVKADIGLKDGRIAAIGKAGNPDMQPGVT--IIVGPGTEV 120 Query: 123 RDCEGLIATPGAIDVHVHFDSAGLVEHALASGITTMIGGSLGPIT---VGIDSGGPFNTG 179 EG I T G +D H+HF +E AL SG+T M+GG GP + GP++ Sbjct: 121 IAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIA 180 Query: 180 KMLQAAEAWPMNFGFLGRGNSHREAPLIEQLQTGVMGLKLHEDWGTMPAAIDTCLKVADA 239 +M++AA+A+PMN F G+GN+ L+E + G LKLHEDWGT PAAID CL VAD Sbjct: 181 RMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADE 240 Query: 240 CDFQVQIHTDTLNESGFVENTLEAIGGRTIHMYHTEGAGGGHAPDIIRVAGEMHCLPSST 299 D QV IHTDTLNESGFVE+T+ AI GRTIH YHTEGAGGGHAPDIIR+ G+ + +PSST Sbjct: 241 YDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSST 300 Query: 300 NPTNPYTVNTFDEHLDMTMVCHHLNPAIPEDVAFAESRIRAQTIAAEDVLHDIGAISMLG 359 NPT PYTVNT EHLDM MVCHHL+P IPED+AFAESRIR +TIAAED+LHDIGA S++ Sbjct: 301 NPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIIS 360 Query: 360 SDSQGMGRIHEVICRTWQLASKMKDQRGPLPEDRPGFGDNARIRRYIAKYTINAARTFGI 419 SDSQ MGR+ EV RTWQ A KMK QRG L E+ G DN R++RYIAKYTIN A G+ Sbjct: 361 SDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEE-TGDNDNFRVKRYIAKYTINPAIAHGL 419 Query: 420 ADHIGSLEDGKIADIVVWRPSFFGIKPELVIKSGFIAWGAMGDSAASLMTCEPMLLRPQW 479 + IGSLE GK AD+V+W P+FFG+KP++V+ G IA MGD AS+ T +P+ RP + Sbjct: 420 SHEIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMF 479 Query: 480 GAFGRAPAALSACFVHPLAIERGLGAELGLSKQLLPVKGTR-KLSKRDMLWNDNCPKVTV 538 GA+GR+ S FV +++ GL LG++K+L+ V+ TR + K M+ N P + V Sbjct: 480 GAYGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEV 539 Query: 539 DPETFDVFVDGELATCEPARELPLARRYML 568 DPET++V DGEL TCEPA LP+A+RY L Sbjct: 540 DPETYEVRADGELLTCEPATVLPMAQRYFL 569
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 24.8 bits (54), Expect = 0.022 Identities = 6/31 (19%), Positives = 12/31 (38%) Query: 8 ANARARRRRMEIFAFLFLTAVIMPTLAVATV 38 A A ++ + A + +AVA + Sbjct: 26 AAAERSKKLAWVVAGVAGALATAGVVAVAAL 56
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.2 bits (96), Expect = 9e-06 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 2/101 (1%) Query: 182 RREARLQQKLAEATEVVEELKREVDADPEASNRRIRAARERAAREHKQKVEAAQAALEEI 241 + E + A+ EV +E K V A+ + + + + + + K A E+ Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 242 KRKRQKLEE--KGGNGKKPKEPRASTTDPQARRMKMADAGF 280 K + +K +E K + PK+ ++ T PQA + D Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 29.9 bits (67), Expect = 0.018 Identities = 8/38 (21%), Positives = 12/38 (31%) Query: 79 YDKAISALTGAIAADPDNAGLYDRRGVAYWRKGQDDLA 116 YD AI + + D +KG+ A Sbjct: 86 YDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123
>PF06580#Sensor histidine kinase Length = 349 Score = 44.5 bits (105), Expect = 3e-07 Identities = 43/280 (15%), Positives = 79/280 (28%), Gaps = 54/280 (19%) Query: 67 ALAIGFYAIIVAVDITLIHLMHEAARHLRQERAVSERLYQNERVLFQELQHRVANNIQFI 126 A ++ V T I + V+ L ++F + ++ + Sbjct: 81 LPACVVIGMVWFVANTSI----WRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYF 136 Query: 127 SGLLMMQKRQAAADPSRAAAILSEAQTR--------------LETIS--------RVHRM 164 +QA D + A++ EAQ L I + M Sbjct: 137 GWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREM 196 Query: 165 LHDPS---RMNLEIGPYLQT-------ICNDVLQSSGAR-----DVACVVDFAPAELDLT 209 L S R +L Q + + LQ + + ++ A ++ + Sbjct: 197 LTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQV- 255 Query: 210 RLTALSLLVVELVTNAVKHAFGP-EQAGTIMVSLRPLDAARYGLTISDNGKGLSPGVEPG 268 +LV LV N +KH Q G I++ D L + + G + Sbjct: 256 ----PPMLVQTLVENGIKHGIAQLPQGGKILLKGT-KDNGTVTLEVENTGSLALKNTKES 310 Query: 269 KVDSLGLR-ICEGLAA---QMHGKLTTSSGSGTTVQLEFP 304 GL+ + E L + + P Sbjct: 311 T--GTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>PF05860#haemagglutination activity domain. Length = 117 Score = 64.4 bits (157), Expect = 3e-14 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 75 VTQTSAKAIVNWNSFSVGSNASVNFAQPNANAAILNRVTGNTSSTIAGKITGNG--QVYL 132 TQ + ++ FSV ++ + F P I++RVTG + S I G I N ++L Sbjct: 27 GTQAGSNLFHSFQEFSVPTSGTAFFNNPTNIQNIISRVTGGSVSNIDGLIRANATANLFL 86 Query: 133 VNPNGIAITPSGSVQVGGGFVASTLD 158 +NPNGI + + +GG FV ST + Sbjct: 87 INPNGIIFGQNARLDIGGSFVGSTAN 112
>SECA#SecA protein signature. Length = 901 Score = 34.5 bits (79), Expect = 9e-06 Identities = 11/19 (57%), Positives = 16/19 (84%) Query: 39 SEKLGRNDLCPCGSGRRFQ 57 K+GRND CPCGSG++++ Sbjct: 876 ERKVGRNDPCPCGSGKKYK 894
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.2 bits (68), Expect = 0.009 Identities = 24/139 (17%), Positives = 39/139 (28%), Gaps = 22/139 (15%) Query: 37 ELRAIRAQMANAIRSGGHSTAAAAIEESAQREVAEARALLETYRAQIEQCE----KLKVE 92 R+I ++ EE R + + T++ Q Q E K + E Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAE 215 Query: 93 LDLIHDAINRTKGEIA----------TLHAKSFNGE--------EMAKVNGELGAVVGGT 134 + INR + +L K + + + EL Sbjct: 216 RLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQL 275 Query: 135 EQATQQILEAAEAIDQAAS 153 EQ +IL A E Sbjct: 276 EQIESEILSAKEEYQLVTQ 294
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.4 bits (73), Expect = 0.007 Identities = 10/33 (30%), Positives = 14/33 (42%) Query: 399 LLTGPSGAGKSTLFRAIAGVWPFGSGAISVPGH 431 +L G G GKSTL + G+ F + Sbjct: 600 VLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG 632
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.5 bits (71), Expect = 8e-04 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 15/92 (16%) Query: 61 SETWNLCL----IAVRSDRQRRGYGAALIDLIV---RELAAQHQRVLIVETSGLPKFGGT 113 WN IAV D +++G G AL+ + +E L + + Sbjct: 83 RSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLM-LETQDINISAC--- 138 Query: 114 HAFYRRCGFTREACIRDFYRD---GDDKIVFW 142 FY + F A Y + ++ +FW Sbjct: 139 -HFYAKHHFIIGAVDTMLYSNFPTANEIAIFW 169
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.5 bits (84), Expect = 1e-05 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 48 DKVIEKMSQRD--VFVAASEASVLGTVSLATISPDAGRLHSMFVAPRHQGGGIGRRLVQH 105 D + + + F+ E + +G + + + + + VA ++ G+G L+ Sbjct: 54 DMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHK 113 Query: 106 LERHAASKGLSQLSL---SSSITARPFYAKLGYAL 137 A L L +I+A FYAK + + Sbjct: 114 AIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>INTIMIN#Intimin signature. Length = 939 Score = 38.5 bits (89), Expect = 6e-04 Identities = 70/386 (18%), Positives = 120/386 (31%), Gaps = 20/386 (5%) Query: 816 TSGGLQTIVSSAFTSSSLISGLWDQVTTDLTTISAGGALTETLTVTDGVSHALKTAQTNT 875 T Q I + L +WD D S GG + + + + A+ A Sbjct: 465 TERSTQKIQLIVKSKYGLDRIVWD----DSALRSQGGQIQHSGSQSAQDYQAILPAYVQG 520 Query: 876 SADRRTRTTTTTLGSTNLVKQVE-TVTIANSGTVRDQVVSFDQLGDVLGATVTTSTADGL 934 ++ T + N V T+T+ ++G V DQV D D A + A Sbjct: 521 GSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITY 580 Query: 935 VKTVQKDIQGQSAAAFASGGLAFDVTATDTTV---INADGSRTDTVNTTAQNGALLSQTS 991 TV+K+ G + A TA + N G T T+ + ++S + Sbjct: 581 TATVKKN--GVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKT 638 Query: 992 VASSANGLSTTTTVNPYATAHYATRTARTTTLNGDGSSTVASATYSYN--QVLIGSTQTV 1049 ++ + A A TT +G + + + T Sbjct: 639 AEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTF 698 Query: 1050 TAAGGLGTTTSQDLDGDGVTDLSTVDLVTINADGSRTETVTDYTGTTAGAVRDVTTAHTG 1109 T G + +++ D +G VT+ + V+ A V+ Sbjct: 699 TTTLGKLSNSTEKTDTNGYAK------VTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFT 752 Query: 1110 IIVAGAGLESITTRQSLGSVPS--YQVETVLPAANGSVTDTTDYFASPGGALLLRTIATT 1167 + G I G +P+ Q V A+G T A+P A + + Sbjct: 753 TLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQV 812 Query: 1168 SANGLVRTTATAVKGDTTTDFSTTDA 1193 + TT + + D T T Sbjct: 813 TLKEKGTTTISVISSDNQTATYTIAT 838
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 374 bits (961), Expect = e-130 Identities = 157/401 (39%), Positives = 239/401 (59%), Gaps = 19/401 (4%) Query: 5 ILTVNAGSSSIKFAAYEVGAGALRAVARGHVDDIGDDTIFAAGSADGPVERQPIDAARGT 64 IL +N GSSS+K+ E G + A G + IG + +A+G + I + Sbjct: 3 ILVINCGSSSLKYQLIESKDGNVLAK--GLAERIGINDSLLTHNANG----EKIKIKKDM 56 Query: 65 VDHGAALRLAIDWLRRHEEG-----CHVVAIGHRVVHGGPDHAEPVVIDTGTLQTLRRLI 119 DH A++L +D L + G + A+GHRVVHGG V+I L+ + I Sbjct: 57 KDHKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCI 116 Query: 120 PLAPLHQPHNLAGVEAALQAFPDAAQVACFDTAFHRQHPFVADAFALPRRLYDE-GVRRY 178 LAPLH P N+ G++A Q PD VA FDTAFH+ P A + +P Y + +R+Y Sbjct: 117 ELAPLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKY 176 Query: 179 GFHGLSYEYVSRRL-RSLAPDLASGRVIIAHLGNGASVCALRDGRSIASTMGFTALDGLP 237 GFHG S++YVS+R L + S ++I HLGNG+S+ A+++G+SI ++MGFT L+GL Sbjct: 177 GFHGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLA 236 Query: 238 MGTRCGQLDPGVVLYLLTEKGMSADEITHLLYHDSGLKGLSGLSNDMRELEASDA----P 293 MGTR G +DP ++ YL+ ++ +SA+E+ ++L SG+ G+SG+S+D R+LE + Sbjct: 237 MGTRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDK 296 Query: 294 EAREAIDYFVARVRREIAGLAATIGGVDAVVFAGGIGEHAWRVREQILADMGWLGIALDR 353 A+ A++ F RV++ I AA +GGVD +VF GIGE+ +RE IL + +LG LD+ Sbjct: 297 RAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDK 356 Query: 354 AAN--AGNAQTVSLSDSRVAVLVIPTDEDRMIAEHTAEILG 392 N G +S +DS+V V+V+PT+E+ MIA+ T +I+ Sbjct: 357 EKNKVRGEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIVE 397
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 55.8 bits (134), Expect = 2e-11 Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 26/262 (9%) Query: 24 KGLRG---LVVGVANESSIAFGCAAKLRAFGAEV-ALTYADERTRDFVAPLAAQIGASLL 79 KG+ G + G A I A L + GA + A+ Y E+ V+ L A+ + Sbjct: 4 KGIEGKIAFITGAAQ--GIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 80 LPLNVEQPGELDAVFARLRQDWGRLDFVVHSIAFAPKDDLHGRVIDCSADGFTRAMRISV 139 P +V +D + AR+ ++ G +D +V+ +H S + + ++ Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIH----SLSDEEWEATFSVNS 117 Query: 140 YSFLELSRAAEQLMT--QGGTLLTMSYYGADKVVNNYNIMGLAKASLEASVRYLAAELGG 197 SR+ + M + G+++T+ A + +KA+ + L EL Sbjct: 118 TGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 198 KNIRVYAVSPGPLKTR-----------AASGIAHFDELVEAAVNRSPGRRLVDIAEIGRV 246 NIR VSPG +T A I E + + P ++L ++I Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGI---PLKKLAKPSDIADA 234 Query: 247 VAFLVGGGASGMTGDTIYVDAG 268 V FLV G A +T + VD G Sbjct: 235 VLFLVSGQAGHITMHNLCVDGG 256
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.8 bits (82), Expect = 4e-04 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 19/151 (12%) Query: 107 ERKQTILREAATLAETKWFGDLEADKERVLRELRAGREAK--LSRDWAK--------EAS 156 E K+ + E L E EA ++ + R+L A REAK L + K EAS Sbjct: 323 EAKKQLEAEHQKLEEQN--KISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEAS 380 Query: 157 QPD--ADAAKRKEALTTAEREIGQADKSRLQALRKAEQEIAAAQQAREKAAREAQWAIES 214 + D +EA E+ + +A S+L AL K +E+ +++ EK E Q +E+ Sbjct: 381 RQSLRRDLDASREAKKQVEKALEEA-NSKLAALEKLNKELEESKKLTEKEKAELQAKLEA 439 Query: 215 AARD-RESQAREAAEQARVLKLSRPIPLAPQ 244 A+ +E A++A E A KL Q Sbjct: 440 EAKALKEKLAKQAEELA---KLRAGKASDSQ 467 Score = 28.9 bits (64), Expect = 0.050 Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 13/148 (8%) Query: 84 LGRFAREATRTFAVKAYAGVTEHERKQTILREAATLAETKWFGDLEADKERVLRELRAGR 143 L + A + T K + E A L L A+++ + R+L A R Sbjct: 265 LEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV--LNANRQSLRRDLDASR 322 Query: 144 EAK--LSRDWAKEASQPDADAAKRKEALTTAEREIGQADKSRLQA-LRKAEQEIAAAQQA 200 EAK L + K Q A R+ + + + K +L+A +K E++ ++ + Sbjct: 323 EAKKQLEAEHQKLEEQNKISEASRQS--LRRDLDASREAKKQLEAEHQKLEEQNKISEAS 380 Query: 201 RE------KAAREAQWAIESAARDRESQ 222 R+ A+REA+ +E A + S+ Sbjct: 381 RQSLRRDLDASREAKKQVEKALEEANSK 408
>ENTEROTOXINA#Heat-labile enterotoxin A chain signature. Length = 258 Score = 29.2 bits (65), Expect = 0.022 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Query: 229 NITLISMILSIALVGKGNDDKFF-SDPRSPDVPKRS 263 NIT I IL +A N D+ + +D R PD KRS Sbjct: 3 NITFIFFIL-LASPLYANGDRLYRADSRPPDEIKRS 37
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 27.8 bits (62), Expect = 0.035 Identities = 6/31 (19%), Positives = 12/31 (38%) Query: 34 NEYLQKLTAEFAEKTGRAPVALDKDGLARLR 64 N + + L +F+ P+ D G + Sbjct: 3 NLFYKTLLDDFSRSLEMQPLVFDDHGTCNMI 33
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 24.0 bits (52), Expect = 0.030 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 2 IFLLVLVIIAVVGGALVHADNWLDGLAMLIIVPLGIWGFLALLN 45 + + V++ + AL ++W ++++++VPLGI G L Sbjct: 875 LVAISFVVVFLCLAALY--ESWSIPVSVMLVVPLGIVGVLLAAT 916
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 2e-19 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 2 SRVLIADDEDSMRTLVARAIAMDGHETVTAQDGAEALDILTRENGAFDLLLTDIQMPIMD 61 + +L+ADD+ ++RT++ +A++ G++ + A + G DL++TD+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPDEN 61 Query: 62 GIALALSAARDFPDLTILLMTGFAHQRERASNLNAIAHDVITKPFSVADIRTAVADALA 120 L + PDL +L+M+ A+D + KPF + ++ + ALA Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.2 bits (65), Expect = 0.005 Identities = 11/62 (17%), Positives = 14/62 (22%) Query: 53 AAPAAAPAAPAAPAPAPAAEAKPAKETKAAAKEAAPAAEPSGPAVFPNAVDPKYAKEKPG 112 P P P P P EA E + P + + P Sbjct: 70 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPF 129 Query: 113 EA 114 E Sbjct: 130 EN 131
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.8 bits (85), Expect = 1e-04 Identities = 72/379 (18%), Positives = 123/379 (32%), Gaps = 47/379 (12%) Query: 28 LPVFLKPMAAATGWSVAGISSALTIGFLAMACTSMAWGTLSDRIGPRPVLLIGSTLLALS 87 L V L +A A + T L + + +G LSD++G + +LL G + Sbjct: 33 LNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFG 92 Query: 88 LLLASLTSSLLMFQLLFGLIAGVATAAIFPPVMATVTGWFDTHR-----SLAVSLVSAGM 142 ++ + S ++ I G AA VM V + L S+V+ G Sbjct: 93 SVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGE 152 Query: 143 GVAPMTMSPLAAWLVSSYDWRTAMQCIAAVVAAIMIPTSLLVGRPPLSAPGDVVASGADA 202 GV P +A ++ SY M I V + + + + G ++ S Sbjct: 153 GVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMS---V 209 Query: 203 GPAEMTRSAALRSPQFLILLATNFFCCATH--------------------SGPIIHTVSY 242 G S FLI+ +F H G + + + Sbjct: 210 GIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIF 269 Query: 243 AVTCGIPLMAAVTIYSVEGL--AGLGGRIAF-------------GLLGDRFGAKRVLVLG 287 G M + V L A +G I F G+L DR G VL +G Sbjct: 270 GTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIG 329 Query: 288 LLAQAFGALAYVAVRDLAAFY---AVAATFGFLYAGTMPLYASIARDNFPQGIMGTVIGG 344 + + L + + +++ + G + T + ++I + Q G + Sbjct: 330 VTFLSVSFLTASFLLETTSWFMTIIIVFVLGG-LSFTKTVISTIVSSSLKQQEAGAGMSL 388 Query: 345 TAMAGSLGMATGPLAGGLI 363 L TG G + Sbjct: 389 LNFTSFLSEGTGIAIVGGL 407 Score = 32.9 bits (75), Expect = 0.002 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 1/103 (0%) Query: 266 GGRIAFGLLGDRFGAKRVLVLGLLAQAFGALAYVAVRDLAAFYAVAATFGFLYAGTMPLY 325 G +G L D+ G KR+L+ G++ FG++ + +A A P Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPAL 123 Query: 326 ASIARDNF-PQGIMGTVIGGTAMAGSLGMATGPLAGGLIYDSF 367 + + P+ G G ++G GP GG+I Sbjct: 124 VMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI 166
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.8 bits (134), Expect = 9e-12 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 3/136 (2%) Query: 28 KQALIAAATELLERDGAEALSFRATARAAGVSQSAPYNHFAGKEDLLATVAEAGFLALTT 87 +Q ++ A L + G + S A+AAGV++ A Y HF K DL + + E + Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 88 SQEAAQARWPAGEDQLTGLGLDYIGFAAARPQLYRLMFGVGLPDWHAYPE---VASAKRA 144 + QA++P + L ++ + + RL+ + E V A+R Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 145 TFGPLRQALTSFLPAA 160 + L Sbjct: 133 LCLESYDRIEQTLKHC 148
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 115 bits (288), Expect = 2e-32 Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 2/252 (0%) Query: 53 GKTVLVTGATSGIGRAAAIAFARQGAAVVFCGRREALGREVEAEIKAEGGRARFIRADVR 112 GK +TGA GIG A A A QGA + +V + +KAE A ADVR Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 113 VEAEMRDLVVQAIATFGGLDIALNNAGITIEKPLHELDAADWADVVDTNLRGVFFAMKYE 172 A + ++ + G +DI +N AG+ +H L +W N GVF A + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 173 IAEMLPRGGGTILVTSSSVVHRTGPRRSAYTATKAGLVGMVRSAALDYADNNIRINAILP 232 M+ R G+I+ S+ +AY ++KA V + L+ A+ NIR N + P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 233 GTTDTALVRRVAGTEGMPDAVWQIAATQWARSKMPGFKRMASPEEIAEFAVAMASPELTY 292 G+T+T + + E + V + + + ++ +P K++A P +IA+ + + S + + Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETF-KTGIP-LKKLAKPSDIADAVLFLVSGQAGH 245 Query: 293 MTGSALASDGGT 304 +T L DGG Sbjct: 246 ITMHNLCVDGGA 257
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.1 bits (88), Expect = 1e-05 Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 21/182 (11%) Query: 14 EAARLERSVPDAPSPSPTVTSYLAATQAAATVPVKVAPAAASAATASPASASASQAPAAM 73 E + ++V +P QA V + +P A P+ Sbjct: 984 EVEKRNQTVDTTNITTPN------NIQADVP-SVPSNNEEIARVDEAPVPPPAPATPSET 1036 Query: 74 TTTAAASPTSIMPQPGDAQAKVQDAAQDTTQDKSQDKVA-----------DKAPDPEQTS 122 T T A + + + QDA + T Q++ K A + A +T Sbjct: 1037 TETVAENSKQ---ESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 123 RAAERRRVAEQRRAERHRQYVERRRQRREQDLRAVEQAVREDSTPRAYAAQPADMPGPRF 182 + + VE + + + + +E S A+PA P Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 183 SL 184 ++ Sbjct: 1154 NI 1155
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.8 bits (67), Expect = 0.003 Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 3/44 (6%) Query: 66 DIVLAGSAGDGFIRHMKARGAD---VLLTGESDAETALARLIAG 106 D+V+ + +K D ++++ ++ TA+ G Sbjct: 54 DVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKG 97
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.2 bits (65), Expect = 0.005 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 8/122 (6%) Query: 14 AAARRLEVSASNVANARSTGALPDTNGNVPAGAPKAYDPLELVQSDVAGGGTQTTIAKAG 73 A A + S+ N ++ L +N GA D + SD+ G +T K Sbjct: 433 AMASEEDAGDSDNRNGQALLDLQ-SNSKTVGGAKSFNDAYASLVSDI---GNKTATLKTS 488 Query: 74 NGTSASYDPTAPFANKEGLVAAPRVDLAQEMISQLVAKYSFAANARVLKASDEMSRIVID 133 + T + + V+L +E + + + ANA+VL+ ++ + +I+ Sbjct: 489 SATQGNVVTQL----SNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Query: 134 MK 135 ++ Sbjct: 545 IR 546
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 28.6 bits (64), Expect = 0.043 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 3/132 (2%) Query: 58 MSMGLCSPLLARPFVKQGGRRVMIAGTVLAAPGYALLSVAQGPLTYYAAWLLLGIAGSAT 117 + C+P+L + G R V++ AA YA+++ A Y ++ GI G+ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG 113 Query: 118 LSTASYIVLNEIAGRRAGRAIGALMLVTGLSSSIFWPVTSALSAHIGWRSTCLVYAGLLL 177 +YI RA R G + G + PV L + A L Sbjct: 114 AVAGAYIADITDGDERA-RHFGFMSACFG-FGMVAGPVLGGLMGGFSPHAP-FFAAAALN 170 Query: 178 LVSLPLFVFLLP 189 ++ FLLP Sbjct: 171 GLNFLTGCFLLP 182
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 96.3 bits (239), Expect = 4e-25 Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 13/205 (6%) Query: 72 ALTGKVAVVTGAARGIGRSIAVEMAANGADVVALDIAGPVSTASNAVPATPEDLAETVRQ 131 + GK+A +TGAA+GIG ++A +A+ GA + A+D PE L + V Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVD-------------YNPEKLEKVVSS 51 Query: 132 IMAYGRRGESIRADIRDIAALRAAADHVEQTYGKIDIVVADAAIQRWKPLLEMEDADWRD 191 + A R E+ AD+RD AA+ +E+ G IDI+V A + R + + D +W Sbjct: 52 LKAEARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEA 111 Query: 192 VIDNNLNGTANTIRAFAPKMVARKSGRIIVLSSMQGKHGTRDAASYSASKWGILGLMKSA 251 N G N R+ + M+ R+SG I+ + S A+Y++SK + K Sbjct: 112 TFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCL 171 Query: 252 ALELGQHNITVNALIPGLVDTALTR 276 LEL ++NI N + PG +T + Sbjct: 172 GLELAEYNIRCNIVSPGSTETDMQW 196
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 79.4 bits (195), Expect = 4e-16 Identities = 239/1059 (22%), Positives = 398/1059 (37%), Gaps = 53/1059 (5%) Query: 3903 TNAGSGLTLVVNGDGNTQTAGDGATMTITGANETTSAGDKSTITQKGANSTTIAGKSAKV 3962 T +G+ + ++ G G+T+TAGD +T+ I G T +AG ST+ ++ T +S+ Sbjct: 167 TLSGTHQSQLIAGYGSTETAGDSSTL-IAGYGSTGTAGADSTLVAGYGSTQTAGEESS-- 223 Query: 3963 TVTGDQGKTSVGNGSSATVAGLSEVVTGGMQSVLAVSGDSATVTAGDFASVSVSGNNGSV 4022 G T G S AG T G S L ++G +T TAG+ S++ GS Sbjct: 224 -QMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSL-IAGYGSTQTAGE--DSSLTAGYGST 279 Query: 4023 TVGVGASAIVTGNHQSITAGANSTVVAVGSLDTVTATDLGVSVSLSGTGSGQSTANLNGG 4082 S + G + TAGA+S+++A + + T + Q ++L G Sbjct: 280 QTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAG 339 Query: 4083 SVALSNGTAVINGNGDTITQNANSNALIVGTSNAVDVLGAGNTTAIGGGSITVEAAASTV 4142 S GTA GD + A + ++ G G+T GS + A + Sbjct: 340 YG--STGTA-----GDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGS-DLTAGYGST 391 Query: 4143 ATGNNDAAIVKSNGTLTLTGTGNSIDIAGSAASVTASNASVRVENGAGGTLNGASDTIAV 4202 T D++++ G+ T T S AG ++ TA S + G G T D+ + Sbjct: 392 GTAGADSSLIAGYGS-TQTAGEESTQTAGYGSTQTAQKGS-DLTAGYGSTGTAGDDSSLI 449 Query: 4203 GSNASLNLVGSNSSVTVSGSGTSIGVTGTTDSIAISNGTVALGAASSITLSGDGNKISTS 4262 S G +SS+T T G+ + G+ + S ++G G+ + Sbjct: 450 AGYGSTQTAGEDSSLTAGYGSTQTAQKGS--DLTAGYGSTSTAGYESSLIAGYGSTQTAG 507 Query: 4263 GRDTLIASGKNDSVAVSGTGNVIAISNATIVLADGADAVIVGSNDTIIAGNNASLTLIGN 4322 TL A + A + + + + + A+ ++I G T A N+ LT Sbjct: 508 YGSTLTAGYGSTQTAQNESDLITGYGSTSTAGAN--SSLIAGYGSTQTASYNSVLTAGYG 565 Query: 4323 NDGLTVNGSNATIDLAGNGDSITMSSGSLTLEPGTIAAVTGSNNNIQQGKGLTQGDNAII 4382 + GS+ T AG G + T S S + ++++ G G TQ Sbjct: 566 STQTAREGSDLT---AGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQS 622 Query: 4383 QATGSNGIFVAGNNAHADVTGTKNVVVVGDNSSANVSGASNTIAAGNQAVVTLSGNGNSV 4442 T G + + G + G NS +G +T A + +T S Sbjct: 623 VLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILT-AGYGSTQTAQEGSDLTAGYGSTST 681 Query: 4443 TVGDSANVNITGASNMLAAGASLTVDEGGTQNTVTAT--TAAHGVLSGTNDQLTLGANAS 4500 DS+ + G++ + LT G TQ + T+ +G S +L A Sbjct: 682 AGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYG 741 Query: 4501 LQVTGSNDRFATGASSSVVVTGSNNQGTVGDASTVAVNGTLDGITAGNSATVTVGGSQDT 4560 T S T S + T G ST + G + AG +T T G Sbjct: 742 STQTASYHSSLTAGYGSTQTAREQSVLTTGYGST-STAGADSSLIAGYGSTQT-AGYHSI 799 Query: 4561 INTGAGAWLTVNGNTDTVYTGDHSSVWLNGAHDTLGSSSAAAAWISVNIAGSYDSATVGA 4620 + G G+ T +D +S + G S A + + Y S Sbjct: 800 LTAGYGSTQTAQERSDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQ 859 Query: 4621 NATATVSGTNALVTAGATSTLTLGGSANDASVGDSAKITLAGSGNIVSGGKTSSASVTGS 4680 + +G + TAG S+L G + + +S GS + +S TG Sbjct: 860 ENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGS---TQTAQENSDLTTGY 916 Query: 4681 SDKLTLGSAANVTVQGNGNTSTVGDGSTVVVSGSQDTTTTGASAALTVSGSADTSYVGNG 4740 T G +++ G G+T T ST++ T S+ GS + + Sbjct: 917 GSTSTAGYESSLIA-GYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSS 975 Query: 4741 TSTLASSVTISGSGNTTTAG-------TYAAVQVIGDSNTTTAGASSTLV-------VNG 4786 S +G +T TAG +++ G +T TAGA S+L+ +G Sbjct: 976 LIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSG 1035 Query: 4787 AKDNVTAGQTSTMTINGNNATVTAGYGSSATLNGSNDQISMDYSAWLQVNGNYDTSTVGT 4846 + +TAG ST+ I+G + +TAGYGSS +G ++ Y + ++ +S + Sbjct: 1036 IRSFLTAGYGSTL-ISGLRSVLTAGYGSSLI-SGRRSSLTAGYGS--NQIASHRSSLIAG 1091 Query: 4847 NSTVIVAGAHDGTTTGSGSNVT--FATTATAGQASVSDNSTVTANGSGNTINGGSGDVLK 4904 + + G G GS+ T + +T +G SV +G +GD K Sbjct: 1092 PESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTAGDRSK 1151 Query: 4905 LVGNSNGATVGASASVTVNGNSNSVTAAAKAWMLVTGNS 4943 L+ +N S GN + A ++ + NS Sbjct: 1152 LLAGNNSYLTAGDRSKLTAGNDCILMAGDRSKLTAGINS 1190 Score = 75.9 bits (186), Expect = 4e-15 Identities = 229/1037 (22%), Positives = 382/1037 (36%), Gaps = 67/1037 (6%) Query: 4159 TLTGTGNSIDIAGSAASVTASNASVRVENGAGGTLNGASDTIAVGSNASLNLVGSNSSVT 4218 TL+GT S IAG ++ TA ++S + G G T +D+ V S G SS Sbjct: 167 TLSGTHQSQLIAGYGSTETAGDSSTLIA-GYGSTGTAGADSTLVAGYGSTQTAGEESSQM 225 Query: 4219 VSGSGTSIGVTGTTDSIAISNGTVALGAASSITLSGDGNKISTSGRDTLIASGKNDSVAV 4278 T G+ G+ + G+ S ++G G+ + +L A S Sbjct: 226 AGYGSTQTGMKGS--DLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAG--YGSTQT 281 Query: 4279 SGTGNVIAISNATIVLADGADAVIVGSNDTIIAGNNASLTLIGNNDGLTVNGSNATIDLA 4338 + G+ + + A ++I G T AG ++ T + GS+ T A Sbjct: 282 AQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLT---A 338 Query: 4339 GNGDSITMSSGSLTLEPGTIAAVTGSNNNIQQGKGLTQGDNAIIQATGSNGIFVAGNNAH 4398 G G + T S + G ++++ G G TQ T G Sbjct: 339 GYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADS 398 Query: 4399 ADVTGTKNVVVVGDNSSANVSGASNTIAAGNQAVVTLSGNGNSVTVG-DSANVNITGASN 4457 + + G + G+ S+ S A + +G G++ T G DS+ + G++ Sbjct: 399 SLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLT--AGYGSTGTAGDDSSLIAGYGSTQ 456 Query: 4458 MLAAGASLTVDEGGTQNTVTATTAAHGVLSGTNDQLTLGANASLQVTGSNDRFATGASSS 4517 +SLT G TQ + + +G T G +SL + + A S+ Sbjct: 457 TAGEDSSLTAGYGSTQTAQKGSD----LTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTL 512 Query: 4518 VVVTGSNNQGTVGDASTVAVNGTLDGITAGNSATVTVGGSQDTINTGAGAWLTVNGNTDT 4577 GS T TAG ++++ G + G+T T Sbjct: 513 TAGYGSTQTAQNESDLITGYGSTS---TAGANSSLIAGYGSTQTASYNSVLTAGYGSTQT 569 Query: 4578 VYTGDHSSVWLNGAHDTLGSSSAAAAWISVNIAGSYDSATVGANATAT-------VSGTN 4630 G + SS A + S A + S T G +T T +G Sbjct: 570 AREGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYG 629 Query: 4631 ALVTAGATSTLTLGGSANDASVGDSAKITLAGSGNIVSGGKTSSASVTGSSDKLTLGSAA 4690 + TAGA S+L G + + +S GS G S G T G+ + Sbjct: 630 STSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEG---SDLTAGYGSTSTAGADS 686 Query: 4691 NVTVQGNGNTSTVGDGSTVVVSGSQDTTTTGASAALTVSGSADTSYVGNGTSTLASSVTI 4750 ++ + G G+T T G S + T S + GS T+ + S Sbjct: 687 SL-IAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQT 745 Query: 4751 SGSGNTTTAGTYAAVQVIGDSNTTTAGASSTLVVNGAKDNVTAGQTSTMTINGNNATVTA 4810 + ++ TAG Y + Q + + T G ST GA ++ AG ST T G ++ +TA Sbjct: 746 ASYHSSLTAG-YGSTQTAREQSVLTTGYGSTSTA-GADSSLIAGYGSTQT-AGYHSILTA 802 Query: 4811 GYGSSATLNGSNDQISMDYSAWLQVNGNYDTSTVGTNSTVIVAGAHDGTTTGSGSNVTF- 4869 GYGS+ T +D + S D+S + + AG + T G GS T Sbjct: 803 GYGSTQTAQERSDLTTGYGST---STAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQ 859 Query: 4870 ---ATTATAGQASVSDNSTVTANGSGNTINGGSGDVLKLVGNSNGATVGASASVTVNGNS 4926 T G S + + G G+T G +L G+T A + + Sbjct: 860 ENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILT---AGYGSTQTAQENSDLTTGY 916 Query: 4927 NSVTAAAKAWMLVTGNSNAESVGTSSSVTVNGTGNQTWLGDSSAAAINGSSNTTSYNAA- 4985 S + A L+ G + ++ S++ +QT SS A GS++ Y+++ Sbjct: 917 GSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSL 976 Query: 4986 --------GSNENISVVGNSNATYAGNGGNIYVGGTGNSTSLGQTQLLQVVGSSNTTTAG 5037 + ++ +T + G G++ + G L + G ++ T+G Sbjct: 977 IAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSL-IAGYGSSLTSG 1035 Query: 5038 PSA-------QAIISGNGNTTTIGGGSNVQITGQVNSTTIGDGSIITITGNSNNTTTGAY 5090 + +ISG + T G GS++ I+G+ +S T G GS + S+ Sbjct: 1036 IRSFLTAGYGSTLISGLRSVLTAGYGSSL-ISGRRSSLTAGYGSNQIASHRSSLIAGPES 1094 Query: 5091 DQIAIN-----SGNNTTHTGYGTNATINGNGNVTTVGNNSGLTVNGASNNSAAGTSSTEV 5145 QI N +G ++ T + I+G +V G L S +A S ++ Sbjct: 1095 TQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTAGDRS--KL 1152 Query: 5146 INGIGNYTTSGDFSSMT 5162 + G +Y T+GD S +T Sbjct: 1153 LAGNNSYLTAGDRSKLT 1169 Score = 75.9 bits (186), Expect = 4e-15 Identities = 213/865 (24%), Positives = 325/865 (37%), Gaps = 66/865 (7%) Query: 4402 TGTKNVVVVGDNSSANVSGASNTIAAGNQAVVTLSGNGNSVTVGDSANVNITGASNMLAA 4461 T + G + S ++G +T AG+ + + DS V G++ Sbjct: 161 IATYGSTLSGTHQSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGE 220 Query: 4462 GASLTVDEGGTQNTVTATTAAHG---VLSGTNDQLTLGANASLQVTGSNDRFATGASS-- 4516 +S G TQ + + G + +D + S Q G + G S Sbjct: 221 ESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQ 280 Query: 4517 -----SVVVTGSNNQGTVGDASTVAVNGTLDGITAGNSATVTVG-GSQDTINTG----AG 4566 S + G + GT G S++ + G TAG +T T G GS T G AG Sbjct: 281 TAQKGSDLTAGYGSTGTAGADSSL-IAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAG 339 Query: 4567 AWLTVNGNTDTVYTGDHSSVWLNGAHDTL--GSSSAAAAWISVNIAGSYDSATVGANATA 4624 T D+ + S G +L G S A ++ Y S ++ Sbjct: 340 YGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSS 399 Query: 4625 TVSGTNALVTAGATSTLTLG-GSANDASVGDSAKITLAGSGNIVSGGKTS-------SAS 4676 ++G + TAG ST T G GS A G AG G+ + G S S Sbjct: 400 LIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLT---AGYGSTGTAGDDSSLIAGYGSTQ 456 Query: 4677 VTGSSDKLTLGSAANVTVQ-------GNGNTSTVGDGSTVVVSGSQDTTTTGASAALTVS 4729 G LT G + T Q G G+TST G S+++ T S Sbjct: 457 TAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGY 516 Query: 4730 GSADTSYVGNGTSTLASSVTISGSGNTTTAGTYAAVQVIGDSNTTTAGASSTLVVNGAKD 4789 GS T+ + T S + +G+ ++ AG Y + Q ++ TAG ST D Sbjct: 517 GSTQTAQNESDLITGYGSTSTAGANSSLIAG-YGSTQTASYNSVLTAGYGSTQTAREGSD 575 Query: 4790 NVTAGQTSTMTINGNNATVTAGYGSSATLNGSNDQISMDYSAWLQVNGNYDTSTVGTNST 4849 +TAG ST T G+++++ AGYGS+ T + + + S + T+ G+ ST Sbjct: 576 -LTAGYGSTGTA-GSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTST 633 Query: 4850 VIVAGAHDGTTTGSGSNVTFAT----TATAGQASVSDNSTVTANGSGNTINGGSGDVLKL 4905 AGA G GS T TA G + + G G+T G+ L Sbjct: 634 ---AGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIA 690 Query: 4906 VGNSNGATVGASASVTVNGNSNSVTAAAKAWMLVTGNSNAESVGTSSSVTVNGTGNQTWL 4965 G+T A + + S A + L +G + + G SS+ QT Sbjct: 691 ---GYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQTAS 747 Query: 4966 GDSSAAAINGSSNTTSYNA---------AGSNENISVVGNSNATYAGNGGNIYVGGTGNS 5016 SS A GS+ T + + + + S++ +T +I G G S Sbjct: 748 YHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHSILTAGYG-S 806 Query: 5017 TSLGQTQLLQVVGSSNTTTAGPSAQAIISGNGNTTTIGGGSNVQITGQVNSTTIGDGSII 5076 T Q + G +T+TAG + ++I+G G+T T G S + T + + Sbjct: 807 TQTAQERSDLTTGYGSTSTAGADS-SLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLT 865 Query: 5077 TITGNSNNTTTGAYDQIAINSGNNTTHTGYGTNATINGNGNVTTVGNNSGLTVNGASNNS 5136 T G+ T+T YD I +T GY + T G G+ T NS LT S ++ Sbjct: 866 TGYGS---TSTAGYDSSLIAGYGSTQTAGYNSILTA-GYGSTQTAQENSDLTTGYGSTST 921 Query: 5137 AAGTSSTEVINGIGNYTTSGDFSSMTLNGSSNTGVTGNSSNVYVYGSGDAGHAGSSSNLW 5196 A SS +I G G+ T+ S++ S+ SS YGS SS Sbjct: 922 AGYESS--LIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAG 979 Query: 5197 LYGSNNAGYIGNSSVMYLGSATASY 5221 + AGY + Y + TA + Sbjct: 980 YGSTQTAGYQSTLTAGYGSTQTAEH 1004 Score = 70.2 bits (171), Expect = 2e-13 Identities = 243/1066 (22%), Positives = 402/1066 (37%), Gaps = 74/1066 (6%) Query: 3781 NSALTAGYGFSTTIEGAGDSVTASIQAHVVATANSEVVSVGASSNVFVTGDAGSITAG-S 3839 S L AGYG + E AGDS T TA ++ V + G+ S AG Sbjct: 173 QSQLIAGYG---STETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYG 229 Query: 3840 SSQISLNGSN------ATILAKDSEQVTITGNNDQAKIGDQSTITINGSSDTTTAGALAV 3893 S+Q + GS+ +T A D + + Q D S GS+ T G+ Sbjct: 230 STQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDL- 288 Query: 3894 VNVTGSGDITNAGSGLTLVVNGDGNTQTAGDGATMTITGANETTSAGDKSTIT------- 3946 G G AG+ +L+ G G+TQTAG+ +T T G T +A S +T Sbjct: 289 --TAGYGSTGTAGADSSLIA-GYGSTQTAGEESTQT-AGYGSTQTAQKGSDLTAGYGSTG 344 Query: 3947 QKGANSTTIAGKSAKVTVTGDQ------GKTSVGNGSSATVAGLSEVVTGGMQSVLAVSG 4000 G +S+ IAG + T D G T S AG T G S L ++G Sbjct: 345 TAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSL-IAG 403 Query: 4001 DSATVTAGDFASVSVSGNNGSVTVGVGASAIVTGNHQSITAGANSTVVAVGSLDTVTATD 4060 +T TAG+ + + GS S + G + TAG +S+++A D Sbjct: 404 YGSTQTAGE--ESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGED 461 Query: 4061 LGVSVSLSGTGSGQSTANLNGGSVALSNGTAVINGNGDTITQNANSNALIVGTSNAVDVL 4120 ++ T + Q ++L G + T A + ++ + Sbjct: 462 SSLTAGYGSTQTAQKGSDLTAGYGS---------------TSTAGYESSLIAGYGSTQTA 506 Query: 4121 GAGNTTAIGGGSITVEAAASTVATGNNDAAIVKSNGTL------TLTGTGNSIDIAGSAA 4174 G G+T G GS S + TG + +N +L T T + NS+ AG + Sbjct: 507 GYGSTLTAGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGS 566 Query: 4175 SVTASNASVRVENGAGGTLNGASDTIAVGSNASLNLVGSNSSVTVSGSGTSIGVTGTTDS 4234 + TA S + G G T SD+ + S +SS+T T + Sbjct: 567 TQTAREGS-DLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSV-- 623 Query: 4235 IAISNGTVALGAASSITLSGDGNKISTSGRDTLIASGKNDSVAVSGTGNVIAISNATIVL 4294 + G+ + A S ++G G+ T+G ++++ +G S + G+ + + Sbjct: 624 LTTGYGSTSTAGADSSLIAGYGST-QTAGYNSILTAGYG-STQTAQEGSDLTAGYGSTST 681 Query: 4295 ADGADAVIVGSNDTIIAGNNASLTLIGNNDGLTVNGSNATIDLAGNGDSITMSSGSLTLE 4354 A ++I G T AG N+ LT + GS+ T +G G + T + S + Sbjct: 682 AGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLT---SGYGSTSTAGADSSLIA 738 Query: 4355 PGTIAAVTGSNNNIQQGKGLTQGDNAIIQATGSNGIFVAGNNAHADVTGTKNVVVVGDNS 4414 ++++ G G TQ T G + + G + G +S Sbjct: 739 GYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYHS 798 Query: 4415 SANVSGASNTIAAGNQAVVTLSGNGNSVTVGDSANVNITGASNMLAAGASLTVDEGGTQN 4474 +G +T A ++ +T S DS+ + G++ + LT G TQ Sbjct: 799 ILT-AGYGSTQTAQERSDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQT 857 Query: 4475 TVTATTAAHGVLSGTN---DQLTLGANASLQVTGSNDRFATGASSSVVVTGSNNQGTVGD 4531 + G S + D + S Q G N G S+ T N Sbjct: 858 AQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGST--QTAQENSDLTTG 915 Query: 4532 ASTVAVNGTLDGITAGNSATVTVGGSQDTINTGAGAWLTVNGNTDTVYTGDHSSVWLNGA 4591 + + G + AG +T T + T+ G G+ T + +S+ + Sbjct: 916 YGSTSTAGYESSLIAGYGSTQT-ASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDS 974 Query: 4592 HDTLGSSSAAAAWISVNIAGSYDSATVGANATATVSGTNALVTAGATSTLTLGGSANDAS 4651 G S A + Y S +++ +G + TAGA S+L G ++ S Sbjct: 975 SLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTS 1034 Query: 4652 VGDSAKITLAGSGNIVSGGKTSSASVTGSSDKLTLGSAANVTVQGNGNTSTVGDGSTVVV 4711 G + +T ++SG ++ + GSS L G +++T G G+ S+++ Sbjct: 1035 -GIRSFLTAGYGSTLISGLRSVLTAGYGSS--LISGRRSSLTA-GYGSNQIASHRSSLIA 1090 Query: 4712 SGSQDTTTTGASAALTVSGSADTSYVGNGTSTLASSVTISGSGNTTTAGTYAAVQVIGDS 4771 T S + GS+ T+ + + A SV ++G AG + Q GD Sbjct: 1091 GPESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGA-DSTQTAGDR 1149 Query: 4772 NTTTAGASSTLVVNGAKDNVTAGQTSTMTINGNNATVTAGYGSSAT 4817 + AG +S L G + +TAG + + G+ + +TAG S T Sbjct: 1150 SKLLAGNNSYLTA-GDRSKLTAGNDCIL-MAGDRSKLTAGINSILT 1193 Score = 64.8 bits (157), Expect = 9e-12 Identities = 154/630 (24%), Positives = 247/630 (39%), Gaps = 27/630 (4%) Query: 4595 LGSSSAAAAWISVNIAGSYDSATVGANATAT-VSGTNALVTAGATSTLTLGGSANDASVG 4653 +G+ ++A +I + A + A + V+ + T + + S Sbjct: 95 VGTKTSAMQFILHHRADYVACTEMQAGPGSPDVTSEVKVGNRSLPVTDDIDATIESGSTQ 154 Query: 4654 DSAKITLAGSGNIVSGGKTSSASVTGSSDKLTLGSAANVTVQGNGNTSTVGDGSTVVVSG 4713 + I +A G+ +SG S + G T G ++ + + G G+T T G ST+V Sbjct: 155 PTQTIEIATYGSTLSGTHQSQL-IAGYGSTETAGDSSTL-IAGYGSTGTAGADSTLVAGY 212 Query: 4714 SQDTTTTGASAALTVSGSADTSYVGNGTSTLASSVTISGSGNTTTAGTYAAVQVIGDSNT 4773 T S+ + GS T G+ + S +G ++ AG Y + Q G+ ++ Sbjct: 213 GSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAG-YGSTQTAGEDSS 271 Query: 4774 TTAGASSTLVVNGAKDNVTAGQTSTMTINGNNATVTAGYGSSATLNGSNDQISMDYSAWL 4833 TAG ST ++TAG ST T G ++++ AGYGS+ T + Q + S Sbjct: 272 LTAGYGSTQTA-QKGSDLTAGYGSTGTA-GADSSLIAGYGSTQTAGEESTQTAGYGSTQT 329 Query: 4834 QVNGNYDTSTVGTNSTVIVAGAHDGTTTGSGSNVTFA--TTATAGQASVSDNSTVTANGS 4891 G+ T+ G+ T AG G GS T ++ TAG S + + Sbjct: 330 AQKGSDLTAGYGSTGT---AGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTA 386 Query: 4892 GNTINGGSGDVLKLVGNSNGATVGASASVTVNGNSNSVTAAAKAWMLVTGNSNAESVGTS 4951 G G +G L+ G+T A T S A K L G + + G Sbjct: 387 GYGSTGTAGADSSLIAGY-GSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDD 445 Query: 4952 SSVTVNGTGNQTWLGDSSAAAINGSSNTTSYNAAGSNENISVVGNSNATYAGNGGNIYVG 5011 SS+ QT DSS A GS+ T + + G + + AG ++ G Sbjct: 446 SSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLT------AGYGSTSTAGYESSLIAG 499 Query: 5012 GTGNSTSLGQTQLLQVVGSSNTTTAGPSAQAIISGNGNTTTIGGGSNVQITGQVNSTTIG 5071 T+ + L GS+ T +I+G G+T+T G S++ I G ++ T Sbjct: 500 YGSTQTAGYGSTLTAGYGSTQTAQNESD---LITGYGSTSTAGANSSL-IAGYGSTQTAS 555 Query: 5072 DGSIITITGNSNNTTTGAYDQIAINSGNNTTHTGYGTNATINGNGNVTTVGNNSGLTVNG 5131 S++T S T D + +G +T T ++ I G G+ T +S LT Sbjct: 556 YNSVLTAGYGSTQTAREGSD---LTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGY 612 Query: 5132 ASNNSAAGTSSTEVINGIGNYTTSGDFSSMTLNGSSNTGVTGNSSNVYVYGSGDAGHAGS 5191 S +A S + G G+ +T+G SS+ S NS YGS GS Sbjct: 613 GSTQTAREQS--VLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGS 670 Query: 5192 SSNLWLYGSNNAGYIGNSSVMYLGSATASY 5221 ++ AG + Y + TA Y Sbjct: 671 DLTAGYGSTSTAGADSSLIAGYGSTQTAGY 700 Score = 53.6 bits (128), Expect = 2e-08 Identities = 230/1035 (22%), Positives = 383/1035 (37%), Gaps = 104/1035 (10%) Query: 3684 TVTGSKATVNVAGSGDAVTITAGTVAAADGSSVSVHGNNDVISGGKGASIAVTGTAEAIT 3743 T T K + AG G T A + A S G + G G++ ++ Sbjct: 279 TQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTA 338 Query: 3744 LGGSTLVLTDDGVNASIAGTGGQITVGNNVTIDLKAANSALTAGYGFSTTIEGAGDSVTA 3803 GST DD ++ IAG G T G + S+LTAGYG ST G +TA Sbjct: 339 GYGSTGTAGDD--SSLIAGYGSTQTAGED---------SSLTAGYG-STQTAQKGSDLTA 386 Query: 3804 SIQAHVVATANSEVVSVGASSNVFVTGDAGSITAGSSSQISLNGSNATILAKDSEQVTIT 3863 + A A+S +++ G S ++ S+Q + GS+ T Sbjct: 387 GYGSTGTAGADSSLIA-GYGSTQTAGEESTQTAGYGSTQTAQKGSDLT-----------A 434 Query: 3864 GNNDQAKIGDQSTITINGSSDTTTAGALAVVNVTGSGDITNAGSGLTLVVNGDGNTQTAG 3923 G GD S++ S T ++ GS GS LT G G+T TAG Sbjct: 435 GYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTA---GYGSTSTAG 491 Query: 3924 DGATMTITGANETTSAGDKSTITQKGANSTTIAGKSAKVTVTGDQGKTSVGNGSSATVAG 3983 +++ I G T +AG ST+T ++ T +S + G TS +S+ +AG Sbjct: 492 YESSL-IAGYGSTQTAGYGSTLTAGYGSTQTAQNES---DLITGYGSTSTAGANSSLIAG 547 Query: 3984 LSEVVTGGMQSVL-AVSGDSATVTAGD-----FASVSVSGNNGSVTVGVGASAIVTGNHQ 4037 T SVL A G + T G + S +G++ S+ G G S H Sbjct: 548 YGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYG-STQTASYHS 606 Query: 4038 SITAGANSTVVAVGSLDTVTATDLGVSVSLSGTGSGQSTANLNGGSVALSNGTAVINGNG 4097 S+TAG ST A + L + T S+ GS Sbjct: 607 SLTAGYGSTQTA------REQSVLTTGYGSTSTAGADSSLIAGYGS-------------- 646 Query: 4098 DTITQNANSNALIVGTSNAVDVLGAGNTTAIGGGSITVEAAASTVATGNNDAAIVKSNGT 4157 TQ A N+++ + G+ G GS + A S++ G Sbjct: 647 ---TQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGS--------- 694 Query: 4158 LTLTGTGNSIDIAGSAASVTASNASVRVENGAGGTLNGASDTIAVGSNASLNLVGSNSSV 4217 T T NSI AG ++ TA S + +G G T +D+ + S +SS+ Sbjct: 695 -TQTAGYNSILTAGYGSTQTAQEGSD-LTSGYGSTSTAGADSSLIAGYGSTQTASYHSSL 752 Query: 4218 TVSGSGTSIGVTGTTDSIAISNGTVALGAASSITLSGDGNKISTSGRDTLIASGKNDSVA 4277 T T + + G+ + A S ++G G+ T+G +++ +G S Sbjct: 753 TAGYGSTQTAREQSV--LTTGYGSTSTAGADSSLIAGYGST-QTAGYHSILTAGYG-STQ 808 Query: 4278 VSGTGNVIAISNATIVLADGADAVIVGSNDTIIAGNNASLTLIGNNDGLTVNGSNATIDL 4337 + + + + A ++I G T AG N+ LT Sbjct: 809 TAQERSDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILT------------------- 849 Query: 4338 AGNGDSITMSSGSLTLEPGTIAAVTGSNNNIQQGKGLTQGDNAIIQATGSNGIFVAGNNA 4397 AG G + T S + G ++++ G G TQ T G Sbjct: 850 AGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEN 909 Query: 4398 HADVTGTKNVVVVGDNSSANVSGASNTIAAGNQAVVTLSGNGNSVTVGDSANVNITGASN 4457 TG + G SS ++G +T A ++ + + S+ G+++ Sbjct: 910 SDLTTGYGSTSTAGYESSL-IAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTS 968 Query: 4458 MLAAGASLTVDEGGTQNT--VTATTAAHGVLSGTNDQLTLGANASLQVTGSNDRFATGAS 4515 M +SL G TQ + TA +G TL A T D Sbjct: 969 MAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGY 1028 Query: 4516 SSVVVTGSNNQGTVGDASTVAVNGTLDGITAGNSATVTVGGSQDTINTGAGAWLTVNGNT 4575 S + +G + T G ST+ ++G +TAG +++ G + ++ G G+ + + Sbjct: 1029 GSSLTSGIRSFLTAGYGSTL-ISGLRSVLTAGYGSSLI-SGRRSSLTAGYGSNQIASHRS 1086 Query: 4576 DTVYTGDHSSVWLNGAHDTLGSSSAAAAWISVNIAGSYDSATVGANATATVSGTNALVTA 4635 + + + + N + G S+ A + DS + ++G ++ TA Sbjct: 1087 SLIAGPESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTA 1146 Query: 4636 GATSTLTLGGSANDASVGDSAKITLAGSGNIVSGGKTSSASVTGSSDKLTLGSAANVTVQ 4695 G S L L G+ + + GD +K+T +++G ++ +T + + + + Sbjct: 1147 GDRSKL-LAGNNSYLTAGDRSKLTAGNDCILMAGDRS---KLTAGINSILTAGCRSKLIG 1202 Query: 4696 GNGNTSTVGDGSTVV 4710 NG+T T G+ S ++ Sbjct: 1203 SNGSTLTAGENSVLI 1217
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 333 bits (855), Expect = e-111 Identities = 149/468 (31%), Positives = 239/468 (51%), Gaps = 29/468 (6%) Query: 39 PVRLNAEEREFLPAALEVIETPLSPTLRLTAATLCAIIVGAIAWASLSHLDMVAVADGKV 98 PVR +E EFLPA LE+IETP+S RL A + +V A + L +++VA A+GK+ Sbjct: 32 PVRE-KDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKL 90 Query: 99 VPLGQVKVVQPLETAMIRAIHVDEGDHVRAGQLLVDLDPTEARADLDSLRSVRAQAALDA 158 G+ K ++P+E ++++ I V EG+ VR G +L+ L A AD +S QA L+ Sbjct: 91 THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQ 150 Query: 159 EVARVLLT---RNAEEEFRPPADADPVLVTQSRDQARRE-IEKHLATTAAYLA----DIA 210 ++L N E + P + V++ I++ +T ++ Sbjct: 151 TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLD 210 Query: 211 QKSAALEANDAQIERVQLTIPLLQEKNDVAKGLFEKGYGARPPVLESEQQLVEKRAELRA 270 +K A A+I R + + + + D L K A+ VLE E + VE ELR Sbjct: 211 KKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRV 270 Query: 271 AQVNVDQIQAEIRALKARLAEAAAGYLADATDRRTKALTKVAQLDQDLTKARQKESYRRL 330 + ++QI++EI + K + + D+ + + L +L K +++ + Sbjct: 271 YKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVI 330 Query: 331 VAPVDGSVQGLKIHTPGAVVTTADTLMTIVPDGTGIEVDCLIANKDIGFVSEGQDVEVKL 390 APV VQ LK+HT G VVTTA+TLM IVP+ +EV L+ NKDIGF++ GQ+ +K+ Sbjct: 331 RAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKV 390 Query: 391 EAFPFTRFGLVHGRVRKLGRDAATSPNAPPGSTAALMTQSANLPGAPPELSYPAKVTLAQ 450 EAFP+TR+G + G+V+ + DA L + +++ + Sbjct: 391 EAFPYTRYGYLVGKVKNINLDAIEDQR--------------------LGLVFNVIISIEE 430 Query: 451 DWIEVNGRHEPIRPGMRVSAEIKTGERRVIEYLLSPVVQAVKEAGRER 498 + + ++ P+ GM V+AEIKTG R VI YLLSP+ ++V E+ RER Sbjct: 431 NCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESLRER 478
>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C signature. Length = 170 Score = 82.6 bits (204), Expect = 1e-22 Identities = 40/104 (38%), Positives = 52/104 (50%) Query: 38 PDAVLGQVVWLMMNMPRYRHVFLADLEWMVLPPILLNQYRLFRAGDHIVAFAAWAYLSEE 97 P +LG V WL + P +R+ ++ VLP I NQY L D+ VA+ +WA LS E Sbjct: 6 PLEILGHVSWLWASSPLHRNWPVSLFAINVLPAIQANQYVLLTRDDYPVAYCSWANLSLE 65 Query: 98 AEARLQEPNPRLAPTDWKSGDRLWLIDLHAPFGQQELALKELGE 141 E + L DW SGDR W ID APFG K + + Sbjct: 66 NEIKYLNDVTSLVAEDWTSGDRKWFIDWIAPFGDNGALYKYMRK 109
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 29.5 bits (66), Expect = 0.038 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Query: 196 YGASYFIWADPAVS---DLTDSLHLGFDAKVEEGVRFPDAAANEFEVTLFSQLD 246 Y + F DPA+ L SL+ + K + + P E + FSQL+ Sbjct: 209 YKYNKFY-IDPAMELTKCLIKSLYFLYGIKPSDNLVVPYRLRTELDNKQFSQLN 261
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 113 bits (284), Expect = 1e-31 Identities = 39/155 (25%), Positives = 69/155 (44%) Query: 7 SRGEIFVVDDDPAVRDTLSMVLSAGGYEVICFADGAALLAVARSRTPSCILLDVHIPGKS 66 + I V DDD A+R L+ LS GY+V ++ A L + ++ DV +P ++ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 67 GLDILRELHGEDYPAPIFMISGQGDIPMAVNAIKNGALDFIEKPFRGSEIVARLNEAIGA 126 D+L + P+ ++S Q A+ A + GA D++ KPF +E++ + A+ Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 127 FARRQKENASPKIGSLHFPGREPLTRREREVLEQF 161 RR + + GR + VL + Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARL 156
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 65.2 bits (159), Expect = 4e-15 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%) Query: 26 LLVVDDDAAQRTLISLAAKQAGHAVTVVSNCNDAIREVRNKRFDCVTLDLMLEDGDGTEV 85 +LV DDDAA RT+++ A +AG+ V + SN R + D V D+++ D + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 86 LRAIADSRFAGSVIVISGMDAARRIAARLYARSLGIDLQSLPKPVDL 132 L I +R V+V+S + + LPKP DL Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGA----YDYLPKPFDL 108
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 6e-22 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 3/124 (2%) Query: 5 LVVDDSSVVRKIARRILEELGFSVVEAEDGEQALELCTKSLPDAILLDWNMPVMDGYDFL 64 LV DD + +R + + L G+ V + D ++ D MP + +D L Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLL 66 Query: 65 GRLRRLPGGDGPKVVFCTTENDIDHISRALNAGANEYIMKPFD-KEIVAAKFQEVGLIQA 123 R+++ V+ + +N +A GA +Y+ KPFD E++ + + + Sbjct: 67 PRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 124 LSAE 127 ++ Sbjct: 125 RPSK 128
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 7e-21 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 4/134 (2%) Query: 800 QTQSVLLVDDSPFFRNMLAPVLKSAGYKVRTAASAIEGLATLRSGHTFDIVVTDIEMPEM 859 ++L+ DD R +L L AGY VR ++A + +G D+VVTD+ MP+ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE 60 Query: 860 NGFEFAETIRADQNLHHLPVIAVSSLVSPAAIERGRQAGLYDYIAK-FDRPGLIAAMKEQ 918 N F+ I+ + LPV+ +S+ + + + G YDY+ K FD LI + Sbjct: 61 NAFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 919 IEERARAEANRRAA 932 + E R + Sbjct: 119 LAEPKRRPSKLEDD 132
>FLAGELLIN#Flagellin signature. Length = 507 Score = 57.7 bits (139), Expect = 5e-11 Identities = 80/499 (16%), Positives = 151/499 (30%), Gaps = 8/499 (1%) Query: 25 LQSTAQLLATTQNNLSTGKKVNSALDNPTNFFTAQGLDNRASDISNLLDGIGNGVQVLQA 84 L + L++ LS+G ++NSA D+ A + ++ +G+ + Q Sbjct: 17 LNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQT 76 Query: 85 ANTGITSLQKLVDSAKSIANQVLQSAVGYSTKSSVTSAALSGATATDLLGSSSTAVTGSV 144 + + + + ++ Q S S+ ++ S+ V Sbjct: 77 TEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEI--QQRLEEIDRVSNQTQFNGV 134 Query: 145 VQNDATTSSAITGSTKLSGTSGSSSNDLATGITSGETLVVNGTTFTFVTGTSSSGTNIGI 204 I T + + VNG V SS N+ Sbjct: 135 KVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTG 194 Query: 205 GDTVSNLLSTIQTATGVTGSVSAGAITLTPPAAGLTLSGSSGTLAKLGLSAVGDGLSGQT 264 DT + + + V+ P + + T + + Sbjct: 195 YDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDD---AENNTAVDLFK 251 Query: 265 LTVGATAGGTATSITFGLGTGQVKSLNDLNAKLAANNLQATVDSSTGKITITTTNDAASA 324 T A +I + G+ D + + D + ++TT + Sbjct: 252 TTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK---VSTTINGEKV 308 Query: 325 TIGTIGGTAAASSQSFNGLTAAAPVADSTAQTQRANLVSQYNNVLAQINTTAADSSFNGI 384 T+ TA A++ L ++ V S Q N + A ++ Sbjct: 309 TLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGES 368 Query: 385 NLLNGDTLKLTFNETGKSTLSITGVTFNSAGLGLSTLTSGTDFLDNNSANKVIKVLNTAS 444 + K TL+ + + G+STL + S + +++A Sbjct: 369 KITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSAL 428 Query: 445 STLRDEASTLGSNLSVVQVRQDFNKNLINVLQTGSSNLTLADTNEEAANSQALSTRQSIA 504 S + S+LG+ + N + L + S + AD E +N Q Sbjct: 429 SKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAG 488 Query: 505 VSALSLANQSQASVLQLLR 523 S L+ ANQ +VL LLR Sbjct: 489 TSVLAQANQVPQNVLSLLR 507
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 39.4 bits (92), Expect = 1e-05 Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 35/164 (21%) Query: 1 MRILITGTSGQVGGAL-RRLLPAG----GTD---------------ELICPPRAAF---D 37 M+ L+TG +G +G + +RLL AG G D EL+ P F D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 38 LTQPASLAGALDRLAPDLILNPAAYTAV------DRAEDEAELAMTVNGQAPGVIAQWAA 91 L + + + AV A ++ L +N + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILE---GCRHNK 117 Query: 92 PRRVPLLHVSTDYVFDGAGEHPWRESDAVG-PLSAYGRSKLAGE 134 + LL+ S+ V+ + P+ D+V P+S Y +K A E Sbjct: 118 IQH--LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE 159
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 26.7 bits (59), Expect = 0.034 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%) Query: 74 AMRGRVLDVAVDVRVGSPNFGKHV 97 AMRG V+D+AV V +G+ FGK V Sbjct: 11 AMRGNVVDLAVGVIIGAA-FGKIV 33
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 163 bits (413), Expect = 2e-49 Identities = 78/346 (22%), Positives = 134/346 (38%), Gaps = 40/346 (11%) Query: 7 TIFVTGGAGFIGSAVVRHLLRDTHARVVNIDKLT--YAANL-DSLPGAAGNPHYAFEQAD 63 VTG AGFIG V + LL H +VV ID L Y +L + P + F + D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 64 ICDAAALRKLFDKYQPDAVMNLAAESHVDRSIDGPGEFIQTNIVGTFTLLQEALRHFRSL 123 + D + LF + V V S++ P + +N+ G +L E RH Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNIL-EGCRHN--- 116 Query: 124 SPEKRAGFRFLHISTDEVFGTLGDTGLFTETTAYAPNSPYSASKASSDHLVRAWRETYEL 183 + L+ S+ V+G T+ + P S Y+A+K +++ + + Y L Sbjct: 117 KIQ-----HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171 Query: 184 PTMITNCSNNYGPYHFPEKLIPHMIIKGLGFETLPVYGDGQNIRDWLFVEDHARALTLVL 243 P YGP+ P+ + L +++ VY G+ RD+ +++D A A+ + Sbjct: 172 PATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQ 231 Query: 244 ERGQV------------------GETYNVGGRNERTNLHVVETICDLLDAVAPGPQGGRR 285 + YN+G + + ++ + D L G Sbjct: 232 DVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDAL---------GIE 282 Query: 286 QLISFVTDRPGHDRRYAIDASKLERELGWRAEETFETGIAKTVRWY 331 + + +PG + D L +G+ E T + G+ V WY Sbjct: 283 AKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWY 328
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 195 bits (497), Expect = 3e-59 Identities = 76/436 (17%), Positives = 169/436 (38%), Gaps = 13/436 (2%) Query: 30 AIREAPEPVGARATLYVLVAMILSLIAVMCLMRLDRVVQSVGGKIVPLDAINVLQALDAS 89 + E P R Y ++ ++ + L +++ V + GK+ ++ ++ S Sbjct: 47 ELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVA-TANGKLTHSGRSKEIKPIENS 105 Query: 90 IIKTIDVREGQQVASGQLLATLDPTFTQADVAQYKAQVASLSAQVARDKAELAG------ 143 I+K I V+EG+ V G +L L +AD + ++ + + R + Sbjct: 106 IVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKL 165 Query: 144 TPLVFPPSDDAEFAS--YAKLQLALYRQRRAQYDAQIASFDSKISQTEATIAKLQKDDER 201 L P + S +L +++ + + Q + + + A + R Sbjct: 166 PELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINR 225 Query: 202 YGQRDDVLQKIETMRSTLAESGSGSKLNLYISQDTRLELLRQIDSTHNSLIEAKHQVESL 261 Y V + S+L + +K + ++ +E + ++ + L + + ++ S Sbjct: 226 YENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA 285 Query: 262 RADRKAFIEQWNAQLSQDLVTTQNSLDAANAAYDKAIRHQDLVRLSAPEPSVVLTLAKLS 321 + + + + + ++ L T +++ K Q + AP V L + Sbjct: 286 KEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHT 345 Query: 322 VGSVLKPGDPFITLMPLRARLEAEIRIASRDIGFVRPGDPCTLKVDAFNHVEHGTAQGTI 381 G V+ + + ++P LE + ++DIGF+ G +KV+AF + +G G + Sbjct: 346 EGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKV 405 Query: 382 RWVSEGAFTLDDDGKPVDAYYKARCSVDATNFHDVPAGFRLIPGMTLTGDINIGTRSAAM 441 + ++ A D + S++ L GM +T +I G RS Sbjct: 406 KNINLDA-IEDQRLGL---VFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVIS 461 Query: 442 YVLGSMLHGLGQAMRE 457 Y+L + + +++RE Sbjct: 462 YLLSPLEESVTESLRE 477
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 101 bits (253), Expect = 1e-24 Identities = 81/257 (31%), Positives = 105/257 (40%), Gaps = 20/257 (7%) Query: 182 GGSGYDLLF-GSGADKLAGGDGDDTL-YGGTASDLLGGNGNDILISGSDAVH------AN 233 G G D +F +G+ + G G D + Y T + L +G +G+ V Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVK 675 Query: 234 VLDGGADSDQLYAGAGQDSL---------YGGAGSDILVFGSAAQYADGDDDNDLVVGGA 284 VL ++ G + G + + G D G Sbjct: 676 VLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSK 735 Query: 285 GNDALHGGNGNDAIYSNSVASQGAKLYGDSGNDSLYAGAGADSLCGGADADLLIGGAATA 344 D HG +G+D I N +LYGD GND+L G G D L GG D LIG A Sbjct: 736 FTDIFHGADGDDLIEGND---GNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNN 792 Query: 345 VLDGGGGDDVVYSNSNSSQGTVVYGGGGNDQLYAGYGNDTLYGGSGHDLLKAGYGNGVTV 404 L+GG GDD NS V++GG GND+LY G D L GG G DLLK GYGN + Sbjct: 793 YLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYR 852 Query: 405 MIGGDDGSSFTDDTGGN 421 + G DD G Sbjct: 853 YLSGYGHHIIDDDGGKE 869 Score = 97.0 bits (241), Expect = 3e-23 Identities = 81/311 (26%), Positives = 128/311 (41%), Gaps = 35/311 (11%) Query: 127 GNGDNQVFVNDSAAVTVLTGSGNDTIYAGAG------AD-TLSSGAGNDVLVDQVSGAS- 178 G+GD++VF++ +A + G G+D +Y D T ++ AGN + + G Sbjct: 617 GDGDDKVFLSAGSAN-IYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVK 675 Query: 179 -LLDGGSGYDLLFGSGADKLAGGDGDDTLYGG----------TASDLLGGNGNDILISGS 227 L + ++ G +K + T G + +L+G D Sbjct: 676 VLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSK 735 Query: 228 DAVHANVLDGGADSDQLYAGAGQDSLYGGAGSDILVFGSAAQYADGDDDNDLVVGGAGND 287 ++ G D + G D LYG G+D L G+ G D ND ++G AGN+ Sbjct: 736 ---FTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNN 792 Query: 288 ALHGGNGNDAIYSNSVASQGAKLYGDSGNDSLYAGAGADSLCGGADADLLIGGAATAVLD 347 L+GG+G+D + L+G GND LY GAD LL GG +L Sbjct: 793 YLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGAD---------LLDGGEGDDLLK 843 Query: 348 GGGGDDVVYSNSNSSQGTVVYGGGGNDQLYAGYGN--DTLYGGSGHDLLKAGYGNGVTVM 405 GG G+D+ S + GG D+L + D + G+DL+ V + Sbjct: 844 GGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNV-LS 902 Query: 406 IGGDDGSSFTD 416 IG +G +F + Sbjct: 903 IGHKNGITFRN 913 Score = 56.5 bits (136), Expect = 2e-10 Identities = 56/235 (23%), Positives = 86/235 (36%), Gaps = 49/235 (20%) Query: 237 GGADSDQLYAGAGQDSLYGGAGSDILVFG---SAAQYADGDDDNDL-------VVGGAGN 286 G D+++ AG ++Y G G D++ + + DG + V+GG Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVK 675 Query: 287 DALHGGNGNDAIYSNSVASQGAKLYGDSGNDSLYAGAG---------ADSLCGGADADLL 337 L + SV + K S + G + L G AD Sbjct: 676 -VLQEVVKEQEV---SVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKF 731 Query: 338 IGGAATAVLDGGGGDDVVYSNSNSSQGTVVYGGGGNDQLYAGYGNDTLYGGSGHDLLKAG 397 G T + G GDD++ N + + +YG GND L G G+D LYGG G+D L Sbjct: 732 FGSKFTDIFHGADGDDLIEGNDGNDR---LYGDKGNDTLSGGNGDDQLYGGDGNDKLIGV 788 Query: 398 YGNGVTVMIGGDDGSSFTDDTGGNTSSMVGGAGQDFFYLKNL-FTPDTIDGGGGD 451 GN + + GG G D F ++ + + GG G+ Sbjct: 789 AGN----------------------NYLNGGDGDDEFQVQGNSLAKNVLFGGKGN 821
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 101 bits (253), Expect = 1e-24 Identities = 89/335 (26%), Positives = 124/335 (37%), Gaps = 55/335 (16%) Query: 131 GAGNDTIYAGAGSDSIESGSGNDVLVDQVSGTSTLSAGAGNDYLFGFGADTLFGGSG--- 187 G G+D ++ AGS +I +G G+DV+ + T L+ G T G Sbjct: 617 GDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKV 676 Query: 188 -------NDTLYGGTSSELHGGDDNDVLISGSNSHTANLLYGDGGNDQLFGGAGSDSLYG 240 + G + + I+G N + LY ++L G +D +G Sbjct: 677 LQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLY---SVEELIGTTRADKFFG 733 Query: 241 GAGADTLTAGIGNQLLDGGDDNDIILGNVAGYDSLYGGNGNDIIYSNSAATHASLLSGDA 300 D G+ L++G D ND LYG GND + SG Sbjct: 734 SKFTDIFHGADGDDLIEGNDGNDR----------LYGDKGNDTL------------SGGN 771 Query: 301 GNDSLYAGDGSDLLFGGTGNDLLVGGARTAELHGGADNDALYSYSDASHGTQLFGDAGND 360 G+D LY GDG+D L G GN+ L+GG +D ++ LFG GND Sbjct: 772 GDDQLYGGDGNDKLIGVAGNNY---------LNGGDGDDEFQVQGNSLAKNVLFGGKGND 822 Query: 361 SLYAGSGADTLYGGAGNDLLVGGASTVVLNGGDDNDTVYSFSDSSHATSLYGGAGNDTLY 420 LY GAD L GG G+D +L GG ND S H G D L Sbjct: 823 KLYGSEGADLLDGGEGDD---------LLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLS 873 Query: 421 GGSGS--DTLYGGSGNDVLVAGSGTQTLIGGSDGS 453 D + GND+++ L G Sbjct: 874 LADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNG 908 Score = 97.0 bits (241), Expect = 4e-23 Identities = 83/281 (29%), Positives = 111/281 (39%), Gaps = 40/281 (14%) Query: 225 GNDQLFGGAGSDSLYGGAGADTLTAGIGNQ---LLDG---------------GDDNDIIL 266 G+D++F AGS ++Y G G D + + +DG G D ++ Sbjct: 619 GDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKVLQ 678 Query: 267 GNVAGYDSLYGGNGNDIIYSNSAATHASLLSGDAGNDSLYAGD---GSDLLFGGTGNDLL 323 V + G Y + TH +L D + L G T D Sbjct: 679 EVVKEQEVSVGKRTEKTQYRSYEFTHI-------NGKNLTETDNLYSVEELIGTTRADKF 731 Query: 324 VGGARTAELHGGADNDALYSYSDASHGTQLFGDAGNDSLYAGSGADTLYGGAGNDLLVGG 383 G T HG +D + L+GD GND+L G+G D LYGG GND L+G Sbjct: 732 FGSKFTDIFHGADGDDLIEGNDGNDR---LYGDKGNDTLSGGNGDDQLYGGDGNDKLIGV 788 Query: 384 ASTVVLNGGDDNDTVYSFSDSSHATSLYGGAGNDTLYGGSGSDTLYGGSGNDVLVAGSGT 443 A LNGGD +D +S L+GG GND LYG G+D L GG G+D+L G G Sbjct: 789 AGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGN 848 Query: 444 QTLIGGS-DGSSFIGSSTGTASMVGGAGQDYFYLNNATSND 483 S G I G +D L + D Sbjct: 849 DIYRYLSGYGHHIIDDD--------GGKEDKLSLADIDFRD 881 Score = 93.5 bits (232), Expect = 5e-22 Identities = 70/202 (34%), Positives = 95/202 (47%), Gaps = 14/202 (6%) Query: 182 LFGGSGNDTLYGGTSSELHGGDDNDVLISGSNSHTANLLYGDGGNDQLFGGAGSDSLYGG 241 L G + D +G +++ G D D LI G++ + + LYGD GND L GG G D LYGG Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGN--DRLYGDKGNDTLSGGNGDDQLYGG 779 Query: 242 AGADTLTAGIGNQLLDGGDDNDI--ILGNVAGYDSLYGGNGNDIIYSNSAATHASLLSGD 299 G D L GN L+GGD +D + GN + L+GG GND +Y + A LL G Sbjct: 780 DGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEG---ADLLDGG 836 Query: 300 AGNDSLYAGDGSDLLFGGTGNDLLVGGARTAELHGGADNDALYSYSDASHGTQLFGDAGN 359 G+D L G G+D+ +G G + GG D L S +D F GN Sbjct: 837 EGDDLLKGGYGNDIYRYLSGY-----GHHIIDDDGG-KEDKL-SLADIDFRDVAFKREGN 889 Query: 360 DSLYAGSGADTLYGGAGNDLLV 381 D + + L G N + Sbjct: 890 DLIMYKGEGNVLSIGHKNGITF 911 Score = 82.7 bits (204), Expect = 1e-18 Identities = 72/230 (31%), Positives = 89/230 (38%), Gaps = 33/230 (14%) Query: 114 GADQIYINDTAN-VTVLTGAGNDTIYAGAGSDSIESGSGNDVLVDQVSGTSTLSAGAGND 172 + D V L G + G+ I G+ D L++ G L GND Sbjct: 706 NGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGND 765 Query: 173 YLFG-FGADTLFGGSGNDTLYGGTSSE-LHGGDDNDVLISGSNSHTANLLYGDGGNDQLF 230 L G G D L+GG GND L G + L+GGD +D NS N LF Sbjct: 766 TLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKN---------VLF 816 Query: 231 GGAGSDSLYGGAGADTLTAGIGNQLLDGGDDNDIILGNVAGYDSLYGGNGNDIIYSNSAA 290 GG G+D LYG GAD L G G+ LL GG NDI G G+ II + Sbjct: 817 GGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYR--------YLSGYGHHIIDDDG-- 866 Query: 291 THASLLSGDAGNDSLYAGDGS--DLLFGGTGNDLLVGGARTAELHGGADN 338 D L D D+ F GNDL++ L G N Sbjct: 867 ---------GKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKN 907 Score = 79.2 bits (195), Expect = 1e-17 Identities = 72/282 (25%), Positives = 111/282 (39%), Gaps = 47/282 (16%) Query: 258 GGDDNDIILGNVAGYDSLYGGNGNDIIYSNSAATHASLLSGDAGND------SLYAGDGS 311 GD +D + + AG ++Y G G+D++Y + T + G + + G Sbjct: 616 LGDGDDKVFLS-AGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDV 674 Query: 312 DLLFGGTGNDLLVGGARTAEL---------HGGAD---NDALYSYSD---ASHGTQLFGD 356 +L + G RT + G + D LYS + + + FG Sbjct: 675 KVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGS 734 Query: 357 AGNDSLYAGSGADTLYGGAGNDLLVGGASTVVLNGGDDNDTVYSFSDSSHATSLYGGAGN 416 D + G D + G GND L G L+GG+ +D LYGG GN Sbjct: 735 KFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDD------------QLYGGDGN 782 Query: 417 DTLYGGSGSDTLYGGSGND------------VLVAGSGTQTLIGGSDGSSFIGSSTGTAS 464 D L G +G++ L GG G+D VL G G L GS+G+ + G Sbjct: 783 DKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLY-GSEGADLLDGGEGDDL 841 Query: 465 MVGGAGQDYFYLNNATSNDTIDGGGGNLDSVTFLDHSQADLS 506 + GG G D + + + ID GG D ++ D D++ Sbjct: 842 LKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVA 883 Score = 60.8 bits (147), Expect = 1e-11 Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 43/195 (22%) Query: 100 VVNGSDPVLVATGGGADQIYINDTANVTVLTGAGNDTIYAGAGSDSIESGSGNDVLVDQV 159 + +G+D + G + D N T+ G G+D +Y G G+D + +GN+ Sbjct: 739 IFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNN------ 792 Query: 160 SGTSTLSAGAGNDYL----FGFGADTLFGGSGNDTLYGGTSSELHGGDDNDVLISGSNSH 215 L+ G G+D + LFGG GND LYG + Sbjct: 793 ----YLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGA------------------ 830 Query: 216 TANLLYGDGGNDQLFGGAGSDS-LYG-GAGADTLTAGIGNQLLDGGDDNDIILGNVAGYD 273 +LL G G+D L GG G+D Y G G + DGG ++ + L ++ D Sbjct: 831 --DLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDD-------DGGKEDKLSLADIDFRD 881 Query: 274 SLYGGNGNDIIYSNS 288 + GND+I Sbjct: 882 VAFKREGNDLIMYKG 896 Score = 33.8 bits (77), Expect = 0.002 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 14/101 (13%) Query: 96 DATLVVNGSDPVLVATGGGADQIYINDTANVTVLTGAGNDTIYAGAGSDSIESGSGNDVL 155 D + V G++ + G Q+ N A + G GND +Y G+D ++ G G+D+ Sbjct: 783 DKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDL- 841 Query: 156 VDQVSGTSTLSAGAGND---YLFGFGADTLF-GGSGNDTLY 192 L G GND YL G+G + G D L Sbjct: 842 ---------LKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLS 873
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.8 bits (67), Expect = 0.024 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Query: 1 MNISIFGL-GYVGTVCAACLAELGHHIIGVD 30 M + G G++G + L E GH ++G+D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGID 31
>cloacin#Cloacin signature. Length = 551 Score = 28.5 bits (63), Expect = 0.021 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 4/76 (5%) Query: 139 TGDTGTAATGAGGAGSAGASGGQTTGLGTGT----GGGGGLEAINGNSVNTGQFSFTAGT 194 TG T+ GG G GG + G G + GGG I+ + G Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 195 SGGGSSTGSTTSTTST 210 SGGGS TG S + Sbjct: 71 SGGGSGTGGNLSAVAA 86
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 30.5 bits (68), Expect = 0.010 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 270 FRDPAGYFLATRFQLRNKDVLYASNATSVEDAKVMQQIRLVTATVNDPIVAAYNATLLRN 329 F DP+ L R LR KD L +E + + T+ I A A L Sbjct: 119 FPDPSDLVLVLRELLRRKD-LEEIVRKKLESLLKHVEEQTDPKTLKAGINCALKARLFGK 177 Query: 330 TIKLAP 335 T+ L P Sbjct: 178 TLSLKP 183
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.002 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 5/68 (7%) Query: 49 PDQTEAAETVPLDSAISREAWKERIRQARQRAERARRDAAARPRETDLPAPSPDDLATER 108 P+ + +TV + + QA + + + AR E +P P+P + Sbjct: 983 PEVEKRNQTVDTTNITTPNN-----IQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT 1037 Query: 109 ILRDETLQ 116 E + Sbjct: 1038 ETVAENSK 1045
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 5e-15 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 9/117 (7%) Query: 586 SVLVVEDNIDVGRSATEALAELGYLTTLVDNAKDALEELIDGASRFDVVFTDVVMPGMTG 645 ++LV +D+ + +AL+ GY + NA + A D+V TDVVMP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI--AAGDGDLVVTDVVMPDENA 62 Query: 646 LELAEEIRRLELNIPVVLASGYSHVLA-----QQGTNGFELLRKPYSIEELSRVLHK 697 +L I++ ++PV++ S + + ++G ++ L KP+ + EL ++ + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGA--YDYLPKPFDLTELIGIIGR 117
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 30.3 bits (68), Expect = 0.020 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 11 IQDIERPVTSEPVKGPIIEIAAENGDQVEPPPPEVV-EPDPELSPEE 56 Q IE P ++P+ ++ A Q PPPE V EP+PE P Sbjct: 33 HQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIP 79
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 26.2 bits (57), Expect = 0.014 Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 2/37 (5%) Query: 17 PVEPPPEDPVGHPSPEVPPPVHEPDTPAPP--RELPG 51 P P P G P+ P P E P PP REL Sbjct: 572 PPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSA 608 Score = 25.4 bits (55), Expect = 0.028 Identities = 12/39 (30%), Positives = 12/39 (30%) Query: 6 PPEIPPATPGHPVEPPPEDPVGHPSPEVPPPVHEPDTPA 44 PP PA P P P P PP E A Sbjct: 572 PPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAA 610 Score = 25.0 bits (54), Expect = 0.036 Identities = 9/33 (27%), Positives = 12/33 (36%) Query: 20 PPPEDPVGHPSPEVPPPVHEPDTPAPPRELPGQ 52 PP P P P+ P P P+ G+ Sbjct: 572 PPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGR 604
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 66.5 bits (162), Expect = 2e-14 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 14/116 (12%) Query: 209 ITFDTGSWEIAPDQVAKLQVIADGLNQAIQRNPREVYLIEGHTDAVGNETDNLSLSDRRA 268 + F+ + P+ A L + L+ ++ V + G+TD +G++ N LS+RRA Sbjct: 221 VLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVV--VLGYTDRIGSDAYNQGLSERRA 278 Query: 269 ESVATLLTQQFGVPAENLTSQGYGEQY-----------LKEQTQGPSRINRRVTVR 313 +SV L + G+PA+ ++++G GE + +RRV + Sbjct: 279 QSVVDYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.5 bits (63), Expect = 0.035 Identities = 23/151 (15%), Positives = 46/151 (30%), Gaps = 8/151 (5%) Query: 129 QAQPFVRDGGQRERGDNQQPYQRDQQQPREHREAREHRQPREHREPREPREHREPRENRE 188 + ++ + + Q + Q +E E QP+ EP + + + Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA--EPARENDPTVNIKEPQ 1159 Query: 189 AQEHRDREPREHRERPQPAAYQPQPQPVIADSGVDRLPSFITGPQPQIANA--PAAFEGG 246 +Q + + + + QPV + V+ S + P+ P Sbjct: 1160 SQTNTTADTEQPAKETSSNV----EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSES 1215 Query: 247 AERYPRRRRRPHGPRPEAAAAAPAPSEDLNP 277 + + R RR P A S D + Sbjct: 1216 SNKPKNRHRRSVRSVPHNVEPATTSSNDRST 1246
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 587 bits (1515), Expect = 0.0 Identities = 176/543 (32%), Positives = 288/543 (53%), Gaps = 3/543 (0%) Query: 184 TGAVLSDGIALGHVVLH-EPRVVVNNYIAEDLPKEIKRLDAALVKLRADLDRMLERGDVA 242 TG S G+A+ +H EP V + D+ EI++L AAL K + +L + ++ + + Sbjct: 6 TGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEAS 65 Query: 243 DGGEHREVLEAYRMFANDQGWSHKLHEAVAT-GLTAEAAVERVQSDTRARMLRSTDPYLR 301 G + E+ A+ + +D + + + AE A++ V + + Y++ Sbjct: 66 MGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEYMK 125 Query: 302 ERLHDLEDLGYRLLRQLVGQDHAPSRDHLPDNAILIARAMGPAALLDYDRKRLRGLVLEE 361 ER D+ D+ R+L L+G S + + ++IA + P+ +++ ++G + Sbjct: 126 ERAADIRDVSKRVLGHLIGV-ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDI 184 Query: 362 GTANSHVAIVARALGIPAVGEVPNAPGIADPGDAIIVDGTSGSIYVRPSAEIESAYAERV 421 G SH AI++R+L IPAV GD +IVDG G + V P+ E AY E+ Sbjct: 185 GGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKR 244 Query: 422 RFRARRQAQYSELRNKPCKTKDGQPVELMINAGLVIDLPHIEDTGSAGIGLFRTELQFMV 481 +++ ++++L +P TKDG VEL N G D+ + G GIGL+RTE +M Sbjct: 245 AAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMD 304 Query: 482 SASLPRSSDQLALYRTVLDAAGSKPVTFRTLDIGGDKALPYMETVIEENPALGWRAIRLG 541 LP +Q Y+ V+ KPV RTLDIGGDK L Y++ E NP LG+RAIRL Sbjct: 305 RDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAIRLC 364 Query: 542 LDRPGLLRGQIRALLRAGGGRSLRIMFPMISEVAEFDTAKAIVERELTYLRQHGHTLPER 601 L++ + R Q+RALLRA +L++MFPMI+ + E AKAI++ E L G + + Sbjct: 365 LEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDS 424 Query: 602 VDIGTMLEVPALLYQMDELLAKVDFISVGSNDLFQFLFAVDRGNAKVSERFDTLSTPILR 661 +++G M+E+P+ + +VDF S+G+NDL Q+ A DR N +VS + ILR Sbjct: 425 IEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAILR 484 Query: 662 ALQEIVRKAKAAKRSVSLCGEMASKPIGALALIALGYRSLSLSATAHGPVKAMILELDAA 721 + +++ A + + V +CGEMA + L+ LG S+SAT+ P ++ +L+L Sbjct: 485 LVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKE 544 Query: 722 KAE 724 + + Sbjct: 545 ELK 547
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 29.4 bits (66), Expect = 0.026 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 109 ASARIVGIDGSELIQRFQERKEVAVIAGFQGINA--ETGRITTL-GRGGSDTSAVAIAAA 165 S G +E I++ ER + + +G G+ E G I + D + +A Sbjct: 166 PSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEE 225 Query: 166 IKADRCDIYTDVDGVYTTDPRVVPKAKRLDKIAFEDMLELASQG 209 + AD I TDV+G K + L ++ E++ + +G Sbjct: 226 VNADIFMILTDVNGAALYYGT--EKEQWLREVKVEELRKYYEEG 267
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.004 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Query: 112 DVNQTIMGRILNYGDVTILGVGEGKETISTIAEPLAFRNAITAR 155 DV Q + G +LN + + GEGK +T+ A+ NA+T + Sbjct: 85 DV-QLLGGMVLNERCIAEMRTGEGKTLTATLP---AYLNALTGK 124
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 28.7 bits (64), Expect = 0.014 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%) Query: 132 PDNPDWKLLSVQGTVLDQMARHEEARRYYESALKIVPGEPSVLSNLGLSYMLTRELPKAE 191 + + L G M +++ A Y + EP + + EL +AE Sbjct: 67 HYDSRFFL--GLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAE 124 Query: 192 ETL 194 L Sbjct: 125 SGL 127
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 28.3 bits (63), Expect = 0.040 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 7/98 (7%) Query: 164 IKAGLPLFESIKVVAADAPEP-LRSEFLAIIETQAIGMPLGEACARLYERMPLPEANFFG 222 + A +PL E++ VA + +P L A+ G L +A + E + Sbjct: 81 VAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADA---MKCFPGSFERLYCA 137 Query: 223 IVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKI-QAM 259 +V A + G+L L L+ R++M +I QAM Sbjct: 138 MVAAGET--SGHLDAVLNRLADYTEQRQQMRSRIQQAM 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.7 bits (85), Expect = 2e-04 Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 12/138 (8%) Query: 64 GGMAAAIEAYRSAPTPNVIILETDARSDILAGLDHLATV--CDPGTRVVVIGRVNDVTLY 121 A + ++++ TD D L + P V+V+ N Sbjct: 34 SNAATLWRWIAAGD-GDLVV--TDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTA 90 Query: 122 RELVRRGVSDYVLSPVTPIDVVRSICNLFSAPEAKAVGRIIAVVGAKGGVGASTIAHNIA 181 + +G DY+ P +++ I + P+ + VG S Sbjct: 91 IKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSA------ 144 Query: 182 WAIARDLAMDSVVADLDL 199 A+ + + + DL Sbjct: 145 -AMQEIYRVLARLMQTDL 161
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 118 bits (298), Expect = 1e-30 Identities = 63/274 (22%), Positives = 117/274 (42%), Gaps = 26/274 (9%) Query: 188 EKVVNSITVRGRDQVMLKVTVAEVQRSVVKQLGIDLSGQLNYGTAV--------VKFANS 239 E+V+ + +R R QV+++ +AEVQ + LGI + + T A + Sbjct: 334 ERVIAQLDIR-RPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGA 392 Query: 240 NPFTAYGSNLVSNNAVSAAFG------STPSVQATLRAMENAGVIRTLAEPNLTAISGES 293 N + G+ S + ++F + L A+ ++ LA P++ + Sbjct: 393 NQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNME 452 Query: 294 ATFIAGGEFPVPAGYSCDPTTHVCTTQISFKKFGISLNFTPIVLSEGRISMRVMTEVSEL 353 ATF G E PV G ++ T + K GI L P + + + + EVS + Sbjct: 453 ATFNVGQEVPVLTGSQTTSGDNIFNT-VERKTVGIKLKVKPQINEGDSVLLEIEQEVSSV 511 Query: 354 SNENSITLSQAVSSTTVNSLTVPSIKTRRAETTLEIPSGGAMAMAGLIQQQTKQAISGMP 413 ++ ++++ +S + TR + + SG + + GL+ + +P Sbjct: 512 AD----------AASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVP 561 Query: 414 GLMQLPVLGALFRSRDYVNNQTELMVLVTPFVVR 447 L +PV+GALFRS ++ LM+ + P V+R Sbjct: 562 LLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIR 595
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 40.9 bits (96), Expect = 8e-07 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 17/144 (11%) Query: 2 TLDLARLLIFPALMAFAAASDLLTMTISNRVSLALVAGFLVMAPLSGM-SMADMLMHCGA 60 L+ ++ DL M + ++++L L+ G L+ L G S+ D ++ GA Sbjct: 131 GWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVI--GA 188 Query: 61 GASLLVIAFTCFAF------GWIGGGDAKVASAAALWFGFAHLMNYLLYASIFGGVLTLA 114 A LV+ +AF +G GD K+ +A W G+ L LL +S+ G + + Sbjct: 189 MAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIG 248 Query: 115 LMQF----RQWPLPYGLAGQPWLA 134 L+ + P+P+G P+LA Sbjct: 249 LILLRNHHQSKPIPFG----PYLA 268
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 46.5 bits (110), Expect = 3e-09 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 8/93 (8%) Query: 58 VAEANDTLAGFVTIDAS----GYLDQLVVSPQHWGSPLATQLVDA----AKQKSPSGITL 109 + + G + I ++ ++ + V+ + + T L+ AK+ G+ L Sbjct: 69 LYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLML 128 Query: 110 LVNQDNARAIRFYKRNGFIVAGEDVNPTSGRPV 142 N A FY ++ FI+ D S P Sbjct: 129 ETQDINISACHFYAKHHFIIGAVDTMLYSNFPT 161
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 83.4 bits (206), Expect = 4e-20 Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 9/128 (7%) Query: 215 VVGDRFVFQSEVFFDTGQATLLPEGQQELNSVATALIDLDKQIPAEISWVLRVDGHTDVR 274 V F +S+V F+ +ATL PEGQ L+ + + L +LD + + + V G+TD Sbjct: 210 VQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGS-----VVVLGYTD-- 262 Query: 275 PINSPVFKSNWELSSARAISVVQYLISLGVPAQRLVAAGFAEFQPLDTANTDEAFRRNRR 334 I S + N LS RA SVV YLIS G+PA ++ A G E P+ D +R Sbjct: 263 RIGSDAY--NQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAAL 320 Query: 335 IELKLTER 342 I+ +R Sbjct: 321 IDCLAPDR 328
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 53.3 bits (128), Expect = 6e-10 Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 10/151 (6%) Query: 40 PGRIAP-TRVSDVRPRVSGIIVERLFRQGSEVKAGDPLYRIDPKPFEVEILSSRAALAKA 98 G++ R +++P + I+ E + ++G V+ GD L ++ E + L ++++L +A Sbjct: 87 NGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146 Query: 99 EAVHERAVQQARRIALLFKERAAPEVENEKAISSERE-----ATADIEARKADLAR--AQ 151 R Q ++ + ++ +E + E T+ I+ + + Q Sbjct: 147 RLEQTRY--QILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQ 204 Query: 152 LNLDYATVRAPIDGIVGAAQVSEGAIAVQNE 182 L+ RA ++ E V+ Sbjct: 205 KELNLDKKRAERLTVLARINRYENLSRVEKS 235 Score = 38.3 bits (89), Expect = 4e-05 Identities = 41/215 (19%), Positives = 72/215 (33%), Gaps = 30/215 (13%) Query: 87 EILSSRAALAKAE---AVHERAVQQARRIALLFKERAAPEVEN--EKAISSEREATADIE 141 +L +A V++ ++Q L KE + + + R+ T +I Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIG 312 Query: 142 ARKADLARAQLNLDYATVRAPIDGIVGAAQV-SEGAIAVQNETSLVTIQQLDPIYADFTQ 200 +LA+ + + +RAP+ V +V +EG + ET +V + + D + Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALV 372 Query: 201 SVSELNRLRRAFESGDLDQIAP-DAIKVRLVLDDGTPYA-IPGK--LLFSDAKVDAATGQ 256 D+ I +++ T Y + GK + DA D G Sbjct: 373 QNK------------DIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGL 420 Query: 257 VTL--------RGEFANPKRELLPGMYVRVRIEQG 283 V N L GM V I+ G Sbjct: 421 VFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTG 455
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1045 bits (2704), Expect = 0.0 Identities = 517/1034 (50%), Positives = 692/1034 (66%), Gaps = 5/1034 (0%) Query: 1 MPSFFIDRPIFAWVVALFICLIGAIAIPLLAVAQYPIIAPPSISISTSYPGASPENLYNS 60 M +FFI RPIFAWV+A+ + + GA+AI L VAQYP IAPP++S+S +YPGA + + ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTRLIEEELNGASGILNFESTSDSLGQVEITANFVPGTSTNDASVEVQNRLKRVEARLPR 120 VT++IE+ +NG ++ STSDS G V IT F GT + A V+VQN+L+ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 AVIQQGILVEEASAAVLQIITLQSTDGSLDEVGLGDFMIRNVLGEIRRIPGVGRATLYST 180 V QQGI VE++S++ L + S + + + D++ NV + R+ GVG L+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 ERSLRVWLDPAKLIGYGLTADDVTKSIGAQNAQVSSGSIGAEPATTVQRTSALVLVKGQL 240 + ++R+WLD L Y LT DV + QN Q+++G +G PA Q+ +A ++ + + Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 DSPDEFGAIILRANSDGSTVRLRDVARIEIGGLSYQFNTRLNGKPTAGLSVLLSPSGNAL 300 +P+EFG + LR NSDGS VRL+DVAR+E+GG +Y R+NGKP AGL + L+ NAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 ATASAVDAKMKELSRFFPSNIAYEIPYDITPVVKASIKRVLMTLVEAVVLVFVVMFLFLQ 360 TA A+ AK+ EL FFP + PYD TP V+ SI V+ TL EA++LVF+VM+LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NIRYTIIPTIVVPVALLGTCATLMLVGYSINMLTMFGMVLAVGILVDDAIVVVENVERIM 420 N+R T+IPTI VPV LLGT A L GYSIN LTMFGMVLA+G+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 GEEGLSPKEATRKAMGQITGAIIGITLVLMAVFVPMAFFPGSVGIIYRQFSVTMVAAIGF 480 E+ L PKEAT K+M QI GA++GI +VL AVF+PMAFF GS G IYRQFS+T+V+A+ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SALLALSLTPALCATLLKPVQAGHGHAKTGVFGWFNRFMDFSRTKYTGVVGGALKRTGRL 540 S L+AL LTPALCATLLKPV A H K G FGWFN D S YT VG L TGR Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 MMIYAIFIVGLSFAFIQLPGGFLPVDDQGFITTDVQTPADSSYARTQAAVEAVEKYLAKR 600 ++IYA+ + G+ F++LP FLP +DQG T +Q PA ++ RTQ ++ V Y K Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 601 E--GIEDVTFLTGFSYAGQGVNTAQAFISLKDWSER-GKHDSAAALVADINRDLASLRDA 657 E +E V + GFS++GQ N AF+SLK W ER G +SA A++ +L +RD Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 658 KITALQPPPIDNLGNSSGFSFRLQDRGQKGYTALVAAADQLIAEANASPV-LQKVYVEGL 716 + P I LG ++GF F L D+ G+ AL A +QL+ A P L V GL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 717 PQGPQVNLMIDREKAGAFGVTFEDINNTISTNLGSNYVNDFPNRGRMQRVVVQADRISRM 776 Q L +D+EKA A GV+ DIN TIST LG YVNDF +RGR++++ VQAD RM Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 777 NADDILNYSVKNAKGQLVPFSSFATVQWAKGPTQIAGFNYYPAIRISGEAKPGFTSGDAL 836 +D+ V++A G++VPFS+F T W G ++ +N P++ I GEA PG +SGDA+ Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 837 NEMERLAAKLPRGFGYEWTGQSLQEKLSGSQAPLLLGLSALVVFLCLAALYESWTIPLAV 896 ME LA+KLP G GY+WTG S QE+LSG+QAP L+ +S +VVFLCLAALYESW+IP++V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 897 LLTVPLGILGAVVAANLRGLSNDVYFTVALITIIGLAAKDAILIIEFAKDL-RAHGKPLV 955 +L VPLGI+G ++AA L NDVYF V L+T IGL+AK+AILI+EFAKDL GK +V Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 956 AATIEACSLRFRPIIMTGLAFVCGVLPMSMATGAGGASQQALGTNVMGGMIAVVILALLM 1015 AT+ A +R RPI+MT LAF+ GVLP++++ GAG +Q A+G VMGGM++ +LA+ Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1016 VPVFFVSVQRVLAG 1029 VPVFFV ++R G Sbjct: 1021 VPVFFVVIRRCFKG 1034 Score = 89.9 bits (223), Expect = 3e-20 Identities = 84/512 (16%), Positives = 177/512 (34%), Gaps = 34/512 (6%) Query: 540 LMMIYAIFIVGLSFAFIQLPGGFLPVDDQGFITTDVQTPADSSYARTQAAVEAVEKYLAK 599 ++ + + G A +QLP P ++ P + + +E+ + Sbjct: 13 WVLAIILMMAGA-LAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNMNG 71 Query: 600 REGIEDVTFLTGFSYAGQGVNTAQAFISLKDWSERGKHDSAAALVADINRDLASLRDAKI 659 + + ++ + I+L + G D A V + L Sbjct: 72 IDNLMYMS--------STSDSAGSVTITLT--FQSGT-DPDIAQV-QVQNKLQLATPLLP 119 Query: 660 TALQPPPIDNLGNSSGFSFRLQDRGQKGYTALVAAADQLIAEANASPVLQKVYVEGLPQ- 718 +Q I +SS + T +D +N L ++ G Q Sbjct: 120 QEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDY--VASNVKDTLSRLNGVGDVQL 177 Query: 719 -GPQVNLMI--DREKAGAFGVTFEDINNTISTN---LGSNYVNDFPNRGRMQRVVVQADR 772 G Q + I D + + +T D+ N + + + + P Q + Sbjct: 178 FGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQ 237 Query: 773 ISRMNADDILNYSVK-NAKGQLVPFSSFATVQW-AKGPTQIAGFNYYPAIRISGEAKPGF 830 N ++ +++ N+ G +V A V+ + IA N PA + + G Sbjct: 238 TRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGA 297 Query: 831 ----TSGDALNEMERLAAKLPRGFGYEW---TGQSLQEKLSGSQAPLLLGLSALVVFLCL 883 T+ ++ L P+G + T +Q + L ++VFL + Sbjct: 298 NALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEA--IMLVFLVM 355 Query: 884 AALYESWTIPLAVLLTVPLGILGAVVAANLRGLSNDVYFTVALITIIGLAAKDAILIIE- 942 ++ L + VP+ +LG G S + ++ IGL DAI+++E Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 943 FAKDLRAHGKPLVAATIEACSLRFRPIIMTGLAFVCGVLPMSMATGAGGASQQALGTNVM 1002 + + P AT ++ S ++ + +PM+ G+ GA + ++ Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 1003 GGMIAVVILALLMVPVFFVSVQRVLAGDREKA 1034 M V++AL++ P ++ + ++ + + Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHEN 507
>ENTEROVIROMP#Enterobacterial virulence outer membrane protein signature. Length = 171 Score = 27.2 bits (60), Expect = 0.020 Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 94 GRSTSTPAYAINGGVEFKPASNVSLSLGFSYAGQSSDRVDS 134 TS ++ G++F P NV+L + + S V + Sbjct: 122 KHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGT 162
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 37.6 bits (87), Expect = 4e-05 Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 1/61 (1%) Query: 27 TPPALQPPPAEKPRPAEKPAEKAAEKPKAPAAAAKKPAPAPSAKPAAPAPAPTQQPAAND 86 P A+QPPP P E E E PK +KP P P KP + Sbjct: 62 PPQAVQPPPEPVVEP-EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKP 120 Query: 87 P 87 Sbjct: 121 V 121 Score = 35.0 bits (80), Expect = 3e-04 Identities = 18/57 (31%), Positives = 23/57 (40%) Query: 28 PPALQPPPAEKPRPAEKPAEKAAEKPKAPAAAAKKPAPAPSAKPAAPAPAPTQQPAA 84 PP P EKP+P KP K +K + P K P++ APA A Sbjct: 86 PPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTA 142 Score = 32.6 bits (74), Expect = 0.002 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 6/76 (7%) Query: 9 LVAAFVVMSAGARAQISLTPPALQPPPAEKPRPAEKPAEKAAEKPKAPAAAAKKPAPAPS 68 +VA + S ++ P QP PA+ +A + P P +P P P Sbjct: 28 VVAGLLYTSVHQVIEL---PAPAQPISVTMVAPADLEPPQAVQPPPEPVV---EPEPEPE 81 Query: 69 AKPAAPAPAPTQQPAA 84 P P AP Sbjct: 82 PIPEPPKEAPVVIEKP 97 Score = 32.3 bits (73), Expect = 0.002 Identities = 16/75 (21%), Positives = 22/75 (29%) Query: 14 VVMSAGARAQISLTPPALQPPPAEKPRPAEKPAEKAAEKPKAPAAAAKKPAPAPSAKPAA 73 V + P + PP E P EKP K KPK + + Sbjct: 66 VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRP 125 Query: 74 PAPAPTQQPAANDPN 88 +P PA + Sbjct: 126 ASPFENTAPARPTSS 140 Score = 32.3 bits (73), Expect = 0.002 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 29 PALQPPPAEKPRPAEK-PAEKAAEKPKAPAAAAKKPAPAPSAKPAAPAPAPTQQPAA 84 +P P KP+P +K K KP A+ AP+ ++ A A T +P Sbjct: 95 EKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVT 151 Score = 30.7 bits (69), Expect = 0.006 Identities = 12/51 (23%), Positives = 13/51 (25%) Query: 28 PPALQPPPAEKPRPAEKPAEKAAEKPKAPAAAAKKPAPAPSAKPAAPAPAP 78 P P K K K E A PA S+ A P Sbjct: 99 PKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKP 149
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 40.4 bits (94), Expect = 5e-06 Identities = 21/73 (28%), Positives = 29/73 (39%) Query: 97 VTETDAAPEPKPKPEKPVEKKPDPPKPVAEKKPDPPKPAPAEKPKPEEKKPDPFNPDQIA 156 VT A P+ +P + P+P E P+PPK AP KP+ K P + Sbjct: 47 VTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 106 Query: 157 SVLNKDKPKPPKP 169 K KP + Sbjct: 107 QEQPKRDVKPVES 119 Score = 37.3 bits (86), Expect = 4e-05 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 6/105 (5%) Query: 92 VDTKQVTETDAAPEPKPKPEKPVEKKPDPPKPVAEKKPDP-PKPAPAEKPKPEEKK---- 146 V + PEP+P PE P E KP + KP P P E+PK + K Sbjct: 61 VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Query: 147 -PDPFNPDQIASVLNKDKPKPPKPQQQADATPPEPKHKSERKFDA 190 PF A + + + A+ P +++ ++ A Sbjct: 121 PASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPA 165 Score = 32.7 bits (74), Expect = 0.002 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 8/79 (10%) Query: 97 VTETDAAPEPKPKPEKPVEKKPDPPKPVAEKKPDP-----PKPAPAEKPKPEEKKPDPFN 151 VT D P +P +P+P + P KP P KPKP KP Sbjct: 50 VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP---KPVKKV 106 Query: 152 PDQIASVLNKDKPKPPKPQ 170 +Q + + +P P Sbjct: 107 QEQPKRDVKPVESRPASPF 125 Score = 31.5 bits (71), Expect = 0.003 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 9/77 (11%) Query: 114 VEKKPDPPKPVA---------EKKPDPPKPAPAEKPKPEEKKPDPFNPDQIASVLNKDKP 164 V + P P +P++ E P E +P P P + V+ K KP Sbjct: 35 VIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 94 Query: 165 KPPKPQQQADATPPEPK 181 KP + +PK Sbjct: 95 KPKPKPKPVKKVQEQPK 111
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 41.0 bits (96), Expect = 1e-06 Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 1 MDALDNVDYRLALTADDKDEIYRLRYRAYL-REGAILPSASERVTDQYDDLPNSFIFGVY 59 M + +V++ L L+ E++ LR + R + DQYD+ +++FG+ Sbjct: 1 MLEIFDVNHTL-LSETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGIK 59 Query: 60 VDGELYSSIRISVLNAQWRRSLSSDMFADLLHPELDRGKVIIDPTRFVADYEKARSF 116 D + S+R + ++ ++ F + G ++ +RF D +A+ Sbjct: 60 -DNTVICSLRF--IETKYPNMITGTFFPYFKEINIPEGN-YLESSRFFVDKSRAKDI 112
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 120 bits (301), Expect = 1e-35 Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 12/154 (7%) Query: 6 LSMGACANKSLTDANAMAGGAAAPGSQ-QDFVVNVGDRVFFESDQTDLTPQAIATLEKQA 64 LS+G +A + A AP + Q + V F ++ L P+ A L++ Sbjct: 183 LSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLY 242 Query: 65 QWLQSY--PRYSFTIEGHADERGTREYNIALGARRAQSVRNFLVSRGIDQSRMRTISYGK 122 L + S + G+ D G+ YN L RRAQSV ++L+S+GI ++ G+ Sbjct: 243 SQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGE 302 Query: 123 ERPVA--VCND-------ISCWSQNRRAVTVLNA 147 PV C++ I C + +RR + Sbjct: 303 SNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKG 336
>PERTACTIN#Pertactin signature. Length = 922 Score = 31.2 bits (70), Expect = 0.006 Identities = 36/128 (28%), Positives = 45/128 (35%), Gaps = 12/128 (9%) Query: 76 AAPAAQPTAAAPPPPTQIAPSYSQPAQPAYGQPQYGQQQPAYPQQPPPSYPPAQAAAPAP 135 A PA +P P P P QP QP PQ Q+QP P PP+ AAA A Sbjct: 567 APPAPKPAPQPGPQPGPQPPQPPQPPQPP-QPPQPPQRQPEAPAPQPPAGRELSAAANAA 625 Query: 136 ITQDPPAAGGVRRRGDAFDPSQNPTAPGAPQALGGGALPIQPGGGQPAGRPAGDPAGVAN 195 + GGV + N + G L + P G GR + N Sbjct: 626 VN-----TGGVGLASTLWYAESNALSKRL------GELRLNPDAGGAWGRGFAQRQQLDN 674 Query: 196 AGAGRYPQ 203 R+ Q Sbjct: 675 RAGRRFDQ 682
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 9e-04 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 18/82 (21%) Query: 209 VLLVGPPGTGKTLIARAV---AGEANVPFFT-----ISGSDFVEMFVGV------GASRV 254 +++ G GTGK L+ARA+ N PF I G GA Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR 222 Query: 255 RD-MFEQAKKNAPCIIFIDEID 275 FEQA+ +F+DEI Sbjct: 223 STGRFEQAEGGT---LFLDEIG 241
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.0 bits (150), Expect = 7e-14 Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 9/196 (4%) Query: 12 RLAARRSAILAAAREAAAEGGMSAVQIAPVAVRANVAAGTVYRYFPSKADLISELIAEVS 71 R IL A ++ G+S+ + +A A V G +Y +F K+DL SE+ Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 72 RDELAAVRRAADAAPGPSSALAAAVSTVAVHVLSQRKLAWGILAEPVDVD--------VT 123 + PG ++ + + + ++ V Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 124 ASRIASRREIVGEIASRIDAAVRAGHLPAQ-DTQLAATALLGALHEALVGPLATDTLEDP 182 ++ E I + + A LPA T+ AA + G + + L D Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDL 187 Query: 183 AKLRDTVQAVTLLALR 198 K A+ L Sbjct: 188 KKEARDYVAILLEMYL 203
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 40.7 bits (95), Expect = 7e-06 Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 7/135 (5%) Query: 184 WTRVAAGLGASLLAAAGLWFVLAREPASAPSSQPKTAELSEP--LPDRAKIEPPPSPVAG 241 W + + + A L+ + + +QP + + P L ++PPP PV Sbjct: 16 WPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVE 75 Query: 242 LQPVATATAPDPRPSADASADAVTSETPPTQVQTQVQAQVQAQVQPQVEPQVQARAEAQV 301 +P P P P +A + P + Q + V+P A Sbjct: 76 PEPEP---EPIPEPPKEAPVVIEKPKPKP--KPKPKPVKKVEQPKRDVKPVESRPASPFE 130 Query: 302 QSDTRVADATPAVAP 316 + ++ A A Sbjct: 131 NTAPARPTSSTATAA 145
>PERTACTIN#Pertactin signature. Length = 922 Score = 30.8 bits (69), Expect = 0.017 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 11/128 (8%) Query: 82 RGGAMKASDNAPSMSKSVGNAMALADSKDVDAAKPKTADAPQSSTPASRLAAAFADSDPK 141 + G + ++ + +L +K A KP PQ + P Sbjct: 539 KDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPP 598 Query: 142 PKFLPAADLKAPPPASNKDLFGAAPSPVPGMRIGMYGEI----------KLGS-QQNPAA 190 + AP P + ++L AA + V +G+ + +LG + NP A Sbjct: 599 QPPQRQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGELRLNPDA 658 Query: 191 NGQWQNGF 198 G W GF Sbjct: 659 GGAWGRGF 666
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 224 bits (571), Expect = 2e-65 Identities = 149/669 (22%), Positives = 279/669 (41%), Gaps = 91/669 (13%) Query: 110 AVGNGFELNFENTPIATVAKVVLGDVLGVGYTIDPRIQGTVSLSSVRPVPKSDVVYVLEN 169 A F +F+ T I V + L IDP ++GT+++ S + + + Sbjct: 25 AAAEEFSASFKGTDIQEFINTVSKN-LNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLS 83 Query: 170 ALRLAGTALVRDNSGYRLIPLGEAVGAGNVDAPGATAEPGYGITMLPLQYVSAPTLLKLL 229 L + G+ +I + V L+ V + K Sbjct: 84 VLDV---------YGFAVINMNNGV----------------------LKVVRS----KDA 108 Query: 230 DSFALKPGTVRADPGRNVLLIQGTGAERRTAADAALSFDADWMRGQSVGIFPIENGNPEP 289 + A+ + A + ++ + + P+ N Sbjct: 109 KTAAVPVASDAAPGIGDEVVTR---------------------------VVPLTNVAARD 141 Query: 290 IVAELEKIMDTGDSGLGQNMVKFQAVNRMNAVMVISRKPALLRTAETWIKRLDTGSTLRN 349 + L ++ D G ++V ++ N V++++ + A+++ T ++R+D Sbjct: 142 LAPLLRQLNDNAGVG---SVVHYEPSN----VLLMTGRAAVIKRLLTIVERVDNAGD--R 192 Query: 350 SVHVYRVKYGEARQMARVLNEMFTGNSSAVADASSTD-LAPGSGSSSSSSSERLSAAGTT 408 SV + + A + +++ E+ S + S + +++ S ++ Sbjct: 193 SVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRI 252 Query: 409 ASTGFS----GASQANIGVVANRGFNGTPPPTQVGLDGGSEARASSAGGKPLM---DGVR 461 + A+Q N V+ + + +V S ++ KP+ + Sbjct: 253 IAMIKQLDRQQATQGNTKVIYLK-YAKASDLVEVLTGISSTMQSEKQAAKPVAALDKNII 311 Query: 462 ITPDVVNNTLLIYADRENYRIIEATLRQCDRPQLQVAIDATIAEVTLNDNLTYGVQAYLT 521 I N L++ A + +E + Q D + QV ++A IAEV D L G+Q Sbjct: 312 IKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWA-- 369 Query: 522 SKNLGLRPDQGSLLNTTSTSAPATVASAAGTITNAFLSRAFPGFNFLIGSESQPS--AIL 579 +KN G+ S L ++ A A + GT++++ S A FN + Q + +L Sbjct: 370 NKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLAS-ALSSFNGIAAGFYQGNWAMLL 428 Query: 580 SALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVVNTIDYRNTGI 639 +AL + T +L+ PS+V +DN AT VG +VPV TGS T T+ + + NT++ + GI Sbjct: 429 TALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQT--TSGDNIFNTVERKTVGI 486 Query: 640 ILRVAPRVNENGNVRLEIEQEISNV---SPQTANSLTPTVAQRKVKSSVAVASGQTVLLA 696 L+V P++NE +V LEIEQE+S+V + T++ L T R V ++V V SG+TV++ Sbjct: 487 KLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVG 546 Query: 697 GLISETHQGTRTGLPGVDQIPGFGDLFSNNDRSRGRTELIIFIRPQIIRDGTDAHYVAEE 756 GL+ ++ T +P + IP G LF + + + L++FIRP +IRD + + Sbjct: 547 GLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSG 606 Query: 757 LRSKLRGTI 765 + Sbjct: 607 QYTAFNDAQ 615
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 192 bits (490), Expect = 1e-59 Identities = 99/389 (25%), Positives = 175/389 (44%), Gaps = 3/389 (0%) Query: 3 GTISAATAKDVIDRIEYLRLLPIETIEEKIGSSVRRDMAAWLGGPGPGG---VTTFTRDL 59 GT A +A+ + L+P+ E + L + TR L Sbjct: 18 GTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKIRLSTSDLALLTRQL 77 Query: 60 ALLLKAGARLEDALELLAGDADIGRLRAIVSRLRSSILAGESFADALAHHPTQFPPMYLA 119 A L+ A LE+AL+ +A ++ L +++ +RS ++ G S ADA+ P F +Y A Sbjct: 78 ATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFPGSFERLYCA 137 Query: 120 LVRVGEASGSLDHVLDVLGAERARAEAMRRKLGDALQYPLFVLVAAFLVMLFFFIVVLPQ 179 +V GE SG LD VL+ L + + MR ++ A+ YP + V A V+ VV+P+ Sbjct: 138 MVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVAIAVVSILLSVVVPK 197 Query: 180 FSTVLRDFGARTDAAITTFLDISEFLRSNGAAIALLGSGIVAAGILLLGRASIRGAVIAR 239 + + +S+ +R+ G + L A ++L + R + R Sbjct: 198 VVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRVMLRQEKRRVSFHRR 257 Query: 240 LCRLPGLAAVFGSYRTSVFCRNLAILLGSGLTLTATLRILVDIMSVTGDGAVWRAAADRV 299 L LP + + T+ + R L+IL S + L +RI D+MS A D V Sbjct: 258 LLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMSNDYARHRLSLATDAV 317 Query: 300 RQGGKLSEALTSADILPAMATRMIRIGEETGQLPVLAGRIAEFYEAKLQRSLDRIVGIVG 359 R+G L +AL + P M MI GE +G+L + R A+ + + + +G+ Sbjct: 318 REGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQDREFSSQMTLALGLFE 377 Query: 360 PAAIILISTVVGGLIVSVMTALLSVTQLV 388 P ++ ++ VV ++++++ +L + L+ Sbjct: 378 PLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 131 bits (331), Expect = 5e-42 Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 7/139 (5%) Query: 21 RDDHESGFTLVEMLVVIAIIGMIMGLIGPRVLTSLNESRVKTARIQIQSFSSALDLFYLD 80 D + GFTL+E++VVI IIG++ L+ P ++ + ++ + A I + +ALD++ LD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 81 TGRYPTSSEGLAALVRPAASIPG---WAGPYLKGGNVPSDPWSHPYVYRAPGQHVPYEIV 137 YPT+++GL +LV P + +P+DPW + YV PG+H Y+++ Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYI-KRLPADPWGNDYVLVNPGEHGAYDLL 121 Query: 138 SYGSDGQEGGVDLAADISS 156 S G DG+ G D DI++ Sbjct: 122 SAGPDGEMGTED---DITN 137
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 34.1 bits (78), Expect = 1e-04 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 5/59 (8%) Query: 4 RADHAQSGFTLIEALAAMVLMGLLVSALALLTAQWLPNWDRGLHRIQRSESVSV--ALD 60 RA Q GFTL+E + +V++G+L +L+ + N ++ + S+ V++ ALD Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVL---ASLVVPNLMGNKEKADKQKAVSDIVALENALD 57
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 50.3 bits (120), Expect = 3e-09 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 4/123 (3%) Query: 223 LALSPDDTIALINRGETFLTLKRNADALHDFDRVIALDPQFALGWLGRANVLMLNKQVSE 282 +S D L + + DA F + LD + +LG Q Sbjct: 29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88 Query: 283 ALEACQRALAIEPNSAKALNQIGQCHALLGDAQAAVACFDAALAI---DPADEIALESRI 339 A+ + ++ + +C G+ A + A + + L +R+ Sbjct: 89 AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKE-LSTRV 147 Query: 340 FSL 342 S+ Sbjct: 148 SSM 150 Score = 35.7 bits (82), Expect = 3e-04 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 3/106 (2%) Query: 24 DDVADLFAQASAFHRSGDLAKAQAGYRKILKKRPNHFGALYQLGLSEHQSRKSDEAERLL 83 D + L++ A ++SG A ++ + LG + D A Sbjct: 34 DTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 93 Query: 84 KRALLVEPRSVEARYARAVVLSALQRDSEALSCFD---DLLALKPD 126 +++ + + A L +EA S +L+A K + Sbjct: 94 SYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTE 139 Score = 34.9 bits (80), Expect = 4e-04 Identities = 16/103 (15%), Positives = 32/103 (31%) Query: 157 INPQRLDVLINKGEALHYLGRFVDAIACYDQLLAAHPTHLAALINRGCAFKDLRRADEAI 216 I+ L+ L + + G++ DA + L + G + + + D AI Sbjct: 31 ISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI 90 Query: 217 ADFDRALALSPDDTIALINRGETFLTLKRNADALHDFDRVIAL 259 + + + + E L A+A L Sbjct: 91 HSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133
>cloacin#Cloacin signature. Length = 551 Score = 29.3 bits (65), Expect = 0.009 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 42 PALPVPGAHLVACSADDAGKILAQIQGVLPAVNVFFEFGRPGIAL 86 PAL PGA +A S AG + A I ++ A+ F+FG G+AL Sbjct: 93 PALSTPGAGGLAVSIS-AGALSAAIADIMAALKGPFKFGLWGVAL 136
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 83.6 bits (206), Expect = 4e-21 Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 2/194 (1%) Query: 3 AIDKAAAAITGAASGIGRALALEMAARGCDLALADRDEAGLASVAAELAASGRKVTMHRL 62 I+ A ITGAA GIG A+A +A++G +A D + L V + L A R Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 63 DVSDASAIAQFAADATAAHPALNIVVNNAGVALFGAFHEIEQAEIEWLFNINFWGVVHGT 122 DV D++AI + A ++I+VN AGV G H + E E F++N GV + + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 123 RAFLPHLSRQPEAHIVNLSSIFGIIAPPGQSAYAAAKFAVRGFSESLRHELATANSPVKL 182 R+ ++ + IV + S + +AYA++K A F++ L ELA N ++ Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN--IRC 182 Query: 183 SVVHPGGVATAIAR 196 ++V PG T + Sbjct: 183 NIVSPGSTETDMQW 196
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 58.3 bits (141), Expect = 4e-13 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 8/132 (6%) Query: 8 RATALIVEDDPTQREMISLLLEESEYDVIACESAEAAELVLNRPGNRVVLLMTDVNLAGR 67 AT L+ +DD R +++ L + YDV +A + +V+ TDV + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVV--TDVVMPD- 59 Query: 68 MSGVELAHIARARHPHINIVVTSG-----RPLSQPLPGDAKFWAKPWAPLDVLREAEVSL 122 + +L + P + ++V S + G + KP+ +++ +L Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 123 ERAPELQRRQAE 134 + + Sbjct: 120 AEPKRRPSKLED 131
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.7 bits (233), Expect = 2e-24 Identities = 42/141 (29%), Positives = 63/141 (44%) Query: 2 RILLVEDTPEIGAAVTSRFERIGYAVDWEKDGRTASELIEVQTYDLIVLDVMLPNMDGFA 61 IL+ +D I + R GY V + T I DL+V DV++P+ + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLKHLRKRGLRTPVLVLTARSAVDDRIGALDLGADDYLIKPFDYRELEARARALLRRAAG 121 +L ++K PVLV++A++ I A + GA DYL KPFD EL L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 QSDNLLTLGPLVIDRAGRTAS 142 + L + GR+A+ Sbjct: 125 RPSKLEDDSQDGMPLVGRSAA 145
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.043 Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 52 VLLGPSGCGKSTLLKAIGG 70 VL G G GKSTL+ + G Sbjct: 600 VLEGTGGIGKSTLINTLVG 618
>PF06580#Sensor histidine kinase Length = 349 Score = 31.4 bits (71), Expect = 0.006 Identities = 13/104 (12%), Positives = 34/104 (32%), Gaps = 28/104 (26%) Query: 354 LIENALRFATR-----CTVRV---LPDRAVVIAIDDDGPGIPPNARNAVFEPFFRLENSR 405 L+EN ++ + + + V + +++ G N + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 406 SRSTGGSGLGLAIVKQ-IADAHGARLDLS-TSPEGGLRVRIAFP 447 +G GL V++ + +G + + +G + + P Sbjct: 310 -----STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 1e-22 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 6/134 (4%) Query: 3 SRPHLLIIEDDIEIRSLLRDHLAREGFRVD-VGDGGAALDRFRNTFGDPDLVVLDIMLPG 61 + +L+ +DD IR++L L+R G+ V + GD DLVV D+++P Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPD 59 Query: 62 EDGLSICRRLRAA-SRVPILMLTAKGDEIDRIVGLEMGADDYLPKPFSPRELVARIRAIL 120 E+ + R++ A +P+L+++A+ + I E GA DYLPKPF EL+ I L Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 121 --RRAEPAPLENRR 132 + P+ LE+ Sbjct: 120 AEPKRRPSKLEDDS 133
>cloacin#Cloacin signature. Length = 551 Score = 38.2 bits (88), Expect = 4e-05 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 5/48 (10%) Query: 256 GPGRRGGWSGGSSSSGWSS-----GSSSDSGSFSGGGGSFGGGGASGS 298 GP G G S SGWSS G S SG GGG G GG +G+ Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 28.6 bits (64), Expect = 0.049 Identities = 9/25 (36%), Positives = 11/25 (44%) Query: 142 RWWLAAGLFGGLALLSKFTVVMLLP 166 W+ AG+ G LA V L P Sbjct: 34 LAWVVAGVAGALATAGVVAVAALTP 58
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 71.2 bits (174), Expect = 1e-16 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 27/235 (11%) Query: 3 VTGKIVVVTGGARGIGKALCEAFARDGAAKVIVADLDEAGAKAVADSIGGAS-----FRC 57 + GKI +TG A+GIG+A+ A G A + D + + V S+ + F Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQG-AHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 58 DVSQEADIKHLIEETERQFGPIALFCSNAGIGGGFDPLSVNVGGT---SDEPWARSWAIH 114 DV A I + ER+ GPI + + AG+ + G SDE W +++++ Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGV--------LRPGLIHSLSDEEWEATFSVN 116 Query: 115 VMAHVWAARHLIPRYKARGGGYFLNTISAAGLLSQVGSAPYSTTKHAAVGFAENLAISHK 174 A+R + R G + S + + A Y+++K AAV F + L + Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 175 VDNIKVSILCPQGVDTDMLRAIPKGPQSGDGDLTPEQVAQDVLKGLAEESFLILP 229 NI+ +I+ P +TDM ++ E A+ V+KG E +P Sbjct: 177 EYNIRCNIVSPGSTETDMQWSL----------WADENGAEQVIKGSLETFKTGIP 221
>cloacin#Cloacin signature. Length = 551 Score = 30.5 bits (68), Expect = 0.022 Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 23/142 (16%) Query: 111 GAPALAAPGKSGPPASFGFAAFQPARGAVVAAPEAPR-----ASAAIQAVPPQIAAAAP- 164 G PAL+ PG G S A A ++AA + P A +P QIA P Sbjct: 91 GFPALSTPGAGGLAVSISAGALSAAIADIMAALKGPFKFGLWGVALYGVLPSQIAKDDPN 150 Query: 165 -----VAQRPA-TAEQTVAAAQP---AAVLRNRDVLPD-----RNLDTVKPPPVT---PE 207 V PA ++ ++ P A V N V+ D +N+ V P++ + Sbjct: 151 MMSKIVTSLPADDITESPVSSLPLDKATVNVNVRVVDDVKDERQNISVVSGVPMSVPVVD 210 Query: 208 AKPYDPTGITVGSFLVKPAVEI 229 AKP + G+ S P + I Sbjct: 211 AKPTERPGVFTASIPGAPVLNI 232
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.5 bits (68), Expect = 0.021 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%) Query: 450 QKVNADRQALEKARQAAQQATQDAQEAAE--QVERANTAANQAALAAAQAKAQTTAAAFN 507 +++ ++ALEK ++A +QA + ++ E + ERA AN L A + Q + N Sbjct: 139 KELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKN 198 Query: 508 QANATLNADNQALTQARESGEQQEQALRAAAQQQIQAGYTAAQQATQ 554 + L Q + QEQA A +Q + A++A + Sbjct: 199 LSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVR 245
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.004 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 30/117 (25%) Query: 195 DAMMLRRILQNLLANALRY----TRRGGV--VMGCRRGPGPGRVRIEVRDTGPGIPKPQQ 248 D + ++Q L+ N +++ +GG + G + G V +EV +TG K + Sbjct: 252 DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDN---GTVTLEVENTGSLALKNTK 308 Query: 249 EAIFLEFQRGQPSTEDQAGFGLGLSIVRRFAKAL---DHQVRLASRIDHGSTFTLEL 302 E G GL VR + L + Q++L+ + + + Sbjct: 309 E-----------------STGTGLQNVRERLQMLYGTEAQIKLSEK-QGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.2 bits (151), Expect = 5e-13 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 8/164 (4%) Query: 49 ARLLIIEDHPLFREALENAISAALPDAEMLQATSIDTAIGLLSPPPGVDLILLDLSTPGT 108 A +L+ +D R L A+S A ++ ++ T ++ G DL++ D+ P Sbjct: 4 ATILVADDDAAIRTVLNQALSRA--GYDVRITSNAATLWRWIAAGDG-DLVVTDVVMPDE 60 Query: 109 TGLSGVIRLRKSAPRTPILVVSAHQDPRLVAYVLSLGVAGYVSKSS----TKEQLAHAIN 164 + R++K+ P P+LV+SA G Y+ K + A+ Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 165 SVLRGDVHVPGSARSAEARRTRLPA-QDLLKRLHDLTPQQLRVL 207 R + ++ R A Q++ + L L L ++ Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLM 164
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.8 bits (176), Expect = 2e-16 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 8/161 (4%) Query: 29 LIIDDHPLFREALGNAVRLAHPDAQIFDALSIADALNILAAQSEIDLALLDLTLPDATGF 88 L+ DD R L A+ A + + A +AA + DL + D+ +PD F Sbjct: 7 LVADDDAAIRTVLNQALSRA--GYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDENAF 63 Query: 89 SGFLRLRAAHPRLPVAIVSSEEDQHVVREALALGAAGYLPKSTSKRELTAAIERVLSGSI 148 R++ A P LPV ++S++ +A GA YLPK EL I R L+ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 149 SVPKDLLPAADRDGN--GSSRALQ---DRVAQLTPQQLRVL 184 P L + G S A+Q +A+L L ++ Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLM 164
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 34.5 bits (79), Expect = 3e-04 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 153 ETAERSYRALTEIDPRNPEYHYGLGLFYKTRGRFADGLIANQVASSL-LDEPVQSYQWNL 211 E A + ++AL +D + + GLG + G++ + + + + + EP + + Sbjct: 53 EDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPF--HA 110 Query: 212 GIC 214 C Sbjct: 111 AEC 113
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 50.4 bits (120), Expect = 9e-09 Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 14/249 (5%) Query: 94 QLADLGKKTDAINRMKIELGEKNAAIFALEAREKALKDQLRATEEEFAAKTEALRAAEQA 153 + ADL K + K + A +A A K L E + A A + Sbjct: 121 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 180 Query: 154 LKEKQAELVRLTAELTDKSMLADSRQVELVSVKTQVEELRTRVAEAEKEFSATQARLALE 213 L+ ++A L AEL A + + +++ L A + + L Sbjct: 181 LEAEKAALEARQAELEKALEGAMN---FSTADSAKIKTLEAEKAALAARKADLEKALEGA 237 Query: 214 RDESDTATKALNDARARVENLSQRVTELDRQLIVQVKEAEMLASRVADLEGRLSTQGKLL 273 + S + + A L R EL++ L + + ++++ LE Sbjct: 238 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE-------K 290 Query: 274 AERDFENNQLREANAAADRALKELREELAGHGSGKSAAFERLKSEKAALEEQLQAARDER 333 A + E L + + + LR +L A ++L++E LEEQ + + R Sbjct: 291 AALEAEKADLEHQSQVLNANRQSLRRDLD----ASREAKKQLEAEHQKLEEQNKISEASR 346 Query: 334 TKLQREMNA 342 L+R+++A Sbjct: 347 QSLRRDLDA 355 Score = 44.3 bits (104), Expect = 8e-07 Identities = 39/263 (14%), Positives = 86/263 (32%) Query: 87 LKNKATGQLADLGKKTDAINRMKIELGEKNAAIFALEAREKALKDQLRATEEEFAAKTEA 146 +K + L K ++ L + N + + K + + E A+K + Sbjct: 58 RADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQE 117 Query: 147 LRAAEQALKEKQAELVRLTAELTDKSMLADSRQVELVSVKTQVEELRTRVAEAEKEFSAT 206 L A + L++ + + + K ++ + L + K +E+ SA Sbjct: 118 LEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK 177 Query: 207 QARLALERDESDTATKALNDARARVENLSQRVTELDRQLIVQVKEAEMLASRVADLEGRL 266 L E+ + L A N S + + L + + + Sbjct: 178 IKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGA 237 Query: 267 STQGKLLAERDFENNQLREANAAADRALKELREELAGHGSGKSAAFERLKSEKAALEEQL 326 + + + A A L++ E + SA + L++EKAALE + Sbjct: 238 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEK 297 Query: 327 QAARDERTKLQREMNAIQQQAES 349 + L ++++ ++ Sbjct: 298 ADLEHQSQVLNANRQSLRRDLDA 320 Score = 42.0 bits (98), Expect = 3e-06 Identities = 61/356 (17%), Positives = 124/356 (34%), Gaps = 11/356 (3%) Query: 60 AEIQADKDQLRAEFAMSARRLEMSVDALKNKATGQLADLGKKTDAINRMKIELGEKNAAI 119 A +AD ++ + + L+ + A + A+ +A I Sbjct: 154 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 213 Query: 120 FALEAREKALKDQLRATEEEFAAKTEALRAAEQALKEKQAELVRLTAELTDKSMLADSRQ 179 LEA + AL + E+ A +K +AE L A + + Sbjct: 214 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 273 Query: 180 VELVSVKTQVEELRTRVAEAEKEFSATQARLALERDESDTATKALNDARARVENLSQRVT 239 + +++ L A E E + + + + + + L+ +R + L Sbjct: 274 NFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQ 333 Query: 240 ELDRQLIVQVKEAEMLASRVADLEGRLSTQGKLLAERDFENNQLREANAAADRALKELRE 299 +L+ Q ++ EA + R DL+ + +L AE +L E N ++ + + LR Sbjct: 334 KLEEQN--KISEASRQSLR-RDLDASREAKKQLEAEHQ----KLEEQNKISEASRQSLRR 386 Query: 300 ELAGHGSGKSAAFERLKSEKAALEEQLQAARDERTKLQREMNAIQQQAESTWAQERMENA 359 +L A ++++ +L A +L+ +++ A+ E Sbjct: 387 DLDA----SREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAK 442 Query: 360 LLRERINDIAAEVAKLAMQIEGPNSTIEAMLASEPAAKPANANGAPATPAAAGGAP 415 L+E++ A E+AKL + T +A ++ A A P Sbjct: 443 ALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPM 498
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 32.0 bits (72), Expect = 0.002 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%) Query: 7 AQQAPPYQPPPQAAPPYQAAPAYPAAPPPQAAPAPRPAPGPD-SFNPD 53 + +AP QP P+ +P A P P P RP P PD NPD Sbjct: 319 SAEAPNAQPLPEVSPAENPA----NNPAPNENPGTRPNPEPDPDLNPD 362
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.0 bits (218), Expect = 3e-20 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 4/134 (2%) Query: 800 QTQSVLLVDDSPFFRNMLAPVLKSAGYKVRTAASAIEGLATLRSGHTFDIVVTDIEMPEM 859 ++L+ DD R +L L AGY VR ++A + +G D+VVTD+ MP+ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE 60 Query: 860 NGFEFAETIRADQNLHHLPVIAVSSLVSPAAIERGRQAGLYDYIAK-FDRPGLIAALKEQ 918 N F+ I+ + LPV+ +S+ + + + G YDY+ K FD LI + Sbjct: 61 NAFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 919 IEERARADAAKRAA 932 + E R + Sbjct: 119 LAEPKRRPSKLEDD 132
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 1e-22 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 5 LVVDDSSVIRKVARRILEGLDFQIVEAEDGEQALEICKRGLPDAVLLDWNMPVMDGYEFL 64 LV DD + IR V + L + + + G D V+ D MP + ++ L Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLL 66 Query: 65 GNLRRMPGGDAPKVVFCTTENDVAHIARALHAGANEYIMKPFDKD 109 +++ D P V+ + +N +A GA +Y+ KPFD Sbjct: 67 PRIKKA-RPDLP-VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.2 bits (146), Expect = 5e-12 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%) Query: 20 RVMVVDDSVVIRGMISRWISSEPDMVVAASLRTGLEAVNQIDRVNPDVAVLDIEMPELDG 79 ++V DD IR ++++ +S V S I + D+ V D+ MP+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITS--NAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 80 IAALPKLLAKKKNLAVIMASTLTRRNAEISFKALSLGAADYIPKP 124 LP++ + +L V++ S + KA GA DY+PKP Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQN--TFMTAIKASEKGAYDYLPKP 105
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.8 bits (69), Expect = 0.017 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Query: 491 ARLAQEARDRADRLSR-MQEVERRTRDVERRRREIEQQIETLKAQLASEEGEMELLNLES 549 A+ ++AR A+ + QE E+R +++ER + E E+Q++ +A+ L Sbjct: 133 AKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAA------LSE 186 Query: 550 SARDEQRSADRIALAQSRSAK 570 A+ + + +++ AQS K Sbjct: 187 EAKAVEIAQKKLSAAQSEVVK 207
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 42.9 bits (101), Expect = 5e-08 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 5/111 (4%) Query: 2 RILVAEDEGLIALELETVLQGFGCEVIGPVSRVAEVLREAERGDLDGALLDVNLRGEQIF 61 ILVA+D+ I L L G +V S A + R GD D + DV + E F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 AILPQLIAR--ELKIVITSGYDDATLFPPEFRG--LPRLAKPFDERALRAM 108 +LP++ +L +++ S + L KPFD L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.040 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 20/102 (19%) Query: 357 QAIV-NVLDNAFEVSRE--WVELVAERDGDQLLLSVSDRGPGFDPAMLAQLGRPYQSSKG 413 Q +V N + + + + L +D + L V + G Sbjct: 261 QTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK-------------NT 307 Query: 414 RPGRGLGLFLVVNVIRKLGG---GVSAWNHRGRGATVRLSLP 452 + G GL V ++ L G + +G+ + +P Sbjct: 308 KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV-NAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 110 bits (276), Expect = 6e-31 Identities = 23/128 (17%), Positives = 55/128 (42%) Query: 6 SLLIVEDDDGFARTLKRSFERRGYEAVIAASLEDVDEIIKDKTFGYAVVDLKLGGASGLV 65 ++L+ +DD L ++ R GY+ I ++ + I V D+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 CVEKLHAHDPEMLIVVLTGFASIATAVEAIKLGACHYLAKPSNTDDIEEAFRKAEGNAQV 125 + ++ P++ ++V++ + TA++A + GA YL KP + ++ +A + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 126 ALPERSTS 133 + Sbjct: 125 RPSKLEDD 132 Score = 51.4 bits (123), Expect = 3e-10 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 106 PSNTDDIEEAFRKAEGNAQVALPE---RSTSIKTLEWERIHQTLIDTDFNISEAARRLGM 162 S + +EE R+ + ALP + +E+ I L T N +AA LG+ Sbjct: 402 LSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGL 461 Query: 163 HRRTLARKLEK 173 +R TL +K+ + Sbjct: 462 NRNTLRKKIRE 472
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.4 bits (110), Expect = 1e-07 Identities = 22/187 (11%), Positives = 66/187 (35%), Gaps = 18/187 (9%) Query: 41 EADFGRREAQLKAAQEQIAQARAAIDQQVAAKL-------KAERAAIAQAEAERARQAVA 93 EAD + ++ L A+ + + + KL + +++ E R + Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIK 192 Query: 94 DEIGNRDRQLAELHQAIVSKDAKLADAQKAQAEMLRKQRELDEARRELDLTIETKVQENL 153 ++ Q + + K A+ A+ ++++R + + + + Sbjct: 193 EQFSTWQNQKYQKELNLDKKRAERLTVL-ARINRYENLSRVEKSRLDD---FSSLLHKQA 248 Query: 154 VAVRDKARLEAEEALRAKV----AEKETQIAGMQRQIEELRRKAEQGSQQLQGEALEIEL 209 +A K + +E + ++Q+ ++ +I + + + +Q + E L+ Sbjct: 249 IA---KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR 305 Query: 210 ESQLRAR 216 ++ Sbjct: 306 QTTDNIG 312 Score = 32.5 bits (74), Expect = 0.003 Identities = 15/142 (10%), Positives = 46/142 (32%), Gaps = 16/142 (11%) Query: 91 AVADEIGNRDRQLAELHQAIVSKDAKLADAQKAQAEMLRKQRELDEARRELDLTIETKVQ 150 ++ EI ++ + ++ A A+A + + Q L++ R ++ + Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 151 ENLVAVRDKARL----------------EAEEALRAKVAEKETQIAGMQRQIEELRRKAE 194 + + D+ E + + +KE + + + + + Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 195 QGSQQLQGEALEIELESQLRAR 216 + + E ++ S L + Sbjct: 225 RYENLSRVEKSRLDDFSSLLHK 246
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 481 bits (1240), Expect = e-155 Identities = 239/1047 (22%), Positives = 442/1047 (42%), Gaps = 69/1047 (6%) Query: 6 LSDWALEHRSLVWYFMIAFMAAGLFSYLHLGREEDPSFTIKTMLIQAKWPGASAEEMTRQ 65 ++++ + W I M AG + L L + P+ + + A +PGA A+ + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 66 VTERIEKKLEELPALDYTKSLTVPGQTTVFVNLLATTKARDVVPTWLQVRNLINDIKGDF 125 VT+ IE+ + + L Y S + + L D +QV+N + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTIT--LTFQSGTDPDIAQVQVQNKLQLATPLL 118 Query: 126 PSGVVGPG-FNDRFGDVFGNIYAFTSDG--LSQRQLRDRVEE-VRAKVLTVPNVGRVDIV 181 P V G ++ + + F SD +Q + D V V+ + + VG V + Sbjct: 119 PQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLF 178 Query: 182 GAQNEV-IYLEFSPRKVAALGIDQRTILNALQAQNAVSPSGVLQAGPE------RIAVRV 234 GAQ + I+L+ + + ++N L+ QN +G L P ++ Sbjct: 179 GAQYAMRIWLD--ADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 235 SGQFTSEESLKQINLRINDRFFP--LTDVATITRGYEDPPTSLFRFNGQPAIGLAIGMKA 292 +F + E ++ LR+N L DVA + G E+ + R NG+PA GL I + Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENY-NVIARINGKPAAGLGIKLAT 295 Query: 293 GANLLDFGEALKEEMTKVIADLPVGVGVHLVSDQPKIVEEAVGGFTKALYEAVIIVLAIS 352 GAN LD +A+K ++ ++ P G+ V D V+ ++ K L+EA+++V + Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 353 FVSLG-VRAGLVVAISIPLVLAITFLFMAYTGISLQRISLGALIIALGLLVDDAMIAVEM 411 ++ L +RA L+ I++P+VL TF +A G S+ +++ +++A+GLLVDDA++ VE Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 412 MVARLEVGDSLRKAATYVYTS-TAFPMLTGTLVTVAGFIPIGLNNSAAGEFTFTLFVVIA 470 + + K AT S ++ +V A FIP+ + G + I Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 471 VSLVVSWIVAVLFTPLLGVTIL-PASLPSHHAEGGRLTRMFRVM----------LNACMR 519 ++ +S +VA++ TP L T+L P S H +GG + + Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILG 535 Query: 520 YRWTTIIVTVLVFGLSVFGMRFVQQQFFPSSDRNELVIDFNLPQNSSIAETNAQMAKFEQ 579 +++ L+ V + F P D+ + LP ++ T + + Sbjct: 536 STGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTD 595 Query: 580 EALKGD-PDIDHWSTYVGTGAQRFVLSFDVQPADVSFGQVIIVTKSLEARDRARAKLQAY 638 LK + +++ T G F + G + K E R+ +A Sbjct: 596 YYLKNEKANVESVFTVNG---------FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 639 LTKTF----PGTDAYVHLLDIGPP----VGRPVQYRV-----SGPDVAKVREIAQEYAGV 685 + + D +V + P +G + +G + + + G+ Sbjct: 647 IHRAKMELGKIRDGFV--IPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGM 704 Query: 686 MRGN-SHLGAVIFDWMEPSRVVKVDVLQDKARQLGVTSSDIANALNGVLDGTSITQVRDD 744 + + L +V + +E + K++V Q+KA+ LGV+ SDI ++ L GT + D Sbjct: 705 AAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDR 764 Query: 745 IYLIDVRGRAQAKERQSLETLRDLQLSGSNGQSIPLAALATLRYQIEQPEIWRRSRLPTL 804 + + +A AK R E + L + +NG+ +P +A T + P + R + LP++ Sbjct: 765 GRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSM 824 Query: 805 TLKASVIDQVQPNTVVDQLKPALAAFNAKLPAGYKVVTGGSVEESAKSQAPIIAVVPIML 864 ++ P T + +KLPAG G + S A+V I Sbjct: 825 EIQGE----AAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISF 880 Query: 865 FTMATILMLQLQSFQRLFLVFAVAPLALIGVVAALLPSGAPLGFVAILGVLALIGILIRN 924 + L +S+ V V PL ++GV+ A ++G+L IG+ +N Sbjct: 881 VVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKN 940 Query: 925 SVILIVQIEHLRD-EGRPPWEAVMEATEHRMRPIMLTAAAASLALIPIA------REVFW 977 +++++ + L + EG+ EA + A R+RPI++T+ A L ++P+A Sbjct: 941 AILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQN 1000 Query: 978 GPMAYAMMGGIIVGTVLTLLFLPALYV 1004 + +MGG++ T+L + F+P +V Sbjct: 1001 -AVGIGVMGGMVSATLLAIFFVPVFFV 1026 Score = 91.4 bits (227), Expect = 1e-20 Identities = 86/532 (16%), Positives = 188/532 (35%), Gaps = 60/532 (11%) Query: 513 MLNACMRYRWTTIIVTVLVFGLSVFGMRFVQQQFFPSSDRNELVIDFNLPQNSSIAETNA 572 M N +R ++ +++ + + +P+ + + N P + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQTVQD 59 Query: 573 QMAKFEQEALKGDPDIDH-WSTYVGTGAQRFVLSFDVQPADVSFGQVIIVTKSLEARDRA 631 + + ++ + G ++ + ST G+ L+F D QV + K A Sbjct: 60 TVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSG-TDPDIAQVQVQNKLQLATPLL 118 Query: 632 RAKLQAYLTKTFPGTDAYVHLL------------DIGPPVGRPVQYRVSG-PDVAKVREI 678 ++Q + +Y+ + DI V V+ +S V V+ Sbjct: 119 PQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLF 178 Query: 679 AQEYAGVMRGNSHLGAVIFDWMEPSRVVKVDVLQDKARQLGVTSSDIANALNGVLDGTSI 738 +YA +++ + D + +T D+ N L D + Sbjct: 179 GAQYA----------------------MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAA 216 Query: 739 TQVRDDIYLIDVRGRAQAKER---QSLETLRDLQLSGS-NGQSIPLAALATLRYQIEQPE 794 Q+ L + A + ++ E + L + +G + L +A + E Sbjct: 217 GQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYN 276 Query: 795 IWRRSR-LPTLTLKASVIDQVQPNTVVDQLKPALAAFNAKLPAGYKVV----TGGSVEES 849 + R P L + +K LA P G KV+ T V+ S Sbjct: 277 VIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLS 336 Query: 850 AK--SQAPIIAVVPIMLFTMATILMLQLQSFQRLFLVFAVAPLALIGVVAALLPSGAPLG 907 + A++ + L ++ L LQ+ + + P+ L+G A L G + Sbjct: 337 IHEVVKTLFEAIMLVFL-----VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSIN 391 Query: 908 FVAILGVLALIGILIRNSVILIVQIE-HLRDEGRPPWEAVMEATEHRMRPIMLTAAAASL 966 + + G++ IG+L+ ++++++ +E + ++ PP EA ++ ++ A S Sbjct: 392 TLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSA 451 Query: 967 ALIPIA-----REVFWGPMAYAMMGGIIVGTVLTLLFLPALYVAWFRIKTPE 1013 IP+A + + ++ + + ++ L+ PAL + + E Sbjct: 452 VFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAE 503
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.3 bits (84), Expect = 2e-04 Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 18/162 (11%) Query: 98 RASAAEVSRSQAQLTNATGTEGRQRTLLETDAT-TKATLENAEQ--------SRAAAQAS 148 + + E + N Q +E++ K + Q + Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 149 VIKAQSNLAKAREQLGYAQLKADFAGIVTAVNA-EVGQVVSPGQ---SVVTVARPDIREA 204 + LAK E+ + ++A + V + G VV+ + +V A Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 205 VIDVGDDIAGGLQAGTSFTVRSQVDPSVST---TGTVREIAP 243 ++ D G + G + ++ + P G V+ I Sbjct: 371 LVQNKD--IGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL 410
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.0 bits (122), Expect = 4e-09 Identities = 33/185 (17%), Positives = 54/185 (29%), Gaps = 30/185 (16%) Query: 8 PPPPLPRRRRLAAAGCAAIGLLLAG---CDQKAAVTAQPVRLVQTQIVKLSERRQSITLT 64 P PR G I +L+ + A + +++ +K E Sbjct: 52 PVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIE-------- 103 Query: 65 GDVQARVLAELSFRVSGRVTERLVEVGAQVKAGQLLARIDPAEQQADLDSAQAAV--AAA 122 + V E +V+ G V+ G +L ++ +AD Q+++ A Sbjct: 104 ---------------NSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARL 148 Query: 123 ESQVKVATSNFNRQQTLITSGFTTRATFDQAQETLRTAEGSLESAKAQLGTAKDALTYTE 182 E S L F E SL K Q T ++ E Sbjct: 149 EQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL--IKEQFSTWQNQKYQKE 206 Query: 183 LRADA 187 L D Sbjct: 207 LNLDK 211 Score = 42.1 bits (99), Expect = 3e-06 Identities = 36/224 (16%), Positives = 77/224 (34%), Gaps = 27/224 (12%) Query: 98 QLLARIDPAEQQADLDSAQAAVAAAESQVKVATSNFNRQQTLITSGFTTRATFDQAQETL 157 Q +A+ EQ+ A + +SQ++ S T+ ++ + L Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESE--ILSAKEEYQLVTQLFKNEILDKL 304 Query: 158 RTAEGSLESAKAQLGTAKDALTYTELRADADGTITARNI-EVGQVAQAGQSVFTLAHDGN 216 R ++ +L ++ + +RA + + G V +++ + + Sbjct: 305 RQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPED- 363 Query: 217 RDAVIDVYEAALSLKFDD-SKVALALLSDPSVTA---------KGTVREVSP--TIDAKS 264 D E ++ D + + + V A G V+ ++ D + Sbjct: 364 -----DTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRL 418 Query: 265 GTV-RIKIAIENPS-----PEMTLGSAVSATGFIKPEQRIVLPW 302 G V + I+IE + L S ++ T IK R V+ + Sbjct: 419 GLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISY 462
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.2 bits (135), Expect = 5e-12 Identities = 17/73 (23%), Positives = 37/73 (50%) Query: 21 PRQARGRERREQLLDAAAALIAESGLAAVSMHAAAERAGASIGSVYHFFRDKAQMLDALA 80 + +E R+ +LD A L ++ G+++ S+ A+ AG + G++Y F+DK+ + + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 81 ERHDVELQPAFHR 93 E + + Sbjct: 64 ELSESNIGELELE 76
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 45.9 bits (109), Expect = 2e-07 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 12/74 (16%) Query: 32 GGMDLIIRNAVLAQQGELRRADIGISKGRIVAIEAALQADGQ------------VRDAEN 79 G +D +I NA++ + +ADIG+ GRI AI A D Q V E Sbjct: 66 GAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEG 125 Query: 80 CLVVPGFIETHIHL 93 +V G +++HIH Sbjct: 126 KIVTAGGMDSHIHF 139
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 37.8 bits (88), Expect = 1e-04 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 22/100 (22%) Query: 7 DLIIRGGRVATTTDTFEADVAVSGETIAAIGRG------------LGPAKREIDARGKYV 54 D +I + +AD+ + IAAIG+ +GP I GK V Sbjct: 69 DTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIV 128 Query: 55 LPGGVDSHCHI---EQLSAAGIVNADTFESATTSAAFGGT 91 GG+DSH H +Q+ A S T GGT Sbjct: 129 TAGGMDSHIHFICPQQIEEA-------LMSGLTCMLGGGT 161
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 95.6 bits (238), Expect = 1e-24 Identities = 69/340 (20%), Positives = 122/340 (35%), Gaps = 29/340 (8%) Query: 1 MHVLIFGGAGFVGLNTAQGLLERGHAVTVFDA-APL--PSAAQRAFAPFGER-LHVINGD 56 M L+ G AGF+G + ++ LLE GH V D S Q + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 57 VIDADAVAAAIGNGCDAVVMGAAITAGPERDASDPERILAVNLLAQVPILQAARRSGVRR 116 + D + + +G V + +P NL + IL+ R + ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 117 VINLSSAASYGASGQRFAVLEETTPCEPVSLYAITKFTSERVAARLSDLWQTDVISVRLS 176 ++ SS++ YG + ++ + + PVSLYA TK +E +A S L+ +R Sbjct: 121 LLYASSSSVYGLN-RKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 177 AVFGPFERGGGVRDTP--SPQALIAACCARSEPALLNEAGD--KDWVYAVDVADAVCLLL 232 V+GP+ R P + A + N G +D+ Y D+A+A+ L Sbjct: 180 TVYGPWGR-------PDMALFKFTKAMLEGKSIDVYNY-GKMKRDFTYIDDIAEAIIRLQ 231 Query: 233 EAEKPQQTLYNISNEATFTAEAWGRAFASGRSG------FTCRLAEPGETPTVPVFAPVR 286 + T + + + A R + G S + L + P++ Sbjct: 232 DVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ 291 Query: 287 ------GRLSTMRLANEFGWRARFDCAGSAEHFGRWFDQY 320 T L G+ ++F W+ + Sbjct: 292 PGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 98.6 bits (245), Expect = 7e-27 Identities = 67/251 (26%), Positives = 118/251 (47%), Gaps = 4/251 (1%) Query: 3 LKDKVAIITGGGSGIGRASAVMFAREGAFIAVVDRDAAGADETLTLVREAGGDGSVHVGD 62 ++ K+A ITG GIG A A A +GA IA VD + ++ ++ ++ D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 VGEAGFAKATIEGVASARGRLDVLMTAAGFSCGGTVVTTDPADWDAVFRANVGGTWLWAK 122 V ++ + G +D+L+ AG G + + +W+A F N G + ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 123 VAVPIMQQQKAGSIITVASQLAVAGGKGNSAYIAAKGAIISLTRTMAVDFATDGVRVNAL 182 M +++GSI+TV S A +AY ++K A + T+ + ++ A +R N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 183 APGAIDTPLLRRSFARHADPELVREASRQRH----AMKRFGEADEVAAAALFLASDEASF 238 +PG+ +T + +A E V + S + +K+ + ++A A LFL S +A Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 239 TTGAVLPVDGG 249 T L VDGG Sbjct: 246 ITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.0 bits (145), Expect = 1e-13 Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 2/158 (1%) Query: 5 LGKALVVFSERGYHAASLAELRAAMKLATGSLYKAFADKRAIFLATLDYYIARRDRQLRE 64 L AL +FS++G + SL E+ A + G++Y F DK +F + + E Sbjct: 17 LDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELE 76 Query: 65 RLDAQ-ASGRSKLEALLQFYAESASDSEGRRGCLVVTSATELATLDAEAAAKVRAAL-RR 122 S L +L ES E RR + + + + + L Sbjct: 77 YQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLE 136 Query: 123 VETLLRDLLRLGQADGSIRKELDPDAVAGALFCIIQGL 160 + L+ + +L A + I GL Sbjct: 137 SYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.8 bits (80), Expect = 5e-04 Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 3/91 (3%) Query: 96 GKVAKRLVEVGQTIEVGQPLATLDEVDLKLQAEQAEAEFRAA--TGVLAQASAAETRAKE 153 V + +V+ G+++ G L L + + + ++ A Q + + Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 154 LRAKGWTTDAQMDQAKASADEARARLNRAER 184 L + + R E+ Sbjct: 165 LPELKLPDEPYFQNVSE-EEVLRLTSLIKEQ 194
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 478 bits (1231), Expect = e-154 Identities = 240/1052 (22%), Positives = 438/1052 (41%), Gaps = 64/1052 (6%) Query: 6 LSAWAVSHPPLVLFLIVALGLFGFISYERLGRAEDPFFTVKVVNVSVMWPGATSQEMQSQ 65 ++ + + P L + L + G ++ +L A+ P V+VS +PGA +Q +Q Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 66 VADPLEKKLQELPFFEKVQTYSKPAFTAM-QVTFRDSTPPKDVPYLFYLLRKKLADAQPS 124 V +E+ + + + + S A + +TF+ T P ++ KL A P Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIA---QVQVQNKLQLATPL 117 Query: 125 LPSGVLGPFVNDEFSDVDSILFMM-TGDGADYAQLKK---VAEGLRQRLLKVNGVTKVNL 180 LP V ++ E S ++ D Q VA ++ L ++NGV V L Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 181 YGTQDE-RIYVEFSHAKLATLGITPQALFDSLAKQNNVTPAGTVETS------SQRVPLR 233 +G Q RI+++ L +TP + + L QN+ AG + + + Sbjct: 178 FGAQYAMRIWLDA--DLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235 Query: 234 VTGALDGAKAVAETPVESN--GRVFRLGDIATVTHGFVDPPTYKVHQEGKPALGIGVVTA 291 + + + N G V RL D+A V G + GKPA G+G+ A Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENY-NVIARINGKPAAGLGIKLA 294 Query: 292 KGANILELGKDVHAASDDFMKAVPQGIELTQIADQPKVVERAVGEFVHSFVEALVIVLFV 351 GAN L+ K + A + PQG+++ D V+ ++ E V + EA+++V V Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 352 SFLALG-WRTGIVVALSVPLVLGIVFIAMSALGVDLHRISLGALIIALGLLVDDAIIAVE 410 +L L R ++ ++VP+VL F ++A G ++ +++ +++A+GLLVDDAI+ VE Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 411 MMV-VKMEQGWDRVRAASYAWESTAFPMLTGTLVTAAGFLPIGFANSAVGEYTGSIFWIV 469 + V ME A + ++ +V +A F+P+ F + G + Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 470 AIALVASWFVAVIFTPYIGVKLLPDIKVQHGHDEHAVYN--TRMYR----GLRAVVRWCV 523 A+ S VA+I TP + LL + +H ++ + + V + Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 524 THRITTVAATVGVFAASIVAFGHVQQQFFPLSERPELFLQLRLPEGTAFNVTEKAARK-A 582 + + A +V F + F P ++ ++LP G T+K + Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 583 EALLKDDKD-IETFTSYVGQGSPRFWLGLSPQLPNEAFAEIVIVAKDVAARERIKARIET 641 + LK++K +E+ + G S Q N A + + + + A Sbjct: 595 DYYLKNEKANVESVFTVNG-------FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 642 AAAN---GEINEARVRVDRFNFGPP--------VGFPVQFRVI-GPDTAQVREIARQVRD 689 A G+I + V F P GF + G + + Q+ Sbjct: 648 HRAKMELGKIRDGFV----IPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLG 703 Query: 690 IVRQNP-NVRDPQLDWNEQSPYLKLVVDQDRARALGLTPQDVSQSLAMLISGVQVTTIRD 748 + Q+P ++ + + E + KL VDQ++A+ALG++ D++Q+++ + G V D Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 749 GIEKVGVIARAVPSERLDLAGVGDLTITSRNGVAVPLQQIAKIEYAHEEPILWRRNRDMA 808 + +A R+ V L + S NG VP + + P L R N + Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPS 823 Query: 809 ITVRADVADGVQAPDVTNQILPKLADIKAKLDPAYRIEMGGAIEESAKGNASIFALFPLM 868 + ++ + A G + D + ++ +KL + G + AL + Sbjct: 824 MEIQGEAAPGTSSGDAMALM----ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAIS 879 Query: 869 AIVMLTLLMIQLQSFSRLLLVFLTAPLGIIGASLGLNVANAPFGFVALLGLIALAGMIMR 928 +V+ L +S+S + V L PLGI+G L + N ++GL+ G+ + Sbjct: 880 FVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAK 939 Query: 929 NTVILVDQIEH-DVASGLTRREAIIEATVRRARPVVLTALAAILAMIPLSRSAFWG---- 983 N +++V+ + G EA + A R RP+++T+LA IL ++PL+ S G Sbjct: 940 NAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999 Query: 984 -PMAITIMGGLFVATFLTLLYLPGLYALWFRK 1014 + I +MGG+ AT L + ++P + + R Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 94.9 bits (236), Expect = 8e-22 Identities = 83/508 (16%), Positives = 162/508 (31%), Gaps = 36/508 (7%) Query: 5 NLSAWAVSHPPLVLFLIVALGLFGFISYERLGRAEDPFFTVKVVNVSVMWPGATSQEMQS 64 N + L + + + + RL + P V + P +QE Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 65 QVADPLEKKLQELPFFEKVQTYSKPAFTA---------MQVTFRD----STPPKDVPYLF 111 +V D + + ++ F+ V+ + + + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 112 YLLRKKLADAQPSLPSGVLGPFVNDEFSDVDSI----LFMMTGDGADYAQLKKVAEGLRQ 167 + + +L + G + PF ++ + ++ G + L + L Sbjct: 648 HRAKMELG----KIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLG 703 Query: 168 RLLKVNG-VTKVNLYGTQDE-RIYVEFSHAKLATLGITPQALFDSLAKQNNVTPAGTVET 225 + + V G +D + +E K LG++ + +++ T Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 226 SSQRVPLRVTGALD---GAKAVAETPV-ESNGRVFRLGDIATVTHGFVDPPTYKVHQEGK 281 + L V + V + V +NG + T +V G Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSH--WVYGSPRLERYNGL 821 Query: 282 PALGIGVVTAKGANILELGKDVHAASDDFMKAVPQGIELTQIADQPKVVERAVGEFVHSF 341 P++ I A G + D A ++ +P GI + + Sbjct: 822 PSMEIQGEAAPGTSS----GDAMALMENLASKLPAGIGY-DWTGMSYQERLSGNQAPALV 876 Query: 342 VEALVIVLFV-SFLALGWRTGIVVALSVPLVLGIVFIAMSALGVDLHRISLGALIIALGL 400 + V+V + L W + V L VPL + V +A + + L+ +GL Sbjct: 877 AISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGL 936 Query: 401 LVDDAIIAVEMMVVKME-QGWDRVRAASYAWESTAFPMLTGTLVTAAGFLPIGFANSAVG 459 +AI+ VE ME +G V A A P+L +L G LP+ +N A Sbjct: 937 SAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGS 996 Query: 460 EYTGSIFWIVAIALVASWFVAVIFTPYI 487 ++ V +V++ +A+ F P Sbjct: 997 GAQNAVGIGVMGGMVSATLLAIFFVPVF 1024
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.6 bits (149), Expect = 6e-14 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 1 MMTLVSEHIEPDTRERILVVAERLFRQIGYQKTTVADIAKELRMSPANVYRFFESKKAIH 60 M + + TR+ IL VA RLF Q G T++ +IAK ++ +Y F+ K + Sbjct: 1 MARKTKQEAQE-TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF 59 Query: 61 QGVARELMGQV-EAAAIAIAERGGPAVPRLRELLGTIHR 98 + + E A+ G + LRE+L + Sbjct: 60 SEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLE 98
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 28.1 bits (62), Expect = 0.028 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 7/69 (10%) Query: 32 GWISSRDPDGHVNLAPYSFFNAFNYTPPI---IGFSSTQWKDSAANIKDTGEFVWNLVTR 88 G + + D HVN P + + + + + I F T+ KD IK + W+ Sbjct: 760 GMNTDTNTDVHVNKEPKAVIKS-DSSVIVEEEINFDGTESKDEDGEIK---AYEWDFGDG 815 Query: 89 DLATQMNAT 97 + + + AT Sbjct: 816 EKSNEAKAT 824
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 44.4 bits (105), Expect = 2e-06 Identities = 19/129 (14%), Positives = 49/129 (37%), Gaps = 9/129 (6%) Query: 731 GTVLIVEDNLIIAMGAEVILLELGARHIDTAASVNQALKSIERAVPSFALLDINLGAESS 790 T+L+ +D+ I L G + ++ + I + D+ + E++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 791 LPVGHRLKEL--GVPFMFATGYG--ERAPIPAELSEAPVIQKPY----TRELVEKALSKM 842 + R+K+ +P + + A +E + KP+ ++ +AL++ Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 843 MKQAAPARD 851 ++ + D Sbjct: 123 KRRPSKLED 131
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.018 Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 13/181 (7%) Query: 85 RDRTTMSSSAADARAEIQSSPSGDDTKTASAVPSSGARTAAVFPPVAAFPTVPAAATAPA 144 + T + +++ +T A P+ + A PA Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 145 AAKTPTSPEPLSSAPAVDTSDSATSDSAVATRWPDSSGTLQTQP----APARAPTLTLAA 200 + +P++ + V+T +S + P+++ TQP + P Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVEN-------PENTTPATTQPTVNSESSNKPK-NRHR 1224 Query: 201 AASDAAPADVAPVVASQPTADVAPLTSVGGLPDNAARTRLFAFLGAVAVA-GFSTSVLLA 259 + + P +V P S L + NA + A VA+ G + S ++ Sbjct: 1225 RSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHIS 1284 Query: 260 R 260 + Sbjct: 1285 Q 1285
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 31.2 bits (70), Expect = 0.006 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Query: 230 AERRIAAVEPL-PAETLAPFMTAREAPRVAFS 260 ERRIAAV P P ET P MT +EA ++AF Sbjct: 530 VERRIAAVNPSDPLETTKPDMTLKEALKIAFG 561
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 51.9 bits (124), Expect = 3e-10 Identities = 23/81 (28%), Positives = 38/81 (46%) Query: 206 CWIAELAGEPVGSIFLVKGSDDVAKLRLLMVEKKARGLGVGRALTEQCIRFARETNYTAI 265 ++ L +G I + + A + + V K R GVG AL + I +A+E ++ + Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGL 126 Query: 266 ELWTQSILTAARDIYARAGFR 286 L TQ I +A YA+ F Sbjct: 127 MLETQDINISACHFYAKHHFI 147
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 311 bits (799), Expect = 4e-97 Identities = 119/486 (24%), Positives = 187/486 (38%), Gaps = 97/486 (19%) Query: 517 EATKLQADGRKVILVRIETSPEDIHGMHA--AEGILTTRGGMTSHAAVVARGMGKPCVSG 574 E L + +++ + +P D ++ +G T GG TSH+A+++R + P V G Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 575 CGTIRVDYGRGTMSIGGRTFKTGDVITIDGSVGQVLAGRMPMI----EPELSGEFGTLMG 630 + + GD++ +DG G V+ E + + Sbjct: 206 TKEVTEK------------IQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQE 253 Query: 631 WADAV---------RETGVRVNADTPEDARTAIKFGAEGIGLCRTEHMFFEETRIRTVRE 681 WA V + N TP+D + G EGIGL RTE ++ + ++ Sbjct: 254 WAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQL----- 308 Query: 682 MILSEEEQERRAALAKLLPMQRADFVELFEIMKGLPVTIRLLDPPLHEFLPHTQAEVEEV 741 +EEEQ + E+ + M G PV IR LD + L + Q E Sbjct: 309 --PTEEEQ-------------FEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKEL- 352 Query: 742 ARAMNTDPRRLADRARELSEFNPMLGFRGCRLAIAYPEIAEMQARAIFEAAVEAEKRTGE 801 NP LGFR RL + +I Q RA+ A+ Sbjct: 353 ---------------------NPFLGFRAIRLCLEKQDIFRTQLRALLRASTYGN----- 386 Query: 802 AVGLEVMVPLIATKAEFDLVKARIDAMAQAVIRETGAKLE-YQVGTMIELPRAALMAGQI 860 L+VM P+IAT E KA + ++ E + +VG M+E+P A+ A Sbjct: 387 ---LKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLF 443 Query: 861 AEAAEFFSFGTNDLTQTTYGISRDDA-GSFLGAYVAKGILEIDPFISIDRAGVGELVKIG 919 A+ +FFS GTNDL Q T R + S+L P+ V ++K Sbjct: 444 AKEVDFFSIGTNDLIQYTMAADRMNERVSYL----------YQPYHPAILRLVDMVIKAA 493 Query: 920 VERGRATRPKLKVGICGEHGGDPASVAFCHKIGMNYVSCSPYRVPIARLAAAQSALG--K 977 G+ VG+CGE GD ++ +G++ S S + AR + + K Sbjct: 494 HSEGK------WVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKEELK 547 Query: 978 EIASQA 983 A +A Sbjct: 548 PFAQKA 553
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.012 Identities = 32/211 (15%), Positives = 63/211 (29%), Gaps = 9/211 (4%) Query: 32 TETGYQDIASRLARQPGVAERWQKRVFSAAASVQVATYSFGLPIGTSAPQGIRLASLSER 91 E QD A+ VA+ + V + + +VA G+ + + Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQ------SGSETKETQTTETKETA 1104 Query: 92 DLDITGSTTPRNPALQVPPRYRPSDFPTVDRTLKGDRLVVRPAAPPEPPTEAAEPVDTAP 151 ++ Q P+ P +++ + + PA +P EP Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQS-ETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 152 SAPAPAAPAQPDSNSSVFGAKTSEAPATILVPPRAALDPELQEALSAPPLAQYDSTKPEI 211 + PA+ S++ S T A + P + S KP+ Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPE--NTTPATTQPTVNSESSNKPKN 1221 Query: 212 RPSGELKPASEPPAPDGGAALDGLNIKTANL 242 R ++ P ++ D + +L Sbjct: 1222 RHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.8 bits (98), Expect = 4e-06 Identities = 28/143 (19%), Positives = 61/143 (42%), Gaps = 2/143 (1%) Query: 67 LLWGLGQPLAGAIADRFGVLRVICVGALLYASGLLMMRYATTPLQLDIGAGVLVGFGLSG 126 L + +G + G ++D+ G+ R++ G ++ G ++ + L I A + G G + Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG-AA 118 Query: 127 CSFNLILSAFSKLLPPERRGLALGAGTAAGSLGQFLFAPFGVALIDQFGWQSALMVFATL 186 L++ ++ +P E RG A G + ++G+ + G + W S L++ + Sbjct: 119 AFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW-SYLLLIPMI 177 Query: 187 MLFIVPLSLAVATPPAAEAKPTD 209 + VP + + D Sbjct: 178 TIITVPFLMKLLKKEVRIKGHFD 200
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 31.3 bits (71), Expect = 0.004 Identities = 10/27 (37%), Positives = 16/27 (59%) Query: 153 VVVTGAAGGVGSVATAVLAKLGYHVIA 179 +VTGAAG +G + L + G+ V+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVG 29
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 33.1 bits (75), Expect = 0.004 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 290 ARAAADAEAKIERGRRVDNITRQFENTIGEIVQTVSSASTELEHSAGALSSTATRSQEIS 349 ARA A AEA+ + D +T++ ++ + E ++ +S + A A ++ A ++++ Sbjct: 71 ARAKAAAEAQAKAKANRDALTQRLKDIVNEALRHNASRTPSATELAHA-NNAAMQAEDER 129 Query: 350 TAVAAASEEASTNVQSVASATEELSSSITEISRQVQESARMASEAVTQARQTNDRVSELS 409 +A A E+A ++ A +E EI R+ E+ R A + + +SE + Sbjct: 130 LRLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAE-EKRLAALSEEA 188 Query: 410 KA 411 KA Sbjct: 189 KA 190
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 31.5 bits (71), Expect = 0.012 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%) Query: 54 SPLSPLQ-EGVAAAPVPPPLPEVAEAALQPAAITSDEAADQPPPLAPPLPQAPA 106 +P P+ V A + PP A+QP E +P P+ P +AP Sbjct: 40 APAQPISVTMVTPADLEPP------QAVQPPPEPVVEPEPEPEPIPEPPKEAPV 87
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 27.3 bits (60), Expect = 0.040 Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 4/128 (3%) Query: 18 AASAADNESDRLREALRAATAQSRSLEDQRAALQAKLTAAEQERDRLKKQNEAYRAQVKE 77 + E L + A AK+ E E+ L+ + ++ Sbjct: 212 KIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEG 271 Query: 78 AEQAYRQAVTDFNQRITERDEALEKWKSAYGEAANVARAKEAERLKFLTESTDYKARTKS 137 A E+ + + + ++ A R + + K Sbjct: 272 AMNFSTADSAKIKTLEAEKAALEAE----KADLEHQSQVLNANRQSLRRDLDASREAKKQ 327 Query: 138 CEAKNAEL 145 EA++ +L Sbjct: 328 LEAEHQKL 335
>PF09025#YopR Core Length = 143 Score = 31.1 bits (70), Expect = 0.003 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 11/82 (13%) Query: 25 SRTPAAAATPAPTRGAAPATPPAAAKPAAGEERGAIRNDEVVARVGD------SDVTAD- 77 S +P AA PA + A PAAG + N + R+ + AD Sbjct: 15 SASPKAANLPAVDQVLAFEQALGGEPPAAGRRLAGLENGALGERLLQRFAQPLQGLEADR 74 Query: 78 -EVRATIVTLDP---RQQAALM 95 E++A + P +QQ L+ Sbjct: 75 LELKAMLRAELPLGRQQQTFLL 96
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 0.001 Identities = 17/144 (11%), Positives = 36/144 (25%), Gaps = 11/144 (7%) Query: 266 EQQLADINSQFATARAATSEARARLDRIEQVRKMDIKEAAVADVLRDE-VITRLRTKYLD 324 + Q RA AR++R E + +++ L + I + L+ Sbjct: 199 QNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHA--VLE 256 Query: 325 LSARETYLSARYGADHAAAEGIRQQMADLTASIGSELGRIAASYQSDYEIARAREESLEQ 384 + + E I ++ L Sbjct: 257 QENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTL 316 Query: 385 QLANLVSRGRLTNRDRLGLAELES 408 +LA N +R + + + Sbjct: 317 ELA--------KNEERQQASVIRA 332
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.5 bits (113), Expect = 5e-08 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 9/140 (6%) Query: 277 LTSPSVGAVAQQWGRRPLLMLGFAALTIRGALFAVVHDPYVLVAVQIFDGVTAAVFAVMI 336 +P +GA++ ++GRRP+L++ A + A+ A +VL +I G+T A AV Sbjct: 58 ACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAV-A 116 Query: 337 PLTVADVAFGSG---HFNLAQGIVGTASGVGGSLSTVVAGFASDRFGSATAFMGLSGVAL 393 +AD+ G HF G + G G V+ G F F + + Sbjct: 117 GAYIADITDGDERARHF----GFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNG 171 Query: 394 TGLVLIALLMPETGQRVRRG 413 + L+PE+ + RR Sbjct: 172 LNFLTGCFLLPESHKGERRP 191
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.8 bits (215), Expect = 3e-23 Identities = 34/121 (28%), Positives = 55/121 (45%) Query: 6 KPKVYVADDDADVLGSLRFLLEADGFDVRTFRSGNALLKASDRAAVDCFVVDYKMPELNG 65 + VADDDA + L L G+DVR + L + D V D MP+ N Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 66 VEVADRLRKQGATAPVVLITGHYDDRLAARAAAVGIQDFLLKPLLDDNLVKRIRKAIAND 125 ++ R++K PV++++ A +A+ G D+L KP L+ I +A+A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 126 E 126 + Sbjct: 123 K 123
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 124 bits (312), Expect = 1e-35 Identities = 41/149 (27%), Positives = 68/149 (45%) Query: 4 RGRVYVIDDDEAMRDSLNFLLDSSGFDVTLFENAQSFLDRLPTLGFGCVVSDVRMPGIDG 63 + V DDD A+R LN L +G+DV + NA + + VV+DV MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 64 IELLKRMKTTGSGFPILVMTGHGDVPLAVEAMKLGAVDFLEKPFEDERLVAMIETAIKQA 123 +LL R+K P+LVM+ A++A + GA D+L KPF+ L+ +I A+ + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 124 EPAAKNESVTQDILARVASLSPRERQVMD 152 + + S +++ Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYR 151
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 31.2 bits (70), Expect = 0.009 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 17/131 (12%) Query: 247 HDLTEHQQTQARLRELQSELVHVSRLSAMGEMASALAHELNQ-PLAAISNYMKGS-RRLL 304 H + + Q + + + EM++ALA N+ S+ + S R+L Sbjct: 27 HTDAQQAEIQQAAEDSSPGAEVQKFVQSTDEMSAALAQFRNRRDYEKKSSNLSNSFERVL 86 Query: 305 AGSSDPNTGKI-----------ESAMDRAAEQAIRAGQIIRRLRDFVSRGESE----KRV 349 + P +I E + +A ++ LR+ + R + E K++ Sbjct: 87 EDEALPKAKQILKLISVHGGALEDFLRQARSLFPDPSDLVLVLRELLRRKDLEEIVRKKL 146 Query: 350 ESLSKLIEEAG 360 ESL K +EE Sbjct: 147 ESLLKHVEEQT 157
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 57.5 bits (139), Expect = 1e-11 Identities = 60/291 (20%), Positives = 92/291 (31%), Gaps = 72/291 (24%) Query: 3 GATGTIGRATVRALVARGHEVVCF-----------VRPRSEAITIPGATVRTGDVTDPAS 51 GA G IG + L+ GH+VV + R E + PG D+ D Sbjct: 7 GAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD-RE 65 Query: 52 LVRDGFRGERFDAVVSCMASRTGV------PRDAQAIDYQAHVNVLEAARAAGVTQFVLL 105 + D F F+ V R V P + +N+LE R + + Sbjct: 66 GMTDLFASGHFERVFI-SPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLLYA 124 Query: 106 SAICV---------------QKPLLAFQQAKLAFEAQ---------LVAAGLTYSIV--- 138 S+ V P+ + K A E L A GL + V Sbjct: 125 SSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGP 184 Query: 139 --RP-TAFFKSLSGQVARVQQGRPYLVFGDGRL----TACKPISDADLGAYLAGCLDDEA 191 RP A FK + +G+ V+ G++ T I++A + + Sbjct: 185 WGRPDMALFKFTK----AMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL-QDVIPHADT 239 Query: 192 LWN-------------RVLPIGGPGPAITPLDQAEHLFALLGRKPNIRRVP 229 W RV IG P + +D + L LG + +P Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSP-VELMDYIQALEDALGIEAKKNMLP 289
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.8 bits (147), Expect = 2e-13 Identities = 32/200 (16%), Positives = 67/200 (33%), Gaps = 8/200 (4%) Query: 3 SDLRRQLILGAAKRCFARHGYAGTTTKSVAAAAAISEALLFKHFPSKAALYAEILTEECE 62 + RQ IL A R F++ G + T+ +A AA ++ ++ HF K+ L++EI Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 63 ADPDFELLLGQEPSTATLVKMMAGMVRHFLGIADGPNEEEEQRLRLMASSHLDDGEFARL 122 + EL + L + ++ + EE +RL + H + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVL----ESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 123 LYTKIDDLIGTKFVTCLASAVAAGDAARLAAAPRDLFWFAHHTVLMAAVTRLPSTPCVPY 182 + + + + + + A++ A A ++ ++ L Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAI--IMRGYISGLMENWLFAP 182 Query: 183 G--TAASLERQLSEFILRGI 200 R +L Sbjct: 183 QSFDLKKEARDYVAILLEMY 202
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 66.0 bits (161), Expect = 7e-14 Identities = 36/182 (19%), Positives = 63/182 (34%), Gaps = 21/182 (11%) Query: 129 QGDLANFKAQVTVAQLSLDRAKQLASRQFGPQATVDQAQAAYDQAQAGVAKTEALIAQKL 188 + L ++++ A+ QL + + Q +AK E + Sbjct: 272 KSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR--QTTDNIGLLTLELAKNEERQQASV 329 Query: 189 VRAPFDG---ELGVRKVDLGQYLSAGTQIVSLT-DLSQLWVNFTVTEKDSGQLKVGQVVR 244 +RAP +L V G ++ ++ + + L V V KD G + VGQ Sbjct: 330 IRAPVSVKVQQLKVHTE--GGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAI 387 Query: 245 VTVDAYPGKTF---EGKITTIEPQIATD---------TRNIRVQGTIANPEHI-LKPGMF 291 + V+A+P + GK+ I D +I ++I L GM Sbjct: 388 IKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMA 447 Query: 292 AT 293 T Sbjct: 448 VT 449 Score = 37.5 bits (87), Expect = 7e-05 Identities = 27/181 (14%), Positives = 61/181 (33%), Gaps = 33/181 (18%) Query: 14 IDDKPRKRTRPVLWFIVIGLLLAGLVGGLVWFNMFRDKMIAQFFANMKPPPLNVSIATAT 73 I+ +R R V +FI+ LV + + +ATA Sbjct: 49 IETPVSRRPRLVAYFIM-----GFLVIAFILS----------VLG-----QVE-IVATAN 87 Query: 74 AETVPNLLTAVGDLAAVHQVNVTADASGRITDIMFTPGTTVKQGTPLVQLYDAPEQGDLA 133 + + + + + +I+ G +V++G L++L + D Sbjct: 88 GKLTH----------SGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTL 137 Query: 134 NFKAQVTVAQLSLDRAKQLASRQFGPQATVDQAQAAYDQAQAGVAKTEALIAQKLVRAPF 193 K Q ++ Q L++ + + + + + + V++ E L L++ F Sbjct: 138 --KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQF 195 Query: 194 D 194 Sbjct: 196 S 196
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 813 bits (2102), Expect = 0.0 Identities = 318/1029 (30%), Positives = 533/1029 (51%), Gaps = 30/1029 (2%) Query: 5 DIFIKRPVLSVVVSLLILLLGLRAAFVLPIRQYPKLSNTVVNVTTVYPGASADLIQGFIT 64 + FI+RP+ + V+++++++ G A LP+ QYP ++ V+V+ YPGA A +Q +T Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 TPLEQAVASAEGVDYITSSSVQ-GTSTIQVFIKLNFDPSQALTEVLAKVNSVRYLIPKES 123 +EQ + + + Y++S+S G+ TI + + DP A +V K+ L+P+E Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 NDPIVTKTTGQTTSVMYLGFSSE--ELSGSAISDYLTRVVQPVLSTVDGVAAANILGGQT 181 ++ ++ +M GF S+ + ISDY+ V+ LS ++GV + G Q Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ- 181 Query: 182 FAMRIWLNPEKMAGRNVSPTDVAAAIAANNFQSAAGQAKGYFIVS------NITTNTGLT 235 +AMRIWL+ + + ++P DV + N Q AAGQ G + +I T Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 DVNQFKRMIVKA-KDGGFVRMEDIATVELAAQSTDASVAFNGERAIFIGVDATPQGNPLN 294 + +F ++ ++ DG VR++D+A VEL ++ + NG+ A +G+ N L+ Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 IVKGVRALFPDLQRNLPPSMKMKVAYDSTKFIQSSIDEVEHTLGEAVLIVIVVIFLFLAS 354 K ++A +LQ P MK+ YD+T F+Q SI EV TL EA+++V +V++LFL + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 LRSVIIPVVTIPLSLVGVCTLMLALGFSINLLTLLAMVLAIGLVVDDAIVVVENIHRHLE 414 +R+ +IP + +P+ L+G ++ A G+SIN LT+ MVLAIGL+VDDAIVVVEN+ R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 415 EGK-APVQAALQGAREIVGPVISMTITLAAVYAPIGFLGGLTGSLFREFAFTLAGSVIVS 473 E K P +A + +I G ++ + + L+AV+ P+ F GG TG+++R+F+ T+ ++ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 GVIALTLSPMMCSVLLR------SAEEGRFARLVNRVFGAMTNWYGRKLDRSLDYRPVTA 527 ++AL L+P +C+ LL+ +G F N F N Y + + L Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 528 LFALTILGLVGFLYMHTSKELAPEEDQGIVFSITKAPKYANIDYINFYTDKLDKAFQKFP 587 L I+ + L++ PEEDQG+ ++ + P A + D++ + K Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 588 ETDLRFVLN------GINGPQGGFAGMLLKPWDERTR---SSIKLKPLVQAELSKIEGIN 638 + ++ V G A + LKPW+ER S+ + + EL KI Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 639 AFAFNLPA--LPGGPGGLPVQMVISSTNGFQAVYEQMAKLKDAARKSGMFIVS-DSDLEF 695 FN+PA G G +++ + G A+ + +L A + +VS + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 696 NQPVVKVWINRSKASDLGINMQSIGNTLAVLLGGNYINRFNLEGRSYQVIPQVPRDKRLS 755 + K+ +++ KA LG+++ I T++ LGG Y+N F GR ++ Q R+ Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 756 PESLAGYYVATAAGQQVPLSTVVSIETATDPNSLTHFNQLNSATFSAVPMPGVTVGQAVD 815 PE + YV +A G+ VP S + L +N L S PG + G A+ Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 816 FLEKQAKNLPSGFSHDYLADARQYVQEGNQLAITFGFALIIIFLVLAAQFESLRDPLVIM 875 +E A LP+G +D+ + Q GNQ + +++FL LAA +ES P+ +M Sbjct: 842 LMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVM 901 Query: 876 ISVPMAIVGALIPLFFGLATMNIYTQVGLLTLVGLITKHGILMVEFANELQLSEGLDRRR 935 + VP+ IVG L+ ++Y VGLLT +GL K+ IL+VEFA +L EG Sbjct: 902 LVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVE 961 Query: 936 AIEKSARIRLRPILMTTAAMVTGLVPLLTASGAGAASRFSIGLVVVAGMSIGTLFTLFVL 995 A + R+RLRPILMT+ A + G++PL ++GAG+ ++ ++G+ V+ GM TL +F + Sbjct: 962 ATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFV 1021 Query: 996 PAVYTVIAT 1004 P + VI Sbjct: 1022 PVFFVVIRR 1030
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 29.3 bits (66), Expect = 0.017 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 38 MAGEERDPAVIEQIRKQYRLDQPLPVQYGYWIKGVLSGDF--GESLRIKMPVRDLILQKL 95 + G+ D A+I +R+ Y + IK + + E I++ R+L + + Sbjct: 189 IGGDRFDEAIINYVRRNYGSL--IGEATAERIKHEIGSAYPGDEVREIEVRGRNLA-EGV 245 Query: 96 PVTLQLASMAIVIAFLIGIPAGIVSAVKR 124 P L S I+ A L GIVSAV Sbjct: 246 PRGFTLNSNEILEA-LQEPLTGIVSAVMV 273
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.5 bits (66), Expect = 0.031 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 393 SGRSDPDGNTYNHLHSGAALNYSAWSNAAADKALEDARLVSDIAKRKAIYERLVKE 448 S + N AA SA + AD +L +A +V D +R +Y+RL+ Sbjct: 220 SDATIQQVTVDNQRIPQAATRASAQARVEADPSL-NAIIVRDSPERMPMYQRLIHA 274
>PF05844#YopD protein Length = 295 Score = 29.2 bits (65), Expect = 0.047 Identities = 42/239 (17%), Positives = 92/239 (38%), Gaps = 7/239 (2%) Query: 429 AAVGEIVDTVSAASS--QLEQSATTLTEAARRSQGLTTAVASASEEATTNVQSVASATEQ 486 A G V T AA+ Q+ + E Q L A+ + + + Sbjct: 23 GAAGRSVGTPQAAAELPQVPAARADRVELNAPRQVLDPVRMEAAGSELDSSVELLLILFR 82 Query: 487 MASSVTEISRQVQDSARIAIDAVGQARTTTGRVS-ELSKAATRIGDVVELINTIAGQTNL 545 +A E+ +D+ AI +A+ R L A I V L + + G Sbjct: 83 IAQKARELGVLQRDNENQAIIHAQKAQVDEMRSGATLMIAMAVIAGVGALASAVVGSLGA 142 Query: 546 LALNATIEAARAGE---AGRGFAVVASEVKALAEQTAKATGEIGQQISSIQAATQESVAA 602 L I + + GR ++ ++++AL + + + +G+ ++ QA ++ A Sbjct: 143 LKNGKAISQEKTLQKNIDGRN-ELIDAKMQALGKTSDEDRKIVGKVWAADQAQDSVALRA 201 Query: 603 IKEISSTIEKLSEISSTIAAAVEQQGAATQEISRNVQQAAHGTQQVSANIIDVERGAAD 661 + ++++T+ + Q A+ ++ + QA+ ++V+A I ++ + Sbjct: 202 AGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQASAREEEVNATIGQSQKQKVE 260
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.5 bits (89), Expect = 1e-04 Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 8/162 (4%) Query: 368 RANAETKARAEAEEKAQADALAAEQRKRDMQQLADSFERS---VGQIIETVSSASTELEA 424 + A E EEKA+ + ++ + Q++ E+S Q + T Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIK 1156 Query: 425 SAGSLTSTAERSQQMAVTVAAASEQASTNVQSVASATEELSSSVNEISRQVQESARMATE 484 S T+T ++Q A ++ EQ T +V + + + N Q + + Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216 Query: 485 AVSQAR-----QTNDQVSELSKAAARIGDVVELINTIAGQTN 521 + R ++ E + ++ V L + + TN Sbjct: 1217 NKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTN 1258
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 31.7 bits (72), Expect = 0.003 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Query: 189 KSFAMLGVINVVMLALGAVIGTLMVRSVSQGIASIVQPM 227 + FAM G NVV LA+G +IG + VS +A I+ P Sbjct: 8 REFAMRG--NVVDLAVGVIIGAAFGKIVSSLVADIIMPP 44
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 37.6 bits (87), Expect = 1e-04 Identities = 42/213 (19%), Positives = 77/213 (36%), Gaps = 19/213 (8%) Query: 284 QEMSKLAESFEGAIGNIVDTVSSASSELESSANSLSGTALRGQELSTTVAAASEEASANV 343 Q+ K G NI D + A L S+ + GTAL ++ + + + Sbjct: 119 QKYQKAGNILGGGAENIGDNLGKAGGIL-STFQNFLGTALSSMKIDELIKKQKSGGNVSS 177 Query: 344 QAVASATEELTSS-VKEISRQVQESARIASDAVDQARRTNDRVGELSKAATRIGDVVELI 402 +A A+ EL + V ++ V+ + + +G + + V + Sbjct: 178 SELAKASIELINQLVDTVASLNN--------NVNSFSQQLNTLGSVLSNTKHLNGVGNKL 229 Query: 403 NTIAGQTN----LLALNATIEAARAGEA-GRGFAVVASEVKALAEQTAKATGEIGQQISG 457 + N L ++ + A A A ++ A E T K G +G+ IS Sbjct: 230 QNLPNLDNIGAGLDTVSGILSAISASFILSNADADTRTKAAAGVELTTKVLGNVGKGISQ 289 Query: 458 IQAATQESVGAIREISTTIERLSEIAATVAAAV 490 A + + G +ST+ IA+ V A+ Sbjct: 290 YIIAQRAAQG----LSTSAAAAGLIASAVTLAI 318
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.7 bits (116), Expect = 3e-08 Identities = 43/248 (17%), Positives = 83/248 (33%), Gaps = 40/248 (16%) Query: 130 ADTVQAQNDFIAAITSMNKAKSALDLADIQYKRAKDLFEGRAIPLKDFQQAEATSVQAQN 189 + + + + + + +N+ ++ + + L +AI + E V+A N Sbjct: 207 LNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVN 266 Query: 190 DMRSSQTALEAARN-----KLRILGFTD--------------AAIADFQNKGVIDRE--- 227 ++R ++ LE + K T I + + E Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQ 326 Query: 228 -ITIYAPIGGTVVQRKV-GPGQYVNSGASDPVFVI-GDLSTVWLTAFVRESDAALVNIGE 284 I AP+ V Q KV G V + + + VI + T+ +TA V+ D +N+G+ Sbjct: 327 ASVIRAPVSVKVQQLKVHTEGGVVTTA--ETLMVIVPEDDTLEVTALVQNKDIGFINVGQ 384 Query: 285 EILVNVLALPGR---PLKASINYVAA--SIDPAT------RRLLVRATI--DNKDGVLKP 331 ++ V A P L + + D + + NK+ L Sbjct: 385 NAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSS 444 Query: 332 EMFANVTI 339 M I Sbjct: 445 GMAVTAEI 452 Score = 43.3 bits (102), Expect = 1e-06 Identities = 23/159 (14%), Positives = 56/159 (35%), Gaps = 10/159 (6%) Query: 84 ITEGKVAVDEDRSTPVFSPYAGRVTKLLARPGETVRQGQPLFVIEA----ADTVQAQNDF 139 GK+ RS + V +++ + GE+VR+G L + A ADT++ Q+ Sbjct: 85 TANGKLTHS-GRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSL 143 Query: 140 IAAITSMNKAKSALDLADIQYKRAKDLFEG---RAIPLKDFQQAEATSVQAQNDMRSSQT 196 + A + + ++ L + + + ++ + + + + ++ + Sbjct: 144 LQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKY 203 Query: 197 ALEAARNKLR--ILGFTDAAIADFQNKGVIDREITIYAP 233 E +K R L V + ++ Sbjct: 204 QKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSS 242
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 567 bits (1463), Expect = 0.0 Identities = 223/1063 (20%), Positives = 424/1063 (39%), Gaps = 61/1063 (5%) Query: 4 LVAIAVQRRFLMVGMFVAVLIGGLIAFRQLNIEAYPDPTPPMVDIVTQSNGLSAEEIERY 63 + ++R + + +++ G +A QL + YP PP V + G A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 64 ITIPIETQVAGIKNLRTIRTISL-YGLSDVKLQFSFDYTYDEALQQVLNRLSQLSP-LPG 121 +T IE + GI NL + + S G + L F D A QV N+L +P LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 NVTPQISPL--SAVGEIYRYRLRGP-PGYSVLDLKTLQDWVLQRRFRSVPGVIDVTGWGG 178 V Q + S+ + PG + D+ ++ + GV DV +G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 179 KTKTYEIQVDFNKLVANGLTLPQLLQAVGNSNINVGGNTV------EIGTQSAVVRGVGL 232 + I +D + L LT ++ + N + + +A + Sbjct: 181 Q-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 233 IRSMEDLAN-TMVSQSGGNPVLVKDVANVTIAEKPRLGIAGLNNNDDIVQGIVLMRRGEQ 291 ++ E+ T+ S G+ V +KDVA V + + IA +N + + G Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAG-LGIKLATGAN 298 Query: 292 SSPTIARVEQLVDQINNSTILPPGVRIERIYDRKDLIETTTHTVLENMVVGIGLIVLLQW 351 + T ++ + ++ P G+++ YD ++ + H V++ + I L+ L+ + Sbjct: 299 ALDTAKAIKAKLAELQ--PFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMY 356 Query: 352 IFLGDLRSALIVGATIPFALFFAVIILVLRGESANLLSVG--AIDFGLIVDATVIMVEAI 409 +FL ++R+ LI +P L IL G S N L++ + GL+VD +++VE + Sbjct: 357 LFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV 416 Query: 410 FRRLTQTTPLSAAESSHISPETMMGMKSHAILSAAADVSRSIFFAAAIIIAAFLPLFTLS 469 R + + P+ A + + + ++ A ++ A F+P+ Sbjct: 417 ERVM---------MEDKLPPK-------EATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460 Query: 470 GVEGNIFGPMARTYAYALAGGLLATFTVTPALSAIILPAHVEETET----------RLMR 519 G G I+ + T A+A +L +TPAL A +L E Sbjct: 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFD 520 Query: 520 ILHAIYAPVLRWAVGNRNLVMAGAVGLVLLTVVVGRLLGLEFLPKLEEGNLWIRATLPPT 579 Y + +G+ + +V VV+ L FLP+ ++G LP Sbjct: 521 HSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAG 580 Query: 580 ISLQEGNSYVNEMRK--MIRARPEVEAVVSQHGRPDDGTDAAGFFNAEFFAPLKPVKDWP 637 + + ++++ + + VE+V + +G G F LKP ++ Sbjct: 581 ATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQN---AGMAFVSLKPWEERN 637 Query: 638 GTK-DKDQLTAELLKQLDDRFPGVEFNFSQYLQDNVSEAVSGVKGENSIKLYGNDLQALT 696 G + + + +L G F+ + V + I G ALT Sbjct: 638 GDENSAEAVIHRAKMELGKIRDGFVIPFN--MPAIVELGTATGFDFELIDQAGLGHDALT 695 Query: 697 DTANKIKQVLSTVQG-VTDLAVFTSLGQPTVQIDIDRAKAARYGLAPGDINATIKVAIGG 755 N++ + + + + ++++D+ KA G++ DIN TI A+GG Sbjct: 696 QARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG 755 Query: 756 DTAGDLYEPGSDRHFPIIVRLAPEYRKSAEAIENLRIGAQGPNGITQIPLSEVATIKLVS 815 D + G R + V+ ++R E ++ L + + NG +P S T V Sbjct: 756 TYVNDFIDRG--RVKKLYVQADAKFRMLPEDVDKLYVRS--ANG-EMVPFSAFTTSHWVY 810 Query: 816 GAAYIYREQQERYLPIKFSVRERDLGSAIQEAQQKVADQVQLPPGSHLEWVGEFGNLQDA 875 G+ + R + I+ + +A + LP G +W G + + Sbjct: 811 GSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASK--LPAGIGYDWTGMSYQERLS 868 Query: 876 IKRLSIVVPISLALIGVLLWFNFGSMADTLLAMSVIPMAIFGGVVGLVLTGIPFSVSAAI 935 + +V IS ++ + L + S + + M V+P+ I G ++ L V + Sbjct: 869 GNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMV 928 Query: 936 GFIALFGIAVMDGIIILSQFNQLID-EGVDRIEAVIRTGELQLRPVLMTCVVAGIGLMPA 994 G + G++ + I+I+ L++ EG +EA + ++LRP+LMT + +G++P Sbjct: 929 GLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPL 988 Query: 995 AVSTGIGSQVQKPLAIVVVTGMMLAPAVILITLPVLISLFSRR 1037 A+S G GS Q + I V+ GM+ A + + +PV + R Sbjct: 989 AISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 82.2 bits (203), Expect = 7e-18 Identities = 70/364 (19%), Positives = 145/364 (39%), Gaps = 19/364 (5%) Query: 688 YGNDLQALTDTANK-IKQVLSTVQGVTDLAVFTSLGQPTVQIDIDRAKAARYGLAPGDIN 746 G ++D +K LS + GV D+ +F Q ++I +D +Y L P D+ Sbjct: 147 PGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG--AQYAMRIWLDADLLNKYKLTPVDVI 204 Query: 747 ATIKVA----IGGDTAGDLYEPGSDRHFPIIVRLAPEYRKSAEAIENLRIGAQGPNGITQ 802 +KV G G PG + II + K+ E + + +G + Sbjct: 205 NQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT---RFKNPEEFGKVTLRVN-SDG-SV 259 Query: 803 IPLSEVATIKLVSGAAYIYREQQERYLPIKFSVRERDLGSAIQEAQ---QKVAD-QVQLP 858 + L +VA ++L G Y + ++ +A+ A+ K+A+ Q P Sbjct: 260 VRLKDVARVEL-GGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFP 318 Query: 859 PGSHLEWVGEFGNL-QDAIKRLSIVVPISLALIGVLLWFNFGSMADTLLAMSVIPMAIFG 917 G + + + Q +I + + ++ L+ ++++ +M TL+ +P+ + G Sbjct: 319 QGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLG 378 Query: 918 GVVGLVLTGIPFSVSAAIGFIALFGIAVMDGIIILSQFNQ-LIDEGVDRIEAVIRTGELQ 976 L G + G + G+ V D I+++ + ++++ + EA ++ Sbjct: 379 TFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQI 438 Query: 977 LRPVLMTCVVAGIGLMPAAVSTGIGSQVQKPLAIVVVTGMMLAPAVILITLPVLISLFSR 1036 ++ +V +P A G + + +I +V+ M L+ V LI P L + + Sbjct: 439 QGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK 498 Query: 1037 RRVR 1040 Sbjct: 499 PVSA 502
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 30.9 bits (70), Expect = 0.007 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 17/97 (17%) Query: 487 VLSLEPDVLLLDEPTAGLTRAERQGFADILTTLARRDRLCILL--VEHDLDFVREISSRI 544 + S++ + + + A L A+ F + AR+ + +L + DF E+ Sbjct: 43 MFSVQERLEQIAKAIAHLPNAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQ--- 99 Query: 545 IVLHQGRLALDGSVDEV----------VNSELVREIY 571 + L ++ V ++S LV+E+ Sbjct: 100 --MANTNKTLASDLETVFLTTSTEYSFLSSSLVKEVA 134
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 28.6 bits (64), Expect = 0.031 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 163 GLSTKAVIMNEMLAQGLGVDSSRVRLITFALGSGLAALSGALITPLSSVDPNMGVPWLIG 222 G S K V ++ A+ L +++IT LG+G S A + S+D +MG L G Sbjct: 180 GTSHKYV--SQRAAEILNKPIESLKIITCHLGNGS---SIAAVKNGKSIDTSMGFTPLEG 234 Query: 223 AFM 225 M Sbjct: 235 LAM 237
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 71.2 bits (174), Expect = 2e-17 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 4/155 (2%) Query: 5 SRRADRAAERRAAIVQAAMDEFIARGFAATRLDDIAKRAGVAKGTIYLHFKDKESMFEEL 64 + A E R I+ A+ F +G ++T L +IAK AGV +G IY HFKDK +F E+ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 65 IRTAIVPFVGRLA--APPPVGGSVRDMVEGLARMFLQEIAGTRRADLVRLIIAEGPRFPE 122 + G + + E L + + RR L+ +I + E Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 123 --IADFYYREVVSRGLAAMRALIQLAVTRGEIREP 155 + R + + ++ + + Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPAD 157
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.7 bits (116), Expect = 9e-09 Identities = 27/184 (14%), Positives = 66/184 (35%), Gaps = 16/184 (8%) Query: 71 QQADLNQTKATLANAQQTYDRAAALSKTGAGTQATLDAAVSALRVAEAHVVTSQTRLARR 130 ++ L Q ++ + +A++ Y L K + L + + + ++ R Sbjct: 271 YKSQLEQIESEILSAKEEYQLVTQLFKNEILDK--LRQTTDNIGLLTLELAKNEERQQAS 328 Query: 131 KGVAPVAGTIQQI-YFREGEMVAAQRPVLSIMPPGN-MKLRFYVSETDLPKFAIGEEVRV 188 APV+ +QQ+ EG +V ++ I+P + +++ V D+ +G+ + Sbjct: 329 VIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAII 388 Query: 189 TCD----NCAADLTARIYFLASTAEYTPPVIYSLDERNKLVYLIQARPARPDALRVGQPV 244 + L ++ + A D+R LV+ + + + Sbjct: 389 KVEAFPYTRYGYLVGKVKNINLDA--------IEDQRLGLVFNVIISIEENCLSTGNKNI 440 Query: 245 SIYP 248 + Sbjct: 441 PLSS 444 Score = 46.4 bits (110), Expect = 5e-08 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 3/90 (3%) Query: 38 VSPDEAGRVTRLNVREGDEIKVGDPLYSVDDDLQQADLNQTKATLANAQQTYDRAAALSK 97 + P E V + V+EG+ ++ GD L + +AD +T+++L A+ R LS+ Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 98 ---TGAGTQATLDAAVSALRVAEAHVVTSQ 124 + L V+E V+ Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLT 188
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 28.2 bits (62), Expect = 0.045 Identities = 15/36 (41%), Positives = 16/36 (44%) Query: 261 GTSLHVSGHDHDALDAAIAPWRDKPGLHWQPAAPSL 296 G HVS H H AL A P R+ H P P L Sbjct: 126 GARGHVSSHSHSALHAPGTPVREGLRSHLDPRTPPL 161
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 46.9 bits (111), Expect = 5e-08 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 23/199 (11%) Query: 195 GLVGTILTMTMLIFTALSVT--REIERGTMESLLSMPIKPVEVMLGKIIPYVLVGFLQAT 252 G+V T MT F + R + T E++L ++ +++LG++ L Sbjct: 72 GMVATS-AMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGA 130 Query: 253 IIIGIGV---------LLFGVPVMGSLLLLALLSTLFIATNLSIGYTFSTLAQNQLQAMQ 303 I + LL+ +PV+ +L LA S + T L+ Y + Q Sbjct: 131 GIGVVAAALGYTQWLSLLYALPVI-ALTGLAFASLGMVVTALAPSYDYFIFYQT------ 183 Query: 304 LSMMFFLPSILLSGFMFPFLGMPQWAQIVGECLPLTHYLRIVRAIMLKGSTLPNLQH-DT 362 + P + LSG +FP +P Q LPL+H + ++R IML + QH Sbjct: 184 ---LVITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGA 240 Query: 363 IALFGLMLFAMTVAVFRFR 381 + ++ ++ F ++ A+ R R Sbjct: 241 LCIYIVIPFFLSTALLRRR 259
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 26.3 bits (57), Expect = 0.007 Identities = 12/27 (44%), Positives = 15/27 (55%) Query: 2 RAESVGGVLGAIVAAAVLAAAFYYVPV 28 AE G ++GAIVAA + A V V Sbjct: 402 TAEMAGSIVGAIVAAIAMVAVIVVVAV 428
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 46.1 bits (109), Expect = 2e-07 Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 4/100 (4%) Query: 64 APSPPAPEAPQAPQASQAPQASQAPQASQA-PETPLVADPPLTSEAPQASEQPQAAKVPE 122 AP+ P AP + PQA Q P PE P EAP E+P+ Sbjct: 45 APAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP---KP 101 Query: 123 AAKPQQASKPVQAVRPPQATKPPQASKPPQAGKPVPPPSD 162 KP+ K Q R + + AS P S Sbjct: 102 KPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSST 141 Score = 43.4 bits (102), Expect = 1e-06 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%) Query: 60 LSGTAPSPPAPEAPQAPQASQAPQASQAPQASQAPETPLVADPPLTSEAPQASEQPQAAK 119 +S T +P E PQA Q P P+ PE P + P+ E P+ +P+ Sbjct: 50 ISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP--KEAPVVIEKPKPKPKPKPKP 107 Query: 120 VPEAAKPQQASKPVQAVRPPQATKPPQASKPPQAG 154 V + +P++ KP RP + ++P + Sbjct: 108 VKKVEQPKRDVKP-VESRPASPFENTAPARPTSST 141 Score = 39.6 bits (92), Expect = 2e-05 Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 5/99 (5%) Query: 65 PSPPAPEAPQAPQASQAPQASQAPQASQAPETPLVADPPLTSEAPQASEQPQAAKVPEAA 124 P A + P P P+ P+ E P+V + P P+ KV + Sbjct: 61 EPPQAVQPPPEPVVEPEPEPEPIPEPP--KEAPVVIEKPKPKPKPK---PKPVKKVEQPK 115 Query: 125 KPQQASKPVQAVRPPQATKPPQASKPPQAGKPVPPPSDE 163 + + + A S A P S Sbjct: 116 RDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVA 154 Score = 38.8 bits (90), Expect = 5e-05 Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 4/88 (4%) Query: 92 QAPETPLVADPP-LTSEAPQASEQPQAAKVPEAAKPQQASKPVQAVRPPQATKPPQASKP 150 Q E P A P +T AP E PQA + P + + P+ K Sbjct: 39 QVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEP---EPEPEPIPEPPKEAPVVIE 95 Query: 151 PQAGKPVPPPSDEDDEEDDEDDLDDDDD 178 KP P P E + D+ + Sbjct: 96 KPKPKPKPKPKPVKKVEQPKRDVKPVES 123 Score = 33.8 bits (77), Expect = 0.002 Identities = 18/94 (19%), Positives = 25/94 (26%), Gaps = 15/94 (15%) Query: 71 EAPQAPQASQAPQASQAPQASQAPETPLVADPPLTSEAPQASEQPQAAKVPEAAKPQQAS 130 + + P +Q + A P P PP P +P+ +PE K Sbjct: 39 QVIELPAPAQPISVTMVAPADLEP--PQAVQPP---PEPVVEPEPEPEPIPEPPKEA--- 90 Query: 131 KPVQAVRPPQATKPPQASKPPQAGKPVPPPSDED 164 P KP KP D Sbjct: 91 -------PVVIEKPKPKPKPKPKPVKKVEQPKRD 117
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.2 bits (96), Expect = 8e-06 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 2/101 (1%) Query: 186 RREARLQQKLAEATEVVEELKREVDADPEASNRRIRAARERAAREHKQKVEAAQAALEEI 245 + E + A+ EV +E K V A+ + + + + + + K A E+ Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 246 KRKRQKLEE--KGGNGKKPKEPRASTTDPQARRMKMADAGF 284 K + +K +E K + PK+ ++ T PQA + D Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 612 bits (1579), Expect = 0.0 Identities = 177/670 (26%), Positives = 297/670 (44%), Gaps = 63/670 (9%) Query: 11 RNFGIMAHIDAGKTTTTERILYYTGKSHKIGEVHEGAATMDWMEQEQERGITITSAATTA 70 N G++AH+DAGKTT TE +LY +G ++G V +G D E++RGITI + T+ Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63 Query: 71 FWNGKRLNIIDTPGHVDFTIEVERSLRVLDGAVCVLDSNQGVEPQTETVWRQGDKYKVPR 130 W ++NIIDTPGH+DF EV RSL VLDGA+ ++ + GV+ QT ++ K +P Sbjct: 64 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT 123 Query: 131 IVFANKMDKTGADFFKCLSDIVDRLGAKPVAIQLPIGAENNFKGCIDLVTMKAIVWNDES 190 I F NK+D+ G D DI ++L A+ V Q Sbjct: 124 IFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ--------------------------- 156 Query: 191 LGAKFDHVEIPAELADQAKEYREKLVEAAVELDDDALTAFLDGKEPDEATLKQLIRKAVL 250 + + +++++ + +E +DD L ++ GK + L+Q Sbjct: 157 --KVELYPNMCVTNFTESEQW-----DTVIEGNDDLLEKYMSGKSLEALELEQEESIRFH 209 Query: 251 TGAFYPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGTDDRGNEVVRKADDKEPLSL 310 + +PV GSA N G+ L++ + + S + L Sbjct: 210 NCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH------------------RGQSELCG 251 Query: 311 LAFKIMDDPFVGTITFCRIYSGILTSGTGVVNSTREKKERIGRMLLMHANNREDIKEAYA 370 FKI + + R+YSG+L V S +EK +I M I +AY+ Sbjct: 252 KVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGELCKIDKAYS 310 Query: 371 GDIVALAG--LK-EARTGDTLCDPNNQVILEKMEFPEPVIEIAIEPKSKADQEKLGIALA 427 G+IV L LK + GDT P E++E P P+++ +EP +E L AL Sbjct: 311 GEIVILQNEFLKLNSVLGDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLLDALL 366 Query: 428 KLAAEDPSFRVSTDHESGQTILKGMGELHLDIKVDILKRTYKVDANIGAPQVAFRERITK 487 +++ DP R D + + IL +G++ +++ +L+ Y V+ I P V + ER K Sbjct: 367 EISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERPLK 426 Query: 488 PANVDYTHKKQTGGTGQFAAVSLVVEPNEPGGGYVFESKIVGGAVPKEYIPGVEKGIESV 547 +YT + +A++ L V P G G +ES + G + + + V +GI Sbjct: 427 --KAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYG 484 Query: 548 LGAGVVAGFPVVDVKVALVDGKYHDVDSSALAFEIASRAAFREALQKGKSVLLEPIMKVE 607 G + G+ V D K+ G Y+ S+ F + + + L+K + LLEP + + Sbjct: 485 CEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFK 543 Query: 608 VVTPEDYTGSVIGDLNSRRGQIQGQDMRGNANVINAMVPLMNMFGYVNNLRSMSQGRATF 667 + P++Y D I ++ N +++ +P + Y ++L + GR+ Sbjct: 544 IYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGRSVC 603 Query: 668 TMQFSHYAEA 677 + Y Sbjct: 604 LTELKGYHVT 613
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 84.9 bits (210), Expect = 6e-20 Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 23/193 (11%) Query: 14 NIGTIGHVDHGKTSLT-------AAITKILAETGGATFTAYDQIDKAPEEKARGITISTA 66 NIG + HVD GKT+LT AIT++ + G T T D E+ RGITI T Sbjct: 5 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRT-----DNTLLERQRGITIQTG 59 Query: 67 HVEYETQNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV 126 ++ +N +D PGH D++ + + +DGAIL++SA DG QTR R++ Sbjct: 60 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 119 Query: 127 GVPALVVFLNKCDM--VDDPELLELVELEVRELLSKYEFPGDKIPIIKGSALAALEDSDK 184 G+P + F+NK D +D + + +++E LS K+ + + +S++ Sbjct: 120 GIPT-IFFINKIDQNGIDLSTVYQ----DIKEKLSAEIVIKQKVELYPNMCVTNFTESEQ 174 Query: 185 K----LGHDAILE 193 G+D +LE Sbjct: 175 WDTVIEGNDDLLE 187
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.0 bits (96), Expect = 6e-06 Identities = 34/162 (20%), Positives = 71/162 (43%), Gaps = 3/162 (1%) Query: 226 LLIFAICVALFHLANAAMLPLVGQKLALQDKNLGTSLMSACIAAAQVVMVPMALLVGARA 285 +LI+ ++ F + N +L + +A D N + + A + + G + Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIA-NDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 286 DRWGHKRFFLAALLILPLRAVLYTLSDDKA-WLVGVQLLDGVGAGIFGAIMPVIVADLMR 344 D+ G KR L ++I +V+ + L+ + + G GA F A++ V+VA + Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 345 GTGRFNVAQGAVITAQSIGAALSTAMAGLVVVHGGYSAAFLV 386 R A G + + ++G + A+ G++ + +S L+ Sbjct: 134 KENR-GKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI 174 Score = 29.1 bits (65), Expect = 0.037 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 12/132 (9%) Query: 65 PAGALVDATRAKRMIMIVAAIIVTAASLALPLMSSFWPVAISQSIANAAGVIFAPAIAAV 124 G L D KR+++ II S+ + SF+ + I AG A A A+ Sbjct: 68 VYGKLSDQLGIKRLLLF-GIIINCFGSVIGFVGHSFFSLLIMARFIQGAG---AAAFPAL 123 Query: 125 SLGIVGARAFTARIGRNETFN------HAGNAVGAVIAGAAAYALGPSAVFYLMAVTSAG 178 + +V + + R + F G VG I G A+ + S + + +T Sbjct: 124 VMVVVAR--YIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIIT 181 Query: 179 SLISVLAIPERA 190 + + + Sbjct: 182 VPFLMKLLKKEV 193
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 470 bits (1212), Expect = e-166 Identities = 178/472 (37%), Positives = 257/472 (54%), Gaps = 39/472 (8%) Query: 2 ATILIVDDDAALRDGLAETLTDLGHDTLTAASGREAIGMVSAET-DAILLDLRMPGIDGI 60 ATIL+ DDDAA+R L + L+ G+D ++ ++A D ++ D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 61 ETLRRIRADAEAPPVIVLTAYASPENTIEAMRLGAFDHLVKPIGRDALRELIER---LPP 117 + L RI+ PV+V++A + I+A GA+D+L KP L +I R P Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 118 RTRPQQDIRGRDDSGLIGTSEAMRRVQKIIGLAADADATVLIRGETGTGKELVARALHVH 177 R + + +D L+G S AM+ + +++ D T++I GE+GTGKELVARALH + Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183 Query: 178 SRRSASPFIAVNCAAIPQDLLESELFGHVKGSFTGATSDRSGAFRDAGAGTLFLDEIGDM 237 +R PF+A+N AAIP+DL+ESELFGH KG+FTGA + +G F A GTLFLDEIGDM Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 238 PPAMQAKILRALQERVIAPVGG-KPVRVAARVVAATHRDLARQVASGAFREDLYYRLNVI 296 P Q ++LR LQ+ VGG P+R R+VAAT++DL + + G FREDLYYRLNV+ Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303 Query: 297 PIELPPLRERSEDILLLAGHFLALAA-NGRARPQLSEAAIDKLVRAPWPGNVRELRNVIE 355 P+ LPPLR+R+EDI L HF+ A G + + A++ + PWPGNVREL N++ Sbjct: 304 PLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVR 363 Query: 356 RACVLTRGGLIEAEDIDI---------------------------------AAAPIAEDI 382 R L +I E I+ A + + Sbjct: 364 RLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDAL 423 Query: 383 DPATDLPAAVARLEERMIRRALADCSGNRTEAARQLNINRQLLYTKMQRYGL 434 P+ +A +E +I AL GN+ +AA L +NR L K++ G+ Sbjct: 424 PPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 8e-05 Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 35/176 (19%) Query: 339 LAMTQASRPATRAVDLAAFLHATIET--------HRELA----------ARRG--LELHM 378 L + ++ L+ + ++ EL + L+ Sbjct: 185 LILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFEN 244 Query: 379 RAPSATEAACFDPVQMQRALDNLILNAIQNAPERSEIVVAAEIQDARLLFRVIDSGPGVD 438 + A P+ +Q ++N I + I P+ +I++ + + V ++G Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLAL 304 Query: 439 ARIKDRLFEPFVSSRAEGTGLGLAIVREIARAHHGE---VQLAHTRHGSSFEISLP 491 K E TG GL VRE + +G ++L+ + + + +P Sbjct: 305 KNTK------------ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.2 bits (172), Expect = 1e-14 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 5/119 (4%) Query: 739 RVLVVEDNDEVGQFSTELLEDLGYVTRRVSNAQDALAILADNEFAVDLVFSDVIMPGING 798 +LV +D+ + + L GY R SNA +A + DLV +DV+MP N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG--DLVVTDVVMPDENA 62 Query: 799 LELAGIIRERFPGLPVVLTSGYSHVLA--ENAHHG-FELIKKPYSVESLSRILRKAMAE 854 +L I++ P LPV++ S + + + + G ++ + KP+ + L I+ +A+AE Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.037 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 611 VVTAGDSGKKLLCPMPGLVVSIAVTEGQEVKAGETLAVIEA 651 + +G S K++ +V I V EG+ V+ G+ L + A Sbjct: 90 LTHSGRS-KEIKPIENSIVKEIIVKEGESVRKGDVLLKLTA 129
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 28.2 bits (63), Expect = 0.031 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 14/112 (12%) Query: 71 TDLNEPMLMQARTHLAGADRISFQQAD-----ALALPFADASFDVV---ACQFGVMFFPD 122 D + L QAR L F + D + FA F+ V + V + + Sbjct: 34 NDYYDVSLKQARLELLAQPGFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLE 93 Query: 123 RVKGYAEARRVLRPGGRFVFNVWDRIEDNEFAHVVHETLQQIFSDNPPQFFT 174 YA++ N+ + N+ H+++ + ++ N F+ Sbjct: 94 NPHAYADSNLT------GFLNILEGCRHNKIQHLLYASSSSVYGLNRKMPFS 139
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.2 bits (130), Expect = 2e-11 Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 6/157 (3%) Query: 1 MRKTREQTAESKAKIIDTAAHLLRERGVAEASIADVMAAAGMTQGGFYRHFTSKNDMLTA 60 RKT+++ E++ I+D A L ++GV+ S+ ++ AAG+T+G Y HF K+D+ + Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 A---TRHAFAIMADGMDRDIETAGAEAALAAYVARYLSPEHIAH-PGAGCPAAGFGADAG 116 + + + S G Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 117 RMPDVLGAEFAAGAEQLITRVAAGLVARGHAEPEARA 153 M V A+ + A Sbjct: 122 EMAVVQQAQ--RNLCLESYDRIEQTLKHCIEAKMLPA 156
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 57.4 bits (138), Expect = 8e-12 Identities = 49/186 (26%), Positives = 70/186 (37%), Gaps = 11/186 (5%) Query: 20 GATAVVTGASDGIGRAVAMRLAQAGFGLVLVARRKAVLDALADELEALQSIRPVVISADL 79 G A +TGA+ GIG AVA LA G + ++ AD+ Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQG-AHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 80 SVPDDV----ARIDRDTAHLDVGLLVAAAGFGTSGPFVDGDLTAELNMIDVNCRALAQLT 135 + ARI+R+ +D+ LV AG G VN + + Sbjct: 67 RDSAAIDEITARIEREMGPIDI--LVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 136 HMFGRRFAARRRGGIVLMSSLVAFQGVPRA--ANYAATKAFVQSLAEGLAPELKPFGVDV 193 + RR G IV + S A GVPR A YA++KA + L EL + + Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 194 LASAPG 199 +PG Sbjct: 183 NIVSPG 188
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 39.6 bits (92), Expect = 2e-06 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 19/151 (12%) Query: 36 LDLDRYSGTWFQLRDSVDDNAAEFEQR-EKVKDRCVGTRVTYAAQADGTIRLRNECFEGS 94 +L+ Y G W+++ A + E+ + Y + DG I + N + Sbjct: 29 FELNNYLGKWYEV--------ARLDHSFERGLSQVTAE---YRVRNDGGISVLNRGYSEE 77 Query: 95 LDGRRIVIEGSARPVNA-NRTEFKIRFDPLYLRPFEFDYWVVWVD-PDYQMALLSSPRSR 152 G EG A VN K+ F PF Y V +D +Y A +S P + Sbjct: 78 -KGEWKEAEGKAYFVNGSTDGYLKVSF----FGPFYGSYVVFELDRENYSYAFVSGPNTE 132 Query: 153 GYTILSRVPDPSPALLAMAEEVALRKGYSNS 183 +LSR P +L E++ +G+ + Sbjct: 133 YLWLLSRTPTVERGILDKFIEMSKERGFDTN 163
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 28.2 bits (63), Expect = 0.002 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 2/58 (3%) Query: 1 MHEAARTRVCADTEKAPSVAGGACSGNAICYRMRPGDDPPELVVAVVIDMERRLRIRA 58 E + + +++ V + AI + G+ P LV D + +R Sbjct: 242 HQEIQSRNMRENVKRSSVVVANP-THIAIGILYKRGETPLPLVTFKYTD-AQVQTVRK 297
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 46.2 bits (109), Expect = 4e-07 Identities = 50/299 (16%), Positives = 105/299 (35%), Gaps = 21/299 (7%) Query: 286 PPAAHPEQTGQTRAQDVANDLKPAIAETPASSAE---ANTAVEPAPVLANQPAEAVQVAP 342 P QT T N+++ + P+++ E + A P P A VA Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 343 IEKTTEAPTKSEVTGSTDLTAADAKASDTKASDTKASDTKSADV--KPADAKNSEQPVAP 400 K + +T+ TA + + + S+ KA +T++ +V ++ K ++ Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKA-NTQTNEVAQSGSETKETQTTETK 1101 Query: 401 STATVEAPARPVDDKDVSKDQSRVAAPDKP-------IAPKPELKRNSQIAIFISRKDSK 453 TATVE + + + +++ +V + P + P+ E R + + I S+ Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 454 LYVRQNFAPVFNTPIAIAPSDKPLGTHVFTAAADKADPATMRWSVISLPATARSVAASEG 513 N P S+ V + + + + PAT + SE Sbjct: 1162 ----TNTTADTEQPAKETSSNVE--QPVTESTTVNTGNSVVENPENTTPATTQPTVNSES 1215 Query: 514 ADKAVRRGKKS--AEAKVDAKPVVLQSSPAEALDRITIPADIMAWLGEALSAGSSLIVS 570 ++K R ++S + + + + A L +A + + ++ Sbjct: 1216 SNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALN 1274 Score = 32.7 bits (74), Expect = 0.005 Identities = 37/243 (15%), Positives = 77/243 (31%), Gaps = 23/243 (9%) Query: 305 DLKPAIAETPASSAEANTAVEPAPVLANQPAEAVQVAPIEKTTEA----PTKSEVTGSTD 360 DL E + + P + A+ P+ I + EA P + + +T+ Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 361 LTAADAK--ASDTKASDTKASDTKSADVKPADAKNSEQPVAPSTATVEAPARPVDDKD-- 416 A ++K + + ++ A++T + + + A S T V + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 417 VSKDQSRVAAPDKPIAPKPELKRNSQIAIFISRKDSKLYVRQNFAPVFNTPIAIAPSDKP 476 +K+ + V +K + + ++ +S K + + P +P Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ-------------SETVQPQAEP 1145 Query: 477 LGTHVFTAAADKADPATMRWSVISLPA--TARSVAASEGADKAVRRGKKSAEAKVDAKPV 534 + T + T + PA T+ +V V G E + P Sbjct: 1146 ARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPA 1205 Query: 535 VLQ 537 Q Sbjct: 1206 TTQ 1208
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.9 bits (103), Expect = 3e-07 Identities = 48/245 (19%), Positives = 77/245 (31%), Gaps = 21/245 (8%) Query: 10 TLQLALATAAILLPVKAFAEAPMTARQMLAQAQTQALNLPSEAKKSEPEKSVGEPVVPPA 69 T Q VKA + A+ +TQ A + EK+ E Sbjct: 1062 TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVE-TEKTQ 1120 Query: 70 VAPTLAAPLPVVEPPAPISPQPITLSALAVPAMP-EPVAAQTRTNSLTASAPAVETVKAP 128 P + + + P Q T+ A PA +P S T + E Sbjct: 1121 EVPKVTSQVS------PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 129 NAVAAVPPVAATTTAETRVETPAAPPVAAAPAPTTPSAAAPVAAPTKASAPTA----TVA 184 + PV +TT T V P TTP+ P ++ P +V Sbjct: 1175 TSSNVEQPVTESTTVNT------GNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVR 1228 Query: 185 PSPQVQTAPSSSSSAKPAKAQR---PSNTAPARVAHQSAPRSAARSDEAAIGSQISRIMR 241 P ++SS+ + A +NT ++ + A + A+ IS++ Sbjct: 1229 SVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEM 1288 Query: 242 RPEVQ 246 E Q Sbjct: 1289 NNEGQ 1293 Score = 35.0 bits (80), Expect = 3e-04 Identities = 36/214 (16%), Positives = 61/214 (28%), Gaps = 17/214 (7%) Query: 38 LAQAQTQALNLPSEAKKSEP--EKSVGEPVVPPAVAPTLAAPLPVVEPPAPISPQPITLS 95 L + + N + P VP V PPAP +P + Sbjct: 980 LYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSE---T 1036 Query: 96 ALAVPAMPEPVAAQTRTNSLTASAPAVETVKAPNAVAAVPPVAATTT----AETRVET-P 150 V + + N A+ + + A A V A T A++ ET Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREV--AKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 151 AAPPVAAAPAPTTPSAAAPVAAPTKASAPTATVAPSPQVQTAPSSSSSAKPAKAQRPSNT 210 A A V P T SP+ + + + A+PA+ P+ Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 211 APARVAHQSAPRSAARSDEAAIGSQISRIMRRPE 244 + + +D + S + +P Sbjct: 1155 IKEPQSQTNTT-----ADTEQPAKETSSNVEQPV 1183
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 314 bits (805), Expect = e-105 Identities = 86/424 (20%), Positives = 172/424 (40%), Gaps = 2/424 (0%) Query: 28 RYAMLGYASIALVFGGFGVWAGFAPLDRAAIAPGTVSVSGDHKVVQHREGGIVREILAKE 87 R L I + + ++ A A G ++ SG K ++ E IV+EI+ KE Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKE 114 Query: 88 TNAVHRGDLLFRLQPTEAQANTDLLRKQMDAALAEEARLLAERGNARMITFPDTLLNRQN 147 +V +GD+L +L A+A+T + + A E+ R + + P+ L + Sbjct: 115 GESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEP 174 Query: 148 VPEAAMA--IADQQRLFVERRNGLISQINILNSQIVQQQQELAGRDRQRTALAAQLASFD 205 + + L E+ + +Q + +++ E + Sbjct: 175 YFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEK 234 Query: 206 TQMNNVRPAVAAGYYPRNKFLELERDRARVEGDLGQAQADVARLTQTAAQTRLQIDQSLQ 265 +++++ + ++ LE E +L ++ + ++ + + Q Sbjct: 235 SRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQ 294 Query: 266 KYQTEVGQQLDATRAKLSDLREKIVIAEDVLRRVDIYAERDGIVMNMKVHTIGEVVKPGD 325 ++ E+ +L T + L ++ E+ + I A V +KVHT G VV + Sbjct: 295 LFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE 354 Query: 326 TLAEIVPVGEGVDVMAHVSPRDIESVAIGQKAEVRFANFSSRTTPAIFGKVASVSADAVS 385 TL IVP + ++V A V +DI + +GQ A ++ F + GKV +++ DA+ Sbjct: 355 TLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIE 414 Query: 386 DEASKQSYYKARVVIDYSTIPPEIAEKILPGMQADVIISTGERTVLEYLVGPLLNTLAKT 445 D+ + + + + GM I TG R+V+ YL+ PL ++ ++ Sbjct: 415 DQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTES 474 Query: 446 FREK 449 RE+ Sbjct: 475 LRER 478
>cloacin#Cloacin signature. Length = 551 Score = 42.8 bits (100), Expect = 4e-06 Identities = 33/102 (32%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 479 GGDNAGGGNEGGGHEGSGNEGGGSGEGAGNGNGGGESGMPDPEGSGSGGVNSSPNPDGGD 538 GGD G G+ G H SGN GG G SG GG S + GG Sbjct: 3 GGD--GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 539 TDGNDGNSHISVVGHGHGGGGDGSGEGVGDLGDMLGAPGSHG 580 GN G + S G G GG V L PG+ G Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 41.2 bits (96), Expect = 1e-05 Identities = 27/76 (35%), Positives = 34/76 (44%) Query: 456 GHDNGGSSGGGEANNGDHGGNSGGGDNAGGGNEGGGHEGSGNEGGGSGEGAGNGNGGGES 515 GH+ G S G N G G GGG + G G + G G G G G+G+G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 516 GMPDPEGSGSGGVNSS 531 GSG+GG S+ Sbjct: 68 NGNSGGGSGTGGNLSA 83 Score = 40.5 bits (94), Expect = 2e-05 Identities = 26/75 (34%), Positives = 32/75 (42%) Query: 450 GGLFSGGHDNGGSSGGGEANNGDHGGNSGGGDNAGGGNEGGGHEGSGNEGGGSGEGAGNG 509 G +GG G GG +G N+ G +G G GG G GN GG G G+G Sbjct: 17 SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSG 76 Query: 510 NGGGESGMPDPEGSG 524 GG S + P G Sbjct: 77 TGGNLSAVAAPVAFG 91 Score = 29.7 bits (66), Expect = 0.043 Identities = 21/60 (35%), Positives = 25/60 (41%) Query: 436 GAVGDAIGGVVDAIGGLFSGGHDNGGSSGGGEANNGDHGGNSGGGDNAGGGNEGGGHEGS 495 G G +GG G S + GG SG G G G +GGG+ GG G G S Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLS 82
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 102 bits (254), Expect = 4e-28 Identities = 75/254 (29%), Positives = 118/254 (46%), Gaps = 6/254 (2%) Query: 7 LDGRVAVVTGAAGVIGRATMQLLAARGARIVAIDRREADLHDATRALPAVAETL-AISAD 65 ++G++A +TGAA IG A + LA++GA I A+D L +L A A A AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 66 VTDEAQVIGYVRKTCDRFGTIDVFFNNAGVEGEIKSITDYPLDAFRRVLDVNVVGVFLGL 125 V D A + + G ID+ N AGV I + + VN GVF Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 126 KHVLPIMLKQNRGSIINTASIAGLIGSPQIAVYSASKHAVIGLTKSAAWECTGTNVRVNC 185 + V M+ + GSI+ S + +A Y++SK A + TK E N+R N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 186 ICPGLIDSRMLSAIIEGRSGAPVPVDKVVDR----VPARRLGQGSEVAAIVAFLASDDAS 241 + PG ++ M ++ +GA + ++ +P ++L + S++A V FL S A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 242 YVSGAAYTVDGGRT 255 +++ VDGG T Sbjct: 245 HITMHNLCVDGGAT 258
>PERTACTIN#Pertactin signature. Length = 922 Score = 40.9 bits (95), Expect = 5e-06 Identities = 22/53 (41%), Positives = 26/53 (49%) Query: 260 ASAAPEQKPAPQPQPQPAQKRPPQQKQAAPRPPGPPPQYQTQQVPPPPPPPQA 312 A A P KPAPQP PQP + P + P P PPQ Q + P PP + Sbjct: 565 AKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRE 617 Score = 37.0 bits (85), Expect = 9e-05 Identities = 21/55 (38%), Positives = 24/55 (43%) Query: 256 QNTVASAAPEQKPAPQPQPQPAQKRPPQQKQAAPRPPGPPPQYQTQQVPPPPPPP 310 Q ++ A P P PQP P P Q P+PP PP Q Q P P PP Sbjct: 559 QWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPP 613 Score = 34.7 bits (79), Expect = 5e-04 Identities = 18/47 (38%), Positives = 21/47 (44%) Query: 268 PAPQPQPQPAQKRPPQQKQAAPRPPGPPPQYQTQQVPPPPPPPQAGG 314 PAP+P PQP + PQ Q P P P Q+ P P P G Sbjct: 569 PAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAG 615
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.0 bits (213), Expect = 1e-20 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Query: 4 SAPTLLYIEDDAALARLVERGLKRLGITVEHAPDGSAGLERLQRGGIDVVALDQHMPGLD 63 + T+L +DDAA+ ++ + L R G V + + + G D+V D MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 64 GLETLERIMALPEPPPVVFVTASQDSKIAVTALKAGAADYLVKDVQGEFIPLLQVAAEGA 123 + L RI PV+ ++A A+ A + GA DYL K + L A Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD---LTELIGIIGRA 118 Query: 124 LRQARLQRARDEAEAE 139 L + + + ++ E +++ Sbjct: 119 LAEPKRRPSKLEDDSQ 134
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 52.5 bits (126), Expect = 5e-11 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 13/126 (10%) Query: 6 TIIMIEDDEGHARLIERNIRRSGVNNEIKPFTNGTDAVKYLLGPDGTGLEHKGHALLILL 65 TI++ +DD ++ + + R+G + I +N +++ G L++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI--TSNAATLWRWIA---------AGDGDLVVT 53 Query: 66 DLNLPDMTGIDILKMVKQNSFLKSAPVVILTTTDDSQEIKRCYELGCNVYITKPVNYESF 125 D+ +PD D+L +K PV++++ + + E G Y+ KP + Sbjct: 54 DVVMPDENAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111 Query: 126 ANAIRQ 131 I + Sbjct: 112 IGIIGR 117
>PF06580#Sensor histidine kinase Length = 349 Score = 41.8 bits (98), Expect = 5e-06 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 21/102 (20%) Query: 398 LIDNAIKY-MKPSV-PGDIRIRARTKLGFAIFEVADNGRGIDPRDHQRIFDLFRRAGTQD 455 L++N IK+ + G I ++ G EV + G + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 456 RPGQGIGLAHVRALVRRLGG---TMSVASELDQGSTFTITLP 494 G GL +VR ++ L G + ++ + + +P Sbjct: 310 --STGTGLQNVRERLQMLYGTEAQIKLSEK-QGKVNAMVLIP 348
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.001 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Query: 105 FVEVGSKVSVGQTLMIIEAMKTMNQIPSPRAGTVTQVLVEDGQPVEFGEPLVIIE 159 +V + L K I V +++V++G+ V G+ L+ + Sbjct: 77 LGQVEIVATANGKLTHSGRSKE---IKPIENSIVKEIIVKEGESVRKGDVLLKLT 128
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 36.0 bits (83), Expect = 1e-04 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 12/85 (14%) Query: 278 VLGQYIVNRLNAPLTFAPQGEVASISAMGFAATLIGKLDMFRETSGFAPSTMNSFAALTK 337 ++G ++ L P + + A+ L LDM++ + P+T +L + Sbjct: 21 IIG--VLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHYPTTNQGLESLVE 78 Query: 338 APSTKAPPLA----------PVSPW 352 AP+ P PW Sbjct: 79 APTLPPLAANYNKEGYIKRLPADPW 103
>SECA#SecA protein signature. Length = 901 Score = 46.4 bits (110), Expect = 4e-07 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 13/120 (10%) Query: 292 LRLLQGDV-----GSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHAKTIAPLAERAG 346 + L + + G GKT+ A L A A GK ++ + LA++ A+ PL E G Sbjct: 92 MVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLG 151 Query: 347 MSVAILTGREKVKERRDILAR-------LEAGEIDVLIGTHALIQDDVMFKSLALAIVDE 399 ++V I +R+ A E G D L A ++ + + L A+VDE Sbjct: 152 LTVGINLPGMPAPAKREAYAADITYGTNNEYG-FDYLRDNMAFSPEERVQRKLHYALVDE 210
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 25.5 bits (55), Expect = 0.025 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 14 LILGRFADAEIGTLTESELDQLEQLLEVSDPDFYAAITGARPLPPEQ--TPAL 64 LIL F+ A + +T L + + L S PD A+IT P+ E+ PAL Sbjct: 2 LILNGFSSATLALITPPFLPKGGKALSQSGPDGLASITLPLPISAERGFAPAL 54
>SECA#SecA protein signature. Length = 901 Score = 31.4 bits (71), Expect = 0.028 Identities = 29/114 (25%), Positives = 39/114 (34%), Gaps = 22/114 (19%) Query: 653 GFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTE--RFRGFPVNVAQASRLVS 710 G GKT A A+ AL GK V VV LA++ A+ F G V + Sbjct: 105 GEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG---M 161 Query: 711 TKELNQVKKGLADGSVDIVVGTHALLG------------KTVKFRDLGLVIVDE 752 + + DI GT+ G + R L +VDE Sbjct: 162 PAPAKR-----EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDE 210
>PF06776#Invasion associated locus B Length = 214 Score = 140 bits (355), Expect = 2e-43 Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 20/219 (9%) Query: 1 MASSVGPRGRLVALLAVTALAVSFASEVQAQAQPPAAPKAKAPAPAAPKAPAPAAQAPAA 60 + + P + + + L+ AS + + A A + + Sbjct: 16 VTNHAVPALKAIQMGPAE-LSPMLASCRRLARRNGARLML------AGAMAIALSFGWSD 68 Query: 61 PPAAGQPQQQAQQQEMPQLIYAPWTKFCLKGQDANAKQVCFIGKDGRIESGQPVVAAVII 120 A Q + ++ W C A A+Q I + + +I+ Sbjct: 69 RADA---------QGAVRSVHGDWQIRCDTPPGAKAEQCALIQSVVAEDRSNAGLTVIIL 119 Query: 121 EPEGEPKKILRVTLPLGMQLQPGTRIVVDSNQALQSPYVICFQNGCMSDYEATADFLGSL 180 + + K++RV PLG+ L G + +D+ ++ +V C NGC+++ LG L Sbjct: 120 KTADQKSKLMRVVAPLGVLLPSGLGLKLDNVDVGRAGFVRCLPNGCVAEVVMDDKLLGQL 179 Query: 181 KKGQTLYVQAINSNGTALTLPLPLQEGNSSFAKAYDGPP 219 + +T + + PL L + YD P Sbjct: 180 RTAKTATFIIFETPEEGIGFPLSLNG----IGEGYDKLP 214
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.0 bits (93), Expect = 1e-05 Identities = 24/177 (13%), Positives = 51/177 (28%), Gaps = 11/177 (6%) Query: 53 RIDPDRGTVQIPGVYDNTEQKKPKRAKRDQDTAA--RPQPGADKPAQAPAEAAVTPSTPA 110 + + T ++ T++ + K + + +K + P + Sbjct: 1075 NVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQE 1134 Query: 111 QAPAASPPAAVPAAPAPT-----AAVPVSPPPAPVAPAPVAPAPVQAAVPSAAVAAPAAP 165 Q+ P A PT + PA + V+ V + Sbjct: 1135 QSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST----TVN 1190 Query: 166 APAAAPLTPPAGAPTVAAPVAPPPAAVQPQPRPAQAPATVATTVAPPPSVRDQNSPV 222 + P P P ++ +P+ R ++ +V V P + + S V Sbjct: 1191 TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 29.5 bits (66), Expect = 0.018 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 10/78 (12%) Query: 230 EQTRAQVRQIVDNTAELVELGRKVRDDEIVILNDYAYPAYGVPSAETNEAIRLAARTEAM 289 A++ I + V L + R + + + + + GVP A+ NE + R Sbjct: 129 PGYNAKIVSI---RPDRVVLQYQGRYEVLGLYSQEDSGSDGVPGAQVNEQL--QQRASTT 183 Query: 290 ITD-----PVYEGKSMQG 302 ++D P+ +QG Sbjct: 184 MSDYVSFSPIMNDNKLQG 201
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 480 bits (1236), Expect = e-164 Identities = 172/666 (25%), Positives = 294/666 (44%), Gaps = 66/666 (9%) Query: 1 MAHVDAGKTTLTERILLDTGKIHQAGDVHTGNTETDSHALEKKHGITISAAAISCEWRDA 60 +AHVDAGKTTLTE +L ++G I + G V G T TD+ LE++ GITI S +W + Sbjct: 9 LAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENT 68 Query: 61 FITIIDTPGHVDFQIEVERSLRVLDGAIAVFSAVSGVEPQSETVWRQADRLGVPRLCFVN 120 + IIDTPGH+DF EV RSL VLDGAI + SA GV+ Q+ ++ ++G+P + F+N Sbjct: 69 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFIN 128 Query: 121 KMDQVGADLQRTVEMIADRLGATPLVLQLPLRGEDGFAGVVDLVAMKALYWDGAQPQPSA 180 K+DQ G DL + I ++L A ++ Q Sbjct: 129 KIDQNGIDLSTVYQDIKEKLSAEIVIKQ------------------------------KV 158 Query: 181 GAIPEELRSAAERQRQRLLETLADQDAAIMAAYVGGETISAADLKAAIRRACLAGRLTPV 240 P +T+ + + ++ Y+ G+++ A +L+ L PV Sbjct: 159 ELYPNMC--VTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPV 216 Query: 241 LCGSAYRNVGVHPLLDAIVDYAPGPEDRPAVAGLDPRSGAAEHRLPRADQPFAALVSKVQ 300 GSA N+G+ L++ I + R V K++ Sbjct: 217 YHGSAKNNIGIDNLIEVITNKFYSS-------------------THRGQSELCGKVFKIE 257 Query: 301 -ASRFGTLAFVRVYAGRVTAGTSVTNATSDRTERIGRLLRMQADAQIEIDEARAGDVVAV 359 + + LA++R+Y+G + SV + ++ +I + +ID+A +G++V + Sbjct: 258 YSEKRQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKAYSGEIVIL 316 Query: 360 VG----LKSVVAGDTLSDPAHPIVLDGFVIPEPVIEAVVEPRLGQDQERLGQALALMARS 415 L SV+ GDT P + + P P+++ VEP Q +E L AL ++ S Sbjct: 317 QNEFLKLNSVL-GDTKLLPQRERIEN----PLPLLQTTVEPSKPQQREMLLDALLEISDS 371 Query: 416 DPSLRVVVDADSGQTLLRGMGELHLQIAVERLKEDYNVDAVIGAPEVAYRAAASRPSEVD 475 DP LR VD+ + + +L +G++ +++ L+E Y+V+ I P V Y + +E Sbjct: 372 DPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERPLKKAE-- 429 Query: 476 HTLRKQSGGPGQMARVRLAFAPLEEGGEGLVFVDETVGGAIPREFIPSIEKALRQSLRDG 535 +T+ + A + L+ +PL G G+ + G + + F ++ + +R G Sbjct: 430 YTIHIEVPPNPFWASIGLSVSPLPLG-SGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG 488 Query: 536 GPGGYPVLGQQVTLLDGAFHQKDSSGLAFELATREAFRIGFERAAPILLEPVMRVVVTTP 595 G+ V ++ G ++ S+ F + ++A LLEP + + P Sbjct: 489 -LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAP 547 Query: 596 EDYLGGIIGDLQSRRGRIVATEPIPRGQEVIAEVPLARLFNYVSALRSLSQGRAVHAMAF 655 ++YL D IV T+ + E+P + Y S L + GR+V Sbjct: 548 QEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGRSVCLTEL 607 Query: 656 SRYAPA 661 Y Sbjct: 608 KGYHVT 613
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 40.3 bits (94), Expect = 8e-07 Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 91 PPWRGRGIGRALIRRTMDAALAGGLTRITLTVRETNLNAIALYESVGFEKEGLHR 145 +R +G+G AL+ + ++ A + L ++ N++A Y F + Sbjct: 99 KDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDT 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.013 Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 6/141 (4%) Query: 69 FVGFGNFTFLFKRETFWMVVKQSCIFAITAVIFKALMGFIVAHFVHNIPAKGQRKWRGIL 128 +G+G +T + I LMG ++ H + + + Sbjct: 17 GIGWGVYTLTGFGFASLYGSPKLHSMIFNIAIS--LMGLVLTHAYRSFIKRQGWLKLNMG 74 Query: 129 LVPWVIPPAMSTLAWLWLFDPSYSAFNYTLSFFGIGPIPWLGETA--WARFSVILVNVWY 186 + + PA + +W ++ L+F P+ + A V++ +W Sbjct: 75 QIILRVLPACVVIGMVWFVAN--TSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWS 132 Query: 187 GAPFFMIMYLAALKSVPDQLY 207 F + ++ DQ Sbjct: 133 LLYFGWHFFKNYKQAEIDQWK 153
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 28.0 bits (62), Expect = 0.002 Identities = 11/33 (33%), Positives = 21/33 (63%) Query: 10 NQRLSKMVAETLLMEILASGHPEVSLSSVGTGE 42 NQ LS+ A++++ +++ G P +S+ G GE Sbjct: 270 NQGLSERRAQSVVDYLISKGIPADKISARGMGE 302
>FLAGELLIN#Flagellin signature. Length = 507 Score = 39.3 bits (91), Expect = 8e-05 Identities = 34/298 (11%), Positives = 61/298 (20%), Gaps = 4/298 (1%) Query: 216 AANATSFTVNS--SASITATSPVGTAGAVDVTVTNSGKTSATSAADQFTYTPAPTVTAIS 273 +N T F S VG +T+ + D F T Sbjct: 125 VSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGD 184 Query: 274 PATGTAAGGTSVTITGTNLAAASAVRFGSTSAASYTVNSATQITATSPAGSGTVDVTVTT 333 + T V G+ + ++ A Sbjct: 185 LKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN-AANGQLTTDDAEN 243 Query: 334 AGGTSATSAADQFTYIPLVTAISPASGPTTGSTAVTITGNGFTGASAVKFGAANATSFTV 393 AI+ A G FT + S T+ Sbjct: 244 NTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTI 303 Query: 394 NSATQITATSPSGAAGTIDVTVTTSGQTSPTSAADQFTYAAAPTVTSISPSSGPASGSTS 453 N + A T + ++ + + S + + + Sbjct: 304 NGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNES-AKLSDLEANN 362 Query: 454 VIITGTGFTAATAVSFGATAATSYTVNSATQITAFAPAGTGTVDVRVTGVGGTSATSA 511 + + T A A T+ T +G T+ S + Sbjct: 363 AVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANP 420
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.8 bits (90), Expect = 1e-06 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 32 DGSPVGRLLLDRTAAQSHVV-DLALLPGTRNAGVGREIMEAVATAGREPGAEMLSLPLAA 90 + + +GR+ + ++ D+A+ R GVG ++ +E L L Sbjct: 73 ENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQD 132 Query: 91 SNEDAMRFYARLGF 104 N A FYA+ F Sbjct: 133 INISACHFYAKHHF 146
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.4 bits (66), Expect = 0.021 Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 11/121 (9%) Query: 27 ILVEATSGSVLFEKNADELRAPSSMMKLMTAEVVFNAVKEGTVKLNDEYRISENAWRKGG 86 I ++ SG L ADE S K++ V V G +L + + Sbjct: 43 IEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQD----- 97 Query: 87 APSGTSTMFAALNSKVPVSDLLHGAIIQSGNDACIALAEGMAGNEKIFAADYMTKRAREL 146 + L + V +L AI S N A L + G + T R++ Sbjct: 98 LVDYSPVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGL------TAFLRQI 151 Query: 147 G 147 G Sbjct: 152 G 152
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.5 bits (102), Expect = 3e-06 Identities = 36/195 (18%), Positives = 54/195 (27%), Gaps = 7/195 (3%) Query: 5 SKTTVKKGKPATKGAATKAAAKKASKSPAKAKAGATKAKAAADKDKKAKAAKANAAKAKA 64 SKT K + AT+ A K +KS KA T+ A + K + K A Sbjct: 1048 SKTVEKNEQDATETTAQNREVAKEAKSNVKA---NTQTNEVAQSGSETKETQTTETKETA 1104 Query: 65 TKGKASSAPA-KGKSPKAAKKAAKSATKPAVPAKKTAAKAAATKPAP--SKKPAETKPAP 121 T K A K+ + K ++ + K A + P + K +++ Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNT 1164 Query: 122 APKLVAPAVAESPKPPPRAAKPKTPRKRKVEAAAAPEIEIAEIEVAEV-EIVEIEATDTA 180 PA S + T A + E Sbjct: 1165 TADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHR 1224 Query: 181 EDATPVAAATENANT 195 V E A T Sbjct: 1225 RSVRSVPHNVEPATT 1239 Score = 38.9 bits (90), Expect = 8e-05 Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 3/120 (2%) Query: 77 KSPKAAKKAAKSATKPAVPAKKTAAKAAATKPAPSKKPA-ETKPAPAPKLVAPAVAESPK 135 + A P+VP+ P P PA ++ + +++ + Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 136 PPPRAAKPKTPRKRKVEAAAAPEIEIA--EIEVAEVEIVEIEATDTAEDATPVAAATENA 193 + A T + R+V A ++ EVA+ E T T E A Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Score = 38.5 bits (89), Expect = 1e-04 Identities = 31/199 (15%), Positives = 60/199 (30%), Gaps = 22/199 (11%) Query: 2 AKASKTTVKKGKPATKGAATKAAA---KKASKSPAKAKAGATKAKAAA------------ 46 A+ + V PAT T+ A K+ SK+ K + AT+ A Sbjct: 1018 ARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVK 1077 Query: 47 DKDKKAKAAKANAAKAKATKGKASSAPAKGKSPKAAKKAAKSATKPAVPAKKTAAKAAAT 106 + + A++ + + + K KA + K+ P V ++ + + + Sbjct: 1078 ANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSE 1137 Query: 107 KPAPSKKPAETKPAPAPKLVAPAVAESPKPPPRAAKPKTPRKRKVEAAAAPEIEIAEIEV 166 P +PA + P + P + +T + + Sbjct: 1138 TVQPQAEPA-RENDPTVNIKEPQSQTNTTADTEQPAKETSS------NVEQPVTESTTVN 1190 Query: 167 AEVEIVEIEATDTAEDATP 185 +VE T P Sbjct: 1191 TGNSVVENPENTTPATTQP 1209
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 423 bits (1088), Expect = e-147 Identities = 167/481 (34%), Positives = 262/481 (54%), Gaps = 35/481 (7%) Query: 2 ASDILIVDDEADIRELVAGILDDEGFTTRTARDSDSALAEIAGRRPNLVFLDIWLQGSKL 61 + IL+ DD+A IR ++ L G+ R ++ + IA +LV D+ + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD--E 60 Query: 62 DGLQLLEQIKKDHPDLPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRALE 121 + LL +IKK PDLPV+++S TA+ A ++GAYD++ KPF LI + RAL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL- 119 Query: 122 NSRLKREVRELKQLAPTASTMTGRSPSMNQLRQTIERAAKANSRILIVGPPGSGKELAAR 181 + KR +L+ + + GRS +M ++ + + R + + ++I G G+GKEL AR Sbjct: 120 -AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 182 TLHAQSPRAEGPFVVINAAAITPERMEEELFGIEQS--NGEQSRKTGALEEAHGGTLFVD 239 LH R GPFV IN AAI + +E ELFG E+ G Q+R TG E+A GGTLF+D Sbjct: 179 ALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLD 238 Query: 240 EIADMPRETQNKILRVLVDQTFQRAGGTTKVHVDVRIISSTARNLEEEIASGRFREDLYH 299 EI DMP + Q ++LRVL + GG T + DVRI+++T ++L++ I G FREDLY+ Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYY 298 Query: 300 RLSVVPIRVPPLSERREDIPELIDYFMDQISVTTGLPKRQIGQDAMAVLQSHVWPGNVRQ 359 RL+VVP+R+PPL +R EDIP+L+ +F+ Q GL ++ Q+A+ ++++H WPGNVR+ Sbjct: 299 RLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRE 357 Query: 360 LRNNVERVMILAAGGPEVIITADMLPPDVGSMVPAMPTSNNGEHIMGLPLR--------- 410 L N V R+ L +IT +++ ++ S +P P L + Sbjct: 358 LENLVRRLTALYPQD---VITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQ 414 Query: 411 ----------------EAREVFERDYLIAQISRFSGNISRTAEFVGMERSALHRKLKALG 454 E ++A ++ GN + A+ +G+ R+ L +K++ LG Sbjct: 415 YFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELG 474 Query: 455 V 455 V Sbjct: 475 V 475
>PF06580#Sensor histidine kinase Length = 349 Score = 46.0 bits (109), Expect = 3e-07 Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 25/157 (15%) Query: 555 IVRQVDDIRRMVDEFSRFARMPKPVMEGEDVA-----DAVRQAVFLMKVAHPE-IDIETD 608 I+ R M+ S R V+ V + L + + + E Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQ 245 Query: 609 IKQDPLRAQFDRRLISQALTNIIKNATEAIEVVPQEELGKGRIDVVAAREGDDVLIDVID 668 I + Q L+ + N IK+ + G+I + ++ V ++V + Sbjct: 246 INPAIMDVQVPPMLVQTLVENGIKHGIAQLP-------QGGKILLKGTKDNGTVTLEVEN 298 Query: 669 NGIGLPKVARQRLLEPYVTTRAKGTGLGLAIVGRVLE 705 G K ++ TG GL V L+ Sbjct: 299 TGSLALKNTKE------------STGTGLQNVRERLQ 323
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.7 bits (72), Expect = 0.005 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 18/101 (17%) Query: 34 AALVDNPRYASPQELAEITAREQPDGIIVRQGKIDDQVIGASQKLKAIAKHGVGYDNIDV 93 A+++ R+ +P+E ++T R DG +VR LK +A+ +G +N +V Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVR--------------LKDVARVELGGENYNV 277 Query: 94 EA----ADRRGIPVFVARGANSQSVAELAFALMFAVAREIP 130 A G+ + +A GAN+ A+ A + + P Sbjct: 278 IARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFP 318
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 30.2 bits (68), Expect = 0.019 Identities = 34/193 (17%), Positives = 78/193 (40%), Gaps = 14/193 (7%) Query: 22 RIMPFMMICYLFAILDRGNVGMASLQMVHDLGMSKAVFGFGASLFFFSYFLMEVPSNLAL 81 +I+ ++ I F++L+ + ++ + +D A + + F ++ + Sbjct: 14 QILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 82 QRFGARRWIARIMITWGIISAGMAFVQGQNSFYVM---RFLLGAAEAGFFPGVLLYLTYW 138 + G +R + I + + FV G + F ++ RF+ GA A F V++ + + Sbjct: 74 DQLGIKRLLL-FGIIINCFGSVIGFV-GHSFFSLLIMARFIQGAGAAAFPALVMVVVARY 131 Query: 139 LPANYRGRLIALFGISIPAASFIGSPLGGLLLDLDGLLGLRGWQWLFIVEGVPTVLLGLV 198 +P RG+ L G + +G +GG++ W +L + +P + + V Sbjct: 132 IPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAH------YIHWSYLLL---IPMITIITV 182 Query: 199 CLAILTDRPEEAR 211 + + E Sbjct: 183 PFLMKLLKKEVRI 195
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 61.9 bits (150), Expect = 2e-12 Identities = 54/203 (26%), Positives = 73/203 (35%), Gaps = 39/203 (19%) Query: 325 EFTVRTENYPLSRRLFLYTADQPRPEVGRFIKFALSKEGQEVAQRTVVGLSPTPRPAAEV 384 E R E Y + + RP+ G + GQ A V +P P PA EV Sbjct: 155 EIATRLE-YQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVV---APAPAPAPEV 210 Query: 385 DTRPCTLSAKWTGNPQEFCRLRTQARALDVSFRFQTNSVELDNLAAPNLFRVMQALRET- 443 T+ TL + DV F F N L L ++ L Sbjct: 211 QTKHFTLKS-------------------DVLFNF--NKATLKPEGQAALDQLYSQLSNLD 249 Query: 444 -PQARLLLAGFADRRGNYQANCRLSLQRAESVKQSLASLGV--SNVDTRGY--------- 491 +++ G+ DR G+ N LS +RA+SV L S G+ + RG Sbjct: 250 PKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGN 309 Query: 492 -CDEVPVRDNGGDEFEKNRRVEI 513 CD V R D +RRVEI Sbjct: 310 TCDNVKQRAALIDCLAPDRRVEI 332
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 726 bits (1875), Expect = 0.0 Identities = 278/1036 (26%), Positives = 492/1036 (47%), Gaps = 24/1036 (2%) Query: 4 ISEPFIRRPVGTTLLSIGLFLVGFVAYIFLPVAPVPNVDFPSIFVSASRPGADPSVMAAT 63 ++ FIRRP+ +L+I L + G +A + LPVA P + P++ VSA+ PGAD + T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 64 VAAPLERRLGEIAGVDQITSTS-SLGQTNIQIQFAIGRDIDKAARDVQAAINAALSDLPS 122 V +E+ + I + ++STS S G I + F G D D A VQ + A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 123 DLPALPRFRKANTAAAPVFVLALTS--KTMTPSAMYDVADTVLAQRLFQVPGVGNVTVSG 180 ++ ++++ + V S T + D + + L ++ GVG+V + G Sbjct: 121 EVQQ-QGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 181 ADQPAVRIALNPVSLANAGIATDDVRTAIINANPIGPVGIFEGGRQSE------TIAVNR 234 A Q A+RI L+ L + DV + N G G +I Sbjct: 180 A-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 235 QMRTAAEFRDILIKSS-NGSFVRLADVADVEDSVRNVRSIAWFNKQPAVLIQIAKQGDAN 293 + + EF + ++ + +GS VRL DVA VE N IA N +PA + I AN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 294 VIETVDRVKALIPELKQWIPAGIEISTLIDRTGTIRASVEDMQWTLLATAVLVMVVVFVF 353 ++T +KA + EL+ + P G+++ D T ++ S+ ++ TL +LV +V+++F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 354 LRRLVPTVAAGVSVPLALAGTCAAMWLAGFSIDNLSLMALAISVGFVVDDAIVMIENMYR 413 L+ + T+ ++VP+ L GT A + G+SI+ L++ + +++G +VDDAIV++EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 414 -NLEHGLSPMRAALDGARQIGFTVLSISLSLVAAFVPLIFMDGVVGRLLREFSLTLTFAI 472 +E L P A QI ++ I++ L A F+P+ F G G + R+FS+T+ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 473 VVSTLVSLTVTPMICAHYIKETLSDRATL---FDRIVEGTLSGMVRFYTWTLRGVLLYPF 529 +S LV+L +TP +CA +K ++ F T V YT ++ +L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 530 LTLLVFFATIALTVTLYIKVPKGYFPTDDSGFIIGATRASADISFQSMLALQQRLADIVM 589 LL++ +A V L++++P + P +D G + + A + + + ++ D + Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 590 ADPAVAGLGSTIG-GGGGPGGATSNRGTMFINLKPPAEREGV--STELVINRLRRSLAMV 646 + A + S G G N G F++LKP ER G S E VI+R + L + Sbjct: 599 KNEK-ANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKI 657 Query: 647 PGIRLFMFAAQDVRAGGRQSDSDYQYT-LSSPDLDLLQKWAPIVAKRLETV-EGITDISS 704 + F + G + D++ + D L + + + + Sbjct: 658 RDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 705 DRDPGGLQLALKIDRQKAASLGVRVQDIDNALNNAFAQRQISIVYSQRNQYMVVLEIDPK 764 + Q L++D++KA +LGV + DI+ ++ A ++ + + ++ D K Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 765 FQTDPSNLARIYVAGAGDAQIPLSALVKAERGLSPLAVFHSQAFPSTTVSFNLLPDVPLQ 824 F+ P ++ ++YV A +P SA + + PS + P Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSG 837 Query: 825 AATANIQRAVDELHMPEGIRGGFDGNAGDFNKGNGRQPLLILSALVAMYIVLGVLYESLA 884 A A ++ +L P GI + G + + P L+ + V +++ L LYES + Sbjct: 838 DAMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895 Query: 885 HPLTIISTLPSAGLGALLALQVTGTPLTVIAFVGIILLIGIVKKNGIMLVDFALEAERQR 944 P++++ +P +G LLA + V VG++ IG+ KN I++V+FA + + Sbjct: 896 IPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE 955 Query: 945 GMSSADAIFEACRVRFRPILMTTLAALFAGLPLVIATGPGTELRRPLGITIIGGLLVSQI 1004 G +A A R+R RPILMT+LA + LPL I+ G G+ + +GI ++GG++ + + Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATL 1015 Query: 1005 LTLYTTPVIYLLIDRL 1020 L ++ PV +++I R Sbjct: 1016 LAIFFVPVFFVVIRRC 1031
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 760 bits (1965), Expect = 0.0 Identities = 278/1033 (26%), Positives = 501/1033 (48%), Gaps = 30/1033 (2%) Query: 7 FIRRPIATSLLGVALLIGGLLGYLALPVSALPQVDFPTVQVTTQLPGASPDVIASLITAP 66 FIRRPI +L + L++ G L L LPV+ P + P V V+ PGA + +T Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 67 LERQLGQIPSLSVMNSTS-SFGVSQISLQFDLGRDIDGATQDVQAAINAAAGVLPKSLPY 125 +E+ + I +L M+STS S G I+L F G D D A VQ + A +LP+ + Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ- 123 Query: 126 PPTYAKVNPADAPVMTLALTSET--ISLRAMSDMADTILAQRLSQVSGVGRVSVLGGLKP 183 + + + +M S+ + +SD + + LS+++GVG V + G + Sbjct: 124 QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-QY 182 Query: 184 AVRVQADLARLAAYGISMEDLRAAIAGANVSGPKGSLDGAQQA------YLITANDQIAA 237 A+R+ D L Y ++ D+ + N G L G I A + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 238 ADAYKPIII-AYRNGSPVTIGDVATIVDGLENDRTGGWYQGVPSVILDIQRQPGANVIEV 296 + + + + +GS V + DVA + G EN G P+ L I+ GAN ++ Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 297 VRQIRAEIPKLQRTIPAGVKLAIVSDRTVTIRASVHHVQFTLVLSVVLVTLVVLLFLRSM 356 + I+A++ +LQ P G+K+ D T ++ S+H V TL +++LV LV+ LFL++M Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 357 RATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENIVRHM-E 415 RAT+I +A+P+ L+ +F ++ G+S++ L++ + + G +VDDAIV++EN+ R M E Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 416 DGESAMNASLRGAREIGFTVISLTVSLIAVFIPLLFMSGLVGRMFREFALTLTIAVVTSA 475 D A+ + +I ++ + + L AVFIP+ F G G ++R+F++T+ A+ S Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 476 VVSLTLTPMMCSRLLKHASDEWVLPG---LNAISRFIDRTVAVYHRSLLWVLERQTETLV 532 +V+L LTP +C+ LLK S E + D +V Y S+ +L L+ Sbjct: 483 LVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLL 542 Query: 533 VTFATLAATLALYILAPKGFLPMQDTGSITAVTEAGPDVSFTEMSRRQAEISAAIQAD-- 590 + +A + L++ P FLP +D G + + + + +++ + Sbjct: 543 IYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEK 602 Query: 591 PDVIGVVSVIGAGSVNPTTNVGRLVMTLKPLGER---KDGVATVIDRLKQKVSGVPGMTV 647 +V V +V G N G ++LKP ER ++ VI R K ++ + V Sbjct: 603 ANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFV 662 Query: 648 YFQPVQDVQISTQASRSQYQYTLT---GADAGEVSKWAGRLVAEMRRDPL-FRDVSSEAQ 703 P I + + + + L G +++ +L+ + P V Sbjct: 663 I--PFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 704 EGGLRAELTIDRQRAGQLGVSLQAVTDTLNDAFAQRQISTIYGQANQYRVVLEALPMYQR 763 E + +L +D+++A LGVSL + T++ A ++ + ++ ++A ++ Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 764 DPSILSKLYLPGAGGQ-VPLSAVATLKRTTTPLAISHQAQFPAVSLSFNLAPGAALSEAV 822 P + KLY+ A G+ VP SA T + P++ + APG + +A+ Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 823 DALHATEARIGMPGSIIGVYSGDAAEFAKSLAGQPWLLLAAVITIYIVLGVLYESYIHPI 882 + ++ +P I ++G + + S P L+ + + +++ L LYES+ P+ Sbjct: 841 ALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 883 TILSTLPSAGVGAILALLLFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALEAERHESRT 942 +++ +P VG +LA LF Q V ++G++ +G+ KNAI++++FA + E + Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 943 PTDAIVQACLLRFRPIMMTTLAALFGALPLAIESGTGSELRFPLGISIIGGLLLSQLLTL 1002 +A + A +R RPI+MT+LA + G LPLAI +G GS + +GI ++GG++ + LL + Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1003 YTTPVIYLALDRI 1015 + PV ++ + R Sbjct: 1019 FFVPVFFVVIRRC 1031 Score = 87.2 bits (216), Expect = 2e-19 Identities = 83/501 (16%), Positives = 179/501 (35%), Gaps = 29/501 (5%) Query: 6 PFIRRPIATSLLGVALLIGGLLGYLALPVSALPQVDFPTVQVTTQLP-GASPDVIASLIT 64 + L+ ++ G ++ +L LP S LP+ D QLP GA+ + ++ Sbjct: 532 KILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLD 591 Query: 65 APLERQL----------GQIPSLSVMNSTSSFGVSQISLQFDLGRDIDGATQD-VQAAIN 113 + L + S + G++ +SL+ R+ D + + V Sbjct: 592 QVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAK 651 Query: 114 AAAGVLPKSLPYP---PTYAKVNPADAPVMTLALTSETISLRAMSDMADTILAQRLSQVS 170 G + P P ++ A L + + A++ + +L + Sbjct: 652 MELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAG-LGHDALTQARNQLLGMAAQHPA 710 Query: 171 GVGRVSVLG-GLKPAVRVQADLARLAAYGISMEDLRAAIAGANVSGPKGS---LDGAQQA 226 + V G +++ D + A G+S+ D+ I + G + G + Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTI-STALGGTYVNDFIDRGRVKK 769 Query: 227 YLITANDQIA-AADAYKPIIIAYRNGSPVTIGDVATIVDGLENDRTGGWYQGVPSVILDI 285 + A+ + + + + NG V T + R Y G+PS+ + Sbjct: 770 LYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLER-YNGLPSMEIQG 828 Query: 286 QRQPGANVIEVVRQIRAEIPKLQRTIPAGVKLAIVSDRTVTIRASVHHVQFTLVLSVVLV 345 + PG A + L +PAG+ + + R S + + +S V+V Sbjct: 829 EAAPGT----SSGDAMALMENLASKLPAGIGYD-WTGMSYQERLSGNQAPALVAISFVVV 883 Query: 346 TLVVLLFLRSMRATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMALTIGTGFVVDDAIV 405 L + S + + +PL ++ D ++ L G +AI+ Sbjct: 884 FLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAIL 943 Query: 406 MIENIVRHME-DGESAMNASLRGAREIGFTVISLTVSLIAVFIPLLFMSGLVGRMFREFA 464 ++E ME +G+ + A+L R ++ +++ I +PL +G Sbjct: 944 IVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVG 1003 Query: 465 LTLTIAVVTSAVVSLTLTPMM 485 + + +V++ ++++ P+ Sbjct: 1004 IGVMGGMVSATLLAIFFVPVF 1024
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.8 bits (93), Expect = 2e-05 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 21/130 (16%) Query: 88 NTVTVRSQVDGKLIAVNFVEGQDVKKGDVLAEIDP-------AIYQAQYDQAVAKKAQDE 140 + ++ + + + EG+ V+KGDVL ++ Q+ QA ++ + + Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 141 AQLANQKLD--------------LARYEQLAASSAGSKQQADTQRAVVAQQQALIKADQA 186 + +L+ E++ ++ K+Q T + Q++ + +A Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRA 214 Query: 187 AIDNAAATLS 196 A ++ Sbjct: 215 ERLTVLARIN 224 Score = 31.7 bits (72), Expect = 0.007 Identities = 19/129 (14%), Positives = 50/129 (38%), Gaps = 11/129 (8%) Query: 125 YQAQYDQAVAKKAQDEAQLANQKLDLARYEQLAASSAGSKQQADTQRAVVAQQQALIKAD 184 + ++ Q E+++ + K + QL + + T + L K + Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI-LDKLRQTTDNIGLLTLELAKNE 322 Query: 185 QAAIDNAAATLSYTKIVAPIAGR-AGLRQVDQGNIIHSADTTGLVVITQLQPIAVQFSLP 243 + + I AP++ + L+ +G ++ +A+T +V++ + + V + Sbjct: 323 ER--------QQASVIRAPVSVKVQQLKVHTEGGVVTTAETL-MVIVPEDDTLEVTALVQ 373 Query: 244 QQQIMRVNA 252 + I +N Sbjct: 374 NKDIGFINV 382 Score = 29.0 bits (65), Expect = 0.046 Identities = 10/72 (13%), Positives = 27/72 (37%) Query: 118 AEIDPAIYQAQYDQAVAKKAQDEAQLANQKLDLARYEQLAASSAGSKQQADTQRAVVAQQ 177 E++ +A+ +A+ + E +K L + L A +K Q + Sbjct: 205 KELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEA 264 Query: 178 QALIKADQAAID 189 ++ ++ ++ Sbjct: 265 VNELRVYKSQLE 276
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.1 bits (169), Expect = 1e-14 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 12/140 (8%) Query: 22 ILLVDDQPAKLLAYEVILKELGENLVVATSGREALEILLKNEIAVILVDVCMPELDGFEL 81 IL+ DD A L G ++ + ++ + + +++ DV MP+ + F+L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 82 AQMIREHPRFQKIAIIFISAVQVSDFDRLRGYEMGAVDYVPVPVVPEVLRAKIKVFAELY 141 I++ + ++ +SA ++ E GA DY+P P L I Sbjct: 66 LPRIKK--ARPDLPVLVMSAQNTFM-TAIKASEKGAYDYLPKPFDLTELIGIIG------ 116 Query: 142 RKTRELEHLNLELENRVRAR 161 R L Sbjct: 117 ---RALAEPKRRPSKLEDDS 133
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 35.3 bits (81), Expect = 5e-04 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%) Query: 210 PAPLPPPPPKLDPVELLTMLVEQSEKLEEAEAPPKKPAPAAARQAVREPMPAPRRMEEPM 269 PA L PP P E V + E E P K AP + +P P P+ +++ Sbjct: 52 PADLEPPQAVQPPPE----PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQ 107 Query: 270 RGRPEPRMPAGRMRPPAPAKGNS 292 P+ + RP +P + + Sbjct: 108 EQ-PKRDVKPVESRPASPFENTA 129 Score = 30.0 bits (67), Expect = 0.023 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 6/86 (6%) Query: 209 RPAPLPPPPPKLDPVELLTMLVEQSEKLEEAEAPPKKPAPAAARQAVREPMPAPRRMEEP 268 P P+ P P+ +P+ +++ + E P KP P ++ +P + +E Sbjct: 64 PPEPVVEPEPEPEPIPEPP---KEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Query: 269 MRGRPEPRMPAGRMRPP---APAKGN 291 E PA A +K Sbjct: 121 PASPFENTAPARLTSSTATAATSKPV 146 Score = 29.2 bits (65), Expect = 0.047 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 11/91 (12%) Query: 210 PAPLPPPPPKLDPVELLTMLVEQSEKLE--EAEAPPKKP----APAAARQAVREPMPAPR 263 P + P PK P V++ K + E+ P P APA + + Sbjct: 86 PVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATS-- 143 Query: 264 RMEEPMRGRPEPRMPAGRMRPPAPAKGNSRR 294 +P+ R +P PA+ + R Sbjct: 144 ---KPVTSVASGPRALSRNQPQYPARAQALR 171
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 339 bits (872), Expect = e-112 Identities = 101/423 (23%), Positives = 178/423 (42%), Gaps = 6/423 (1%) Query: 226 LRLGLRVLLVAAVFGGGWLTLVPLAGAVVVPGNLVVQSNVKAIQHPTGGIIAEIKVDNGK 285 RL ++ V L + G L K I+ I+ EI V G+ Sbjct: 57 PRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGE 116 Query: 286 RVAAGDLLVRLDATQSQAQLQSITKQLNEQRAKIARLSAERDGLEQPEYPATLTSHTDDP 345 V GD+L++L A ++A L + R + R +E + P D+P Sbjct: 117 SVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPEL--KLPDEP 174 Query: 346 NIRAVIASEN----ALFKARAVTRKSQKELLQGRIVQLNNEISGMEAQLDSKTKQIDLIK 401 + V E +L K + T ++QK + + + E + A+++ + K Sbjct: 175 YFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEK 234 Query: 402 GELAGVQDLYDKRLVPLTRLTTLQREAARIDGERGQLVSSVAETRSKISEAELQTVKIDQ 461 L L K+ + + + + E S + + S+I A+ + + Q Sbjct: 235 SRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQ 294 Query: 462 DFRSEVVKDLSESQAKEGDLVEKGVAARDQLDRIEMRAPNSGTIHQLAVHTIGGVIKPGE 521 F++E++ L ++ G L + ++ +RAP S + QL VHT GGV+ E Sbjct: 295 LFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE 354 Query: 522 TIMELVPDSDELQVEGHVQPKDIDHVHTGQDAMVHFNAFNSHTTPKLSGQVSFVSPDITN 581 T+M +VP+ D L+V VQ KDI ++ GQ+A++ AF L G+V ++ D Sbjct: 355 TLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIE 414 Query: 582 DQRTGSTFYTVRITLPDEERKRLGDVNLKPGMQAEVYVQTGSRTMLSYLMKPVLDQWRRA 641 DQR G F + + ++ L GM ++TG R+++SYL+ P+ + + Sbjct: 415 DQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTES 474 Query: 642 FVE 644 E Sbjct: 475 LRE 477
>cloacin#Cloacin signature. Length = 551 Score = 42.0 bits (98), Expect = 6e-06 Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 10/85 (11%) Query: 481 GTGAPAGANPNIANGTGGTPASTTTPGGGGMAGGGAAGGGAAGGGAAGGGAAGGGTTGGG 540 G G GA+ N GG P G G+ GG + G G + GG +G G GG Sbjct: 6 GRGHNTGAHSTSGNINGG-------PTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 541 TTGGGAAGGGTTGGNTGTGNNTGNN 565 +G G GG GN+G G+ TG N Sbjct: 59 GSGHGNGGG---NGNSGGGSGTGGN 80 Score = 41.6 bits (97), Expect = 8e-06 Identities = 23/65 (35%), Positives = 27/65 (41%) Query: 483 GAPAGANPNIANGTGGTPASTTTPGGGGMAGGGAAGGGAAGGGAAGGGAAGGGTTGGGTT 542 G P G G +S P GGG G GGG+ G G G +GGG+ GG Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Query: 543 GGGAA 547 AA Sbjct: 82 SAVAA 86 Score = 40.1 bits (93), Expect = 2e-05 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 508 GGGMAGGGAAGGGAAGGGAAGGGAAGGGTT------GGGTTGGGAAGGGTTGGNTGTGNN 561 G + G GG G G GG + G G + GGG+ G GGG+ GN G N Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 562 TGNNQTT 568 +G T Sbjct: 71 SGGGSGT 77
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 39.1 bits (91), Expect = 3e-05 Identities = 13/91 (14%), Positives = 28/91 (30%) Query: 915 PQHLDAHFALGNLLYTAGKDIEAAKHYLKVLDFSPEHAETHNNIANVLLRQGHRERAIEH 974 L+ ++L Y +GK +A K + + + + G + AI Sbjct: 33 SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 92 Query: 975 YKRAIASRPDYADAYGNLGNAFLELNQLEQS 1005 Y + L+ +L ++ Sbjct: 93 YSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123 Score = 36.1 bits (83), Expect = 4e-04 Identities = 17/112 (15%), Positives = 30/112 (26%) Query: 230 QQAIGQADAAIRTYQQALAVSPHLAEAHYNLGNLHLEMNSWPAAIFHYERAIAERPDFPE 289 Q A+ T +S E Y+L + + A ++ Sbjct: 12 QLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSR 71 Query: 290 AHNNLANALQSRGRSDEALAHYAEALRRRPDYATAHRNRGDTLRDVKRFEEA 341 L Q+ G+ D A+ Y+ + + L EA Sbjct: 72 FFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123 Score = 35.7 bits (82), Expect = 5e-04 Identities = 16/95 (16%), Positives = 27/95 (28%) Query: 877 LSLSPSHPGILYGFAMVRQNQGLIEESTALLRRAIDNKPQHLDAHFALGNLLYTAGKDIE 936 +S LY A + G E++ + + LG G+ Sbjct: 29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88 Query: 937 AAKHYLKVLDFSPEHAETHNNIANVLLRQGHRERA 971 A Y + + A LL++G A Sbjct: 89 AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123 Score = 35.3 bits (81), Expect = 6e-04 Identities = 15/69 (21%), Positives = 28/69 (40%) Query: 200 GRHAEAIAHYQRALAIQPNAPVVLLNIGGCQQAIGQADAAIRTYQQALAVSPHLAEAHYN 259 G++ +A +Q + L +G C+QA+GQ D AI +Y + ++ Sbjct: 50 GKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFH 109 Query: 260 LGNLHLEMN 268 L+ Sbjct: 110 AAECLLQKG 118 Score = 33.7 bits (77), Expect = 0.002 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 4/126 (3%) Query: 149 PNDADAHQALGFALQRLGQFERALSHHEAALAARPNFAAAAGSLGDACRMLGRHAEAIAH 208 + + +L F + G++E A +A + LG + +G++ AI Sbjct: 33 SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 92 Query: 209 YQRALAIQPNAPVVLLNIGGCQQAIGQADAAIRTYQQALAVSPHLAEAHYNLGNLHLEMN 268 Y + P + C G+ A + L ++ L L ++ Sbjct: 93 YSYGAIMDIKEPRFPFHAAECLLQKGELAEA----ESGLFLAQELIADKTEFKELSTRVS 148 Query: 269 SWPAAI 274 S AI Sbjct: 149 SMLEAI 154 Score = 33.0 bits (75), Expect = 0.004 Identities = 9/63 (14%), Positives = 21/63 (33%) Query: 327 NRGDTLRDVKRFEEAIASYRTALSHDPRDVTTMNHLAGVLMILGRLDEAAQAYQMALAVN 386 + ++E+A ++ D D L +G+ D A +Y ++ Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 387 PRN 389 + Sbjct: 101 IKE 103 Score = 32.2 bits (73), Expect = 0.006 Identities = 18/98 (18%), Positives = 31/98 (31%) Query: 210 QRALAIQPNAPVVLLNIGGCQQAIGQADAAIRTYQQALAVSPHLAEAHYNLGNLHLEMNS 269 I + L ++ Q G+ + A + +Q + + + LG M Sbjct: 26 AMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQ 85 Query: 270 WPAAIFHYERAIAERPDFPEAHNNLANALQSRGRSDEA 307 + AI Y P + A L +G EA Sbjct: 86 YDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123 Score = 31.8 bits (72), Expect = 0.011 Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 18/129 (13%) Query: 983 PDYADAYGNLGNAFLELNQLEQSIEQNLLAIKIKPERFGSYNNLGVAYQALGRFEEATAA 1042 D + +L + + E + + + + LG QA+G+++ A + Sbjct: 33 SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 92 Query: 1043 FQKALELAPDD--APIHLNLANMSKFKPDDSR------------LPALKALIERV----D 1084 + + + P H + K + ++ K L RV + Sbjct: 93 YSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLE 152 Query: 1085 QLDQEKQIA 1093 + +K++ Sbjct: 153 AIKLKKEME 161 Score = 31.1 bits (70), Expect = 0.016 Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 3/116 (2%) Query: 805 LKLILAGQPTNFDALVGLGMIRTTANRLDEAKDYFQRAVAVNDKSAEAHGSIGAVEASAG 864 + ++ + L L + + + ++A FQ ++ + +GA + G Sbjct: 25 IAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMG 84 Query: 865 RYEAAVQHYETALSLSPSHPGILYGFAMVRQNQGLIEESTALLRRAID---NKPQH 917 +Y+ A+ Y + P + A +G + E+ + L A + +K + Sbjct: 85 QYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 36.8 bits (85), Expect = 4e-05 Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 40/224 (17%) Query: 1 MKKILLA-TVALAALAAPAAAADLAARPTYTKAPVLAPVPTWAGFYLGAFGGYATTDNGG 59 MKK +A VALA A A AA P +Y GA G++ + G Sbjct: 1 MKKTAIAIAVALAGFATVAQAA-----------------PKDNTWYTGAKLGWSQYHDTG 43 Query: 60 VLSPKGGFAGGTIGYNWQSGAWV---YGLEADAAWADIKDSVGGVVPG-FGAVGIASKID 115 ++ G +G G V G E W G V G + A G+ Sbjct: 44 FINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGV----- 98 Query: 116 ATGTARGRVGYAFNNVL-LYG-TGGYAWANNKITLSALGVGVSDTQFLSGWTAGGGVEVL 173 ++GY + L +Y GG W + + G + +S GGVE Sbjct: 99 ---QLTAKLGYPITDDLDIYTRLGGMVWRADT---KSNVYGKNHDTGVSP-VFAGGVEYA 151 Query: 174 FAPKWSVKAEYLYKSFDGKTYFGGALPTGNLNLHSVQVGVNYHF 217 P+ + + EY + + G + G P + + +GV+Y F Sbjct: 152 ITPEIATRLEYQWTNNIGDAHTIGTRP----DNGMLSLGVSYRF 191
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 28.9 bits (64), Expect = 0.007 Identities = 9/20 (45%), Positives = 15/20 (75%) Query: 63 HVDHSRDTVYVTYVEYLTHV 82 H D+S+D +Y T+ YL+H+ Sbjct: 366 HTDNSKDLMYATFTGYLSHL 385
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 56.4 bits (136), Expect = 7e-11 Identities = 73/337 (21%), Positives = 112/337 (33%), Gaps = 14/337 (4%) Query: 41 PVLPHVAEDFAISIATAAG---IAAGYALIYALIQPAIGAAADLFGKARLMTLCLALLGV 97 PVLP + D S A + A YAL+ P +GA +D FG+ ++ + LA V Sbjct: 26 PVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAV 85 Query: 98 ASVLGALATSFPLLFATRILAGIASGGVFPVALGLTADLVAPDKRQVAIGRTLAGSMAGN 157 + A A +L+ RI+AGI +G VA AD+ D+R G A G Sbjct: 86 DYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGM 144 Query: 158 LLGATASGIIGDFIGWRGVLAILGALGLIASFAVAAGFRGAKVTHAATTDLATLKKGYGI 217 + G G++G AL + + L Sbjct: 145 VAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASF 203 Query: 218 IFRNPNTRFCYSAVFVEGCCVFGLFPFIAAFLF--DLGETSLSIAGIVIAGFAVGGLFYT 275 + T + G P +F D + GI +A F + Sbjct: 204 RWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQ 263 Query: 276 ATVSS-FLPRLGVKGMMIVGAALVALQLAALAF-GPGWKLQFACMLMMGWGFYM--IHGC 331 A ++ RLG + +++G LAF GW +L+ G M + Sbjct: 264 AMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAM 323 Query: 332 LQVFASELSIGARATAMSLHSFFFFLGQTVGPIAYGF 368 L E G + L VGP+ + Sbjct: 324 LSRQVDEERQGQ---LQGSLAALTSLTSIVGPLLFTA 357
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 56.5 bits (136), Expect = 1e-13 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 4/101 (3%) Query: 1 MQTVLIVIHLMIVAVLIGAVLLQKSEGGGLGMGGGAG----FMSSRGTANLLTRTTAVLA 56 M L+V+ L++ L+G ++LQ+ +G +G GAG S G+ N +TR TA+LA Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 57 VGFFVTSLLLTWLAGYDRKPSSILGNMPGQTQSGGATPVAP 97 FF+ SL+L + S N+ ++ P AP Sbjct: 61 TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAP 101
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 26.9 bits (59), Expect = 0.041 Identities = 9/29 (31%), Positives = 17/29 (58%) Query: 13 ARRLQLERDSRGWSLADLAERSGVSKATI 41 A RL ++ SL ++A+ +GV++ I Sbjct: 20 ALRLFSQQGVSSTSLGEIAKAAGVTRGAI 48
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 45.3 bits (107), Expect = 1e-08 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 50 DSLASADRGERIVLGAFDEHDLIGTVTLQLKLPPNQPHRAEIAKMMTRVSHRKRGVARAL 109 ++ + + + E++ IG ++K+ N A I + +RK+GV AL Sbjct: 55 MDVSYVEEEGKAAFLYYLENNCIG----RIKIRSNWNGYALIEDIAVAKDYRKKGVGTAL 110 Query: 110 LDAAEALARAHHRTILVLDTAE-DGGASSLYEGVGFKLSGI-IPDYAFKPHGGLTGTKIY 167 L A A+ +H L+L+T + + A Y F + + Y+ P Y Sbjct: 111 LHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSNFPTANEIAIFWY 170 Query: 168 WK 169 +K Sbjct: 171 YK 172
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 56.6 bits (136), Expect = 6e-11 Identities = 33/184 (17%), Positives = 57/184 (30%), Gaps = 28/184 (15%) Query: 61 AGRQTSTGSGFLVSADGLAITNYHVVSDAALEPKTYRLEYTGADGTQGN------VTLLA 114 A T SG +V +TN HVV +P + + + + Sbjct: 97 APTGTFIASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITK 155 Query: 115 VDLPNDLALIRVDKQE--------APFFTFDKAALDGTLAKGERLYSLGNPLDLGFTIIE 166 DLA+++ E T A + + G P D + Sbjct: 156 YSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQ---VNQNITVTGYPGDKPVATM- 211 Query: 167 GTYNGLVEHSYNDHIHFTGALNPGMSGGPAVNAQGQVVGI---------NVATRRGGQLI 217 G + + + + + + G SG P N + +V+GI N A + Sbjct: 212 WESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVR 271 Query: 218 SFLV 221 +FL Sbjct: 272 NFLK 275
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 39.2 bits (91), Expect = 3e-05 Identities = 24/130 (18%), Positives = 36/130 (27%) Query: 617 RPDLRANRTPPGASVSPSRPIPPPPVASRGPEGRPRIQQAAPPTVERRAPPPATARLSPP 676 +L A P ++ + PP PE + P E P P Sbjct: 40 VIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 99 Query: 677 PAPPRPPVAPVVRAAPPRPAPPPPQAMRPAAPPPMARPAPPPQMARPAPPPMAMARPAPS 736 P+P V P + P ARP A + P ++A + Sbjct: 100 KPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRA 159 Query: 737 PQMARPAAPP 746 +P P Sbjct: 160 LSRNQPQYPA 169 Score = 36.1 bits (83), Expect = 4e-04 Identities = 28/112 (25%), Positives = 31/112 (27%), Gaps = 1/112 (0%) Query: 654 QQAAPPTVERRAPPPATARLSPPPAP-PRPPVAPVVRAAPPRPAPPPPQAMRPAAPPPMA 712 P + PP P P P P PP V P+P P P P Sbjct: 57 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKR 116 Query: 713 RPAPPPQMARPAPPPMAMARPAPSPQMARPAAPPPRPAPPPAQGKRCPPNVP 764 P A ARP S A + P A P R P P Sbjct: 117 DVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQYP 168 Score = 30.7 bits (69), Expect = 0.020 Identities = 22/140 (15%), Positives = 31/140 (22%), Gaps = 6/140 (4%) Query: 593 PAAQAPNARLPATASPSPAQPLGARPDLRANRTPPGASVSPSRPIPPPPVASRGPEGRPR 652 AP + T P PP + +P+ Sbjct: 41 IELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 100 Query: 653 IQQAAPPTVERRAPPPATARLSPPPAPPRPPVAPVVRAAPPRPAPPPPQAMRPAAPPPMA 712 + P + P + PA P AP RP A +A Sbjct: 101 PKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPA------RPTSSTATAATSKPVTSVA 154 Query: 713 RPAPPPQMARPAPPPMAMAR 732 +P P A A Sbjct: 155 SGPRALSRNQPQYPARAQAL 174
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 52.2 bits (125), Expect = 4e-10 Identities = 48/220 (21%), Positives = 74/220 (33%), Gaps = 29/220 (13%) Query: 18 TLAADLAARPYTKAPAPMMAAIYDWSGFYIGANGGGGWSHNTWDLVGGGREGSHDSSGGT 77 +A LA AP + +Y GA G H+T + G + G Sbjct: 7 AIAVALAGFATVAQAAP------KDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGA 60 Query: 78 IGGQFGYRWQMGPVVFGVEAQGNWADFTGDNVSALFATRNRTKTDAFGLFTGQVGYAFNN 137 GG Y+ G E D+ G K L T ++GY + Sbjct: 61 FGG---YQVNPY---VGFEMG---YDWLGRMPYKGSVENGAYKAQGVQL-TAKLGYPITD 110 Query: 138 VL-LYAKGGAAVTSNKYTITNAVTGAFLASNTDSRWGGVVGAGLEYGFAPNWSVGVEYDH 196 L +Y + G V + V G N D+ V G+EY P + +EY Sbjct: 111 DLDIYTRLGGMVWRADTK--SNVYG----KNHDTGVSPVFAGGVEYAITPEIATRLEY-- 162 Query: 197 LFMDRQTVSFGALGSDSIKQDVDLFTARLNYRFGGPTIAK 236 + T + G + + D + + ++YRFG A Sbjct: 163 ----QWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAP 198
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 35.7 bits (82), Expect = 1e-04 Identities = 32/161 (19%), Positives = 49/161 (30%), Gaps = 27/161 (16%) Query: 50 FYVGFNAGGGSSRDCWNLVSNAGVAVNPAANREGCSGGGGAAVGGQIGYRYQMANWVFGV 109 +Y G G D N G + G GY+ N G Sbjct: 28 WYTGAKLGWSQYHD------------TGFINNNGPTHENQLGAGAFGGYQ---VNPYVGF 72 Query: 110 EAQGDWANFKGTNRNLILPNVSDRSRTNGFGLFTGQVGYAF-DNILVYFKGGAAVVGDRY 168 E DW R +V + + T ++GY D++ +Y + G V Sbjct: 73 EMGYDW-----LGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADT 127 Query: 169 DTFTTGTNVMLDRANTTRWGGTVGAGLEYGFAPNWSVGIEY 209 + G N + T G+EY P + +EY Sbjct: 128 KSNVYGKN------HDTGVSPVFAGGVEYAITPEIATRLEY 162
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.8 bits (134), Expect = 8e-12 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 2/104 (1%) Query: 2 RAADRERLIVEEAIRFFAERGFEG-QTRELAKRMGIAHSVIYRHFPSKEALIERVYQEVY 60 A + + I++ A+R F+++G E+AK G+ IY HF K L +++ Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 61 LSRWSQDWSPLIRDRSKPLQVRLTSFYLDYVARVFEYNWVRIFV 104 S + L + + R+ + Sbjct: 68 -SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLM 110
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.5 bits (87), Expect = 2e-04 Identities = 38/166 (22%), Positives = 58/166 (34%), Gaps = 29/166 (17%) Query: 75 ARMIAADQERPADTSRAMSGNASIVGRDDELEWMLRRWREAAGGDGQVVLLSGEAGIGKS 134 R +A + RP+ +VGR ++ + R D + +++GE+G GK Sbjct: 116 GRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL-MITGESGTGK- 173 Query: 135 RLILEFLAQAAAAPEQCLHYVCAAGRSDSPLHPAICEIETAARIASEDELHERIAKLEAF 194 E +A+A LH R + P I SE HE+ A A Sbjct: 174 ----ELVARA-------LHD--YGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQ 220 Query: 195 LQGLPIAPVDRSALTSLLRHANDGT---DEHGWSPPERRQRVLDAL 237 + A GT DE G P + + R+L L Sbjct: 221 TRST-----------GRFEQAEGGTLFLDEIGDMPMDAQTRLLRVL 255
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.2 bits (107), Expect = 2e-07 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 18/132 (13%) Query: 39 AVFATVESVSVVPAR----GRI-------GGTIAQLSVREGDPVKRGQPIALIGDEKLAL 87 +V VE V+ + GR + ++ V+EG+ V++G + + Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA 134 Query: 88 QLKSLDAQIEALQAQANQAQIDFTRTEGLVERGTLPRVKLDETRTALNVAENSLRAKTAE 147 + + + + + QI +E LP +KL + NV+E Sbjct: 135 DTLKTQSSLLQARLEQTRYQILSRS----IELNKLPELKLPDEPYFQNVSE---EEVLRL 187 Query: 148 RAVVNQQMSEGQ 159 +++ +Q S Q Sbjct: 188 TSLIKEQFSTWQ 199 Score = 39.4 bits (92), Expect = 1e-05 Identities = 22/131 (16%), Positives = 52/131 (39%), Gaps = 12/131 (9%) Query: 88 QLKSLDAQIEALQAQANQAQIDFTRTEGLVERGTLPRVKLDETRTALNVAENSLRAKTAE 147 +L+ +Q+E ++++ A+ ++ L + E L +++ T E Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQLFKN---------EILDKLRQTTDNIGLLTLE 317 Query: 148 RAVVNQQMSEGQVLAPDDGRVLK-KLVTVGSVVLPGDPVVTVAQQNFKL--RLRVPERHA 204 A ++ + AP +V + K+ T G VV + ++ + ++ L V + Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDI 377 Query: 205 LFLKAGDKIRL 215 F+ G + Sbjct: 378 GFINVGQNAII 388
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 482 bits (1243), Expect = e-155 Identities = 221/1087 (20%), Positives = 444/1087 (40%), Gaps = 99/1087 (9%) Query: 14 IASPLTPLFL-LASLVVGLIAVVVIPREEEPQISVPMVDIRVNADGLRAPDGVELVTKPL 72 I P+ L + ++ G +A++ +P + P I+ P V + N G A + VT+ + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVI 65 Query: 73 ETIVKAIDGVEHVYSQTEDDR-VMVTARFLVGTKFEDAILRVHEKIRANLDRIPVGIPEP 131 E + ID + ++ S ++ V +T F GT + A ++V K++ +P + + Sbjct: 66 EQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQ 125 Query: 132 LI-VGRGINDVAVTVLTLSPKPEAAERWSDKDLYELADK-LRAELTKVDNIGLTYISGGG 189 I V + + + +S P + D+ + ++ L++++ +G + G Sbjct: 126 GISVEKSSSSYLMVAGFVSDNPGT----TQDDISDYVASNVKDTLSRLNGVGDVQLFGA- 180 Query: 190 AQQIRVEPSPEKLSLFGVTLQQLVAKVKDANRSFLAGDVRDGGIV------RNVTAGQTL 243 +R+ + L+ + +T ++ ++K N AG + + ++ A Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 244 AGIPDIG-LLLISTRDGRPVYVRDVATVVVGPNLAEHRVWDDARNDKGDWHRVPAVSLAL 302 + G + L DG V ++DVA V +G + + PA L + Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK---------PAAGLGI 291 Query: 303 AKRAGANAVVVSHDIAQRLEGLKTILIPNDVAVTVTRDYGETANEKANELLFHLGLATIS 362 GANA+ + I +L L+ P + V D +E++ L A + Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFF-PQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIML 350 Query: 363 IVVLIAVAIG-WREALVTFVVIPTTILLTMFAANLMGYTINRVSLFALIFSIGILVDDAI 421 + +++ + + R L+ + +P +L T GY+IN +++F ++ +IG+LVDDAI Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAI 410 Query: 422 VVVENIARHWGMHDGRPRLQATVEAVAEVGNPTIVATLTVVAALLPMLFVSGLMGPYMAP 481 VVVEN+ R P+ +AT ++++++ + + + A +PM F G G Sbjct: 411 VVVENVERVMMEDKLPPK-EATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 482 IPANASAAMLFSFVVAMVVAPWLMLRLAPKQVAAAASAHHDAHG------EGRLGRIYRS 535 +AM S +VA+++ P L L + ++ HH+ G Sbjct: 470 FSITIVSAMALSVLVALILTPALCATL----LKPVSAEHHENKGGFFGWFNTTFDHSVNH 525 Query: 536 VARAIVASKRSAWIFLLGVGIATLLSMTLFATKSVTVKLLPFDNKSEIAVMVDLPEGASL 595 ++ S +LL + + LF + LP +++ M+ LP GA+ Sbjct: 526 YTNSVGKILGSTGRYLLIYALIVAGMVVLF--LRLPSSFLPEEDQGVFLTMIQLPAGATQ 583 Query: 596 EDTERTLFAAADIAHQLPEITNVQSYAGTAAPFNFNGLVRHYDLRERPELGELQVNLAAR 655 E T++ L D + E NV+S T F+F+G + G V+L Sbjct: 584 ERTQKVLDQVTDYYLK-NEKANVES-VFTVNGFSFSG--------QAQNAGMAFVSLKPW 633 Query: 656 GDRKRSSHDI-ALDLRQRLKAVSVPSGSSIKVVEVPPGPPVLATLLAEIYGPDAATRRAV 714 +R + A+ R +++ + G V P ++ A + + + + Sbjct: 634 EERNGDENSAEAVIHRAKMELGKIRDG----FVIPFNMPAIVELGTATGFDFELIDQAGL 689 Query: 715 TAEMKKVFAD---------VPFIVDIDDSVGQPRPRLRLSIDQDSLEYFGVEQRDVYDTI 765 + + +V + + + + +L +DQ+ + GV D+ TI Sbjct: 690 GHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTI 749 Query: 766 QTLFGGVSVG-YSHRGEDRNPIEIAVKLPKRARSWSEALASTPVPANTLPGSKTVVELGQ 824 T GG V + RG + + V+ + R E + V + + +V Sbjct: 750 STALGGTYVNDFIDRGRVKK---LYVQADAKFRMLPEDVDKLYVRSA----NGEMVPFSA 802 Query: 825 VLKATMEDGSPMIFRRDGRFADMVMAELAGRFEAPLYGMLAVADRIDAHDWGKLPKPM-I 883 + GSP + R +G + + E AP ++ KLP + Sbjct: 803 FTTSHWVYGSPRLERYNGLPSMEIQGE-----AAPGTSSGDAMALMENLA-SKLPAGIGY 856 Query: 884 GFHGQPTDEQRPTLLWDGEWEITYVTFRDMGAAFGAAILGIYVLVVAQFKSFKLPLVILT 943 + G E+ + A + + +++ + A ++S+ +P+ ++ Sbjct: 857 DWTGMSYQERL--------------SGNQAPALVAISFVVVFLCLAALYESWSIPVSVML 902 Query: 944 PIPLTLIGILLGHWLLGAPFTATSMIGFIALAGIIVRNSILLVDFIRHSG-AEGKTLRDV 1002 +PL ++G+LL L M+G + G+ +N+IL+V+F + EGK + + Sbjct: 903 VVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEA 962 Query: 1003 VLEAGAVRFKPILLTALAAMIGAATILLDP-----IFQGLAISLLFGLASSTLLTVLVIP 1057 L A +R +PIL+T+LA ++G + + + I ++ G+ S+TLL + +P Sbjct: 963 TLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVP 1022 Query: 1058 AIYVALR 1064 +V +R Sbjct: 1023 VFFVVIR 1029 Score = 53.7 bits (129), Expect = 3e-09 Identities = 28/154 (18%), Positives = 70/154 (45%), Gaps = 7/154 (4%) Query: 926 VLVVAQF-KSFKLPLVILTPIPLTLIGILLGHWLLGAPFTATSMIGFIALAGIIVRNSIL 984 LV+ F ++ + L+ +P+ L+G G +M G + G++V ++I+ Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 985 LVDFI-RHSGAEGKTLRDVVLEA-----GAVRFKPILLTALAAMIGAATILLDPIFQGLA 1038 +V+ + R + ++ ++ GA+ ++L+A+ + I++ + Sbjct: 412 VVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFS 471 Query: 1039 ISLLFGLASSTLLTVLVIPAIYVALREPGKPTMK 1072 I+++ +A S L+ +++ PA+ L +P Sbjct: 472 ITIVSAMALSVLVALILTPALCATLLKPVSAEHH 505
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.3 bits (84), Expect = 2e-04 Identities = 37/150 (24%), Positives = 53/150 (35%), Gaps = 20/150 (13%) Query: 27 LPERLRPHKLSDVVGQDHILGPDGALTRMLET-----RTLGSLIFWGPPGTGKTTVARLL 81 P+R D ++G A+ + +T +L+ G GTGK VAR L Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 82 ADATELHFEQISAVFSGV--ADL---------KKVFDAARARR----ETGQGTLLFVDEV 126 D + A+ DL K F A+ R E +G LF+DE+ Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 127 HRFNRAQQDSFLPVMEDGTVVLVGATTENP 156 Q L V++ G VG T Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIR 270
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 67.7 bits (165), Expect = 2e-14 Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 27/160 (16%) Query: 88 LGSGVMIDSSGLVVTNVHVIEGADEVKVSLADKR-----------EYEAEIVLK-DSRTD 135 + SGV++ ++TN HV++ +L + AE + K D Sbjct: 103 IASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGD 161 Query: 136 LAVLRLKGTK------EQFPTLDLANSDDLQVGDVVLAIGNPFGVGQTVTHGIVSALART 189 LA+++ + E ++N+ + QV + G P V+ + + Sbjct: 162 LAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD-------KPVATMWES 214 Query: 190 QVGITDYQ-FFIQTDAAINPGNSGGALVDMTGKLAGINTA 228 + IT + +Q D + GNSG + + ++ GI+ Sbjct: 215 KGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 29.4 bits (66), Expect = 0.011 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 7/117 (5%) Query: 6 FLVFLFVVVAAVAIAVSRALPRGESLPILVGLFLWLAYVGAMSWSGLVASPTLRPPPAVL 65 L V++ + LP S P+ G W V + + S T PA+L Sbjct: 4 LLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTL---VFITSLTF--IPAIL 58 Query: 66 VALPAFLVTVLVLAPLRVGLRIAQSFPVWLLIGAQVFRVGVEM--LLHQLWRDGLVP 120 + + +F ++V LR L + P +L+G +F M ++ +++ D P Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQP 115
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 42.9 bits (101), Expect = 2e-06 Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 1/177 (0%) Query: 5 LFALAMINFAVGTQGFAFAGVLSELSRDLGVTIGQAGLIVGASSITFALGAPFAAAAVAQ 64 L L +++F L +++ D + A +TF++G Q Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 65 IERRRVIVTGLAALALVNLLCAVAPSFAALTAL-RIAAGLATAFVGALATVAAASLVAPE 123 + +R+++ G+ +++ V SF +L + R G A AL V A + E Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 124 KRGRAFAIVMGGLTVAFVLGVPLGSVIGGLYGWRATFAMSAMVCLGSVVLVALTVPA 180 RG+AF ++ + + +G +G +I W + + + L+ L Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKE 192
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 38.6 bits (90), Expect = 2e-05 Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 8/78 (10%) Query: 6 ILITGASGKTGGAVADELLTQGFPVRAL--------VRRLDARSEALAARGAQIVVGDLF 57 L+TGA+G G V+ LL G V + V AR E LA G Q DL Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 58 DARQVADAMRGVQRAYFV 75 D + D Sbjct: 63 DREGMTDLFASGHFERVF 80
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.4 bits (105), Expect = 5e-07 Identities = 63/288 (21%), Positives = 102/288 (35%), Gaps = 31/288 (10%) Query: 65 LFVLFETWLVPVEGWFVDKYGPRIVVLVGGVLCAIGWMINAYATSLNGYYVGMIIAGI-- 122 L+ L + PV G D++G R V+LV A+ + I A A L Y+G I+AGI Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITG 110 Query: 123 ----GAGGVYG--TCVGNALKWFPDKRGLAAGITAAGFGAGSAATVVPIQAMIRDSGFQT 176 AG T + F G +A FG G A V + ++ Sbjct: 111 ATGAVAGAYIADITDGDERARHF--------GFMSACFGFGMVAGPV-LGGLMGGFSPHA 161 Query: 177 TFLYFGLGQGIIIVILAFFLFAPKDG-QVPAVTQNSNLVQSRRNYNPTEVIRQPIFWLMY 235 F G+ + F L G + P + N + S R + LM Sbjct: 162 PFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFR----WARGMTVVAALMA 217 Query: 236 FMFVIVGAGGLMVTANLKPIAGDWKVDNIPVTLIGMTMTAVTFAATIDRILNGLTRPFFG 295 F++ G V A L I G+ + T IG+++ A ++ + + G Sbjct: 218 VFFIMQLVGQ--VPAALWVIFGEDRFHWDATT-IGISLAAFGILHSLAQAM------ITG 268 Query: 296 WISDMIGRENTMFIAFGMEGIGIWALYMLGHDPVWFVILSGFVFFAWG 343 ++ +G + + +G G L + F I+ G Sbjct: 269 PVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIG 316
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.1 bits (112), Expect = 9e-08 Identities = 54/289 (18%), Positives = 103/289 (35%), Gaps = 34/289 (11%) Query: 64 IFVVTETWLVPVEAWFVDKYGPRVVIMFGGVMIALAWVLNSYADSLTLLYAGAVIGGI-- 121 ++ + + PV D++G R V++ A+ + + + A L +LY G ++ GI Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITG 110 Query: 122 GAGAVYG------TCVGNALKWFPDRRGLAAGATAAGFGAGAALTVVPIASMIASSGYQS 175 GAV G T + F G + G AG + ++ + Sbjct: 111 ATGAVAGAYIADITDGDERARHF----GFMSACFGFGMVAGPV-----LGGLMGGFSPHA 161 Query: 176 AFFTFGIGQGVVVFILALFLRPPTKAA---PARKKQLNLPQSKIDYTPPQVLRTPIFWIM 232 FF + F+ FL P + P R++ LN P + + T + +M Sbjct: 162 PFF-AAAALNGLNFLTGCFLLPESHKGERRPLRREALN-PLASFRW---ARGMTVVAALM 216 Query: 233 YLVFVMVASGGLMTAAQIAPIAHDFKIANEPVTLAGFQMAALTFAISLDRIFDGFGRPLF 292 + F+M G + A + F + T G +AA SL + + Sbjct: 217 AVFFIMQLVGQVPAALWVIFGEDRF---HWDATTIGISLAAFGILHSLAQAM------IT 267 Query: 293 GWISDTIGREHTMFIAFGTAALMLLTLSNYGQNPIVFVLATAVYFGVFG 341 G ++ +G + + + L+ + + F + + G G Sbjct: 268 GPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIG 316 Score = 29.8 bits (67), Expect = 0.025 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 4/126 (3%) Query: 290 PLFGWISDTIGREHTMFIAFGTAALMLLTLSNYGQNPIVFVL-ATAVYFGVFGEIYSLFP 348 P+ G +SD GR + ++ AA+ + P ++VL + G+ G ++ Sbjct: 61 PVLGALSDRFGRRPVLLVSLAGAAVDYAIM---ATAPFLWVLYIGRIVAGITGATGAVAG 117 Query: 349 ATSGDTFGSKYAATNNGMLYTAKGTASLLVPLASLVSAKYGWQAVFVIGVALNATAALMA 408 A D A + G + G + P+ + + A F ALN L Sbjct: 118 AYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTG 177 Query: 409 LFVIKP 414 F++ Sbjct: 178 CFLLPE 183
>PF06580#Sensor histidine kinase Length = 349 Score = 35.2 bits (81), Expect = 8e-04 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 24/104 (23%) Query: 663 LLSNAVKF----TPEGGRVTMRSRVFEDKVVLIIADTGIGIPAQSLARLGRPFEQVESQM 718 L+ N +K P+GG++ ++ V L + +TG + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL------------------AL 304 Query: 719 TKTYHGSGLGLA-IARSLAQLHGGSMRLR-SRLEHGTVVRVTLP 760 T +G GL + L L+G +++ S + V +P Sbjct: 305 KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 28.5 bits (63), Expect = 0.019 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 46 IGFEVAFRRYLNQAYSWNLWGAAHVIHGGCSDDGFEYFRRWLVTRGQ 92 + F+ A R LNQ+Y++ + AA D F +FR LV + Sbjct: 1117 LNFKSALLRDLNQSYNYLAYSAA--TRASYGYD-FAFFRNALVLKPS 1160
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.6 bits (204), Expect = 2e-18 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 4/116 (3%) Query: 723 GTILLVEDEEGLRALNARGLRSRGYSVIEASNGIEAMEALEECNGELDLVVSDVVMPEMD 782 TIL+ +D+ +R + + L GY V SN + G+ DLVV+DVVMP+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPDEN 61 Query: 783 GPTLLKVMREKNPDIKIIFVSGYAE-DAFEKSLPENQQFAFLPKPFTLSQLVAAVK 837 LL +++ PD+ ++ +S K+ E + +LPKPF L++L+ + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKAS-EKGAYDYLPKPFDLTELIGIIG 116
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.4 bits (68), Expect = 0.008 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 94 KPEENQQQVSPAEKAILERLQSRRQELEARQREIDIRESLLKAAEQRIQSKTEEMKAIE- 152 K EE ++ + A + + + RR+E+E + E + + L +A E+R+ + +EE KA+E Sbjct: 134 KAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEI 193 Query: 153 --SRISGAQAAKTEADNARFKSIVTMYEGMKPKDA 185 ++S AQ+ + D + + +DA Sbjct: 194 AQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDA 228
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 280 bits (718), Expect = 2e-94 Identities = 82/322 (25%), Positives = 157/322 (48%), Gaps = 15/322 (4%) Query: 66 VLSQEEIDNLLGF-TAGEVNLDDHSGIRAIIDSAMVSY--------ERLPMLEIVFDRLV 116 VLSQ+EID LL ++G+ +++D I + + E++ L ++ + Sbjct: 4 VLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETFA 63 Query: 117 RLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLAMVDSTL 176 RL TTSL V V + + + + +++ SIP P+ L+V + + + VD ++ Sbjct: 64 RLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSI 123 Query: 177 IYSIIDVLLGGRRGNTQLRVEGRPYTTIETNLVKRLIEVVLADAEQAFRPLSPVRFTIDR 236 +SIID L GG +++ R T IE ++++ +I +LA+ +++ + +R + + Sbjct: 124 TFSIIDRLFGGTGQAAKVQ---RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQ 180 Query: 237 LETNPRFAAISRPANAAILVKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMGEKFGR 296 +ETNP+FA I P+ +LV L + + G + +PY TIEPI L F R Sbjct: 181 IETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240 Query: 297 DPV--WEGHFATEITRAEVAVDAVLYEADVPLKQLMRLKVGDTLPL-DIRPDALVAVRCG 353 + G +++ ++ V A + + ++ ++ L+VGD + L D + G Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300 Query: 354 NTMLTEGRMGRVGDRVAIRVTK 375 N + G VG ++A ++ + Sbjct: 301 NRKKFLCQPGVVGKKIAAQILE 322
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 38.8 bits (90), Expect = 2e-05 Identities = 9/48 (18%), Positives = 21/48 (43%) Query: 213 SITQGSLEQANVDVVSEMSELIAAQRAYEMNAKVISAADQMMQSTTAL 260 ++ + V++ E L Q+ Y NA+V+ A+ + + + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 32.2 bits (73), Expect = 0.002 Identities = 10/34 (29%), Positives = 20/34 (58%) Query: 4 LHTAATGMAAQELNVQVISNNIANLRTTGFKKQT 37 ++ A +G+ A + + SNNI++ G+ +QT Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 184 bits (468), Expect = 3e-60 Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 14/199 (7%) Query: 68 PKPETVSYAPNSLWRN------GSRAFFKDQRAHQIGDLLTVTVSISDKANFANETQRSR 121 P P A S++++ G + F+D+R IGD LT+ + + A+ ++ SR Sbjct: 39 PVPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASR 98 Query: 122 TNKEDSGITDFIGSKTLGAQAQKVLPGRI--LTADGTSSSDGKGTIQRSESLTTSVAAVV 179 K + G T+ Q + + A G ++ +GKG S + + ++ V Sbjct: 99 DGKTNFGF------DTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTV 152 Query: 180 TQVLPNGNLVVEGKQEIRVNYEIRELIVAGIVRPEDIQSDNTIDSTKIAQARISYGGRGQ 239 QVL NGNL V G+++I +N + +G+V P I NT+ ST++A ARI Y G G Sbjct: 153 DQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGY 212 Query: 240 ITDVQQPRYGQQVMDILLP 258 I + Q + Q+ L P Sbjct: 213 INEAQNMGWLQRFFLNLSP 231
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 81.8 bits (202), Expect = 1e-19 Identities = 78/339 (23%), Positives = 121/339 (35%), Gaps = 48/339 (14%) Query: 4 VLVTGGSGFIATHVILQLLAAGHRVR-----TTLRTPDRQSEVLAALARGGATDPHLLSF 58 LVTG +GFI HV +LL AGH+V + L LA+ G F Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPG------FQF 56 Query: 59 HAADLTRDDGWAA--AVSGCDYVLHIA-------SPLPDHVPDDENELIVPARDGTLRVL 109 H DL +G A + V S H D N G L +L Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNL------TGFLNIL 110 Query: 110 RAARDAGVTRVVLTSSFSAVAYGHRPRAKPFDEADWTDLDGPDVQPYPKSKTLAERAAWA 169 R + ++ SS S+V YG R PF D D P V Y +K E A Sbjct: 111 EGCRHNKIQHLLYASS-SSV-YG-LNRKMPFSTDDSV--DHP-VSLYAATKKANELMAHT 164 Query: 170 FLASEG---GALELATICPVAVLGPVLGPDFSPSIALVQAMLQGRAPA---APRIHLGLV 223 + G L T V GP PD + +AML+G++ ++ Sbjct: 165 YSHLYGLPATGLRFFT-----VYGPWGRPDMALFK-FTKAMLEGKSIDVYNYGKMKRDFT 218 Query: 224 DVRDVADLHLRAMTDPAARNERFLAVAGSPLSILEIATVLRTRLGNAGRRAPRRELPNWL 283 + D+A+ +R + ++ G+P + + V +GN + L Sbjct: 219 YIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVY--NIGN-SSPVELMDYIQAL 275 Query: 284 ARIVAL-AVPQLRDVKPLLGLRRTASSDKARRLLGWNPR 321 + + A + ++P L +A + ++G+ P Sbjct: 276 EDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPE 314
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 46.3 bits (110), Expect = 2e-08 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 11/76 (14%) Query: 1 MKIAVAGASGRAGSRITAELANRGHQVTGI---------ARNPDKIE--KHANVTAVQGD 49 MK V GA+G G ++ L GHQV GI + ++E + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 50 ANDRAALAKLWAGHDV 65 DR + L+A Sbjct: 61 LADREGMTDLFASGHF 76
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 111 bits (278), Expect = 2e-28 Identities = 85/414 (20%), Positives = 169/414 (40%), Gaps = 21/414 (5%) Query: 18 IAVLVALATFMEVLDTTIANVALPYIAGGMGVSQDESSWVVTTYLVSNAIILTASSYLAK 77 I + + + +F VL+ + NV+LP IA ++WV T ++++ +I L+ Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 78 RFGRKAFFIMCLGLFTTSSVLCGFAWNLQVLLMF-RILQGLGGGGMVPVAQSILADSFPP 136 + G K + + + SV+ + LL+ R +QG G + ++A P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 137 EKRGQAFALFGVAVVVAPVVGPTLGGYLSDNASWHWCFLINGPVGVAAMLLIWLILKEPA 196 E RG+AF L G V + VGP +GG ++ HW +L+ P + ++ + ++K Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAH--YIHWSYLLLIP--MITIITVPFLMKLLK 190 Query: 197 EVTEERRKQAHGFDVVGFVLVATFLGALELMLDRGLEDDWFDSRFIVITAAVCATAFVAM 256 + E R K FD+ G +L+ +G + ML F ++ +F+ Sbjct: 191 K--EVRIKGH--FDIKGIILM--SVGIVFFMLFTTSYSISFLIVSVL--------SFLIF 236 Query: 257 IPWEMNQKNPTVDVRMLASRQFGACFLVMLATGAILLGTTQMLPQMVQQDFGY-TATWAG 315 + +P VD + + F L + G M+P M++ TA Sbjct: 237 VKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGS 296 Query: 316 LVLSPGGLVTMAMMFVVGRLSGKVQPKYMIMTGAAVVAFAMYDLTRVYANVDFWFFAESR 375 +++ PG + + ++ G L + P Y++ G ++ + + WF Sbjct: 297 VIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTAS-FLLETTSWFMTIII 355 Query: 376 MLIGIGLPLIFLSITTASYNGIPPERTDQASALINAARNTGGSIGVSLAANILA 429 + + GL I+T + + + +L+N G+++ +L+ Sbjct: 356 VFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 110 bits (276), Expect = 2e-28 Identities = 40/363 (11%), Positives = 114/363 (31%), Gaps = 81/363 (22%) Query: 119 IAPKVSGYITSVPVTDNQHVKAGDVIARID------------------------------ 148 I P + + + V + + V+ GDV+ ++ Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 149 ----------------------DRDYKTALAQAEAQVRSAEAAIHNIDAQIAVQQAQITA 186 + + + + Q + + + + + ++A+ Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLT 218 Query: 187 GQAQVDQSQAGLTFAQQQADRYQQLARTGSGTVQSEQQYTSQLQQAKAALTSSQANLQVA 246 A++++ + + + D + L + + + ++ +A L ++ L+ Sbjct: 219 VLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQI 278 Query: 247 QRQLESLKA---------------QRESADANLAQAQAQRDQAQLNLSYTVVTAAQPGRV 291 + ++ S K + N+ + + + +V+ A +V Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKV 338 Query: 292 VNLSA-ADGQFAAQGTALSMFVPDE--VWVTANFKETQLDQMRPGQPVTLEIDAYPERE- 347 L +G L + VP++ + VTA + + + GQ ++++A+P Sbjct: 339 QQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRY 398 Query: 348 --IRGHVASVQSGSGPAFSLLPPQNATGNYVKIVQRVPVKIDMDDPPTDVALGPGMSVVP 405 + G V ++ + G ++ + ++ L GM+V Sbjct: 399 GYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGNK-NIPLSSGMAVTA 450 Query: 406 TVR 408 ++ Sbjct: 451 EIK 453
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 37.0 bits (86), Expect = 2e-04 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 7/57 (12%) Query: 23 QADAVAIKDGLFTAVGHA--QDVMK----LAGPQTQVIDLRGRRVLPGLIDNHLHII 73 +AD + +KDG A+G A D+ + GP T+VI G+ V G +D+H+H I Sbjct: 85 KAD-IGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFI 140
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 447 bits (1152), Expect = e-155 Identities = 137/385 (35%), Positives = 202/385 (52%), Gaps = 11/385 (2%) Query: 195 DRERLMAESHRLQKELMELKPAPAKGKKVLVDGIVGDSPALRALLDKINVVAKSNAPVLL 254 D L+ R E + +P+ + +VG S A++ + + + +++ +++ Sbjct: 107 DLTELIGIIGRALAEP-KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMI 165 Query: 255 RGESGTGKELVAKAIHELSNRAKRPFIKINCAALPETVLESELFGHEKGAFTGAINARKG 314 GESGTGKELVA+A+H+ R PF+ IN AA+P ++ESELFGHEKGAFTGA G Sbjct: 166 TGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTG 225 Query: 315 RFELADKGTLFLDEIGEISPAFQAKLLRVLQEQEFERVGGNQTIKVDVRIVTATNRNLEE 374 RFE A+ GTLFLDEIG++ Q +LLRVLQ+ E+ VGG I+ DVRIV ATN++L++ Sbjct: 226 RFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQ 285 Query: 375 AVARNEFRADLYYRISVVPIKLPPLRDRRSDIPQLAREFLRRFNCENERDLTFDVSAIEV 434 ++ + FR DLYYR++VVP++LPPLRDR DIP L R F+++ E FD A+E+ Sbjct: 286 SINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALEL 345 Query: 435 LMHCGFPGNVRELENCVQRTATLAAGSAIGQHDFACSRNECMSAILWKGNTVTPPPPRGQ 494 + +PGNVRELEN V+R L I + + + + G Sbjct: 346 MKAHPWPGNVRELENLVRRLTALYPQDVITREIIENE----LRSEIPDSPIEKAAARSGS 401 Query: 495 PMVPLPILPRTSAPIETPVDLPAVEADDGEYSEAMDGGAVPERERIVQAMERSGWVQAKA 554 + + + D M E I+ A+ + Q KA Sbjct: 402 LSISQAVEENMRQYFASFGDALPPSGLYDRVLAEM------EYPLILAALTATRGNQIKA 455 Query: 555 ARLLGLTPRQIGYALKKYNIEVKRF 579 A LLGL + +++ + V R Sbjct: 456 ADLLGLNRNTLRKKIRELGVSVYRS 480
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 100 bits (249), Expect = 3e-27 Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 23/260 (8%) Query: 38 EQKTLVLTGGSRGIGHATARLFSDAGWRIITCSRQPFDGGRCPWDAGPDNHVQVDLSDRK 97 E K +TG ++GIG A AR + G I P + + Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 98 AIPRAIADIKDRL--DGAPLHALINNAAISPKAEDGGRLDSLATSVETWMTVFHVNFLGP 155 AI +I R+ + P+ L+N A + G + SL S E W F VN G Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRP----GLIHSL--SDEEWEATFSVNSTGV 120 Query: 156 ILLARGLFQELK-RGQGAVVNVTSIVGTRVHPFAGTAYATSKAALACLTREMAHDFAPHG 214 +R + + + R G++V V S V + AYA+SKAA T+ + + A + Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGS-NPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 215 IRVNAIAPGEIKTEM-----VSPETEAR--------FSPLIPMRRIGAPEEVAKVLFFLC 261 IR N ++PG +T+M + F IP++++ P ++A + FL Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 262 SDAASYVTGEEIQINGGQHL 281 S A ++T + ++GG L Sbjct: 240 SGQAGHITMHNLCVDGGATL 259
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.8 bits (80), Expect = 3e-04 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 4/65 (6%) Query: 201 AITAPYDGILRGI-VRDGSDVPAGIALAEIDPRGRHAQWTGIDAKGQALAQATLAAIRLH 259 I + I++ I V++G V G L ++ G A +L QA L R Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEAD---TLKTQSSLLQARLEQTRYQ 154 Query: 260 AADRI 264 R Sbjct: 155 ILSRS 159
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 111 bits (278), Expect = 2e-31 Identities = 81/256 (31%), Positives = 117/256 (45%), Gaps = 13/256 (5%) Query: 37 AGKLTGKKAVITGGDSGIGRAVAIAYAREGADILIAYLDEHDDAKEVQQLIEKEGRKALL 96 A + GK A ITG GIG AVA A +GA I + K V L + E R A Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSL-KAEARHAEA 61 Query: 97 MSGNIQDPAHCRAIIQRAVDEFGGIDILVNNAAHQATFSDIGDISDEEWEITFRTNIHAM 156 +++D A I R E G IDILVN A I +SDEEWE TF N + Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVN-VAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 157 FYLTKAAVPHMKP--GSAIVNTASVNADMPNPGLLAYATTKGAIQNFTGGLAQMLAEKGI 214 F +++ +M +IV S A +P + AYA++K A FT L LAE I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 215 RANAVAPGPI-----WTPLIPSTMPEEKMKSFGQQ----VPMQRAGQPAELATAYVMLAD 265 R N V+PG W+ E+ +K + +P+++ +P+++A A + L Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 266 PLSSYTSGTTVAVTGG 281 + + + + V GG Sbjct: 241 GQAGHITMHNLCVDGG 256
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 38.8 bits (90), Expect = 3e-05 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 15/119 (12%) Query: 301 PGSTLFYTDP-EVRAPYQAWIGKIA---RRTAANHVCLEVAGHTSATGYSGVNDRLSVLR 356 LF + ++ QA + ++ + V G+T G N LS R Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERR 277 Query: 357 AAYVKDQILAEDKGL-AGRLIASGRGSREMIVGTGRDDPSD--------ALDRRVELRI 406 A V D +++ KG+ A ++ A G G + G D+ A DRRVE+ + Sbjct: 278 AQSVVDYLIS--KGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 72.3 bits (177), Expect = 4e-17 Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 2/112 (1%) Query: 63 GRNEPPPSKRPPIAPELTSLP-TFNVDIQFDVDTPIVRPESYQTVGRIADAMVYADLLPY 121 G P + P APE+ + T D+ F+ + ++PE + ++ + D Sbjct: 194 GEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDG 253 Query: 122 TFLIVGHIEANGKRESNVILSQRRADAIRDILANTFKISVKRLQSVGLGEEQ 173 + +++G+ + G N LS+RRA ++ D L + I ++ + G+GE Sbjct: 254 SVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLI-SKGIPADKISARGMGESN 304
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 74.8 bits (184), Expect = 3e-17 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 16/129 (12%) Query: 1 MKVLVTGGSGFIGHHLVSALVARGMDVRVLDIRSPTHMMAEAEY------------LEGS 48 MK LVTG +GFIG H+ L+ G V +D + + ++ + + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 49 VLDADLVKR--AVAGVDQVYHLAGLPGM--WMPDREDFYRVNCVGTETVLAAARAGKVRR 104 + D + + A ++V+ + + + + N G +L R K++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 105 FLHCSTESI 113 L+ S+ S+ Sbjct: 121 LLYASSSSV 129
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 29.6 bits (66), Expect = 0.011 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 9/48 (18%) Query: 144 LILGMIATGIAVGTVTAVLGAILISLGMAWKAKMEEVFLAQELGPDYV 191 I+G IATG AVGTV S + W K E PD V Sbjct: 43 AIVGGIATGAAVGTV---------SGLLGWGLKQAEEANKTPDKPDKV 81
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 32.5 bits (74), Expect = 0.001 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 33/121 (27%) Query: 32 PLGTGSVRAAPSPAAASAASTTHVYLLRGVLNIFSLG------LD-DIAAKLDSQGIPNT 84 LG + PS +A+S T + L IF G LD + L QG P Sbjct: 28 NLGLTLLPVEPSTQVNAASSHT-----KPPLVIFLSGDGGWATLDKAVGGILQQQGWP-- 80 Query: 85 VANFVSWSSL------ADDAATAYKAGRI----------KTIILVGHSSGATALPDMINK 128 V WSSL D I + +IL+G+S GA +P ++N+ Sbjct: 81 ---VVGWSSLKYYWKQKDPKDVTQDTLAIIDKYQAEFGTQKVILIGYSFGAEVIPFVLNE 137 Query: 129 L 129 + Sbjct: 138 M 138
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 66.5 bits (162), Expect = 4e-15 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 1/219 (0%) Query: 19 RTILQSIVSPVVSTSLYFVVFGAAIGSRISEVQGVSYGTFIVPGLVMLSVLTQSIANASF 78 + L S++ + +Y GA +G + V GVSY F+ G+V S +T + + Sbjct: 29 KAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAAGMVATSAMTAATFETIY 88 Query: 79 GIYFPKFI-GTIYEILSAPISHVEIVLGYVGAAATKSIILGLIILATAGLFVPLHIQHPV 137 + T +L + +IVLG + AATK+ + G I A + Sbjct: 89 AAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLSLL 148 Query: 138 WMLSFLVLTAVTFSLFGFIIGIWADGFEKLQMIPMLVVTPLTFLGGSFYSVNMLPPTWHS 197 + L + LT + F+ G ++ A ++ LV+TP+ FL G+ + V+ LP + + Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208 Query: 198 IALLNPVVYLISGFRWSFYEIADVRVEISVAMTLAFLAI 236 A P+ + I R V V V ++ I Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVI 247
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.003 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 9/59 (15%) Query: 14 RAPQRLTYL-LAALALFILALAWVALPQFAHAQGIIRGAHEGAHEGHR--IAGPVGGVV 69 R P+ + Y + L + + + A A G + H G I +V Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKL------THSGRSKEIKPIENSIV 107
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 23.6 bits (50), Expect = 0.043 Identities = 12/36 (33%), Positives = 16/36 (44%) Query: 7 PAREPANSVMPGLVPGIHVDPSTPADVDGRDKPGHD 42 PA PAN+ P PG +P D++ P D Sbjct: 333 PAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTD 368
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 31.1 bits (70), Expect = 3e-04 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 14 LAKTLRLSPDRIDTTSKFSRLGLDSAMVVYVMMELEEKLGLEMSMDDLYDYPTIDELSQQ 73 +A+ L+ +P+ I GLDS + + ++E + G E++ +L + PTI+E + Sbjct: 239 IAELLQETPEDITDQEDLLDRGLDS-VRIMTLVEQWRREGAEVTFVELAERPTIEEWQKL 297 Query: 74 LAGR 77 L R Sbjct: 298 LTTR 301
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 93.8 bits (233), Expect = 1e-22 Identities = 75/401 (18%), Positives = 143/401 (35%), Gaps = 17/401 (4%) Query: 37 FMAILDIQIVSASLSEIQAGLSASSSEVSWVQTAYLIAEVIAIPLSGFLSRALGTRLLFA 96 F ++L+ +++ SL +I + + +WV TA+++ I + G LS LG + L Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 97 ISAAGFTISSFLCGFA-SSIEQMIVWRALQGFLGAGMIPTVFASAYTVFPRSKFHIVGPI 155 S + S +I+ R +QG A V P+ + Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 156 IGLVATLAPTVGPTVGGYITDAMSWHWLFFVNIVPGVIITTGVLALVDFDQPNFALLERF 215 IG + + VGP +GG I + W +L + + I V L+ + + F Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM----ITIITVPFLMKLLKKEVRIKGHF 199 Query: 216 DWWGLLFMAGFLGSLEYVLEEGPQYEWLQDTSVAICAAVCAVSAVCFFWRVLTADEPIVD 275 D G++ M+ + Y V +S + F + +P VD Sbjct: 200 DIKGIILMSVGIVFFMLFTT---SYSISF-------LIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 276 LFAFGNRNFAVGCLLQFCIGIGLYGLTYIYPRYLAEVRGYSALMIGET-MFVSGVTMFLM 334 N F +G L I + G + P + +V S IG +F +++ + Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 335 APVVGRLMLKIDMRLIIAFGLVIFAIGSYEMTGITRDYDFWELFLPQVLRGVGMMCAMVP 394 + G L+ + ++ G+ ++ + W + + V G+ Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVSFLTA-SFLLETTSWFMTIIIVFVLGGLSFTKTV 368 Query: 395 TNNIALGTLAPDRVKNASGLFNLMRNLGGAVGLAVINQVLN 435 + I +L L N L G+A++ +L+ Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 110 bits (276), Expect = 2e-28 Identities = 54/361 (14%), Positives = 109/361 (30%), Gaps = 81/361 (22%) Query: 137 VSGHIQEIVPRDNSVVHKGDVIFRIDDGDYKIAVDAARTKIATQEATIARIG-------- 188 + ++EI+ ++ V KGDV+ ++ + ++ + R Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 189 -------------------------------------RQVAAQQSAVEQAQANLTSSEAA 211 Q ++ +++ +A + A Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 212 M--KRAGLDYERQQ-----ALSSKGFASHATFEQSEAARDQGQAAVRAAQAAFDAARDNV 264 + E+ + +L K + + E + +R ++ + + Sbjct: 223 INRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI 282 Query: 265 EVTKAQQ---------------AEAQAQLAELKTSLAKAERDLEFAIVRAPVDGTFSNRL 309 K + + + L LAK E + +++RAPV Sbjct: 283 LSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLK 342 Query: 310 VST-GDFVAVGQRLGNVVPLDDVF-IDANYKETQLKRIRPGQPVTIKVDAYGAR---GFK 364 V T G V + L +VP DD + A + + I GQ IKV+A+ Sbjct: 343 VHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLV 402 Query: 365 GVVDSISPAAGSVFTLLPPDNATGNFTKIVQRLPVRIRVPKEVARQNLLRAGMSVYVTVD 424 G V +I+ A D G ++ + + L +GM+V + Sbjct: 403 GKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGN--KNIPLSSGMAVTAEIK 453 Query: 425 T 425 T Sbjct: 454 T 454
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 70.4 bits (172), Expect = 4e-17 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Query: 12 VQDEDSSKRRQILDGARKVFMDLGFDGASMGEIARAAGVSKGTLYVYFSDKIGLFEAIVE 71 + E R+ ILD A ++F G S+GEIA+AAGV++G +Y +F DK LF I E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 72 EETRTAL-LFRFDTSRDIATNLLGFGEAYIALVCRPGGGSAIRTVMAIAER 121 L ++ L E I ++ R +M I Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFH 115
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.2 bits (65), Expect = 0.048 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 7/91 (7%) Query: 26 PERVPAELPTVDVDAPKRTTRSKPKPQIRRDAQRAQPGVSRMPVTQPSAATAASAPSGAP 85 PE +P V K + KPKP+ + ++ + V + ++P Sbjct: 80 PEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDV-------KPVESRPASPFENT 132 Query: 86 NVGSGAPQVQGMASETVITGDEINARPATRP 116 A+ +T R +R Sbjct: 133 APARPTSSTATAATSKPVTSVASGPRALSRN 163
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 60.6 bits (147), Expect = 5e-12 Identities = 32/192 (16%), Positives = 68/192 (35%), Gaps = 19/192 (9%) Query: 87 GAQASGRLVALNVKLGQKVKAGELIAEIDSLTQQYTLRTNEAALRNVRAQRDEKQATLAL 146 + R+ + + + IA+ L Q+ LR ++Q ++ ++ + Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILS 284 Query: 147 AEANLARQQTTLAQKASSRADYDSAEATVKQTQAQIAQLEAQLVEAEVAIETARVNLGYT 206 A+ + + ++QT I L +L + E + Sbjct: 285 AKEEYQLVTQLFKNEILDK---------LRQTTDNIGLLTLELAKNEE-------RQQAS 328 Query: 207 KITAPIDGTVLSI-VTQQGQTVNAVQSAPTIVVLGQVETMTVRVEISEADVVRVKPGQNV 265 I AP+ V + V +G V + +V++ + +T+ V + D+ + GQN Sbjct: 329 VIRAPVSVKVQQLKVHTEGGVVTTAE--TLMVIVPEDDTLEVTALVQNKDIGFINVGQNA 386 Query: 266 YFTILGDPDRRY 277 + P RY Sbjct: 387 IIKVEAFPYTRY 398 Score = 59.5 bits (144), Expect = 1e-11 Identities = 26/181 (14%), Positives = 61/181 (33%), Gaps = 20/181 (11%) Query: 21 PSKPKRRRRWPLIVTGLAVLVVLGVGVKRATRNPNANLATAPVTIGDIEQTVLATGTLKP 80 P + R I+ L + +L V +G +E A G L Sbjct: 52 PVSRRPRLVAYFIMGFLVIAFILSV-------------------LGQVEIVATANGKLTH 92 Query: 81 V-KLVAVGAQASGRLVALNVKLGQKVKAGELIAEIDSLTQQYTLRTNEAALRNVRAQRDE 139 + + + + + VK G+ V+ G+++ ++ +L + +++L R ++ Sbjct: 93 SGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTR 152 Query: 140 KQATLALAEANLARQQTTLAQKASSRADYDSAEATVKQTQAQIAQLEAQLVEAEVAIETA 199 Q E N + + + + Q + + Q + E+ ++ Sbjct: 153 YQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKK 212 Query: 200 R 200 R Sbjct: 213 R 213
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 43.7 bits (103), Expect = 7e-07 Identities = 47/142 (33%), Positives = 62/142 (43%), Gaps = 9/142 (6%) Query: 39 VVFASYVVSLLAALLTVGGLSDYVGRRPVMLAALLINAAAMMIFAEADSLWQLIAARMVQ 98 ++ A Y + A +G LSD GRRPV+L +L A I A A LW L R+V Sbjct: 47 ILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVA 106 Query: 99 GLSVGIGTTAFGAAILDT----SRTRGPLLNSVAAFLGMTAGALVSATLIVFVPDPLHAV 154 G++ G A GA I D R R S GM AG ++ + F P HA Sbjct: 107 GITGATGAVA-GAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP---HAP 162 Query: 155 YVVVLAFTLLMLLL-LVVMPES 175 + A L L ++PES Sbjct: 163 FFAAAALNGLNFLTGCFLLPES 184
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 43.5 bits (102), Expect = 1e-07 Identities = 23/168 (13%), Positives = 50/168 (29%), Gaps = 17/168 (10%) Query: 8 RIGGRSARIQTAVHEAVKRLSAATDRSALTVPQIASEAGVTPSTIYRRWGDLAALLADVA 67 + + + + + RL + S+ ++ +IA AGVT IY + D + L +++ Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 68 VERLRPAG------DPEDTGATASDLRLFIEQYAEEMSSPVGQALMRDVL---------W 112 G + G S LR + E + + L+ +++ Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 113 PAGENFPAQCCTFTRANLETIASRAAARGE--RPFDVEEVIDHVVAPI 158 + C + +E + I Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 27.9 bits (62), Expect = 0.011 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 4/84 (4%) Query: 10 RILVVEDEYMLADELRGELGEAGATVLGPVGTVADALALATREGRIDGAVLDVNLRGEMA 69 ILV +D+ + L L AG V A G D V DV + E A Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWI-AAGDGDLVVTDVVMPDENA 62 Query: 70 FPVADLL--IESGVPFVFTTGYDE 91 F + + +P + + + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNT 86
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 104 bits (261), Expect = 3e-25 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 639 PRARILLADDNADMRDYVRRLLVTR-YDVEAVADGKAALEAIARAKPDLVLSDVMMPQLD 697 A IL+ADD+A +R + + L YDV ++ IA DLV++DV+MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 698 GMQLLARVRADAQFSTVPVILLSARAGEESRVEGMQAGADDYLIKPFSARELLARVEAHL 757 LL R++ +PV+++SA+ + ++ + GA DYL KPF EL+ + L Sbjct: 62 AFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 758 KMARLRAEATERLRAS 773 + R E Sbjct: 120 AEPKRRPSKLEDDSQD 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.0 bits (135), Expect = 2e-10 Identities = 41/123 (33%), Positives = 54/123 (43%), Gaps = 10/123 (8%) Query: 372 TILIVEDDALVRDYVVAQVRRLGYRTLSASNAAEGLAIIDSPERIDLLFTDVIIPGGKNG 431 TIL+ +DDA +R + + R GY SNAA I + DL+ TDV++P N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDE-NA 62 Query: 432 RQLAIEAEKRRPGLKVLYTSGYT--ENAI--VHHGRLDADVLLLAKPYLSADLARMIRTA 487 L +K RP L VL S AI G D L KP+ +L +I A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYD----YLPKPFDLTELIGIIGRA 118 Query: 488 LEA 490 L Sbjct: 119 LAE 121
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 34.4 bits (78), Expect = 9e-04 Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 4/213 (1%) Query: 309 PTQQPAVATKPDGSELEPAKGNTTPAPSAHERGAAPGNVQTNGQIDPSAQAATALQPQLS 368 PT++P + TK +L A+ + P A Q+ ++ + TA L Sbjct: 156 PTEKPTLFTKLTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLI 215 Query: 369 TPAAQTNPITAANLTATAATTASVPLHGLAVEIAASALNGKSRFEIRLDPAELGRIDVRI 428 TP T A +A + L+ I+ G+ E+RL P +LG + + + Sbjct: 216 TPHQTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISL 275 Query: 429 DVDRNGQVTSHLRVEKPETLAMLQQTAPQLQQALQDAGL---KSNNSGLQFSLRDQNSSG 485 VD N Q + A L+ P L+ L ++G+ +SN SG FS + Q +S Sbjct: 276 KVDDN-QAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQ 334 Query: 486 QNGGDYQQNGNSQRLIVTEDENVPVQLAGRSYG 518 Q N + VPV L GR G Sbjct: 335 QQQSQRTANHEPLAGEDDDTLPVPVSLQGRVTG 367
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 338 bits (869), Expect = e-112 Identities = 176/560 (31%), Positives = 269/560 (48%), Gaps = 56/560 (10%) Query: 5 LDFLKGLGAARLAAMVAVTAALVGFFGFVIMRVTAPQMTTLFTDLSMDDSSSIIKDLERQ 64 L++L L A ++ +A V +++ P TLF++LS D +I+ L + Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72 Query: 65 GIAFEIRNEGSVIMVPKDKVTRLRMKLAEGGLPKGGGVGYEIFDKSDALGTTSFVQNINH 124 I + N I VP DKV LR++LA+ GLPKGG VG+E+ D+ G + F + +N+ Sbjct: 73 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQE-KFGISQFSEQVNY 131 Query: 125 LRALEGELARTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVVRVRG--SLEANQIR 182 RALEGELARTI + V++ARVHL +P+ LF RE PSAS+ V + +L+ QI Sbjct: 132 QRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQIS 191 Query: 183 AIRHLVASAVNGLKPQRVSIVDEAGQLLA---DGTQTDIDQQVGDERRNAFEKRMRKQVE 239 A+ HLV+SAV GL P V++VD++G LL + D Q+ E R+++++E Sbjct: 192 AVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFAND--VESRIQRRIE 249 Query: 240 DIVSSVVGSGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREEQSATSE------- 292 I+S +VG+G Q++A DF QT + Y P G +++ R Q SE Sbjct: 250 AILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATL-RSRQLNISEQVGAGYP 308 Query: 293 -------SNGQVTVNNE----LPGNQQNQQ----------GQQPKDQSKKTEETNNYEIS 331 SN N P NQQN Q +S + ET+NYE+ Sbjct: 309 GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVD 368 Query: 332 RTTKTEVTEAGRVNRISVAVLVDGAYSKNEKGDLVYKERSKEELDRIAALVRSAIGFDQK 391 RT + G + R+SVAV+V+ + K + +++ +I L R A+GF K Sbjct: 369 RTIRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDK 424 Query: 392 RGDQVEVVNLKFAD----GPVVPQISEPTGFLGMLHFTKDDVMYVIELAVMMLLGIVVVF 447 RGD + VVN F+ G +P + + F + L V+++ I+ Sbjct: 425 RGDTLNVVNSPFSAVDNTGGELPFWQQQS-------FIDQLLAAGRWLLVLVVAWILWRK 477 Query: 448 MVVRPLVKKIISTEEIAAANAVPAITDETAQA-QAHAQQTAQLIDVAQVQGQVHAQSVHR 506 VRP + + EE AA + ET +A + + QL Q R Sbjct: 478 -AVRPQLTRR--VEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQR 534 Query: 507 VGELADRNPGEAAAIIRQWL 526 + E++D +P A +IRQW+ Sbjct: 535 IREMSDNDPRVVALVIRQWM 554
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 305 bits (782), Expect = e-104 Identities = 111/340 (32%), Positives = 196/340 (57%), Gaps = 2/340 (0%) Query: 24 RQAQREKTEPLSGPKRAAVMMLALGEQYGGKIWQQLDDDEVRELSLAMSTLGTVEADVVE 83 ++ + L+G ++AA++++++G + K+++ L +E+ L+ ++ L T+ +++ + Sbjct: 5 KEKEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKD 64 Query: 84 DLMLEFVSRMSASGALM-GNFDATERLLQQYLPPERVNGIMDEIRGPAGRNMWEKLSNVQ 142 +++LEF M A + G D LL++ L ++ I++ + +E + Sbjct: 65 NVLLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRAD 124 Query: 143 EEVLANYLKNEYPQTIAVVLSKLKPEHAARVLAILPEDMALDVIGRMLRMEAVQKEVIER 202 + N+++ E+PQTIA++LS L P+ A+ +L+ LP ++ +V R+ M+ EV+ Sbjct: 125 PANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVRE 184 Query: 203 VEQTLRTEFMSNLSQTRR-RDAHEVMAEIFNNFDRQTETRFITSLEEENRESAERIKALM 261 VE+ L + S S+ + + EI N DR+TE I SLEEE+ E AE IK M Sbjct: 185 VERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKM 244 Query: 262 FTFDDLIKLDSASAQTLLRNVDKDKLGVALKSANEEVRNFFFGNMSSRAAKMLQDDMAAM 321 F F+D++ LD S Q +LR +D +L ALKS + V+ F NMS RAA ML++DM + Sbjct: 245 FVFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFL 304 Query: 322 GPVRLRDVDEAQALLVNLAKDLAAKGEIMLSKNRADDELV 361 GP R +DV+E+Q +V+L + L +GEI++S+ +D LV Sbjct: 305 GPTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVLV 344
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 93.0 bits (231), Expect = 9e-28 Identities = 35/76 (46%), Positives = 55/76 (72%) Query: 36 ADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEV 95 D++ + D+PV+++ LGR++M + ELL+L G+V+ LD GE +DI +N L+A+GEV Sbjct: 52 QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111 Query: 96 VLVEDKLGVTMTEIIK 111 V+V DK GV +T+II Sbjct: 112 VVVADKYGVRITDIIT 127
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 423 bits (1089), Expect = e-147 Identities = 162/471 (34%), Positives = 244/471 (51%), Gaps = 37/471 (7%) Query: 2 RLLIVGTLKGQLTAATKIAMENGATVTHAEDNEQAMRVLRGGKGADLLLVDVAL---DIR 58 +L+ T + G V + R + G G DL++ DV + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMPDENAF 63 Query: 59 DLVMRLDAEHIHVPIVACGITSDARAAVAAIHAGAKEYIPLPPDPELIAAV--------- 109 DL+ R+ +P++ + A+ A GA +Y+P P D + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 110 -----LAAVANDSRDLVYRDDAMAKVIKLAQQIAGSDASVMITGESGTGKEVLARYVHTR 164 L + D LV R AM ++ ++ ++ +D ++MITGESGTGKE++AR +H Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183 Query: 165 SARAKRPFISINCAAIPEHLLESELFGHEKGAFTGAVARRIGKFEEANGGTLLLDEISEM 224 R PF++IN AAIP L+ESELFGHEKGAFTGA R G+FE+A GGTL LDEI +M Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 225 DVRLQSKLLRAIQERVIDRVGGTRPVAVDIRIIATSNRNLADAVREGTFREDLLFRLNVV 284 + Q++LLR +Q+ VGG P+ D+RI+A +N++L ++ +G FREDL +RLNVV Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303 Query: 285 NLKIPPLRERPADILELAQHFARKYSEANAVPLRPISAEAKRILTTNRWPGNVRELENTM 344 L++PPLR+R DI +L +HF ++ + R EA ++ + WPGNVRELEN + Sbjct: 304 PLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKR-FDQEALELMKAHPWPGNVRELENLV 362 Query: 345 HRAVLMAQGDEIGPDAILTPDGARLDIGKTQPAVA-----HATMAAEQVTR--------- 390 R + D I + I + + + A A + A E+ R Sbjct: 363 RRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDA 422 Query: 391 ----ALVGRTVADVERDLILETLKHCLGNRTHAANILGISIRTLRNKLNEY 437 L R +A++E LIL L GN+ AA++LG++ TLR K+ E Sbjct: 423 LPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 48.5 bits (115), Expect = 7e-08 Identities = 75/314 (23%), Positives = 110/314 (35%), Gaps = 58/314 (18%) Query: 43 GGVWARGVGGQVNISSSSQSAGTSTQGGAVFNTTSTNCSNVQKENFAGVQLGTDIARLNW 102 GG W RG + + + AG +LG D A + Sbjct: 647 GGAWGRGFAQRQQLD--------------------NRAGRRFDQKVAGFELGADHA-VAV 685 Query: 103 SGWNVHLGTTAGYLGAK---TTDNAGFSNNFEVPFFGAYVVATKGRFFADLMIRQEYY-- 157 +G HLG AGY T D G +++ V + Y+ F+ D +R Sbjct: 686 AGGRWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYI--ADSGFYLDATLRASRLEN 743 Query: 158 NINVNNAGFAFANQPIAAHGYSISASTGYNVDLGNDWFIEPSAGFIYSKTSVDSFTAPGV 217 + V + HG S G + WF+EP A + F A Sbjct: 744 DFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHADGWFLEPQA-------ELAVFRA--- 793 Query: 218 GGPNFTQIAGI-VRTNDVESEMGRLSLRGGRTIATSS-VVWQPFASVSVFHEFAGNVTSN 275 GG + G+ VR S +GRL L G+ I + QP+ SV EF G T Sbjct: 794 GGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGT-- 851 Query: 276 YTSLNGIFPAPGGAPFTYNQATTTTRVGTYGQYSVGVAGQIVNTGWLGFVRVDYRNGSRI 335 NGI A T GT + +G+A + L + +Y G ++ Sbjct: 852 -VHTNGI-------------AHRTELRGTRAELGLGMAAALGRGHSL-YASYEYSKGPKL 896 Query: 336 DG-WSGNAGVRYQF 348 W+ +AG RY + Sbjct: 897 AMPWTFHAGYRYSW 910
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 50.4 bits (120), Expect = 2e-08 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 6/169 (3%) Query: 368 PDAPLAITAQQRIDVLKRAIEEREEAARAAREAARQAVEDAKRKAEAEQAQLAAQKKREE 427 P I A R + A A E + AE + + +K E+ Sbjct: 997 ITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQ 1056 Query: 428 D--ERRARIAEAAEQAKAA--AAAAAAEKKRIDDERRAAAAEADRLAKAAEAERKAQLAR 483 D E A+ E A++AK+ A E + E + + E E KA++ Sbjct: 1057 DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV-- 1114 Query: 484 QQAEQAERDRAAAAAAAAKAAADKQAKEAEEARRVADLAAAKEAACKDQ 532 + + E + + + + ++ +AE AR KE + Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Score = 47.4 bits (112), Expect = 2e-07 Identities = 31/235 (13%), Positives = 61/235 (25%), Gaps = 27/235 (11%) Query: 305 YADLARAQLDAMNSQPQANIQV-----------------AAIPPASPETR--------DA 339 + +D N NIQ A +PP +P T + Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 340 PPTKDRIEWDKIKDSVDIPVLQRFIKRFPDAPLAITAQQRIDVLKRAIEEREEAARAARE 399 + + +D+ + Q Q +V + E +E +E Sbjct: 1044 SKQESKTVEKNEQDATE-TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 400 AARQAVEDAKRKAEAEQAQLAAQKKREEDERRARIAEAAEQAKAAAAAAAAEKKRIDDER 459 A E+ K K E E+ Q + + ++ + QA+ A + + Sbjct: 1103 TATVEKEE-KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 460 RAAAAEADRLAKAAEAERKAQLARQQAEQAERDRAAAAAAAAKAAADKQAKEAEE 514 A+ ++ AK + + + A Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216 Score = 35.4 bits (81), Expect = 0.001 Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 12/113 (10%) Query: 427 EDERRARIAEAAEQAKAAAAAAAAEKKRIDDERRAAAAEA--DRLAKAAEAERKAQLARQ 484 E E+R + + A ++E A EA A A +E +A Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 485 QAEQAERDRAAAAAAAAKAAADKQAKEAEEARRVADLAAAKEAACKDQQAQLD 537 ++++ ++ A E R A Q ++ Sbjct: 1044 SKQESK----------TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVA 1086
>PF06917#Periplasmic pectate lyase Length = 555 Score = 30.7 bits (69), Expect = 0.010 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 246 AWAAADDLIK-HVTDET-IASAQKIFARMDSVGQQRMSQLHGGRRDKLEISPNLWAGVGL 303 AW DDL K H + SAQ + R+D+ + L ++DKL P G Sbjct: 469 AWQIGDDLFKRHYHRGLFVESAQHRYFRIDNPIALALLTLIAAKQDKLAAIPQFITNGGY 528 Query: 304 VRGG 307 + G Sbjct: 529 IHGD 532
>PF05860#haemagglutination activity domain. Length = 117 Score = 56.4 bits (136), Expect = 2e-11 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Query: 65 VNQTSAKAIVNWNSFSVGSNASVNFAQPNADAAILNRVTGNTSSTIAGKITGNG--QVYL 122 Q + ++ FSV ++ + F P I++RVTG + S I G I N ++L Sbjct: 27 GTQAGSNLFHSFQEFSVPTSGTAFFNNPTNIQNIISRVTGGSVSNIDGLIRANATANLFL 86 Query: 123 VNPNGIAITPSGSVQVGGFVAST 145 +NPNGI + + +GG + Sbjct: 87 INPNGIIFGQNARLDIGGSFVGS 109
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 309 bits (792), Expect = 5e-98 Identities = 130/656 (19%), Positives = 256/656 (39%), Gaps = 45/656 (6%) Query: 14 IALVGPFQSGKTTLLEAILARTGAIPRAGSVDAGTCVGDASPEARHHKMSVAMTAATTTF 73 I ++ +GKTTL E++L +GAI GSVD GT D + R +++ + + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 74 MGDSYTFLDCPGSIEFAHDMRAALPAVDAAIVVCEADEKKLPQLQIILRELEELRIPRFL 133 +D PG ++F ++ +L +D AI++ A + Q +I+ L ++ IP Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIF 125 Query: 134 FLNKIDRANARIRETLATLQPASRVPLVLRQIPIWHGELIEGFVDLALERAFIYREHKAS 193 F+NKID+ + V + I + I ++ + Sbjct: 126 FINKIDQNGIDL-------------STVYQDIK-----------EKLSAEIVIKQKVELY 161 Query: 194 EVIALEGGDLDREKEARFSMLEKLADHDDALMEQLLEDIPPPRDAVFDDLARELREGLIC 253 + + + + + + +D L+E+ + + + + + Sbjct: 162 PNMCVTNFTESEQWDT-------VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLF 214 Query: 254 PVLLGSALRENGVLRLMKALRHEAPGIAETAQRLGVKASKEALGYVFKTLHLQHGGKLSL 313 PV GSA G+ L++ + ++ Q E G VFK + + +L+ Sbjct: 215 PVYHGSAKNNIGIDNLIEVITNKFYSSTHRGQ-------SELCGKVFKIEYSEKRQRLAY 267 Query: 314 TRVLAGHLDDGATLHAASGEAARVSGILAATGAYDSKRAAAEAGDTIALGKLDTVKTGDT 373 R+ +G L ++ + E +++ + + K A +G+ I + + + +K Sbjct: 268 IRLYSGVLHLRDSVRISEKEKIKITEMYTSINGELCKIDKAYSGE-IVILQNEFLKLNSV 326 Query: 374 IATGKAAPPALAKIAPCPPVLALSIAAVDRKDDVKLGQALLRLNEEDPSLTMVQNQRTHD 433 + K P P P+L ++ + L ALL +++ DP L + TH+ Sbjct: 327 LGDTKLLPQRERIENP-LPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHE 385 Query: 434 TVLWGQGEMHLRVALERLRDRFGVNVKSHAPAIGYQETIRKSITQRGRHKKQSGGHGQFG 493 +L G++ + V L++++ V ++ P + Y E K + + + Sbjct: 386 IILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERPLK--KAEYTIHIEVPPNPFWA 443 Query: 494 DVVLDIRPLPRGEGFRFAEKVVGGAVPRNYIPAVEEGVVDALARGPLGFPVIDVEVTLTD 553 + L + PLP G G ++ V G + +++ AV EG+ +G G+ V D ++ Sbjct: 444 SIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKY 503 Query: 554 GSYHSVDSSDLAFRTAARAGVGEGLPQCAPVLLEPIHTVEIVCPTDATARINAILAARRG 613 G Y+S S+ FR A + + L + LLEP + +I P + +R Sbjct: 504 GLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCA 563 Query: 614 QILSFDTRDGWPGWDCVRAMMPEAEIGELIVELRSATAGAGSFTRTFDHMAEVTGR 669 I+ ++ + +P I E +L T G TG Sbjct: 564 NIVDTQLKNNEV---ILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGE 616
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 41.9 bits (98), Expect = 3e-07 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 1 MIRTKGLAGLKTRDLAQEIGVANGAVYNLVADVDELVLMVGSRTLARLDAELSQAESAGP 60 + +G++ ++A+ GV GA+Y D +L + + + + + ++ P Sbjct: 23 LFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFP 82 Query: 61 PDSEGALVRIAIAYCDFAAHNLELWRALFEHRMPPEKPLPDWAIADQM 108 D L I I + E R L E + + + A+ Q Sbjct: 83 GDPLSVLREILIHVLESTVTE-ERRRLLMEIIFHKCEFVGEMAVVQQA 129
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 0.028 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 12/96 (12%) Query: 309 AIWTTSFAAIGLALRFMAGFSPARRYLADASYWLYLIHLPIVMALQVAVS--------QL 360 W G+ GF+ L + +I + + + ++ + Sbjct: 11 YYWYCQGIGWGVYTLTGFGFA----SLYGSPKLHSMIFNIAISLMGLVLTHAYRSFIKRQ 66 Query: 361 DWPWPAKYALILLVAMPTMLASYHWLVRDTVLGRML 396 W +IL V ++ W V +T + R+L Sbjct: 67 GWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLL 102
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 40.9 bits (96), Expect = 9e-06 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 10/72 (13%) Query: 1 MSLFIRGGTVVNHDHSRRADVLIQSGTIVAVGTAIEPPL----------SAEVIDADGCY 50 + I +++H +AD+ ++ G I A+G A P + EVI +G Sbjct: 68 VDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKI 127 Query: 51 VLPGGIDPHTHL 62 V GG+D H H Sbjct: 128 VTAGGMDSHIHF 139
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 144 bits (366), Expect = 8e-43 Identities = 79/345 (22%), Positives = 121/345 (35%), Gaps = 72/345 (20%) Query: 7 ILIAGGAGYIGAHCSKAVAEAGFTPVVYDNLTT--------------GHRGFVQWGPLMV 52 L+ G AG+IG H SK + EAG V DNL GF Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQ----FHK 58 Query: 53 GDIADSIKIASTIRQYDVKAVMHFAAWSAVGESVADPQKYYLNNVAGTLGLLQGMREAGC 112 D+AD + + V AV S+ +P Y +N+ G L +L+G R Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 113 TRLVFSSTGAVYGNAGREPIPESAAGPT---VNPYGRSKYMIEQILADYRAAYGFSATAL 169 L+++S+ +VYG +P S V+ Y +K E + Y YG AT L Sbjct: 119 QHLLYASSSSVYG--LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL 176 Query: 170 RYFNACGADASGTIGELRDPETHLIPRALMAILGHVPDFAIFG-----TDYETP----DG 220 R+F G P PD A+F + ++ G Sbjct: 177 RFFTVYG------------------PWGR-------PDMALFKFTKAMLEGKSIDVYNYG 211 Query: 221 TAVRDYIHVDDLAAAHIAALGRLLE------GGAGGA---------YNLGTGSGYSVREI 265 RD+ ++DD+A A I + G YN+G S + + Sbjct: 212 KMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDY 271 Query: 266 VDAIRNETGEQVPLVYRERRAGDPPILVADPTRAEQELGFKARRS 310 + A+ + G + + GD AD + +GF + Sbjct: 272 IQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETT 316
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 106 bits (267), Expect = 1e-27 Identities = 64/344 (18%), Positives = 121/344 (35%), Gaps = 41/344 (11%) Query: 51 RWDAWTGNATTQSTNDAYVRADLTQL---SSRVAGEVLKVAVSDF-----------QQVK 96 + A A T T + ++A L Q + E+ K+ ++V Sbjct: 126 KLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVL 185 Query: 97 AGDILIQIDPADYEAQVAQAEANVAAAQAALDNLGNQIELQYATIAQAEAQQ------VS 150 LI+ + ++ Q Q E N+ +A + +I +++ + Sbjct: 186 RLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLH 245 Query: 151 AGAAEVQARQEEERQQS-LSQTEAGTRQRLEQATAAYAKAQADVRASRAVIAAQRHQLEV 209 A A E+E + + +LEQ + A+ + + + Q + E+ Sbjct: 246 KQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ-----LVTQLFKNEI 300 Query: 210 LTGTKTQRGADLAGAKAALAAARLKLGYTKITAPFDGVVGQRQVQT-GDYVNIGSSLIAV 268 L Q ++ LA + + I AP V Q +V T G V +L+ + Sbjct: 301 LD-KLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVI 359 Query: 269 VPLPQVFII-ANYKETQLTHVAPGQPVDVTVDSFPGEK---LHGRVERIAPASGSQFALL 324 VP + A + + + GQ + V++FP + L G+V+ I + Sbjct: 360 VPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA------- 412 Query: 325 PPDNATGNFTKVVQRIPVRIALDADQPLLARLLPGMSVVTHIRT 368 D G V+ I ++ + L GM+V I+T Sbjct: 413 IEDQRLGLVFNVIISIEENCLSTGNKNI--PLSSGMAVTAEIKT 454
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 51.4 bits (123), Expect = 6e-09 Identities = 64/408 (15%), Positives = 147/408 (36%), Gaps = 26/408 (6%) Query: 39 SFLANFDSRLTSVGLPDLRGAFGLGFDQGAWLSTA-----AIGSQIFIAPAVAWLATAFG 93 SF + + + +V LPD+ F W++TA +IG+ ++ L+ G Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGK-----LSDQLG 77 Query: 94 LRRVLGVPSLIYAAVSLIIPFVRDYPTLITLAIIHGMLLGTFVPATLMIVF-RNLPIRWW 152 ++R+L +I S+I + +L+ +A PA +M+V R +P Sbjct: 78 IKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENR 137 Query: 153 LPAISIYSIRVGVALDTSTSLVGFYVEHLGWQWLYWQGVVLAPLMALMVYLGTPSEPVNR 212 A + V + ++ G ++ W +L ++ + ++ L + Sbjct: 138 GKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKG 197 Query: 213 TLLENADWGGMLLLGSAVSMIYAGLDQGNRLDWLQSGTVVALLAGGAVLFVLFLVNEALA 272 D G++L+ + + L + F++F+ + Sbjct: 198 HF----DIKGIILMSVGIVFFMLFTTSYSIS----------FLIVSVLSFLIFVKHIRKV 243 Query: 273 PQPWAHVNVLLSRNIGLSLAVILLYTLTSLSNASLVPNFLATITQLRPEQSGSLLLLYGA 332 P+ + + + + + T S+VP + + QL + GS+++ G Sbjct: 244 TDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGT 303 Query: 333 LPMLVLVPLSIAMLRHLDPRIVVVFGLSAFAAANLMGTQLTHAWAREDFIVIVVLQSIGQ 392 + +++ + ++ P V+ G F + + + +I+V G Sbjct: 304 MSVIIFGYIGGILVDRRGPLYVLNIG-VTFLSVSFLTASFLLETTSWFMTIIIVFVLGGL 362 Query: 393 ALTLLPIIILALSNSDPARATSFAAYIQIMRLGGAEIGVALMGTWLRV 440 + T I + S+ A + + + G+A++G L + Sbjct: 363 SFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.1 bits (127), Expect = 5e-11 Identities = 24/188 (12%), Positives = 53/188 (28%), Gaps = 5/188 (2%) Query: 10 DRDTALEQAMEVFWRHGYEGATIAQLTDAMGINPPSLYAAFGSKEALLKAALDRYTARRE 69 R L+ A+ +F + G ++ ++ A G+ ++Y F K L + + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 70 AWMEEVLSAPTAREVTARMLMGVAEKQTDPSNPPGCLLVQGGLACGSGSSNVPFELAARR 129 E A + + + + L+ + + + Sbjct: 72 ELELE-YQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 130 AQTEEQLRHRF----ERAKEERDLAATADPAALARYVSAVITGMSVMASSGADREALAQV 185 + R + E + L A A + I+G+ L + Sbjct: 131 RNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKE 190 Query: 186 AAVAVKAI 193 A V + Sbjct: 191 ARDYVAIL 198
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.0 bits (109), Expect = 2e-07 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 10/97 (10%) Query: 120 AEVDRAQAQLEAARARAAFAASELERGAQLVGNSIVTKRDYDQRDNGNREAIANVKAAEA 179 E+ ++QLE + A E + QL N I+ K R+ N+ Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKL---------RQTTDNIGLLTL 316 Query: 180 ALQAAKLNLDYTQVRAPVDGRVGRIEV-TVGNLVAAG 215 L + + +RAPV +V +++V T G +V Sbjct: 317 ELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353 Score = 43.3 bits (102), Expect = 1e-06 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 5/129 (3%) Query: 82 RVEVRPRVAGAILATNFTEGSLVKAGDVLFKIDPAPYAAEVDRAQAQLEAARARAAFAAS 141 E++P + EG V+ GDVL K+ A+ + Q+ L AR Sbjct: 96 SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQI 155 Query: 142 ELERGAQLVGNSIVTKRDYDQRDNGNREAIANVKAAEAAL-----QAAKLNLDYTQVRAP 196 + + ++ E + + Q + L+ + RA Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAE 215 Query: 197 VDGRVGRIE 205 + RI Sbjct: 216 RLTVLARIN 224
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1069 bits (2767), Expect = 0.0 Identities = 419/1042 (40%), Positives = 654/1042 (62%), Gaps = 16/1042 (1%) Query: 3 LSKFFIDRPIFAGVLSTLIFLGGLIALFSMPISEYPDVVPPSVVVRATYPGANPKVIAET 62 ++ FFI RPIFA VL+ ++ + G +A+ +P+++YP + PP+V V A YPGA+ + + +T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VATPIEEQINGVENMLYMSSQATTDGAMTLTVTFKLGTDPDKATQLVQNRVQQAEPRLPN 122 V IE+ +NG++N++YMSS + + G++T+T+TF+ GTDPD A VQN++Q A P LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 123 VVRQLGVITKKSSPDLTMVVHLISPNGRYDTTYLRNYAVLNVKDRLARIDGVGDVQLFGA 182 V+Q G+ +KSS MV +S N + +Y NVKD L+R++GVGDVQLFG Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 183 GDYSMRVWVDPQKAAEHGLSASDIVKAIQAQNVEAAAGVVGASPSVKGLDLQLSVNAEGR 242 Y+MR+W+D ++ L+ D++ ++ QN + AAG +G +P++ G L S+ A+ R Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 243 LSNEDQFADIVVKTGAHGEVTRLRDVARIELGASEYGLRSLLDNKQAVAIPIFQAPGSNA 302 N ++F + ++ + G V RL+DVAR+ELG Y + + ++ K A + I A G+NA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 303 LQISDNVRATMAEIKKTMPEGVEYHIVYDPTQFVRSSIEAVVHTLFEAIVLVVIVVILFL 362 L + ++A +AE++ P+G++ YD T FV+ SI VV TLFEAI+LV +V+ LFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 363 QTWRASIIPLLAVPVSIVGTFAVMHLFGFSINALSLFGLVLAIGIVVDDAIVVVENVER- 421 Q RA++IP +AVPV ++GTFA++ FG+SIN L++FG+VLAIG++VDDAIVVVENVER Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 422 NIESGLSPRDATYQAMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYKQFALTIAISTV 481 +E L P++AT ++M ++ G ++ IA+VL AVF+P+AF G TG Y+QF++TI + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 482 ISAVNSLTLSPALSALLLKGHHDPKDRLTRILDRSLGWFFRGFNRAFVRASDNYSGSVSR 541 +S + +L L+PAL A LLK ++ + G FF FN F + ++Y+ SV + Sbjct: 480 LSVLVALILTPALCATLLKP-------VSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGK 532 Query: 542 VISGKAAVMMLYVLLIGATGFLFKQVPGGFVPGQDKQYLVGFARLPDGATLDRSEEVIRK 601 ++ +++Y L++ LF ++P F+P +D+ + +LP GAT +R+++V+ + Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 602 MSDIALT--QPGVESSIAFPGLSISGFTNSSNAGIVFSGLKPFDERKDPSLSGGAIALQL 659 ++D L + VES G S SG + NAG+ F LKP++ER S A+ + Sbjct: 593 VTDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAVIHRA 650 Query: 660 NKKYAGIQDAFIAMFPPPPVNGLGTIGGFKLQIEDRAGRGYDALNDVTTAFMGALQKSP- 718 + I+D F+ F P + LGT GF ++ D+AG G+DAL +G + P Sbjct: 651 KMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 719 EIAGAFSSFQVNVPQLFADIDRTKALQLGVPVTEVFNTLQIYLGSYYVNDFNKFGRTYSV 778 + + + Q ++D+ KA LGV ++++ T+ LG YVNDF GR + Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 779 RVQADAPFRARADDIRQLKVRSASGDMVPLSALLNVRQSAGPERAIRYNGFLSADINAAA 838 VQADA FR +D+ +L VRSA+G+MVP SA G R RYNG S +I A Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA 830 Query: 839 APGFSSGQAQAAAERIAAEVLPPGFAFEWTDLTYQEFIAGNSGLWVFPLAILLVFLVLAA 898 APG SSG A A E +A++ LP G ++WT ++YQE ++GN + ++ ++VFL LAA Sbjct: 831 APGTSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 899 LYESLTLPLAILMIVPMALLAAMAGVYISKGDNNIFTQIGLIVLVGLSAKNAILIVEFAR 958 LYES ++P++++++VP+ ++ + + N+++ +GL+ +GLSAKNAILIVEFA+ Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 959 EL-EFAGRTPLRAAIEASRLRLRPILMTSMAFIMGVLPLVLSTGAGSEMRRAMGVAVFSG 1017 +L E G+ + A + A R+RLRPILMTS+AFI+GVLPL +S GAGS + A+G+ V G Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 1018 MIGVTVFGLFLTPVFYVLLRTL 1039 M+ T+ +F PVF+V++R Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRC 1031
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.043 Identities = 10/30 (33%), Positives = 16/30 (53%) Query: 36 LLGPSGSGKTTLLMMLAGFEQPTSGTIEVG 65 L G G GK+TL+ L G + + ++G Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDIG 630
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 29.8 bits (67), Expect = 0.012 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 13/90 (14%) Query: 192 ALDAAGADIAGAIEII------------GATPVASAAAKGAASAMLSGRFAPLFPVELVA 239 ALDA G G E G P++ +G S + + L Sbjct: 8 ALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKIRLST 67 Query: 240 KDLAYV-RQLGTPVAAGMPMTTAAAGVMQS 268 DLA + RQL T VAA MP+ A V + Sbjct: 68 SDLALLTRQLATLVAASMPLEEALDAVAKQ 97
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 596 bits (1537), Expect = 0.0 Identities = 243/1044 (23%), Positives = 438/1044 (41%), Gaps = 41/1044 (3%) Query: 24 FAIRFRGVVLALACTILGYGVVSLGSARYGVFPDFAPPQVSIQTEAPGLSPEQVEVLVTQ 83 F IR LA ++ G +++ +P APP VS+ PG + V+ VTQ Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63 Query: 84 AIETSINGLPGIESMRSSSIQ-GLSVISVIFQAGTDVFTARQLVTERLAVIASNLPQGVR 142 IE ++NG+ + M S+S G I++ FQ+GTD A+ V +L + LPQ V+ Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123 Query: 143 APSMTPLVPAAGTVLAIGLTSE--QRSLMDLRTIADWTVSRRLLAVPGVAQVTTYGRDIR 200 ++ ++ ++ G S+ + D+ V L + GV V +G Sbjct: 124 QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ-Y 182 Query: 201 SLQVQVRSDDLVRFGLGMNDVLAAARKATGVRGAGFVDTA------NQRVILQTQGQSLT 254 ++++ + +D L ++ L DV+ + AG + + Q + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 255 PEQLARTVLLHQA-GASVVLGDVATVVNAPEPPIGGALINGQPGVMMMISQQYGANTRNV 313 PE+ + L + G+ V L DVA V E A ING+P + I GAN + Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 314 AARVEAALQELRPALESDKVRLHADLFRPATFIDTAIENVLFALSIGAALVVIVLFLFLY 373 A ++A L EL+P L+ + F+ +I V+ L LV +V++LFL Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYP--YDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 374 DWRTSVISCTAIPLSLFSAVLVLQWMGQSLDTMTLGGLAIAIGEVVDDAVIGVENVVRRL 433 + R ++I A+P+ L +L G S++T+T+ G+ +AIG +VDDA++ VENV R + Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 434 RENRALPLPRPEARVVYDAMLEVRSAVAYATFAVLLVFVPILALPGLAGRLFGPLGIAYI 493 E++ P +M +++ A+ + VF+P+ G G ++ I + Sbjct: 421 MEDKLPPK-----EATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 494 LAVVASLIVALTVTPALSMMLLAGRKPRASREP--------PLVRWSRRYYERLLRGLSR 545 A+ S++VAL +TPAL LL S +Y + + Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILG 535 Query: 546 FPKLVTTAALLVTIGGAALVPLFGGTFLPDLKEGHLILHVSTLPGTSLDESLRLGTLIAA 605 L+ G L +FLP+ +G + + G + + + ++ + Sbjct: 536 STGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTD 595 Query: 606 AL--REVPEVRSVAQHAGRAEAGVDTAGTHSSEIEVDLKPGLSGDAQERAEQNIRAALAN 663 E V SV G + +G ++ V LKP + E + + + Sbjct: 596 YYLKNEKANVESVFTVNGFSFSG---QAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKM 652 Query: 664 -FAGINLS-IKTYLTERIEE--TLSGFNAAVVINVFGPDLDDLERAANDIARELGEVWGA 719 I + + I E T +GF+ +I+ G D L +A N + + + Sbjct: 653 ELGKIRDGFVIPFNMPAIVELGTATGFDFE-LIDQAGLGHDALTQARNQLLGMAAQHPAS 711 Query: 720 -IDIQQQSPPGMPQVNVTLRPTDLQSWGLDAVEVLELIRTAYQGDVVGQAYEGNVVFNVI 778 + ++ Q + + Q+ G+ ++ + I TA G V + V + Sbjct: 712 LVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLY 771 Query: 779 VKLDPDASARPTEIGNMPIRTPSGAYILLKQVADVYGTAGRYVVLHRNGQRVQTVTANVG 838 V+ D P ++ + +R+ +G + + G + NG + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 839 ERDLESFVAAAKRKIAKEVKLPAGAHVEFTGAAEAQAKSRRDLLVNALLATIGIVLLLSL 898 A +A KLPAG ++TG + + S ++ + + L L+ Sbjct: 832 PGTSSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 899 VTGHWRNLVLVLINLPFAFVGGVIAVALTGSVLSLGSMVGFVTLFGIALRNSILMISHYE 958 + W V V++ +P VG ++A L + MVG +T G++ +N+IL++ + Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 959 HLVSKEGRCWGLETAIAGAADRLVPILMTSLVTGLGLLPLALGAGEPGREIEGPMAIVIL 1018 L+ KEG+ +E + RL PILMTSL LG+LPLA+ G G + + I ++ Sbjct: 950 DLMEKEGKG-VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG-AGSGAQNAVGIGVM 1007 Query: 1019 GGLLTSMVLNLLVLPTLALRFGRF 1042 GG++++ +L + +P + R Sbjct: 1008 GGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.1 bits (73), Expect = 0.003 Identities = 19/140 (13%), Positives = 46/140 (32%), Gaps = 12/140 (8%) Query: 20 ILLTLIGSSWTGVARAETAGREPATVKLSATQQKQIGLQTAVLSA-ESHPEQFRAYGTVL 78 + +I + + + E + S ++ ++ +++ + G VL Sbjct: 65 MGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVL 124 Query: 79 DVARLTELTNNYANAQAQLQTAQAKLDVARLAFERARDLVQSAAMPRKEAEAAEGTFRTD 138 +LT L + Q QA+L+ R Q + + + E + Sbjct: 125 --LKLTALGAEADTLKTQSSLLQARLEQTRY---------QILSRSIELNKLPELKLPDE 173 Query: 139 QAALAAAESQVKTLMATARQ 158 +E +V L + ++ Sbjct: 174 PYFQNVSEEEVLRLTSLIKE 193 Score = 31.3 bits (71), Expect = 0.005 Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 16/111 (14%) Query: 81 ARLTELTNNYANAQAQLQTAQAKLDVARLAFERARD-------LVQSAAMPRKEAEAAEG 133 + + N +A+ T A+++ + L+ A+ + E Sbjct: 200 NQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQEN 259 Query: 134 TFRTDQAALAAAESQVKTLMATARQEWGAVIGRGIIERSPQVVQLIEREQL 184 + L +SQ++ + + E V QL + E L Sbjct: 260 KYVEAVNELRVYKSQLEQIESEILS---------AKEEYQLVTQLFKNEIL 301
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.6 bits (97), Expect = 4e-05 Identities = 53/292 (18%), Positives = 86/292 (29%), Gaps = 36/292 (12%) Query: 1182 NPATRADGNHRSRSDAKTPNKAPDKAPNKAHNKTARGLPPALRSLLQPDASLRDLAEILF 1241 NP ++ TPN P+ N R P Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIA-----RVDEAPVPPPAPATP--- 1033 Query: 1242 PERIIALRARPVAGAAVSVAAPVLFETTRSAEPKVPPQAVVATPKRPASRNATHTLE--E 1299 + VA + + V + E VA + + T T E + Sbjct: 1034 -----SETTETVAENSKQESKTVEKNEQDATETT-AQNREVAKEAKSNVKANTQTNEVAQ 1087 Query: 1300 EIATVAKYLSMARRSGADVGAIATRDQTRSDSRTAAPKPSPELRLLRRRPAPAPKPMAEP 1359 + + + + A V + + ++ PK + ++ + + +P AEP Sbjct: 1088 SGSETKETQTTETKETATVEK-EEKAKVETEKTQEVPKVTSQVSPKQEQSE-TVQPQAEP 1145 Query: 1360 KPEPEVVAALVVP------PALPEQPA------VVAPVGADQLAAGPIAPVEVPPIVIEK 1407 E + + P A EQPA V PV + VE P Sbjct: 1146 ARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENP--ENTT 1203 Query: 1408 PAQIAPVGTEEKSVLVAEQADRA-NASSANAEPAKPIAAMTPAPSTVAAEEI 1458 PA P E S + R+ + N EPA + STVA ++ Sbjct: 1204 PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA---TTSSNDRSTVALCDL 1252 Score = 34.7 bits (79), Expect = 0.005 Identities = 40/235 (17%), Positives = 68/235 (28%), Gaps = 25/235 (10%) Query: 1413 PVGTEEKSVLVAEQADRANASSANAEPAKP--IAAMTPAPSTVA------AEEIKIHASL 1464 V T + QAD + S N E A+ PAP+T + AE K + Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 1465 IEMAFKAAETPTLPRRRLPSRRVMTVAAAGLLAIVAVSWERASQW--------------- 1509 +E + A T R + V A VA S + Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 1510 -VQVPLSDATAASTLPSEPAPRKVNAERIMPDGKPVASAAADEHATVGMSVPVSTPAQAY 1568 +V + S+ +P++ +E + P +P + S +T Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170 Query: 1569 LYHEDPQDPKGKRFPGKVTWSL-EPSKGPRADASAAIKGEIEIENGAKVTIALRR 1622 E + + + + P A + + E+ K RR Sbjct: 1171 PAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRR 1225
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 31.1 bits (70), Expect = 0.009 Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 2/100 (2%) Query: 190 GLAASSSAPRDALSAPPTSPRRILSESAATPPGGQQVQSTFVPPRPAAGADMASVPAE-- 247 GL +S L AP + A P P + P + Sbjct: 31 GLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEA 90 Query: 248 PVAAPRPAPEPEPKLRVPELIAVAGGNFAMGGDDESEQPV 287 PV +P P+P+PK + + + + + Sbjct: 91 PVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFE 130
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.6 bits (66), Expect = 0.010 Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 1/58 (1%) Query: 187 LPQPTTPASRPADAAKIKPQPAPVTADENVSVVPDFPPLRAAPPVAPKPAAPAPMPRA 244 L P P + +P+P P + + P PKP P+ Sbjct: 60 LEPPQAVQPPPEPVVEPEPEPEP-IPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKR 116 Score = 28.4 bits (63), Expect = 0.022 Identities = 14/57 (24%), Positives = 22/57 (38%) Query: 184 AQRLPQPTTPASRPADAAKIKPQPAPVTADENVSVVPDFPPLRAAPPVAPKPAAPAP 240 + P+P P +A + +P P + V P R PV +PA+P Sbjct: 74 VEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFE 130
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 59.2 bits (143), Expect = 1e-12 Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 22/224 (9%) Query: 43 GGLGAAGAEFALEMASPQVEDNDLPPGPD--SDAAEAAPEQMQQTAE-VKESDAVKDKPT 99 G AG + ++ P + A P+ +Q E V E + + Sbjct: 25 HGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIP 84 Query: 100 ETEEEADRVVTQNEPKKPEKEEQQQAQQQAE-----ASVASAAQQESARKALDEAAPPAE 154 E +EA V+ + +PK K + + +Q + A+ E+ A ++ Sbjct: 85 EPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATA 144 Query: 155 TAKAPNVGLGKDRQKLTDNWGRKISAYFELHKRYPEGKKHN---GTVKVALVLSRAGKVM 211 P + + L+ N +YP + G VKV ++ G+V Sbjct: 145 ATSKPVTSVASGPRALSRN-----------QPQYPARAQALRIEGQVKVKFDVTPDGRVD 193 Query: 212 SASVMQSCGDPMFDDAALAMIRRSDPVPAPPAGLTDDQFSFSLD 255 + ++ + MF+ +RR P P F ++ Sbjct: 194 NVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKIN 237
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 62.9 bits (153), Expect = 2e-14 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 4/153 (2%) Query: 14 RVTDSIASICIIVLLLACAGLIWTDLREGLLPDWMNALVAASGLVRTVVLTDLPQALWD- 72 + ++ ++L L + DL + LLPD + + GL+ L +L D Sbjct: 127 TLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLL--FNLLGGFVSLGDA 184 Query: 73 IAAALAVGAALLLLRRLYLIARGRQGLGLGDVKFLMAATLWAGLPGLPILLLIATMTALV 132 + A+A L L + + G++G+G GD K L A W G LPI+LL++++ Sbjct: 185 VIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAF 244 Query: 133 AVLFLRMRGQSMTGETALPFGPFLVIGLLSVLV 165 + L + +PFGP+L I L+ Sbjct: 245 MGIGLILLRNH-HQSKPIPFGPYLAIAGWIALL 276
>PilS_PF08805#PilS N terminal Length = 185 Score = 31.1 bits (70), Expect = 0.003 Identities = 6/34 (17%), Positives = 16/34 (47%) Query: 1 MSNRSGRAYEAGFALIEALGALAIAGIVLSALLA 34 +S R + + G L+E L + + ++ ++ Sbjct: 16 LSARRKKEQDKGATLMEVLLVVGVIVVLAASAYK 49
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 27.6 bits (61), Expect = 0.014 Identities = 9/25 (36%), Positives = 18/25 (72%) Query: 9 LREAGFTLIEVLVALAVVSVSIVAI 33 +R+ GFTL+E+++ L ++ VS + Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMV 25
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 41.4 bits (97), Expect = 2e-07 Identities = 19/47 (40%), Positives = 27/47 (57%) Query: 5 RQRGFTLLEMVCVLAIIAMLASVALPYLPRQTSRPRLQAYALQAVTL 51 +QRGFTLLE++ V+ II +LAS+ +P L + Q V L Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVAL 52
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 134 bits (338), Expect = 4e-43 Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 6/133 (4%) Query: 14 RRESERGFTLVEMLVVITIIGLIMGLIGPRVLNYLSESKTKAARIQLQSFSSALDLFYLD 73 + +RGFTL+E++VVI IIG++ L+ P ++ ++ + A + + +ALD++ LD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 74 VGRYPSTSEGLAALAQRPAG----LNTWNGPYLKGGAVPKDPWNAAYVYRAPGDHGPFDI 129 YP+T++GL +L + P N Y+K +P DPW YV PG+HG +D+ Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIK--RLPADPWGNDYVLVNPGEHGAYDL 120 Query: 130 LSYGADGQEGGTG 142 LS G DG+ G Sbjct: 121 LSAGPDGEMGTED 133
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 245 bits (626), Expect = 1e-79 Identities = 120/406 (29%), Positives = 191/406 (47%), Gaps = 5/406 (1%) Query: 1 MPSYRYRALTQSGEIVVGSLDAPSRGEVERRISYLQLLPIETVEEKARTA--SSAGLSFG 58 M Y Y+AL G+ G+ +A S + + + L+P+ E + S GLS Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 59 GP---SAVDVTTFTRDLALLLKAGARLDDALDLLSNDSDIGRLRPVVARLRAAIMSGESF 115 S D+ TR LA L+ A L++ALD ++ S+ L ++A +R+ +M G S Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 116 ADAAAAQPLLFSPMYVALMRVGEASGTLDQVLTALAGERERSEATRRKLTDAMQYPAFVF 175 ADA P F +Y A++ GE SG LD VL LA E+ + R ++ AM YP + Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 176 LAAIGVMLFFLVAVLPNFSAVLRDFGGRADTALGFFMSLSDILRDNAAVITLGCAALLVA 235 + AI V+ L V+P + M +SD +R + L A +A Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 236 GWWLLRQANVRAALTSGLAVLPGIGGILTFYRTSLFCRNLGLLLGCGVTLSAALRILVDV 295 +LRQ R + L LP IG I T+ + R L +L V L A+RI DV Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 296 MAVTSSRAPWSAAADRVRHGGKLSQALSADDMLPPMALRMLRLGEETGQLPTLSTRIAEF 355 M+ +R S A D VR G L +AL + PPM M+ GE +G+L ++ R A+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 356 YEAKLQRALDRVVGIVGPAAILLISVVVGGLIVSIMTALLSVTQLV 401 + + + +G+ P ++ ++ VV ++++I+ +L + L+ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 212 bits (540), Expect = 3e-61 Identities = 129/496 (26%), Positives = 227/496 (45%), Gaps = 24/496 (4%) Query: 266 VFPVSNSAPEPIVAELEKIMDTGENGLSQNLVKLQVVNRLNAIMVVTRKPALLQSAATWI 325 V P++N A + L ++ D G ++V + N L ++T + A+++ T + Sbjct: 131 VVPLTNVAARDLAPLLRQLNDNAGVG---SVVHYEPSNVL----LMTGRAAVIKRLLTIV 183 Query: 326 RRLDQADSGRNSVHVYRIRYGDARQLAKLLTDMFGGAGSSSTDSTDNQTAPGSDGTTTSV 385 R+D A G SV + + A + KL+T++ S+ + + T + Sbjct: 184 ERVDNA--GDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVL 241 Query: 386 ADRLSFNTNAGNSTNSSANPLSRTQGAGG-----LSGMQSSSPSSSSSTPSSTGLEPRSG 440 +S N+ + L R Q G +S T S+ ++ Sbjct: 242 ---VSGEPNSRQRIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQ 298 Query: 441 GAGGGQPLMPNVRITPDTVNNSLVIYADRESYRIISSTLQQLDQPVLQVGIDATIAEVTL 500 A L N+ I N+L++ A + + + QLD QV ++A IAEV Sbjct: 299 AAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQD 358 Query: 501 TNELSYGVQAYLSSKVLGLGTDRGSITNTQTTSVATATTAAATTALINRALPGFNFLIGH 560 + L+ G+Q + + T+ G +T ++ + AL FN + Sbjct: 359 ADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAG 418 Query: 561 EASPN--MILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGSATVLSSSNTVV 618 N M+L AL + T +L+ PS+V ++N AT VG VPV TGS T +S + + Sbjct: 419 FYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQT--TSGDNIF 476 Query: 619 NTIDYRNTGIILRVVPRIAANGNVRLEVEQEISNV---AAQTAASLTPTVSQRKVKSAIS 675 NT++ + GI L+V P+I +V LE+EQE+S+V A+ T++ L T + R V +A+ Sbjct: 477 NTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVL 536 Query: 676 VANGQTVLLAGLISEQQTGNRNGIPGFDEIPILGDTFSHQDKKGTRTELIIFIRPQIIRD 735 V +G+TV++ GL+ + + + +P +IP++G F KK ++ L++FIRP +IRD Sbjct: 537 VGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRD 596 Query: 736 GSDAHQVAEELRSKLR 751 + Q + + Sbjct: 597 RDEYRQASSGQYTAFN 612 Score = 94.2 bits (234), Expect = 4e-22 Identities = 68/303 (22%), Positives = 124/303 (40%), Gaps = 21/303 (6%) Query: 102 YDLNFENTPIAQVAKVVIGDILGAGYSIDPRVQGSVSLVSARPVPKSDILFVLESALRLS 161 + +F+ T I + V L IDP V+G++++ S + + S L + Sbjct: 30 FSASFKGTDIQEFINTV-SKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLDVY 88 Query: 162 GVVLVREGGG--YKLTPLGDAIGAGRVDGEAARAEPGYGVS-VVPLQYVGAQTILKLMDS 218 G ++ G + A V +AA V+ VVPL V A+ + L+ Sbjct: 89 GFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPLLRQ 148 Query: 219 FATRA--GSVRADPTRNLLLIQGTGPERRSAIETALSF--DVDWMRGQSVGVFPVSNSAP 274 A GSV N+LL+ G R + I+ L+ VD +SV P+S ++ Sbjct: 149 LNDNAGVGSVVHYEPSNVLLMTG----RAAVIKRLLTIVERVDNAGDRSVVTVPLSWASA 204 Query: 275 EPIVAELEKI--MDTGENGLSQNLVKLQVVNRLNAIMVVTRKPALLQSAATWIRRLDQAD 332 +V + ++ + + + R NA+ +V+ +P Q I++LD+ Sbjct: 205 ADVVKLVTELNKDTSKSALPGSMVANVVADERTNAV-LVSGEPNSRQRIIAMIKQLDRQQ 263 Query: 333 SGRNSVHVYRIRYGDARQLAKLLTDMFGGAGSSSTDSTDNQTAPGSDGTTTSVADRLSFN 392 + + + V ++Y A L ++LT + SST ++ Q A ++ + Sbjct: 264 ATQGNTKVIYLKYAKASDLVEVLTGI------SSTMQSEKQAAKPVAALDKNIIIKAHGQ 317 Query: 393 TNA 395 TNA Sbjct: 318 TNA 320
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 71.4 bits (175), Expect = 3e-15 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 14/110 (12%) Query: 416 LAAAGDPVILIRPDTSTADVAGF--AAAVGIATAVGARTAHASLVARQMGKPCVVGCAAI 473 LA + ++I D + +D A G AT +G RT+H+++++R + P VVG + Sbjct: 150 LATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEV 209 Query: 474 RFDEDGHQACIGDTIIAPGDWITIDGNAGRVYLGRGEIVARRPEAELAEL 523 I GD + +DG G V + E + E + A Sbjct: 210 T------------EKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAF 247
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 44.7 bits (106), Expect = 4e-07 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 11/89 (12%) Query: 136 ADAEAQSALEGIAREQGFKHIAFQYEPIAAALDYEQQVNSEELVLIVDIGGGTSDFSIVR 195 A + A+ A+ G + + EP+AAA+ V+ ++VDIGGGT++ +++ Sbjct: 118 ATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVIS 177 Query: 196 VSPERRGKADREGDILANGGIHIGGTDFD 224 + ++ + + IGG FD Sbjct: 178 L-----------NGVVYSSSVRIGGDRFD 195
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.5 bits (89), Expect = 8e-05 Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 7/128 (5%) Query: 389 AQQDSPLPLATPSDVPAPEPAPNPPASVAASVPSDRAPASATPKPDIAPPMVQPARSAAQ 448 Q ++ P A P+ P P S + PA T ++ P+ + Sbjct: 1134 EQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS-SNVEQPVTESTTVNTG 1192 Query: 449 PAKPRRRAAASTAAAPPTSPVEPA--PPQRTTRAVQ----RPAPAGAGTVGVNTSASVPT 502 + + A PT E + P R R+V+ PA + +T A Sbjct: 1193 NSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252 Query: 503 VSTRRAAA 510 ST A Sbjct: 1253 TSTNTNAV 1260 Score = 37.7 bits (87), Expect = 1e-04 Identities = 31/173 (17%), Positives = 49/173 (28%), Gaps = 11/173 (6%) Query: 374 ELFREEIDLAPTGSIAQQDSPLPLATPSDVPAPEPAPNPPASVAASVPSDRAPASATPKP 433 E T +AQ S + + A V +++ Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTT---ETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 434 DIAPPMVQPARSAAQPAKPRRRAAASTAAAPPTSPVEPAP----PQRTTRAVQRPAPAGA 489 ++P Q Q A+P R + P S P + T + + Sbjct: 1128 QVSPKQEQSETVQPQ-AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Query: 490 GTVGVNTSASVPTVSTRRAAARPPGVSSSSQAPR---REGLRAQEAAAAPAAE 539 TV S +T A +P S SS P+ R +R+ PA Sbjct: 1187 TTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATT 1239 Score = 33.9 bits (77), Expect = 0.002 Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 9/144 (6%) Query: 396 PLATPSDVPAPEPAPNPPASVAASVPSDRAPASATPKPDIAPPMVQPARSAAQPAKPRRR 455 P + P ++ A VPS + + D AP V P + A P++ Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAP--VPPP-APATPSETTET 1039 Query: 456 AAASTAAAPPTSPVEPAPPQRTTRAVQRPAPAGAGTVGVNTSAS------VPTVSTRRAA 509 A ++ T TT + A V NT + T T+ Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 510 ARPPGVSSSSQAPRREGLRAQEAA 533 + + + E + QE Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVP 1123 Score = 33.9 bits (77), Expect = 0.002 Identities = 33/163 (20%), Positives = 44/163 (26%), Gaps = 30/163 (18%) Query: 403 VPAPEPAPNPPASVAA-SVPSDR---APASATPKPDIAPPM------------------V 440 V SVPS+ A P P AP V Sbjct: 992 VDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTV 1051 Query: 441 QPARSAAQPAKPRRRAAASTAAA---PPTSPVEPAPPQRTTRAVQRPAPAGAGTVGVNTS 497 + A + R A A + T E A T+ Q TV Sbjct: 1052 EKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Query: 498 ASVPTVSTRRAAARPPGVSSSSQAPRREGLRAQEAAAAPAAER 540 A V T T+ +S +P++E + A PA E Sbjct: 1112 AKVETEKTQEVPKV-----TSQVSPKQEQSETVQPQAEPAREN 1149
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.7 bits (69), Expect = 0.012 Identities = 21/117 (17%), Positives = 29/117 (24%) Query: 371 AALPEEPVVEAAPPDVAPPEAAPREAASLVPVAPVDESVAGLATGTTAWPAVPDVSVRVE 430 A L V+ P V PE P APV P + + Sbjct: 58 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRD 117 Query: 431 APSEAQAPASAPRAELPRTQQRTSRTGSRSPSGPAGLGPWGIIRSADPARTVAAAAR 487 PAS P ++ T + S + + P A A Sbjct: 118 VKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQAL 174
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.3 bits (68), Expect = 0.015 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 3/119 (2%) Query: 379 PTGSIAKTQTPPAPAVRPPPPIAEATRDAALSVAGEPPTSAAAVPDLPIQILRPDGALFA 438 P + + T APA PP + + + EP + P+ I +P Sbjct: 44 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 103 Query: 439 APRSGEIVPRAPSP-VAEPTRRVVRYGQAATAPAM--PARRNQNHVVPRPAARPKFVAR 494 P+ + V + +R + A A A + V A+ P+ ++R Sbjct: 104 KPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSR 162
>FLAGELLIN#Flagellin signature. Length = 507 Score = 36.6 bits (84), Expect = 2e-04 Identities = 24/268 (8%), Positives = 65/268 (24%), Gaps = 3/268 (1%) Query: 295 TTTSVGAAAGASREVETAVGGLSSLAHDLSADASAVASASELSLSSAHVVATAAEQLSAA 354 + +V + ++S A A V ++ ++ + T + + A Sbjct: 188 SFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANG-QLTTDDAENNTA 246 Query: 355 ISGIASQVGRATAITKTAVTGREKATSTIQSLSEAVGKIAEVSNLIGGIAQQTNLLALNA 414 + + A A+ G K + + + + Sbjct: 247 VDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGE 306 Query: 415 TIEAARAGDAGRGFAVVAAEVKSLSDQTAKSTEEISRLISEVQNATKATVDAVEGIGGQI 474 + A V AA ++S + + +N + D + Sbjct: 307 KVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKG 366 Query: 475 SEIDVVAASVASAMQQQRAATSEISRSVAASAAAAKDVSEKISNV--GRGAQAVNDRAAE 532 V + +A T A+ + Sbjct: 367 ESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDS 426 Query: 533 VRTAIMQVGATMSSLQAVLTNIVRSTTK 560 + + V +++ ++Q + + + Sbjct: 427 ALSKVDAVRSSLGAIQNRFDSAITNLGN 454
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 52.6 bits (126), Expect = 3e-10 Identities = 60/242 (24%), Positives = 83/242 (34%), Gaps = 47/242 (19%) Query: 1 MKKILFATVALAALASSSAFAADLGARSYPYATKAPAYVAPIYNWTGFYLGAHLGGAFSS 60 MKK A A ++ A AA P N +Y GA LG + Sbjct: 1 MKKTAIAIAVALAGFATVAQAA------------------PKDN--TWYTGAKLGWSQYH 40 Query: 61 DNNFSGLGTGNNSNGRFLGGVQAGADWQFAPTWVIGAEGQYSWLSGSVGAAFPGGYVYNN 120 D F G + G G +Q P +G E Y WL G G V N Sbjct: 41 DTGFIN-NNGPTHENQLGAGAFGG--YQVNPY--VGFEMGYDWL----GRMPYKGSVENG 91 Query: 121 SQRGLG-SITGRVGYTWGPGL-LYVKGGYAYSDNNEKVTLAGNQVGFATSGDHRNGWTVG 178 + + G +T ++GY L +Y + G + K + G + D Sbjct: 92 AYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTKSNVYGK------NHDTGVSPVFA 145 Query: 179 GGIEYMFAPNWSAKAEYQY-YNFGSATFAAPAALVPTGSFTTDDHTFKAGVNYRFNWGVP 237 GG+EY P + + EYQ+ N G A T D+ GV+YRF G Sbjct: 146 GGVEYAITPEIATRLEYQWTNNIGDAH---------TIGTRPDNGMLSLGVSYRFGQGEA 196 Query: 238 VA 239 Sbjct: 197 AP 198
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.010 Identities = 50/295 (16%), Positives = 96/295 (32%), Gaps = 22/295 (7%) Query: 401 VDTLQVFRDNMIQARTLAAEQERENAAKAERATRMEARIAEFEATVRSALANLQSSATAM 460 VDT + N IQA + E A+ + A A T + N + + + Sbjct: 992 VDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTV 1051 Query: 461 QTTAQSMSQTADESNSLVSAVAAAAEETSVNVQTVSAGTEQLSSSIAEIGRQVVTSAQIA 520 + Q ++T + + A +++V T + Q S E Sbjct: 1052 EKNEQDATET-----TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATV 1106 Query: 521 KKAVEEAGATDSTMQGLADNASRVSVVVDLIQAIASQTNLLALNATIEAARAGEAGRGFA 580 +K E+A Q + S+VS Q + E AR + Sbjct: 1107 EKE-EKAKVETEKTQEVPKVTSQVS---------PKQEQSETVQPQAEPARENDP----T 1152 Query: 581 VVAQEVKSLASQTAKATDEIRAQIASMQQVASSAVAAIRNIGGTIAEIDNVTTAIAAAVE 640 V +E +S + TA + ++++Q + + N G ++ E TT A Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE--STTVNTGNSVVENPENTTP-ATTQP 1209 Query: 641 QQGTATHEMARNIQQAASGTSEVSHNITGVSSASAQAGTSANEVLTASEALRREA 695 + + +N + + + + SS + T + A+ +A Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDA 1264
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.5 bits (113), Expect = 2e-07 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 3/96 (3%) Query: 1045 ISGALIVCIENDPAILDGMRTLLTAWGAEVIAVSDPESAEEAIAARNGAVTGLLVDYHLD 1104 ++GA I+ ++D AI + L+ G +V S+ + IAA +G + ++ D + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDL--VVTDVVMP 58 Query: 1105 RGNGIAAIRDIRRRFNEALPAILITADRSPHVRAAA 1140 N + I++ LP ++++A + A Sbjct: 59 DENAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKA 93
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 30.5 bits (68), Expect = 0.013 Identities = 49/183 (26%), Positives = 67/183 (36%), Gaps = 31/183 (16%) Query: 142 DGNLLSFPFNASTPILYYNKDQFRAAGLDPAIAPRTWPELGQAAKRLREHG-VACGFTT- 199 +G L+++P L YNKD L P P+TW E+ K L+ G A F Sbjct: 126 NGKLIAYPIAVEALSLIYNKD------LLPN-PPKTWEEIPALDKELKAKGKSALMFNLQ 178 Query: 200 ----SWPSWIHIENFA-AFHNLPIATKANGF--GGLDAVLTFNHPVVTRHIAQLADWQKG 252 +WP +A + N K G G A LTF L D K Sbjct: 179 EPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTF-----------LVDLIKN 227 Query: 253 KVFDYGGRGQAAEPRFQKGECGIFIGSSATRADIKANSKFEVGFGMMPFWPDVAGAPQNS 312 K + AE F KGE + I ++I SK G ++P + G P Sbjct: 228 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNID-TSKVNYGVTVLPTF---KGQPSKP 283 Query: 313 IIG 315 +G Sbjct: 284 FVG 286
>PF06580#Sensor histidine kinase Length = 349 Score = 40.6 bits (95), Expect = 1e-05 Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 22/128 (17%) Query: 494 ITLSVDVPEGLFIDGYPGFYGQILTNLFLNAVNHAFADGRS-GTISIAARPRGADDIEII 552 + + + P ++ L N + H A G I + + + Sbjct: 240 LQFENQINPAIMDVQVPPM---LVQTLVENGIKHGIAQLPQGGKILLKGTKDN-GTVTLE 295 Query: 553 FADNGAGMTPEVQRQAFDPFFTTRRNEGGTGLGLHIVYNLVTQQLGGRMML--ESREGQG 610 + G+ + TG GL V + G + ++G Sbjct: 296 VENTGSLALKNTKE--------------STGTGLQNVRERLQMLYGTEAQIKLSEKQG-K 340 Query: 611 TTFRIIMP 618 +++P Sbjct: 341 VNAMVLIP 348
>PF06580#Sensor histidine kinase Length = 349 Score = 41.4 bits (97), Expect = 6e-06 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 46/195 (23%) Query: 398 IRDAAKRLTSMVDHLISDAMADAFDITIRREPVDIAALIHEVVEANQPLALNKQQVIAVS 457 I + + M+ L ++ ++R +L E+ + L L + Sbjct: 186 ILEDPTKAREMLTSL-----SELMRYSLRYSNARQVSLADELTVVDSYLQLAS-----IQ 235 Query: 458 APPQLSTMCDIDRIREAIDN----------LLSNAIKY----SPIGGRISVDVTDDGDNT 503 +L I+ AI + L+ N IK+ P GG+I + T D Sbjct: 236 FEDRLQFENQIN---PAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTV 292 Query: 504 IIGITDQGAGLSPEDLGRLFGRFQRLSAKPTAGESSTGLGLSIV-KRIVDMHGGEVTAKS 562 + + + G+ + STG GL V +R+ ++G E K Sbjct: 293 TLEVENTGSLALKNT------------------KESTGTGLQNVRERLQMLYGTEAQIKL 334 Query: 563 DGPGSGSTFTITLPA 577 + +P Sbjct: 335 SEKQGKVNAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.6 bits (217), Expect = 6e-22 Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 3/132 (2%) Query: 3 QSQHIIIVDDEAPAREMVGDYLKMHGFTVTLCDGGKSLRSAIETGPADLVVLDLNMPEED 62 I++ DD+A R ++ L G+ V + +L I G DLVV D+ MP+E+ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLSIIRDLKGR-TNIPVIMLTATASPIDRVVGLELGADDYVAKPCELRELMARIRSVL-- 119 ++ +K ++PV++++A + + + E GA DY+ KP +L EL+ I L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 120 RRSAPAKVAAAA 131 + P+K+ + Sbjct: 122 PKRRPSKLEDDS 133
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.004 Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 43/156 (27%) Query: 41 VIIGPNGAGKTTVLDLICGK----------TKATSGSIQFRGK------ELTKLRENEI- 83 V+ G G GK+T+++ + G Q G E+T R + Sbjct: 600 VLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAFRRADAE 659 Query: 84 -VKAGVGR---KFQTPSVFEDLSVFENLEISFPRGRTVF-GSL---AFKRD--------T 127 VKA +++ + PR + V + + D Sbjct: 660 AVKAFFSSRKDRYRGA--------YGRYVQDHPR-QVVIWCTTNKRQYLFDITGNRRFWP 710 Query: 128 VVKDRVEEVAEMIFLKDRLKTSAAELSH-GQKQWLE 162 V+ + + + +L A L G++ + Sbjct: 711 VLVPGRANLVWLQKFRGQLFAEALHLYLAGERYFPS 746
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 7e-18 Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 1/153 (0%) Query: 916 PRKTILVTDDDPVHRDLLREVLTPLGFILLSAPDGPACLALAQHCQPDLFILDISMPGMD 975 TILV DDD R +L + L+ G+ + + DL + D+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 976 GWTVAETLRSSGHHQARILMTSASALEAHGRPLAQPFHDSYLMKPIDIPRLLEAIRQLLK 1035 + + ++ + ++M++ + + + +D YL KP D+ L+ I + L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYD-YLPKPFDLTELIGIIGRALA 120 Query: 1036 LEWSYQSEHPVTQPRWRPDSGSRPPLRYVEELM 1068 S+ P G ++ + ++ Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL 153
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 9e-21 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 2/136 (1%) Query: 12 LVVDDSPETLRLLTDALDGAGMTVMVALDGAAAMRIVDQITPDIILLDAVMPGIDGFETC 71 LV DD +L AL AG V + + A R + D+++ D VMP + F+ Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLL 66 Query: 72 RKLKREAGLSNVPVIFMTGLADTEHIVQGLDAGGVDYVTKPIAVEEMLARIRVHLANARM 131 ++K+ ++PV+ M+ ++ + G DY+ KP + E++ I LA + Sbjct: 67 PRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 132 TQSARAALDVSGRFLL 147 S G L+ Sbjct: 125 RPSKLEDDSQDGMPLV 140
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 54.6 bits (131), Expect = 8e-11 Identities = 37/210 (17%), Positives = 64/210 (30%), Gaps = 41/210 (19%) Query: 40 STDGIGRSVVTI---VGSRGNFCSGALIAPRLVLTAGHCVQPGVDYRIVEYDRDRKPVLK 96 +T+G V I + SG ++ +LT H V D Sbjct: 82 TTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHG------DPHALKAFP 135 Query: 97 TVRRAAVHP--SFSMQSILVHRATADVALLELEAPLQG--------YAPVALSVPQTPLT 146 + +P F+ + I + D+A+++ Q A ++ + Sbjct: 136 SAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNN---AETQ 192 Query: 147 AGNAFTVAGIGVAIPGDGKSGGVVRAAALVATGKPGTLQIRLVDPATQGVKPGLGGCTGD 206 TV G PGD + + + K +Q D +T G G+ Sbjct: 193 VNQNITVTG----YPGDKPVATMWESKGKITYLKGEAMQY---DLSTTG---------GN 236 Query: 207 SGGPAFETQAQGEVLIGVISWSTGPNLGDG 236 SG P F + E +IG+ Sbjct: 237 SGSPVFN--EKNE-VIGIHWGGVPNEFNGA 263
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 623 bits (1609), Expect = 0.0 Identities = 263/1040 (25%), Positives = 467/1040 (44%), Gaps = 53/1040 (5%) Query: 5 ISAWSIRNPLPSILFSIILLILGWMSFTKLAVTRLPNADIPVISVAVAQFGAAPSELESQ 64 ++ + IR P+ + + +IIL++ G ++ +L V + P P +SV+ GA ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTKIIEDGVSGVEGARHIQSLIT-DGLSVTTITFALETNTDRAINDVKDAVTRVRSDLPQ 123 VT++IE ++G++ ++ S G T+TF T+ D A V++ + LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 NVTEPLISRVDKIGLPIVTYAAISPGK--TPEQLSFFVDDVVKRELQGVRGVSQVERIGG 181 V + IS ++ +S T + +S +V VK L + GV V+ G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 182 VEREILVSLDPDRLQAMGLTAVNVSQSLRGTNVDVAGGRAEIGKN------DQAIRTLAG 235 + + + LD D L LT V+V L+ N +A G+ + +I Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 236 AKTLNELSNTMIPLFG-GGEVRLADLGTVTDTIADRRTFARFNGEPVVALGIKRAKGASD 294 K E + + G VRL D+ V + AR NG+P LGIK A GA+ Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 295 VVVAAAVQKRIDQVKAAHP-DVDLRLIDTSVEFTKGNYEAAISTLFEGAILAVIIVLLFL 353 + A A++ ++ +++ P + + + F + + + TLFE +L +++ LFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 RDFRATVIAAISLPLSIFPAFWAMDILGFSLNMVSFLAITLSTGILVDDAIVEIENIVRH 413 ++ RAT+I I++P+ + F + G+S+N ++ + L+ G+LVDDAIV +EN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 MRMGKS-PYRAALDAADEIGLAVIAISLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVF 472 M K P A + +I A++ I++ + A+F P +F G G ++QF IT+ + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 FSLLAARFVTPMLAAYFLK--HHDHDDPPPGF----------ILRAYQRIVTWSVRHYYI 520 S+L A +TP L A LK +H + GF + Y V + Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 521 TILLGVGIFAASIWSTTLLSKGFLPAQDAARSLLAIELPPGAQLAYTEKVTEDIVARLRK 580 +L+ I A + L FLP +D L I+LP GA T+KV + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 581 --RPEVRSVFVDGGRLQGAMEVRRAGMIVNYTPKTERKITQKELELEITKDLETIPDIRF 638 + V SVF G V+ P ER + E I + + IR Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 639 WFTDENGLRPIKL--VLTGSDPKLVDNVA-----------SELASQMKRISIISNVVSDT 685 F + I TG D +L+D L + + + +V + Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 686 SLDRPELRVQPRADLAARLGVSTESLSQTIRVATIGDVGPALAKYDVGGRLVPIRVQLED 745 D + +++ + A LGVS ++QTI A G + + GR+ + VQ + Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTY---VNDFIDRGRVKKLYVQADA 776 Query: 746 AARSDVKTLEQLRVP--LGQFGEKGGVPLAVVADIKLDQGPTSISRYDRGRQATVSADLV 803 R + +++L V G+ VP + G + RY+ + + Sbjct: 777 KFRMLPEDVDKLYVRSANGEM-----VPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 804 GLAALGDATKLIDELPVRKTMPASVKLIPSDDAESLNELASGFITAITAGLMIVYAVLVL 863 + GDA L++ L +PA + + + + + ++V+ L Sbjct: 832 PGTSSGDAMALMENL--ASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 864 LFGTFLQPITILFSLPLSIGGAIGALMLTGKQLTIPVYIGMMMLMGIVTKNAIMLVEFAI 923 L+ ++ P++++ +PL I G + A L ++ + +G++ +G+ KNAI++VEFA Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 924 EA-IHAGTRRDEAIIDAGMKRARPIVMTTIAMVAGMMPSALAVGAGGEFRSPMALAVIGG 982 + G EA + A R RPI+MT++A + G++P A++ GAG ++ + + V+GG Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 983 LVFSTVLSLLFVPAMFLVMD 1002 +V +T+L++ FVP F+V+ Sbjct: 1010 MVSATLLAIFFVPVFFVVIR 1029
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.5 bits (87), Expect = 6e-05 Identities = 12/50 (24%), Positives = 22/50 (44%) Query: 57 VRVTGFVVPRREAVVGADQEGSRVIDVLVKEGDTVTENQELARLTPPPPQ 106 G + + E S V +++VKEG++V + L +LT + Sbjct: 84 ATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAE 133
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 81.5 bits (201), Expect = 2e-20 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 1/86 (1%) Query: 100 EITFDYNSANISQKSMASVQALGRALTSPDLKGSTFVLAGHTDAAGADAYNQDLSERRAD 159 ++ F++N A + + A++ L L++ D K + V+ G+TD G+DAYNQ LSERRA Sbjct: 220 DVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQ 279 Query: 160 SIKRYLVEKFGIAGSDLVTVGYGKSK 185 S+ YL+ K GI + G G+S Sbjct: 280 SVVDYLISK-GIPADKISARGMGESN 304
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 46.9 bits (111), Expect = 6e-08 Identities = 23/64 (35%), Positives = 28/64 (43%) Query: 288 PQPTPTPTLTPSPSPTLQPPAPPLPPPPPPSPPPPAPPPSPPSPPKAELVPPLPPVPPVP 347 P P ++T L+PP PPP P P P P P P P +A +V P P P Sbjct: 39 PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 98 Query: 348 SPAP 351 P P Sbjct: 99 KPKP 102 Score = 41.1 bits (96), Expect = 6e-06 Identities = 24/112 (21%), Positives = 28/112 (25%) Query: 291 TPTPTLTPSPSPTLQPPAPPLPPPPPPSPPPPAPPPSPPSPPKAELVPPLPPVPPVPSPA 350 TP P P P P P P PP P PK + P PV V Sbjct: 51 TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 110 Query: 351 PTNTPTANVPADPLAEDPTIKSLTAKIAANPDDAAALYRRGQVYASKGAYPQ 402 + E+ LT+ A A PQ Sbjct: 111 KRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ 162 Score = 40.0 bits (93), Expect = 1e-05 Identities = 24/109 (22%), Positives = 28/109 (25%), Gaps = 1/109 (0%) Query: 284 ADNTPQPTPTPTLTPSPSPTLQPPAPPLPPPPPPSPPPPAPPPSPPSPPKAELVPPLPPV 343 AD P P P P +P P PP P P P P PK P Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK-PKPKPKPKPKPVKKVQEQPK 111 Query: 344 PPVPSPAPTNTPTANVPADPLAEDPTIKSLTAKIAANPDDAAALYRRGQ 392 V A T + T+K + R Q Sbjct: 112 RDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQ 160
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.7 bits (85), Expect = 9e-05 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 8/98 (8%) Query: 99 MVQAPVAGTILA-STATIGALASGRGEALFSIIARNEYDLV-GLVPSAQIGKLAVNQPAR 156 +++APV+ + T G + + E L I+ ++ V LV + IG + V Q A Sbjct: 329 VIRAPVSVKVQQLKVHTEGGVVTT-AETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAI 387 Query: 157 IRIVG-----AGEVDGKIRRVAPTVEPNSQLGQAFIAI 189 I++ G + GK++ + + +LG F I Sbjct: 388 IKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVI 425 Score = 29.8 bits (67), Expect = 0.011 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 11/131 (8%) Query: 30 GAAVSVLKATKACFDNTVEVSGMVLARDET-AIRPDRPGLKVAEVMVDAGDTVTAGQNLA 88 ++ + + + +G + + I+P + V E++V G++V G L Sbjct: 67 FLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSI-VKEIIVKEGESVRKGDVLL 125 Query: 89 RLTPPEGGTIMVQAPVAGTILASTATIGALASGRGEALFSIIARNEYDLVGLVPSAQIGK 148 +LT + A S+ L R + L I N+ + L + Sbjct: 126 KLTA-------LGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL--PDEPYF 176 Query: 149 LAVNQPARIRI 159 V++ +R+ Sbjct: 177 QNVSEEEVLRL 187
>PF04183#IucA / IucC family Length = 580 Score = 32.5 bits (74), Expect = 0.005 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 4/83 (4%) Query: 30 ILRQPGRGDPHLAKFYRTALGNPALRALLRRAGLPELNDPGRLNALRQSLVLARDNPTP- 88 L+Q D L + LG PA + P R V+ R+NP Sbjct: 301 WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQ--EMLGVIWRENPCRW 358 Query: 89 -DWDEVGRPIAELVDSVALHHPM 110 DE +A L++ + P+ Sbjct: 359 LKPDESPVLMATLMECDENNQPL 381
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 30.6 bits (69), Expect = 0.019 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 508 ITLDVAARTINLDVPEDELARRRAAWTPPVPRFERG 543 LDV + +NL +P+ ++ R + PP ++ G Sbjct: 147 AQLDVGQQRLNLTIPQAFMSNRARGYIPP-ELWDPG 181
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.045 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 2/42 (4%) Query: 15 KTSSAVITATERVGFAVDRSDRFVLLGPSGCGKSTLLKAVGG 56 + G D S VL G G GKSTL+ + G Sbjct: 579 YILMGHVARVMEPGCKFDYS--VVLEGTGGIGKSTLINTLVG 618
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.9 bits (69), Expect = 0.020 Identities = 46/259 (17%), Positives = 78/259 (30%), Gaps = 25/259 (9%) Query: 378 LAQQEAARHVAEAAEQREAANRNMEQAVEEFRRAAEGLLGDVGNNAATMKHTASALTNIS 437 L + A+A+ + AAN+ EQA E +R AE A +T + N S Sbjct: 200 LQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAE--EQARQQAAIRAANTYAMPANGS 257 Query: 438 AQATQQAEAAADASGRTASNVQTVAAAAEELAGSIQEIGRQIVRSNTTVRAANATTTRSE 497 AT + AS Q ++ A L + + ++ ++ T + + Sbjct: 258 VVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASAPSVMAVGFASLTYSSRTAEQWQ 317 Query: 498 SEIEGLALAAQSISSVVDLIQAIAAQTNLLALNATIEAARAGEAGRGFAVVAQEVKSLAE 557 + A + L + N +A + Sbjct: 318 DQTPDSVRYALGM-DAAKLGLPPSVNLNAVAKA----------------------SGTVD 354 Query: 558 QTARATQEIAQHVQGIQTSTGNAVASVKQVGVAMREIDEVTGAIASAVEQQGAATREISE 617 R T E + + + + V+ K V V M + TG V A + Sbjct: 355 LPMRLTNEARGNTTTLSVVSTDGVSVPKAVPVRMAAYNATTGLYEVTVPSTTAEAPPLIL 414 Query: 618 NVQMAASGSNTLASSIATV 636 A+ N SS V Sbjct: 415 TWTPASPPGNQNPSSTTPV 433
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.0 bits (231), Expect = 6e-25 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 8/141 (5%) Query: 12 SVANILVVDDDPVMQLTIQRVLERAGHAVATAGDGQKALARFERESFDLVILDIFMPGMD 71 + A ILV DDD ++ + + L RAG+ V + DLV+ D+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 72 GLEAMRMILQRAPGVPILMTSGRPQTASSISEPDYLTMATKLGAVSALPKPFKPADLVTM 131 + + I + P +P+L+ S + ++I A++ GA LPKPF +L+ + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIK-------ASEKGAYDYLPKPFDLTELIGI 114 Query: 132 VSDCLASA-GNPAERPRPGHD 151 + LA P++ D Sbjct: 115 IGRALAEPKRRPSKLEDDSQD 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.5 bits (139), Expect = 2e-10 Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 10/123 (8%) Query: 1081 TILVVEDDRLVRGYVLAQLHALGYATLEAANAAEALAITNAGEPFELLFTDIIMPGTMNG 1140 TILV +DD +R + L GY +NAA AG +L+ TD++MP N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPD-ENA 62 Query: 1141 RQLASEVQRIRPGQRVLFTSGYT--ENAI--VHHGRLDEGLLLLPKPYRKSELAKMVRKA 1196 L +++ RP VL S AI G D LPKP+ +EL ++ +A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYD----YLPKPFDLTELIGIIGRA 118 Query: 1197 LAT 1199 LA Sbjct: 119 LAE 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 6e-22 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 9 ILVVDDYATMIRIIRNLLKQLGFENVDDASDGSAALAKMQAKKYGLVISDWNMEPMTGYD 68 ILV DD A + ++ L + G++ V S+ + + A LV++D M +D Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 69 LLREVRASPELSKTPFIMITAESKTENVIAAKKAGVSNYIVKPFN 113 LL ++ P ++++A++ I A + G +Y+ KPF+ Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD 107
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.8 bits (145), Expect = 1e-13 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 9/122 (7%) Query: 2 RNELLVIEDADVHLSILRKIATQAGFMTTGVSSVDAACAILQDRHFDCVTLDLSLGERSG 61 +LV +D ++L + ++AG+ S+ + D V D+ + + + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 TEVLDCLSKLKFRGPVLIISA--SEDDALDASVRIGNFLELHVYPPFSKPINLTLLRQTL 119 ++L + K + PVL++SA + A+ A E Y KP +LT L + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKA-------SEKGAYDYLPKPFDLTELIGII 115 Query: 120 KQ 121 + Sbjct: 116 GR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.8 bits (189), Expect = 1e-16 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 586 RVLVVDDNPTNRLVATKMLKDFDIQTDTACDGAEAVTAASRFNYDLILMDVRMPEMDGFQ 645 +LV DD+ R V + L + A + + DL++ DV MP+ + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 646 ATRTIRARGERRSNVPIIAFTANAFMEDIRACREAGMNDFVVKPARKKALVEAILRVLPA 705 I+ + R ++P++ +A E G D++ KP L+ I R L Sbjct: 65 LLPRIK---KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 706 P 706 P Sbjct: 122 P 122
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 42.3 bits (99), Expect = 3e-07 Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 19/198 (9%) Query: 7 RADVIPLIAEVFREHGFEGTSLSRITETTGLGKGSLYHFFPGGKDDMARAVLDHVDGWFE 66 R ++ + +F + G TSL I + G+ +G++Y F K D+ + + + Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHF-KDKSDLFSEIWELSESNI- 70 Query: 67 REIYAPLRDDAPGLAIARMWRGVDGYFRS-----GRRVCLVGAFALDE------TRDRFA 115 E+ + PG ++ + + S RR+ + F E + Sbjct: 71 GELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 116 AVIASYFTRWIEALRDALVRGG-----WPVAQAADSAEEVVLGIQGALVLARATNDAAVF 170 + IE + +AA + G+ + A + D Sbjct: 131 RNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKE 190 Query: 171 GRALAR-LQRRLQQPPSL 187 R L P+L Sbjct: 191 ARDYVAILLEMYLLCPTL 208
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.5 bits (157), Expect = 4e-13 Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 10/128 (7%) Query: 403 MERGDETILIVEDDSLVREYVIAQIKRLGYTTLAASKADEALSLIDSPARIDLLFTDIIM 462 M TIL+ +DD+ +R + + R GY S A I + DL+ TD++M Sbjct: 1 MTGA--TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVM 57 Query: 463 PGGMNGRQLAIEALKRRPNLKVLYTSGYT--ENAIVHHGRLDAGVL-LLTKPYQSADLAR 519 P N L K RP+L VL S AI + G L KP+ +L Sbjct: 58 P-DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAI---KASEKGAYDYLPKPFDLTELIG 113 Query: 520 MIRTALNT 527 +I AL Sbjct: 114 IIGRALAE 121
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 34.9 bits (80), Expect = 2e-04 Identities = 48/234 (20%), Positives = 67/234 (28%), Gaps = 65/234 (27%) Query: 6 MKTLASAVSLLIASSLSTFAADLSARYTKAPPPAAIYNWTGGYFGGNIGYGWGRSNLGTT 65 MK A A+++ +A + A AP Y G +G+ Sbjct: 1 MKKTAIAIAVALAGFATVAQA--------APKDNTWY------TGAKLGWSQYHDTG--- 43 Query: 66 LDQTSSWATEPVPFQNQFVAISNNRLNPSGVVGGLQA--GYNWQAGPSVFGIEADINGSG 123 F N N+L +G GG Q ++ G G GS Sbjct: 44 -------------FINNNGPTHENQLG-AGAFGGYQVNPYVGFEMGYDWLG-RMPYKGSV 88 Query: 124 VNKRVVYTGVNVPTTRTFNESIRNDWFMTLRGRAGYAIDTTL-LYVTGGLAVGNVKGSWD 182 N GV L + GY I L +Y G V W Sbjct: 89 ENGAYKAQGV------------------QLTAKLGYPITDDLDIYTRLGGMV------WR 124 Query: 183 LTSGNGYNKTGSADQTRAGWTIGAGVEHAFAPNWTVKAEYLYT----DLGSINY 232 + + N G T GVE+A P + EY +T D +I Sbjct: 125 ADTKS--NVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGT 176
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 40.3 bits (94), Expect = 6e-06 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 4/149 (2%) Query: 197 AALVREREHGTMDHLLVMPLSPFEIAISKI-WANALVIAVAVGVALYVVVRWYLQVPIMG 255 AA R T + +L L +I + ++ WA G+ + Y Q Sbjct: 89 AAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWL--- 145 Query: 256 SIPLFLAGTALYLFFATAVGLFLGTIARSMPQLGLLYILVAVPINMLSGGMTPVESQPVW 315 S+ L AL ++G+ + +A S LV PI LSG + PV+ P+ Sbjct: 146 SLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIV 205 Query: 316 LSTIMKASPSTHFVSFAQSILYRGAGIDV 344 T + P +H + + I+ +DV Sbjct: 206 FQTAARFLPLSHSIDLIRPIMLGHPVVDV 234
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.1 bits (75), Expect = 0.006 Identities = 9/24 (37%), Positives = 14/24 (58%) Query: 35 CVIGLIGPDGVGKSSLLSILAGAR 58 + L G G+GKS+L++ L G Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGLD 620
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.1 bits (130), Expect = 3e-10 Identities = 37/248 (14%), Positives = 88/248 (35%), Gaps = 45/248 (18%) Query: 82 QIVARMDSKELQQSLAKAQAQAEQAQHVVDQARASLAQLQTQKTLAEQEMERTRSLLQNG 141 Q +A+ E + +A + + ++ L Q++++ A++E + L + Sbjct: 247 QAIAKHAVLEQENKYVEAVNE-------LRVYKSQLEQIESEILSAKEEYQLVTQLFK-- 297 Query: 142 WTTKETADQRQQALDAAIAGLAGSQARISEAERALEAVRHDVALYTVQIADNSLIAPKAG 201 E D+ +Q I L ++ AP + Sbjct: 298 ---NEILDKLRQT-----------TDNIGLLTLELAKNEERQQASVIR-------APVSV 336 Query: 202 RI-QYRLANVGEVLGAGGKVFTMLDTGYVY-MDVFLPTEEVGKIKIGSDARILLDAYAD- 258 ++ Q ++ G V+ + ++ + + +++G I +G +A I ++A+ Sbjct: 337 KVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYT 396 Query: 259 --HPIPAKVSFVASQAQFTPKTVETRSERDKLMFRVRVRVDPARLAAHADAV--RSGLPG 314 + KV + A +R L+F V + ++ L+ + SG+ Sbjct: 397 RYGYLVGKVKNINLDA--------IEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAV 448 Query: 315 VAYVRWGS 322 A ++ G Sbjct: 449 TAEIKTGM 456 Score = 53.3 bits (128), Expect = 5e-10 Identities = 31/195 (15%), Positives = 67/195 (34%), Gaps = 21/195 (10%) Query: 7 PAKKRLRWPLLLLLLAVGAAGGGGYVWWQRLHPPLP-PGISVSNGRVEADEIDIATKYAG 65 P +R R ++ ++ G +GR + I Sbjct: 52 PVSRRPRLVAYFIMG--FLVIAFILSVLGQVEIVATANGKLTHSGRSKE----IKPIENS 105 Query: 66 RVAELSADIGDLVESGQIVARMDSKELQQSLAKAQAQAEQAQHVVDQARASLAQLQTQK- 124 V E+ G+ V G ++ ++ + + K Q+ QA+ + + ++ K Sbjct: 106 IVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKL 165 Query: 125 ------------TLAEQEMERTRSLLQNGWTTKET-ADQRQQALDAAIAGLAGSQARISE 171 ++E+E+ R SL++ ++T + Q++ LD A ARI+ Sbjct: 166 PELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINR 225 Query: 172 AERALEAVRHDVALY 186 E + + + Sbjct: 226 YENLSRVEKSRLDDF 240
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 55.7 bits (134), Expect = 4e-11 Identities = 14/90 (15%), Positives = 32/90 (35%) Query: 258 ALAPHDPDIANSYGCILQNLGRHDEAITVFEKAIAIRPQTADFHNHRGTSLAELHRFDEA 317 ++ + S G++++A VF+ + + F G + ++D A Sbjct: 30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 89 Query: 318 FASFDRAIALRPDFADAHWNAALFRLLAGD 347 S+ + ++AA L G+ Sbjct: 90 IHSYSYGAIMDIKEPRFPFHAAECLLQKGE 119 Score = 54.5 bits (131), Expect = 9e-11 Identities = 18/83 (21%), Positives = 30/83 (36%) Query: 245 RYDEAQPFGQRAHALAPHDPDIANSYGCILQNLGRHDEAITVFEKAIAIRPQTADFHNHR 304 +Y++A Q L +D G Q +G++D AI + + + F H Sbjct: 51 KYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHA 110 Query: 305 GTSLAELHRFDEAFASFDRAIAL 327 L + EA + A L Sbjct: 111 AECLLQKGELAEAESGLFLAQEL 133 Score = 32.6 bits (74), Expect = 0.003 Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 74 KRFDDAIEWFARAIRQDVSVPDSFIGLAQALRLAGRLDEAIKAYDRALQLRPD 126 +++DA + F D F+GL + G+ D AI +Y + Sbjct: 50 GKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIK 102 Score = 32.2 bits (73), Expect = 0.003 Identities = 24/100 (24%), Positives = 38/100 (38%) Query: 24 DTAEALCDAALRLLRAGQLTKAEETCRRALTLDAASIDALQAMGRVCVALKRFDDAIEWF 83 DT E L A ++G+ A + + LD +G A+ ++D AI + Sbjct: 34 DTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 93 Query: 84 ARAIRQDVSVPDSFIGLAQALRLAGRLDEAIKAYDRALQL 123 + D+ P A+ L G L EA A +L Sbjct: 94 SYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 30.3 bits (68), Expect = 0.014 Identities = 18/112 (16%), Positives = 34/112 (30%) Query: 154 LLQLAPDRAPTWFRLGESLEAEGRRDEAALAFEQVLKLQPDHVDAANKAGAVHFDAGRYV 213 L +++ D + L + G+ ++A F+ + L GA G+Y Sbjct: 28 LNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYD 87 Query: 214 EAIAQFDQSLRQQPDQAGVLCLKGISLRRLRRYDEAQPFGQRAHALAPHDPD 265 AI + + L + EA+ A L + Sbjct: 88 LAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTE 139