>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 31.8 bits (72), Expect = 0.003 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 7/155 (4%) Query: 163 YGEFFATGILIMAFMSIGVVSTA-TTIATLRERNTFKMYVCFPVSRF-VFLASLIVSRVI 220 Y F A G++ + M+ T + + T++ + + + L + + Sbjct: 65 YTAFLAAGMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATK 124 Query: 221 LMLAASVTLMLAARYLFQVPLPLWSLRALRAIPVVLLGAAMLLSLGTLLASRARSLAAAE 280 LA + ++AA + SL L A+PV+ L SLG ++ + A S Sbjct: 125 AALAGAGIGVVAAALGY---TQWLSL--LYALPVIALTGLAFASLGMVVTALAPSYDYFI 179 Query: 281 AWCNLIYFPLLFFSDLTIPLRAAPHWLRVVLLVLP 315 + L+ P+LF S P+ P + LP Sbjct: 180 FYQTLVITPILFLSGAVFPVDQLPIVFQTAARFLP 214
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 513 bits (1323), Expect = e-175 Identities = 194/567 (34%), Positives = 312/567 (55%), Gaps = 7/567 (1%) Query: 309 PNTLAGVCAAPGIAVGTLVRWDDAQIVPPELASGTPAAESRLLDRALAEVDAQLETTVRE 368 + + G+ A+ G+A+ + + + + + E L AL + +L + Sbjct: 2 HHKITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQ 61 Query: 369 ASRRGAIGEAGIFAVHRVLLEDPALVDAARDLI-SLGKSAGYAWRETIRAQTAVLADVDD 427 +A IFA H ++L+DP LVD + I + +A YA +E ++ +D+ Sbjct: 62 TEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDN 121 Query: 428 TLLAERAADLRDIDKRVLRAL-GYASASARELPAEAVLAAEEFTPSDLASLDRERVAALV 486 + ERAAD+RD+ KRVL L G + S + E V+ AE+ TPSD A L+++ V Sbjct: 122 EYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFA 181 Query: 487 MARGGATSHAAIIARQLGIPALVAVGDALYAIAQRTQVVVDASAGRLEYAPSALDVERAH 546 GG TSH+AI++R L IPA+V + I V+VD G + P+ +V+ Sbjct: 182 TDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYE 241 Query: 547 HERQRLAGVREANRRMSGEAALTRDGHRIEVAANIATLDDARVALDNGADAVGLLRTELM 606 +R ++ ++ GE + T+DG +E+AANI T D L NG + +GL RTE + Sbjct: 242 EKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFL 301 Query: 607 FIHRQAAPTASEHQQSYQSIVDALQGRTAIIRTLDVGADKEVDYLTLPPEPNPALGLRGI 666 ++ R PT E ++Y+ +V + G+ +IRTLD+G DKE+ YL LP E NP LG R I Sbjct: 302 YMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAI 361 Query: 667 RLAQVRPDLLDDQLRGLLAVKPYGSVRILLPMVTDVGELVRIRKRIDD-----FARAMGR 721 RL + D+ QLR LL YG+++++ PM+ + EL + + + + + + Sbjct: 362 RLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDV 421 Query: 722 AQAVEVGVMIEVPSAALLADQLAQHADFLSIGTNDLTQYTLAMDRCQADLAAQADGLHPA 781 + ++EVG+M+E+PS A+ A+ A+ DF SIGTNDL QYT+A DR ++ HPA Sbjct: 422 SDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPA 481 Query: 782 VLRLVDATVRGAEKHGKWVGVCGALGGDPVAVPVLVGLGVTELSVDPVSVPGIKAQVRRL 841 +LRLVD ++ A GKWVG+CG + GD VA+P+L+GLG+ E S+ S+ ++Q+ +L Sbjct: 482 ILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKL 541 Query: 842 DYQLCRQRAQDLLALESAQAVRAASRE 868 + + AQ L L++A+ V ++ Sbjct: 542 SKEELKPFAQKALMLDTAEEVEQLVKK 568
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 86.0 bits (213), Expect = 1e-20 Identities = 77/368 (20%), Positives = 143/368 (38%), Gaps = 31/368 (8%) Query: 17 RATTSLAAIFALRMLGLFMIMPVFSVYAKTIPGGENVVL-VGIALGAYGVTQSLLYIFYG 75 R + + AL +G+ +IMPV + + +V GI L Y + Q G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 76 WASDKFGRKPVIAAGLLIFALGSFVAAFAHDITWIIVGRVIQGM-GAVSSAVLAFIADLT 134 SD+FGR+PV+ L A+ + A A + + +GR++ G+ GA + A+IAD+T Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 135 SEHNRTKAMAMVGGSIGMSFAVAIVGAPI--VFHWVGMSGLFAIVGALSVAAIGVVLWVV 192 R + + G + G + + F AL+ +++ Sbjct: 125 DGDERARHFGFMSACFGFGM---VAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 193 PDAPRPVHVPAPFAEVLHNVELLRLNFGVLVLHATQTALFLVVPRLLVDGGLPVA----- 247 P++ + P E L+ + R G+ V+ A F+ + + G +P A Sbjct: 182 PESHKGERRPLR-REALNPLASFRWARGMTVVAALMAVFFI----MQLVGQVPAALWVIF 236 Query: 248 ----SHWQ-----VYLPVMGL--AFVMMVPAIIVAEKQGRMKPVLLGGIAAILIGQLLLG 296 HW + L G+ + + VA + G + ++L G+ A G +LL Sbjct: 237 GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML-GMIADGTGYILLA 295 Query: 297 VATHTILIVAAILFVYFLGFNILEASQPSLVSKLAPGSRKGAATGVYNTTQSIGLALGGV 356 AT + + V I + +++S+ R+G G S+ +G + Sbjct: 296 FATRGWMAF--PIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL 353 Query: 357 VGGVLLKH 364 + + Sbjct: 354 LFTAIYAA 361
>cloacin#Cloacin signature. Length = 551 Score = 42.4 bits (99), Expect = 4e-07 Identities = 28/74 (37%), Positives = 29/74 (39%), Gaps = 11/74 (14%) Query: 112 GGSGGGGGGGGDDGGYG--------GGGGGYGGGRDMERGGGGGRASGGGGAGARSGGGG 163 GG G G GGG G G GGG G G GG G GG G G G Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH---WGGGSGHGNGGGNGNSGGGSGTG 78 Query: 164 GGASRPSAPAGGGF 177 G S +AP GF Sbjct: 79 GNLSAVAAPVAFGF 92 Score = 35.5 bits (81), Expect = 9e-05 Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 9/76 (11%) Query: 110 GRGGSGGGGGGGGDDGGYGGGGGGYGGGRDMERGG------GGGRASG---GGGAGARSG 160 GRG + G G+ G G G GG D GGG SG GGG+G +G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 161 GGGGGASRPSAPAGGG 176 GG G + S G Sbjct: 66 GGNGNSGGGSGTGGNL 81 Score = 32.0 bits (72), Expect = 0.001 Identities = 18/54 (33%), Positives = 19/54 (35%) Query: 109 GGRGGSGGGGGGGGDDGGYGGGGGGYGGGRDMERGGGGGRASGGGGAGARSGGG 162 GG G G GGG G GG G GG + G G GG G Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 29.6 bits (66), Expect = 0.033 Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 37 LEEKQRLIESIVNRYPIPAILIAERKSG 64 L+ K IE+ + PIP+ LI R+SG Sbjct: 312 LDSKVNNIENALKLTPIPSNLIVYRRSG 339
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 60.1 bits (145), Expect = 7e-11 Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 41/208 (19%) Query: 12 LNLPSGGGSVSGDGGDFSVDLNTGTATLKFDLTVPAGPNGITPPHTLQYSAGAGDGAFGI 71 LP GG ++S G D G A++ L + A G P L YS+G G+G FG+ Sbjct: 18 PFLPKGGKALSQSGPD-------GLASITLPLPISAE-RGFAPALALHYSSGGGNGPFGV 69 Query: 72 GWSLGLMTIRRR-----------------------ITPATGAAEPAPPGACSLVGVGELV 108 GWS M+I R T +TG A P P + V Sbjct: 70 GWSCATMSIARSTSHGVPQYNDSDEFLGPDGEVLVQTLSTGDA-PNPVTCFAYGDVSFPQ 128 Query: 109 DMGARRFRPIVDATGLLIEFTGAS------WTATDKTDTQYTLGTSANARIG---GGALP 159 R++P +++ +E+ + W D + LG +A AR+ + Sbjct: 129 SYTVTRYQPRTESSFYRLEYWVGNSNGDDFWLLHDSNGILHLLGKTAAARLSDPQAASHT 188 Query: 160 AAWLVDRCADSAGNAIAYTWLDVGGARV 187 A WLV+ AG I Y++L G V Sbjct: 189 AQWLVEESVTPAGEHIYYSYLAENGDNV 216
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 34.7 bits (79), Expect = 0.002 Identities = 37/196 (18%), Positives = 77/196 (39%), Gaps = 13/196 (6%) Query: 518 VSQASGQINAAQQQLAVAQAQAQAYQAGVALAQTRATNAAKNAQ-EYGSLNSQVIVIQAT 576 +S+ + + AQ++L+ AQ++ + +R +++ E +L + + Sbjct: 184 LSEEAKAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQA 243 Query: 577 GQQVSGGDDGDYNGVSAMANQYLSGQ-RISGDSATVAAATNLAANRL---SQQFQIDSMN 632 + D+ +S AN L + V A + + + +I+ +N Sbjct: 244 SAKYKELDE-LVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRIN 302 Query: 633 RTTAEMQQALAQAQAQLAAANAQVSAAGANLAVAQLNAQAAAQTLGVFDADTFTPQVWKA 692 ++Q+A++Q A A+V A NL AQ N + DA T ++ Sbjct: 303 ADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIK----DAVDATVSFYQT 358 Query: 693 MGNFVDQIYERYMNMA 708 + ++ E+Y MA Sbjct: 359 LT---EKYGEKYSKMA 371
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 34.7 bits (79), Expect = 0.003 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Query: 149 QVLDGLAHAHENGVVHRDLKPQNVMVTTRDGEPCAKILDFGI 190 ++LD H + GVVH D+KP NV+ GEP ++D G+ Sbjct: 253 RLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPV--VIDLGL 292
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.5 bits (139), Expect = 8e-11 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 15/122 (12%) Query: 484 RALVVDDNENARETLGAMLATLGIRVDLRGTGKEGLRCFGECQHDIVVLDLELPDISGFE 543 LV DD+ R L L+ G V + R D+VV D+ +PD + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 544 VAEQIRWATSSDAARKTTILGVSAYES------ALLKGDHAIFDAFIPKPIHLDTLGGIV 597 + +I+ A +L +SA + A KG +D ++PKP L L GI+ Sbjct: 65 LLPRIK-----KARPDLPVLVMSAQNTFMTAIKASEKG---AYD-YLPKPFDLTELIGII 115 Query: 598 SR 599 R Sbjct: 116 GR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.9 bits (88), Expect = 5e-05 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 12/125 (9%) Query: 188 ARIAVVDDSPDVAETICEYFAEKGVAAIAYYDSVSFRKALEVEDFDGYILDWLLGEETAA 247 A I V DD + + + + G ++ + + + D D + D ++ +E A Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 248 PLVRGIRASENADAPIFLLTGKISTGEASEDEIADIVSSFNARCEE---KPVRLPILFAE 304 L+ I+ D P+ +++ ++ + + + KP L L Sbjct: 64 DLLPRIK-KARPDLPVLVMSA--------QNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 305 VARAL 309 + RAL Sbjct: 115 IGRAL 119
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.8 bits (80), Expect = 8e-04 Identities = 47/264 (17%), Positives = 93/264 (35%), Gaps = 28/264 (10%) Query: 77 AIVFGRLGDLVGRKHTFLITIVIMGISTFVVGFLPGYASIGIAAPVIFIAMRLLQGLALG 136 A V G L D GR+ L+++ + ++ P V++I R++ G+ G Sbjct: 60 APVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAP-------FLWVLYIG-RIVAGIT-G 110 Query: 137 GEYGGAATYVAEHAPSHRRGFYTSWIQTTATLGLFLSLLVILGVRTAIGEEAFGSWGWRV 196 A Y+A+ R + ++ G+ + G +G G + Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGM------VAG--PVLGGLM-GGFSPHA 161 Query: 197 PFVASILLLAVSVWIRLQLNESPVFLRIKAEGKTSKAPLTEAFGQWKNLKIVILALIGLT 256 PF A+ L ++ L + + + PL + + L Sbjct: 162 PFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASF-----RWARGMTVVAALM 216 Query: 257 AGQAVVWYTGQFYA---LFFLTQTLKVDGASANILIALALLIGTPF-FVFFGSLSDRIGR 312 A ++ GQ A + F D + I +A ++ + + G ++ R+G Sbjct: 217 AVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE 276 Query: 313 KPIILAGCLIAALTYFPLFKALTH 336 + ++ G +IA T + L T Sbjct: 277 RRALMLG-MIADGTGYILLAFATR 299 Score = 34.8 bits (80), Expect = 8e-04 Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 287 ILIALALLIGTPFFVFFGSLSDRIGRKPIILAGCLIAALTYF 328 IL+AL L+ G+LSDR GR+P++L AA+ Y Sbjct: 47 ILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYA 88
>PF06580#Sensor histidine kinase Length = 349 Score = 47.9 bits (114), Expect = 5e-08 Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 53/229 (23%) Query: 300 LAGLRTQAEF-ALRHEVNA-------DVARSLEQIATSSEQAARLVTQLLALARAENRAT 351 +A + +A+ AL+ ++N + R+L I +A ++T L L R Sbjct: 154 MASMAQEAQLMALKAQINPHFMFNALNNIRAL--ILEDPTKAREMLTSLSELMRY----- 206 Query: 352 GLTFEPVEIASLARQ--AVRDWV---QAALAKQMDLGYEGPDTDAPLRIDGQPVMLREML 406 L + SLA + V ++ ++ + +++ P ML + Sbjct: 207 SLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQV---PPML---V 260 Query: 407 GNLIDNAIRY----TPAGGRITVRVRAERAAGAVHLEVEDTGPGIPPNERERVVERFYRI 462 L++N I++ P GG+I ++ + G V LEVE+TG N +E Sbjct: 261 QTLVENGIKHGIAQLPQGGKILLKGTKDN--GTVTLEVENTGSLALKNTKE--------- 309 Query: 463 LGREGDGSGLGLAIVRE-IVAQHGGTLTIDDNVYQTSPRLAGTLVRVSI 510 +G GL VRE + +G I S + V I Sbjct: 310 ------STGTGLQNVRERLQMLYGTEAQIK-----LSEKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 98.8 bits (246), Expect = 6e-26 Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 61 IL+A+DD+ + L ++L ++GY V N ++ DL++ D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNE-LEARVRALTRR 118 +L R++ +LPVL+++A ++ +K + GA DY+ KPF L E + RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 40.6 bits (95), Expect = 6e-07 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Query: 2 RARGFTLIELMIVLAIVGVVAAYAIPAYQDYLARSRVGEGLALAASARLAVAENA 56 + RGFTL+E+M+V+ I+GV+A+ +P + A + + ENA Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVPNLM-----GNKEKADKQKAVSDIVALENA 55
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.046 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 14/107 (13%) Query: 205 AALSALLSVGLALTVSRGPWLQVG-----------VMVVAGFWMAFA-QARRDPA--ASR 250 + + +L+ + R WL++ +V+ W R A ++ Sbjct: 49 SLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTK 108 Query: 251 ARAWAIPVVLGVLFVAVNVAVRWANVHYHLGLAESAADRMRDAGQIA 297 A+ +P+ L ++F V V W+ +++ ++ D ++A Sbjct: 109 PVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMA 155
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 39.2 bits (91), Expect = 1e-06 Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 2/97 (2%) Query: 18 AGCAAFAPRDAAKLECTMPVAAYPENAKPLERRATVLVRAMITASGNAENVTVTTSSRNA 77 + L P YP A+ L V V+ +T G +NV + ++ Sbjct: 147 SKPVTSVASGPRALSRNQPQ--YPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPAN 204 Query: 78 AADRAAVDAMSRIACSQTPARGGEPYPFTLTRPFVFE 114 +R +AM R G E Sbjct: 205 MFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTE 241
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.017 Identities = 14/35 (40%), Positives = 17/35 (48%) Query: 32 VVFVGPSGCGKSTLMRMIAGLEEISGGELLIDGAK 66 VV G G GKSTL+ + GL+ S I K Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633
>PF06776#Invasion associated locus B Length = 214 Score = 29.5 bits (66), Expect = 0.020 Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 2/49 (4%) Query: 1 MKTGRRHFVRSVASASAALAAAAWSPARAAIDAPASPATALSLTPGRWS 49 + + RR R+ A A A A A A+ G W Sbjct: 38 LASCRRLARRNGARLMLAGAMAI--ALSFGWSDRADAQGAVRSVHGDWQ 84 Score = 28.7 bits (64), Expect = 0.040 Identities = 7/37 (18%), Positives = 13/37 (35%) Query: 10 RSVASASAALAAAAWSPARAAIDAPASPATALSLTPG 46 +++ A L+ S R A A A ++ Sbjct: 25 KAIQMGPAELSPMLASCRRLARRNGARLMLAGAMAIA 61
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.8 bits (67), Expect = 0.019 Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 57 REDALFRFASVSKPIVSAAAMRAVAAGKLDLDASI 91 R D F S K ++ A + V AG L+ I Sbjct: 57 RADERFPMMSTFKVVLCGAVLARVDAGDEQLERKI 91
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 35.2 bits (81), Expect = 4e-04 Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 5/155 (3%) Query: 26 LLALATAGFITIVTEALPAGLLPLMGRDLRVSDALVGQLVTVYAAGSIVAAIPLVAATRG 85 L+ L F +++ E + LP + D A + T + + + Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 86 MRRRPLLLAALAGFVVANTATAASPYYAPVLV-ARCVAGVSAGLLWALLAGYASRMVDAR 144 + + LLL + + + +L+ AR + G A AL+ +R + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 145 QRGRAIAIAMLGAPVAMSVGI-PL-GTALGAALGW 177 RG+A ++G+ VAM G+ P G + + W Sbjct: 136 NRGKAFG--LIGSIVAMGEGVGPAIGGMIAHYIHW 168
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 138 bits (349), Expect = 3e-38 Identities = 92/408 (22%), Positives = 171/408 (41%), Gaps = 15/408 (3%) Query: 17 VMLWLVATGFFMQTLDATIVNTALPSMAASLGESPLRMQSVVIAYSLTMAVMIPVSGWLA 76 +++WL FF L+ ++N +LP +A + P V A+ LT ++ V G L+ Sbjct: 15 ILIWLCILSFF-SVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 77 DTLGTRRVFFSAILIFTLGSLLCANAHT-LPLLVAFRVIQGVGGAMLLPVGRLAVLRTFP 135 D LG +R+ I+I GS++ H+ LL+ R IQG G A + + V R P Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 136 AERYLPALSFVAIPGLIGPLIGPTLGGWLVKIASWHWIFLINVPVGIAGCIATFYSMPDS 195 E A + +G +GP +GG + HW +L+ +P+ + + Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAH--YIHWSYLLLIPMITIITVPFLMKLLKK 191 Query: 196 RNPAAGRFDLKGYLLLTIGMIAISLSLDGLADLGMQHAMVLVLLILSLACFVAYGLYAVR 255 G FD+KG +L+++G++ L L++ +LS FV + + Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTT------SYSISFLIVSVLSFLIFVKHIR---K 242 Query: 256 APQPIFSLELFGIHTFSVGLLGNLFARIGSGAMPYLIPLLLQVSLGYGAFEAG-LMMLPV 314 P L F +G+L ++P +++ E G +++ P Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 315 AAAGMFSKRIITVLITRHGYRKVLLANTIMVGLMMASFALVSDAMPTWLKIAQLALFGGF 374 + + I +L+ R G VL + + + + + + ++ I + + GG Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGL 362 Query: 375 NSMQFTAMNTLTLKDLGTGGASSGNSLFSLVQMLSMSLGVTVAGALLA 422 + + T ++T+ L A +G SL + LS G+ + G LL+ Sbjct: 363 SFTK-TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>cloacin#Cloacin signature. Length = 551 Score = 46.2 bits (109), Expect = 3e-07 Identities = 42/113 (37%), Positives = 48/113 (42%), Gaps = 2/113 (1%) Query: 340 GASGGGASGGGTSGGGTSGGGASGGGASGGGASGSGASGSGASGGGASGGGASGGGASGG 399 G G G + G S G GG +G G GG + GSG S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 400 GASGGGASGGGTSGGGTSGGGTSGGGPSGGGPSGGGTSGGGTSGGGTSGGGTS 452 G GG + GG SG G G ++ P G T G G S G S Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 45.5 bits (107), Expect = 5e-07 Identities = 34/82 (41%), Positives = 38/82 (46%) Query: 405 GASGGGTSGGGTSGGGTSGGGPSGGGPSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 464 G G G + G S G GGP+G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 465 GTSSGAGHGGHGGGTGGGGGNS 486 G G G+ G G GTGG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAV 84 Score = 45.5 bits (107), Expect = 5e-07 Identities = 39/109 (35%), Positives = 45/109 (41%) Query: 374 SGASGSGASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTSGGGTSGGGPSGGGPSG 433 SG G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 434 GGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSSGAGHGGHGGGTGGG 482 G GG + GG SG G + + G S G GG G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 44.7 bits (105), Expect = 8e-07 Identities = 39/102 (38%), Positives = 46/102 (45%) Query: 295 GASGGGTSGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGTSGG 354 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 355 GTSGGGASGGGASGGGASGSGASGSGASGGGASGGGASGGGA 396 G GG + GG SG G + S + A G A +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 44.7 bits (105), Expect = 9e-07 Identities = 38/102 (37%), Positives = 45/102 (44%) Query: 190 GTSGRGAAGGGASSGGASGGGASGGGASGGGASGGSASGGGTSGGGASGGGASGGGASGG 249 G GRG G S+ G GG +G G GG + G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 250 GTSGGGASGGGTSGGGASGGGASGGGASGGSASGGGASGGGA 291 G GG + GG SG G + + A G A +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 44.3 bits (104), Expect = 1e-06 Identities = 38/102 (37%), Positives = 46/102 (45%) Query: 285 GASGGGASGGGASGGGTSGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGASGG 344 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 345 GASGGGTSGGGTSGGGASGGGASGGGASGSGASGSGASGGGA 386 G GG + GG SG G + + A G A + +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 43.9 bits (103), Expect = 2e-06 Identities = 38/102 (37%), Positives = 46/102 (45%) Query: 240 GASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGGSASGGGASGGGASGGGASGG 299 G G G + G S G GG +G G GG + G G S + GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 300 GTSGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGA 341 G GG + GG SG G + + A G A +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 43.2 bits (101), Expect = 2e-06 Identities = 42/113 (37%), Positives = 50/113 (44%), Gaps = 1/113 (0%) Query: 270 GASGGGASGGSASGGGASGGGASGGGASGGGTSGGGASGGGASGGGASGGGASGGGASGG 329 G G G + G+ S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 330 GASGGGASGGGASGGGASGGGTSGGGTSGGGA-SGGGASGGGASGSGASGSGA 381 G GG + GG SG G + + G A S GA G S S + S A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 43.2 bits (101), Expect = 2e-06 Identities = 37/100 (37%), Positives = 44/100 (44%) Query: 385 GASGGGASGGGASGGGASGGGASGGGTSGGGTSGGGTSGGGPSGGGPSGGGTSGGGTSGG 444 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 445 GTSGGGTSGGGTSGGGTSGGGTSSGAGHGGHGGGTGGGGG 484 G GG + GG SG G + ++ G T G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 43.2 bits (101), Expect = 3e-06 Identities = 39/113 (34%), Positives = 45/113 (39%), Gaps = 2/113 (1%) Query: 315 GASGGGASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTSGGGASGGGASGGGASGS 374 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 375 GASGSGASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTSGGGTSGGGPS 427 G G + GG SG G G ++ G T G G S G S Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 42.4 bits (99), Expect = 5e-06 Identities = 37/102 (36%), Positives = 44/102 (43%) Query: 235 GASGGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGGSASGGGASGGGASGG 294 G G G + G S G GG +G G GG + G G S G SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 295 GASGGGTSGGGASGGGASGGGASGGGASGGGASGGGASGGGA 336 G GG + GG SG G + + A G A +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 42.0 bits (98), Expect = 6e-06 Identities = 32/80 (40%), Positives = 37/80 (46%) Query: 450 GTSGGGTSGGGTSGGGTSSGAGHGGHGGGTGGGGGNSGGHGNGNGGGASGGSGSGNGHGS 509 G G G + G S G +G G GG G N GGG+ G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 510 GNGGGNGNGGGGGNGGGSGN 529 GNGGGNGN GGG GG+ + Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 42.0 bits (98), Expect = 6e-06 Identities = 40/117 (34%), Positives = 46/117 (39%), Gaps = 2/117 (1%) Query: 255 GASGGGTSGGGASGGGASGGGASGGSASGGGASGGGASGGGASGGGTSGGGASGGGASGG 314 G G G + G S G GG +G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 315 GASGGGASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTSGGGASGGGASGGGA 371 G GG + GG SG G G ++ G T G G S G S A Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 42.0 bits (98), Expect = 7e-06 Identities = 37/102 (36%), Positives = 45/102 (44%) Query: 305 GASGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTSGGGASGG 364 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 365 GASGGGASGSGASGSGASGGGASGGGASGGGASGGGASGGGA 406 G GG + G SG+G + + A G A +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 42.0 bits (98), Expect = 7e-06 Identities = 37/102 (36%), Positives = 44/102 (43%) Query: 230 GTSGGGASGGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGGSASGGGASGG 289 G G G + G S G GG +G G GG + G G S GG SG GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 290 GASGGGASGGGTSGGGASGGGASGGGASGGGASGGGASGGGA 331 G GG + GG SG G + + A G A +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 41.6 bits (97), Expect = 7e-06 Identities = 36/102 (35%), Positives = 43/102 (42%) Query: 220 GASGGSASGGGTSGGGASGGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGG 279 G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 280 SASGGGASGGGASGGGASGGGTSGGGASGGGASGGGASGGGA 321 GG + GG SG G + + A G A +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 41.6 bits (97), Expect = 8e-06 Identities = 37/102 (36%), Positives = 46/102 (45%) Query: 215 GASGGGASGGSASGGGTSGGGASGGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGG 274 G G G + G+ S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 275 GASGGSASGGGASGGGASGGGASGGGTSGGGASGGGASGGGA 316 G GG+ + GG SG G + + G A +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 41.6 bits (97), Expect = 9e-06 Identities = 35/100 (35%), Positives = 43/100 (43%) Query: 200 GASSGGASGGGASGGGASGGGASGGSASGGGTSGGGASGGGASGGGASGGGTSGGGASGG 259 G G + G S G GG +G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 260 GTSGGGASGGGASGGGASGGSASGGGASGGGASGGGASGG 299 G GG + GG SG G + + + A G A +GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 41.2 bits (96), Expect = 1e-05 Identities = 32/89 (35%), Positives = 41/89 (46%) Query: 519 GGGGNGGGSGNGTGNGGNNGGGHGNGSSGGGTSGGNGHGNGGGTSSGSGNGGGNGSGHGN 578 GG G G +G + +G NGG G G GG + G GSG+G G G G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 579 GGHGNGGGHGNGNGSGGAGNGGANGVGSG 607 G G G G G+G+GG + A V G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 40.5 bits (94), Expect = 2e-05 Identities = 38/117 (32%), Positives = 45/117 (38%), Gaps = 2/117 (1%) Query: 290 GASGGGASGGGTSGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGASGG 349 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 350 GTSGGGTSGGGASGGGASGGGASGSGASGSGASGGGASGGGASGGGASGGGASGGGA 406 G GG +G G G G ++ + G G G S G S A Sbjct: 63 G--NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 40.5 bits (94), Expect = 2e-05 Identities = 40/111 (36%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 360 GASGGGASGGGASGSGASGSGASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTSGG 419 G G G + G S SG G +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 420 GTSGGGPSGGGPSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSSGA 470 G GG + GG SG G G ++ G T G G S+GA Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 38.9 bits (90), Expect = 5e-05 Identities = 40/114 (35%), Positives = 47/114 (41%), Gaps = 2/114 (1%) Query: 168 GRGNSVGNASGGGTSGGGASGHGTSGRGAAGGGASSGGASGGGASGGGASGGGASGGSAS 227 GRG++ G S G GG +G G G + G G SS GG SG G GG SG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 228 GGGTSGGGASGGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGGSA 281 GG + GG SG G G ++ G T G G S G S A Sbjct: 66 GGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 38.9 bits (90), Expect = 6e-05 Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 494 GGGASGGSGSGNGHGSGNGGGNGNGGGGGNGGGSGNGTGNGGNNGGGHGNGSSGGGTSGG 553 G G +G+ + G+ NGG G G GGG GSG + N GGG G+G GG SG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSEN-NPWGGGSGSGIHWGGGSGH 62 Query: 554 NGHGNGGGTSSGSGNGGGNGS 574 G G + GSG GG + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 38.5 bits (89), Expect = 8e-05 Identities = 41/117 (35%), Positives = 47/117 (40%), Gaps = 4/117 (3%) Query: 260 GTSGGGASGGGASGGGASGGSASGGGASGGGASGGGASGGGTSGGGASGGGASGGGASGG 319 G G G + G S G G +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 320 GASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTSGGGASGGGASGGGASGSGA 376 G GG G SGGG+ GG A+ S GA G S + S A Sbjct: 63 GNGGGN----GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 38.2 bits (88), Expect = 8e-05 Identities = 31/85 (36%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 425 GPSGGGPSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSSGAGHGGHGGGTGGGGG 484 G G G + G S G GG +G G GG + G G S G GG G G GGG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG---GGSGSGIHWGGG 59 Query: 485 NSGGHGNGNGGGASGGSGSGNGHGS 509 + G+G GNG G GN Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAV 84 Score = 38.2 bits (88), Expect = 9e-05 Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 539 GGHGNGSSGGGTSGGNGHGNGGGTSSGSGNGGGNGSGHGNGGHGNGGGHGNGNGSGGAGN 598 GG G G + G S G+ NGG T G G G +GSG + + GGG G+G GG Sbjct: 3 GGDGRGHNTGAHSTS-GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 599 GGANGVGSGNGGHGNGGGHGN 619 G G +GG GG+ + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 38.2 bits (88), Expect = 1e-04 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 473 GGHGGGTGGGGGNSGGHGNG--NGGGASGGSGSGNGHGSGNGGGNGNGGGGGNGGGSGNG 530 GG G G G ++ G+ NG G G GG+ G+G S N G G G + GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 531 TGNGGNNGGGHGNGSSGGGTSGGNGHGNGGGTSSGSGNGG 570 GGN G G+G+ G ++ G S G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 38.2 bits (88), Expect = 1e-04 Identities = 36/117 (30%), Positives = 43/117 (36%), Gaps = 2/117 (1%) Query: 265 GASGGGASGGGASGGSASGGGASGGGASGGGASGGGTSGGGASGGGASGGGASGGGASGG 324 G G G + G S GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 325 GASGGGASGGGASGGGASGGGASGGGTSGGGTSGGGASGGGASGGGASGSGASGSGA 381 G GG +G G G G ++ G G G S S + A Sbjct: 63 G--NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 37.8 bits (87), Expect = 1e-04 Identities = 38/106 (35%), Positives = 44/106 (41%), Gaps = 1/106 (0%) Query: 283 GGGASGGGASGGGASGGGTSGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGAS 342 G G + G S G GG +G G GG + G G S GG SG G GG SG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 343 G-GGASGGGTSGGGTSGGGASGGGASGGGASGSGASGSGASGGGAS 387 G G SGGG+ GG A+ S GA G S + Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 37.0 bits (85), Expect = 2e-04 Identities = 37/114 (32%), Positives = 42/114 (36%), Gaps = 2/114 (1%) Query: 178 GGGTSGGGASGHGTSGRGAAGGGASSGGASGGGASGGGASGGGASGGSASGGGTSGGGAS 237 G G + G S G G G G G + G G S GG SG GG SG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 238 GGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGGSASGGGASGGGA 291 GG + GG SG G G ++ G G G S S G S A Sbjct: 66 GGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 37.0 bits (85), Expect = 2e-04 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 444 GGTSGGGTSGGGTSGGGTSGGGTSSGAGHGGHGGGTGGGGGNSGGHGNGNGGGASGGSGS 503 GG G +G ++ G +GG T G G G G N G G+G+G GGSG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 504 GNGHGSGNGGGNGNGGGGGN 523 GNG G G G+G GG Sbjct: 63 GNG-GGNGNSGGGSGTGGNL 81 Score = 37.0 bits (85), Expect = 2e-04 Identities = 38/117 (32%), Positives = 43/117 (36%), Gaps = 2/117 (1%) Query: 155 GTTGSTAGGTAATGRGNSVGNASGGGTSGGGASGHGTSGRGAAGGGASSGGASGGGASGG 214 G G A + GN G +G G GG + G G S GG S G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 215 GASGGGASGGSASGGGTSGGGASGGGASGGGASGGGTSGGGASGGGTSGGGASGGGA 271 G GG G S G GT G ++ G T G G S G S A Sbjct: 63 GNGGGN--GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 37.0 bits (85), Expect = 2e-04 Identities = 37/109 (33%), Positives = 43/109 (39%), Gaps = 1/109 (0%) Query: 210 GASGGGASGGGASGGSASGGGTSGGGASGGGASGGGASGGGTSGGGASGGGTSGGGASGG 269 G G G + G S GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 270 GASG-GGASGGSASGGGASGGGASGGGASGGGTSGGGASGGGASGGGAS 317 G G G SGG + GG A+ S GA G S + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 36.6 bits (84), Expect = 3e-04 Identities = 27/80 (33%), Positives = 32/80 (40%) Query: 461 TSGGGTSSGAGHGGHGGGTGGGGGNSGGHGNGNGGGASGGSGSGNGHGSGNGGGNGNGGG 520 + G G G G GG G G + G + G GSG+G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 521 GGNGGGSGNGTGNGGNNGGG 540 GNGGG+GN G G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 35.8 bits (82), Expect = 5e-04 Identities = 42/109 (38%), Positives = 51/109 (46%), Gaps = 6/109 (5%) Query: 128 NAGSGRGSSGGANDGNGAIGAAGIGVGGTTGSTAGGTAATGRGNSVGNASGGGTSGGGAS 187 + G GRG + GA+ +G I GG TG GG A+ G G S N GG SG G Sbjct: 2 SGGDGRGHNTGAHSTSGNIN------GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 188 GHGTSGRGAAGGGASSGGASGGGASGGGASGGGASGGSASGGGTSGGGA 236 G SG G GG +SGG SG G + + A G A +GG A Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 35.5 bits (81), Expect = 7e-04 Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 7/86 (8%) Query: 525 GGSGNGTGNGGNNGGGHGNGSSGGGTSGGNGHGNGGGTSSGSGNGGGNGSGHGNGGHGNG 584 GG G G G ++ G+ NG G G GGG S GSG N G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGL-------GVGGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 585 GGHGNGNGSGGAGNGGANGVGSGNGG 610 G G+G+G+GG G G+G Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 34.7 bits (79), Expect = 0.001 Identities = 37/115 (32%), Positives = 43/115 (37%), Gaps = 4/115 (3%) Query: 228 GGGTSGGGASGGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGGSASGGGAS 287 G G + G S G GG +G G GG + G G S GG SG G G GG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG---GGSGH 62 Query: 288 GGGASGGGASGG-GTSGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGA 341 G G G + GG GT G ++ G G G S G S A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 33.9 bits (77), Expect = 0.002 Identities = 28/70 (40%), Positives = 36/70 (51%) Query: 551 SGGNGHGNGGGTSSGSGNGGGNGSGHGNGGHGNGGGHGNGNGSGGAGNGGANGVGSGNGG 610 SGG+G G+ G S SGN G +G G GG + G + + G G+ G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 611 HGNGGGHGNG 620 HGNGGG+GN Sbjct: 62 HGNGGGNGNS 71 Score = 32.0 bits (72), Expect = 0.007 Identities = 28/114 (24%), Positives = 39/114 (34%) Query: 123 GSGGDNAGSGRGSSGGANDGNGAIGAAGIGVGGTTGSTAGGTAATGRGNSVGNASGGGTS 182 G G + +SG N G +G G G+ S+ G G+ + G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 183 GGGASGHGTSGRGAAGGGASSGGASGGGASGGGASGGGASGGSASGGGTSGGGA 236 GG +G+ G G G ++ G G G S S G S A Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 624 bits (1610), Expect = 0.0 Identities = 172/683 (25%), Positives = 295/683 (43%), Gaps = 75/683 (10%) Query: 9 RYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAAT 68 + NIG+ AH+DAGKTT TE +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TAFWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQPQSETVWR 128 + W+ ++NIIDTPGH+DF EV RS+ VLDGA ++ + GVQ Q+ ++ Sbjct: 62 SFQWEN-------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 129 QANKYKVPRIAFVNKMDRVGADFFRVQRQIGERLKGVAVPIQIPVGAEEHFQGVVDLVKM 188 K +P I F+NK+D+ G D V + I E+L V Q V M Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----------KVELYPNM 164 Query: 189 KAIVWDDESQGVKFTYEDIPANLVELAHEWREKMVEAAAEASEELLEKYLTDHNSLTEDE 248 + + Q + E +++LLEKY+ SL E Sbjct: 165 CVTNFTESEQ------------------------WDTVIEGNDDLLEKYM-SGKSLEALE 199 Query: 249 IKAALRKRTIANEIVPMLCGSAFKNKGVQAMLDAVIDYLPSPADVPAILGHDLDDKEAER 308 ++ R + P+ GSA N G+ +++ + + S Sbjct: 200 LEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH---------------- 243 Query: 309 HPSDDEPFSALAFKIMTDPFVGQLIFFRVYSGVVESGDTLLNATKDKKERLGRILQMHAN 368 FKI +L + R+YSGV+ D++ + K+K ++ + Sbjct: 244 --RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSING 300 Query: 369 ERKEIKEVRAGDIAAAVG--LK-EATTGDTLCDPGKPIILEKMEFPEPVISQAVEPKTKA 425 E +I + +G+I LK + GDT P + E++E P P++ VEP Sbjct: 301 ELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQR----ERIENPLPLLQTTVEPSKPQ 356 Query: 426 DQEKMGLALNRLAQEDPSFRVQTDEESGQTIISGMGELHLEIIVDRMKREFGVEATVGKP 485 +E + AL ++ DP R D + + I+S +G++ +E+ ++ ++ VE + +P Sbjct: 357 QREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEP 416 Query: 486 QVAYRETVRTVAEDVEGKFVKQSGGRGQYGHAVIKLEPNP-GKGYEFLDEIKGGVIPREF 544 V Y E + E + + + + P P G G ++ + G + + F Sbjct: 417 TVIYME---RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSF 473 Query: 545 IPAVNKGIEETLKSGVLAGYPVVDVKVHLTFGSYHDVDSNENAFRMAGSMAFKEAMRRAK 604 AV +GI + G L G+ V D K+ +G Y+ S FRM + ++ +++A Sbjct: 474 QNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAG 532 Query: 605 PVLLEPMMAVEVETPEDFMGNVMGDLSSRRGIVQGMEDIAGGGGKLVRAEVPLAEMFGYS 664 LLEP ++ ++ P++++ D + + ++ E+P + Y Sbjct: 533 TELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ--LKNNEVILSGEIPARCIQEYR 590 Query: 665 TSLRSATQGRATYTMEFKHYAET 687 + L T GR+ E K Y T Sbjct: 591 SDLTFFTNGRSVCLTELKGYHVT 613
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 25.4 bits (55), Expect = 0.024 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 11/71 (15%) Query: 1 MNKLIAALV--------AGLFATAAFAQASAPAAAS---APAEKAEAASAPAKKAHAKKH 49 MNKLI V A LFA+ + A + ++ + A+ + K A+K+ Sbjct: 1 MNKLIRRAVTIFAVTSVASLFASGVLETSMAESLSTNVISLADTKAKDNTSHKSKKARKN 60 Query: 50 HAKKHAKKAKE 60 H+K+ KE Sbjct: 61 HSKETPVDRKE 71
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 39.5 bits (92), Expect = 8e-06 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 9/186 (4%) Query: 42 AITLAAPARRVVSLAPHVTELIYAAG----GGAKLVGAVSYSDYPPAAKAIARVGSNKAL 97 A A R+V+L EL+ A G G A + + PP ++ VG Sbjct: 28 AHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEP 87 Query: 98 DLERIAALKPDLIVVWRHGNAEHETERLRALGIPLYFSEPRH-LDDVAASLDKLGLLLGT 156 +LE + +KP +V E A G FS+ + L SL ++ LL Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 157 HEIASAAADAYRRRIAQLRARYADK--PPVTVFFQAWDKPLITLNGDH-IVSDVIALCGG 213 A Y I ++ R+ + P+ + D + + G + + +++ G Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPL-LLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 214 RNVFAR 219 N + Sbjct: 207 PNAWQG 212
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 116 bits (291), Expect = 2e-30 Identities = 76/397 (19%), Positives = 157/397 (39%), Gaps = 14/397 (3%) Query: 25 LAVLDGAIANVALPTIARDLRASDAASIWIVNAYQLAVTISLLPLASLGDRIGYRRVYIA 84 +VL+ + NV+LP IA D A++ W+ A+ L +I L D++G +R+ + Sbjct: 25 FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLF 84 Query: 85 GLMLFTAASLGCALSGT-LPALATLRVIQGFGAAGIMSVNTALVRMIYPSSQLGRGVAIN 143 G+++ S+ + + L R IQG GAA ++ +V P G+ + Sbjct: 85 GIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLI 144 Query: 144 AMVVALSSAVGPTVASAVLAVAPWPWLFAINVPIGVAAVCGSLRALPANPGRSAPYDFIG 203 +VA+ VGP + + W +L I + I + V ++ L +D G Sbjct: 145 GSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKEVRIKGHFDIKG 203 Query: 204 AVMNACVFGLLIVSVDGLGHGGNRASVALTALVAAVIGYF-FVKRQLTQPAPLLPVDLMR 262 ++ + V + S ++ L+ +V+ + FVK P + L + Sbjct: 204 IIL-------MSVGIVFFMLFTTSYS--ISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGK 254 Query: 263 VPIFALSIGTSVASFTSQMLAFVALPFWLQNTLGFSQVQTG-LYMTPWPLVIVVAAPLAG 321 F + + F + +P+ +++ S + G + + P + +++ + G Sbjct: 255 NIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGG 314 Query: 322 VLSDRYSAGALGGIGLALFASGLFALATIGAHPTPVDIVWRMALCGAGFGLFQSPNNRAI 381 +L DR + IG+ + + + T + + G ++ + + Sbjct: 315 ILVDRRGPLYVLNIGVTFLSVSFLTASFL-LETTSWFMTIIIVFVLGGLSFTKTVISTIV 373 Query: 382 LSSAPRERAGGASGMLGTARLTGQTLGAALVALIFGI 418 SS ++ AG +L + G A+V + I Sbjct: 374 SSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>cloacin#Cloacin signature. Length = 551 Score = 28.5 bits (63), Expect = 0.006 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 49 GTVNVWGGDGWRDRDHWRGGDDRWHGGWRGSGNWRDGNDWHGGRGNGWQGGRGPAGGRN 107 G + G G D W ++ W GG GSG G HG G G G G N Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPW-GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Score = 27.8 bits (61), Expect = 0.014 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 74 GGWRGSGNWRDGNDWHGGRGNGWQGGRGPAGGRNVRGGNDWPDGGGNGRGG 124 G GSG + N W GG G+G G G G GN GGG+G GG Sbjct: 32 GASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN---SGGGSGTGG 79
>PF05860#haemagglutination activity domain. Length = 117 Score = 65.2 bits (159), Expect = 3e-14 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 23/138 (16%) Query: 72 AQVVG-AGANAPSVIQTQNGLQQVNITKPSGAGVSLNTYSQFDVPKQGVIVNNSPTLTNT 130 AQ+ S I T+ + + +G+ + + + +F VP G N+PT Sbjct: 1 AQITPDTTLPINSNITTEGNTRIIERGTQAGSNLFHS-FQEFSVPTSGTAFFNNPT---- 55 Query: 131 QQAGYINGNPNLSPNGAARIIINQVNSNNPSQLKGYVEIAGQRAEMIISNSSGLVVDGGG 190 + II++V + S + G + A + + N +G++ Sbjct: 56 ----------------NIQNIISRVTGGSVSNIDGLIRANAT-ANLFLINPNGIIFGQNA 98 Query: 191 FINTSRAILTTGTPNLNA 208 ++ + + + L Sbjct: 99 RLDIGGSFVGSTANRLKF 116
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.005 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 2/76 (2%) Query: 26 PSPADQAAAARANAEQDRQAQQQRDAQQRDAAVRAPSVRSEVPKVEAYPALPAETPCFRI 85 P+PA + AE +Q + + ++DA + ++ EA + A T + Sbjct: 1028 PAPATPSETTETVAENSKQESKTVEKNEQDAT--ETTAQNREVAKEAKSNVKANTQTNEV 1085 Query: 86 DRFTLDVPNSLPDTTK 101 + + + TK Sbjct: 1086 AQSGSETKETQTTETK 1101
>PF06917#Periplasmic pectate lyase Length = 555 Score = 26.8 bits (59), Expect = 0.033 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 8/77 (10%) Query: 58 AGDMAPHTGHHHLLIDGKPVARGDVIPANDHS----LHFGKPQTETEVRLSPGRHTLTLQ 113 A A +TG GK + R V+ N + F PQ + P T Sbjct: 229 AYKYAEYTGDAAAAAWGKHLYRQYVLARNPETGLPVYQFSSPQQRQPI---PADDNQTQS 285 Query: 114 -FGDGAHRSYGPEMSQT 129 +GD A R +GPE + Sbjct: 286 WYGDRAKRQFGPEFGEI 302
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.8 bits (69), Expect = 0.024 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%) Query: 460 ARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKE-------IEADAK 504 +R K ++EK LEE ++ A LE+L K+L KE +EA+AK Sbjct: 391 SREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAK 442
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 61.0 bits (148), Expect = 3e-12 Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 6/144 (4%) Query: 256 VIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPLRALLFAGVSSPYLLVPVQ 315 ++ A + Q A P +G + R+GRRP+LL+ A + + A ++L + Sbjct: 47 ILLALYALMQFACA---PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGR 103 Query: 316 MLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVGATLSTALAGFAADHFGNA 375 ++ GI+ A V I AD+ G R G G G L G F Sbjct: 104 IVAGITGATGAVAGAYI-ADITDGDERARH-FGFMSACFGFGMVAGPVLGGLMGG-FSPH 160 Query: 376 MSFFGLAAAGALATLLVWFAMPET 399 FF AA L L F +PE+ Sbjct: 161 APFFAAAALNGLNFLTGCFLLPES 184
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 31.5 bits (71), Expect = 0.004 Identities = 15/65 (23%), Positives = 23/65 (35%) Query: 102 SAPVVEAVAVPVEPASEPIAAPEPASAPEPAETAPPKKPHREAAPPRKPARVAPPAPAPA 161 P E + P + A I P+P P+P ++P R+ P APA Sbjct: 76 PEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPA 135 Query: 162 PAPAP 166 + Sbjct: 136 RPTSS 140
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 39.4 bits (92), Expect = 4e-06 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 31 IGILGGTFDPIHDGHLALARRFAHVLRLTELVLMPAGQPYQKQDVSAAEHRLAMTRAAAA 90 I G+FDPI GHL + R + ++ + P KQ + + + RL A A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRL--FDQVYVAVLRNP-NKQPMFSVQERLEQIAKAIA 58 Query: 91 SLVLPGVAV 99 LP V Sbjct: 59 H--LPNAQV 65
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.2 bits (192), Expect = 2e-19 Identities = 71/258 (27%), Positives = 110/258 (42%), Gaps = 6/258 (2%) Query: 4 GIAGRTALVCAASKGLGRGCAQALAAEGARLVIVARTRETLEAAAADIRAATGADVTAVA 63 GI G+ A + A++G+G A+ LA++GA + V E LE + ++A A Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKA-EARHAEAFP 63 Query: 64 CDITTPEGRA---AALAACPQP-DILVTNAGGPPPGDFRDFTHDDWIRALEANMLTPIEL 119 D+ A + P DILV AG PG + ++W N Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 120 IRASVDGMIARRFGRVVNITSSAVKAPIDVLALSNGARSGLTGFVAGLARKVAEHNVTIN 179 R+ M+ RR G +V + S+ P +A +++ F L ++AE+N+ N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 180 NLLPGLFDTDRIATTLAAAAQAQGATVDELRARRTKEIPAKRLGTPDEFGAACAFLCSVH 239 + PG +TD + +L A + IP K+L P + A FL S Sbjct: 184 IVSPGSTETD-MQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 240 AGYITGQNWLLDGGAYPG 257 AG+IT N +DGGA G Sbjct: 243 AGHITMHNLCVDGGATLG 260
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.4 bits (79), Expect = 7e-04 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 9/101 (8%) Query: 83 ALVIGAYADRAGRKPAMTLTLAMMAVGTGAIAVLPGYETIGVAAPILLVVTRLIQGLAWG 142 A V+GA +DR GR+P + ++LA AV +A P +L + R++ G+ G Sbjct: 60 APVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIVAGIT-G 110 Query: 143 GEAGPATTYILEAAPPERRAAYACWQVATQGFAAVAAGLAG 183 A YI + + RA + + A GF VA + G Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLG 151
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.0 bits (145), Expect = 4e-13 Identities = 20/73 (27%), Positives = 41/73 (56%) Query: 7 RRTRERILELSLKLFNEIGEPNVTTTTIAEEMEISPGNLYYHFRNKDDIINSIFAQFEQQ 66 + TR+ IL+++L+LF++ G + + IA+ ++ G +Y+HF++K D+ + I+ E Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 67 IERRLRFPEDHRP 79 I + P Sbjct: 70 IGELELEYQAKFP 82
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 29.9 bits (67), Expect = 0.013 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 10/96 (10%) Query: 138 YAVILAGWASNSKYAFLGAMR-------AAAQMVSYEISMGFALVLVLMTAGSLNLSEIV 190 Y GW+ F+ A Y+++ + G + Sbjct: 29 YTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPY---K 85 Query: 191 GSQQHGFFAGHGVNFLSWNWLPLLPVFVIYFISGIA 226 GS ++G + GV + P+ IY G Sbjct: 86 GSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGM 121
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 745 bits (1925), Expect = 0.0 Identities = 279/1104 (25%), Positives = 502/1104 (45%), Gaps = 100/1104 (9%) Query: 3 LARPFITRPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTILVQASLPGASPETVATS 62 +A FI RP+ +LA+ + +AG A ++LPV+ P + P + V A+ PGA +TV + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTSPLERHLGSIADVAEMTSMS-SVGNARIVLQFNLNRDIDGAARDVQAAINAARADLPA 121 VT +E+++ I ++ M+S S S G+ I L F D D A VQ + A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 SLKSNPTYRKVNPADSPIMVVSLTS--KTASPAKLYDAASTVLQQSLSQIDGIGQVSLSG 179 ++ + S +MV S + + D ++ ++ +LS+++G+G V L G Sbjct: 121 EVQ-QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 SANPAVRVELEPQALFHYGIGLEDVRAALASANANSPKGAIEAGP------HRYQLYTND 233 + A+R+ L+ L Y + DV L N G + P + Sbjct: 180 AQY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QATKAAQYKDLVI-AYRNHAAVSLSDVSSVVDSVEDLRNLGLMNGERAVLVILYRSPGAN 292 + ++ + + + + V L DV+ V E+ + +NG+ A + + + GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 IIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADTEHTLIIAVSLVVMVVFLF 352 +DT + +KA L +L P ++V D + ++ S+ + TL A+ LV +V++LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVATGFVVDDAIVVLENIAR 412 L+N RATLIP++AVP+ ++GTF + G+S+N L++ +++A G +VDDAIVV+EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-ENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGGIVGRLFREFALTLSLAI 471 + E+ P +A ++ ++ I++ L AVF+P+ GG G ++R+F++T+ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 AVSLVVSLTLTPMMCARLLPEAHAPRDE--GRVARWLERGFEWMQRGYERTLSWALRHPF 529 A+S++V+L LTP +CA LL A E G W F+ Y ++ L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 530 TILMTLVATIALNIALYIVVPKGFFPQQDTGLMIGGIQADQTTSFQAMKLRFTEMMRIIR 589 L+ +A + L++ +P F P++D G+ + IQ + + + ++ Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 590 ANP-----NVANVAGFT-GGAQTNSGFMFVALKDKPQR---KLSADQVIQQLRPQLAEVA 640 N +V V GF+ G N+G FV+LK +R + SA+ VI + + +L ++ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 641 GARTFLQAAQDIRAGGRQSNAQYQFT-LLGDSTAELYKWGP-ILTEALQKRPELADVNSD 698 I G + ++ G L + +L A Q L V + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 699 QQQGGLEAMVTIDRATAARLGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPQY 758 + + + +D+ A LG+ + I+ T+ A G V+ + + ++ ++ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 759 WQSPEMLKQIYISTSGGSASGVQTTNAAAGTYVATTARASTAGAAAQSAAAIAADSARNQ 818 PE + ++Y+ ++ G V + +V + R R Sbjct: 779 RMLPEDVDKLYVRSANGEM--VPFSAFTTSHWVYGSPRLE-----------------RYN 819 Query: 819 ALNSIASSG--KSSASSGAAVSTSKSTMVPLSAIASFGPSTTPLAVNHQGLFVATTISFN 876 L S+ G SSG A++ ++ Sbjct: 820 GLPSMEIQGEAAPGTSSGDAMALMENLAS------------------------------K 849 Query: 877 LPPGVSLSKATQVIYQTMAEVGVPPTIQGSFQGTAQAFQESLKDQPILILAALAAVYIVL 936 LP G+ G + P L+ + V++ L Sbjct: 850 LPAGIGY------------------DWTGMSYQERLSG----NQAPALVAISFVVVFLCL 887 Query: 937 GILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIVKKNAIMMVDF 996 LYES+ PV+++ +P VG LL LF + + ++G++ IG+ KNAI++V+F Sbjct: 888 AALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEF 947 Query: 997 AIDA-SRQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAEMRAPLGIAIA 1055 A D ++GK +A A +R RPI+MT++A +LG LPLA G G+ + +GI + Sbjct: 948 AKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVM 1007 Query: 1056 GGLIVSQMLTLYTTPVVYLYMDRL 1079 GG++ + +L ++ PV ++ + R Sbjct: 1008 GGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 96.1 bits (239), Expect = 4e-22 Identities = 83/503 (16%), Positives = 167/503 (33%), Gaps = 25/503 (4%) Query: 2 NLARPFITRPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTILVQASLP-GASPETVA 60 N + L+ I + F++LP S LP+ D L LP GA+ E Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 TSVTSPLERHLGSIAD----VAEMTSMSSVGNAR----IVLQFNLNRDIDGAARDVQAAI 112 + + +L + V + S G A+ + + +G +A I Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 113 NAARADLPASLKSNPTYRKVNPADSPIMVVSLTSKT-----ASPAKLYDAASTVLQQSLS 167 + A+ +L + + L A + +L + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 168 QIDGIGQVSLSGSAN-PAVRVELEPQALFHYGIGLEDVRAALASANANSPKGAIEAGPHR 226 + V +G + ++E++ + G+ L D+ +++A + Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 227 YQLYT---NDQATKAAQYKDLVIAYRNHAAVSLSDVSSVVDSVEDLRNLGLMNGERAVLV 283 +LY L + N V S ++ V L NG ++ + Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHW-VYGSPRLERYNGLPSMEI 826 Query: 284 ILYRSPGANIIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADTEHTLIIAVS 343 +PG + D A + L + LPA I S R S + I+ Sbjct: 827 QGEAAPGTSSGD----AMALMENLASKLPAGIGYD-WTGMSYQERLSGNQAPALVAISFV 881 Query: 344 LVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVATGFVVDDA 403 +V + + +W + + VP+ IVG A L + ++ L+ G +A Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 404 IVVLENI-ARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGGIVGRLFRE 462 I+++E + G ++A R +L SL+ + LP+ + G Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 463 FALTLSLAIAVSLVVSLTLTPMM 485 + + + + ++++ P+ Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVF 1024 Score = 59.9 bits (145), Expect = 5e-11 Identities = 37/225 (16%), Positives = 84/225 (37%), Gaps = 4/225 (1%) Query: 870 ATTISFNLPPGVSLSKATQVIYQTMAEV--GVPPTIQGS-FQGTAQAFQESLKDQPILIL 926 A + L G + + I +AE+ P ++ T Q S+ + + Sbjct: 286 AAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLF 345 Query: 927 AALAAVYIVLGILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIV 986 A+ V++V+ + ++ + +P +G L F + + + G++L IG++ Sbjct: 346 EAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLL 405 Query: 987 KKNAIMMVDFAIDASRQGKSSF-DAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAE 1045 +AI++V+ + K +A ++ ++ M +P+AF G Sbjct: 406 VDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGA 465 Query: 1046 MRAPLGIAIAGGLIVSQMLTLYTTPVVYLYMDRLRVWAEKRRDRR 1090 + I I + +S ++ L TP + + + Sbjct: 466 IYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGG 510
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 802 bits (2073), Expect = 0.0 Identities = 284/1035 (27%), Positives = 498/1035 (48%), Gaps = 31/1035 (2%) Query: 4 SRVFILRPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQVQTFYPGASPEVMTSSV 63 + FI RP+ +L +M+AG +A+ LP+A P + P + V YPGA + + +V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 TAPLERQFGQMPSLNQMSSQS-SAGASVITLQFSLDLPLDIAEQEVQAAINAAGNLLPSD 122 T +E+ + +L MSS S SAG+ ITL F DIA+ +VQ + A LLP + Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 123 LPAPPIYAKVNPADAPVITLAVTSKTLPLTQ--VQDLADTRLAMKISQVSGVGLVSLSGG 180 + I + + ++ S TQ + D + + +S+++GVG V L G Sbjct: 122 VQQQGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 NRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNFDGP------TRAYTINANDQ 234 A+RI + L Y L D+ + N G G +I A + Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 235 LTSADQYNDAVV-AYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANV 293 + +++ + +G V L DVA++ G EN + A ++ +PA L ++ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 IQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFL 353 + T +KA L +LQ P + V D T ++ ++ +V L A+ LV LVMYLFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 ANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENIARY 413 N+ AT+IP+++VP+ L+GT A++ G+S+N L++ + +A G +VDDAIV++EN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 -VEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIV 472 +E+ EA K QI ++ + + L AV IP+ F G G ++ +F+IT+ + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 ISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLIERV----IERYGVALQWVLDRQR 528 +S +V+L L P +CA LL+ E H + G + Y ++ +L Sbjct: 480 LSVLVALILTPALCATLLK-PVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 529 ATLVVAVLTLALTALLYAVIPKGFFPTQDTGVIQAITQAPQSVSYGAMAERQQALAAEIL 588 L++ L +A +L+ +P F P +D GV + Q P + + + L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 589 KH--PDVVSLTSFIGVDGANITLNSGRMLINLKPRDERS---ESAGDVIRSLQRQVANVT 643 K+ +V S+ + G + N+G ++LKP +ER+ SA VI + ++ + Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 644 GISLYMQPVQDLTIDSTVSPTQYQFMLTS---PNPDEFATWVPKLVDRLRKEPS-LADVA 699 + P I + T + F L D +L+ + P+ L V Sbjct: 659 DGFVI--PFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 700 TDLQNSGKSVYIEIDRTSAARFGITPATVDNALYDAYGQRIVSTIFTQSNQYRVILESEP 759 + +E+D+ A G++ + ++ + A G V+ + ++ ++++ Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 760 QMQHYTDSLNGIYLPSAGGGQVPLSAIATFRERPAPLLVSHLSQFPAATISFNLAPGASL 819 + + + ++ +Y+ SA G VP SA T + + P+ I APG S Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 820 GEAVKAIDAAERELGLPASFQTRFQGAALAFQASLSNQLFLILAAIVTMYIVLGVLYESY 879 G+A+ ++ +L PA + G + + S + L+ + V +++ L LYES+ Sbjct: 837 GDAMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESW 894 Query: 880 IHPITILSTLPSAGVGALLALMITGHDLDIIGIIGIVLLIGIVKKNAIMMIDFALEAERV 939 P++++ +P VG LLA + D+ ++G++ IG+ KNAI++++FA + Sbjct: 895 SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEK 954 Query: 940 EGKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQ 999 EGK EA A +R RPILMT+LA +LG +PL + +GAGS + +GI + GG++ + Sbjct: 955 EGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSAT 1014 Query: 1000 VLTLFTTPVIYLGFD 1014 +L +F PV ++ Sbjct: 1015 LLAIFFVPVFFVVIR 1029
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.3 bits (115), Expect = 4e-08 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 16/149 (10%) Query: 84 AARGEMPVVLNALGTVTPLANV-TVRTQLSGYLQAVSFQEGQIVKKGDVLAQIDPRP--- 139 + G++ +V A G +T ++ + ++ + +EG+ V+KGDVL ++ Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA 134 Query: 140 ----YQISLANAQGALARDEALLATARLDLKRYQTLVAQ---DSIAKQTADTQASLVKQY 192 Q SL A+ R + L + L+ L + +++++ SL+K+ Sbjct: 135 DTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKE- 193 Query: 193 EGTVQIDRAAIDSAKLNLAYARITAPVSG 221 Q + L + A Sbjct: 194 ----QFSTWQNQKYQKELNLDKKRAERLT 218 Score = 38.3 bits (89), Expect = 5e-05 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 26/182 (14%) Query: 141 QISLANAQGALARDEALLAT--ARLDLKRYQTLVAQDSIAKQTADTQASLVKQY-EGTVQ 197 + ++ + L ++L+ + L A++ T + ++ + + T Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 198 ID--RAAIDSAKLNLAYARITAPVSGRV-GLRQVDPGNYVTPSDT--------NGIVVIT 246 I + + + I APVS +V L+ G VT ++T + + V Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 247 QLQPMSVIFTTSEDNLPAILKQVGAGGKLSVTAYNRNNTTPLETGV-LDTLDNQIDTATG 305 +Q + F AI+K V A+ L V LD D G Sbjct: 371 LVQNKDIGFINVG--QNAIIK---------VEAFPYTRYGYLVGKVKNINLDAIEDQRLG 419 Query: 306 TV 307 V Sbjct: 420 LV 421
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 33.2 bits (76), Expect = 5e-04 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 24/123 (19%) Query: 1 MKIALFGATGMIGSRIAAEAARRGHQVTAL-------------SRNPAASGANVQAKAAD 47 MK + GA G IG ++ GHQV + +R + Q D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 48 LFD---PASIAAALEGQDVVASA------YGPKQEEASKVVAVAKAL--VDGARKAGVKR 96 L D + A+ + V S Y + A + L ++G R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 97 VVV 99 ++ Sbjct: 121 LLY 123
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 32.4 bits (73), Expect = 0.007 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%) Query: 562 FNLG-LDPDKAREFHDETLPKDSAKVAHFC--SMCGPHFCSMKITQDVREFAAQQGVSEN 618 F LG + P + R E P + + S CG H + +T + E Q ++ Sbjct: 265 FTLGDMQPGEHRTITVEFCPLKRGRATNIATVSYCGGHKNTASVTTVINEPCVQVSIAGA 324 Query: 619 D 619 D Sbjct: 325 D 325
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 27.5 bits (61), Expect = 0.003 Identities = 9/38 (23%), Positives = 17/38 (44%) Query: 19 GKTGMTGNGGVRNDRSERAAANMTEGDERTRRRTRMMT 56 K+G+ G G+ +D + A GD+R + + Sbjct: 269 KKSGVYGISGISSDFRDLEDAAFKNGDKRAQLALNVFA 306
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.8 bits (106), Expect = 3e-07 Identities = 60/266 (22%), Positives = 95/266 (35%), Gaps = 11/266 (4%) Query: 66 YATGMLVLAPLG----DRFDRRTLILLQIAGLSAALVVAAAAPTLGVLAAASLAIGILAT 121 YA AP+ DRF RR ++L+ +AG + + A AP L VL + GI Sbjct: 52 YALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGA 111 Query: 122 IAQQAVPFAAEIAPPAARGQAVGTVMSGLLLGILLARTAAGFVAEYFGWRAVFAASVAAL 181 A + A+I R + G + + G++ G + + FAA AAL Sbjct: 112 TGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAA--AAL 169 Query: 182 AALAAVIVA-RLPRSSPTSTLPYGKLLASMWQLVRELRGLR--EASMTGGAIFAAFSAFW 238 L + LP S P + + R RG+ A M I Sbjct: 170 NGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVP 229 Query: 239 PVLTLLLAGAPFHLGPQAAGL-FGIVGAAGALAAPY-AGRFADKRGPRAIISLAIALIAA 296 L ++ FH G+ G +LA G A + G R + L + Sbjct: 230 AALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 297 SFAIFALSGASLIGLVIGVIVLDVGV 322 + + A + + I V++ G+ Sbjct: 290 GYILLAFATRGWMAFPIMVLLASGGI 315
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 68.2 bits (166), Expect = 1e-15 Identities = 75/266 (28%), Positives = 119/266 (44%), Gaps = 19/266 (7%) Query: 1 MADHSIKGKTVIIAGGAKNLGGLIARDLAAQGAQAVAIHYNSAASKGAAAETVAAIKAAG 60 M I+GK I G A+ +G +AR LA+QGA A+ YN + + V+++KA Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLE----KVVSSLKAEA 56 Query: 61 ARAVALQADLTAAGAVEKLFVDTVAAIGRPDIAINTVGKVLKKPFVEITEAEYDEMAAVN 120 A A AD+ + A++++ +G DI +N G + +++ E++ +VN Sbjct: 57 RHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVN 116 Query: 121 SKTAFFFLKEAGRHVND--NGKIVTLVTSLLGAFTPFYAAYAGMKAPVEHFTRAAAKEFG 178 S F + +++ D +G IVT+ ++ G AAYA KA FT+ E Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 179 ARGISVTAVGPGPMDTPFFYPAEGADAVAYHKTAAALSPFSKTGL--------TDIGDVV 230 I V PG +T + + A +L F KTG+ +DI D V Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETF-KTGIPLKKLAKPSDIADAV 235 Query: 231 PFIRHLVSD-GWWITGQTILINGGYT 255 F LVS IT + ++GG T Sbjct: 236 LF---LVSGQAGHITMHNLCVDGGAT 258
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 30.2 bits (68), Expect = 0.019 Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 19/128 (14%) Query: 390 LKAGEEADARTPAA---LRRGRKLVVQIGE----------TFGEKNAPMFVEQLDALRLA 436 L+ E P A L G I + F EKN + ++LD L Sbjct: 127 LEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKE 186 Query: 437 DKLALDLAPVMVYGDDVTHVVTEEGIANLLMCRDADEREHAIRGVAGYTEIGRGRDRRLV 496 K + P + +VT EG + I + E + + LV Sbjct: 187 SKDKFNKIP-----AEKKLIVTSEGAFKYF-SKAYGVPSAYIWEINTEEEGTPEQIKTLV 240 Query: 497 ERLRERGV 504 E+LR+ V Sbjct: 241 EKLRQTKV 248
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 49.1 bits (117), Expect = 2e-08 Identities = 84/376 (22%), Positives = 143/376 (38%), Gaps = 47/376 (12%) Query: 72 PSAQLLATFGTFAAAF-LVRPLGGMVFGPLGDRIGRQRVLAMTMIMMAVGTFAIGLIPSY 130 S + A +G A + L++ V G L DR GR+ VL +++ AV + P Sbjct: 37 HSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL 96 Query: 131 DSIGLLAPVLLLVARLVQGFSTGGEYGGAATFIAEFSTDKRR----GFMGSFLEFGTLIG 186 +L + R+V G TG A +IA+ + R GFM + FG + G Sbjct: 97 W--------VLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAG 147 Query: 187 YVMGAGVVALLTASLSHDALLSWGWRVPFLIAGPLGLIG-LYIRMRLEETPAFKRQAEAR 245 V+G L S PF A L + L L E+ +R+ R Sbjct: 148 PVLGG-----LMGGFSP--------HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRR 194 Query: 246 EAQDKAVPKAHFRRQLARHWRALLLCVGLVLIFNVTDYMALSYLPSYLSSTLHFDEAH-G 304 EA + P A FR A L+ V ++ AL + + H+D G Sbjct: 195 EALN---PLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVI--FGEDRFHWDATTIG 249 Query: 305 LVLILIVMVLMMPMTLATGRLSDAVGRKPVMLAGCVGLFALAIPALLLIRTGETALVFGG 364 + L ++ + + TG ++ +G + ++ +G+ A +LL + F Sbjct: 250 ISLAAFGILHSLAQAMITGPVAARLGERRALM---LGMIADGTGYILLAFATRGWMAFPI 306 Query: 365 LLILGALLSCFTGVMPSALPALFPTEI---RYGALAIGFNVSVSLFGGTT-PLAAAWLVD 420 +++L G+ AL A+ ++ R G L G +++ PL + Sbjct: 307 MVLLA-----SGGIGMPALQAMLSRQVDEERQGQLQ-GSLAALTSLTSIVGPLLFTAIYA 360 Query: 421 ATGNLMMPAYYLMGAA 436 A+ ++ GAA Sbjct: 361 ASITTWNGWAWIAGAA 376 Score = 29.4 bits (66), Expect = 0.037 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 7/99 (7%) Query: 289 LPSYLSSTLHFDEAHGLVLILIVMVLMMPMTLA--TGRLSDAVGRKPVMLAGCVGLFALA 346 LP L +H ++ IL+ + +M A G LSD GR+PV+ V L A Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVL---LVSLAGAA 84 Query: 347 IPALLLIRTGETALVFGGLLILGALLSCFTGVMPSALPA 385 + ++ +++ G ++ G ++ TG + A A Sbjct: 85 VDYAIMATAPFLWVLYIGRIVAG--ITGATGAVAGAYIA 121
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.7 bits (85), Expect = 2e-04 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 52 PLITRELGLS---AADLGLLTSLYFLGFACAQIPAGVLLDRYGPRRVSAALLLVAAAGAW 108 P + R+L S A G+L +LY L G L DR+G R V L AA Sbjct: 29 PGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYA 88 Query: 109 VFGAAHDIGAMMLGRLLIGV 128 + A + + +GR++ G+ Sbjct: 89 IMATAPFLWVLYIGRIVAGI 108
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 34.4 bits (79), Expect = 3e-04 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 12/140 (8%) Query: 43 TEDELREAQRLRHSVFAEEMGAHVSGPAGLDVDPFD-PYCDHLLVRDLDTLKVVGTYRVL 101 +E + E LR F + + V G++ D +D +L +T V+ + R + Sbjct: 13 SETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGIKDNT--VICSLRFI 70 Query: 102 PPHQAARVGRLYAEGEFDLSRLTHLRSKMVEVGRSCVHRDY------RSGAVIMALWGGL 155 + + + +E R V + + L+ + Sbjct: 71 ETKYPNMITGTFFP---YFKEINIPEGNYLESSRFFVDKSRAKDILGNEYPISSMLFLSM 127 Query: 156 GTYMLQNGYETMLGCASVSM 175 Y GY+ + S M Sbjct: 128 INYSKDKGYDGIYTIVSHPM 147
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.4 bits (68), Expect = 0.031 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 213 RTEAPPRTASIVADLDALERFGWHDDAWLRARASLDLAHAPVSIYEVHPESWLRVAAEGN 272 + RT + A L+A RF D +L +A L + A Y + LRV EG Sbjct: 754 AVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRA--ANGLRVRDEGG 811 Query: 273 RSA 275 S Sbjct: 812 SSV 814
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.011 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Query: 376 SYNVYRNGNKVGSS-TSTAYTDAGLIAGTAYSYTVTEIDPSLGESA 420 +Y +YRN ++ S T T Y D L G Y+Y V ++ GESA Sbjct: 1260 TYTIYRNNTQIASGVTETTYRDPDLATGF-YTYGV-KVVYPNGESA 1303
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 4e-20 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 4/143 (2%) Query: 1 MSRQKVVLIYLIEDDEVQARCYAAILQHAGYSVRVLPDGERALREIQRAAPDLIVLDRRL 60 M+ +++ +DD L AGY VR+ + R I DL+V D + Sbjct: 1 MTGATILVA---DDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVM 57 Query: 61 PDIDGLEIIAWVRERCAPLPILVLTNAVLETDLVEALEAGADDYLIKPPREREFVARV-N 119 PD + +++ +++ LP+LV++ ++A E GA DYL KP E + + Sbjct: 58 PDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 120 ALRRRASISKQFEGTIEIGGYRI 142 AL + E + G + Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPLV 140
>PF03895#Serum resistance protein DsrA. Length = 79 Score = 39.4 bits (92), Expect = 4e-06 Identities = 21/77 (27%), Positives = 40/77 (51%) Query: 1014 VARAAYGGIAAATALTMIPEVDKDKTIAVGIGGGTYRGYQAVALGATARITENIKVRAGV 1073 +++ G+A +AL+M+ + + +V G YR A+A+G +RIT+ +AGV Sbjct: 1 LSKELQTGLANQSALSMLVQPNGVGKTSVSAAVGGYRDKTALAIGVGSRITDRFTAKAGV 60 Query: 1074 GMSSGGTTAGIGASMQW 1090 ++ GAS+ + Sbjct: 61 AFNTYNGGMSYGASVGY 77
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 127 bits (321), Expect = 2e-37 Identities = 68/151 (45%), Positives = 95/151 (62%), Gaps = 10/151 (6%) Query: 87 FQCGEPAQPVAQQPQPAPAAAPAAEPIRLNADAMFAFDRADAASMTEQGRQQLSQLAQRL 146 F GE A VA P PAPA + L +D +F F++A + +G+ L QL +L Sbjct: 191 FGQGEAAPVVA--PAPAPAPEVQTKHFTLKSDVLFNFNKAT---LKPEGQAALDQLYSQL 245 Query: 147 TDRHAQTVSIV--GYTDRLGSDAYNRQLSQARAKTVGDYLIAAGVPADSVHAEGRGASDP 204 ++ + S+V GYTDR+GSDAYN+ LS+ RA++V DYLI+ G+PAD + A G G S+P Sbjct: 246 SNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNP 305 Query: 205 LV--QCDQ-RERAALIACLAPNRRVEVVAAG 232 + CD ++RAALI CLAP+RRVE+ G Sbjct: 306 VTGNTCDNVKQRAALIDCLAPDRRVEIEVKG 336
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.2 bits (94), Expect = 1e-05 Identities = 59/353 (16%), Positives = 120/353 (33%), Gaps = 55/353 (15%) Query: 27 VDTQMFSLVIPALLTAWGIGKGQAGLIGGATLAAGAIGGLLAGMIADRFGRVRALQITVC 86 ++ + ++ +P + + + A + +IG + G ++D+ G R L + Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 87 WFSLFTFLSAFAQNFEQLLVL-KTLQGLGFGGEWTAGAVLLSETIRARHRGKAMGIVQSA 145 + + +F LL++ + +QG G V+++ I +RGKA G++ S Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 146 WGFGWGGAVLLYTLVFSWLPPEWAWRVLFAIGVLPALLVLYIRRAIPEPPRDDAR----- 200 G G + ++ ++ W L I ++ + V ++ + + + R Sbjct: 148 VAMGEGVGPAIGGMIAHYI----HWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKG 203 Query: 201 ----------------------VAVSTSAAAAQTAPARASAKSIFDPSV------LRMTI 232 + VS + R DP + + + Sbjct: 204 IILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVL 263 Query: 233 VGGLIGVGAHGGYHAITTWLPTYLKTERHLSVLGTG------AYLAVIIVAFIIGCMTSA 286 GG+I G + +P +K LS G ++VII +I G Sbjct: 264 CGGIIFGTVAG----FVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGG----- 314 Query: 287 YLQDRIGRRRNLMLFSACCVVTVNLYVMLPLDNVAMLLLGFPLGFFAAGIPAT 339 L DR G +L ++V+ L + + F G+ T Sbjct: 315 ILVDRRGPL--YVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFT 365
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 455 bits (1171), Expect = e-150 Identities = 166/808 (20%), Positives = 267/808 (33%), Gaps = 89/808 (11%) Query: 37 GTLYLELVVN-ALSTGRIVPVRYRDGVYYARA----GDLAQASVRTGAQP-------DAL 84 GT +++ +N R V D LA + T + DA Sbjct: 76 GTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDAC 135 Query: 85 VDL-SRLDGVQVEYESAEQRLKLTVPPDWLPRQTLG--SPRLYDRTPAAVSFGLLFNYDV 141 V L S + + + +QRL LT+P ++ + G P L+D A L NY+ Sbjct: 136 VPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINA----GLLNYNF 191 Query: 142 YANSPT--LGTSYTSAWTEQRLFDRWGTVTNTGVYRRDYGGGAGGVGSNRYLRYDTFWRY 199 NS +G + A+ + G Y GS ++ W Sbjct: 192 SGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLE 251 Query: 200 SDQDRLR-TYTAGDVITGALSWSSAVRLGGVSVERDFKVRPDIVTYPLPQFSGQAAVPTA 258 D LR T GD T + + G + D + PD P G A Sbjct: 252 RDIIPLRSRLTLGDGYTQGDIFDG-INFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQ 310 Query: 259 VDLFINGSKTTTGQVNPGPFTMNNVPFINGAGEATVVTTDALGRQVATTIPFYVANTLLQ 318 V + NG V PGPFT+N++ +G+ V +A G T+P+ L + Sbjct: 311 VTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQR 370 Query: 319 KGLSDYSLSAGAMRRDYGIRSFSYGKFAASGTARHGLTDYLTLEGHVEGGERFALGGLGF 378 +G + YS++AG R + T HGL T+ G + +R+ G Sbjct: 371 EGHTRYSITAGEYRSGNAQQE---KPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGI 427 Query: 379 DLGIGMFGVLGVAATQSRLAGASGRQY---------------------AFGYSYASQRF- 416 +G G L V TQ+ Q+ GY Y++ + Sbjct: 428 GKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYF 487 Query: 417 SVSLQRIQRTNGFRDLS--------VYDLPANVAYRLVRSSTQATGALNLGALG----GT 464 + + R NG+ + R Q T LG Sbjct: 488 NFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSG 547 Query: 465 LGAGYFDVRGADGARTRIANLSYTRPLWRRATLYASVNKTVGEHGVAAQLQLIV--PLG- 521 Y+ D N ++ W TL S+ K + G L L V P Sbjct: 548 SHQTYWGTSNVDEQFQAGLNTAFEDINW---TLSYSLTKNAWQKGRDQMLALNVNIPFSH 604 Query: 522 ----------EPGVVTGALARDANNSFSERVQYSRSVPSDGGLGWNL--AYAGGGSHYQ- 568 + +++ D N + ++ D L +++ YAGGG Sbjct: 605 WLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSG 664 Query: 569 ---QADATWRNRYFQAQGGVYGYGAGRGYARWGEVQGSVVVMDGAVLPANRVDDAFVLID 625 A +R Y A G + + V G V+ V ++D VL+ Sbjct: 665 STGYATLNYRGGYGNANIGYSHSDDIKQL--YYGVSGGVLAHANGVTLGQPLNDTVVLVK 722 Query: 626 TQGRGGVPVRYENQLVGKTDGGGHLLVPWAPSYYAGKYEIDPLDLPSNVRVPIVERRVAV 685 G V ENQ +TD G+ ++P+A Y + +D L NV + V Sbjct: 723 APGAKDAKV--ENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP 780 Query: 686 RDHGGALVTFPIRRIVCAQIALVDAAGRPVAIGSRVLHEESGETALVGWQGETYLEGLSA 745 F R + + +P+ G+ V E S + +V G+ YL G+ Sbjct: 781 TRGAIVRAEFKARVG-IKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPL 839 Query: 746 LNHLRVR--TPDGRTCRATFAADVDAAQ 771 ++V+ + C A + ++ Q Sbjct: 840 AGKVQVKWGEEENAHCVANYQLPPESQQ 867
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 1e-12 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 440 RVLVVDDQEMNRIVLRYQLDALGHHARLCASGDEALRALGTAAYDVVLTDCRMPGMDGIA 499 +LV DD R VL L G+ R+ ++ R + D+V+TD MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 500 LTAAIRAH-PDARVRATPIVGVTALVSDAEHARCVDAGMTLCIGKP----TTLDALERAL 554 L I+ PD P++ ++A + + + G + KP + + RAL Sbjct: 65 LLPRIKKARPD-----LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 555 VE 556 E Sbjct: 120 AE 121
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 102 bits (256), Expect = 2e-25 Identities = 71/331 (21%), Positives = 140/331 (42%), Gaps = 20/331 (6%) Query: 41 AFMEVLDTTIVNVALPHIAGTMSASYDEATWTLTSYLVANGIVLPISGFLGRLLGRKRYF 100 +F VL+ ++NV+LP IA + W T++++ I + G L LG KR Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 101 VLCIVAFTICSFLCGIATDLGQLIVF-RVLQGLFGGGLQPNQQSIILDTF-PPEQRNRAF 158 + I+ S + + L++ R +QG G P +++ + P E R +AF Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGA-GAAAFPALVMVVVARYIPKENRGKAF 141 Query: 159 SISAVAIVVAPVLGPTLGGWITDNFSWRWVFLLNVPIGVLTSLAVIQLVEDPPWKRGRAR 218 + + + +GP +GG I W +LL +P+ +T + V L++ K R + Sbjct: 142 GLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPM--ITIITVPFLMKLLK-KEVRIK 196 Query: 219 GLSIDYIGITLIAIGLGCLQVMLDRGEDEDWFASTFIRTFAVLTVAGLVGATFWLLYAKK 278 G D GI L+++G+ + F +++ +F +++V + + Sbjct: 197 G-HFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTD 245 Query: 279 PVVDLSCLKDRNFALGCVTIATFAVVLYGSAVLVPQLAQQRLGYTAMLAG-LVLSPGALL 337 P VD K+ F +G + + G +VP + + + G +++ PG + Sbjct: 246 PFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMS 305 Query: 338 ITLEIPIVSKLMPYVQTRFLVCFGFLLLAAS 368 + + I L+ +++ G L+ S Sbjct: 306 VIIFGYIGGILVDRRGPLYVLNIGVTFLSVS 336
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 99.5 bits (248), Expect = 6e-25 Identities = 63/414 (15%), Positives = 134/414 (32%), Gaps = 91/414 (21%) Query: 51 KRPGKKPLVVLAIIVVLLLVGAFVW-WFATRNQVSTDDA--YTDGNAITIAPKVSGYVVA 107 + P + ++A ++ LV AF+ V+T + G + I P + V Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109 Query: 108 LAIDDNVYVHRGDLLLVIDQRDYQAQVDAARAQLGLAQAQLDAAQVQLDIA------HVQ 161 + + + V +GD+LL + +A ++ L A+ + Q+ ++ Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169 Query: 162 FPAQYRQAQA---QIEAAQASFRQALAAYERQHAVDARATSQQAIDVADAQRLTADANVA 218 P + ++ + ++ + ++ Q + + +D A+RLT A + Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQ-----KYQKELNLDKKRAERLTVLARIN 224 Query: 219 TARAQA----------------------------RTASLVPQQIRQAQTAVEQRRQQVLQ 250 + ++R ++ +EQ ++L Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILS 284 Query: 251 AQA-----------------------------QLEAAQLALSYCEVRAPSDGWITRRNVQ 281 A+ +L + +RAP + + V Sbjct: 285 AKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVH 344 Query: 282 -LGSFLQAGAALFAIVTPQ---LWVTANFKESQLERMRAGDRVSVSVDAYP---NLELHG 334 G + L IV P+ L VTA + + + G + V+A+P L G Sbjct: 345 TEGGVVTTAETLMVIV-PEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVG 403 Query: 335 HVDSIQLGSGSRFSAFPPENATGNFVKIVQRVPVKIAIDGGLPRDPPLGIGLSV 388 V +I L + + G ++ + G ++ PL G++V Sbjct: 404 KVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGN--KNIPLSSGMAV 448
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 28.6 bits (64), Expect = 0.040 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 99 NGATVMVYGEVAGTIQGSPAPLYQRPRFVDDAQW----DAYAERVDAFARYTRAQGV-RL 153 T + + G + P + + A+ ++ +A+ + Sbjct: 207 KEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTKD 266 Query: 154 GYHHHMGAYVESPADVDRLMASTSDAVGLL 183 G H + A + +P DVD ++A+ + +GL Sbjct: 267 GAHVELAANIGTPKDVDGVLANGGEGIGLY 296
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.015 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 7/42 (16%) Query: 41 LLGDNGAGKSTLIKTLAGVHPPSDGQYLVDGKPVLFDSPKDA 82 L G G GKSTLI TL G+ + D + KD+ Sbjct: 601 LEGTGGIGKSTLINTLVGL------DFFSDT-HFDIGTGKDS 635
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 53.7 bits (129), Expect = 3e-11 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 4 LFSIGFFFAWAAAVAIADCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIGGAV 63 + A+ D +P++L L L ++F + F +L A+IG Sbjct: 134 TLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNL--LGGF-VSLGDAVIGAMA 190 Query: 64 GLVSLFPFFAL-------RVMGAADVKVFAVLGAWCGLPALPRLWVVASVAAGVHALALM 116 G + L+ + MG D K+ A LGAW G ALP + +++S+ + L+ Sbjct: 191 GYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLI 250 Query: 117 LLTR 120 LL Sbjct: 251 LLRN 254
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 138 bits (349), Expect = 2e-37 Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 11/249 (4%) Query: 160 VQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGG----TSSMSVSANI 215 V V+ + E + G+ + +N G T + + +++ G S+ Sbjct: 347 VLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLA 406 Query: 216 PIASAFN-LVVGSATRGLFADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVPVP 274 S+FN + G L+ L ++ +LA P++V L A+F G E+PV Sbjct: 407 SALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTG 466 Query: 275 QSLGT-----ISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPA 329 + +++ K G+ L + P + + L++ E S + S + + Sbjct: 467 SQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAAS-STSSDLGAT 525 Query: 330 LTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKEL 389 TR + V +G GE+ +GGL+D+ + DKVP LGD+P+IG F+ S + + + L Sbjct: 526 FNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNL 585 Query: 390 VIIVTPHLV 398 ++ + P ++ Sbjct: 586 MLFIRPTVI 594
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 5e-05 Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 79 AALRVSHPGLPIVALGSLGEPESALAALRAGVRDFIDFSAPAEDALRITRGLLDHVGDQP 138 ++ + P LP++ + + +A+ A G D++ + + I L +P Sbjct: 67 PRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRP 126 Query: 139 SRH 141 S+ Sbjct: 127 SKL 129
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 31.7 bits (71), Expect = 0.004 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Query: 214 LMNQLKLAPAVRAEIRNDATRIAAAARARQRA-LARPGAPGAAASAGATLAASAAGSNGG 272 MN L A A + R AAA A+++A AA A T A A GS Sbjct: 203 RMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQ--AAIRAANTYAMPANGSVVA 260 Query: 273 AAAGKGAVAGAGASAPGAAATATAAA 298 AAG+G + A +A A A + A A Sbjct: 261 TAAGRGLIQVAQGAASLAQAISDAIA 286
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 297 bits (763), Expect = 3e-98 Identities = 130/475 (27%), Positives = 204/475 (42%), Gaps = 53/475 (11%) Query: 19 ADIVDRVARCMSSFDVEVIRADN-EELSAERTAMRPSLAIISVSMIE-SGAAFLRTWQAE 76 A I + + +S +V N L A L + V M + + L + Sbjct: 13 AAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKA 72 Query: 77 -IGMPVVWVGA--------------ARDHDPSLYPPEYSHILPLDFTCAELRGMISKLAV 121 +PV+ + A A D+ P P + + ++ + +++ Sbjct: 73 RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK--PFDLTELIGIIGRA------LAEPKR 124 Query: 122 QLRAHAAKALEPSTLVAHSDCMQALLQEVDTFADCDTNVLLHGETGVGKERIAQLLHEKH 181 + + + LV S MQ + + + D +++ GE+G GKE +A+ LH+ + Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD-Y 183 Query: 182 SRYGMGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGDL 241 + G FV +N AIP L ES FGH KG+FTGA G FEQA GGTLFLDE+GD+ Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 242 PLYQQVKLLRVLEDGAVLRIGATAPVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVI 301 P+ Q +LLRVL+ G +G P++ D R+VAA+NK L Q + GLFR DLYYRL V+ Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303 Query: 302 ELSIPSLEERGPVDKIALFKSFVASIVGEDRLAALPELPYWLAEAVADSYFPGNVRELRN 361 L +P L +R D L + FV E + E + +PGNVREL N Sbjct: 304 PLRLPPLRDR-AEDIPDLVRHFVQQAEKEGL--DVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 362 LAERVGV------------------------TVRQTGGWDTARLQRLIAHARSAAQPAPA 397 L R+ + + + + + + Sbjct: 361 LVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFG 420 Query: 398 ESAPDVFVDRSKWDMTERNRVIAALDANGWRRQDTAQHLGISRKVLWEKMRKYQI 452 ++ P + E ++AAL A + A LG++R L +K+R+ + Sbjct: 421 DALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.042 Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 9/108 (8%) Query: 119 LFQQKAFWRVIRTASEARAEAVYRDFAKQSETLAVNELQAAKLESQKALTDRQIAVA--- 175 ++A V + + T K E K T++ V Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVT 1126 Query: 176 ------QERASRLQADLSIAREQRAAVATRQKDKLDETVALREQKSER 217 QE++ +Q ARE V ++ T A EQ ++ Sbjct: 1127 SQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 29.0 bits (65), Expect = 0.014 Identities = 19/123 (15%), Positives = 28/123 (22%), Gaps = 9/123 (7%) Query: 83 GAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGAREPRGDGGYGSRESRGDGGYGS 142 SH + G YG + Y + GG G+ Sbjct: 603 SHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGN 662 Query: 143 REPRGDGGYGAREPREPREPRESYGAPQEGASTPSGTQERNGNGNGPVIVTRRRRSLGPT 202 G R YG G S ++ +G V+ +LG Sbjct: 663 SGSTGYATLNYRGG---------YGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQP 713 Query: 203 DGQ 205 Sbjct: 714 LND 716
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.0 bits (70), Expect = 0.010 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 11/111 (9%) Query: 268 LVNTAGMHAKTASNVMTAALFVYMLMQPVFGALSDKIGRR----MSMILFGTGAVIGTVP 323 + N + + V TA + + + V+G LSD++G + +I+ G+VIG V Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99 Query: 324 LMHALGGVTSPLVAFGLIVVALAIVSFYTSISGLIKAEMFPPEVRAMGVGL 374 L+ + +F ++ ++ A P E R GL Sbjct: 100 HSFF------SLLIMARFIQGAGAAAF-PALVMVVVARYIPKENRGKAFGL 143
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 32.1 bits (73), Expect = 9e-04 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 18/148 (12%) Query: 20 LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAA---- 75 L+ +W L +L DL L + L+ L G A +GA A Sbjct: 138 LLLTWVLVALTFIDLDKMLLP--DQLTLPLLWGGLLFNLLGGFVSLGD-AVIGAMAGYLV 194 Query: 76 ----FALGAAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGR 131 + + + GD KL A + W G V + G +G I Sbjct: 195 LWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRN 254 Query: 132 VPRVLAWFAPARGVPYGVALAAGGLLAV 159 ++ +P+G LA G +A+ Sbjct: 255 H-------HQSKPIPFGPYLAIAGWIAL 275
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 143 bits (361), Expect = 4e-39 Identities = 68/283 (24%), Positives = 116/283 (40%), Gaps = 16/283 (5%) Query: 127 VVQTLKPYLRQQEALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGA------- 179 +V + E ++ +L + RP QV + I EV LGI W+ A Sbjct: 322 IVTAAPDVMNDLERVIAQLDIRRP-QVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTN 380 Query: 180 SGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDG--VLDALDQEGLITM 237 SG + G ++ S A S G Y + +L AL + Sbjct: 381 SGLPISTAIAGANQYNKDGTVSSSLAS-ALSSFNGIAAGFYQGNWAMLLTALSSSTKNDI 439 Query: 238 LAEPNLTAISGQTASFLAGGEFPIPVAQDTTGA----ITIQFKPYGVSLDFTPTVLADNR 293 LA P++ + A+F G E P+ TT T++ K G+ L P + + Sbjct: 440 LATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDS 499 Query: 294 ISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLA 353 + L++ EVS + S T+ + R V+ V + SG++ +GGLL SD Sbjct: 500 VLLEIEQEVSSVADAASSTSSDLGA-TFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTAD 558 Query: 354 ELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGE 396 ++P L +PV+G LF S + K +++ + P +++ + Sbjct: 559 KVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYR 601
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 0.001 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 20/165 (12%) Query: 22 GARLVAIVADAASDEVIRNLIADQAMTGAQVARGGIDDAIALMRDLSHGPQHLLVDVSGA 81 GA ++ DAA V+ ++ + + ++ DV Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYD--VRITSNAATLWRWIA--AGDGDLVVTDVV-- 56 Query: 82 AMP----LSDLARLADVCDPSVNVIVIGERNDVGLFRSMLRIGVRDYLVKPL----TVEL 133 MP L R+ P + V+V+ +N G DYL KP + + Sbjct: 57 -MPDENAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 134 VHRALSAADPNAAARAGKAIGFVGARGGVGVTSIAVALARHLADR 178 + RAL+ + + + G S A+ + R Sbjct: 115 IGRALAEPKRRPSKLEDDSQDGMPLVG----RSAAMQEIYRVLAR 155
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.034 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Query: 303 IVISGGTGSGKTTLLNAL---SHFIDSHERIVTIEDAAELQLQQPHVVSL 349 +V+ G G GK+TL+N L F D+H I T +D+ E Q+ L Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYE-QIAGIVAYEL 647
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 31.1 bits (70), Expect = 0.004 Identities = 20/83 (24%), Positives = 32/83 (38%) Query: 54 SVAESALAAGDAELAATLFERALKADPRSLPAQVGLGDAMYQTGELARAGVLYAQAAAAA 113 S+A + +G E A +F+ D +GLG G+ A Y+ A Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 114 PDDPRAQLGLARVALRERHLDDA 136 +PR A L++ L +A Sbjct: 101 IKEPRFPFHAAECLLQKGELAEA 123
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 32.1 bits (72), Expect = 0.004 Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 4/132 (3%) Query: 23 RVAAARNELQNAADAAALAGAASLEAGAGAPAWAAAASAAAAALSLNASDGAALSSGDVQ 82 A A+ + + A A AA+ A PA + + AA + + GAA + + Sbjct: 226 AAAEAKRKAEEQARQQAAIRAANTYA---MPANGSVVATAAGRGLIQVAQGAASLAQAIS 282 Query: 83 TGYWNVTGVPAGLEPTTLAPGEYDVPAVQATVTRAPNQNGGPLSLLMGGLLGLVGTPAAA 142 V G P+ +A G + T + +Q + +G +G P + Sbjct: 283 DAI-AVLGRVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSV 341 Query: 143 TAVAVAGAPATV 154 AVA A TV Sbjct: 342 NLNAVAKASGTV 353
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 117 bits (295), Expect = 5e-35 Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 4/210 (1%) Query: 1 MARKTREESLNTKNRILDAAELVLLEKGVGQTAMADIAEAAGMSRGAVYGHFNGKIEVCV 60 MARKT++E+ T+ ILD A + ++GV T++ +IA+AAG++RGA+Y HF K ++ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AVCDRAFSRAVEGFDLSDERPA---LATLRLAASHYLHQCGEPGSMQRVLEILYMKCEQS 117 + + + S E + L+ LR H L + ++EI++ KCE Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 118 EENAPLMRRRALYELQTLRIAKALLRRAVAAGELDASLDVHLAGVYLLSLLEGIFGSMIW 177 E A + + + L++ + L+ + A L A L A + + + G+ + ++ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 178 TTRLRGDRWRDAEAMLDAGVDTLRASPALR 207 + D ++A + ++ P LR Sbjct: 181 APQSF-DLKKEARDYVAILLEMYLLCPTLR 209
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.8 bits (93), Expect = 1e-05 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 5/133 (3%) Query: 67 EVRARVAGIVTARTYEEGQEVKRGAVLFRIDPAPFKAARDAAAGALEKAQAAHLAALDKR 126 E++ IV +EG+ V++G VL ++ +A +L +A+ Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 127 RRYDELVRDRAVSERDHTEALADERQAKAAVASARAELA-----RAQLQLDYATVTAPID 181 R + + E + + + + + + Q +L+ A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 182 GRARRALVTEGAL 194 R E Sbjct: 218 TVLARINRYENLS 230 Score = 34.8 bits (80), Expect = 5e-04 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 10/100 (10%) Query: 102 KAARDAAAGALEKAQAAHLAALDKRRRYDELVRDRAVSERDHTEALADERQAKAAVASAR 161 LE+ ++ L+A ++ + +L + E L RQ + Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFK---------NEILDKLRQTTDNIGLLT 315 Query: 162 AELARAQLQLDYATVTAPIDGR-ARRALVTEGALVGQDQA 200 ELA+ + + + + AP+ + + + TEG +V + Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1079 bits (2791), Expect = 0.0 Identities = 516/1032 (50%), Positives = 701/1032 (67%), Gaps = 6/1032 (0%) Query: 1 MARFFIDRPVFAWVISLFIMLGGIFAIRALPVAQYPDIAPPVVSLYATYPGASAQVVEES 60 MA FFI RP+FAWV+++ +M+ G AI LPVAQYP IAPP VS+ A YPGA AQ V+++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTAVIEREMNGVPGLLYTSATS-SAGQASLSLTFKQGVSADLAAVDVQNRLKIVEARLPE 119 VT VIE+ MNG+ L+Y S+TS SAG +++LTF+ G D+A V VQN+L++ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 PVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYASANVLQALRRVEGVGKVQFWGA 179 V++ GIS+EK++ + ++ S++ + ++ +Y ++NV L R+ GVG VQ +GA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 EYAMRIWPDPVKMAALGLTASDIASAVRAHNARVTIGDVGRSAVPDSAPIAATVLADAPL 239 +YAMRIW D + LT D+ + ++ N ++ G +G + + A+++A Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 TTPDAFGAIALRARADGSTLYLRDVARIEFGGNDYNYPSFVNGKTATGMGIKLAPGSNAV 299 P+ FG + LR +DGS + L+DVAR+E GG +YN + +NGK A G+GIKLA G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 ATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKVVTTLVEAGVLVFAVMFLFMQ 359 T K ++A + EL FFP G+K PY+T FV++S+ +VV TL EA +LVF VM+LF+Q Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENVERLM 419 N RATLIPT+ VPV LLGTF + A G+SIN LTMFGMVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 VEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFAFALAVSIGF 479 +E+KLPP EAT K+M QI GA+VGI +VL++VF+PMAFFGG+ G IYRQF+ + ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCATLLKPVADDHHE-KDGFFGWFNRFVARSTHRYTRRVGRVLERPLRW 538 S +AL LTPALCATLLKPV+ +HHE K GFFGWFN S + YT VG++L R+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 539 LVVYGALTAAAALLITKLPAAFLPDEDQGNFMVMVIRPQGTPLAETMQSVRRVEEYVRTH 598 L++Y + A +L +LP++FLP+EDQG F+ M+ P G T + + +V +Y + Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 599 SPSAY--TFALGGYNLYGEGPNGGMIFVTMKDWKERKRARDQVQAIIAEINAHFAGTPNT 656 + F + G++ G+ N GM FV++K W+ER + +A+I + Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 MVFAINMPALPDLGLTGGFDFRLQDRGGLGYGAFVAAREKLLAEGRKDPV-LTDLMFAGT 715 V NMPA+ +LG GFDF L D+ GLG+ A AR +LL + P L + G Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 QDAPQLKLDIDRAKASALGVSMEEINATLAVMFGSDYIGDFMHGSQVRRVIVQADGRHRL 775 +D Q KL++D+ KA ALGVS+ +IN T++ G Y+ DF+ +V+++ VQAD + R+ Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 DAADVTKLRVRNAKGEMVPLAAFATLHWTMGPPQLTRYNGFPSFTINGAASAGHSSGEAM 835 DV KL VR+A GEMVP +AF T HW G P+L RYNG PS I G A+ G SSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 AAIERIASTLPAGTGYAWSGQSYEERLSGAQAPMLFALSVLVVFLALAALYESWSIPFAV 895 A +E +AS LPAG GY W+G SY+ERLSG QAP L A+S +VVFL LAALYESWSIP +V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 MLVVPLGVIGAVAGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQR-MSLA 954 MLVVPLG++G + TL ND+YF VGL+ TIGLSAKNAILIVE AKDL+ + + Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 DAALEAARLRLRPIVMTSLAFGVGVLPLAFATGAASGAQIAIGTGVLGGVISATLFAIFL 1014 +A L A R+RLRPI+MTSLAF +GVLPLA + GA SGAQ A+G GV+GG++SATL AIF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1015 VPLFFVCVGRVF 1026 VP+FFV + R F Sbjct: 1021 VPVFFVVIRRCF 1032
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.002 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 2/104 (1%) Query: 379 APRLTLPIFAGGRNRANLDVADARKHIAVAEYEKTIQTAFREV--ADALAARDQIDAQLA 436 P L LP +N + +V I Q +E+ A R + A++ Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 437 AQQAVYGADAERLRLAQRRYDSGVASYLELLDAQRSTFESGQEL 480 + + + RL + +L+ + E+ EL Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNEL 268
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 678 bits (1751), Expect = 0.0 Identities = 227/851 (26%), Positives = 353/851 (41%), Gaps = 60/851 (7%) Query: 2 RIRHSFLCVFMLAAGSHARATEFNASFLSIDGRNDVDLSQFAQADYTLPGTYLLDVQVND 61 +R C F A + FN FL+ D + DLS+F PGTY +D+ +N+ Sbjct: 27 FVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNN 86 Query: 62 VFFGLQPIEFVAHDDGQGARACVAPELVAQFGLKKSLVENLPRTMGGRCADLASL-DGVT 120 + + + F D QG C+ +A GL + V + C L S+ T Sbjct: 87 GYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDAT 146 Query: 121 IRYQKGEGRLKITIAQAALEFADASYLPPERWSDGVDGAMLDYRVFANANHAFGRGAQQN 180 + G+ RL +TI QA + Y+PPE W G++ +L+Y + N R + Sbjct: 147 AQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYN--FSGNSVQNRIGGNS 204 Query: 181 NAVQAYGTIGANWGAWRFRGDYQAQ-TRAGGAVYAERAFRFNQLYAYRALPSIRSTLSFG 239 + G N GAWR R + + + ++ ++ + R + +RS L+ G Sbjct: 205 HYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLG 264 Query: 240 EIYVDSDIFSTFSMSGVAMKSDDRMLPPSMRGYAPLVTGVARTNAIVKVMQDSRVLYMTK 299 + Y DIF + G + SDD MLP S RG+AP++ G+AR A V + Q+ +Y + Sbjct: 265 DGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNST 324 Query: 300 VSPGAFALSNLN-TSVQGTLDVVVEEEDGTVQRFQVATASVPFLAREGQLRYKTAIGQPR 358 V PG F ++++ G L V ++E DG+ Q F V +SVP L REG RY G+ R Sbjct: 325 VPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYR 384 Query: 359 TFGGAGITPWFGFAEAAYGLPFDVTVYGGLIAASGYTSVAFGVGRDFGRFGALSADVTHA 418 + P F + +GLP T+YGG A Y + FG+G++ G GALS D+T A Sbjct: 385 SGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQA 444 Query: 419 RATLWWNGRTKRGNSYRINYSKHVDALDADVRFFGYRFSERDYTNFQQFSGDPTASGL-- 476 +TL + G S R Y+K ++ +++ GYR+S Y NF + Sbjct: 445 NSTL-PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIE 503 Query: 477 -------------------ANGKQRYSAMLSKRFGDTST-YFSYDQTTYW-ARPSDRRIG 515 N + + ++++ G TST Y S TYW D + Sbjct: 504 TQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQ 563 Query: 516 VTLTRAFSLGALKSVNLGFSAFRTQGAGGGGNQVSLTATLPLGER-----------QTLT 564 L AF + L +S + G ++L +P + + Sbjct: 564 AGLNTAFEDI---NWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASAS 620 Query: 565 SSVSAGEGGTSVNAGYLYDGA---NGRTYQLYGGTTDGRASANASLRQRTPSYQ-----L 616 S+S G N +Y N +Y + G G + S T +Y+ Sbjct: 621 YSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNA 680 Query: 617 TAQASTVANAYASASLEVDGSFVATRYGVTAHANGNAGDTRLLVSTDGVPGVPLS-GSYA 675 S ++ V G +A GVT DT +LV G + + Sbjct: 681 NIGYS-HSDDIKQLYYGVSGGVLAHANGVTLGQPL--NDTVVLVKAPGAKDAKVENQTGV 737 Query: 676 RTNARGYAVIDGVSPYNVYDATVSVEKLGLDTDVTNPIQRTVLTDGAIGYIRFNAARGRN 735 RT+ RGYAV+ + Y + L + D+ N + V T GAI F A G Sbjct: 738 RTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIK 797 Query: 736 VFVTLTGDGGAPVPFGASVQDAATGKELGIVGEAGAAYLTQVQPRAKLVVRAGAKTICT- 794 + +TLT + P+PFGA V + + GIV + G YL+ + K+ V+ G + Sbjct: 798 LLMTLTHNNK-PLPFGAMVTS-ESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHC 855 Query: 795 --PAALPDTLQ 803 LP Q Sbjct: 856 VANYQLPPESQ 866
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 123 bits (310), Expect = 2e-36 Identities = 81/252 (32%), Positives = 118/252 (46%), Gaps = 15/252 (5%) Query: 9 GRSFLVTGASSGIGRAAAVALRGCGARVVAAARNARELERLAHETGC-----EPLELDVG 63 G+ +TGA+ GIG A A L GA + A N +LE++ E DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 64 CDASVRAALSS-ERMRDAFDGLINCAGVTSLAAAIDTTADEFDRVMAVNARGAMLVARHV 122 A++ + ER D L+N AGV + +E++ +VN+ G +R V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 123 ARAMIRAGRGGSIVNVSSQAALVALPSHLAYCASKAALDAMTRVLCVELGPHGIRVNSVN 182 ++ M R GSIV V S A V S AY +SKAA T+ L +EL + IR N V+ Sbjct: 128 SKYM-MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 183 PTVTLTPMAERAWSDPHASGPMLA--------AIPLGRFARVADVVAPILFLSSDAAAMV 234 P T T M W+D + + ++ IPL + A+ +D+ +LFL S A + Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 235 SGVALPVDGGYT 246 + L VDGG T Sbjct: 247 TMHNLCVDGGAT 258
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 57.4 bits (138), Expect = 6e-12 Identities = 51/186 (27%), Positives = 73/186 (39%), Gaps = 24/186 (12%) Query: 78 RALVSQWSKYYFNLAASAGFAAALLLGRPLDMAPQRMRVALRGGMPVALLFEADALRPAQ 137 + L+S W+++Y L A L + LD++P+ VA F D Sbjct: 89 KPLISLWAQWYIGLMVPPLMLALLTQEKALDVSPEHFHAEFHETGRVA-CFWVDVCEDKN 147 Query: 138 AEPAS---RYAALVDH-LRATIDTLAALAKLSPRVLWANAGNLLD-YLFEQCAHAPRAGA 192 A P S R L+ L + L A +++ +++W+N G L++ YL E G Sbjct: 148 ATPHSPQHRMETLISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEM---KQLLGE 204 Query: 193 DA------AWLFGPVDSRGEANPLRLPVRRVKPCSARLPDPFRARRVCCLRNEIPGEDQL 246 A F + GE NPL V L D RR CC R +P Q Sbjct: 205 ATVESLRHALFFEKTLTNGEDNPLWRTV--------VLRDGLLVRRTCCQRYRLPDVQQ- 255 Query: 247 CGSCPL 252 CG C L Sbjct: 256 CGDCTL 261
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 113 bits (285), Expect = 2e-31 Identities = 77/264 (29%), Positives = 112/264 (42%), Gaps = 15/264 (5%) Query: 59 PARIVVLEFMFAEDLAALDITPVGMADPAYYPIWIGYDDARFARVSDVGTRQEPSLEAIA 118 P RIV LE++ E L AL I P G+AD Y +W+ + V DVG R EP+LE + Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVS-EPPLPDSVIDVGLRTEPNLELLT 93 Query: 119 AAKPDLILGVGLRHAPIFDALSWIAPTVLFKYSPNYIEDGRQVTQYDWARAILRTIGCLT 178 KP ++ + P + L+ IAP F +S DG+Q AR L + L Sbjct: 94 EMKPSFMVW-SAGYGPSPEMLARIAPGRGFNFS-----DGKQ--PLAMARKSLTEMADLL 145 Query: 179 GRARDARAVQARVDAGLARDARRIAAAGRAGERVAWLQELGLPDRYWAFTGNSASAGIAR 238 A A+ + + R + G R L L P F NS I Sbjct: 146 NLQSAAETHLAQYEDFIRSMKPRFV---KRGARPLLLTTLIDPRHMLVFGPNSLFQEILD 202 Query: 239 ALGLE-PWPGEPTREGTAYVTSEDLLKQPDLAVLFVSATEPGVPLDAKLDSSIWRFVPAR 297 G+ W GE G+ V+ + L D+ VL +DA + + +W+ +P Sbjct: 203 EYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKD-MDALMATPLWQAMPFV 261 Query: 298 RAGRVALVERNIWGFGGPMSALRL 321 RAGR V +W +G +SA+ Sbjct: 262 RAGRFQRVP-AVWFYGATLSAMHF 284
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 42.9 bits (101), Expect = 1e-06 Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 14/171 (8%) Query: 3 AAYPFSALIGQ-AALQQALLLVA-VDPGLGGVLVSGPRGTAKSTAARALAELLP--EGRF 58 + L+G+ AA+Q+ ++A + ++++G GT K ARAL + G F Sbjct: 132 DSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPF 191 Query: 59 VTLPLSASDEQVTGSLDLASALADNT--VRFSPGLVARAHLGVLYVDEINLLPDALVDAL 116 V + ++A + S T S G +A G L++DEI +P L Sbjct: 192 VAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRL 251 Query: 117 LDAAASGVNTVERDGVSHSHAARFALVGTMNP------EEGELRPQLLDRF 161 L G G + +V N +G R L R Sbjct: 252 LRVLQQG--EYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 29.5 bits (65), Expect = 0.027 Identities = 25/63 (39%), Positives = 28/63 (44%) Query: 147 ADGATPAAIAGALVARGFGPSAMSVFEHLGGPLERRLDARADAWRDARAAALNVVAIECR 206 A GAT A GA VA G G A V GPL + L A + A A + VAI R Sbjct: 74 AIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGAR 133 Query: 207 ACA 209 A Sbjct: 134 AST 136
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.0 bits (67), Expect = 0.008 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 46 RAELVVNTAELDLDEIVALLARAHGKGQDVARVHSG-----DPSLYGAIGEQIRRLAA 98 R EL TAEL + ++ H +H D +LYG E+I + +A Sbjct: 154 REELAELTAELKIYSVIQAEINKHLSSSGTINIHDKSINLMDKNLYGYTDEEIFKASA 211
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 87.0 bits (215), Expect = 2e-22 Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 10/187 (5%) Query: 1 MTGKRILVTGAGSGFGREVALRLAAKGHCVIAGVQITE----LSAEAARRGLALDAVKLD 56 + GK +TGA G G VA LA++G + A E + + +A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 57 VT-CARERAQAARWD-----VDVLLNNAGAGEAGALVDLPVDIVRELFETNVFGPLELTQ 110 V A AR + +D+L+N AG G + L + F N G ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 111 QVARGMIARGRGRIVFVSSIAGLITGAYTGAYCASKHALEAIAEAMHLELAAHGVQIAVV 170 V++ M+ R G IV V S + AY +SK A + + LELA + ++ +V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 171 NPGPYRT 177 +PG T Sbjct: 186 SPGSTET 192
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 403 bits (1037), Expect = e-144 Identities = 145/310 (46%), Positives = 192/310 (61%), Gaps = 13/310 (4%) Query: 2 RIVIALGGNALLQRNQPMTEVQQRENVKIAVAQIAQ-IAPGNELVIAHGNGPQVGLLALQ 60 R+VIALGGNAL QR Q + + +NV+ QIA+ IA G E+VI HGNGPQVG L L Sbjct: 4 RVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLH 63 Query: 61 ---GAAYPAVAPYPLDVLGAQTEGMIGYLIEQEMGNLLPP---DAPFATLLTQVEVDPAD 114 G A + P+DV GA ++G IGY+I+Q + N L + T++TQ VD D Sbjct: 64 MDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKND 123 Query: 115 PAFEHPTKPIGPVYSRDEAERLALEKGWHIAPD-GDKFRRVVPSPRPRRIFEIRPVKWLL 173 PAF++PTKP+GP Y + A+RLA EKGW + D G +RRVVPSP P+ E +K L+ Sbjct: 124 PAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKLV 183 Query: 174 EKGTIVICAGGGGIPTRYDANGKLSGVEAVIDKDLCASLLARELSADLLVIATDVDGAYL 233 E+G IVI +GGGG+P + +G++ GVEAVIDKDL LA E++AD+ +I TDV+GA L Sbjct: 184 ERGVIVIASGGGGVPVILE-DGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAAL 242 Query: 234 DWGKPTQALIEAAHPDELERL----GFAAGSMGPKVQAAIEFARQTGHDAVIGSLADIVA 289 +G + + +EL + F AGSMGPKV AAI F G A+I L V Sbjct: 243 YYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVE 302 Query: 290 IAEGRAGTRV 299 EG+ GT+V Sbjct: 303 ALEGKTGTQV 312
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 515 bits (1327), Expect = 0.0 Identities = 130/423 (30%), Positives = 227/423 (53%), Gaps = 21/423 (4%) Query: 1 MSQAIPQVGVHSEVGKLRKVLVCSPGLAHQRLTPSNCDELLFDDVMWVNQAKRDHFDFVS 60 M + + + + SE+G+L+KVL+ PG + LTP LFDD+ ++ A+++H F S Sbjct: 1 MEEYLNPINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFAS 60 Query: 61 KMRERGVEVLEMHNLLTETVQNPAALK------WILDRKITPDNVGIGLVDEVRAWLEGL 114 ++ VE+ + +L++E + + AL+ +IL+ +I D ++ ++ + L Sbjct: 61 ILKNNLVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFT----INLLKDYFSSL 116 Query: 115 EPRALAEFLIGGVAASDIAGAERSKVLTLFRDYLGKSSFVLPPLPNMMFTRDTSCWIYGG 174 + +I GV ++ S + G + F++ P+PN++FTRD I G Sbjct: 117 TIDNMISKMISGVVTEELKNYTSSLDDLV----NGANLFIIDPMPNVLFTRDPFASIGNG 172 Query: 175 VTLNPMHWPARRQETLLVAAVYKFHPAFTDAKFDVWYGDPDRDHGMATLEGGDVMPIGRG 234 VT+N M R++ET+ ++K+HP + +W + A+LEGGD + + +G Sbjct: 173 VTINKMFTKVRQRETIFAEYIFKYHPVYK-ENVPIWLNRWE----EASLEGGDELVLNKG 227 Query: 235 VVLVGMGERTSRQAVGQLAQALFA-KGAAERVIVAGLPNSRASMHLDTVFSFCDRDLVTV 293 ++++G+ ERT ++V +LA +LF K + + ++ +P +R+ MHLDTVF+ D + T Sbjct: 228 LLVIGISERTEAKSVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTS 287 Query: 294 FPEVVNRIVPFTLRPGGDARYGIDIEREDKPFVDVVAQALGLKSLRVVETGGNDFAAERE 353 F + L + I I++E DV++ LG K + GG+ RE Sbjct: 288 FTSDDMYFSIYVLTYNPSSSK-IHIKKEKARIKDVLSFYLGRKIDIIKCAGGDLIHGARE 346 Query: 354 QWDDGNNMVCIEPGVVVGYDRNTYTNTLLRKAGVEVITIGSSELGRGRGGGHCMTCPVLR 413 QW+DG N++ I PG ++ Y RN TN L + G++V I SSEL RGRGG CM+ P++R Sbjct: 347 QWNDGANVLAIAPGEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIR 406 Query: 414 DPV 416 + + Sbjct: 407 EDI 409
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 92.9 bits (231), Expect = 3e-23 Identities = 90/380 (23%), Positives = 146/380 (38%), Gaps = 64/380 (16%) Query: 32 ASTAHAQSSVVLYGLIDTSITYANNQRTHGAGSPGSPGWAVTSGALNASRWGLRGREDLG 91 A A + V LYG I + + + +GA + T S+ G +G+EDLG Sbjct: 12 ALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVE--TGTGIVDLGSKIGFKGQEDLG 69 Query: 92 DGVSAIFALENGFSGASGALSQKGVDMFGRQAWIGLKSKEGGALTLGRQYDLILDF--VT 149 +G+ AI+ +E AS A + G RQ++IGLK G L +GR ++ D + Sbjct: 70 NGLKAIWQVE---QKASIAGTDSG--WGNRQSFIGLK-GGFGKLRVGRLNSVLKDTGDIN 123 Query: 150 PLGASGPGWGGNLAVHPYDNDDSNRNIRINNAVKYTSPTYRGWTLGAMYGFSNTAGPFGN 209 P + G N P R I +V+Y SP + G + Y ++ AG N Sbjct: 124 PWDSKSDYLGVNKIAEP-----EARLI----SVRYDSPEFAGLSGSVQYALNDNAG-RHN 173 Query: 210 NAAWSAGLSYANGPLKLGAGYLRINRNPNAANANGALSTTDGSATITGGSQQIWAVAGRY 269 + ++ AG +Y NG + G + QI + Y Sbjct: 174 SESYHAGFNYKNGGFFVQYGGAYKRH-------------HQVQENVNIEKYQIHRLVSGY 220 Query: 270 -AFGPHSIGAAWSHSATDRVSGVLQGGSIAKLDGNSLVFDNFTLDGRY-VVTPRLSLAAA 327 ++ A A L + + + TL R+ VTPR+S A Sbjct: 221 DNDALYASVAVQQQDAK------LVEENYSHNSQTEVA---ATLAYRFGNVTPRVSYAHG 271 Query: 328 YTYTMGRFDARSGETRPKWNHMVAQADYAFSIRTDAYLAAVYQRVSGGNGIPAFNATIWT 387 + + + + ++ +V A+Y FS RT A ++A + + G G F +T Sbjct: 272 FKGSFDATNYNN-----DYDQVVVGAEYDFSKRTSALVSAGWLQ--EGKGESKFVSTA-- 322 Query: 388 LTPSANGNQVVVALGLRHRF 407 +GLRH+F Sbjct: 323 -----------GGVGLRHKF 331
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 28.6 bits (64), Expect = 0.039 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%) Query: 263 PTSGAAFMVAEWLRAQRDDGRTIVFIAPDEGHRYADTVYDDAWLRGQG 310 +G + R Q +DG ++ IAP E Y+ + G Sbjct: 334 KCAGGDLIHGA--REQWNDGANVLAIAPGEIIAYSRNHVTNKLFEENG 379
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 28.3 bits (63), Expect = 0.020 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 17/95 (17%) Query: 21 RSFLSELTRHLRG--FLRKRIPQFDADIEDLVQEILLAVHNARHTYRADEPLTAWVHAIA 78 SFLS + HL+ +L + +D ILLA+ RH + P T + Sbjct: 209 HSFLSHSSTHLKTSPWLSESFSFYD---------ILLALSWKRHQFSVTIPQTRIFQQLK 259 Query: 79 RYKLMDFFRTRARREALHDPLDDHTDI-FSEPDDD 112 + + D + +R D ++ + + FS D D Sbjct: 260 KLFVYDSLKKSSR-----DIIETYCQLNFSAGDLD 289
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 92.2 bits (229), Expect = 4e-23 Identities = 92/377 (24%), Positives = 136/377 (36%), Gaps = 57/377 (15%) Query: 1 MKKLLIALPLAAAATTHAQSSVTLYGVLEDGVDYVSNVQGKHL----VQLASGV-TAGSR 55 MKK LIAL LAA A + VTLYG ++ GV+ +V V+ +G+ GS+ Sbjct: 1 MKKSLIALTLAALPVA-AMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSK 59 Query: 56 WGVRGTEDLGGGLSAIFRLESGFDINSGRLGSGLAFSRNAYVGVGDAKLGTLTLGRQWDS 115 G +G EDLG GL AI+++E I G G +R +++G+ G L +GR Sbjct: 60 IGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWG---NRQSFIGLK-GGFGKLRVGRLNSV 115 Query: 116 IVDY--VEPFTLNGNI-GGYYFAHPNDMDNTDNGFPISNAVKYRSPTIAGFTFGGLYAFG 172 + D + P+ + G A P IS V+Y SP AG + YA Sbjct: 116 LKDTGDINPWDSKSDYLGVNKIAEPEA-------RLIS--VRYDSPEFAGLSGSVQYALN 166 Query: 173 GQPGRFSDNATFSVGANYAAGPVGFGIGYLRINNPGVSTQGYQNYPGFTNAVYGNYLDAA 232 GR ++ ++ G NY G G Y+ + V Sbjct: 167 DNAGR-HNSESYHAGFNYKNGGFFVQYGGA-----------YKRHHQVQENVNIEKYQIH 214 Query: 233 RAQKVFGVGASYQVV---QWLKLLADFTNTNFQQGSAGHDATFQNYELSALVKPTPAVTI 289 R + A Y V Q L + ++ Q AT + + + A Sbjct: 215 RLVSGYDNDALYASVAVQQQDAKLVEENYSHNSQTEVA--ATLAYRFGNVTPRVSYAHGF 272 Query: 290 GAGYTYTTGRDHATNAEPKYHQFNLSVEYALSKRTSVYAMGAFQKAAGDAPVAQIAGFNP 349 + T + Y Q + EY SKRTS + + Sbjct: 273 KGSFDATNYNND-------YDQVVVGAEYDFSKRTSALVSAGWLQEG-----------KG 314 Query: 350 SGNQKQAVGRAGIRHVF 366 G G+RH F Sbjct: 315 ESKFVSTAGGVGLRHKF 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 8e-18 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 13/163 (7%) Query: 3 IYLIEDDEIQAQYYQSMLVEHGWQVKLLLDGERAFREIQRMPPDLIILDRRLPDLDGLEV 62 I + +DD L G+ V++ + +R I DL++ D +PD + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 63 LMWVRKNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATET 122 L ++K ++PVL+++ + A E GA DY+ KP E + + RA Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI----GIIGRALAE 121 Query: 123 RTLSELIEIGPYRIQTSEKVVYFHHEAITLSPKEYEIIELLAR 165 R E + S EI +LAR Sbjct: 122 PKR---------RPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 33.0 bits (75), Expect = 0.005 Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 3/126 (2%) Query: 898 LAPDDADAVLLRAELALDTGDFDEALSQFERLREQRPDAPESYANLIPALAALERRDDAI 957 ++ D + + A +G +++A F+ L + L A+ + D AI Sbjct: 31 ISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI 90 Query: 958 AALQRALELNSKHPGALNNGVQFYLRTQQYDKA---MELAQRYVGAHGELASAHTMCGLV 1014 + ++ K P + + L+ + +A + LAQ + E T + Sbjct: 91 HSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSM 150 Query: 1015 YHNLKA 1020 +K Sbjct: 151 LEAIKL 156
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 274 bits (701), Expect = 5e-89 Identities = 94/439 (21%), Positives = 204/439 (46%), Gaps = 14/439 (3%) Query: 43 SALGLEEASIAPARRAAALIPTVMLALLIVLVLWATFFKIDIIAAGQGKVIPSTTVQQLS 102 + L L E ++ R A ++ L++ + + +++I+A GK+ S +++ Sbjct: 44 AHLELIETPVSRRPRLVAYF---IMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIK 100 Query: 103 TLEGGIVRELLVREGQIVKKGQPLVRLDPVVAQGAVTEQAATREGLMASIARLQAEADGK 162 +E IV+E++V+EG+ V+KG L++L + A+ + ++ R Q + Sbjct: 101 PIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSI 160 Query: 163 ----------ATPLYPAGLKPEIVSEEEHVRAQRAEALNSTIEVLQQQRAAKQAEAADYR 212 Y + E V + ++ + + K+AE Sbjct: 161 ELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVL 220 Query: 213 GRIPQYVNNQHLLDDQIQRMLPLVGVGSVAPNEITNLQRERGNLAAQIITTREGAAQASA 272 RI +Y N + ++ L+ ++A + + + + ++ + Q + Sbjct: 221 ARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIES 280 Query: 273 QIAEASHKIEEKISTFRSEAREELARKQVQLQALEGTLSGKQDILDRTLIRSPVNGIVKT 332 +I A + + F++E ++L + + L L+ ++ ++IR+PV+ V+ Sbjct: 281 EILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQ 340 Query: 333 LYITTIGGVASPGKSVIDIVPTNDSLLIEARIQPQDIAYIRVGDDAKVRITAFDSGALGS 392 L + T GGV + ++++ IVP +D+L + A +Q +DI +I VG +A +++ AF G Sbjct: 341 LKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGY 400 Query: 393 LDAKVELISPDSQADERSGSLYYKVQVRTHSSVVATQVGDLNILPGMVADVDVITGRRTI 452 L KV+ I+ D+ D+R G L + V + + ++T ++ + GM ++ TG R++ Sbjct: 401 LVGKVKNINLDAIEDQRLG-LVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSV 459 Query: 453 MSYILRPIVRGMSRAMSER 471 +SY+L P+ ++ ++ ER Sbjct: 460 ISYLLSPLEESVTESLRER 478
>INTIMIN#Intimin signature. Length = 939 Score = 47.4 bits (112), Expect = 1e-06 Identities = 55/247 (22%), Positives = 86/247 (34%), Gaps = 25/247 (10%) Query: 902 ADGTHSLTASAVDLAGNTSPASSTLPVTVDTINPPPALTLSPLSDTFGSGTSGTNH--DN 959 + +TA A D GN+S + L +TV ++ + ++D TS + Sbjct: 521 GSNVYKVTARAYDRNGNSS-NNVLLTITV--LSNGQVVDQVGVTDFTADKTSAKADGTEA 577 Query: 960 ITSATLPTFNGTAAAGSYVQLYDVTGGTTVSMGSAVADSSGGWTTTLTSPLSGSASGVSH 1019 IT NG A A V V+G +S SA + SG T TL S G Sbjct: 578 ITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQ------ 631 Query: 1020 TLVAVGVDPAGNTSTVSGPDVVVIDNAAAALPGPTMASASDTGASSSDGIT-SNTAPVFT 1078 V V A TS ++ V+ +D A++ T A T A ++ + T V Sbjct: 632 --VVVSAKTAEMTSALNANAVIFVDQTKASI---TEIKADKTTAVANGQDAITYTVKVMK 686 Query: 1079 GTGAEAGALVTIYANGTSVG--HATADASGNYTIQ--SNALGADGRYQITAQQVDIAGNT 1134 G + VT + D +G + S G + + +V Sbjct: 687 GDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGK----SLVSARVSDVAVD 742 Query: 1135 SPSSSVT 1141 + V Sbjct: 743 VKAPEVE 749 Score = 45.4 bits (107), Expect = 4e-06 Identities = 63/362 (17%), Positives = 110/362 (30%), Gaps = 39/362 (10%) Query: 359 GHTVSTIADSNGNYSVQAPGTLAEGNNVFTVQ--AVDKAGNTSGTAQQNVTLDTVAATLP 416 G + + S +Y P + G+NV+ V A D+ GN+S +T+ L Sbjct: 497 GQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSNNVLLTITV------LS 550 Query: 417 APQL-------DHGSDTGASNSDGITRATQPVLTGGGAEPNALVTVYADGVSIGQ----- 464 Q+ D +D ++ +DG T A V V + VS Sbjct: 551 NGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSAN 610 Query: 465 -ATADSLGHYTIHSGVLADGTHQITARQIDIAGNTSALSGAALVTIDTSEPAPANLKLVD 523 A + G T+ L A TSAL+ A++ +D ++ + +K Sbjct: 611 SANTNGSGKATV---TLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADK 667 Query: 524 DTFGLHTAGTPSDGLTKDSRVTISGTASAGDVVTLMD--GATSVGQVTADASGNWTIQTA 581 T D +T +V + VT G S D +G + Sbjct: 668 TTA----VANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLT 723 Query: 582 SLADGTHSLTASAVDLAGNTSPASSTLPVTVDTINPPPALTLSPLSDTFGSGTSGTNHDN 641 S T ++ S + + + + + G+G G Sbjct: 724 -------STTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNI-EIVGTGVKGKLPTV 775 Query: 642 ITSATLPTFNGTAAAGSYVQLYDVTGGTTVSVGSAVADSSGGWTTTLTSPLSGSASGVSH 701 + G Y +V S TTT++ +S ++ Sbjct: 776 WLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISV-ISSDNQTATY 834 Query: 702 TL 703 T+ Sbjct: 835 TI 836 Score = 38.5 bits (89), Expect = 5e-04 Identities = 53/259 (20%), Positives = 91/259 (35%), Gaps = 17/259 (6%) Query: 798 GADGRYQITAQQVDIAGNTSPSSSVTAMTLDTSEPAPVNLHLVDDTFGQGTAGTS--SDN 855 G Y++TA+ D GN+S + +T L S V+ V D T+ + ++ Sbjct: 520 GGSNVYKVTARAYDRNGNSSNNVLLTITVL--SNGQVVDQVGVTDFTADKTSAKADGTEA 577 Query: 856 LTKDSRVTISGTASAGD--VVTLMDGATSVGQVTADASGNWTIQTASLADGTHSLTASAV 913 +T + V +G A A ++ G + +A+ +G+ T +L + Sbjct: 578 ITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKA-TVTLKSDKPGQVVVSA 636 Query: 914 DLAGNTSPASSTLPVTVDTINPPPALTLSPLSDTFGSGTSGTNHDNITSATLPTFNGTAA 973 A TS ++ + VD + T + D IT Sbjct: 637 KTAEMTSALNANAVIFVDQTKASIT-EIKADKTTAVAN----GQDAITYTVKVMKGDKPV 691 Query: 974 AGSYVQLYDVTGGTTVSMGSAVADSSGGWTTTLTSPLSGSASGVSHTLVAVGVDPAGNTS 1033 + V T +S + D++G TLTS G + VS + V VD Sbjct: 692 SNQEVTF--TTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSL-VSARVSDVAVDVK--AP 746 Query: 1034 TVSGPDVVVIDNAAAALPG 1052 V + ID+ + G Sbjct: 747 EVEFFTTLTIDDGNIEIVG 765 Score = 37.4 bits (86), Expect = 0.001 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 8/146 (5%) Query: 1853 ADGTYTFSAVAVDVAGNTSNPGVPVQVVVDTHAAAPSITLGTPYDTFGTGTSGTNSDELT 1912 Y +A A D GN+SN V + + V ++ T + T ++ +T Sbjct: 521 GSNVYKVTARAYDRNGNSSNN-VLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAIT 579 Query: 1913 RNTIPYMYGVAEPGARV--TVVENGNTIGTVNA-DSSTGSYSIQIPPATVDGTYTFQAMQ 1969 GVA+ V +V + +A + +G ++ + Sbjct: 580 YTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVV----S 635 Query: 1970 VDVAGNTSAYSAPNYVTIDTVAATPT 1995 A TSA +A + +D A+ T Sbjct: 636 AKTAEMTSALNANAVIFVDQTKASIT 661
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 113 bits (283), Expect = 4e-31 Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 12/180 (6%) Query: 123 QYQVRF--LGGLAYRGYWADSACRDIAARYADAAGLGVIAVAPCNPSDVAAPLPERVELP 180 Q+ + R ++ R+ V+A AP +V L Sbjct: 163 QWTNNIGDAHTIGTRP-DNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTK---HFTLK 218 Query: 181 TDTLFAFDKGGFEDISADGRRQLGDLVASIKAKILSINHLIVTGYTDRLGSDEHNARLSS 240 +D LF F+K + +G+ L L + + ++V GYTDR+GSD +N LS Sbjct: 219 SDVLFNFNK---ATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSE 275 Query: 241 ERARTVADYMIAEGIPAAKITAVGRGAADPVV--VCNNGEQ-PELIRCLQKNRRVEIRIK 297 RA++V DY+I++GIPA KI+A G G ++PV C+N +Q LI CL +RRVEI +K Sbjct: 276 RRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVK 335
>PF07675#Cleaved Adhesin Length = 1358 Score = 30.8 bits (69), Expect = 0.008 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Query: 181 DYVIADPEPRGGRLAME-RGVTWAARRHDHRF--GAHYPWTLRLTPPQDGAPASVEIDT 236 DY I +PEP G++ + G AR D F G Y +T+R DG VE D+ Sbjct: 472 DYCITNPEPASGKMWIAGDGGNQPARYDDFAFEAGKKYTFTMRRAGMGDGTDMEVEDDS 530
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 53.4 bits (128), Expect = 1e-10 Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 12/203 (5%) Query: 17 ASPLRILFGLTQPLLYLFVLGAALRSGTYAEIGG--YQAYIFPGVVGLSLM----FTAIS 70 A+ +L L +PL+YLF LGA L +GG Y A++ G+V S M F I Sbjct: 30 AALASLLGHLAEPLIYLFGLGAGL-GVMVGRVGGVSYTAFLAAGMVATSAMTAATFETIY 88 Query: 71 AAVGIVHDRQTGLLNALLVSPVRRVDIALGKIGAGALLAWLQALLLLPFSPAIGIGLTAP 130 AA G + ++T A+L + +R DI LG++ A A L + + A+G Sbjct: 89 AAFGRMEGQRT--WEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGY-TQWL 145 Query: 131 RLALLVAAMAFAALAFSALGLALALALPFRSVIVFPVVSNTLLLPMFFLSGGLYPLDLAP 190 L + +A LAF++LG+ + P +F ++ P+ FLSG ++P+D P Sbjct: 146 SLLYALPVIALTGLAFASLGMVVTALAPSYDYFIF--YQTLVITPILFLSGAVFPVDQLP 203 Query: 191 DWIRAAAAFDPAAYGVDLMRGVL 213 + AA F P ++ +DL+R ++ Sbjct: 204 IVFQTAARFLPLSHSIDLIRPIM 226
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.006 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%) Query: 53 ASPSAASAPAASSE--AAPAATTAAAADTPNPGGEK 86 +SP+AA+ A E + A D PGG Sbjct: 388 SSPTAAAGGAGGGEPPKKRDPSAGAGTDPGGPGGGD 423
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.7 bits (85), Expect = 3e-04 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 12/139 (8%) Query: 38 PPAPAISRDEALAELKRVQAALDRIKQQASAATTYKQLDALDESTQALSADVDKLTAALV 97 P +S +E L ++ + Q LD + A +++ Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKEL--NLDKKRAERLTVLARINRYENLS- 230 Query: 98 PTRAQLQAQLDVLGPPPAPGAAPETPAVARQR------ADLNARKTQLDAALKQAADEKE 151 +++LD A + + ++ +L K+QL+ + KE Sbjct: 231 ---RVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKE 287 Query: 152 SLANLTQQYSKLRRSLLRD 170 +TQ + LR Sbjct: 288 EYQLVTQLFKNEILDKLRQ 306 Score = 30.2 bits (68), Expect = 0.037 Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 28/188 (14%) Query: 7 FARRVALIGLLHLLCAALPAAAADLASGASVPPAPAISRDEALAELKRVQAA----LDRI 62 R VA + L+ A + + + A+ S K ++ + I Sbjct: 56 RPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHS-----GRSKEIKPIENSIVKEI 110 Query: 63 K----QQASAATTYKQLDALDESTQALSADVDKLTAALVPTRAQL--------QAQLDVL 110 + +L AL L L A L TR Q+ + L Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL 170 Query: 111 GPPPAPGAAPETPAVAR------QRADLNARKTQLDAALKQAADEKESLANLTQQYSKLR 164 P E + Q + +K Q + L + E+ ++ +Y L Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Query: 165 RSLLRDQL 172 R + + +L Sbjct: 231 R-VEKSRL 237
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 33.2 bits (76), Expect = 0.001 Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 33/120 (27%) Query: 1 MKIAIVG-AGLIGHTIAHLLRETGDYEVVAFD---------------------------- 31 MK + G AG IG ++ L E G +VV D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 32 --RDADALAKLANEGIATQRVDSADAAAIREAVKGFDALVNALPYYLAVNVAAAAKAAGV 89 D + + L G + S A+R +++ A ++ +N+ + + Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADS-NLTGFLNILEGCRHNKI 118
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.2 bits (94), Expect = 1e-05 Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 13/135 (9%) Query: 50 TLARYADTQADAALRATQRELQREQGALTDKADAFSIARNRAQQEYDQAKESLRNWIATR 109 L + A+A TQ L + + + + R Q + + + Sbjct: 123 VLLKLTALGAEADTLKTQSSLLQAR-----------LEQTRYQILSRSIELNKLPELKLP 171 Query: 110 SATGDASRNPDVLARTRRLDELQQAVAGWQRQQDQIADQLDALRKRQDDVGARLAQSRAQ 169 + + + + R L +++ + WQ Q+ Q LD R + V AR+ + Sbjct: 172 DEPYFQNVSEEEVLRLTSL--IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229 Query: 170 AEWRYEQASRRYELV 184 + + L+ Sbjct: 230 SRVEKSRLDDFSSLL 244
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 34.6 bits (79), Expect = 3e-04 Identities = 15/107 (14%), Positives = 40/107 (37%), Gaps = 1/107 (0%) Query: 12 ATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIETAIERLNYRPNQMARGL-KRGRN 70 ++ ++A+ AG + ++ + ++++ S E + R Sbjct: 32 TSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLRE 91 Query: 71 RLLGLLAADLTNPYTVEVLRGVEAACHALGYMPLICHAANELEMERR 117 L+ +L + +T ++ + C +G M ++ A L +E Sbjct: 92 ILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESY 138
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 28.4 bits (63), Expect = 0.027 Identities = 19/123 (15%), Positives = 31/123 (25%), Gaps = 2/123 (1%) Query: 82 VSAPPSASTAVSTARSRLPSPLLLSAPASAPMTARARPSARRGPAPRASMGSVHVAARER 141 + AP + A + L P + P P P P V + + Sbjct: 43 LPAPAQPISVTMVAPADLEPPQAVQPPPEPV--VEPEPEPEPIPEPPKEAPVVIEKPKPK 100 Query: 142 EPSSRRAPGIPAVSEPMREPRSDAQASAEAGDAQRRLPRAPGVAADWRADLDSLGAARPL 201 + + +P AS A R + AA + R L Sbjct: 101 PKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRAL 160 Query: 202 RQA 204 + Sbjct: 161 SRN 163
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 333 bits (855), Expect = e-112 Identities = 124/357 (34%), Positives = 178/357 (49%), Gaps = 42/357 (11%) Query: 145 ERLTTVRSASAKPSGEGLVGGSDAFNAALSALQRVAPSMLPVLLLGESGTGKELFARALH 204 + + G LVG S A L R+ + L +++ GESGTGKEL ARALH Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181 Query: 205 EASARAMGPFVVVDCSGIAETLFESELFGYEKGAFTGASARKPGLVETAQGGTLFLDEIG 264 + R GPFV ++ + I L ESELFG+EKGAFTGA R G E A+GGTLFLDEIG Sbjct: 182 DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 265 DVPLSMQVKLLRLIESGTFRRVGGVEALCADFRLVAATHKPLKAMIGDGRFRPDLYYRIS 324 D+P+ Q +LLR+++ G + VGG + +D R+VAAT+K LK I G FR DLYYR++ Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301 Query: 325 AYPISLPAVRERPGDMPLLVDSILRRIAALGPVAGQHFVVAPDALARLEAYAWPGNIREL 384 P+ LP +R+R D+P LV +++ G +AL ++A+ WPGN+REL Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQQAEKEG---LDVKRFDQEALELMKAHPWPGNVREL 358 Query: 385 RNVLDRACLLTDDGVIRVEHLPDEVAGGARIEPGAPAKLSDDELARIARAFDGTRRAL-- 442 N++ R L VI E + +E+ P A L+ + R+ Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 443 -------------------------------------AERVGMSERTLYRRLRALGI 462 A+ +G++ TL +++R LG+ Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 27.8 bits (61), Expect = 0.023 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 5/97 (5%) Query: 14 LLGKSDEQAATDPAAANQTAADAIKNYISAQGLDTSNLTVAFDGASRTVTLTGSVADLDT 73 LLGK+ +DP AA+ TA ++ ++ G +A +G + V L G+ A D Sbjct: 170 LLGKTAAARLSDPQAASHTAQWLVEESVTPAGEHIYYSYLAENGDN--VDLNGNEAGRDR 227 Query: 74 KAK---VKVAAGNVQGVAGVNDDDLQPDDPQVQYHDV 107 A KV GN A + Q + V Sbjct: 228 SAMRYLSKVQYGNATPAADLYLWTSATPAVQWLFTLV 264
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 40.4 bits (94), Expect = 3e-05 Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 15/192 (7%) Query: 92 KVLVEGLQRAQALSIEEQETQFSCEVMPLEPDHADSAETEALRRAIVSQFDQYVKLNKKI 151 L + L+ A S + + E A A+ E ++ K + Sbjct: 193 AELEKALEGAMNFSTADSAKIKTLEAE-KAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 152 PPEILTSLSGIDEAGRLADTIAAHLPLKLDQKQHILEMFPVIERLEHLLAQLEAEIDILQ 211 E + E + + + + + LE A LE + +L Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE---KAALEAEKADLEHQSQVLN 308 Query: 212 VEKRIRGRVKRQMEKSQREYYLNEQVKAIQKELGEGEEGAD--LEELEKRINAARMPKEA 269 R ++R ++ S+ +Q++A ++L E + ++ + L + ++A+R EA Sbjct: 309 AN---RQSLRRDLDASREAK---KQLEAEHQKLEEQNKISEASRQSLRRDLDASR---EA 359 Query: 270 KKKADAELKKLK 281 KK+ +AE +KL+ Sbjct: 360 KKQLEAEHQKLE 371
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.009 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 12/112 (10%) Query: 51 EAAAAGVEASLSKSDLPSPQEIRDILDQYVIGQERAKKILAVAVYNHYKRL-------KH 103 +A+ G L K E+ I+ + + +R L + + + Sbjct: 92 KASEKGAYDYLPKP--FDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEI 149 Query: 104 LDKKDDVELSKSNILLIGPTGSGKTLLAQTLARL---LNVPFVIADATTLTE 152 + + +++ G +G+GK L+A+ L N PFV + + Sbjct: 150 YRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR 201
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 67.1 bits (164), Expect = 1e-14 Identities = 72/323 (22%), Positives = 119/323 (36%), Gaps = 37/323 (11%) Query: 20 AATLAALSGPAHAQSTLTLYGVADAGVQYLSRADGRHAAWRLQN-----YGILPSQLGIK 74 A TLAAL P A + +TLYG AGV SR+ + A L S++G K Sbjct: 7 ALTLAAL--PVAAMADVTLYGTIKAGV-ETSRSVAHNGAQAASVETGTGIVDLGSKIGFK 63 Query: 75 GEEDLGGGWRARFQLEQGINLNDSTATVPGYAFFRGAYVGMGGPAGTVTLGRQFSTLFDK 134 G+EDLG G +A +Q+EQ ++ + + R +++G+ G G + +GR S L D Sbjct: 64 GQEDLGNGLKAIWQVEQKASIAGTDSGW----GNRQSFIGLKGGFGKLRVGRLNSVLKDT 119 Query: 135 TLFYDPLWYASYSGQGVLVPLSANFVDHSIKFQSATFAGFDVEALAAMAGIAGNTRAGRV 194 +P S + + S+++ S FAG ++ A N AGR Sbjct: 120 GDI-NPWDSKSDYLGVNKIAEPEARLI-SVRYDSPEFAGL-SGSVQ----YALNDNAGRH 172 Query: 195 ------LELGGQFTSRGLSASAVLHRSH-GTAQGGADRSAQRRDIGTFAARYAFASLPLT 247 + + R H ++ R + + +AS+ + Sbjct: 173 NSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDNDALYASVAVQ 232 Query: 248 VHAGVQRLTGELDPARTIV-------WGGARYQASGRFGFAGGIYHTDSPTPQVGHPTLF 300 ++T V +G + S GF G T+ Sbjct: 233 QQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDATNYNN----DYDQV 288 Query: 301 IASTTCSLSKRTVAYLNLGYAKN 323 + SKRT A ++ G+ + Sbjct: 289 VVGAEYDFSKRTSALVSAGWLQE 311
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.9 bits (70), Expect = 0.009 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 4/135 (2%) Query: 254 AQTSGNVLAIASLMGIAGAALASYLGGRAARRAMLLAGYGILAASLVALAAAPNANGYTL 313 G +LA+ +LM A A + L R RR +LL A +A AP + Sbjct: 42 TAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYI 101 Query: 314 A--IFGFKFAWTFVLPFMLASVAAVDATGRLIATLNLVIGSGLAAGPLAAGLMLDGGGTL 371 + G A V +A + D R ++ G G+ AGP+ GLM GG + Sbjct: 102 GRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM--GGFSP 159 Query: 372 RALFSIAAAVSLVSL 386 A F AAA++ ++ Sbjct: 160 HAPFFAAAALNGLNF 174
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99.5 bits (248), Expect = 3e-26 Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 2/136 (1%) Query: 7 SKILVVDDDPRLRDLLRRYLGEQGFNVYVAENATAMNKLWVRERFDLLVLDLMLPGEDGL 66 + ILV DDD +R +L + L G++V + NA + + DL+V D+++P E+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 67 SICRRLRGSNDRTPIIMLTAKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVL--RR 124 + R++ + P+++++A+ + I E GA DYLPKPF+ EL+ I L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 125 QAPAELPGAPSETTEV 140 + P++L + + Sbjct: 124 RRPSKLEDDSQDGMPL 139
>PF06580#Sensor histidine kinase Length = 349 Score = 38.3 bits (89), Expect = 5e-05 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 18/104 (17%) Query: 343 LVENARKYGQSKQDGIARILLETRVTHARVELVVADEGPGIPEDQLPLVMRPFYRVDTAR 402 LVEN K+G ++ +ILL+ + V L V + G ++ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT--------------- 307 Query: 403 SKADGTGLGMAIV-LRLVNRYRGALRLRNRTPDAGLEVTLEFPS 445 + TG G+ V RL Y +++ + + P Sbjct: 308 --KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.5 bits (66), Expect = 0.021 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 8/92 (8%) Query: 221 INQAQGEAAAILAVAEANSQAIQKIAQAIQSQGGMDAVNLKVAEQYVGAFGNLAKAGNTL 280 INQ A++ + SQ + + + + ++ V K+ NL G L Sbjct: 188 INQLVDTVASLNNNVNSFSQQLNTLGSVLSNTKHLNGVGNKLQN-----LPNLDNIGAGL 242 Query: 281 IVPSNLSDLSTAIASALTIVNRSAPGALAPGA 312 +S + +AI+++ + N A A Sbjct: 243 DT---VSGILSAISASFILSNADADTRTKAAA 271
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 265 bits (678), Expect = 4e-81 Identities = 99/441 (22%), Positives = 171/441 (38%), Gaps = 73/441 (16%) Query: 383 IHDPSEMERVQPGDVLVADMTDPNWEPVMK-RASAIVTNRGGRTCHAAIIARELGVPAVV 441 + S + ++ D+T + + K T+ GGRT H+AI++R L +PAVV Sbjct: 145 VETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVV 204 Query: 442 GCGDATDVLKDGALVTVSCAEGDEGKIYDGLLETEVSEVQRGE------------LPSVP 489 G + T+ ++ G +V V G EG + E EV + L P Sbjct: 205 GTKEVTEKIQHGDMVIVD---GIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEP 261 Query: 490 --------VKIMMNVGNPQLAFDFSQLPNAGVGLARLEFIINNNIGVHPKAILEYPNVDA 541 V++ N+G P+ G+GL R EF+ + P Sbjct: 262 STTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDR-DQLPT---------- 310 Query: 542 DLKKAVESVARGHASPRAFYVDKLTEGIATIAAAFYPKPVIVRLSDFKSNEYKKLIGGSR 601 ++ E + KPV++R D ++ + Sbjct: 311 --------------------EEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYL---- 346 Query: 602 YEPDEENPMLGFRGASRYIAEDFAQAFEMECMALKRVRDEMGLTNVEIMVPFVRTVKQAE 661 P E NP LGFR + + F + AL R N+++M P + T+++ Sbjct: 347 QLPKELNPFLGFRAIRLCL--EKQDIFRTQLRALLRAS---TYGNLKVMFPMIATLEELR 401 Query: 662 RVVGLLGKFGLKRGDNG------LRLIMMCEVPSNAILAEEFLQHFDGFSIGSNDLTQLT 715 + ++ + K G + + +M E+PS A+ A F + D FSIG+NDL Q T Sbjct: 402 QAKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYT 461 Query: 716 LGLDRDSGMELLAVDFDERDPAVKFMLKRAIDTCRKLDKYVGICGQGPSDHPDFAKWLAD 775 + DR + E ++ + PA+ ++ I K+VG+CG+ D L Sbjct: 462 MAADRMN--ERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLG 518 Query: 776 EGIASISLNPDTVIETWQALA 796 G+ S++ +++ L Sbjct: 519 LGLDEFSMSATSILPARSQLL 539
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 25.3 bits (55), Expect = 0.019 Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 1 MPRVRPAAIAIAIAIAIATATATATATDTD 30 M V A + +A++ A+A AT+ TD D Sbjct: 3 MKLVTAAIMGLAMSTAMAATDATSLTTDKD 32
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 41.4 bits (97), Expect = 7e-06 Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 22/122 (18%) Query: 342 VLYAAPSMLLSDITSAYNRAVVDNVAKVINVSLGVCEADARASGTQAADDRIFKSAVAQG 401 VL S I A+ + +I++SLG A + AVA Sbjct: 117 VLNKQGSGQYDWIIQGIYYAI-EQKVDIISMSLG---GPEDVPELHEAVKK----AVASQ 168 Query: 402 QTFVVAAGDAGAYECSVSRVSGGQGVPARSNYSVSEPATSPYVVAVGGTTLSTDRTTLAY 461 + AAG+ G + + P V++VG + + Sbjct: 169 ILVMCAAGNEGDGDDRTD--------------ELGYPGCYNEVISVGAINFDRHASEFSN 214 Query: 462 AG 463 + Sbjct: 215 SN 216
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 36.0 bits (83), Expect = 2e-04 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 15/119 (12%) Query: 116 IDDERVRRDLDAGKVVIITGFQGV---DPDGHITTL-GRGGSDTSAVAVAAALEADECLI 171 ++ E +++ ++ G +VI +G GV DG I + D + +A + AD +I Sbjct: 174 VEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMI 233 Query: 172 YTDVDGVYTTDPRVVEEARRLDSVTFEEMLEMA--------SLGSKVLQ-IRSVEFAGK 221 TDV+G E+ + L V EE+ + S+G KVL IR +E+ G+ Sbjct: 234 LTDVNGAALYYGT--EKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGE 290
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 28.4 bits (63), Expect = 0.017 Identities = 12/65 (18%), Positives = 20/65 (30%) Query: 72 DDAIKQFVELTQAYPELPEPYNNLAALYAKHGRYDDARSALVTATHANPNYGLAYENLGD 131 +DA K F L + L A G+YD A + + + + Sbjct: 53 EDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAE 112 Query: 132 LYLRL 136 L+ Sbjct: 113 CLLQK 117
>PRPHPHLPASEC#Prokaryotic zinc-dependent phospholipase C signature. Length = 398 Score = 28.8 bits (64), Expect = 0.034 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%) Query: 281 DVSAEKTVTLKGFKRDADGDFLVES-VTHEYAGRSWETEVVLNAGNKGKA 329 D +A +GF + + + ++H + + +V L KG A Sbjct: 212 DFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTA 261
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.2 bits (65), Expect = 0.007 Identities = 10/45 (22%), Positives = 18/45 (40%) Query: 82 VVVAFTVDRNGQLVKSAVYRSNGDDEAEGIALASLRRAAPLPPPP 126 V V F V +G++ + + + E ++RR P P Sbjct: 180 VKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKP 224
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.4 bits (79), Expect = 7e-04 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 15/147 (10%) Query: 290 LLCFAVLFMALATPLAAAAADRFGRKPVLIAGAIAALLSGFTMAPLLGSGSMPLVALFLT 349 LL L P+ A +DRFGR+PVL+ A + MA + V Sbjct: 48 LLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMA----TAPFLWVLYIGR 103 Query: 350 IELFLMGMTFAPMGALLPELFP--TNVRYTG-AGVAYNLGGILGASIAPYIAQLLAARGG 406 I + G T A GA + ++ R+ G + G + G + + Sbjct: 104 IVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPH--- 160 Query: 407 LAWVGAYVSAAAAIS--LVGVLLMRET 431 + +AA L G L+ E+ Sbjct: 161 ---APFFAAAALNGLNFLTGCFLLPES 184
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 174 bits (444), Expect = 4e-54 Identities = 90/350 (25%), Positives = 136/350 (38%), Gaps = 45/350 (12%) Query: 2 ILVTGGAGFIGANFVLDWLAQSDEAVLNVDKLT--YAGNLGTLK-SLQGNPKHVFARVDI 58 LVTG AGFIG + L + V+ +D L Y +L + L P F ++D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQ-VVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 59 CDRAAIDALLAQHKPRAIVHFAAESHVDRSIHGPADFVQTNVVGTFTLLEAARQYWSALG 118 DR + L A + V S+ P + +N+ G +LE R Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN----K 117 Query: 119 PDAKAAFRFLHVSTDEVFGSLSPADPQFSETTPYA-PNSPYSATKAGSDHLVRAYHHTYG 177 L+ S+ V+G L+ P FS P S Y+ATK ++ + Y H YG Sbjct: 118 IQ-----HLLYASSSSVYG-LNRKMP-FSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 178 LPVLTTNCSNNYGPYQFPEKLIPLMIANALGGKPLPVYGDGQNVRDWLYVGDHCSAIREV 237 LP YGP+ P+ + L GK + VY G+ RD+ Y+ D AI + Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230 Query: 238 L------------------ARGVPGETYNVGGWNEKKNLDVVHTLCDLLD-EARPKAAGS 278 A P YN+G + + +D + L D L EA+ Sbjct: 231 QDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKN---- 286 Query: 279 YRDQITYVTDRPGHDRRYAIDARKLERELGWKPAETFETGLAKTVRWYLD 328 + +PG + D + L +G+ P T + G+ V WY D Sbjct: 287 ------MLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 27.9 bits (62), Expect = 0.018 Identities = 6/48 (12%), Positives = 17/48 (35%), Gaps = 2/48 (4%) Query: 102 RDARRRGVAQRLLAALDDAARAAGKTVLVLDTVTGGDAERLYARAGWQ 149 ++ L ++ + ++ G + T+ + R+GW Sbjct: 112 ILGNEYPISSMLFLSMINYSKDKGYDGIY--TIVSHPMLTILKRSGWG 157
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 132 bits (334), Expect = 4e-36 Identities = 76/413 (18%), Positives = 165/413 (39%), Gaps = 24/413 (5%) Query: 14 LVVLCLGVLMIVLDSTIVNVALPSIGADLHFTETALVWIVNAYMLTFGGCLLLGGRLGDL 73 L+ LC+ VL+ ++NV+LP I D + + W+ A+MLTF + G+L D Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 74 YGQRRMFLAGLTLFTLASLACGLAPTQF-VLIAARAVQGFGGAVVSAVALSLIMNLFTEP 132 G +R+ L G+ + S+ + + F +LI AR +QG G A A+ + +++ + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPAL-VMVVVARYIPK 134 Query: 133 GERAKAMGVYSFVCAGGGSLGVLLGGVLTSVLSWHWIFLVNLPIGVAAYALSAALLPKVR 192 R KA G+ + A G +G +GG++ + HW +L+ +P+ ++ L K+ Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPM---ITIITVPFLMKLL 189 Query: 193 PQAA--DARLDVAGAIAVTASLMLAVYGIVNGNETGWLSTQTVATLAGAAALLAAFIAIE 250 + D+ G I ++ ++ + +L ++ F+ Sbjct: 190 KKEVRIKGHFDIKGIILMSVGIVFFMLF-TTSYSISFLIVSVLS--------FLIFVKHI 240 Query: 251 TRAAHPLMPLALATQRNVAVANVIGVLWAAAMFAWFFLSALYMQRVLGYGPLQVGLAFLP 310 + P + L + + G + + + + M+ V ++G + Sbjct: 241 RKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIF 300 Query: 311 ANLIMAAFSLGLSARIVMRFGIRRAIGAGLVIAAAGLALFARAPADGGFVAHVLPGMILV 370 + + +V R G + G+ + + +I+V Sbjct: 301 PGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLL----ETTSWFMTIIIV 356 Query: 371 GVGAGVAFNPVLLA--AMSDVAPSDSGLASGIVNTSFMMGGALGLAVLASVAS 421 V G++F +++ S + ++G ++N + + G+A++ + S Sbjct: 357 FVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409 Score = 31.0 bits (70), Expect = 0.012 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 66 LGGRLGDLYGQRRMFLAGLTLFTLASLACGLAP-TQFVLIAARAVQGFGGAVVSAVALSL 124 +GG L D G + G+T +++ L T + V GG + +S Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIST 371 Query: 125 IMNLFTEPGERAKAMGVYSFVCAGGGSLGVLLGGVLTSV 163 I++ + E M + +F G+ + G L S+ Sbjct: 372 IVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 38.0 bits (88), Expect = 2e-05 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 7/139 (5%) Query: 88 MAVTPNLALMYHRNVKVIDIFIARILLEVVGNTASFFVLMITFHALGLVDYPEDILEVMF 147 M M + +++ DI + + + + + ALG + +++ Sbjct: 94 MEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLS----LLY 149 Query: 148 AWVMIIWFG---ASLGFIIGALSEKTELVEKLWHPVTYLMFPLSGAIFMVDWLSPAFQKI 204 A +I G ASLG ++ AL+ + V + LSGA+F VD L FQ Sbjct: 150 ALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTA 209 Query: 205 VLWLPMVHGVEMLREGYFG 223 +LP+ H ++++R G Sbjct: 210 ARFLPLSHSIDLIRPIMLG 228
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 30.3 bits (67), Expect = 0.031 Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 314 LIDALETTPRGLYTGAIGW--LDAEARADGAEPAAGAFAPERAASPAAGTASDGACAGET 371 LI AL ++P G L A + A+PA G P R P AG + A + Sbjct: 13 LISALFSSPYAFADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHS 72 Query: 372 ASKQASKQASKRAGATSPAGACGDFCLSVAIRTLTLDAPSAGGERRGTMGVGAGIVLDSV 431 + A+ +A+K A AG+ SVAI L+ A G+ T G + D V Sbjct: 73 IAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLS----KALGDSAVTYGAASTAQKDGV 128 Query: 432 A 432 A Sbjct: 129 A 129
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 135 bits (342), Expect = 3e-37 Identities = 81/382 (21%), Positives = 138/382 (36%), Gaps = 71/382 (18%) Query: 5 IGIDLGTTNSCVAIMEGNQVKVIENSEGARTTPSIIAYMDDNEVL-VGAPAKRQSVTNPK 63 + IDLGT N+ + + V + R V VG AK+ P Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD----RAGSPKSVAAVGHDAKQMLGRTPG 68 Query: 64 NTLFAVKRLIGRRFEEKEVQKDIGLMPYAIIKADNGDAWVEAHGEKLAPPQVSAEVLRK- 122 N + A++ + + V D V+ ++L+ Sbjct: 69 N-IAAIRPM------KDGVIADF---------------------------FVTEKMLQHF 94 Query: 123 MKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFGLD 182 +K+ + P ++ VP +R+A +++ + AG +I EP AAA+ GL Sbjct: 95 IKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLP 154 Query: 183 KAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRIIDYII 242 +E V D+GGGT +V++I + V + +GG+ FD+ II+Y+ Sbjct: 155 VSE--ATGSMVVDIGGGTTEVAVISLNGV---------VYSSSVRIGGDRFDEAIINYVR 203 Query: 243 GEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSS----QQTEINLPYITADASGPKHLN 298 + G + AE+ K E+ S+ + EI + P+ Sbjct: 204 RNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFT 250 Query: 299 LKVTRAKLEALVEDLVERTIEPCRTAIKDAGVKVSDIDD--VILVGGQTRMPKVQEKVKE 356 L + LEAL E L + SDI + ++L GG + + + E Sbjct: 251 LN-SNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLME 309 Query: 357 FFGKEPRRDVNPDEAVAVGAAI 378 G +P VA G Sbjct: 310 ETGIPVVVAEDPLTCVARGGGK 331
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 157 bits (399), Expect = 3e-52 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 1/150 (0%) Query: 14 ISDKDRKK-IAAGLSRLLADTYTLYLKTHNFHWNVTGPMFNTLHLMFEEQYNELWLAVDL 72 + K + + L+ L++ + LY K H FHW V GP F TLH FEE Y+ VD Sbjct: 4 ENAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDT 63 Query: 73 VAERIRTLGVVAPGTYREFAKLSSIPEADGVPAAEEMVRQLVEGHEAVVRTARAIFPDAD 132 +AER+ +G T +E+ + +SI + +A EMV+ LV ++ + ++ + A+ Sbjct: 64 IAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAE 123 Query: 133 AASDEPTADLLTQRLQTHEKTAWMLRSLLA 162 D TADL ++ EK WML S L Sbjct: 124 ENQDNATADLFVGLIEEVEKQVWMLSSYLG 153
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.2 bits (83), Expect = 8e-04 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 6/87 (6%) Query: 140 RSAPRATPRGRTADGRAVPA-AAQAARAPRAPRAAPPDALPADTPPASAAKPAKRAAKAA 198 + TP AD +VP+ + AR AP P A P++T A +K Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA-----ENSKQE 1047 Query: 199 SKTVSKAAADAAGAQAAPKAVKTADKL 225 SKTV K DA A + V K Sbjct: 1048 SKTVEKNEQDATETTAQNREVAKEAKS 1074
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 25.2 bits (55), Expect = 0.039 Identities = 9/38 (23%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 14 IEIDDVIVGLLAI-RLNLPENADPRDAISRHLSEAGGP 50 + +DD IV + + R+ + + P++A + +S+ G Sbjct: 404 LLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGA 441
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.4 bits (73), Expect = 0.002 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Query: 29 VVVVCGPSGSGKSTLIKTVNGLEPFQQGEILVNGQSVGDKKTNLSKLRSKVGM 81 VV+ G G GKSTLI T+ GL+ F +G K + ++ V Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHF-----DIGTGKDSYEQIAGIVAY 645
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 35.2 bits (81), Expect = 5e-04 Identities = 60/314 (19%), Positives = 116/314 (36%), Gaps = 9/314 (2%) Query: 37 APFISKDIAMTAAQQGFLVAVPVLAAAILRVTLGNLYQSADGRRIALMGVLLSALPAAVL 96 P I+ D A ++ +L +I G L +R+ L G++++ +V+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCF-GSVI 95 Query: 97 PFVPGTPSYTLLLVLGVFLGIGGASFAVALPMAGSSY-PPKVQGLVLGL-AAAGNIGAVL 154 FV G ++LL++ G G A+F + + + Y P + +G GL + +G + Sbjct: 96 GFV-GHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 155 DGFMFPHIAAALGWKFSTTAALPLLAIAGFALFAWADDRAEKSGSAARAFGAFVITLGGL 214 + IA + W + +P++ I F + E ++ G+ Sbjct: 155 GPAIGGMIAHYIHWSY--LLLIPMITIIT-VPFLMKLLKKEVRIKGHFDIKGIILMSVGI 211 Query: 215 VALVLAVHAGLFGAGKAGVLLLPVMGALLAIAVLPGRYRAVLAERDTWVIMLIYSITFGG 274 V +L + VL + + P + + +L I FG Sbjct: 212 VFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGT 271 Query: 275 FVGMSSYVTLLLTTLYQMPKIEAGLFMSLLAFLGAIVR-PFGGHLADRITGVRALMAILA 333 G S V ++ ++Q+ E G + + I+ GG L DR G ++ I Sbjct: 272 VAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRR-GPLYVLNIGV 330 Query: 334 AIAAADFAFAAVMP 347 + F A+ + Sbjct: 331 TFLSVSFLTASFLL 344
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 123 bits (310), Expect = 3e-36 Identities = 76/249 (30%), Positives = 113/249 (45%), Gaps = 8/249 (3%) Query: 26 GRAVLITGGATGIGASFVEHFARQGARVAFVDLDEKAGRALVARLADAAHEPVFVVCDLT 85 G+ ITG A GIG + A QGA +A VD + + +V+ L A D+ Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 86 DIGALRGAIDAIRVRIGPIAVLVNNAANDVRHAVADVTPESFDASIAVNLRHQFFAAQAV 145 D A+ I +GPI +LVN A + ++ E ++A+ +VN F A+++V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 146 IDDMKRLGGGAIVNLGSIGWMLKNAGYPVYATAKAAVQGLTRALARELGPFGIRVNTLVP 205 M G+IV +GS + YA++KAA T+ L EL + IR N + P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 206 GWVMTDKQRRLWLDDAGRAAIKAGQCIDAEL--------LPGDLARMALFLAADDSRLIT 257 G TD Q LW D+ G + G + P D+A LFL + + IT Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 258 AQDVVVDGG 266 ++ VDGG Sbjct: 248 MHNLCVDGG 256
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.040 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 5/38 (13%) Query: 18 RALD-GISFDVHAGQVHGLMGENGAGKSTLLKILGGEY 54 R ++ G FD L G G GKSTL+ L G Sbjct: 587 RVMEPGCKFDY----SVVLEGTGGIGKSTLINTLVGLD 620
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 135 bits (342), Expect = 7e-41 Identities = 81/260 (31%), Positives = 130/260 (50%), Gaps = 14/260 (5%) Query: 14 LAGKVAIVTGAGRGIGAAIARAFVREGAAVAIAELDAA---LAEESADAIARDTAGARVL 70 + GK+A +TGA +GIG A+AR +GA +A + + S A AR Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE----- 60 Query: 71 AVPTDVARAESVAAALARTERAFGPLDVLVNNAGVNVFGDPLALTDEDWRRCFAIDLDGV 130 A P DV + ++ AR ER GP+D+LVN AGV G +L+DE+W F+++ GV Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 131 WNGCRAALPGMVERGRGSIVNIASTHAFKIIPGCFPYPVAKHGVLGLTRALGIEYAPRNV 190 +N R+ M++R GSIV + S A Y +K + T+ LG+E A N+ Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 191 RVNAIAPGYIETQLTHDWWSAQPDPQAARRETLALQ-----PMKRIGRPDEVAMTAVFLA 245 R N ++PG ET + W+ + + + P+K++ +P ++A +FL Sbjct: 181 RCNIVSPGSTETDMQWSLWADE-NGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 246 SDEAPFINASCITIDGGRSV 265 S +A I + +DGG ++ Sbjct: 240 SGQAGHITMHNLCVDGGATL 259
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 27.9 bits (61), Expect = 0.025 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 8/54 (14%) Query: 84 HRWVPYDQIARTLKRAVIA--------SEDADFANNSGYEVDAILQAWEKNRAR 129 +RW+ Y Q +TL++A+ ++ D A NS E LQAW+ + R Sbjct: 64 NRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQER 117
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 2e-04 Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 6/165 (3%) Query: 19 VAKKAAPAKKAAVKKVAAKKVAVKKVAAKKAAPAKKVAAKKVAAKKAPAKKAAAKKVAVK 78 V K+ + + V V + +A A PA ++ Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEE----IARVDEAPVPPPAPATPSETTETV 1040 Query: 79 KVAAKKVAAKKAPAKKAAAKKVAVKKVAAKKVAAKKAAPAKKAAAKKAAPAKKAAAKKAA 138 +K+ + ++ A + A + AK AK A + A + + Sbjct: 1041 AENSKQESKTVEKNEQDATETTAQNREVAK--EAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 139 PAKKAAAKKAAPKKAVVKKAAPATTASTASVAPASGVKTALNPAA 183 K+ A + K V + T+ V+P + P A Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143
>FLAGELLIN#Flagellin signature. Length = 507 Score = 26.2 bits (57), Expect = 0.021 Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%) Query: 68 LRISRAGDDA-GTAIGNR 84 LRI+ A DDA G AI NR Sbjct: 35 LRINSAKDDAAGQAIANR 52
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 257 bits (657), Expect = 3e-84 Identities = 115/404 (28%), Positives = 194/404 (48%), Gaps = 13/404 (3%) Query: 14 YRWAGVTIDGARRRGMLIAVDPSAARAALKRTGVTVLRL-EARGRAPQPAAR-------- 64 Y + + G + RG A AR L+ G+ L + E RG + + Sbjct: 4 YHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKI 63 Query: 65 ---ASEVTRFARQLAGLLHAGLALAPSLELLAQATQRSEMPRVAAGLAREIVAGRQFSAA 121 S++ RQLA L+ A + L +L+ +A+ +++ + ++ A + +++ G + A Sbjct: 64 RLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADA 123 Query: 122 LRRYPRQFDPFFCQLVAVGETAGALAAVLTRLADDRERAAAQYARVKGALAYPATVLLFA 181 ++ +P F+ +C +VA GET+G L AVL RLAD E+ +R++ A+ YP + + A Sbjct: 124 MKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVA 183 Query: 182 LAITAALLVWVVPTFEQIFAGFGAPLPAPTRFVLALSAGVTRWSAPAAAAALFACVAIRH 241 +A+ + LL VVP + F LP TR ++ +S V + A L +A R Sbjct: 184 IAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRV 243 Query: 242 AARRSAAARVALARTLLRAPFVGPLVQTLAAARWSRALGTLLAAGTPLTDAFAALSNATG 301 R+ RV+ R LL P +G + + L AR++R L L A+ PL A + Sbjct: 244 MLRQE-KRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMS 302 Query: 302 NPRFDLATAGIAARVLHGERLARAMRAEGCFPDDLVQPIAVAEESGTLDTMLIDAATLCD 361 N + V G L +A+ FP + IA E SG LD+ML AA D Sbjct: 303 NDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQD 362 Query: 362 RRVDERISALANLCEPVVIVVLGALIGALVVAMYLPIVQLGNVV 405 R +++ L EP+++V + A++ +V+A+ PI+QL ++ Sbjct: 363 REFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 280 bits (718), Expect = 2e-96 Identities = 136/276 (49%), Positives = 172/276 (62%), Gaps = 1/276 (0%) Query: 20 LAAFAALPTGMQLAFAIVLGLVVGSFLNVVVHRLPIMMKRAWLAEIAEATGAPCADDSLP 79 L A + + + L++GSFLNVV+HRLPIM++R W AE P Sbjct: 4 LLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEP 63 Query: 80 ARYNLCVPRSACPHCGHALRAWENVPVLSYIALRGRCRHCRTPIGARYPLIELASGALAA 139 YNL VPRS CPHC H + A EN+P+LS++ LRGRCR C+ PI ARYPL+EL + L+ Sbjct: 64 -PYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSV 122 Query: 140 GALALFGPSGAALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLR 199 P LAA L L+A++ ID+ LPD LTLPLLW GL NL G F SL Sbjct: 123 AVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLG 182 Query: 200 AAVIGAIAGYLFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQVVLIAAVAG 259 AVIGA+AGYL LW + W FKLL G EG+GYGD KLLAALGAWLGW+ALP V+L++++ G Sbjct: 183 DAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVG 242 Query: 260 AAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFG 295 A +G+ +P+PFGP+LA G L +G Sbjct: 243 AFMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWG 278
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 37.4 bits (87), Expect = 7e-05 Identities = 52/224 (23%), Positives = 83/224 (37%), Gaps = 45/224 (20%) Query: 5 AIDFGTSNSAVALPRGGGTTGMRLAPVEGEHLTLPTAIFFNTDESTREYGRAALASYIDG 64 +ID GT+N+ + + +G G L P+ + D + AA+ G Sbjct: 14 SIDLGTANTLIYV-KGQGIV-----------LNEPSVVAIRQDRAGSPKSVAAV-----G 56 Query: 65 FDGRLM--RSMKSILGSPLAETTTDLGDGSAIAYTDVIALFLMH-LKQKAEACAGGAIGC 121 D + M R+ +I + DG IA V L H +KQ Sbjct: 57 HDAKQMLGRTPGNI------AAIRPMKDG-VIADFFVTEKMLQHFIKQVHSNSFMRPSPR 109 Query: 122 AVLGRPVFFVDDDPRADRLAQQQLEAAAHAVGLADVQFQYEPIAAAFDYESRQDAERLVL 181 ++ PV + RA R E+A A G +V EP+AAA + Sbjct: 110 VLVCVPVGATQVERRAIR------ESAQGA-GAREVFLIEEPMAAAIGAGLPVSEATGSM 162 Query: 182 VADIGGGTSDFSLVRVGPERMRRLERKDDVLAHHGVHVAGTDYD 225 V DIGGGT++ +++ + V+ V + G +D Sbjct: 163 VVDIGGGTTEVAVISLN-----------GVVYSSSVRIGGDRFD 195
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 132 bits (334), Expect = 2e-36 Identities = 81/429 (18%), Positives = 159/429 (37%), Gaps = 53/429 (12%) Query: 28 RPVSFAVLASAAASMALGVI--LLFTFGTYTRRTTVDGVLTPDTGLVKVYAQQTGVVLKK 85 PVS A M VI +L G T +G LT ++ + +V + Sbjct: 51 TPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEI 110 Query: 86 NVVEGQHVTRGQVLYTVSTDLQSAAAGQTQAAL----IEQAQQRKTSLQQELDKTRRLQ- 140 V EG+ V +G VL ++ A +TQ++L +EQ + + S EL+K L+ Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL 170 Query: 141 ----------------------------QDERDTLQSKIASLRTELAGIDDQIAAQRTRA 172 Q+++ + + R E + +I + Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Query: 173 SIAADAASRYAGLLAQDYISKDQAQQRQADLLDQRSKLNSLMRDRASTAQSLKEALNDLS 232 + ++ LL + I+K +++ ++ ++L + A + Sbjct: 231 RVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ 290 Query: 233 GLSLKQQNQLSQIDRSVIDVDRTLIESEAKREF-----VVTAPETGT-ATAVIAEPGQTA 286 ++ +N++ R D L AK E V+ AP + + G Sbjct: 291 LVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVV 350 Query: 287 DTSHPLASIVPTGAHWQAYLFVPSAAVGFVHVGDRVLVRYQAYPYQKFGQYEASVVSIAR 346 T+ L IVP + V + +GF++VG +++ +A+PY ++G V +I Sbjct: 351 TTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL 410 Query: 347 TALSAAELATSGGPAAQTASGTYYRITVALNSQNVMAYGRAQPLQAGMALQADVLQERRR 406 A+ G + + +++ + + PL +GMA+ A++ R Sbjct: 411 DAIE------------DQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRS 458 Query: 407 LYEWVLEPL 415 + ++L PL Sbjct: 459 VISYLLSPL 467
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 91.5 bits (227), Expect = 3e-23 Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 2/103 (1%) Query: 203 FETGSATLTPQGRAILDQMAGALAKM--SNRTVEIIGHTDNSGNRTSNIALSQARADAVK 260 F ATL P+G+A LDQ+ L+ + + +V ++G+TD G+ N LS+ RA +V Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVV 282 Query: 261 GYLVTKGIASQQLTTTGVGPDQPIAPNDSADGRARNRRIEFRA 303 YL++KGI + +++ G+G P+ N + + R I+ A Sbjct: 283 DYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLA 325
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 73.7 bits (181), Expect = 3e-16 Identities = 66/303 (21%), Positives = 90/303 (29%), Gaps = 94/303 (31%) Query: 250 VCVLDTGIAAAHPLLAPAIGETGNFIEPGE----PAADEDGHGTRVAGLA--------LY 297 V VLDTG A HP L I NF + E D +GHGT VAG + Sbjct: 45 VAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYNGHGTHVAGTIAATENENGVV 104 Query: 298 GSMTDLLPDRFAPQLRLFAGKVFSNDGQDQTHFVEKAVEDAVRYFREEYGCKIFCLAYGD 357 G AP+ L KV + G Q ++ + + A+ E I ++ G Sbjct: 105 G---------VAPEADLLIIKVLNKQGSGQYDWIIQGIYYAI-----EQKVDIISMSLG- 149 Query: 358 ANKVYDGRHVRGLAYTLDRLSRELNILFVVPTGNLLSDEIPDDALQTYPQYLSGSEFRLL 417 V L + + IL + GN E D Y Sbjct: 150 -----GPEDVPELHEAVKKAVAS-QILVMCAAGN----EGDGDDRTDELGY--------- 190 Query: 418 DPATSINSLTVGGLAEFELDHQAQRFPERIETTPIARRNQPSPFTRSGPSVAGAVKPDFV 477 P ++VG I S F+ S V D V Sbjct: 191 -PGCYNEVISVGA---------------------INFDRHASEFSNSNNEV------DLV 222 Query: 478 AFGGNVARHHLRNGFAGQRLGVVSTSRNFADGRLFDDAPGTSFAAPQVAHLAATVLRFLP 537 A G ++ ST G + GTS A P VA A + + Sbjct: 223 APGEDIL----------------STV----PGGKYATFSGTSMATPHVAGALALIKQLAN 262 Query: 538 DAS 540 + Sbjct: 263 ASF 265
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 68.1 bits (166), Expect = 9e-15 Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 38/183 (20%) Query: 116 NLGSGVIVSSEGYILTNQHVVDGADQIEVALA------------DGRTATAKVIGSDPET 163 + SGV+V +LTN+HVVD AL +G ++ E Sbjct: 102 FIASGVVVGK-DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEG 160 Query: 164 DLAVLKIN--------MTNLPTITLGRSDQSRVGDVVLAIGNPFGVGQTVTMGIISALGR 215 DLA++K + + T+ + +++V + G P ++ + Sbjct: 161 DLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD-------KPVATMWE 213 Query: 216 NHLGINTFEN-FIQTDAPINPGNSGGALVDVNGNLLGINTAIYSRSGGSLGIGFAIPVST 274 + I + +Q D GNSG + + ++GI+ G+ + Sbjct: 214 SKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFNGAV 264 Query: 275 ARN 277 N Sbjct: 265 FIN 267
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 77.4 bits (190), Expect = 2e-20 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 1 MLDLGLSKMALIGVVALVVLGPERLPRVARTAGALFGRAQRYINDVKAEVSREIELDALR 60 M D+G S++ L+ ++ LVVLGP+RLP +T + V+ E+++E++L + Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ 60 Query: 61 TMKTDFEQAA-RNVENTIHDNLRE 83 E+A+ N+ + ++ E Sbjct: 61 DSLKKVEKASLTNLTPELKASMDE 84
>FLAGELLIN#Flagellin signature. Length = 507 Score = 132 bits (332), Expect = 3e-36 Identities = 104/336 (30%), Positives = 149/336 (44%), Gaps = 9/336 (2%) Query: 4 INSNINSLVAQQNLNGSQGALSQAITRLSSGKRINSAADDAAGLAIATRMQTQINGLNQG 63 IN+N SL+ Q NLN SQ +LS AI RLSSG RINSA DDAAG AIA R + I GL Q Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 VSNANDGVSILQTASSGLTSLTNSLQRIRQLAVQASNGPLSASDASALQQEVAQQISEVN 123 NANDG+SI QT L + N+LQR+R+L+VQA+NG S SD ++Q E+ Q++ E++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 124 RIASQTNYNGKNILDGSAGTLSFQVGANVGQTVSVDLTQSMSAAKIGGGMVQTGQTLGTI 183 R+++QT +NG +L + QVGAN G+T+++DL + + G G T+ Sbjct: 124 RVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATV 182 Query: 184 KVAIDSSGAAWSSGSTGQETTQINVVSDGKGGFTFTDQNNQALSSTAVTAVFGSSTAGTG 243 S + + V + T T A +T Sbjct: 183 GDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAE 242 Query: 244 TAASPSFQTLALSTSATSALSATDQANATAMVAQINAVNKPQTVSNLDISTQTGAYQAMV 303 + ST+ T A A A+ I + T ++ Sbjct: 243 NNTAVDLFKTTKSTAGT--------AEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGND 294 Query: 304 SIDNALATVNNLQATLGAAQNRFTAIATTQQAGSNN 339 T+N + TL A A ++ Sbjct: 295 GNGKVSTTINGEKVTLTVADITAGAANVDAATLQSS 330 Score = 84.3 bits (208), Expect = 7e-20 Identities = 61/263 (23%), Positives = 100/263 (38%), Gaps = 3/263 (1%) Query: 129 TNYNGKNILDGSAGTLSFQVGANVGQTVSVDLTQSMSAAKIGGGMVQTGQTLGTIKVAID 188 T + +AGT + A + T G + I+ Sbjct: 245 TAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTIN 304 Query: 189 SSGAAWSSGSTGQETTQIN---VVSDGKGGFTFTDQNNQALSSTAVTAVFGSSTAGTGTA 245 + ++ + S + + T + S Sbjct: 305 GEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAV 364 Query: 246 ASPSFQTLALSTSATSALSATDQANATAMVAQINAVNKPQTVSNLDISTQTGAYQAMVSI 305 S T+ + +A M A ++ + + + SI Sbjct: 365 KGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASI 424 Query: 306 DNALATVNNLQATLGAAQNRFTAIATTQQAGSNNLAQAQSQIQSADFAQETANLSRAQVL 365 D+AL+ V+ ++++LGA QNRF + T NL A+S+I+ AD+A E +N+S+AQ+L Sbjct: 425 DSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQIL 484 Query: 366 QQAGISVLAQANSLPQQVLKLLQ 388 QQAG SVLAQAN +PQ VL LL+ Sbjct: 485 QQAGTSVLAQANQVPQNVLSLLR 507
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 36.8 bits (85), Expect = 1e-04 Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 15/125 (12%) Query: 262 AQVRRVLDGTPD--YAEAHRVLNMTLSARGRYQEAIEAGRRSVELAPNSVNAHGSLAVTL 319 A + + T + Y+ A G+Y++A + + L L Sbjct: 26 AMLNEISSDTLEQLYSLA-----FNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACR 80 Query: 320 SDYGQTDEAEIHFRRAHELNPKDPMAYSNLLFCQSHKIDV--------SIRELFDAHRAF 371 GQ D A + ++ K+P + C K ++ +EL F Sbjct: 81 QAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140 Query: 372 GELYE 376 EL Sbjct: 141 KELST 145 Score = 33.7 bits (77), Expect = 0.001 Identities = 20/80 (25%), Positives = 29/80 (36%) Query: 182 TLYNKRRMAEAIKFARALAQRYPGSGVAWKSLGFALHRDGQYGPACEALTKGAAMLPDDA 241 Y + +A K +AL + LG GQY A + + GA M + Sbjct: 45 NQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEP 104 Query: 242 ECNTLYADTLRVLNRLADAE 261 A+ L LA+AE Sbjct: 105 RFPFHAAECLLQKGELAEAE 124
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 96.7 bits (240), Expect = 3e-26 Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 9/251 (3%) Query: 9 LAGGTYLVTGASSGIGRAAAIAIAQLGGRLVLGGRDPARLADTLAALPGDGHASHAAALD 68 + G +TGA+ GIG A A +A G + +P +L +++L + + A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 69 DADAAA--DWVGALAETHGPLAGVFHAAGVELIRPARMTAQAQLEQVFGASLYAAFGIAR 126 D+AA + + GP+ + + AGV + + E F + F +R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 127 AAAKKNVIADGGSVVYMSSVAGSTGQVGMTAYSAAKAGIEGLVRSLACELAPRRIRANAI 186 + +K + GS+V + S + M AY+++KA + L ELA IR N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 187 AAGAVKTEMHARL--TRGTPEDALAAYEASHLLG-----FGEPGDVAAAAIFLLSGASRW 239 + G+ +T+M L E + + G +P D+A A +FL+SG + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 240 ITGTSLVVDGG 250 IT +L VDGG Sbjct: 246 ITMHNLCVDGG 256
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 27.9 bits (61), Expect = 0.045 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 2/107 (1%) Query: 76 LSLSAIAASEAFSFAYAWTCRRHRWPLALAAGLAAWAAAASALARLPATPPAATAVAFAA 135 +S+SA S FS YA+ P A ++ A A L P PP A A Sbjct: 7 ISVSAALISALFSSPYAFADDYDGIPNLTAVQISPNADPALGLE-YPVRPPVPGAGGLNA 65 Query: 136 TCFGQSCLPRGATLAPRAPLSHADLAGRLAAGAALALAVTSLAGALG 182 + G + GAT + A AG +A G ++A+ L+ ALG Sbjct: 66 SAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVN-SVAIGPLSKALG 111
>PF05272#Virulence-associated E family protein Length = 892 Score = 26.6 bits (58), Expect = 0.030 Identities = 13/42 (30%), Positives = 21/42 (50%) Query: 5 IRAAACCVLVSSLAACVVTPPRPAPAPRPSPQVVGYERMQQI 46 + + A V+ + A PPRP P PRP + +E +Q + Sbjct: 99 LESVAGIVMGAPAGAPAPKPPRPEPPPRPVVEKECWETIQPV 140
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 31.3 bits (71), Expect = 0.006 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 8/111 (7%) Query: 68 DAHLNDEPKALPRVHTEGTLPHEGIYDQSAEALNDMELMRNAALAWRVTNQSRYLALVDR 127 D L D K + E + + S ++ E M N + R + + R Sbjct: 83 DPELVDGIKGK--IENEQMNAEYALKEVSDMFVSMFESMDNEYMKERAAD---IRDVSKR 137 Query: 128 FLSTWVNTYRPSFNPIDETRFESLILAYDMTASALPVKTRNAAAAFIAALG 178 L + S I E E++I+A D+T S + F +G Sbjct: 138 VLGHLIGVETGSLATIAE---ETVIIAEDLTPSDTAQLNKQFVKGFATDIG 185
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 7e-20 Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 1/135 (0%) Query: 2 RLLLIEDDRPIARGIQSSLEQAGFTVDMVHDGIFAEQALAQNRHELVILDLGLPGIDGMT 61 +L+ +DD I + +L +AG+ V + + + +A +LV+ D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLSRFRQTNRHTPVIVLTARDELNDRVQGLNSGADDYMLKPFEPAE-LEARIRAVMRRSG 120 LL R ++ PV+V++A++ ++ GA DY+ KPF+ E + RA+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 PHSDMPRPEVSLGGV 135 S + + Sbjct: 125 RPSKLEDDSQDGMPL 139
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 291 bits (747), Expect = e-102 Identities = 155/242 (64%), Positives = 192/242 (79%), Gaps = 1/242 (0%) Query: 11 RWLPAILIGLAPALACAQAAGLPAFNSAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70 R L + L + A LP S P P GG ++SL VQT++ +T L+F+PA+LLMM Sbjct: 3 RLLSVAPVLLW-LITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMM 61 Query: 71 TSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVIDRAYNDAYKPFSEGTL 130 TSFTRIIIV LLR A+GT S PPNQVL+GLALFLT F+MSPVID+ Y DAY+PFSE + Sbjct: 62 TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKI 121 Query: 131 QMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAPMQGPEDVPLSLLVPAFVTSELKT 190 M +A+++G P + FML+QTRE DL LFA+++ P+QGPE VP+ +L+PA+VTSELKT Sbjct: 122 SMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKT 181 Query: 191 GFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQ 250 FQIGFTIFIPFLIID+V+ASVLM++GMMMV PAT++LPFKLMLFVLVDGWQLL+GSLAQ Sbjct: 182 AFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQ 241 Query: 251 SF 252 SF Sbjct: 242 SF 243
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 68.6 bits (168), Expect = 4e-19 Identities = 26/85 (30%), Positives = 46/85 (54%) Query: 4 ENVMTLAHQAMYIGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAATMV 63 ++++ ++A+Y+ L+L+ +VA +GL+V LFQ TQ+ E TL F KLL V + Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 IAGPWMLSTMIDYLRETLLRVATLG 88 + W ++ Y R+ + G Sbjct: 62 LLSGWYGEVLLSYGRQVIFLALAKG 86
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 161 bits (409), Expect = 7e-51 Identities = 116/253 (45%), Positives = 158/253 (62%), Gaps = 4/253 (1%) Query: 1 MFSVTYAQLNGWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPP 60 M VT Q WL + WP +R+LAL++ AP+ RS P RVK+GLA + +AP+LP Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 MPPMPVATVFSAQGVWIIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDP 120 VFS +W+ V Q LIG ALGFTMQ FAA+ AG+IIGL MGL FATF DP Sbjct: 61 NDVP----VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDP 116 Query: 121 HSSGATPVMGRFLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSADLLRAAGWQTLVAFG 180 S PV+ R ++ +A+L FL F+GHL + + LVD+F +P+ + L + + L G Sbjct: 117 ASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG 176 Query: 181 AAIFEMGLLLALPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNL 240 + IF GL+LALP++ LL NLALG+LNR APQ+ IF +GFP+T+ VG+ L+ + P + Sbjct: 177 SLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLI 236 Query: 241 IPFVGRLFDTGVD 253 PF LF + Sbjct: 237 APFCEHLFSEIFN 249
>PF06580#Sensor histidine kinase Length = 349 Score = 54.5 bits (131), Expect = 3e-10 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 22/128 (17%) Query: 334 RIDLGAELDDDLQVAGSESLLSALLMNLVDNAVRYAHE----GGRVTVSARRDGDAVVLE 389 R+ +++ + + L+ LV+N +++ GG++ + +D V LE Sbjct: 239 RLQFENQINPAIM---DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295 Query: 390 VVDDGPGIPAEARPHVFKRFYRVARDEEGTGLGLAIVEE-IAQSHGGAVSLATGPGNRGV 448 V + G +E TG GL V E + +G + V Sbjct: 296 VENTGSLALKN--------------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV 341 Query: 449 RMTVRLPA 456 V +P Sbjct: 342 NAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.1 bits (239), Expect = 3e-25 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 2 KLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKE 61 +L+ +D+A + + L G+ V + + + A D ++ D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARI-RALIRRQ 119 LL R+++ ++PVL+++A + + GA DY+ KPF+ EL+ I RAL + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 64.1 bits (156), Expect = 1e-13 Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 28/228 (12%) Query: 1 MKRQYLALSIATAACAAPQAHAQSSVQLYGLIDLSVPTYRSHANAKGDHVIGMGLGGEPW 60 MK+ +AL++A AA + V LYG I V T RS A+ G + G Sbjct: 1 MKKSLIALTLAALPVAA-----MADVTLYGTIKAGVETSRSVAH-NGAQAASVETGTGIV 54 Query: 61 FSGSRWGLKGAEDIGGGTKVIFRLESEYTVADGNMEDPGQIFDRDAWVGVENDTFGKLTA 120 GS+ G KG ED+G G K I+++E + ++A + +R +++G++ FGKL Sbjct: 55 DLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGTD----SGWGNRQSFIGLKGG-FGKLRV 109 Query: 121 GFQNTIARDAAAIYGDPYGSAKLTTEEGGWTNANNFKQMIFYAAGATGTRYNNGLAWKKL 180 G N++ +D I +P+ S RY++ + Sbjct: 110 GRLNSVLKDTGDI--NPWDSKSDYLGVNKIAEPEARL---------ISVRYDS----PEF 154 Query: 181 FGNGIFASAGYAFSNSTSFGQNSTYQVALGYNGGPFNVSGFFSHVNHA 228 G+ S YA +++ + +Y Y G F V ++ H Sbjct: 155 A--GLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHH 200
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 490 bits (1263), Expect = e-171 Identities = 204/576 (35%), Positives = 320/576 (55%), Gaps = 46/576 (7%) Query: 1 MDIKRTVLWVIFFMSAVMLFDNWQRSHGRPSMFFPNVTQTNTASNATNGNGASGASAAAA 60 MD +R +L + + M++ W++ Q T + T Sbjct: 1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQ-----PQAQQTTQTTTT------------- 42 Query: 61 ANALPAAATGAAPATTAPAAQAQLVRFSTDVYNGEIDTRGGTLAKLTLTK---AGDGKQP 117 AA AA + Q +L+ TDV + I+TRGG + + L + QP Sbjct: 43 ------AAGSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQP 96 Query: 118 DLSVTLFDHTANHTYLARTGLLGGDFPN-----HNDVYAQVAGPTSLAADQNTLKLSFES 172 L + + Y A++GL G D P+ +Y LA QN L++ Sbjct: 97 ---FQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTY 153 Query: 173 PVKGGVKVVKTYTFTRGSYVIGVDTKIENVGAAPVTPSVYMELVRD-----NSSVETPMF 227 G KT+ RG Y + V+ ++N G P+ S + +L + + + F Sbjct: 154 TDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNF 213 Query: 228 S-HTFLGPAVYTDQKHFQKITFGDIDKNKADYVTSADNGWIAMVQHYFASAWIPQSGAKR 286 + HTF G A T + ++K F I N+ ++S GW+AM+Q YFA+AWIP + Sbjct: 214 ALHTFRGAAYSTPDEKYEKYKFDTIADNENLNISS-KGGWVAMLQQYFATAWIPHNDGTN 272 Query: 287 DIYVEKIDPTLYRVGVKQPVAAIAPGQSADVSARLFAGPEEERMLEGIAPGLELVKDYGW 346 + Y + + +G K + PGQ+ +++ L+ GPE + + +AP L+L DYGW Sbjct: 273 NFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGW 332 Query: 347 VTIIAKPLFWLLEKIHGFVGNWGWAIVLLTLLIKAVFFPLSAASYKSMARMKEITPRMQA 406 + I++PLF LL+ IH FVGNWG++I+++T +++ + +PL+ A Y SMA+M+ + P++QA Sbjct: 333 LWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQA 392 Query: 407 LRERFKSDPQKMNAALMELYKTEKVNPFGGCLPVVIQIPVFISLYWVLLASVEMRGAPWV 466 +RER D Q+++ +M LYK EKVNP GGC P++IQ+P+F++LY++L+ SVE+R AP+ Sbjct: 393 MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFA 452 Query: 467 LWIHDLSQRDPYFILPVLMAVSMFVQTKLNPTP-PDPVQAKMMMFMPIAFSVMFFFFPAG 525 LWIHDLS +DPY+ILP+LM V+MF K++PT DP+Q K+M FMP+ F+V F +FP+G Sbjct: 453 LWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSG 512 Query: 526 LVLYYVVNNVLSIAQQYYITRTL---GGAAAKKKAS 558 LVLYY+V+N+++I QQ I R L G + +KK S Sbjct: 513 LVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS 548
>PF05272#Virulence-associated E family protein Length = 892 Score = 36.6 bits (84), Expect = 2e-04 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 9/123 (7%) Query: 191 IDFLEAADARGKLAHIR--ERLAHVLGDARQGALLREGLSV----VLAGQPNVGKSSLLN 244 + L K +R + + + ++ G VL G +GKS+L+N Sbjct: 555 VHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLIN 614 Query: 245 ALAGAELAIVTPI-AGTTRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIARTWGEI 303 L G + T GT +D Q I L + R + E K + Sbjct: 615 TLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMT--AFRRADAEAVKAFFSSRKDRY 672 Query: 304 ERA 306 A Sbjct: 673 RGA 675
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 40.7 bits (95), Expect = 8e-07 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 11/113 (9%) Query: 37 FEEPYETFTELSQLYDQHVHDQRERRFVAFDSDGELVGLVELI----ELDYIHRRGEFQI 92 F +PY E + +V ++ + F+ + + +G +++ I I Sbjct: 42 FSKPYFKQYEDDDMDVSYVEEEGKAAFLYY-LENNCIGRIKIRSNWNGYALIE-----DI 95 Query: 93 IIAPNRQGRGFATRATRLAVEYAFKVLNLRKLYLIVDKSNVAAIRVYEKCGFK 145 +A + + +G T A+E+A K + L L N++A Y K F Sbjct: 96 AVAKDYRKKGVGTALLHKAIEWA-KENHFCGLMLETQDINISACHFYAKHHFI 147
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 29.7 bits (66), Expect = 0.018 Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 44 FEKETGIKVRLDVYDSNEALQTKLTTGNSGYDLVFPSNDFLARQIQAGL 92 FEK+TGIKV ++ D E ++ G D++F ++D Q+GL Sbjct: 53 FEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGL 101
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 108 bits (272), Expect = 1e-29 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 1/144 (0%) Query: 2 ATILVVDDEMGIRELLSEILSDEGHVVDVAENAQAARDYRLRQAPDLVLLDIWMPDTDGV 61 ATILV DD+ IR +L++ LS G+ V + NA + DLV+ D+ MPD + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 TLLKEWASQGQLTMPVIMMSGHATIDTAVEATKIGALDFLEKPITLQKLLKSVEHGLARG 121 LL +PV++MS T TA++A++ GA D+L KP L +L+ + LA Sbjct: 64 DLLPRIKKARP-DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 122 AAPLPASAAAKPAAGAAVASAAAL 145 V +AA+ Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAM 146 Score = 47.1 bits (112), Expect = 2e-08 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 3/106 (2%) Query: 113 SVEHGLARGAAPLPASAAAKPAAGAAVASAAALPTLGDDPAVALAGQTTAAIPFDIPLRE 172 + E + +P S AA + + ++ ++ A+P Sbjct: 375 TREIIENELRSEIPDSP---IEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDR 431 Query: 173 ARDAFERAYFEYHLARENGSMTRVAEKTGLERTHLYRKLKQLGVEL 218 E L G+ + A+ GL R L +K+++LGV + Sbjct: 432 VLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSV 477
>cloacin#Cloacin signature. Length = 551 Score = 30.8 bits (69), Expect = 0.024 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 681 SGADGASGASGAGGEPTEHANAGGNPAGGGIAGGAAGTANNGSGAAAPGGM-PGANGAAM 739 +G GAS G +E+ GG G GG +G N G + GG G N +A+ Sbjct: 25 TGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAV 84 Query: 740 GTPPA 744 P A Sbjct: 85 AAPVA 89 Score = 30.8 bits (69), Expect = 0.026 Identities = 23/83 (27%), Positives = 27/83 (32%), Gaps = 14/83 (16%) Query: 677 PASASGADGASGASGAGGE-----------PTEHANAGGNPAG-GGIAGGAAGTANNGSG 724 P GAS SG E +G G G +GG +GT N S Sbjct: 24 PTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Query: 725 AAAPG--GMPGANGAAMGTPPAS 745 AAP G P + G S Sbjct: 84 VAAPVAFGFPALSTPGAGGLAVS 106
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 504 bits (1300), Expect = 0.0 Identities = 247/348 (70%), Positives = 294/348 (84%), Gaps = 2/348 (0%) Query: 1 MFGFLRSYFSNDLAIDLGTANTLIYMRGKGIVLDEPSVVSIRQEGGPNGKKTIQAVGKEA 60 M R FSNDL+IDLGTANTLIY++G+GIVL+EPSVV+IRQ+ K++ AVG +A Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRA-GSPKSVAAVGHDA 59 Query: 61 KQMLGKVPGNIEAIRPMKDGVIADFTVTEQMIKQFIKTAHESRMFSPSPRIIICVPCGST 120 KQMLG+ PGNI AIRPMKDGVIADF VTE+M++ FIK H + PSPR+++CVP G+T Sbjct: 60 KQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGAT 119 Query: 121 QVERRAIKEAAHGAGASQVYLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVGVISLG 180 QVERRAI+E+A GAGA +V+LIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEV VISL Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN 179 Query: 181 GIVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGSAFPGSEVKEMEVKGR 240 G+VY SVR+GGD+FDEAI+NY+RRNYG LIGE TAE IK EIGSA+PG EV+E+EV+GR Sbjct: 180 GVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGR 239 Query: 241 NLSEGIPRSFTISSNEILEALTDPLNQIVSSVKIALEQTPPELGADIAERGMMLTGGGAL 300 NL+EG+PR FT++SNEILEAL +PL IVS+V +ALEQ PPEL +DI+ERGM+LTGGGAL Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299 Query: 301 LRDLDRLLAEETGLPVLVAEDPLTCVVRGSGMALERMDKL-GSIFSYE 347 LR+LDRLL EETG+PV+VAEDPLTCV RG G ALE +D G +FS E Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 30.8 bits (69), Expect = 0.013 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 395 SNKIAKEIFVTIWDEKAADEGAADRIIEAKGLK-QISDTGALEAIIDEVLAANAKSVEEF 453 +N EIF I E D A KG+K ++SD LE + ++ L KS +EF Sbjct: 648 ANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDK--LENV-NKNLKDFDKSFDEF 704 Query: 454 RAGKDKAFNALVGQAMKATKGKANPQQVN 482 + GK+K F+ + +KA KG +N Sbjct: 705 KNGKNKDFSK-AEETLKALKGSVKDLGIN 732
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.9 bits (75), Expect = 0.002 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 9/107 (8%) Query: 70 FMRPIGGIVLGLYADRAGRKAALSLVILLMTFGIFLIAVAPPYAAIGIGGPLLIVLGRLL 129 M+ VLG +DR GR+ L + + ++A AP ++ +GR++ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIV 105 Query: 130 QGFSAGGEFGSATALLIEAAPLSRRGYYGSWQMASQAAALLFGSLVG 176 G + G A A + + R + + A ++ G ++G Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLG 151
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 26.8 bits (59), Expect = 0.029 Identities = 10/38 (26%), Positives = 17/38 (44%) Query: 102 NVDPVQEMVNMISASRSYQANVETLNTAKQLMLKTLTI 139 V+ +E N+ + Y AN + L TA + + I Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 34.2 bits (78), Expect = 0.001 Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 356 ISAPGSTNHGTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413 SA L S V+L + L Q+ Y ANAQ ++T + LIN+ Sbjct: 488 SSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 30.3 bits (68), Expect = 0.017 Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGST 36 +SGL A + L+ NNI++ N G+ T Sbjct: 7 AMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.2 bits (65), Expect = 0.018 Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 4 LIYTAMTGATQSLEQQSVVANNLANASTTGFRAQ 37 LI AM+G + + +NN+++ + G+ Q Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQ 36
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 1e-06 Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 213 TLKQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQM 260 L S VN+ +E N+ + Q+ Y N++ + T++ + + + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 40.3 bits (94), Expect = 5e-06 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 14/80 (17%) Query: 4 SLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQTELP 63 + A +G+NA QA ++ SNN+++ + G+ RQ + + L Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYT--------------RQTTIMAQANSTLG 48 Query: 64 SGLQLGTGVQQVATERLYTQ 83 +G +G GV +R Y Sbjct: 49 AGGWVGNGVYVSGVQREYDA 68
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 206 bits (526), Expect = 3e-69 Identities = 128/222 (57%), Positives = 156/222 (70%), Gaps = 7/222 (3%) Query: 25 AALAAAALALAGCAQIPREPITQQPMSAMPPMPPAMQAPGSIY---NPGYAG-RPLFEDQ 80 A + L+L GCA IP P+ Q SA P P A GSI+ P G +PLFED+ Sbjct: 10 AISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDR 69 Query: 81 RPRNVGDILTIVIAENINATKSSGANTNRQGNTSFDVPTAG-FLGGLF--NKANLSAQGA 137 RPRN+GD LTIV+ EN++A+KSS AN +R G T+F T +L GLF +A++ A G Sbjct: 70 RPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGG 129 Query: 138 NKFAATGGASAANTFNGTITVTVTNVLPNGNLVVSGEKQMLINQGNEFVRFSGIVNPNTI 197 N F GGA+A+NTF+GT+TVTV VL NGNL V GEKQ+ INQG EF+RFSG+VNP TI Sbjct: 130 NTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTI 189 Query: 198 SGQNSVYSTQVADARIEYSAKGYINEAETMGWLQRFFLNIAP 239 SG N+V STQVADARIEY GYINEA+ MGWLQRFFLN++P Sbjct: 190 SGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSP 231
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 363 bits (934), Expect = e-127 Identities = 158/367 (43%), Positives = 216/367 (58%), Gaps = 19/367 (5%) Query: 4 LAFAPAAARAERLKDLAQIQGVRDNPLIGYGLVVGLDGTGDQTMQTPFTTQTLANMLANL 63 L+ PA A R+KD+A +Q RDN LIGYGLVVGL GTGD +PFT Q++ ML NL Sbjct: 19 LSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNL 78 Query: 64 GISINNGSANGGGSSAMTNMQLKNVAAVMVTATLPPFARPGEAIDVTVSSLGNAKSLRGG 123 GI+ G +N KN+AAVMVTA LPPFA PG +DVTVSSLG+A SLRGG Sbjct: 79 GITTQGGQSN-----------AKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGG 127 Query: 124 TLLLTPLKGADGQVYALAQGNMAVGGAGASANGSRVQVNQLAAGRIAGGAIVERSVPNAV 183 L++T L GADGQ+YA+AQG + V G A + + + + R+ GAI+ER +P+ Sbjct: 128 NLIMTSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKF 187 Query: 184 AQMNGVLQLQLNDMDYGTAQRIVSAVNS----SFGAGTATALDGRTIQLTAPADSAQQVA 239 L LQL + D+ TA R+ VN+ +G A D + I + P + Sbjct: 188 KDSV-NLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRVA-DLTR 245 Query: 240 FMARLQNLEVSPERAAAKVILNARTGSIVMNQMVTLQNCAVAHGNLSVVVNTQPVVSQPG 299 MA ++NL V + AKV++N RTG+IV+ V + AV++G L+V V P V QP Sbjct: 246 LMAEIENLTVETD-TPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPA 304 Query: 300 PFSNGQTVVAQQSQIQLKQDNGSLRMVTAGANLAEVVKALNSLGATPADLMSILQAMKAA 359 PFS GQT V Q+ I Q+ + + G +L +V LNS+G +++ILQ +K+A Sbjct: 305 PFSRGQTAVQPQTDIMAMQEGSKV-AIVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSA 363 Query: 360 GALRADL 366 GAL+A+L Sbjct: 364 GALQAEL 370
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 227 bits (579), Expect = 4e-75 Identities = 124/297 (41%), Positives = 172/297 (57%), Gaps = 15/297 (5%) Query: 15 ALDVQGFDALRSKATAAAPREGVKMVAGQFDAMFTQMMLKSMRDATPSDGLLDSSSSKMY 74 A D Q + L++KA P ++ VA Q + MF QMMLKSMRDA P DGL S +++Y Sbjct: 12 AWDAQSLNELKAKA-GEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDGLFSSEHTRLY 70 Query: 75 TSMLDQQLAQQMSS-KGIGVADALTKQLLRNANVAPDAQGEGGLAAMNALAKAYANSNGA 133 TSM DQQ+AQQM++ KG+G+A+ + KQ+ + ++ + Y N + Sbjct: 71 TSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLETVVRYQNQALS 130 Query: 134 PGNGALAGTRGYSAASALTPPLKGNGNSAQADAFVEKMALAAQAASATTGIPARFIVGQA 193 P + + AF+ +++L AQ AS +G+P I+ QA Sbjct: 131 ------------QLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQA 178 Query: 194 ALESGWGKREIRGANGESSYNVFGIKATKGWTGRTVSAVTTEYVNGRPHRVVAQFRAYDS 253 ALESGWG+R+IR NGE SYN+FG+KA+ W G TTEY NG +V A+FR Y S Sbjct: 179 ALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSS 238 Query: 254 YEHAMTDYANLLKNNPRYASVLNAGHNAEGFAHGMQKAGYATDPHYAKKLISIMQQI 310 Y A++DY LL NPRYA+V A +AE A +Q AGYATDPHYA+KL +++QQ+ Sbjct: 239 YLEALSDYVGLLTRNPRYAAVTTAA-SAEQGAQALQDAGYATDPHYARKLTNMIQQM 294
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 231 bits (591), Expect = 4e-70 Identities = 162/444 (36%), Positives = 253/444 (56%), Gaps = 12/444 (2%) Query: 3 NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 62 ++L+N +SGLNAA L T NIS+ GY+ + + A+A+ + G++ GV Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 63 TVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTAGIATAITNYFTGLQTVA 122 V+R+Y+ +++NQL AAQTQ S L+ Y +++++N + + T+ +AT + ++FT LQT+ Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 123 NNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQIAQLNE 182 +NA DP+ARQ + ++ L +Q Q + VN + +V QIN+Y QIA LN+ Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 183 QIA--SASSQGQPPNQLLDQRDLAVSKLSQLAGVQV-VQSNGNYSVFLSGGQPLVVGNAS 239 QI+ + G PN LLDQRD VS+L+Q+ GV+V VQ G Y++ ++ G LV G+ + Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240 Query: 240 YQLATVASPSDPSELTI-VSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDPAQ 298 QLA V S +DPS T+ G AG+ + +P+ L G+LGG+L FRSQ LD + Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIE------IPEKLLNTGSLGGILTFRSQDLDQTR 294 Query: 299 AQLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVDGT 358 LG LA++FA N Q+ G D +G+ G FA+G PAV N N G + + D + Sbjct: 295 NTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDAS 354 Query: 359 QPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSFTV 418 +DY +S+D ++ +T R + T TP + + GL+L+ + TP DSFT+ Sbjct: 355 AVLATDYKISFDNNQWQVT-RLASNTTFTVTPDAN-GKVAFDGLELTFTGTPAVNDSFTL 412 Query: 419 LPTRGALDGFSLATANGSAIAAAS 442 P A+ + + + IA AS Sbjct: 413 KPVSDAIVNMDVLITDEAKIAMAS 436 Score = 83.1 bits (205), Expect = 9e-19 Identities = 46/105 (43%), Positives = 66/105 (62%) Query: 561 GTNDGRNALALSQLVNSKTMNNGTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQIT 620 G +D RN AL L ++ G + AYA V+ IGN + LK SSA Q +V Q++ Sbjct: 441 GDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLS 500 Query: 621 QAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTANSVFQTVLGL 665 QQS+SGVN +EE NL ++QQ Y ANA+V+QTAN++F ++ + Sbjct: 501 NQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLAGELLIN#Flagellin signature. Length = 507 Score = 41.2 bits (96), Expect = 6e-06 Identities = 55/369 (14%), Positives = 113/369 (30%), Gaps = 10/369 (2%) Query: 16 MNDQQAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLAQYTQNQTIVQTALQT 75 +N Q+ ++ +++SSG+ + + D+ A A + ++ L Q ++N + QT Sbjct: 17 LNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQT 76 Query: 76 EDTTLTSVNDVLNAAYQALMHAGDGGLSDSDRAALAAQIQGSRDHLLTLANTADGAGNYL 135 + L +N+ L + + A +G SDSD ++ +IQ + + ++N G + Sbjct: 77 TEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKV 136 Query: 136 FAGFQPTTQPFSNKPGGGVTY------AGDYGARAVQIADTRTVSQGDNGANVFMSVPFL 189 + G +T G + + + GD ++ + Sbjct: 137 LSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYD 196 Query: 190 GSLPVPAAGASNTGTGTIGAVSITNPSDPTNTHQFTITFGGTAAAPTYTVTDNSVTPPTT 249 + +G + + T A T D T +T Sbjct: 197 TYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKST 256 Query: 250 TAAQAYSSGQGINLGGQTVAVSGKPAVGDTFTVTPAPQAGTDVFATLD----TVIAALKS 305 + G GG+ V T V T++ T+ A + Sbjct: 257 AGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADIT 316 Query: 306 PVGNSQTASTALTNTMATASTKLMNTMTNVLTVQASVGGRLQEVKAMQAVTTTNTLQTTN 365 + A+T ++ S + T S E + T+ Sbjct: 317 AGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAE 376 Query: 366 SLSNLTDTN 374 +N Sbjct: 377 YTANAAGDK 385
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.3 bits (63), Expect = 0.021 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 110 YVQQGMMPVTAGLVVASAVLISEASNRSALQWGITAAVAAL-AYRTRVHPLWLLAGGALA 168 Y G++ T GL +A+LI E + + G A L A R R+ P+ + + + Sbjct: 925 YFMVGLL-TTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFIL 983 Query: 169 GLV 171 G++ Sbjct: 984 GVL 986
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 68.3 bits (167), Expect = 6e-15 Identities = 55/252 (21%), Positives = 85/252 (33%), Gaps = 55/252 (21%) Query: 16 LAIAGQQAMAQSSVTLWGVADVSLRYLSNSNAQNDGRFFM----TNGAITNSRIGLHGSE 71 L +A A + VTL+G + S S A N + T S+IG G E Sbjct: 8 LTLAALPVAAMADVTLYGTIK-AGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQE 66 Query: 72 DLGGGLKAIFNLESGVNLQDGAFSDSKRIFNRAAYVGLTSQYGTVTLGRQKTVLFDLLSD 131 DLG GLKAI+ +E ++ NR +++GL +G + +GR +VL D Sbjct: 67 DLGNGLKAIWQVEQKASIAGT----DSGWGNRQSFIGLKGGFGKLRVGRLNSVLKD---- 118 Query: 132 TYDPLTVGNYLENAW---LPVALGAGL-YADN---SVKYRGT-FGGLTIGAMYSFGTDST 183 N W + + SV+Y F GL+ Y+ ++ Sbjct: 119 --------TGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDNAG 170 Query: 184 ATGAGGFSGQLPGHMGAG-NMYGFSLSYVAGPVSVAAGVQQSSDNSNRKQTI-------- 234 + + H G GF + Y G + I Sbjct: 171 RHNSESY------HAGFNYKNGGFFVQY--------GGAYKRHHQVQENVNIEKYQIHRL 216 Query: 235 ---YHANVVYAF 243 Y + +YA Sbjct: 217 VSGYDNDALYAS 228
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 71.4 bits (175), Expect = 5e-16 Identities = 80/358 (22%), Positives = 130/358 (36%), Gaps = 48/358 (13%) Query: 18 VAALAAGASGACAQSSVQLYGQVDEWIGAQKFPGGQRAWGVQGGGMST-----SYWGLRG 72 + AL A A + V LYG + + + A + S G +G Sbjct: 5 LIALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKG 64 Query: 73 TEDLGGGYQAIFTLEDFFRAQNGHYGRFDGDTFFGRNAYVGLATPYGTVRAGRLTTQLFI 132 EDLG G +AI+ +E Q D R +++GL +G +R GRL + L Sbjct: 65 QEDLGNGLKAIWQVE-----QKASIAGTDSGWG-NRQSFIGLKGGFGKLRVGRLNSVLK- 117 Query: 133 STILFNPFIDSYVFSPMVYHVFLGLGTFPTYTTDQGVVGDSGWNNAIDYTSPSFGGLNAA 192 T NP+ + LG + ++ + Y SP F GL+ + Sbjct: 118 DTGDINPWDSKSDY----------LGVNKIAEPEARLIS-------VRYDSPEFAGLSGS 160 Query: 193 AMYALGNTAGDNRSKKWSGQLNYSSGSFAATAVYQYVNFNGGPGDLGALVSGMKSQGVAQ 252 YAL + AG + S+ + NY +G F Y + V+ K Q + + Sbjct: 161 VQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRH----HQVQENVNIEKYQ-IHR 215 Query: 253 LGLSYDFKLAKIYA-QYMYTKNELNTGSWHVNTAQGGVSVPL----GPGSALASYAYS-- 305 L YD +YA + ++ + + +Q V+ L G + SYA+ Sbjct: 216 LVSGYD--NDALYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFK 273 Query: 306 --RDSGGLDQTRRTWALGYDYPLSKRTDVYAAYM---NDRYSGMSGGDTFGAGIRAKF 358 D+ + +G +Y SKRT + + G G+R KF Sbjct: 274 GSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVGLRHKF 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 26.7 bits (59), Expect = 0.042 Identities = 8/41 (19%), Positives = 17/41 (41%) Query: 15 LDAIDRELLRTLADDARQPVSELARRVGLSAPSTADRLRRL 55 L ++ L+ R + A +GL+ + ++R L Sbjct: 433 LAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>adhesinb#Adhesin B signature. Length = 310 Score = 29.0 bits (65), Expect = 0.036 Identities = 10/32 (31%), Positives = 13/32 (40%) Query: 1 MKRVRLAALLGASVFAAAGCGSDEPKTPGASD 32 MK+ R LL + A C S + T S Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSS 32
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 39.3 bits (91), Expect = 5e-06 Identities = 45/191 (23%), Positives = 65/191 (34%), Gaps = 16/191 (8%) Query: 2 KTVLIVGASRGIGREFVGQYLHDGWRVIATARDAAAL------AALDALGARALALDVAQ 55 K I GA++GIG G + A + L +A A A DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 56 PDDIAAFDARLGG--AALDAAVVVSGVYGPRTAGVEPIGVEDFDAVMHTNVLGPMLLMPI 113 I AR+ +D V V+GV R + + E+++A N G Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVL--RPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 114 LLPRVEASRGVLAVLSSKMGSIGEATGTTGW-LYRASKAAVNDALRIASLQARHAA--CI 170 + + R V +GS T Y +SKAA + L+ C Sbjct: 127 VSKYMMDRRSGSIVT---VGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 171 ALHPGWVRTDM 181 + PG TDM Sbjct: 184 IVSPGSTETDM 194
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 29.0 bits (65), Expect = 0.013 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 28/129 (21%) Query: 93 DDLLAVLAHMRALPGHADLPLVLAGFSFGTFVLSHVGKRLRDAGQAIERMVF---VGTAA 149 D LA++ +A G ++L G+SFG V+ V + + ++ Sbjct: 101 QDTLAIIDKYQAEFGT--QKVILIGYSFGAEVIPFVLNEMPARYRKNVLGAVLLSPSQSS 158 Query: 150 ------SRW--------------QVAAVPEDTIV-IHGENDDTVPIASVYDWARPQELPV 188 S +V ++ ++G+ DD + + + V Sbjct: 159 DFEIHVSEMVTSDNQSARYLTLPEVNKQTTVPMLCLYGKEDDAP--LHLCPEVKQPNVTV 216 Query: 189 IVIPGAEHF 197 + + G F Sbjct: 217 MELSGGHSF 225
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 27.9 bits (62), Expect = 0.007 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 32 GAPVWATRSNDVHDYFLSPGATLKLRRGERLWLSADGATSACVSFSAIAPPQQAALRGVA 91 G ++ ++N +DY TLK +W + V I ++ L A Sbjct: 467 GIDIYVGKNNIQNDYL-----TLKFANKHDIWFHTKNIPGSHVIVKNIMDIPESTLLEAA 521 Query: 92 RFASWLS 98 A++ S Sbjct: 522 NLAAYYS 528
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.006 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%) Query: 7 TLLVDILDA--GNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRT 51 L++ L A GN KAA L ++R + ++ +L G+ + R + Sbjct: 439 PLILAALTATRGNQIKAADLLGLNRNTLRKKIREL----GVSVYRSS 481
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 78.5 bits (193), Expect = 4e-18 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 40/207 (19%) Query: 81 QRRAAPQLPIDPDDP-----FYQFFRHFYGQIPGMGGGRQPQPDDQPSTSLGSGFIISAD 135 ++R + + +D I Q + T + SG ++ Sbjct: 62 EQREHANVILPNNDRHQITDTTNGHYAPVTYI---------QVEAPTGTFIASGVVV-GK 111 Query: 136 GYILTNAHVIDGANVVTVKLTDKR-----------EYKA-KVVGADKQSDVAVLKIDA-- 181 +LTN HV+D + L + A ++ + D+A++K Sbjct: 112 DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNE 171 Query: 182 ------SGLPIVKIGDPAQSKVGQWVVAIGSPYGFDNTVTSGIISAKSRALPDENYTPFI 235 + + + A+++V Q + G P +K + + + Sbjct: 172 QNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMW---ESKGKITYLKGE--AM 226 Query: 236 QTDVPVNPGNSGGPLFNLNGEVIGINS 262 Q D+ GNSG P+FN EVIGI+ Sbjct: 227 QYDLSTTGGNSGSPVFNEKNEVIGIHW 253
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 126 bits (317), Expect = 2e-38 Identities = 81/209 (38%), Positives = 115/209 (55%), Gaps = 1/209 (0%) Query: 1 MARRTKEEALATRDRILDAAEHVFFEKGVSHTSLADIAQHAGVTRGAIYWHFASKSELFD 60 MAR+TK+EA TR ILD A +F ++GVS TSL +IA+ AGVTRGAIYWHF KS+LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AMFDRVLLPIDELKAGT-GEPHADPLGRIREILIWCLLGAARDPQLRRVFSILFMKCEYV 119 +++ I EL+ + DPL +REILI L + + R + I+F KCE+V Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 120 ADMGPLLQRNREGMRDALRNIEADLAQGVANGQLPADLDTWRATLMLHTLVSGFVRDMLM 179 +M + Q R ++ IE L + LPADL T RA +++ +SG + + L Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 180 LPGEIDAERHAEKLVDGCFDMLRTSPAMR 208 P D ++ A V +M P +R Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLR 209
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.7 bits (98), Expect = 4e-06 Identities = 42/266 (15%), Positives = 80/266 (30%), Gaps = 75/266 (28%) Query: 92 KIDPAPYIAQLNSAKATLAKAQANLATQNALVARYKVLVAANAVSKQQYDDAVAAQGQAA 151 +++ A+ + A + + + + + + + L+ A++K + +A Sbjct: 206 ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 152 ADVGAGKAAV-------------------------------------------ETAQINL 168 ++ K+ + + Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325 Query: 169 GYTDVVSPITGRV-GISQVTPGAYVQASQATLMSTVQQLDPVYVDLTQSSLDGLKLRQDI 227 + + +P++ +V + T G V ++ TLM V + D + V + D + Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALVQNKDIGFINVG- 383 Query: 228 QSGRIK-------TEGPGAAKVTLILEDGKPYPERGKLQFSDVTVDQTTGSVT--IRAI- 277 Q+ IK G KV I D DQ G V I +I Sbjct: 384 QNAIIKVEAFPYTRYGYLVGKVKNI--------------NLDAIEDQRLGLVFNVIISIE 429 Query: 278 -----FPNKQRVLLPGMFVRARIEEG 298 NK L GM V A I+ G Sbjct: 430 ENCLSTGNKNIPLSSGMAVTAEIKTG 455 Score = 31.7 bits (72), Expect = 0.006 Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 20/122 (16%) Query: 1 MRVERVPYRLITVATAAVFLAACGKKESAPPPQTPEVGVVTVQPQSVPVVSELPGRTSAY 60 R V Y ++ A L+ G+ E G +T +S + Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQVEIVATAN----GKLTHSGRSKEIKPIENSIVKEI 110 Query: 61 LVAQVRARVDGIVLRREFTEGSDVKAGQRLYKIDPAPYIAQLNSAKATLAKAQANLATQN 120 +V EG V+ G L K+ A +++L +A+ Sbjct: 111 IVK----------------EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 121 AL 122 L Sbjct: 155 IL 156
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1270 bits (3288), Expect = 0.0 Identities = 673/1035 (65%), Positives = 822/1035 (79%), Gaps = 2/1035 (0%) Query: 1 MAKFFIDRPIFAWVIAIILMLAGVAAIFTLPIAQYPTIAPPSIQITANYPGASAKTVEDT 60 MA FFI RPIFAWV+AIILM+AG AI LP+AQYPTIAPP++ ++ANYPGA A+TV+DT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQNKLSLATPILPQ 120 VTQVIEQ M+G+DN +YMSSTSD +G+ TIT+TF GT+PDIAQVQVQNKL LATP+LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 VVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRINGVGTVTLFGS 180 VQQ G+SV KSSSS+L+V F S++ + D+++YVAS+VKD +SR+NGVG V LFG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGTVLQATITEATLL 240 QYAMRIWLD L Y LTPVDV + + QN QIA GQLGGTPA+PG L A+I T Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANAL 300 + PE+FG + L+VN DGS VRLKDVA++ LGGE YN + NG+P A LGI+LAT ANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 ATAKAVRAKIDEMSAYFPHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQ 360 TAKA++AK+ E+ +FP G+ V YPYDTTPFV+LSI EVVKTL E I+LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENVERVM 420 N+RAT+IPTIAVPVVLLGTFAI++ G+SIN L+MFG+VLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AEEGLPPKEATRKAMGQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVL 480 E+ LPPKEAT K+M QI GALVG+A+VLSAVF+P+AF GGS GAIYRQFS+TIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALILTPALCATILKPIPQGHHEEKKGFFGWFNRTFNSSRDKYHVGVHHVIKRSGRW 540 SVLVALILTPALCAT+LKP+ HHE K GFFGWFN TF+ S + Y V ++ +GR+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 LIIYLAVIVAVGLLFVRLPKSFLPDEDQGLMFVIVQTPSGSTQETTARTLANISDYLLTQ 600 L+IY ++ + +LF+RLP SFLP+EDQG+ ++Q P+G+TQE T + L ++DY L Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 601 EKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSSDQKVQALIGRMFGRYAGYKDA 660 EK VES FTVNGFSF+G+ QN+G+ FV LK + +R + +A+I R +D Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 661 LVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD-STLRGVRPNGL 719 VIPFN P+I ELGTA GFDFEL D AGLGHDAL ARNQLLGMAA+ ++L VRPNGL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 720 NDTPQYKVDIDREKANALGVTADAIDQTFSIAWASKYVNNFLDTDGRIKKVYVQSDAPFR 779 DT Q+K+++D+EKA ALGV+ I+QT S A YVN+F+D GR+KK+YVQ+DA FR Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID-RGRVKKLYVQADAKFR 779 Query: 780 MTPEDMNIWYVRNGSGGMVPFSAFATGHWTYGSPKLERYNGISAMEIQGQAAPGKSTGQA 839 M PED++ YVR+ +G MVPFSAF T HW YGSP+LERYNG+ +MEIQG+AAPG S+G A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 840 MTAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPILYAISILVVFLCLAALYESWSIPFS 899 M ME LA KLP GIGY WTG+S+QE SG+QAP L AIS +VVFLCLAALYESWSIP S Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 900 VIMVVPLGVIGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQQTEKMGP 959 V++VVPLG++G LLAATL +NDV+F VGLLTT+GLSAKNAILIVEFA++L + E G Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 960 IEAALEAARLRLRPILMTSLAFILGVMPLAISNGAGSASQHAIGTGVIGGMITATFLAIF 1019 +EA L A R+RLRPILMTSLAFILGV+PLAISNGAGS +Q+A+G GV+GGM++AT LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1020 MIPMFFVKVRAVFSG 1034 +P+FFV +R F G Sbjct: 1020 FVPVFFVVIRRCFKG 1034
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.021 Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 8/112 (7%) Query: 359 ATERQKALDAQTAELRTKTEQALASVRQADSQLSQLEG--KLAD----AQTAQTALQQQY 412 +++ LD + AE T + + + S+L+ L A+ A + +Y Sbjct: 202 KYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKY 261 Query: 413 QDLSRNRDAWM--IEEVGQMLSSASQQLLLTGNTQLALIALQNADARLASSQ 462 + + +E++ + SA ++ L I + Sbjct: 262 VEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL 313
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.1 bits (65), Expect = 0.041 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 12/140 (8%) Query: 73 VGYFLFEVPSNVILHKVGARVWIARIMVTWGIIS---ALTMFVSTPAMFYTM--RFLLGV 127 + L + K+ ++ I R+++ II+ ++ FV + RF+ G Sbjct: 56 TAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGA 115 Query: 128 AEAGFFPGVILYLTYWYPAHRRGRMTTLFMTAVALSGVVGGPISGYILKTFDGMNGWRGW 187 A F V++ + + P RG+ L + VA+ VG I G I W Sbjct: 116 GAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI-------HW 168 Query: 188 QWLFLLEGVPSVLVGILLLF 207 +L L+ + + V L+ Sbjct: 169 SYLLLIPMITIITVPFLMKL 188
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 115 bits (288), Expect = 3e-33 Identities = 73/252 (28%), Positives = 115/252 (45%), Gaps = 6/252 (2%) Query: 3 LSGKTAVVTGAGSGFGEGIAKTFAREGACVVVNDLHAAAAERVASEIALAGGRALAIAGD 62 + GK A +TGA G GE +A+T A +GA + D + E+V S + A A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 VSRGEDWQALRDAALAAFGSVQVVVNNAGTTHRNKPVLDITEAEYDRVYAINMKSLFWSV 122 V + G + ++VN AG + +++ E++ +++N +F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 123 QTFVPYFRGAGGGAFVNIASTAAVRPRPGLVWYNSTKGAMLTASKTLAAELGADRIRVNC 182 ++ Y G+ V + S A PR + Y S+K A + +K L EL IR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 183 VNPVLGETGLTSEFMGVPDTSENR-----ARFVATIPLGRLSTPQDIANAALYLASDEAA 237 V+P ET + + +E F IPL +L+ P DIA+A L+L S +A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 238 FVTGACLEVDGG 249 +T L VDGG Sbjct: 245 HITMHNLCVDGG 256
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.3 bits (73), Expect = 0.002 Identities = 29/211 (13%), Positives = 57/211 (27%), Gaps = 18/211 (8%) Query: 106 AQVAAAAAAQREGAPVTGRVKRVDAERASGTPTPRSPRRATRATAEALDAGTPADEGEAT 165 A P E P P +P T AE + + T Sbjct: 997 ITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN------SKQESKT 1050 Query: 166 QAPKERKTTEAAKTSKTVRLSKAPKPSKPSKPSKPSKPSKPSKPSKPSKPSKPSKPSKPS 225 E+ TE ++ V ++ ++ ++ +K ++ ++ + + K Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 226 K-----------PSKPSKAS-KASKPSKPSKPSTPPKPPKPSTQIAATAASRRTKTVRAP 273 K P S+ S K + + P + P+ I + T Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170 Query: 274 AANTTARANASPNAGTAVSAAPPRGARAKQN 304 A T+ P + +N Sbjct: 1171 PAKETSSNVEQPVTESTTVNTGNSVVENPEN 1201
>PF01540#Adhesin lipoprotein Length = 475 Score = 28.9 bits (64), Expect = 0.015 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 11 RTGRALADLLLKQQDFEVTALVRRPDFA--LPGAKVVVADLTGDFSSAFN-GITHAIYAA 67 + G+ AD LKQ + L + PD++ L +A+ T F A + G AI + Sbjct: 35 KNGKEKADAALKQANALAEELKKNPDYSKILETLNKEIAEATKSFKEAGSYGDYPAIISK 94 Query: 68 GSAESEGATEEEQIDRDAVARAAD 91 SA E A E+Q A + AD Sbjct: 95 LSAAVENAKSEQQKVDQANKKIAD 118
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 135 bits (342), Expect = 6e-37 Identities = 84/396 (21%), Positives = 159/396 (40%), Gaps = 16/396 (4%) Query: 27 VFMNVLDTSIANVAIPTISGDLGVSSDQGTWVITSFAVANAISVPLTGWLTDRIGQVRLF 86 F +VL+ + NV++P I+ D WV T+F + +I + G L+D++G RL Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 87 LASIILFVISSWMCGLAPT-LPFLLASRVLQGAVAGPMIPLSQALLLSSYPRAKAPMALA 145 L II+ S + + + L+ +R +QGA A L ++ P+ A Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 146 LWSMTTLIAPVAGPILGGWISDNYSWPWIFYVNIPVGIAAAAVTWMIYRSRESAVRRAPI 205 L + GP +GG I+ W ++ IP+ I V +++ ++ + Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPM-ITIITVPFLMKLLKKEVRIKGHF 199 Query: 206 DGVGLALLVIWVGSLQIMLDKGKDLDWFASTTIVVLALTALIAFAFFVVWELTAEHPVVD 265 D G+ L+ + G + ML F ++ + + ++++F FV P VD Sbjct: 200 DIKGIILMSV--GIVFFML--------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 266 LSLFRMRNFSGGTIALSVGYGLYFGNLVLLPLWLQTQIGYTATDAG-LVMAPVGFFAILL 324 L + F G + + +G G + ++P ++ + + G +++ P I+ Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 325 SPLTGKFLSRTDPRYIATAAFLTFALCFWMRSRYTTGVDEWSLMAPTFVQGIAMAGFFIP 384 + G + R P Y+ ++ F S + + FV G ++ Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFTKTV 368 Query: 385 LVSITLSGLPGHRIPAASGLSNFVRIMCGGIGTSIF 420 + +I S L A L NF + G G +I Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIV 404
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 71.4 bits (175), Expect = 1e-15 Identities = 36/270 (13%), Positives = 85/270 (31%), Gaps = 28/270 (10%) Query: 94 ADSQVALQQAEANLAQTVRQVRGLYVNDDQYRAQVALRQSDLS--------------KAQ 139 + Q Q E NL + + + ++Y + +S L Sbjct: 196 STWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVL 255 Query: 140 DDLRRRLAVAQTGAVSQEEISHARDAVKAAQASLDAAGQQLASNRALTANTTVADHPNVL 199 + + + V + ++ + +A+ Q + L N+ Sbjct: 256 EQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN-EILDKLRQT--TDNIG 312 Query: 200 AAAAKVRDAYLNNARNTLPAPVTGYVAKRSVQ-VGQRVSPGTPLMSVVPLNAV-WVDANF 257 ++ + + APV+ V + V G V+ LM +VP + V A Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALV 372 Query: 258 KEVQLKHMRIGQPVELTADIYGSSVKYHGKVIGFSAGTGAAFSLLPAQNATGNWIKVVQR 317 + + + +GQ + + + + +G ++G + + +V Sbjct: 373 QNKDIGFINVGQNAIIKVEAFPYTR--YGYLVG-------KVKNINLDAIEDQRLGLVFN 423 Query: 318 LPVRVELDPKELKEHPLRIGLSMQVDVDIK 347 + + +E + + + M V +IK Sbjct: 424 VIISIEENCLSTGNKNIPLSSGMAVTAEIK 453 Score = 47.1 bits (112), Expect = 8e-08 Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 28/207 (13%) Query: 29 VIAIAAIAYGLYYLLVARFHETTDDAYVNGNVV------QITPQVTGTVIAVKADDTQTV 82 ++A + + + +++ + A NG + +I P V + + ++V Sbjct: 59 LVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESV 118 Query: 83 KSGDPLVVLDPADSQVALQQAEANLAQT---------------VRQVRGLYVNDDQYRAQ 127 + GD L+ L ++ + +++L Q + ++ L + D+ Y Sbjct: 119 RKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQN 178 Query: 128 VA----LRQSDLSKAQ-DDLRRRLAVAQ-TGAVSQEEISHARDAVKAAQASLDAAGQQLA 181 V+ LR + L K Q + + + + E + + +L Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238 Query: 182 SNRALTANTTVADHPNVLAAAAKVRDA 208 +L +A H VL K +A Sbjct: 239 DFSSLLHKQAIAKH-AVLEQENKYVEA 264
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 171 bits (434), Expect = 7e-48 Identities = 102/435 (23%), Positives = 172/435 (39%), Gaps = 62/435 (14%) Query: 5 LRNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVAE--RVMDSNDIEKERGITILAKNCA 62 + NI ++AHVD GKTTL + LL SG E V + D+ +E++RGITI + Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 63 VEYEGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVEGPMPQTRFVTKKALALGLK 122 ++E T +NI+DTPGH DF EV R LS++D +LL+ A +G QTR + +G+ Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 123 PIVVINKIDRPGARIDWV-------------INQTFDLFDKLGATE----EQLDFPIV-- 163 I INKID+ G + V I Q +L+ + T EQ D I Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 164 -----------------YASGLNGY---ASLDP-----AARDGDMRPLFEAILQHVPVRP 198 + SL P A + + L E I Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSST 242 Query: 199 ADPDAPLQLQITSLDYSTYVGRIGVGRITRGRIKPGQPVVMRFGLEGDVLNRKINQVLSF 258 + L ++ ++YS R+ R+ G + V R + + KI ++ + Sbjct: 243 HRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSV--RISEKEKI---KITEMYTS 297 Query: 259 QGLERVQVDSAEAGDIVLINGIEDVGIGATICAVEAPEALPMITVDEPTLTMNFLVNSSP 318 E ++D A +G+IV++ E + + + + + I P L + Sbjct: 298 INGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQ 356 Query: 319 LAGREGKFVTSRQIRDRLMKELNHNVALRVKDTGDETVFEVSGRGELHLTILVENMRRE- 377 + D L++ V E + +S G++ + + ++ + Sbjct: 357 QREMLLDALLEISDSDPLLR-------YYVDSATHEII--LSFLGKVQMEVTCALLQEKY 407 Query: 378 GYELAVSRPRVVMQE 392 E+ + P V+ E Sbjct: 408 HVEIEIKEPTVIYME 422 Score = 33.7 bits (77), Expect = 0.002 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 1/100 (1%) Query: 387 RVVMQEIDGVKHEPYELLTVDLEDEHQGGVMEELGRRKGEMLDMVSDGRGRTRLEYRIPA 446 V+++ EPY + E+ + + ++D L IPA Sbjct: 525 EQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQL-KNNEVILSGEIPA 583 Query: 447 RGLIGFQSEFLTLTRGTGLMSHIFDSYAPVKEGSVGERRN 486 R + ++S+ T G + Y V + R Sbjct: 584 RCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPVCQPRR 623
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.028 Identities = 8/83 (9%), Positives = 26/83 (31%), Gaps = 3/83 (3%) Query: 48 EVPAPAAGVLAQVLQNDGDTVVADQVIATID---TEAKAGAAAAAAGAADVQPAAAPVAA 104 E+ ++ +++ +G++V V+ + EA ++ A ++ + + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 105 PAPAAQPAAAAASSTAAASPAAS 127 + S Sbjct: 158 RSIELNKLPELKLPDEPYFQNVS 180
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.0 bits (163), Expect = 3e-15 Identities = 21/83 (25%), Positives = 35/83 (42%) Query: 4 RQASRQSGGTKARILDAAEDLFIEHGFEAMSMRQITSRAAVNLAAVNYHFGSKEALIHAM 63 R+ +++ T+ ILD A LF + G + S+ +I A V A+ +HF K L + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 64 LSRRLDQLNEERLRILDRFDAQL 86 + E L +F Sbjct: 63 WELSESNIGELELEYQAKFPGDP 85
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 60.2 bits (146), Expect = 4e-12 Identities = 58/261 (22%), Positives = 103/261 (39%), Gaps = 12/261 (4%) Query: 59 IGALIFGRLADHFGRRPTLMINIACYSLLELASGFAPSLAALLVLRTLFGVAMGGEWGVG 118 A + G L+D FGRRP L++++A ++ AP L L + R + G+ G V Sbjct: 58 ACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVA 116 Query: 119 SALTMETVPPRARGAVSGLLQAGYPSGYLLASVVFGLLYPYIGWRGMFMIGVLPALLVLY 178 A + R G + A + G + V+ GL+ + F L L L Sbjct: 117 GAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLT 176 Query: 179 VRAKVPES-PAWKQMEKRARPGLVATLKQNWKLSIYAVVLMTAF--NFFSHGTQDLYPTF 235 +PES ++ +R +A+ + +++ A ++ F L+ F Sbjct: 177 GCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIF 236 Query: 236 LREQHHFDPHTVSWITIVLNI-GAIVGGLTFGWLSERIGRRRAI---FIAAMIALPVLPL 291 ++ H+D T+ I ++ + G ++ R+G RRA+ IA +L Sbjct: 237 GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAF 296 Query: 292 ----WAFSTGALALAAGAFLM 308 W + LA+G M Sbjct: 297 ATRGWMAFPIMVLLASGGIGM 317
>PF06917#Periplasmic pectate lyase Length = 555 Score = 26.0 bits (57), Expect = 0.041 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%) Query: 52 NWSALAEIRRRLHGMYWKRRRIGVWLFSFWDRSDAAE 88 +W L R HG Y K+R V+ +D + AE Sbjct: 173 DWKTLDLGR---HGNYSKQRDPQVFTHPRYDVVNPAE 206
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 26.5 bits (58), Expect = 0.042 Identities = 13/37 (35%), Positives = 18/37 (48%) Query: 73 ALSARPIPLPCAARHGTPATLAAFGRMGSRPLVHSRR 109 A SA+P+P P +G+ A G +PL RR Sbjct: 34 ATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDRR 70
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.6 bits (149), Expect = 6e-14 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 10/203 (4%) Query: 11 RLTREQSKDLTRERLLSAAHAIFTKKGYVAASVEDIASAAGYTRGAFYSNFRSKAELLIE 70 R T++++++ TR+ +L A +F+++G + S+ +IA AAG TRGA Y +F+ K++L E Sbjct: 3 RKTKQEAQE-TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 71 LLKRDHEEAEADLQKIFE--SGGTREQMEA---HALEYYSQFFRNNPAFLLWGEAKLQAT 125 + + + G + H LE R + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 126 RDAKFRARFNEFVKEKRDRFTHYILTFAERVGTPLLLPADVLALGLMSLCDGVQSYHAAD 185 A + E DR + E P L A+ + G+ Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 186 PRHVTGDAAQQVLAGFFARVVLA 208 P+ D ++ A + ++L Sbjct: 182 PQSF--DLKKE--ARDYVAILLE 200
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.7 bits (85), Expect = 1e-04 Identities = 30/200 (15%), Positives = 59/200 (29%), Gaps = 32/200 (16%) Query: 1 MNRSGSRAALLIGVALIAAACHRKEAAPSAPRPVVAVPAQADGAAAAVSLPGEIQPRYAT 60 + SR L+ ++ + +VA A+G EI+P Sbjct: 49 IETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVAT---ANGKLTHSGRSKEIKP---- 101 Query: 61 PLSFRIAGKLVER-KVRLGDIVKKGQVVALLDTSDVARSAASAQAQLDAATHALTFAQQQ 119 I +V+ V+ G+ V+KG V+ L A+A +L A+ + Sbjct: 102 -----IENSIVKEIIVKEGESVRKGDVLLKLTALG-------AEADTLKTQSSLLQARLE 149 Query: 120 RERDRA--QARENLIAPAQLEQTENAYASARAQRDQAAQQLA----------LAKNQLQY 167 + R + ++ E P E + + + L + +L Sbjct: 150 QTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL 209 Query: 168 ATLVADHAGYITAEQADTGQ 187 A+ + Sbjct: 210 DKKRAERLTVLARINRYENL 229 Score = 34.8 bits (80), Expect = 5e-04 Identities = 10/71 (14%), Positives = 27/71 (38%) Query: 100 ASAQAQLDAATHALTFAQQQRERDRAQARENLIAPAQLEQTENAYASARAQRDQAAQQLA 159 + A+++ + + + + + + IA + + EN Y A + QL Sbjct: 217 LTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLE 276 Query: 160 LAKNQLQYATL 170 ++++ A Sbjct: 277 QIESEILSAKE 287
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 432 bits (1113), Expect = e-136 Identities = 223/1062 (20%), Positives = 423/1062 (39%), Gaps = 75/1062 (7%) Query: 13 LSAWALRHQALVVYLIALATIAGILAYSRLAQSEDPPFTFRVMVIRTFWPGATARQVQEQ 72 ++ + +R L + +AG LA +L ++ P + + +PGA A+ VQ+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 73 VTDRIGRKLQEMPAIDYLRSYS-RPGESMLFFAMKDSAPVKDVPQTWYQVRKKVGDISMT 131 VT I + + + + Y+ S S G + + QV+ K+ + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQV---QVQNKLQLATPL 117 Query: 132 LPPGVQGP-FFNDEFGDVYTNIYTLEGDG--FSPAQLHDYAD-QLRVVLLRVPGVAKVDY 187 LP VQ ++ Y + D + + DY ++ L R+ GV V Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 188 FGDPDQRIFVEIDNTRLARLGISPQQIAQAINAQNDVASPGVLTAAHD------RVFIRP 241 FG + + +D L + ++P + + QND + G L I Sbjct: 178 FG-AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 242 SGQYESVAAIADTLIRVN--GRTFRLGELATIKRGYDDPPVTQMRTIGRDTNGRAVLGIG 299 ++++ +RVN G RL ++A ++ G + + NG+ G+G Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG------GENYNVIARINGKPAAGLG 290 Query: 300 VTMQPGGDVIRLGKALDASAKALQAQLPAGLALTEVSSMPHAVARSVDDFLEAVAEAVAI 359 + + G + + KA+ A LQ P G+ + V S+ + ++ + EA+ + Sbjct: 291 IKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIML 350 Query: 360 VLIVSLVSLG-LRTGMVVVISIPVVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAI 418 V +V + L +R ++ I++PVVL T + F ++ +++ +VLA+GLLVDDAI Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAI 410 Query: 419 IAVEMMA-VKLEQGFSRARAAAFAYTSTAFPMLTGTLVTVSGFLPIALAKSSTGEYTRSI 477 + VE + V +E A + + ++ +V + F+P+A STG R Sbjct: 411 VVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQF 470 Query: 478 FEVSAIALIASWFAAVVLIPLLGYHMLPERKHPRQDAAGAPHAP-DAAHDHAHGHDIYDT 536 A+ S A++L P L +L + G + DH+ Sbjct: 471 SITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHS-------V 523 Query: 537 RFYTRLRVWIKWCIERRFIVLAITIALFVVALAGFSLVPQQFFPSSDRPELLVDLRLPEG 596 YT + + L I + + F +P F P D+ L ++LP G Sbjct: 524 NHYTNS---VGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAG 580 Query: 597 ASFNATLKEAERLEKLIAK--RPEIDHAVNFVGSGAPRFYLPLDQQLQLPNFAQFVITAK 654 A+ T K +++ K + ++ G Q N ++ K Sbjct: 581 ATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSG---------QAQNAGMAFVSLK 631 Query: 655 SVDAR---EKLSAWLAPVLREQFPAARTRISRLENGPPV-------GYPVQ-FRVSGDSI 703 + R E + + + + R N P + G+ + +G Sbjct: 632 PWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGH 691 Query: 704 ATVRAIAEKVAATMR---ADARATNVQFDWDEPAERSVRFELDQHKARELNVSSQDVASF 760 + ++ A + D + E+DQ KA+ L VS D+ Sbjct: 692 DALTQARNQLLGMAAQHPASLVSVRPNGLEDTA---QFKLEVDQEKAQALGVSLSDINQT 748 Query: 761 LAMTLSGTTLTQYRERDKLIAVDLRAPRAQRVDPASLAGLAMPTPNG-PVPLGSLGRFHD 819 ++ L GT + + +R ++ + ++A R+ P + L + + NG VP + H Sbjct: 749 ISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHW 808 Query: 820 TLEYGVVWERDRQPTITVQSDVTAGAQGIDVTHAIDAKLDALRAQLPVGYRIEIGGSVEE 879 + + P++ +Q + G + A ++ L ++LP G + G + Sbjct: 809 VYGSPRLERYNGLPSMEIQGEAAPG----TSSGDAMALMENLASKLPAGIGYDWTGMSYQ 864 Query: 880 STKGQTSINAQMPLMVIAVLTLLMIQLQSFSRVLMVVLTAPLGMIGVVGTLLLFGKPFGF 939 A + + + V L +S+S + V+L PLG++GV+ LF + Sbjct: 865 ERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDV 924 Query: 940 VAMLGVIAMFGIIMRNSVILVDQIEQDIAA-GHGRFDAIVGATVRRFRPITLTAAAAVLA 998 M+G++ G+ +N++++V+ + + G G +A + A R RPI +T+ A +L Sbjct: 925 YFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILG 984 Query: 999 LIPLLRSNFFG-----PMATALMGGITSATVLTLFFLPALYA 1035 ++PL SN G + +MGG+ SAT+L +FF+P + Sbjct: 985 VLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFV 1026 Score = 83.7 bits (207), Expect = 2e-18 Identities = 91/535 (17%), Positives = 182/535 (34%), Gaps = 67/535 (12%) Query: 550 IERRFIVLAITIALFVVALAGFSLVPQQFFPSSDRPELLVDLRLPEGASFNATLKEAER- 608 I R + I L + +P +P+ P + V P A + + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-----GADAQTVQDT 60 Query: 609 ----LEKLIAKRPEIDH---AVNFVGSG--APRFYLPLDQQLQLPNFAQFVITAKSVDAR 659 +E+ + + + + GS F D P+ AQ V + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTD-----PDIAQ-------VQVQ 108 Query: 660 EKLSAWLAPVLREQFP-AARTRISRLENGPPVGYPVQFRVSGDSIATVRAIAEKVAATMR 718 KL P + + +E V VS + T I++ VA+ ++ Sbjct: 109 NKLQL-----ATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVK 163 Query: 719 ADAR----ATNVQFDWDEPAERSVRFELDQHKARELNVSSQDVASFL--------AMTLS 766 +VQ A+ ++R LD + ++ DV + L A L Sbjct: 164 DTLSRLNGVGDVQLF---GAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLG 220 Query: 767 GTTLTQYRERDKLIAVDLRAPRAQRVDPASLAGLAMPTPNG-PVPLGSLGRFHDTLE-YG 824 GT ++ + I R + +L +G V L + R E Y Sbjct: 221 GTPALPGQQLNASIIAQTRFKNPEEFGKVTLRV----NSDGSVVRLKDVARVELGGENYN 276 Query: 825 VVWERDRQPTITVQSDVTAGAQGIDVTHAIDAKLDALRAQLPVGYRIEI----GGSVEES 880 V+ + +P + + GA +D AI AKL L+ P G ++ V+ S Sbjct: 277 VIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLS 336 Query: 881 TKGQTSINAQMPLMVIAVLTLLMIQLQSFSRVLMVVLTAPLGMIGVVGTLLLFGKPFGFV 940 + +++ L + + LQ+ L+ + P+ ++G L FG + Sbjct: 337 I--HEVVKTLFEAIMLVFLVMYLF-LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTL 393 Query: 941 AMLGVIAMFGIIMRNSVILVDQIEQDIAAGHGRF-DAIVGATVRRFRPITLTAAAAVLAL 999 M G++ G+++ +++++V+ +E+ + +A + + + A Sbjct: 394 TMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVF 453 Query: 1000 IPLL-----RSNFFGPMATALMGGITSATVLTLFFLPALYAAWFRVKPDERDPEP 1049 IP+ + + ++ + + ++ L PAL A + E Sbjct: 454 IPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENK 508
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.0 bits (70), Expect = 0.011 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 17/79 (21%) Query: 104 LLQSLAQIASERPALYISGEESGAQIALRAQRLALLEGGASAADLKLLAEIQLEKIQATI 163 LL +L +I+ P L + + +I L L ++Q+E A + Sbjct: 361 LLDALLEISDSDPLLRYYVDSATHEIILS-----------------FLGKVQMEVTCALL 403 Query: 164 DAERPDVAVIDSIQTIYSE 182 + I IY E Sbjct: 404 QEKYHVEIEIKEPTVIYME 422
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 438 bits (1127), Expect = e-156 Identities = 207/353 (58%), Positives = 270/353 (76%) Query: 1 MPRPISATIHTAALANNLSVVRRHAAQSKVWAIVKANAYGHGLARVFPGLRGTDGFGLLD 60 M RPI A++ AL NLS+VR+ A ++VW++VKANAYGHG+ R++ + TDGF LL+ Sbjct: 1 MTRPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLN 60 Query: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRMLETARLSKPVNV 120 L+EA+ LRE GW GPIL+LEGFF + D+++ D++ LTT VH++ Q++ L+ ARL P+++ Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDI 120 Query: 121 QLKMNSGMNRLGYTPEKYRAAWERARACPGIGQITLMTHFSDADGERGVAEQMATFERGA 180 LK+NSGMNRLG+ P++ W++ RA +G++TLM+HF++A+ G++ MA E+ A Sbjct: 121 YLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQAA 180 Query: 181 QGIAGARSFANSAAVLWHPSAHFDWVRPGIMLYGASPSGRAADIADRGLKPTMTLASELI 240 +G+ RS +NSAA LWHP AHFDWVRPGI+LYGASPSG+ DIA+ GL+P MTL+SE+I Sbjct: 181 EGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSSEII 240 Query: 241 AVQTLAKGQAVGYGSMFVAEDTMRIGVVACGYADGYPRIAPEGTPVVVDGVRTRIVGRVS 300 VQTL G+ VGYG + A D RIG+VA GYADGYPR AP GTPV+VDGVRT VG VS Sbjct: 241 GVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTVS 300 Query: 301 MDMLTVDLTPVPQAGVGARVELWGETLPIDDVAARCMTVGYELMCAVAPRVPV 353 MDML VDLTP PQAG+G VELWG+ + IDDVAA TVGYELMCA+A RVPV Sbjct: 301 MDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPV 353
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 28.7 bits (64), Expect = 0.049 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 4/139 (2%) Query: 13 FFSSLADSALLIAAIALLKDLHAPNWMIPLLKLFFVLSYVVLAAFVGAFADSRPKGHVMF 72 FFS L + L ++ + D + P + F+L++ + A G +D ++ Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 73 ITNSIKVVGCLIMLFGAHP----LIAYGIVGFGAAAYSPAKYGILTELLPPERLVAANGW 128 I G +I G ++A I G GAAA+ ++ +P E A G Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 129 IEGTTVGSIILGTVLGGAL 147 I +G +GG + Sbjct: 144 IGSIVAMGEGVGPAIGGMI 162
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 38.6 bits (90), Expect = 2e-06 Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 7/59 (11%) Query: 7 RPRHARYRAVTSFGFGFGFGF------GFGFGFGFGFGFGFGFGFGFGVQYAASRATRA 59 R RY + G + G + GF + G GF VQY + Sbjct: 143 RLISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGFNYKNG-GFFVQYGGAYKRHH 200
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 44.2 bits (104), Expect = 3e-08 Identities = 21/71 (29%), Positives = 32/71 (45%) Query: 79 VAPVAQRSGVGLALLREAVRIARAERLDGVLLEVRPSNPRAIRLYERFGFVSVGRRRNYY 138 VA ++ GVG ALL +A+ A+ G++LE + N A Y + F+ Y Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLY 156 Query: 139 PAKHRSREDAI 149 + E AI Sbjct: 157 SNFPTANEIAI 167
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.3 bits (89), Expect = 5e-05 Identities = 57/271 (21%), Positives = 97/271 (35%), Gaps = 13/271 (4%) Query: 74 AFTLPIALFALLSGVAADAWDRRTVMLLSQALMFSVALCLVALAAAGAMTPARLLVCMFV 133 + L A + G +D + RR V+L+S +V ++A A + L + V Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLLVS-LAGAAVDYAIMATAPFLWV----LYIGRIV 105 Query: 134 GGCAGAMFQPAWQSAVTEQVPARELSAAIALDSFSMNFARTAGPALGGFIVASVSPNAAF 193 G GA + + + E + S F AGP LGG + SP+A F Sbjct: 106 AGITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPF 163 Query: 194 V---LSGLSYAGLIYALSRSIRGAAARPPVRERLATMLVQGVRYCGRARGIRGTLIRSSL 250 L RP R A + R+ + + + Sbjct: 164 FAAAALNGLNFLTGCFLLPESHKGERRP--LRREALNPLASFRWARGMTVVAALMAVFFI 221 Query: 251 FGFLGSPVWALLPLFAKTQFGGEARTYGVLLASFGA-GAASGALGGAAGRARLGREALVR 309 +G AL +F + +F +A T G+ LA+FG + + A+ ARLG + Sbjct: 222 MQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM 281 Query: 310 LCTLTFAAGMLATAWSPCQAVAMLGLAVAGG 340 L + G + A++ +A + + Sbjct: 282 LGMIADGTGYILLAFATRGWMAFPIMVLLAS 312 Score = 35.2 bits (81), Expect = 5e-04 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 8/167 (4%) Query: 21 LAALRGPFAYRTFAAIWVAS-LVGNIGGSIQTVAASWLMTSMAPSPTMVSLVQTAFTLPI 79 LA+ R AA+ ++ +G + + T + + AF + Sbjct: 200 LASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILH 259 Query: 80 ALF-ALLSGVAADAWDRRTVMLLSQALMFSVALCLVALAAAGAMTPARLLVCMFVGGCAG 138 +L A+++G A R ++L M + + LA A A ++ + G Sbjct: 260 SLAQAMITGPVAARLGERRALMLG---MIADGTGYILLAFATRGWMAFPIMVLLASG--- 313 Query: 139 AMFQPAWQSAVTEQVPARELSAAIALDSFSMNFARTAGPALGGFIVA 185 + PA Q+ ++ QV + + GP L I A Sbjct: 314 GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 25.6 bits (55), Expect = 0.024 Identities = 13/45 (28%), Positives = 17/45 (37%) Query: 36 PGDPVGPKAPPARGPGARRTRAAPRAPATPGARPLSAGATTPPRP 80 PG P P P ++ + +P T A PL T P P Sbjct: 180 PGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLP 224
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 2e-06 Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 21/126 (16%) Query: 87 TVRSQVDGQITHVRFREGQQVRAGDVLVEIDRRALQAAADQATAKLEQDKATLANARLEL 146 ++ + + + +EG+ VR GDVL+++ +A + + L Q + ++ Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 147 ----------------ARHQRLAEMNAAPVQML-----DTWKARVNELHAQIRGDQAAVQ 185 Q ++E + L TW+ + + + +A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 186 NARVAV 191 + Sbjct: 218 TVLARI 223
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 755 bits (1951), Expect = 0.0 Identities = 273/1033 (26%), Positives = 495/1033 (47%), Gaps = 26/1033 (2%) Query: 9 FIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQVSAVLPGADPVSVASTLAQP 68 FIR P+ ++ ++ AG A LPVA P + P + VSA PGAD +V T+ Q Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 69 LETQFSKIPYVTQMTSQSTLS-STSIVLQFSLERSIDAAANDVQSAIDAAAAQLPADLPS 127 +E + I + M+S S + S +I L F D A VQ+ + A LP ++ Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 128 PPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLSQIDGVGSVSIGGQQKP 185 + S +M+ +S T D DYV + + +LS+++GVG V + G Q Sbjct: 125 QGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY- 182 Query: 186 SIRIQLDPVKLASRGLSSEDVRRALSGLSGVNPKGVFNGT------TRSYTIYTNGQLTE 239 ++RI LD L L+ DV L + G GT + +I + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 240 PAQWNDAIV-AYRDGTPVRIRDIGQAVLGPEDNTLAAWIDGRRAISVGIYKKPGANTVST 298 P ++ + DG+ VR++D+ + LG E+ + A I+G+ A +GI GAN + T Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 299 VDKILARLPELEASLPPSLKIAVLADRTQTIRASLLDIELTLLLNVVLVVVVIYAFLGSV 358 I A+L EL+ P +K+ D T ++ S+ ++ TL ++LV +V+Y FL ++ Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 359 RTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENIARH-VE 417 R T+IP + VPV L G A++ GYS++ +++ M +A+G +VDDAIV+VEN+ R +E Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 418 AGERPLQAALKGLSETSFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVTLSMTIIVSA 477 P +A K +S+ + I++ L AV +P+ G G ++R+F++T+ + +S Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 478 FVSLTLTPMMASYLLRAHRHDAGRPPRP--GLFERAFARTAAAYERALDVALRHRFVTLC 535 V+L LTP + + LL+ + G F F + Y ++ L L Sbjct: 483 LVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLL 542 Query: 536 AFFASVAASVFLYVGIPKGFFPQQDTGVITGISEAAQTISVEDMARHSMALAAIIRADPA 595 + VA V L++ +P F P++D GV + + + E + + + Sbjct: 543 IYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEK 602 Query: 596 --VEHCQMAVGGSAYAGTTVNNGRWYITLKPRDQRDA---TADEVIRRLRPQFAKVPGVR 650 VE V G +++G N G +++LKP ++R+ +A+ VI R + + K+ Sbjct: 603 ANVES-VFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 651 MYLQAAQDVIIGARLARTQYQLTLQSA-DVGALTTWAPRLLARLSGLP-QLRDVASDQQV 708 + ++ ++L Q+ ALT +LL + P L V + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 709 NGSALSVAIDRDQAARYGLTPEAIDGTLYDAFGSRQVAQYFTQLSTYKVIMETLPSLQRD 768 + + + +D+++A G++ I+ T+ A G V + + K+ ++ + Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 769 PGTLDRIYMKAPSGALVPLSSVARWTTDTVQPLSVNHQSHFPSVTISFNLAPGVSLGEAT 828 P +D++Y+++ +G +VP S+ + + + PS+ I APG S G+A Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTT-SHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 829 AAIEAARASLRMPPAVVGSFQGTAQAFQSTLATMPMLILSALIVAYLVLGALYGSFIHPW 888 A +E + ++P + + G + + + P L+ + +V +L L ALY S+ P Sbjct: 841 ALME--NLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 889 TILSTLPSAGVGAIATLWLFKYDFNLIALIGVILLIGIVKKNGIMMVDFAIAATRERNMT 948 +++ +P VG + LF ++ ++G++ IG+ KN I++V+FA + Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 949 SLDAIRSACLLRLRPIMMTTMTALFGALPLMLTPGMGSELRQPLGYAMVGGLLVSQVLTL 1008 ++A A +RLRPI+MT++ + G LPL ++ G GS + +G ++GG++ + +L + Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1009 FTTPVIYLYLDTL 1021 F PV ++ + Sbjct: 1019 FFVPVFFVVIRRC 1031 Score = 89.9 bits (223), Expect = 3e-20 Identities = 78/509 (15%), Positives = 164/509 (32%), Gaps = 37/509 (7%) Query: 4 NLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQVSAVLP-GADPVSVA 62 N + L+ A I+ V + LP + LP+ + LP GA Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 63 STLAQPLETQF---SKIPYVTQMTSQSTLSSTS-------IVLQFSLERSIDAAANDVQS 112 L Q + + + S + + L+ ER + N ++ Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEER--NGDENSAEA 645 Query: 113 AIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAIS---------STLPLTTIDDYVETR 163 I A + L + I+ L + + L + Sbjct: 646 VIHRAKME----LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQL 701 Query: 164 LTKSLSQIDGVGSVSIGGQQ-KPSIRIQLDPVKLASRGLSSEDVRRALSGLSGVNPKGVF 222 L + + SV G + ++++D K + G+S D+ + +S G F Sbjct: 702 LGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDF 761 Query: 223 NGTTRSYTIYTNGQ---LTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPEDNTLAAWIDG 279 R +Y P + V +G V + L +G Sbjct: 762 IDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLER-YNG 820 Query: 280 RRAISVGIYKKPGANTVSTVDKILARLPELEASLPPSLKIAVLADRTQTIRASLLDIELT 339 ++ + PG ++ +A + L + LP + + R S Sbjct: 821 LPSMEIQGEAAPG----TSSGDAMALMENLASKLPAGIGYDW-TGMSYQERLSGNQAPAL 875 Query: 340 LLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVG 399 + ++ V+V + + A S + + VP+ + G + D ++ + +G Sbjct: 876 VAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIG 935 Query: 400 FVVDDAIVMVENI-ARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLLPLLLMSGII 458 +AI++VE + G+ ++A L + I SL+ + +LPL + +G Sbjct: 936 LSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAG 995 Query: 459 GRMFREFAVTLSMTIIVSAFVSLTLTPMM 487 + + ++ + +++ P+ Sbjct: 996 SGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.026 Identities = 34/191 (17%), Positives = 52/191 (27%), Gaps = 22/191 (11%) Query: 335 SDRLSLFADVGYTRNFHG--AAGGMNAFDSDVEMFSIGADYKLSEASRAGALLSSGNANG 392 S+ + L Y RN + A N + + Y G L G Sbjct: 1331 SNNVQLGGVFTYVRNSNNFDKATSKNTL----AQVNFYSKYYADNHWYLGIDLGYGKFQS 1386 Query: 393 SLAGGQGR-IGLHAYRLGVY--HAFERAGLFVRAYAGAGWSR-----YRL--DRAAVLPG 442 L H + G+ AF + G +S + L R V P Sbjct: 1387 KLQTNHNAKFARHTAQFGLTAGKAFNLGNFGITPIVGVRYSYLSNADFALDQARIKVNPI 1446 Query: 443 AVRASTSGFDFGALVKAGYLFALGGVRLGPVADVGYTQLVARGYTEDGDPILAQNVGVQR 502 +V+ + + D Y + LG + P+ Y G A NV Q+ Sbjct: 1447 SVKTAFAQVDLS------YTYHLGEFSVTPILSARYDANQGSGKINVNGYDFAYNVENQQ 1500 Query: 503 LKGVSAGAGVR 513 Sbjct: 1501 QYNAGLKLKYH 1511
>SSBTLNINHBTR#Streptomyces subtilisin inhibitor signature. Length = 144 Score = 28.3 bits (62), Expect = 0.026 Identities = 15/50 (30%), Positives = 23/50 (46%) Query: 29 VATAAVAPADAFAATAKTAQSAKGKKSAAKKSLRAASSSAEPRAKGARKR 78 +A+ A APA +A +A G+ +A LRA + + P A G Sbjct: 27 LASPATAPASLYAPSALVLTVGHGESAATAAPLRAVTLTCAPTASGTHPA 76
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.6 bits (82), Expect = 5e-04 Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 49 VPSPSAGTVKEVKVKVGDAVSQGSLIVLLDGAQAAAQPAQANGAATSAAQPAAAPAAA 106 + VKE+ VK G++V +G +++ L A A + + A Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQIL 156 Score = 31.0 bits (70), Expect = 0.012 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 5/91 (5%) Query: 162 VPSPAAGVVKDIKVKVGDAVSEGSLIVVLEASGGAAA--SAPQAAAPAPAPAAPAPAPAP 219 + +VK+I VK G++V +G +++ L A G A + A + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 220 QAAPAAAPA---PAQAPAPAASGEYRASHAS 247 P P + S E S Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTS 189
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.012 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 18/85 (21%) Query: 744 PVLIEQVLV-NLMKNAAEAMQEARPQAENGVIRVVADLEAGFVDIRVIDQGPGVDEATAE 802 P ++ Q LV N +K+ + G I + + G V + V + G + T E Sbjct: 256 PPMLVQTLVENGIKHGIA------QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE 309 Query: 803 RLFEPFYSTKSDGMGMGLNICRSII 827 S G G+ N+ + Sbjct: 310 ----------STGTGL-QNVRERLQ 323
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 113 bits (283), Expect = 2e-31 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 4/153 (2%) Query: 11 TVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQIACLILDVRMSGM 70 T+ V DDD A+R L L GY V+ S+A AG ++ DV M Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA----AGDGDLVVTDVVMPDE 60 Query: 71 SGLELQERLIAENAALPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAELRKLVERMLE 130 + +L R+ LP++ ++ A+ +KGA D++ KPFD EL ++ R L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 131 KARNESKSVQEQRAASERLSKLTAREQQVLERI 163 + + +++ L +A Q++ + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL 153
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 32.3 bits (73), Expect = 0.002 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 36 SARPAGELTMIAGLSPSAASAHLARLTDGGLLAL---DVRGRHRYYRIATPDIAAAIEAL 92 R A + + ++P A A + G +A + R + P+ A +EA+ Sbjct: 254 GTRYAIDKAAMRNIAPLPAEGKFAVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAV 313 Query: 93 ANVAQAA 99 NVA AA Sbjct: 314 FNVAAAA 320
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.1 bits (101), Expect = 5e-06 Identities = 42/263 (15%), Positives = 63/263 (23%), Gaps = 12/263 (4%) Query: 582 NPAARAGERPQPNMPQPNAAQPNAAQPNIARPGQPQPGVAQPTAPHAPGTPPNAMRPDAA 641 NP + + N PN Q P P AP PP P Sbjct: 982 NPEVEKRNQT---VDTTNITTPNNIQ--ADVPSVPSNNEEIARVDEAPVPPPAPATPSET 1036 Query: 642 RPNEARPAPAPSARNGVPRPPAAVENPGMRDEARAPGEAPRPQPSWTQPHPPIQQQRANE 701 A + S A R+ A+ EA + TQ + Q + Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREVAK---EAKSNVKANTQTNEVAQSGSETK 1093 Query: 702 GGPRASGEPNAPLNYRSPTQNALPPIRSTPTPTHSAPPAPPPAERAQPQPQPGPAPRNAM 761 + A + + + P T P +E QPQ +P + Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 762 RAPEAPRQEVAPPAPRNEYRAPAPAPRPQIE--APRMEAPRMP-APRAEAP-RMEPRPAP 817 E Q + + + + P P +P Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS 1213 Query: 818 PPPAVPHNPPPAPRQEPPHQARP 840 P N + PH P Sbjct: 1214 ESSNKPKNRHRRSVRSVPHNVEP 1236
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 376 bits (968), Expect = e-129 Identities = 133/388 (34%), Positives = 202/388 (52%), Gaps = 40/388 (10%) Query: 101 FDYVTVPYECDRIVESVGHAYGMVTLSEGLAPAAATVRNEGEMVGTCEAMLALFKMIRKV 160 +DY+ P++ ++ +G A + + ++ +VG AM +++++ ++ Sbjct: 99 YDYLPKPFDLTELIGIIGRA--LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARL 156 Query: 161 ASTDAPVFISGESGTGKELTAVAIHERSSRAGAPFVAINCGAIPPTLLQAELFGYERGAF 220 TD + I+GESGTGKEL A A+H+ R PFVAIN AIP L+++ELFG+E+GAF Sbjct: 157 MQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAF 216 Query: 221 TGANQRKIGRIEAANGGTLFLDEIGDLPFESQASLLRFLQEHKVERVGGHQSIPVDVRII 280 TGA R GR E A GGTLFLDEIGD+P ++Q LLR LQ+ + VGG I DVRI+ Sbjct: 217 TGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIV 276 Query: 281 SATHVDMQIALRNGRFREDLYHRLCVLKLEEPPLRERGKDIEILARHMLERFKGDAHRRL 340 +AT+ D++ ++ G FREDLY+RL V+ L PPLR+R +DI L RH +++ + + + Sbjct: 277 AATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEG-LDV 335 Query: 341 RGFTPDAIAALHNYAWPGNVRELINRVRRAIVMSEGRMISAADLELSGYAEVA------- 393 + F +A+ + + WPGNVREL N VRR + +I+ +E +E+ Sbjct: 336 KRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKA 395 Query: 394 ------------------------------PMSLEEARESAERHAIEVALLRHRGRLADA 423 + E I AL RG A Sbjct: 396 AARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKA 455 Query: 424 ARELGVSRVTLYRLLCAYGMRDDDGARA 451 A LG++R TL + + G+ +R+ Sbjct: 456 ADLLGLNRNTLRKKIRELGVSVYRSSRS 483
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 357 bits (917), Expect = e-121 Identities = 145/453 (32%), Positives = 216/453 (47%), Gaps = 46/453 (10%) Query: 53 VHVARSANEAARRVKPNQPQAGIADL---DGFAPRELPTLEAVLRQQQVGWIALAGDTRI 109 V + +A R + + D+ D A LP ++ V + ++ Sbjct: 30 VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKARPDLPV--LVMSAQNTF 87 Query: 110 NDPDVRRLIRQYCFDYMQGLPPHETIDYLVGHAYGMVALCDLDVTAGAAATGDEMVGACD 169 + + +DY+ + ++G A + G +VG Sbjct: 88 MTA--IKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR-RPSKLEDDSQDGMPLVGRSA 144 Query: 170 AMQQLFRTIRKVAATDATVFISGESGTGKELTALAIHERSERRKAPFVAINCGAIPNHLL 229 AMQ+++R + ++ TD T+ I+GESGTGKEL A A+H+ +RR PFVAIN AIP L+ Sbjct: 145 AMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLI 204 Query: 230 QSELFGYERGAFTGASQRKVGRVEAADGGTLFLDEIGDMPLESQASMLRFLQEGKIERLG 289 +SELFG+E+GAFTGA R GR E A+GGTLFLDEIGDMP+++Q +LR LQ+G+ +G Sbjct: 205 ESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVG 264 Query: 290 GHESIPVDVRIISATHVDLDAAMREGRFRDDLYHRLCVLKLDEPPLRARGKDIEILAHHI 349 G I DVRI++AT+ DL ++ +G FR+DLY+RL V+ L PPLR R +DI L H Sbjct: 265 GRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHF 324 Query: 350 LHQFRSDGARRIHGFTSCAIEAMYNYHWPGNVRELINRIRRAIVMSDSRQLSAADLDL-- 407 + Q +G + F A+E M + WPGNVREL N +RR + ++ ++ Sbjct: 325 VQQAEKEG-LDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENEL 383 Query: 408 -----------------------------------APFAARQATTLAEARERAERRTIEA 432 A + E I A Sbjct: 384 RSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILA 443 Query: 433 SLLRHRNRLTEAAAELGVSRATLYRLMVSHGLR 465 +L R +AA LG++R TL + + G+ Sbjct: 444 ALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 167 bits (425), Expect = 3e-51 Identities = 83/363 (22%), Positives = 136/363 (37%), Gaps = 58/363 (15%) Query: 13 KILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHEKAE----LVVAD 68 K LVTG AGFIG +S+RL + V +DNL+ + +++ L A+ D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDY-YDVSLKQARLELLAQPGFQFHKID 60 Query: 69 VTDAGAWDALLSDFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDALVKHGIVV 128 + D L + E + SL +A N+ G + + + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK--I 118 Query: 129 EHILLTSSRAVYGEGAWQKDDGTIVYPGQRGRAQLEAAQWDFPGMTMLPSRADRTEPRPT 188 +H+L SS +VYG +P D + P Sbjct: 119 QHLLYASSSSVYGLN------------------------------RKMPFSTDDSVDHPV 148 Query: 189 SVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFSRLAREKKV 248 S+Y ATK A E + +S P + LR VYGP + F++ E K Sbjct: 149 SLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALF----KFTKAMLEGKS 204 Query: 249 IPLYEDGNVTRDFVSIDDVADAIVATLVRTPEA-----------------LSLFDIGSGQ 291 I +Y G + RDF IDD+A+AI+ P A +++IG+ Sbjct: 205 IDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSS 264 Query: 292 ATSILDMARIIAAHYGAPEPQINGAFRDGDVRHAACDLSESLANLGWKPQWSLKRGIGEL 351 ++D + + G + + GDV + D +G+ P+ ++K G+ Sbjct: 265 PVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNF 324 Query: 352 QTW 354 W Sbjct: 325 VNW 327
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 30.3 bits (68), Expect = 0.007 Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 195 LFTMVLMFLSPVFYPASALPEKYRFWLELNPLTLFIEQSRGILLEGRVPDFHPLGLAFL 253 L ++FLS +P LP ++ PL+ I+ R I+L V D A Sbjct: 184 LVITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALC 242
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 57.9 bits (140), Expect = 8e-12 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 27/160 (16%) Query: 1 MKILVTGANGQVGWELARSLAVLGQVV-----------PLTRE--------------QAD 35 MK LVTGA G +G+ +++ L G V ++ + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 36 LGRPETLARIVEDAKPDVVVNAAAYTAVDAAETDGAAANVINGEA-VGVLAAATKRVGGL 94 L E + + + V + AV + + A N + +L Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 95 FVHYSTDYVFDGTKPSPYIETDPT-CPVNAYGASKLLGEL 133 ++ S+ V+ + P+ D PV+ Y A+K EL Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANEL 160
>SECA#SecA protein signature. Length = 901 Score = 33.7 bits (77), Expect = 0.001 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 116 LNRRLPRAVARTREGDFSLNGLLGFDLFGKTVGVIGTGLI--GSVFARIMTGFGMRVLAH 173 L +P A A RE + G+ FD V ++G G++ A + TG G + L Sbjct: 60 LENLIPEAFAVVREASKRVFGMRHFD-----VQLLG-GMVLNERCIAEMRTGEG-KTLTA 112 Query: 174 SLPPHDDALIALGVRYVPLDALLAEAD 200 +LP + +AL GV V ++ LA+ D Sbjct: 113 TLPAYLNALTGKGVHVVTVNDYLAQRD 139
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 49.8 bits (119), Expect = 1e-08 Identities = 95/399 (23%), Positives = 149/399 (37%), Gaps = 37/399 (9%) Query: 5 LFALAVAAFGIGTTEFVIMGLLPNVARDLGVSIPAA---GMLVSGYALGVTIGAPILAVV 61 L +A+ A GIG +IM +LP + RDL S G+L++ YAL AP+L + Sbjct: 11 LSTVALDAVGIG----LIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 62 TAKMPRKAALLALIGVFIVGNLFCAIAPGYATLMVARVVTAFCHGAFFGIGSVVASNLVA 121 + + R+ LL + V A AP L + R+V G+ +A ++ Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA-DITD 125 Query: 122 PNKRAQAIALMFTGLTLANVLGVPLGTALGQAFGWRATFWAVTGIGALAAAALAFCVPKR 181 ++RA+ M V G LG +G F A F+A + L F +P+ Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 182 LEMPAAGIAREFGVLRNPQVLMVLGISVLASASLFTVFTYIAPI-----------LEDVT 230 + + RE NP + A+L VF + + ED Sbjct: 185 HKGERRPLRRE---ALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 231 GFTPHDVTLVLLLFG-LGLTVGGTVGGKLADW---RRMPSLVATLASIGVVLAAFAGTMR 286 + + + L FG L + G +A RR L G +L AFA Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 287 TPLPALVTIFVWGVLAFAIVPPLQILIVDRAS-HAPNLASTLNQGAFNLGNALGAWLGGT 345 P +V + G+ +P LQ ++ + +L + +G L Sbjct: 302 MAFPIMVLLASGGI----GMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357 Query: 346 AIHAGVPLAK-LPW-AGAAL---AMAALALTLWSASLER 379 A + W AGAAL + AL LWS + +R Sbjct: 358 IYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQR 396
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.7 bits (111), Expect = 9e-08 Identities = 95/395 (24%), Positives = 152/395 (38%), Gaps = 25/395 (6%) Query: 12 LILSVAVVGLGTGATLPLTALALTEAGHGTRIV---GILTAAQAGGGLAVVPFVTAITKR 68 ++ +VA+ +G G +P+ L + H + GIL A A A P + A++ R Sbjct: 10 ILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDR 69 Query: 69 LGARQVIVASVVVLAAATALMQFTSNLVVWGVLRVVCGAALMLLFTIGEAWVNQLADDAT 128 G R V++ S+ A A+M L V + R+V G G A++ + D Sbjct: 70 FGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIADITDGDE 128 Query: 129 RGRVVAIYATNFTLFQMAGPVLVSQIAGMTH-----VRFALSGTLFLLAL----PSLASI 179 R R + F +AGPVL + G + AL+G FL S Sbjct: 129 RARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGE 188 Query: 180 RKTPIADEPHHDAHDRWTRVIPKMPALVVGTAFFALFDTLALSLLPIFAMAR--GVASEA 237 R+ + + A RW R + + AL+ L + +L IF R A+ Sbjct: 189 RRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTI 248 Query: 238 AVLFAAILLFGDTAMQFPIGWLADKLGRERVHLGAGCVVLALLPLLPAVVTTPWLCWPLL 297 + AA + A G +A +LG ER L G + +L A T W+ +P++ Sbjct: 249 GISLAAFGILHSLAQAMITGPVAARLG-ERRALMLGMIADGTGYILLAFATRGWMAFPIM 307 Query: 298 FVLGAAAGSVYTL----SLVACGERFRGSALVTASSLVSASWSAASFGGPLVAGALMEQF 353 +L + + L S ER +G + ++L S S GPL+ A+ Sbjct: 308 VLLASGGIGMPALQAMLSRQVDEER-QGQLQGSLAALT----SLTSIVGPLLFTAIYAAS 362 Query: 354 GGDALIGVLIVSAIAFVGAALWERRALPMQAARRG 388 I A ++ RR L A +R Sbjct: 363 ITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRA 397
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 43.7 bits (103), Expect = 9e-07 Identities = 77/398 (19%), Positives = 124/398 (31%), Gaps = 59/398 (14%) Query: 50 VAPSVIAEWGVKKQA---LGPVFSASLFGMLLGALGLSVLADRIGRRPVLIGATLFFALA 106 V P ++ + G + + A L L+DR GRRPVL+ + A+ Sbjct: 27 VLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVD 86 Query: 107 MLATPFATSIPILIALRFVTGLGLGCIMPNAMALVGECSPSAHRVKRM----MIVSCGFT 162 A + +L R V G+ G A A + + + R + G Sbjct: 87 YAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMV 145 Query: 163 LGAALGGFVSAALIPAFGWRAVFFVGGAVPLALAAAMAASLPESPQLLVLRGRHDAARAW 222 G LGG + F A FF A+ LPES H R Sbjct: 146 AGPVLGGLMGG-----FSPHAPFFAAAALNGLNFLTGCFLLPES---------HKGERRP 191 Query: 223 LAKFAPRLAVPPDTRLVVREAGPRGAPVAELFRSGRARVTLLLWAINF-MNLIDLYFLSN 281 L + A P+A + V L A+ F M L+ + Sbjct: 192 LRREALN-------------------PLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL 232 Query: 282 WLPTVMRDAGYASGTAVIVGTVLQTGGVIGTLS----LGWFIERHGFARVLFACFACATI 337 W+ + A +G L G++ +L+ G R G R L Sbjct: 233 WVIFGEDRFHW---DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 338 AIGLIGSVAHAFVWLLAAVFVGGFCVVGGQPAVNALAGHYYPTSLRSTGIGWSLGVGRVG 397 L+ ++ V + + G PA+ A+ + G + + Sbjct: 290 GYILLAFATRGWMAFPIMVLLASGGI--GMPALQAMLSRQVDEERQGQLQGSLAALTSLT 347 Query: 398 SVLGPLVGGQLIA--------LGWSNDALFHAAAVPVL 427 S++GPL+ + A W A + +P L Sbjct: 348 SIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPAL 385
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 27.8 bits (61), Expect = 0.017 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 5/87 (5%) Query: 17 EAEAEAEAEAEAEAEAEAEAEAEAEAEAEADTDTDTDRKFDTERSAANDVSARAAAPPVP 76 + A+A EA A +A +A AEA + + R A +A A P Sbjct: 201 QIRMNTLTAAKASIEAAAANKAREQAAAEA-----KRKAEEQARQQAAIRAANTYAMPAN 255 Query: 77 STAGVVIAVHPLDPAAAAALAIAATVA 103 + A L A A ++A ++ Sbjct: 256 GSVVATAAGRGLIQVAQGAASLAQAIS 282
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 36.0 bits (83), Expect = 3e-05 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Query: 3 RRADRLFQIAELLRGRRLTTAQQLADWL-----SVSPRTVYRDVRDLQLSGVPIEGEAGI 57 + R +I E++ + T +L D L +V+ TV RD+++L L VP + Sbjct: 2 NKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSYK 61 Query: 58 GYRLNRAASLPPLTF 72 Y L PL+ Sbjct: 62 -YSLPADQRFNPLSK 75
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.019 Identities = 44/244 (18%), Positives = 74/244 (30%), Gaps = 45/244 (18%) Query: 33 GNLFGMVGMAIAILTTVALIAKQAAWLGANLPLGLALVFGALVIGGAVGAVIAARVEMTK 92 G + G IA +T A+ ++ A G+ V+GG +G Sbjct: 110 GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVA---GPVLGGLMGGFSPH------ 160 Query: 93 MPELVAAMHSLIGLAAVCIAIAVVAEPEAFGL---VPQDASAPNFIPYGNRIELFIGTFV 149 P AA + + C + + E L ++ + + + F Sbjct: 161 APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFF 220 Query: 150 GAITFSGSVIAFGKLSGKYRFR------------------LFQ----GAPVVYPGQ-HLI 186 A + G+ RF L Q G G+ + Sbjct: 221 IMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRAL 280 Query: 187 NLMLALAMLGFGILFFITQSWLPFGIMTAIAFALGVLIIIPIGGADMPVVVSMLNSYSGW 246 L + G+ +L F T+ W+ F IM +A GG MP + +ML+ Sbjct: 281 MLGMIADGTGYILLAFATRGWMAFPIMVLLAS----------GGIGMPALQAMLSRQVDE 330 Query: 247 AAAG 250 G Sbjct: 331 ERQG 334
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.018 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%) Query: 139 KAVLVAAALYPRFFPMLMTAAGTVKAARVLVL--GAGVAGLQAIATA 183 +A L+A + R P+LMT+ + L + GAG A+ Sbjct: 961 EATLMAVRM--RLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIG 1005
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 73.8 bits (181), Expect = 1e-17 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 6/243 (2%) Query: 7 LFYKEILRFWKVSFQTVLAPVVTALLYLTIFGHALTGRVNVYPGVEYVSFLVPGLVMMSV 66 ++ + + + K + ++L + L+YL G L V GV Y +FL G+V S Sbjct: 19 VWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAAGMVATSA 78 Query: 67 LQNA-FANSSSSLIQSKITGNLVFMLLPPLSSADIFGAYVLASVVRGLAVGAGVFVVTVW 125 + A F ++ + + ML L DI + + + GAG+ VV Sbjct: 79 MTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAA 138 Query: 126 FIPMSFAAPLYIVAFALFGSAILGTLGLIAGIWAEKFDQLAAFQNFLIMPLTFLSGVFYS 185 + + LY + +LG++ A +D +Q +I P+ FLSG + Sbjct: 139 LGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFP 198 Query: 186 THSLPPVWREVSRLNPFFYMIDGFRYGFFG--IADVNPLASLS---VVAGFFVLLALIAM 240 LP V++ +R P + ID R G + DV +V FF+ AL+ Sbjct: 199 VDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRR 258 Query: 241 RLL 243 RLL Sbjct: 259 RLL 261
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.037 Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 34 LLGPNGAGKTTLISILAGL 52 L G G GK+TLI+ L GL Sbjct: 601 LEGTGGIGKSTLINTLVGL 619
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 28.2 bits (63), Expect = 0.026 Identities = 12/73 (16%), Positives = 22/73 (30%) Query: 74 RTTQLAMGRNWRTATPAQQQQVIEQFKQLLIRTYSGALAQLKPDQQIQYPPFRADADATD 133 R + A ++ +Q +T + L+ L P + T+ Sbjct: 107 NLGSALQSRPFEFVRRADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTN 166 Query: 134 VVVRTVAMNNGQP 146 V R M+ P Sbjct: 167 VARRIALMDRTSP 179
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 223 bits (569), Expect = 3e-74 Identities = 85/220 (38%), Positives = 114/220 (51%), Gaps = 8/220 (3%) Query: 15 AAAALSGCATVQTPTKG--DPFEGFNRTMYTFNDKV-DQYALKPVARGYQWAVPQPMRDS 71 L GCA+ T +G DP EGFNRTMY FN V D Y ++PVA ++ VPQP R+ Sbjct: 11 GTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWRDYVPQPARNG 70 Query: 72 VTNFFSNIGDVYIAANNLVQLKIADGVGDIMRVVINTVFGVGGLFDVATLAKLPKHAND- 130 ++NF N+ + + N +Q G+ R +NT+ G+GG DVA +A + Sbjct: 71 LSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGMANPKLQRTEP 130 Query: 131 --FGVTLGHYGVPSGPYLVLPLLGPSTVRDTAGLAVDYAGNPLTYVRPDGVSWGLFGLNL 188 FG TLGHYGV GPY+ LP G T+RD G D A P+ +S G + L Sbjct: 131 HRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMAD-ALYPVLSWLTWPMSVGKWTLEG 189 Query: 189 VNTRANLLGAGDVLEAAAIDKYSFVRNAYLQRRQALIGGA 228 + TRA LL + +L + D Y VR AY QR + G Sbjct: 190 IETRAQLLDSDGLLR-QSSDPYIMVREAYFQRHDFIANGG 228
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 358 bits (921), Expect = e-124 Identities = 108/344 (31%), Positives = 181/344 (52%), Gaps = 2/344 (0%) Query: 12 DRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLHAAFSF 71 ++TE TPK+ AR++GQVA+S+E+ S AL+ A LS EH ++ Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLM--LIPA 61 Query: 72 DRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTFELKFER 131 +++ + + + LE Y P+L + + A+A+ + G+L+S + + ++ Sbjct: 62 EQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKK 121 Query: 132 LNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHAALADAL 191 +NPI G RIFSI+ ++ SI K +++ + I I + LL L T + Sbjct: 122 INPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLG 181 Query: 192 HLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVKGRIRQQ 251 ++ + G +V++ D ++ +QY K+L+M+K+E+KRE++E EG P +K + RQ Sbjct: 182 QILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQF 241 Query: 252 QRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARIRELAAE 311 + + R M NV + VVV NPTH A+ + Y GE P V K + +R++A E Sbjct: 242 HQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEE 301 Query: 312 HHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355 VP+L+ PLARALY + ++ IP A AEVL W+ + Sbjct: 302 EGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>cloacin#Cloacin signature. Length = 551 Score = 32.0 bits (72), Expect = 0.004 Identities = 14/43 (32%), Positives = 20/43 (46%) Query: 28 GGGGDGGSNASVNTGTGGGDTSAGGGSNGGTGGTGGSGSTPLA 70 GGG G + +G G G + G GTGG + + P+A Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 30.1 bits (67), Expect = 0.022 Identities = 17/56 (30%), Positives = 22/56 (39%) Query: 17 AAATAALVAACGGGGDGGSNASVNTGTGGGDTSAGGGSNGGTGGTGGSGSTPLASN 72 A +T+ + G G AS +G + GGGS G GGSG N Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68 Score = 29.7 bits (66), Expect = 0.025 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 28 GGGGDGGSNASVNTGTGGGDTS-------AGGGSNGGTGGTGGSGSTPLASNQAAITVST 80 GG DG +S N GGG S +G G+ GG G +GG T + A V+ Sbjct: 31 GGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAF 90 Query: 81 G 81 G Sbjct: 91 G 91
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.4 bits (214), Expect = 5e-23 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 4/110 (3%) Query: 1 MDKSMKILVVDDFPTMRRIVRNLLKELGYSNVDEAEDGLAGLARLRGGGYDFVISDWNMP 60 M + ILV DD +R ++ L GY V + + G D V++D MP Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 NLDGLAMLKEIRADASLTHLPVLMVTAESKKENIIAAAQAGASGYVVKPF 110 + + +L I+ LPVL+++A++ I A++ GA Y+ KPF Sbjct: 59 DENAFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 4e-14 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 13/143 (9%) Query: 7 KIKVLCVDDSALIRSLMTEIINSQPDMEVCATAPDPLVARELIKQHNPDVLTLDVEMPRM 66 +L DD A IR+++ + ++ + I + D++ DV MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 67 DGLDFLEKLMRLRP-MPVVMVSSLTERGSEITLRALELGAVDFVTKPRVGIRDGMLDYSE 125 + D L ++ + RP +PV+++S+ ++A E GA D++ KP D +E Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNT--FMTAIKASEKGAYDYLPKP--------FDLTE 110 Query: 126 KLADKVRAASRARVRQNPQPHAA 148 + RA + + R + + Sbjct: 111 LIGIIGRALAEPKRRPSKLEDDS 133
>PF06580#Sensor histidine kinase Length = 349 Score = 46.4 bits (110), Expect = 3e-07 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 52/151 (34%) Query: 467 ELDKSLIERIIDPLT--HLVRNSLDHGIETVEARRAAGKDAVGQLVLSAAHHGGNIVIEV 524 +++ ++++ + P+ LV N + HGI G+++L G + +EV Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEV 296 Query: 525 SDDGAGLNRERILAKAAKQGMQISENISDDEVWNLIFAPGFSTAEVVTDVSGRGVGMDVV 584 + G+ + G G+ V Sbjct: 297 ENTGSLALKNTK--------------------------------------ESTGTGLQNV 318 Query: 585 KRNIQSMGG---HVEISSQAGRGTTTRIVLP 612 + +Q + G +++S + G +++P Sbjct: 319 RERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 9e-18 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 2/114 (1%) Query: 4 TILAIDDSATMRTLLSATLGEAGYDVTVASDGEVGLDVALATRFDLVLTDHHMPRKNGLE 63 TIL DD A +RT+L+ L AGYDV + S+ A DLV+TD MP +N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LIVALRRQLGYEATPILVLTTENGDAFKDAARVAGATGWIEKPIDPDALIELVA 117 L+ +++ P+LV++ +N A GA ++ KP D LI ++ Sbjct: 65 LLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 39.5 bits (92), Expect = 1e-05 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 182 FAMSSDAVEPYMRDILREIGKTLNDV---PNRIIVQGHTDAVPYAGGEKGYSNWELSADR 238 F + ++P + L ++ L+++ ++V G+TD + G Y N LS R Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI----GSDAY-NQGLSERR 277 Query: 239 ANASRRELIAGGMDEAKVLRV-LGLASTQNLNKADPLDPENRRISIIVLNRKSELAL 294 A + LI+ G+ K+ +G ++ N D + I + +R+ E+ + Sbjct: 278 AQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 403 bits (1038), Expect = e-133 Identities = 215/691 (31%), Positives = 324/691 (46%), Gaps = 88/691 (12%) Query: 13 TALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPV 72 T L+ A ++ AA + + +F DI + + KT+I+DP V+G + + + + Sbjct: 13 TLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDML 72 Query: 73 PEDQALKTLQSALRMQGFALV-QDHGVLKVVPEADAKLQGVPTYIGNAPQARGDQVVTQV 131 E+Q + S L + GFA++ ++GVLKVV DAK VP AP GD+VVT+V Sbjct: 73 NEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGI-GDEVVTRV 131 Query: 132 FELRNESANNLLPVLRPLI--SPNNTITAYPANNTIVVTDYADNVRRIAQIIAGVDSAAG 189 L N +A +L P+LR L + ++ Y +N +++T A ++R+ I+ VD+A Sbjct: 132 VPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGD 191 Query: 190 SQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLLRASNAQRLA 249 V VPL A+A D+ +T+L + ++ V AD RTNA+L+ R Sbjct: 192 RSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSR-Q 250 Query: 250 AAKKIAQQLDAPSGVPGNMHVVPLRNAEAVKLAKTLRGMLGKGGGESGSSASSNDANAFN 309 + +QLD GN V+ L+ A+A L + L G+ Sbjct: 251 RIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGIS-------------------- 290 Query: 310 QGGSQSGSNFSTGASGTPPLPSGLSSNSSGGAGGTTGGGGLGNAGLLGGDKDKGDDNQPG 369 S + S + Sbjct: 291 ---------------------STMQSEKQAAKPVAALDKNI------------------- 310 Query: 370 GMIQADAASNSLIITASDPVYRNLRAVIDQLDARRAQVYIEALVVELQATTSANLGIQWQ 429 +I+A +N+LI+TA+ V +L VI QLD RR QV +EA++ E+Q NLGIQW Sbjct: 311 -IIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWA 369 Query: 430 VANNALYAGTNLVTGQTGLGNSIVNLTAGAVT--NPGGTLGSLG---SITNGLNIGWLHN 484 N +T T G I AGA G SL S NG+ G Sbjct: 370 NKNAG-------MTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAG---- 418 Query: 485 MFGVQGLGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTA 544 F LL + S+ ++L+TP++VTLDN EA VGQ VP+ TGS + + Sbjct: 419 -FYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGS----QTTSGD 473 Query: 545 NAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQ 604 N FNT +R+ VG+ L VKPQI EG + L++ E S+V +++++ G TF R++ Sbjct: 474 NIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSV-ADAASSTSSDLGATFNTRTVN 532 Query: 605 STVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPV 664 + VL +GE +V+GGL+ + + KVPLLGDIP IG LFRS K K NLM+F+RP Sbjct: 533 NAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPT 592 Query: 665 IINDRETAQAVTSNRYDYIQGVTGAYKSDNN 695 +I DR+ + +S +Y + N Sbjct: 593 VIRDRDEYRQASSGQYTAFNDAQSKQRGKEN 623
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 382 bits (982), Expect = e-133 Identities = 174/406 (42%), Positives = 266/406 (65%), Gaps = 2/406 (0%) Query: 1 MPAFRFEAIDASGRAQKGVIEADSARNARGQLRTQGLTPLVVEPAASAQRGARSQRLALG 60 M + ++A+DA G+ +G EADSAR AR LR +GL PL V+ Q+ + S L+L Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 R--KLSQREQAILTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVLGGHSL 118 R +LS + A+LTRQLA+L+ A +PL+EAL + +Q+E+ ++ +LMAA+R++V+ GHSL Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 119 ANALTQHPRDFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKILLAFTYPAIVT 178 A+A+ P F +Y A+VAAGE +G L VL+RLADY E+R ++ +I A YP ++T Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 179 VIAFGIVTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHWWWAILIGIAAVVYL 238 V+A +V+ LLS VVP+VV F KQ LP+ T V+M +SD VR + +L+ + A Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 239 VKATLSRDGPRLAFDRWLLTAPLAGKLVRGYNTVRFASTLGILTAAGVPILRALQAAGET 298 + L ++ R++F R LL PL G++ RG NT R+A TL IL A+ VP+L+A++ +G+ Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 299 LSNRAMRGNIDDAIVRVREGSALSRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAAEG 358 +SN R + A VREG +L +AL FPP++ H+I SGE +G++ +ML+RAA+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 359 ESRELERRTMFLTSLLEPLLILAMGGIVLVIVLAVMLPIIELNNMV 404 + RE + L EPLL+++M +VL IVLA++ PI++LN ++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 188 bits (480), Expect = 6e-65 Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 3/140 (2%) Query: 10 QAARRQRGFTLIEIMVVVAILGILAALIVPKIMSRPDEARRIAAKQDIGTIMQALKLYRL 69 +A +QRGFTL+EIMVV+ I+G+LA+L+VP +M ++A + A DI + AL +Y+L Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61 Query: 70 DNGRYPTQDQGLNALIQKPTTDPIPNNWKDGGYLERLPNDPWGNSYKYLNPGVHGEIDVF 129 DN YPT +QGL +L++ PT P+ N+ GY++RLP DPWGN Y +NPG HG D+ Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLL 121 Query: 130 SYGADGKEGGESNDSDIGSW 149 S G DG+ G E DI +W Sbjct: 122 SAGPDGEMGTE---DDITNW 138
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 51.9 bits (124), Expect = 1e-10 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 15/101 (14%) Query: 48 RARGFTLLEMLVVLVIAGILVSVASLTLRRNPRTDLREEAQRIALLFETAGDEAQVRARP 107 R RGFTLLEM+++L++ G+ + L + + R + Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQF 61 Query: 108 IAWRATEHGFRF---------------DIRTGDGWRPLRDD 133 ++F D +G W PLR Sbjct: 62 FGVSVHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAG 102
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 30.2 bits (68), Expect = 0.001 Identities = 10/26 (38%), Positives = 18/26 (69%) Query: 8 RSPARSRGFTMIEVLVALAIIAVALA 33 R+ + RGFT++E++V + II V + Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLAS 27
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 33.3 bits (76), Expect = 3e-04 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 33 RGFTLIEMMIAITILAVIA-ILSWRGLDQIIRGREKVAAAMEDERVFAQMFDQMRIDARR 91 RGFTL+E+M+ I I+ V+A ++ + + ++ A+ D D ++D Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQK--AVSDIVALENALDMYKLDNHH 65 Query: 92 AATDDEAGQPAV 103 T ++ + V Sbjct: 66 YPTTNQGLESLV 77
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 276 bits (706), Expect = 2e-93 Identities = 82/324 (25%), Positives = 159/324 (49%), Gaps = 10/324 (3%) Query: 5 EFMSQEEVDALLKGVTGEDDSADEPAEASG---IRPYNIATQERIVRGRMPGLEIINDRF 61 E +SQ+E+D LL ++ D S ++ S I Y+ ++ + +M L ++++ F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 62 ARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPN 121 ARL + +R + V+ V Y EF R++P P+ L ++ + PL+G ++ DP+ Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 122 LVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFVR 181 + F ++D LFGG G+ RD T E ++ ++ + + +W V L+ + Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQ 180 Query: 182 SEMHTQFANVATPNEIVIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEAL-- 239 E + QFA + P+E+V++ + G G ++ C+PY IEPI LSS ++ Sbjct: 181 IETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240 Query: 240 EVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLD---ITDSITAKVD 296 +++ VL ++ + ++++VA++ + + IL LR GD++ L + D + Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300 Query: 297 GVPVMECGYGIFNGQYALRVQRMI 320 C G+ + A ++ I Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERI 324
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 134 bits (338), Expect = 3e-43 Identities = 78/126 (61%), Positives = 97/126 (76%), Gaps = 3/126 (2%) Query: 41 AMDD-WAAALAEQNQQPIETGATGAGVFRPLSKATASSTHNDIDLILDIPVKMTVELGRT 99 A+DD WA AL EQ ++ A VF+ L S DIDLI+DIPVK+TVELGRT Sbjct: 14 ALDDLWADALNEQKATTTKSAADA--VFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRT 71 Query: 100 KIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSER 159 ++ I+ LL+L QGSVV LDGLAGEP+D+L+NG LIAQGEVVVV DK+G+R+TDIITPSER Sbjct: 72 RMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSER 131 Query: 160 IRKLNR 165 +R+L+R Sbjct: 132 MRRLSR 137
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 74.5 bits (183), Expect = 5e-17 Identities = 76/356 (21%), Positives = 117/356 (32%), Gaps = 75/356 (21%) Query: 1 MKK--FAVAAAGLAVATGAHASDGSVTLFGLIDAGVSYVSNEGGKRNVYFDDGIAVPNLW 58 MKK A+ A L VA A VTL+G I AGV + + Sbjct: 1 MKKSLIALTLAALPVAAMA-----DVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVD 55 Query: 59 -----GLRGTEDLGGGAKAIFELTSQYALGNGAALPTPGSMFSRTALVGLWSERLGSVTL 113 G +G EDLG G KAI+++ + T +R + +GL G + + Sbjct: 56 LGSKIGFKGQEDLGNGLKAIWQVEQ-----KASIAGTDSGWGNRQSFIGLKGG-FGKLRV 109 Query: 114 GQQYDFMTDSLTFGSFDGAFRYGGLYNFRQGPFSKLGIPDNPTGSFDFDRLAGSSRVPNS 173 G+ + D+ +D Y G+ + P+ S Sbjct: 110 GRLNSVLKDTGDINPWDSKSDYLGVNKIAE--------PEA---------------RLIS 146 Query: 174 VKYTSANLNGLVFGLMYGFGNQAGGGLAANSTVSAGLKYETGSFALGAAYVDVKYPQMNN 233 V+Y S GL + Y + AG + + AG Y+ G F + ++ Q+ Sbjct: 147 VRYDSPEFAGLSGSVQYALNDNAGRH--NSESYHAGFNYKNGGFFVQYGGAYKRHHQVQE 204 Query: 234 --GHDGLRNWGLGARYALSAFDLNL-LYTNTRNT--LTGAAIDVIQAGVRYVGAPWTIGA 288 + + L + Y L + ++ + Q V A Sbjct: 205 NVNIEKYQIHRLVSGY--DNDALYASVAVQQQDAKLVEENYSHNSQTEV---------AA 253 Query: 289 NYEYMKGNAQLDRNYAH----------------QVTAAAQYALSKRTSAYVETVYQ 328 Y GN +YAH QV A+Y SKRTSA V + Sbjct: 254 TLAYRFGNVTPRVSYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWL 309
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 5e-12 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 16/184 (8%) Query: 24 ASRTRPKPGERRVHILQTLASMLEAPKSEKITTAALAARLDVSEAALYRHFSSKAQMFEG 83 A +T+ + E R HIL + + +A V+ A+Y HF K+ +F Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 84 LIEFIEETFFGLVNQIAANEPNGVLQA-RSIALMLLNFSAKNPGMTRVLTGEALVGEHER 142 + E E L + A P L R I + +L + ++ + H+ Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLME----IIFHKC 117 Query: 143 LAERVNQMLERVEASIKQCLR---VALLEAQAHAAGGGAPPPVPLPDDYDPALRASLVIS 199 ++++ + ++ L+ A LP D A ++ Sbjct: 118 EFVGEMAVVQQAQRNLCLESYDRIEQTLKH-CIEAKM-------LPADLMTRRAAIIMRG 169 Query: 200 YVLG 203 Y+ G Sbjct: 170 YISG 173
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 43.7 bits (103), Expect = 5e-07 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%) Query: 180 IPVISPIGFGEDGLSYNINADLVAGKLATVLNAEKLVMMTNIPGVMDKEG----NLLTDL 235 +PVI G G+ I+ DL KLA +NA+ +++T++ G G L ++ Sbjct: 197 VPVILEDG-EIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREV 255 Query: 236 SAREIDALFEDGT-ISGGMLPKISSALDAAKSGVKSVHI 273 E+ +E+G +G M PK+ +A+ + G + I Sbjct: 256 KVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAII 294 Score = 36.7 bits (85), Expect = 8e-05 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 10/60 (16%) Query: 31 GKTVVIKYGGNAMTEERLKQGF----------ARDVILLKLVGINPVIVHGGGPQIDQAL 80 GK VVI GGNA+ + K + AR + + G VI HG GPQ+ L Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.6 bits (217), Expect = 9e-23 Identities = 30/127 (23%), Positives = 60/127 (47%) Query: 1 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVDLHLGND 60 M+ LV DD+ L + L R GY VR N + A + + D+ + ++ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 120 + L+ + +PD +LV++ + TA++A + GA +YL KP ++ ++ + + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 EVQAEEA 127 E + + Sbjct: 121 EPKRRPS 127 Score = 45.2 bits (107), Expect = 4e-08 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 3/101 (2%) Query: 75 DARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQAEEALENPVVL 134 I+ + I + L+ VE + + + L Sbjct: 375 TREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGL---YDR 431 Query: 135 SVDRLEWEHIQRVLAENNNNISATARALNMHRRTLQRKLAK 175 + +E+ I L N A L ++R TL++K+ + Sbjct: 432 VLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.016 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 15/68 (22%) Query: 17 IIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGKTEIAR---RLAKL 73 ++G++ A + + ++ + T +++ G +G GK +AR K Sbjct: 139 LVGRSAAMQEI------YRVLARLMQ------TDLTLMITGESGTGKELVARALHDYGKR 186 Query: 74 ADAPFIKI 81 + PF+ I Sbjct: 187 RNGPFVAI 194
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 73.3 bits (179), Expect = 3e-16 Identities = 70/209 (33%), Positives = 95/209 (45%), Gaps = 7/209 (3%) Query: 260 ANAAPPDASG-ALAALQDAADSARATLAASSAPAALQQAA-PAALAANASAAAASAAPSL 317 A P DA G L A++ S P+ + AA P AAP L Sbjct: 172 TTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVL 231 Query: 318 APPVGTPDWTDALSQKVVFLSNAHQQSAELTLNPPDLGPLQVVLRVADNHAHALFVSQHA 377 + P+G+ +W +LSQ + + QQSAEL L+P DLG +Q+ L+V DN A VS H Sbjct: 232 SAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQ 291 Query: 378 QVRDAVEAALPKLREAMEAGGLGLGSASVSDGGFASAQQQQTPQRQSSDGSATRRAFGAS 437 VR A+EAALP LR + G+ LG +++S F+ QQ + Q+QS +A Sbjct: 292 HVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQR-TANHEPLAGE 350 Query: 438 TADAALDELAAASSGGAARRTVGMVDTFA 466 D L S VD FA Sbjct: 351 DDDT----LPVPVSLQGRVTGNSGVDIFA 375
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 59.8 bits (144), Expect = 2e-14 Identities = 43/140 (30%), Positives = 74/140 (52%) Query: 1 MAQSFPLQLLLERAQDDLDTAAKQLGRAQRERTDAQAQLDALMRYRDEYRVRFAESAQSG 60 MA+ L L + A+ +++ AA+ LG +R A+ QL L+ Y++EYR +G Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60 Query: 61 MPAGNWRNFQAFLDTLDAAIEQQRRVLAAAQTRIDAARPEWQAKKRTLGSYEILQARGAR 120 + + W N+Q F+ TL+ AI Q R+ L ++D A W+ KK+ L +++ LQ R + Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120 Query: 121 QDAQRAAKREQRDADEHAAK 140 + +Q+ DE A + Sbjct: 121 AALLAENRLDQKKMDEFAQR 140
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 108 bits (271), Expect = 3e-31 Identities = 64/184 (34%), Positives = 106/184 (57%), Gaps = 4/184 (2%) Query: 37 AAAALAAELQRVRDAAHAEGLAAGHVEGQALGYQAGYEQGRAKGFDEGRAEAHTHAAQLA 96 A +L +L +++ AH +G AG EG+ G++ GY++G A+G ++G AEA + A + Sbjct: 36 AEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIH 95 Query: 97 A----LAASFRDALAGVERDLADDIATLALEIAQQVVRQHVQHDPAALIAAAREVLAAEP 152 A L + F+ L ++ +A + +ALE A+QV+ Q D +ALI +++L EP Sbjct: 96 ARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEP 155 Query: 153 ALAGAPHLIVNPADLPVVEAYLKDELDTLGWSVRTDTSIERGGCRAHASTGEIDATLTTR 212 +G P L V+P DL V+ L L GW +R D ++ GGC+ A G++DA++ TR Sbjct: 156 LFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATR 215 Query: 213 WERV 216 W+ + Sbjct: 216 WQEL 219
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 298 bits (765), Expect = e-102 Identities = 114/324 (35%), Positives = 191/324 (58%) Query: 5 GLNKSALLLMSIGEEEAAQVFKFLAPREVQKIGAAMAALKNVTREQVEDVLNDFVQEAEK 64 G K+A+LL+SIG E +++VFK+L+ E++ + +A L+ +T E ++VL +F + Sbjct: 17 GKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKELMMA 76 Query: 65 HTALSLDSSEYIRTVLTKALGEDKAGVLIDRILQGSDTSGIEGLKWMDSAAVAELIKNEH 124 + +Y R +L K+LG KA +I+ + + E ++ D A + I+ EH Sbjct: 77 QEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQQEH 136 Query: 125 PQIIATILVHLDRDQASEIASCFTERLRNDVLLRIATLDGIQPTALRELDDVLTGLLSGS 184 PQ IA IL +LD +AS I S ++ +V RIA +D P +RE++ VL L+ Sbjct: 137 PQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKLASL 196 Query: 185 DNLKRAPMGGIRTAAEILNFMTSVHEEAVIENVKQYDPDLAQKIIDQMFVFENLLDLEDR 244 + GG+ EI+N E+ +IE++++ DP+LA++I +MFVFE+++ L+DR Sbjct: 197 SSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLLDDR 256 Query: 245 AIQLLLKEVESEALIIALKGAPPALRQKFLSNMSQRAAELLAEDLDARGPVRVSEVETQQ 304 +IQ +L+E++ + L ALK +++K NMS+RAA +L ED++ GP R +VE Q Sbjct: 257 SIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVEESQ 316 Query: 305 RKILQVVRNLAESGQIVIGGKAED 328 +KI+ ++R L E G+IVI E+ Sbjct: 317 QKIVSLIRKLEEQGEIVISRGGEE 340
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 468 bits (1206), Expect = e-162 Identities = 254/562 (45%), Positives = 360/562 (64%), Gaps = 37/562 (6%) Query: 53 LSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVP 112 L+R++ NPR+P ++ + A+A +VA+VLW++ PDYR L+SNLSD+DGGAI+A L Q N+P Sbjct: 16 LNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIP 75 Query: 113 YKFADAGGAILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGISQFAEQVNYQRAL 172 Y+FA+ GAI VPA++VHE RL+LA GLPKGG+VGFEL+D +KFGISQF+EQVNYQRAL Sbjct: 76 YRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRAL 135 Query: 173 EGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTR 232 EGEL RT+E++ V++ARVHLA+PKPS+FVR++++PSASV V L PGR LDEGQ+ AV Sbjct: 136 EGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVH 195 Query: 233 MVSSSVPDMPAKNVTIVDQDGNLLTQT-ASATGLDASQLKYVQQIERNTQKRIDAILAPI 291 +VSS+V +P NVT+VDQ G+LLTQ+ S L+ +QLK+ +E Q+RI+AIL+PI Sbjct: 196 LVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPI 255 Query: 292 FGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPGAL 351 G GN +QV+A +DF+ EQT E Y PNG ++ +RS+Q + S ++ GVPGAL Sbjct: 256 VGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGAL 315 Query: 352 SNTPPQPASAPIVA-------------SNGQPAGPAATPVSDRKDSTTNYELDKTVRHVE 398 SN P P API ++ +A P S +++ T+NYE+D+T+RH + Sbjct: 316 SNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTK 375 Query: 399 QSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNV 458 ++G I+RLSVAVVVNY+ D K PL AD++ Q++ L ++AMG+ +KRGD++NV Sbjct: 376 MNVGDIERLSVAVVVNYKTLADGKP----LPLTADQMKQIEDLTREAMGFSDKRGDTLNV 431 Query: 459 VNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR---AFP 515 VNS FSA + LP+W+Q I+ +WL V A L+ VRP L R Sbjct: 432 VNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAK 491 Query: 516 PPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENERNRYERNLDYA 575 E A + + L+ D + N+R E Sbjct: 492 AAQEQAQVRQETEEAVEVRLSKDEQLQQRR----------------ANQRLGAEVMSQRI 535 Query: 576 RTIARQDPKIVATVVKNWVSDE 597 R ++ DP++VA V++ W+S++ Sbjct: 536 REMSDNDPRVVALVIRQWMSND 557
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 61.2 bits (148), Expect = 9e-16 Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 8/111 (7%) Query: 3 APVNGIASALQQMQAMAAQAAGGASPATSLAGSGAASAGSFASAMKASLDKISGDQQKAL 62 + + GI + Q+QA A A S SFA + A+LD+IS Q A Sbjct: 1 SAIQGIEGVISQLQATAMSARAQES--------LPQPTISFAGQLHAALDRISDTQTAAR 52 Query: 63 GEAHAFEIGAQNVSLNDVMVDMQKANIGFQFGLQVRNKLVSAYNEIMQMSV 113 +A F +G V+LNDVM DMQKA++ Q G+QVRNKLV+AY E+M M V Sbjct: 53 TQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 62.5 bits (152), Expect = 4e-15 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 10 AVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIP 68 A+ +G P V K + + + A + G+ + + +L +D IP Sbjct: 268 AIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIP 327 Query: 69 PQLYQAVAELLAWLYALERDA 89 + +A AE+L WL + Sbjct: 328 AEQIEATAEVLRWLERQNIEK 348