>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 31.3 bits (71), Expect = 0.003 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 9/75 (12%) Query: 67 EQAFALCDELSEQAKLAGAVNTLSVLADGKIRGDNTDGLGLVADLQRNLGSLTGLKVLLV 126 E+A + SE+ L+ ++A +R +G L ++ GS L +V Sbjct: 88 EEALDAVAKQSEKPHLS------QLMAA--VRSKVMEGHSLADAMKCFPGSFERLYCAMV 139 Query: 127 GAGGAARGSVLPLLQ 141 AG + G + +L Sbjct: 140 AAGETS-GHLDAVLN 153
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 38.2 bits (89), Expect = 4e-05 Identities = 41/210 (19%), Positives = 77/210 (36%), Gaps = 26/210 (12%) Query: 31 SFLILGGAGSIGQAVTKEIFKRQPKKLHVVDISENNMVELVRDLRSSFGYIDGEFNTYAL 90 +L+ G AG IG V+K + + + + + ++++ V L + F + + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA--QPGFQFHKI 59 Query: 91 DIGSIEYDAFIKADGHYDYVLNLSALKHVR-SEKDPFTLMRMIDVNI------------F 137 D+ E + A GH++ V VR S ++P D N+ Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAY---ADSNLTGFLNILEGCRHN 116 Query: 138 NTDKTVQQAIDS--GAKKYFCVST-DKAANPVNMMGASKRIMEMFLMRKSEHIAISTA-- 192 + + S G + ST D +PV++ A+K+ E+ S + Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL 176 Query: 193 RFANVAFSDGS---LLHGFNQRIQKSQPIV 219 RF V G L F + + + + I Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAMLEGKSID 206
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 39.4 bits (91), Expect = 2e-05 Identities = 29/100 (29%), Positives = 49/100 (49%) Query: 236 ASSTRSQTAVAQWGPVAVSQTAPLLQQAHEMLSPLREQLKFQIDQQIKQAEIRLDPPELG 295 A+S Q P + +HE L + + Q + AE+RL P +LG Sbjct: 210 AASPLITPHQTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLG 269 Query: 296 KVELNVRLDGDRLHIQMHAANSSVRDALLMGLDRLRAELA 335 +V++++++D ++ IQM + + VR AL L LR +LA Sbjct: 270 EVQISLKVDDNQAQIQMVSPHQHVRAALEAALPVLRTQLA 309
>FLAGELLIN#Flagellin signature. Length = 507 Score = 107 bits (267), Expect = 2e-28 Identities = 76/269 (28%), Positives = 123/269 (45%), Gaps = 8/269 (2%) Query: 4 VMTNNASNIAQNSVNRNNDLLSNAMERLSTGLRINSAADDAAGLQIASRMEANVTGMETA 63 + TN+ S + QN++N++ LS+A+ERLS+GLRINSA DDAAG IA+R +N+ G+ A Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 NRNVSDATSMLQTADGALDELATIANRQKELATQAANGVNSTADRAALNDEFTALTAEMT 123 +RN +D S+ QT +GAL+E+ R +EL+ QA NG NS +D ++ DE E+ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 124 RIMEKTTYAGNDLFGAISGNVSFQIGAGSGETLTV------SGASGITGIRSGIATLSGV 177 R+ +T + G + + Q+GA GET+T+ + G+ G + V Sbjct: 124 RVSNQTQFNGVKVLSQ-DNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATV 182 Query: 178 KASTL-GAQIGEIDDFIDAVGSMRSDLGANINRLGHTASNLTNVTENTKAAAGRIMDADF 236 + D + R D+ + TA + + A D Sbjct: 183 GDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAE 242 Query: 237 ASETAAMSKNQLLVQAGTNILSSSNQNTG 265 + + K + + G Sbjct: 243 NNTAVDLFKTTKSTAGTAEAKAIAGAIKG 271 Score = 64.7 bits (157), Expect = 6e-14 Identities = 43/204 (21%), Positives = 74/204 (36%) Query: 68 SDATSMLQTADGALDELATIANRQKELATQAANGVNSTADRAALNDEFTALTAEMTRIME 127 + + T A + + + V + + + Sbjct: 303 INGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANN 362 Query: 128 KTTYAGNDLFGAISGNVSFQIGAGSGETLTVSGASGITGIRSGIATLSGVKASTLGAQIG 187 + + T+ +G+ + I + + + Sbjct: 363 AVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLA 422 Query: 188 EIDDFIDAVGSMRSDLGANINRLGHTASNLTNVTENTKAAAGRIMDADFASETAAMSKNQ 247 ID + V ++RS LGA NR +NL N N +A RI DAD+A+E + MSK Q Sbjct: 423 SIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQ 482 Query: 248 LLVQAGTNILSSSNQNTGLVMGLL 271 +L QAGT++L+ +NQ V+ LL Sbjct: 483 ILQQAGTSVLAQANQVPQNVLSLL 506
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 36.8 bits (85), Expect = 1e-04 Identities = 32/270 (11%), Positives = 95/270 (35%), Gaps = 17/270 (6%) Query: 40 PTHRLESYNKWAKVTQGQHRISAAQVAEQGLQQVQQ---------LLKQLQSQVKQSLAS 90 + +L ++ + + + ++ Q+ + ++ + +L++ S Sbjct: 167 KSPKLNPFDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLS 226 Query: 91 SASEQSMLEQTARSKLIQNKLSQLAISYDNKPLIDHQLNLISAKRPAAQHSFSLKSVDLT 150 + E + + ++ NK + +N + + LNL+S + S + Sbjct: 227 NLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLEN 286 Query: 151 ASKQRDERLII-QVGNQSTSLVLPANKQPQQLLTKINDSLKALEIKANHSKEGKLIFTSP 209 +D+ + + +V+ + + +N++LK E K G+L+ + Sbjct: 287 FYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTAN- 345 Query: 210 KSQWQQIQTGILMTGQGQRLPAGEPRTIKVNEELSWQDPREWRFGSNAELKQAIAKIAKS 269 ++ + I + + I ++E + + + +LK++ + Sbjct: 346 IYALKKGLSHIELANYYS--ENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQ 403 Query: 270 LHKVEQQLQELSDSKQKILQQLQQLSLKKD 299 L + E++L L +L + + Sbjct: 404 LLQNEEELNYL----YSVLTNINNADNYDE 429
>FLAGELLIN#Flagellin signature. Length = 507 Score = 48.5 bits (115), Expect = 2e-08 Identities = 33/201 (16%), Positives = 66/201 (32%), Gaps = 5/201 (2%) Query: 1 MRVSMHNLYANNLQSLQNSTVDIARLNEMMATGSSILRPSDDPIGAVKVMGNERDMAATE 60 ++ ++L +L S ++ E +++G I DD G ++ Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 QYLKNTESLSSSFGRAETYMSSMVELQNRMREITVSASNGSLSAEDRTAYAAELEELLES 120 Q +N S E ++ + R+RE++V A+NG+ S D + E+++ LE Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 FSDVLNAKDEGGNYLFSGNETDTPPIGKDAAGNYVYQGDTSHREVQTSSSSWMTANSTAA 180 V N G + S + +G + S + + Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKI-----DVKSLGLDGFNVNG 176 Query: 181 DFIFSNGSADILNQTKDFIDA 201 + G + D Sbjct: 177 PKEATVGDLKSSFKNVTGYDT 197
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 167 bits (425), Expect = 2e-48 Identities = 95/320 (29%), Positives = 158/320 (49%), Gaps = 8/320 (2%) Query: 2 SMLNIGMSGLNASMAALTATSNNVSNAMVPGYSRQQVVMSSVGNGTYGS---GSGVMVDG 58 S++N MSGLNA+ AAL SNN+S+ V GY+RQ +M+ + G+GV V G Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61 Query: 59 VRRISDQYQVTQQWNATSNLGFAETQASYFGQVEQIFGSEGNSISAGLDLLFASLNSAME 118 V+R D + Q A + + +++ + + +S++ + F SL + + Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLVS 121 Query: 119 QPNEIALRQGVLNEAKALTQRFNSISEGVHTQVNQIEGQIGASAKEINAQLETISSFNEQ 178 + A RQ ++ +++ L +F + + + Q Q+ IGAS +IN + I+S N+Q Sbjct: 122 NAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLNDQ 181 Query: 179 IQAS--NASGNVPLSLLDARDAAIDDLSKIIDVNIVHDANNMVNISLVQGQPLLSGTTAS 236 I +G P +LLD RD + +L++I+ V + NI++ G L+ G+TA Sbjct: 182 ISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTAR 241 Query: 237 KIQV---SPDPSNPLFSQLSVQFGQSSFPLDESAGGSLGALLDYRDNSLVESIAFNNELA 293 ++ S DPS + + G P GSLG +L +R L ++ +LA Sbjct: 242 QLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQLA 301 Query: 294 QTMADEFNTILKAGTDLNGN 313 A+ FNT KAG D NG+ Sbjct: 302 LAFAEAFNTQHKAGFDANGD 321 Score = 69.2 bits (169), Expect = 9e-15 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 3/110 (2%) Query: 346 QDGTPGDNSNLKALVELADKSFTFDSMGIDATMGDAFASKIGELGSASRQAKMAKETAEK 405 +D DN N +AL++L S ++G + DA+AS + ++G+ + K + T Sbjct: 438 EDAGDSDNRNGQALLDLQSNS---KTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGN 494 Query: 406 VQIEAQSQWASTSGVNMDEEGVNLIIYQQSYQANAKVISTADQLFQTILN 455 V + +Q S SGVN+DEE NL +QQ Y ANA+V+ TA+ +F ++N Sbjct: 495 VVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 48.6 bits (115), Expect = 1e-09 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 16/124 (12%) Query: 26 GALKLVSQQFEAQFLQTVLKQMRSASDVMADEDSPLSSQNDGMYRDWHDAELAGRLSQMQ 85 ++ V++Q E F+Q +LK MR A +D SS++ +Y +D ++A +++ + Sbjct: 31 ANIRPVARQVEGMFVQMMLKSMRDALP----KDGLFSSEHTRLYTSMYDQQIAQQMTAGK 86 Query: 86 STGLASVMTKQLSSA------------LKSSPETVASNQHETVNVANPNTRAMQPALIVP 133 GLA +M KQ++ +K ETV Q++ ++ +P Sbjct: 87 GLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLETVVRYQNQALSQLVQKAVPRNYDDSLP 146 Query: 134 FIAK 137 +K Sbjct: 147 GDSK 150
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 343 bits (882), Expect = e-119 Identities = 151/381 (39%), Positives = 219/381 (57%), Gaps = 15/381 (3%) Query: 1 MKKIALFITSMLLALLPLL-PVQAEIQNRYLMDIVDVQGIRDNQLVGYGLVVGLDGTGDK 59 M+ + + +++ + LP L A+ + DI +Q RDNQL+GYGLVVGL GTGD Sbjct: 1 MRVLRIIAAALVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDS 60 Query: 60 -NQVKFTSQSVVNMLKQFGVQIDDKTDPKLKNVAAVAVSATVPPLASPGQTLDITVSSLG 118 FT QS+ ML+ G+ KN+AAV V+A +PP ASPG +D+TVSSLG Sbjct: 61 LRSSPFTEQSMRAMLQNLGITTQG-GQSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLG 119 Query: 119 DAKSLRGGTLLMTPLRAVDGEIYAVAQGNLVVGGVSAQGRNGSSITVNIPTVGNIPNGAL 178 DA SLRGG L+MT L DG+IYAVAQG L+V G SAQG + +++T + T +PNGA+ Sbjct: 120 DATSLRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAI 178 Query: 179 LEAAMKSNFNETEHIVLNLKQPSFKTARNIERAVNEL----FGPSVAEADSNAKVMVRAP 234 +E + S F ++ ++VL L+ P F TA + VN +G +AE + ++ V+ P Sbjct: 179 IERELPSKFKDSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKP 238 Query: 235 SSNRERVTFMSMLEELQIEQGRKSPRVVFNSRTGTVVMGGDVVVRKAAVSHGNLTVSIVE 294 + M+ +E L +E +VV N RTGT+V+G DV + + AVS+G LTV + E Sbjct: 239 -RVADLTRLMAEIENLTVETDTP-AKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTE 296 Query: 295 QQNVSQPNGAFLGQAQGETVVTNDSTVDIEQGNGHMFVWEEGVALDDIVRAVNSLGASPM 354 V QP F G+T V + + Q + + EG L +V +NS+G Sbjct: 297 SPQVIQPA-PFSR---GQTAVQPQTDIMAMQEGSKVAI-VEGPDLRTLVAGLNSIGLKAD 351 Query: 355 DLMSILQALDEAGALEAELVV 375 +++ILQ + AGAL+AELV+ Sbjct: 352 GIIAILQGIKSAGALQAELVL 372
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 144 bits (364), Expect = 5e-45 Identities = 72/223 (32%), Positives = 112/223 (50%), Gaps = 15/223 (6%) Query: 12 LVLLLSGCISHIPELDTKPGKPEWAPPEIDYSLPDAKDGSVYRPGFMLT-----LFKDKR 66 LVL L+GC + IP + P + +GS+++ + LF+D+R Sbjct: 15 LVLSLTGC-AWIP---STPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDRR 70 Query: 67 AFREGDILTVALDEKTYSSKSADTKTNK--NTGLSLDGQGTTGNNSIAGSG---EANLGS 121 GD LT+ L E +SKS+ ++ T D + EA+ G+ Sbjct: 71 PRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGGN 130 Query: 122 SFSGTGSSTQQNQLSGSITVTVAKVLPNGALLIRGEKWLRLNQGDEYLRLLGLIRTDDIG 181 +F+G G + N SG++TVTV +VL NG L + GEK + +NQG E++R G++ I Sbjct: 131 TFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTIS 190 Query: 182 NDNTISSQRIADARIIYGGQGAITDSNRMGWASRYFNSPWFPL 224 NT+ S ++ADARI Y G G I ++ MGW R+F + P+ Sbjct: 191 GSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLN-LSPM 232
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.5 bits (97), Expect = 2e-06 Identities = 11/47 (23%), Positives = 21/47 (44%) Query: 213 QVRQGALEGANVNVVEEMVEMISTQRAYEMNAKVVSASDDMLKFLNQ 259 Q+ + VN+ EE + Q+ Y NA+V+ ++ + L Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 40.7 bits (95), Expect = 4e-06 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 17/89 (19%) Query: 3 SALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDEQNQL 62 S + + +GL A + T +NN+++ N G+ R + L Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI--------------MAQANSTL 47 Query: 63 PAGLQLGTGTRVAGTQKVFTPGDMLTTNQ 91 AG +G G V+G Q+ + D TNQ Sbjct: 48 GAGGWVGNGVYVSGVQREY---DAFITNQ 73
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 33.8 bits (77), Expect = 0.001 Identities = 15/41 (36%), Positives = 22/41 (53%) Query: 360 LEGSNVDQTAEMVNLMTAQRNYQSNAKVLDTNSTMQQALLN 400 S V+ E NL Q+ Y +NA+VL T + + AL+N Sbjct: 504 QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 33.0 bits (75), Expect = 0.002 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Query: 2 SFNIALSGLQATTQDLNTISNNIANSSTVGFRSGR----SEFSAIYNGGQAG-GVNV 53 N A+SGL A LNT SNNI++ + G+ S + GG G GV V Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYV 59
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 32.6 bits (74), Expect = 4e-04 Identities = 8/39 (20%), Positives = 19/39 (48%) Query: 98 SNVNTVEEMADMMAASRSFETSVEVMNRARSMQQGLLQL 136 S VN EE ++ + + + +V+ A ++ L+ + Sbjct: 507 SGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 26.5 bits (58), Expect = 0.048 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 9 IAGAGMNAQTIRLNTVASNLANAGAAAESPDQAFRALKPVFSTIYKQTQEGELAGAHVE 67 A +G+NA LNT ++N+++ A + + ST+ G G +V Sbjct: 6 NAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI--MAQANSTLGAGGWVGN--GVYVS 60
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 25.8 bits (56), Expect = 0.024 Identities = 11/37 (29%), Positives = 18/37 (48%) Query: 39 AEVSDDCKLIAHNQPQLEQLADVDLDKVAQIRQSLID 75 A + +D H QPQ LA +A+ R+ L++ Sbjct: 6 APLYEDVIWRTHLQPQDPTLAQAVRATIAKHREHLLE 42
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.7 bits (59), Expect = 0.022 Identities = 7/21 (33%), Positives = 11/21 (52%) Query: 58 VIFGALAYFISPIDAIPDLTP 78 ++ GALA P+ P + P Sbjct: 20 MMAGALAILQLPVAQYPTIAP 40
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.1 bits (156), Expect = 1e-12 Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 8/108 (7%) Query: 762 ILIVEDNLVNQKVASLLVKQAGFDFIIANNGQEAYDFISAGEAFHAILMDCMMPVMDGFT 821 IL+ +D+ + V + + +AG+D I +N + +I+AG+ ++ D +MP + F Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDENAFD 64 Query: 822 ATEKIREWESQNSQQRLPIIALTA-SVLDQDIEKCYQSGMDDYLAKPF 868 +I++ + LP++ ++A + I+ + G DYL KPF Sbjct: 65 LLPRIKKA-----RPDLPVLVMSAQNTFMTAIKA-SEKGAYDYLPKPF 106
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.002 Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 22/135 (16%) Query: 169 SPKLGLSRHQQAPVTLAPTINPTPLSAESSGLEQGQKKLSGIQTNVSQTPSFTPTPITKT 228 SPK S Q A +PT E + + +T S P+T++ Sbjct: 1130 SPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTT---ADTEQPAKETSSNVEQPVTES 1186 Query: 229 STVPKTAKTIDSPEANIAAAQQAVVQPKIPADNPMAKGNLATGQNPRVRVRVSAKQKRQI 288 +TV +++PE A Q V N + P+ R R R + Sbjct: 1187 TTVNTGNSVVENPENTTPATTQPTV-------------NSESSNKPKNRHR------RSV 1227 Query: 289 QPVPTTPTEAPVNKS 303 + VP A + + Sbjct: 1228 RSVPHNVEPATTSSN 1242
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 76.1 bits (187), Expect = 1e-18 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 14/119 (11%) Query: 76 KILFANDSYYIDPQYYPQVEVIASFMQKF--PNTQAVIEGHCSKTGSHQHNQVLSQNRAN 133 +LF + + P+ ++ + S + + V+ G+ + GS +NQ LS+ RA Sbjct: 220 DVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQ 279 Query: 134 AVSSLLAERFGIDSGRLSAVGYSFDRPIDPTHTASAHK----------INRRVIAELTG 182 +V L + GI + ++SA G P+ +T K +RRV E+ G Sbjct: 280 SVVDYLISK-GIPADKISARGMGESNPV-TGNTCDNVKQRAALIDCLAPDRRVEIEVKG 336
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 299 bits (767), Expect = 4e-99 Identities = 93/441 (21%), Positives = 200/441 (45%), Gaps = 11/441 (2%) Query: 20 MMTDAPTSHRLIIWALAALAVTFLVWAYFAELDQVTTGMGKVIPSSQVQVIQSLDGGILQ 79 + T RL+ + + V + + +++ V T GK+ S + + I+ ++ I++ Sbjct: 49 IETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVK 108 Query: 80 EMYVQEGLIVTKGQPLVRIDATRFQSDFAQQEQEVNSLVANVVRLQAELNSITISGITND 139 E+ V+EG V KG L+++ A ++D + + + R Q SI ++ Sbjct: 109 EIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK---- 164 Query: 140 WREQVKISPQPLIFPAALEEGDPKLTNRQREEYTGRLDNLSNQLEIQARQIQQRNQEIQE 199 ++K+ +P + E + R + NQ + + ++ E Sbjct: 165 -LPELKLPDEPY--FQNVSEEEVL---RLTSLIKEQFSTWQNQKYQKELNLDKKRAERLT 218 Query: 200 LASKIRTLTTSFQLVSRELELTRPLAEKGIVPEVELLKLQRVVNDIQGELASLRLLRPKV 259 + ++I ++ L+ L K + + +L+ + + EL + ++ Sbjct: 219 VLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQI 278 Query: 260 KSTMDEAILKRRESVLIYAADSRAQLNEMQTKLSRMNEAQVGAQDKVSKAEIVSPVNGTV 319 +S + A + + ++ + +L + + + +++ + I +PV+ V Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKV 338 Query: 320 KTIHINTLGGVVQPGVDIIEIVPSEDKLLIETKIIPKDIAFLHPGLPAVVKVTAYDFTRY 379 + + ++T GGVV ++ IVP +D L + + KDI F++ G A++KV A+ +TRY Sbjct: 339 QQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRY 398 Query: 380 GGLNGVVEHISADTTQDEEGNSFYIVKVRTEFSSLTKDDGTQMPIIPGMLTSVDVITGQR 439 G L G V++I+ D +D+ + V + E + L+ +P+ GM + ++ TG R Sbjct: 399 GYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLS-TGNKNIPLSSGMAVTAEIKTGMR 457 Query: 440 SVLEYILNPILRAKDTALRER 460 SV+ Y+L+P+ + +LRER Sbjct: 458 SVISYLLSPLEESVTESLRER 478
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 66.9 bits (163), Expect = 1e-12 Identities = 45/197 (22%), Positives = 68/197 (34%), Gaps = 17/197 (8%) Query: 5201 GDDAVNAGEGNDIIFGDLVSFDGIDGQGYSALQAFVAQETSQQATDVTVQDIHDFISNNT 5260 D A + + + + G D +S + + D+ N + Sbjct: 278 DRDFYTATDSSKALIFSVWDAGGTDTFDFSGYS----NNQRINLNEGSFSDVGGLKGNVS 333 Query: 5261 HLFGANNAE----DGADTLEGGEGNDILFGQGGNDTLIGGLDNDTMIGGLGEDTFKWTVD 5316 G G D L G ++IL G GND L GG DT+ GG G DTF + Sbjct: 334 IAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSG 393 Query: 5317 SVDGTDTTDHITDFNLAEDKLDLSDILQGDTVHELAQH---------LSFTDENGSTSIN 5367 D I DF DK+DLS + + L + N T++ Sbjct: 394 QDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITNLW 453 Query: 5368 IDTDGNGSFDQHIVLDG 5384 + G+ S D + + G Sbjct: 454 LHEAGHSSVDFLVRIVG 470
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 80.4 bits (198), Expect = 3e-17 Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 17/184 (9%) Query: 1822 FVEAVFTHEQIADDSITVVGTDNINNLIFGSTNTDSLTGANLDDRIFGREDNDILIGLSG 1881 F A + + + GTD + + + +L + D + G + N + Sbjct: 281 FYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSD-VGGLKGNVSIAHGVT 339 Query: 1882 NDELIGGSGDDNIQGGEDNDFVIGGIGDDLLDGGVGRDYLSGGQGNDSLDGGELNGSDDG 1941 + IGGSG+D + G ++ + GG G+D+L GG G D L GG G D+ G Sbjct: 340 IENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYG-------- 391 Query: 1942 ERDFFVWESDTADNSTDTVFNFNPDIDVLDLSDLLIGEESGNLEDFLFFSFSGGNTTITV 2001 D+ + D + +F ID +DLS E F+ G + Sbjct: 392 ------SGQDSTVAAYDWIADFQKGIDKIDLSAF--RNEGQLSFVQDQFTGKGQEVMLQW 443 Query: 2002 DADG 2005 DA Sbjct: 444 DAAN 447 Score = 62.7 bits (152), Expect = 8e-12 Identities = 29/159 (18%), Positives = 46/159 (28%), Gaps = 43/159 (27%) Query: 1833 ADDSITVVGTDNINNLIFGSTNTDSLTGANLDDRIFGREDNDILIGLSGNDELIGGSGDD 1892 ++ + + + + G S+ + G NDIL+G S ++ L GG+G+D Sbjct: 309 YSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGND 368 Query: 1893 NIQGGEDNDFVIGGIGDDLLDGGVG-----------RDYLSGGQGNDSLDGGELNG---- 1937 + GG D + GG G D G G D+ G D Sbjct: 369 VLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFV 428 Query: 1938 ----------------------------SDDGERDFFVW 1948 + DF V Sbjct: 429 QDQFTGKGQEVMLQWDAANSITNLWLHEAGHSSVDFLVR 467 Score = 38.4 bits (89), Expect = 3e-04 Identities = 22/116 (18%), Positives = 30/116 (25%), Gaps = 14/116 (12%) Query: 1833 ADDSITVVGTDNINNLIFGSTN---TDSLTGANLDDRIFGREDNDILIGLSGNDELIGGS 1889 A + ++ T GA + D I + L G N G Sbjct: 214 AVYAEDSYQFSIMSYWGENETGADYNGHYGGAPMIDDIAAIQR---LYG--ANMTTRTGD 268 Query: 1890 GDDNIQGGEDNDFVIGGIGDDLL------DGGVGRDYLSGGQGNDSLDGGELNGSD 1939 D DF L GG SG N ++ E + SD Sbjct: 269 SVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSD 324
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.008 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 5/79 (6%) Query: 83 GYYFYQQLQAQQAETAELQQTLEQKLQTVLVEPNQRIASLEQQ----QNQFKSSVDLTLA 138 + Q+ + E L ++ L + I S +++ FK+ + L Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRV-YKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR 305 Query: 139 QTLDQQTQLEERVSIIAQR 157 QT D L ++ +R Sbjct: 306 QTTDNIGLLTLELAKNEER 324
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 28.9 bits (64), Expect = 0.003 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 44 QLEFDGASKIVINKQEPLHEIWLATQFGGFHFSYVDGKW------MDERNGHEFMPFLVE 97 +L+ G S ++ N QEP L GG+ F Y +GK+ +D + FLV+ Sbjct: 164 ELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVD 223 Query: 98 SI 99 I Sbjct: 224 LI 225
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.011 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 14/96 (14%) Query: 165 VIEVEDVAATDVDTIGGELTNHERFPKGVNVGFMQVLNSGHIKLRVYERGAAETLACGTG 224 V EV + A+ + G + ++P V +G SG +Y++G +L Sbjct: 174 VTEVAPIEASTASSDAGTYNDQNKYPAFVRLG------SG--SQFIYKKGDNYSLILNNH 225 Query: 225 ACAAVVVGILQGKLDRNVQVDLPGGSLM-INWDGEG 259 VG KL + G+ +N + G Sbjct: 226 E-----VGGNNLKLVGDAYTYGIAGTPYKVNHENNG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 70.5 bits (172), Expect = 2e-16 Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 2/180 (1%) Query: 7 KVIIITGASEGIGRALALALAPHGCKLVISARNLERLNSLAKELAELGTAPLVHVADVSK 66 K+ ITGA++GIG A+A LA G + N E+L + L ADV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 67 QTECAGLILACVSHFGKLDILVNNAGMTMWSRFDKLEDLSVLSQIMQVNYLGPAYLTHAA 126 + G +DILVN AG+ L D VN G + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEW-EATFSVNSTGVFNASRSV 127 Query: 127 IPYLK-QTQGQIVAVASLTGMTGVPTRSGYAASKHAVIGLFDSLRIELSNDNVAVTVICP 185 Y+ + G IV V S + + YA+SK A + L +EL+ N+ ++ P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 56.8 bits (137), Expect = 1e-10 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 18/144 (12%) Query: 8 HVDHGKTSLIQALT---------------GTDADRLPEEKQRGMTIELGYAFMDLSDGER 52 HVD GKT+L ++L T D E+QRG+TI+ G + + Sbjct: 11 HVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTK 69 Query: 53 LAFVDVPGHSKFINTMLAGVSCAKHALLIIACDDGVMPQTYEHLAILQLLNLEHLIVVLT 112 + +D PGH F+ + +S A+L+I+ DGV QT L+ + + + + Sbjct: 70 VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI-N 128 Query: 113 KQDKVDATRVDEVKEQVSELLAQH 136 K D+ + V + + E L+ Sbjct: 129 KIDQNGI-DLSTVYQDIKEKLSAE 151
>PF01206#SirA family protein Length = 76 Score = 91.7 bits (228), Expect = 1e-28 Identities = 19/71 (26%), Positives = 38/71 (53%) Query: 8 DYNLEIYGEPCPYPAVATLEAMQSLKAGEVLEVITDCSQSINNIPNDAKNHGYEVLDISQ 67 D +L+ G CP P + + + ++ AGEVL V+ S+ + + +K G+E+L+ + Sbjct: 5 DQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKE 64 Query: 68 QGVMLRYLLKK 78 + + LK+ Sbjct: 65 EDGTYHFRLKR 75
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 31.7 bits (72), Expect = 8e-04 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 12/63 (19%) Query: 5 SLSFSELSLNELYDLLKLRVDVFV--------VEQNCPYPELDDKDRQSQTQHLLGLNEQ 56 ++ + LS + +L LR + F E D D + T +L G+ + Sbjct: 6 DVNHTLLSETKSGELFTLRKETFKDRLNWAVQCTDGM---EFDQYDN-NNTTYLFGIKDN 61 Query: 57 GVI 59 VI Sbjct: 62 TVI 64
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 153 bits (389), Expect = 3e-48 Identities = 86/234 (36%), Positives = 132/234 (56%), Gaps = 9/234 (3%) Query: 6 KSVLAVVSCLTLSVSASCFANSDLTTDVEKESYSIGASFGHHISSQVYGQTQLGAEVDMG 65 K V A + L +S + + + LTTD +K SYSIGA G + +Q G +++ Sbjct: 4 KLVTAAIMGLAMSTAMAATDATSLTTDKDKLSYSIGADLGKNFKNQ-------GIDINPD 56 Query: 66 QVVNGLLDALQ-DETKMSKEEIVTYLNQRAETLNAAKQVKLDALTAKNLAAGEAFMAENA 124 + G+ D + + +++E++ L++ + L A + + + +N A G+AF++ N Sbjct: 57 VLAKGMQDGMSGAQLILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANK 116 Query: 125 KNSGVKQTESGLQYEVITLGEGTMPQGNDVVTVHYKGTLIDGTEFDSTYDRDEPNRFSLV 184 G+ SGLQY++I G G P +D VTV Y GTLIDGT FDST +P F + Sbjct: 117 SKPGIVVLPSGLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVS 176 Query: 185 TVIEGWQEALALMPQGSKFKLTIPPALAYGDRVV-GMIQPHSTLVFEVELVKVE 237 VI GW EAL LMP GS +++ +P LAYG R V G I P+ TL+F++ L+ V+ Sbjct: 177 QVIPGWTEALQLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVK 230
>PF06340#Vibrio cholerae toxin co-regulated pilus biosynthesis protein F (TcpF) Length = 338 Score = 26.5 bits (58), Expect = 0.044 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 38 GIKGEGHSPNYLIKNINGEKKAYKGLSHTLDPEG------DYNPNNLSQQGFS 84 G+ G N + I K Y+G L P G +Y+ + LS+ G++ Sbjct: 192 GLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSKHGYT 244
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 26.0 bits (57), Expect = 0.019 Identities = 7/24 (29%), Positives = 10/24 (41%) Query: 31 ADKATFDRFKQLAGSMTKQVMKEL 54 K DR K + + K VM + Sbjct: 289 YAKDKSDRLKSKSSDLQKIVMNNI 312
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 28.8 bits (64), Expect = 0.049 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 4/76 (5%) Query: 119 KNALMNVTIPHSVTHIGDWAFINNALTSVTVPNSVTYIGFRAFKNNELASVSIPNSVTYM 178 NA I + THIG +A ++ P Y K N+ S + N+ Sbjct: 295 HNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGY----KDKPNDKPSNTTQNNAKND 350 Query: 179 GKESFSNNALTSITIP 194 +ES NN+ T + P Sbjct: 351 KQESSQNNSNTQVINP 366
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 56.6 bits (136), Expect = 7e-12 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 10/184 (5%) Query: 2 ILISGASSGLGAALAKRYGAEQPICISGRNSERLQLVAKEVSQPCQAQVT-----DLCDA 56 I+GA+ G+G A+A+ A Q I+ + +L S +A+ D+ D+ Sbjct: 11 AFITGAAQGIGEAVARTL-ASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 57 SAVESLFDNLPTTPS---LIIHSAGSGYFGPIESQSPEAIKDLLNNNVTSAIFLLREAVK 113 +A++ + + ++++ AG G I S S E + + N T R K Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 114 RYKEQNV-TVVIVMSTAALVPKAEESTYCAAKWAVKGLIESVRLELKNSPMKLIAVYPGG 172 ++ ++V V S A VP+ + Y ++K A + + LEL ++ V PG Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 173 MDTD 176 +TD Sbjct: 190 TETD 193
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 27.1 bits (60), Expect = 0.031 Identities = 5/26 (19%), Positives = 16/26 (61%) Query: 125 KSGVISAILVEDGQQVDFEQAILEIE 150 ++ ++ I+V++G+ V +L++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLT 128
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.8 bits (119), Expect = 1e-08 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 9/138 (6%) Query: 204 AVAQAQADYINAAAEWSRVKRMSASAVSASRRLQA---QVDAELKRAILEAMKMTPAQIK 260 AV + + Y+ A E K S + V K IL+ ++ T I Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIG 312 Query: 261 A----LANAPETIGSYQLIAPINGRVQQ-DIALLGQIVPAGTALMQLT-DESHLWVEAEL 314 LA E + + AP++ +VQQ + G +V LM + ++ L V A + Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALV 372 Query: 315 TPTQAEKVSLGSKTVVKV 332 +++G ++KV Sbjct: 373 QNKDIGFINVGQNAIIKV 390 Score = 38.7 bits (90), Expect = 4e-05 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 5/140 (3%) Query: 157 VATATIVVDRDRTVTIAPQVDVRVLKRNVVPGQEVAQGDVLLTLGGV----AVAQAQADY 212 A + R+ I P + V + V G+ V +GDVLL L + + Q+ Sbjct: 85 TANGKLTHS-GRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSL 143 Query: 213 INAAAEWSRVKRMSASAVSASRRLQAQVDAELKRAILEAMKMTPAQIKALANAPETIGSY 272 + A E +R + +S S D + + E + + + Y Sbjct: 144 LQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKY 203 Query: 273 QLIAPINGRVQQDIALLGQI 292 Q ++ + + + +L +I Sbjct: 204 QKELNLDKKRAERLTVLARI 223
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 654 bits (1688), Expect = 0.0 Identities = 221/1091 (20%), Positives = 437/1091 (40%), Gaps = 85/1091 (7%) Query: 5 LIDVAIRNRLLVILALIGAIIASAAMLPKLNLDAFPDVTNVQVTVNTAAEGLAAEEVEKL 64 + + IR + + I ++A A + +L + +P + V+V+ G A+ V+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 ISYPVESAMYALPAVTEVRSLS-RTGLSIVTVVFAEGTDIYFARQQVFEQLQAAREMIPD 123 ++ +E M + + + S S G +T+ F GTD A+ QV +LQ A ++P Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GVGVPEIGPNTSGLGQIYQYILRATPESGVNAAELRSINDYMVKLIMMPVGGVTEVLSFG 183 V I S + + ++ VK + + GV +V FG Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPG-TTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 184 GEVRQYQVQIEPNKLLSYGLSMAQVTSALESNNRNAGGWFMDQGQE------QLVVRGYG 237 + ++ ++ + L Y L+ V + L+ N + + Sbjct: 180 AQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 238 MLPSGDAGLKAIAQIPLTEVA-GTPVRVGDIAKVDYGSEIRVGAVTMTRRDEAGNAQDLG 296 + + ++ L + G+ VR+ D+A+V+ G E + N + Sbjct: 239 RFKN----PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARI-------NGK--- 284 Query: 297 EVVAGVVLKRMGANTKETIDDISARTAMIEQALPDGVSFEVFYDQSDLVNQAVTTVRDAL 356 + GAN +T I A+ A ++ P G+ YD + V ++ V L Sbjct: 285 PAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTL 344 Query: 357 LMAFVFIVVILALFLVNIRATMLVLLSIPVSIGLALLVMSYFGMSANLMSLGGLAVAIGM 416 A + + +++ LFL N+RAT++ +++PV + +++ FG S N +++ G+ +AIG+ Sbjct: 345 FEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGL 404 Query: 417 LVDGSVVMVENIFKHLTQPDRRHLANAQKRASGEDDPYHADEDGTSTASHDESSAGIAMR 476 LVD ++V+VEN+ + + + P A Sbjct: 405 LVDDAIVVVENVERVM--------------MEDKLPPKEA-------------------- 430 Query: 477 IMLAAKEVCSPIFFATAIIIVVFAPLFALEGVEGKLFQPMAVSIILAMISALLVALIAVP 536 + ++ + ++ VF P+ G G +++ +++I+ AM ++LVALI P Sbjct: 431 TEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTP 490 Query: 537 ALAVYLFK----------RGVVLRESAVLKPIESVYRKLLSSTMAHPKVVGITAVVMFAM 586 AL L K G + + Y + + + ++ A Sbjct: 491 ALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAG 550 Query: 587 SMMLLPRLGTEFVPELEEGTINLRVTLAPTASLATSLDVAPKLEALLLDFPEVDYALSRI 646 ++L RL + F+PE ++G + L A+ + V ++ L + + S Sbjct: 551 MVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVE-SVF 609 Query: 647 GAAELGGDPEPVNNIEIYIGLKPVDEWVSASNRFE--LQRKMEEKLNVYPGLLFTFSQPI 704 + N ++ LKP +E N E + R E + G + F+ P Sbjct: 610 TVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMP- 668 Query: 705 ATRVDELLSGVKAQLA-IKIFGPDLDVLSERGQVLTELVSQIPGAV-DVSLEQVSGEAQL 762 + EL + I G D L++ L + +Q P ++ V + AQ Sbjct: 669 --AIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQF 726 Query: 763 VVRPKRDQLARYGISVDEIMALVSQGVGGASAGQVIDGNARYDIYVRLAEQYRSSPDILE 822 + +++ G+S+ +I +S +GG ID +YV+ ++R P+ ++ Sbjct: 727 KLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVD 786 Query: 823 DLLLTGVSGATVRLGEVADVVIEMAPPNIRRDDVQRRVVVQANVADRDMGSVVNDIYAIV 882 L + +G V P + R + + +Q A G+ D A++ Sbjct: 787 KLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALM 843 Query: 883 PQA--ELPPGYTVVVGGQYENQQRAQQKLMLVVPVSIALIALLLYFSFGSVKQVGLIMAN 940 +LP G G ++ + + +V +S ++ L L + S +M Sbjct: 844 ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLV 903 Query: 941 VPLALIGGVVALFASGTYLSVPSSIGFITLFGVAVLNGVVLVDSINQRRSSVKEETDESL 1000 VPL ++G ++A V +G +T G++ N +++V+ E+ + + Sbjct: 904 VPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDL----MEKEGKGV 959 Query: 1001 YDAVYEGTVGRLRPVLMTALTSALGLIPILLSSGVGSEIQQPLAVVIIGGLFSSTALTLL 1060 +A RLRP+LMT+L LG++P+ +S+G GS Q + + ++GG+ S+T L + Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1061 VLPTLYRWIYQ 1071 +P + I + Sbjct: 1020 FVPVFFVVIRR 1030 Score = 106 bits (265), Expect = 3e-25 Identities = 79/552 (14%), Positives = 176/552 (31%), Gaps = 70/552 (12%) Query: 10 IRNRLLVILALIGAIIASAAMLPKLNLDAFPDVTNVQVTVN-TAAEGLAAEEVEKLI--- 65 + + +L + + +L P+ G E +K++ Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593 Query: 66 -SYPVESAMYALPAVTEVRSLSRTGLS----IVTVVFAEGTDIYFARQQVFEQLQAAREM 120 Y +++ + +V V S +G + + V + + A+ Sbjct: 594 TDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKME 653 Query: 121 ---IPDGVGVPEIGPNTSGLGQIYQYILRATPESGVNAAELRSINDYMVKLIMMPVGGVT 177 I DG +P P LG + ++G+ L + ++ + + Sbjct: 654 LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLV 713 Query: 178 EVLSFGGEVRQYQVQIEPN--KLLSYGLSMAQVTSALES--NNRNAGGWFMDQGQEQLVV 233 V G Q ++E + K + G+S++ + + + + ++L V Sbjct: 714 SVRP-NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYV 772 Query: 234 RGYGMLPSGDAGLKAIAQIPLTEVAGTPVRVGDIAKVDYGSEIRVGAVTMTRRDEAGNAQ 293 + + + ++ + G V + G+ + R + + + Sbjct: 773 QADAKFRML---PEDVDKLYVRSANGEMVPFSAFTTSHWVY----GSPRLERYNGLPSME 825 Query: 294 DLGEVVAGVVLKRMGANTKETIDDISARTAMIEQALPDGVSFEVFYDQSDLVNQAVTTVR 353 GE G D A + LP G+ ++ + S + Sbjct: 826 IQGEAAPGTSS-----------GDAMALMENLASKLPAGIGYD-WTGMSYQERLSGNQAP 873 Query: 354 DALLMAFVFIVVILALFLVNIRATMLVLLSIPVSIGLALLVMSYFGMSANLMSLGGLAVA 413 + ++FV + + LA + + V+L +P+ I LL + F ++ + GL Sbjct: 874 ALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTT 933 Query: 414 IGMLVDGSVVMVENIFKHLTQPDRRHLANAQKRASGEDDPYHADEDGTSTASHDESSAGI 473 IG+ ++++VE A G+ G+ Sbjct: 934 IGLSAKNAILIVE-------------FAKDLMEKEGK---------------------GV 959 Query: 474 AMRIMLAAKEVCSPIFFATAIIIVVFAPLFALEGVEGKLFQPMAVSIILAMISALLVALI 533 ++A + PI + I+ PL G + + ++ M+SA L+A+ Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 534 AVPALAVYLFKR 545 VP V + + Sbjct: 1020 FVPVFFVVIRRC 1031 Score = 90.3 bits (224), Expect = 2e-20 Identities = 87/480 (18%), Positives = 175/480 (36%), Gaps = 54/480 (11%) Query: 636 FPEVDYALSRIGAAELGGDPEPV-NNIEIYI-----GLKPVDEWVSASNR---------F 680 +P + + A G D + V + + I G+ + S S+ F Sbjct: 35 YPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTF 94 Query: 681 EL-------QRKMEEKLNVYPGLLFTFSQPIATRVDELLSGVKAQLAIKIFGPDLDVLSE 733 + Q +++ KL + LL Q V++ S P Sbjct: 95 QSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDI 154 Query: 734 RGQVLTEL---VSQIPGAVDVSLEQVSGEAQLVVRPKRDQLARYGISVDEIM-ALVSQ-- 787 V + + +S++ G DV L + + + D L +Y ++ +++ L Q Sbjct: 155 SDYVASNVKDTLSRLNGVGDVQL--FGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQND 212 Query: 788 --GVGGASAGQVIDGNARYDIYVRLAEQYRSSPDILEDLLLTGVSGATVRLGEVADVVIE 845 G + G + + + ++++ + + L G+ VRL +VA V + Sbjct: 213 QIAAGQLGGTPALPGQ-QLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG 271 Query: 846 MAPPNIR-RDDVQRRVVVQANVA-DRDMGSVVNDIYAIVP--QAELPPGYTVVVGGQYEN 901 N+ R + + + +A + I A + Q P G V+ Y+ Sbjct: 272 GENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLY--PYDT 329 Query: 902 QQRAQQKLMLVVP---VSIALIALLLYFSFGSVKQVGLIMANVPLALIGGVVALFASGTY 958 Q + VV +I L+ L++Y +++ + VP+ L+G L A G Sbjct: 330 TPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGY- 388 Query: 959 LSVPSSIGFITLFGVAVLNGVVLVDSI----NQRRSSVKEETDESLYDAVYEGTVGRLRP 1014 SI +T+FG+ + G+++ D+I N R V E +A + Sbjct: 389 -----SINTLTMFGMVLAIGLLVDDAIVVVENVER--VMMEDKLPPKEATEKSMSQIQGA 441 Query: 1015 VLMTALTSALGLIPILLSSGVGSEIQQPLAVVIIGGLFSSTALTLLVLPTLYRWIYQGRK 1074 ++ A+ + IP+ G I + ++ I+ + S + L++ P L + + Sbjct: 442 LVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVS 501
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 30.6 bits (69), Expect = 0.008 Identities = 10/37 (27%), Positives = 21/37 (56%) Query: 354 GCFDILHAGHVSYLQQARALGDRLIVAVNTDASVKRL 390 G FD + GH+ +++ L D++ VAV + + + + Sbjct: 7 GSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPM 43
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.6 bits (123), Expect = 1e-10 Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 1 MAKRSKIQTEQTVQQILDEAMKQILDIGYEAMSYSTLSQATGISRTGISHHFPYKVDFLK 60 MA+++K + ++T Q ILD A++ G + S +++A G++R I HF K D Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 QL 62 ++ Sbjct: 61 EI 62
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.7 bits (90), Expect = 2e-05 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 2/81 (2%) Query: 190 GRVLWVDDHPENNLVEKAYLEQKNIGVYNTVTSEEALMLLSMYHYQAVISDMGRHGDSLA 249 +L DD V L + V T + ++ V++D+ ++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN-- 61 Query: 250 GLKLLQAIRAKGNKTPFYLYT 270 LL I+ P + + Sbjct: 62 AFDLLPRIKKARPDLPVLVMS 82
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 30.5 bits (69), Expect = 0.004 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 10/99 (10%) Query: 7 TAVITATL---TIAGCAQQQESTEPQNFLTNDGNVNILWQNPSDYSDIEATTGVQSKFEQ 63 +A+++ +L + G + E + + + DG I+ NP++ +++A ++ FE Sbjct: 191 SAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTE-EEVKAYEEKRAAFE- 248 Query: 64 YLFTELTDELAKLANKH-LTKDQQLDLTVTNVDLAGDVQ 101 + E AKL + TKD N+ DV Sbjct: 249 ----KQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVD 283
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.1 bits (65), Expect = 0.005 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 12/62 (19%) Query: 70 QLAILTGMLVHPDFRGQGVGHRLM---------RELESVLCDGNTYIFALAHLEQFYAQH 120 A++ + V D+R +GVG L+ ++ + + H FYA+H Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACH---FYAKH 144 Query: 121 GF 122 F Sbjct: 145 HF 146
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 31.7 bits (72), Expect = 0.002 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 23/154 (14%) Query: 22 GNFDGVHRGHAEVINRLVKKAEHLGLPAAVMTFEPQPRELFQGESAPARLSLLRDKIVLL 81 G+FD + GH ++I R + + + + P + +F + RL + I L Sbjct: 7 GSFDPITFGHLDIIERGCRLFDQVYVAVLR---NPNKQPMFSVQE---RLEQIAKAIAHL 60 Query: 82 DELKIDRLLCVNFNNKFSSYSAEDFIEQLLVKALGVKYLVVGDDFCFGKQRQGNFDMLRK 141 ++D F + ++ Q A+ ++ L V DF Q L Sbjct: 61 PNAQVDS---------FEGLTV-NYARQRQAGAI-LRGLRVLSDFELELQMANTNKTLAS 109 Query: 142 AGEKFGFAVVSTQSFILGDKRVSSTEIRKLLAKG 175 E + SF+ SS+ ++++ G Sbjct: 110 DLETVFLTTSTEYSFL------SSSLVKEVARFG 137
>PilS_PF08805#PilS N terminal Length = 185 Score = 27.6 bits (61), Expect = 0.027 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 9/71 (12%) Query: 5 EKGLSLIEVLVALVILTVGLIGVFNLHVISKRGSFESFQQTQAAYLANDIISRIKLNRSQ 64 +KG +L+EVL+ + ++ V + L+ + Q + +I+ +K + Q Sbjct: 25 DKGATLMEVLLVVGVIVVLAASAYKLY----SMVQSNIQSSNEQNNVLTVIANMKSLKFQ 80 Query: 65 LTSYAGTYSGT 75 G Y+ + Sbjct: 81 -----GRYTDS 86
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 44.9 bits (106), Expect = 7e-09 Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 5 KGFTLIELMITVAIIGILASIAYPSYIDYILQAGRSDAKVILLEAANKQEQLYLDSRTY 63 +GFTL+E+M+ + IIG+LAS+ P+ + +A + A ++ N + LD+ Y Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHY 66
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.003 Identities = 19/161 (11%), Positives = 52/161 (32%), Gaps = 2/161 (1%) Query: 228 RNQLHILQDNDDGSVESLLNTSISQGQDLESYDPELASVLAMLNDALIQVQESSSEIERY 287 N+L L+ D+ +++ + + L + ++ + + + +E Sbjct: 162 LNKLPELKLPDEPYFQNVSEEEVLRLTSL--IKEQFSTWQNQKYQKELNLDKKRAERLTV 219 Query: 288 LDGLELDPEYFAHLEQRLSKTMQLARKHQVMPNELYTHHQSLLEELEDLGSDSDKLDDIR 347 L + + RL L K + + + +E + +L +L+ I Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 348 EQLNANREAYLQHARKLSQSRSRYAKELDKQVTQSIHELNM 388 ++ + +E Y + ++ + EL Sbjct: 280 SEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAK 320
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.1 bits (106), Expect = 1e-06 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 26/198 (13%) Query: 414 DKLNKVLNSQVMQLSASKYSLDINTLRQLLKSEETEQFSLLGLTVSLDELIPQHIQKTEQ 473 D LN L + L A KY L R L + E E+ TV + + + + Sbjct: 951 DHLNVSLVGNTVDLGAWKYKLRNVNGRYDLYNPEVEK---RNQTVDTTNITTPNNIQADV 1007 Query: 474 ELLEERQSLTEQIADLKGLVEA-------SKQGELAEKKKDQLERAVKKCEQDLTDYQQL 526 S E+IA + S+ E + Q + V+K EQD T+ Sbjct: 1008 P---SVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQ 1064 Query: 527 QKLRDKQAERS-----EQKEVFEQDLKAINT--------ELSNAEQKHKELTDQINEIAG 573 + K+A+ + + EV + + T E+K K T++ E+ Sbjct: 1065 NREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPK 1124 Query: 574 KLTKLIAANESVDNLKKQ 591 +++ E + ++ Q Sbjct: 1125 VTSQVSPKQEQSETVQPQ 1142
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 29.4 bits (66), Expect = 0.041 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 35/159 (22%) Query: 200 IKLAIIGKPNVGKSTLTNRIL----GEERVVVYDEPGTTRDSIYIPMERQGREYVLIDTA 255 I + ++ + GK+TLT +L + D+ T D+ + +R Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQR----------- 52 Query: 256 GVRRRSKVHETV---EKFSVIKT------LKAVEDSNVVL----LVIDAREGIAEQDLGL 302 G+ ++ + K ++I T L V S VL L+I A++G+ Q L Sbjct: 53 GITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRIL 112 Query: 303 LGFVLNAGRALVIAINKWD--GID-----QNIKDRVKTE 334 + G + INK D GID Q+IK+++ E Sbjct: 113 FHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAE 151
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 53.9 bits (129), Expect = 7e-13 Identities = 28/71 (39%), Positives = 45/71 (63%) Query: 40 FSQLLSQAVGNVSELQSNAANLATRLDMGDTTVTLSDTVIAREKSSVAFEATVQVRNKLV 99 F+ L A+ +S+ Q+ A A + +G+ V L+D + +K+SV+ + +QVRNKLV Sbjct: 33 FAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLV 92 Query: 100 EAYKEIMSMPV 110 AY+E+MSM V Sbjct: 93 AAYQEVMSMQV 103
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 301 bits (771), Expect = 3e-97 Identities = 156/563 (27%), Positives = 263/563 (46%), Gaps = 49/563 (8%) Query: 30 LGGVDMLRQLTMILALAICLAVAVFVMIWAQEPEYRPL-GQMSTAEMVQVLDALDKNQVK 88 L + ++ +I+A + +A+ V +++WA+ P+YR L +S + ++ L + + Sbjct: 16 LNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIP 75 Query: 89 YEIQGD--VVKVPEDKYQDVKMLLSREGLDNQEANNDFLNKDSGFGVSQRMEQARLKHSQ 146 Y ++VP DK ++++ L+++GL A L FG+SQ EQ + + Sbjct: 76 YRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRAL 135 Query: 147 EQNLARVIEELKSVTRAKVILALPRENVFARNRSKPSATVVVSTRRS-GLSQEEVDSIVD 205 E LAR IE L V A+V LA+P+ ++F R + PSA+V V+ L + ++ ++V Sbjct: 136 EGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVH 195 Query: 206 IVASAVHNLEPNKVTVTDANGRLLNSGTQDGASAIARRELEIVQQKESEYRTKVESILMP 265 +V+SAV L P VT+ D +G LL G +L+ ES + ++E+IL P Sbjct: 196 LVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDL-NDAQLKFANDVESRIQRRIEAILSP 254 Query: 266 ILGPENFTSQVDVSMDFTAVEQTAKRYNPDLPALRSEMVVENNS-----AGGTSGGIPGA 320 I+G N +QV +DF EQT + Y+P+ A ++ + + G GG+PGA Sbjct: 255 IVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGA 314 Query: 321 LSNQPP---------------MAADIPQEVNAEESLAVSSGTSHKEATRNFELNTTISHT 365 LSNQP A + PQ + S + ++ + T N+E++ TI HT Sbjct: 315 LSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHT 374 Query: 366 RQQVGTLRRVSVSVAVDFKNGPVSEDGSVNRVPRTEQELANIRRLLEGAVGFNTQRGDII 425 + VG + R+SV+V V++K + +P T ++ I L A+GF+ +RGD + Sbjct: 375 KMNVGDIERLSVAVVVNYKTLADGKP-----LPLTADQMKQIEDLTREAMGFSDKRGDTL 429 Query: 426 EVVSVPFMDQLIEDAPPQEMWEQPWFWRAVKLVLGALVVLV----LILAVVRPMLKRLVY 481 VV+ PF + W+Q F + L+VLV L VRP L R V Sbjct: 430 NVVNSPF-SAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRV- 487 Query: 482 PDSVKMPDEPQTGGELAEIEDQYAADTLGMLQRPEAEYSYADDGSILIPNLHKDDDMIKA 541 + K E + E + LQ+ A + + + M + Sbjct: 488 -EEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRA--------NQRLGA----EVMSQR 534 Query: 542 IRALVANEPELSTQVVKNWLLED 564 IR + N+P + V++ W+ D Sbjct: 535 IREMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 287 bits (735), Expect = 1e-97 Identities = 109/343 (31%), Positives = 191/343 (55%) Query: 7 VEAKPEAAALKTSDLSGIEKTAILLLSLSESDAASILKHLEPKQVQKVGMAMAAMQDFGQ 66 +E K E L S L+G +K AILL+S+ ++ + K+L ++++ + +A ++ Sbjct: 1 MEEKKEKEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITS 60 Query: 67 EKVIGVHKLFLDEIQKYSSIGFNSEEFVRKALTAALGEDKAGNLIEQIIMGGGAKGLDSL 126 E V F + + I ++ R+ L +LG KA ++I + ++ + + Sbjct: 61 ELKDNVLLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFV 120 Query: 127 KWMDARQVATIIQNEHPQIQTIVLSYLEPDQAAEIFGQFPENTRLDLMMRIANLEEVQPA 186 + D + IQ EHPQ ++LSYL+P +A+ I P + ++ RIA ++ P Sbjct: 121 RRADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPE 180 Query: 187 ALQELNDIMEKQFAGQGGAQAAKMGGLKAAANIMNYLDTGVESHLMETMRESDEEMAQQI 246 ++E+ ++EK+ A GG+ I+N D E ++E++ E D E+A++I Sbjct: 181 VVREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEI 240 Query: 247 QDLMFVFENLSEVDDMGIQVLLREVQQDVLIKALKGADDQLKEKLLSNMSKRAAELLRDD 306 + MFVFE++ +DD IQ +LRE+ L KALK D ++EK+ NMSKRAA +L++D Sbjct: 241 KKKMFVFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKED 300 Query: 307 LEAMGPIRISEVEVAQKEILSIARRLSDSGEIMLGGGGGEEFL 349 +E +GP R +VE +Q++I+S+ R+L + GEI++ GG E+ L Sbjct: 301 MEFLGPTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 76.8 bits (188), Expect = 1e-18 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 4/205 (1%) Query: 47 AEEQTEVESILPPTLSEIEDIRAHAEQEGFG---EGLEKGHSEGLEKGRLEGLEQGHSEG 103 A Q E I+ P + IE+ EQ+ + E+G+ G+ +GR +G +QG+ EG Sbjct: 16 APPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEG 75 Query: 104 FSQGQQQGYLEGLQAASEMLQRFESLLSQFEAPLSILDTEIEKELLNTSMVLAKAVIGHE 163 +QG +QG E + + R + L+S+F+ L LD+ I L+ ++ A+ VIG Sbjct: 76 LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQT 135 Query: 164 LKTYPEHILAALRQGVDSLPIKDQKINVRVTPSDEILISELYSQAQLERNRWEIEADPSL 223 ++ ++Q + P+ K +RV P D + ++ A L + W + DP+L Sbjct: 136 PTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLG-ATLSLHGWRLRGDPTL 194 Query: 224 TAGDCIIDCGRSHIDMTVETRIQSV 248 G C + +D +V TR Q + Sbjct: 195 HPGGCKVSADEGDLDASVATRWQEL 219
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 40.6 bits (94), Expect = 3e-07 Identities = 40/145 (27%), Positives = 70/145 (48%) Query: 1 MARADPLLMVLKLAEDAEEQASLQLRSAQLELQRRQNQLDALQNYRLDYMKQMEQQQGQS 60 MA L + LAE E A+ L + Q+ + QL L +Y+ +Y + Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60 Query: 61 ISASHYHQFHQFVRQIDTAIIQQVNTVQDADNQRQHRQVYWQEKQQKRKAVELLLANKAE 120 I+++ + + QF++ ++ AI Q + + W+EK+Q+ +A + L ++ Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120 Query: 121 KAQLAELRAEQKMVDEFASQQFYRK 145 A LAE R +QK +DEFA + RK Sbjct: 121 AALLAENRLDQKKMDEFAQRAAMRK 145
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 47.9 bits (113), Expect = 5e-08 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Query: 381 MNQQLITMVSNGIQQAEIRLDPPELGQMMVRIQVQGDTTQVQFQVSQHQTRDLVEQAMPR 440 ++Q + G Q AE+RL P +LG++ + ++V + Q+Q R +E A+P Sbjct: 244 LSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPV 303 Query: 441 LREMLAEQGMQLTDGQVSQGDGRNSQGEQGSGAGNGTATAETDEISSEE 489 LR LAE G+QL +S G+ + Q + S TA + ++ E+ Sbjct: 304 LRTQLAESGIQLGQSNIS-GESFSGQQQAASQQQQSQRTANHEPLAGED 351
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 249 bits (638), Expect = 5e-83 Identities = 87/326 (26%), Positives = 168/326 (51%), Gaps = 11/326 (3%) Query: 1 MSDLLSQDEIDALLHGVDDVEEDMID----DNELDARSYDFSSQDRIVRGRMPTLEIVNE 56 M+++LSQDEID LL + + + D + YDF D+ + +M TL +++E Sbjct: 1 MTEVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHE 60 Query: 57 RFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITME 116 FAR S+ +R V + V L + E++ ++ P++L ++ PLKG A++ ++ Sbjct: 61 TFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVD 120 Query: 117 ARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMEVQFDY 176 + F ++D FGG G+ R+ T E +++ ++ I + +E+W V++++ Sbjct: 121 PSITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRL 178 Query: 177 LDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYSMIEPIRELLDAG--VQSD 234 E NP A IV P+E+VV+ + +V G + +PY IEPI L + S Sbjct: 179 GQIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSV 238 Query: 235 TQDTDMRWSQALRDEIMDVDVGIDATIVEHKLTLREVLEFKAGDVIPVE---LPEHIILK 291 + + ++ LRD++ VD+ + A + +L++R++L + GD+I + + + +L Sbjct: 239 RRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLS 298 Query: 292 VEDLPTYRCKMGKAKDNLALKICEKI 317 + + + C+ G +A +I E+I Sbjct: 299 IGNRKKFLCQPGVVGKKIAAQILERI 324
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 113 bits (283), Expect = 2e-35 Identities = 57/119 (47%), Positives = 81/119 (68%) Query: 7 DDWAAAMAEQAIEEAKAVELDEFNSDGAPLSEEEASKLDAIMDIPVTISMEVGRSFINIR 66 D WA A+ EQ K+ F G +D IMDIPV +++E+GR+ + I+ Sbjct: 17 DLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIK 76 Query: 67 NLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKL 125 LL+L QGSVV LD +AGEPLD+++NG LIA GEVVVV DK+G+R+TD+I+ +ER+++L Sbjct: 77 ELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 28.2 bits (63), Expect = 0.008 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 10/88 (11%) Query: 21 EIYKELNTCRDFGLKDQITRAAVSIASNIAEGEERES------KAESARFLYFAKGSSGE 74 ++Y RDF D I A + + I + + + A A + + G+S Sbjct: 206 DVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSP 265 Query: 75 LATQIYIAIEIGVIEKQIGLKLIKEARE 102 + YI +E +G++ K Sbjct: 266 VELMDYIQA----LEDALGIEAKKNMLP 289
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 179 bits (455), Expect = 1e-55 Identities = 80/356 (22%), Positives = 142/356 (39%), Gaps = 48/356 (13%) Query: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVINVDKLT--YAGNL-ESLSSIESNERYVFEQV 57 MK LVTG AGFIG V + ++ V+ +D L Y +L ++ + + + F ++ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 58 DICDRAELDRVFAQCQPNAVMHLAAESHVDRSITGPADFIQTNIVGTYTLLEATRAYWNT 117 D+ DR + +FA V V S+ P + +N+ G +LE R Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN--- 116 Query: 118 LSKGAKQAFRFHHISTDEVYGDLPHPDEVESGKELPLFTETTAYEPSSPYSASKASSDHL 177 + + S+ VYG +P T+ + P S Y+A+K +++ + Sbjct: 117 ------KIQHLLYASSSSVYGLNRK---------MPFSTDDSVDHPVSLYAATKKANELM 161 Query: 178 VRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237 + YGLP YGP+ P+ + LEGK + +Y G RD+ Y++ Sbjct: 162 AHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYID 221 Query: 238 DHARALYKVV------------------TEGLVGETYNIGGHNEKQNLEVVQTICSILDF 279 D A A+ ++ YNIG + + ++ +Q + L Sbjct: 222 DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI 281 Query: 280 LVPKETKYSQQITYVTDRPGHDRRYAIDSSKMQRELGWTPVETFETGLRKTIEWYL 335 K + +PG + D+ + +G+TP T + G++ + WY Sbjct: 282 EAKKN--------MLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYR 329
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 39.0 bits (91), Expect = 9e-05 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%) Query: 918 MIPQADPGYDWLFGHEIGGLITKYGGANSHMAIRAAEIGLPAAIGVGE 965 Q + + + G T GG SH AI + + +PA +G E Sbjct: 168 DTAQLNKQF-------VKGFATDIGGRTSHSAIMSRSLEIPAVVGTKE 208
>PF07328#T-DNA border endonuclease VirD1 Length = 144 Score = 28.5 bits (63), Expect = 0.024 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 2/54 (3%) Query: 329 TSASLEP-SYVLRALGLNDEMAHSSIRFSIGRFT-TDEEIDHAIETIKESIGNL 380 T A L + LGLN A IG F D + + + +I + Sbjct: 28 TEAELAEFDAQIAELGLNRNRALRIAARRIGGFVENDAKTVELLRDMSRAIAGV 81
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 111 bits (278), Expect = 9e-29 Identities = 76/373 (20%), Positives = 137/373 (36%), Gaps = 72/373 (19%) Query: 22 VGIDLGTTNSLVAAVRSGVANTLPDEDSQHSLPSVVRYTQDS-------VLVGREAEAFS 74 + IDLGT N+L+ G+ + PSVV QD VG +A+ Sbjct: 13 LSIDLGTANTLIYVKGQGIV---------LNEPSVVAIRQDRAGSPKSVAAVGHDAKQML 63 Query: 75 AQDPQNTIVSIKRFMGRSLEDIQSGDQTLPYIFEASENGLPIFVTPSGKVNPVQISSEIL 134 + P N I +I+ + D ++ L + + +V+ Sbjct: 64 GRTPGN-IAAIRPMKDGVIADFFVTEKMLQHFIK--------------QVHSNSFMRPSP 108 Query: 135 KPLVARAELTLGGTLEGVVITVPAYFDDAQRQGTKDAASLTGVKVLRLLNEPTAAAIAYG 194 + V++ VP +R+ +++A G + + L+ EP AAAI G Sbjct: 109 R----------------VLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAG 152 Query: 195 LDSGQEGVIAVYDLGGGTFDISILRLNKGVFEVLATGGDSALGGDDFDHMLQAYFAEQWQ 254 L + V D+GGGT +++++ LN V +GGD FD + Y + Sbjct: 153 LPVSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYG 207 Query: 255 VSSASASMNR-KMQIEARRVKEALTESAETTASVVDDAGTKLTLTVTRELFDSL------ 307 A+ R K +I + + + E ++ + TL + E+ ++L Sbjct: 208 SLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN-SNEILEALQEPLTG 266 Query: 308 IAKLVKKTISSC----RRALRDAGVSNDEVLETVMVGGSTRVPLVRQEVESFMGKTPLTS 363 I V + C + + G+ V+ GG + + + + G + + Sbjct: 267 IVSAVMVALEQCPPELASDISERGM--------VLTGGGALLRNLDRLLMEETGIPVVVA 318 Query: 364 IDPDRVVAIGAAI 376 DP VA G Sbjct: 319 EDPLTCVARGGGK 331
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 502 bits (1293), Expect = e-180 Identities = 185/398 (46%), Positives = 265/398 (66%), Gaps = 8/398 (2%) Query: 6 VLVLNCGSSSLKFAVIDALTGDDQISGLAECFGLEDSRIKWKVNGQKSEASLGAFTAHRE 65 +LV+NCGSSSLK+ +I++ G+ GLAE G+ DS + NG+K + H++ Sbjct: 3 ILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKD-MKDHKD 61 Query: 66 AVEYIVNDILGAHPEIA---AEIQAIGHRVVHGGEKFTRSVIIDESVIHGIEDCATLAPL 122 A++ +++ ++ + + +EI A+GHRVVHGGE FT SV+I + V+ I DC LAPL Sbjct: 62 AIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAPL 121 Query: 123 HNPAHLIGIRAAQASFPALPQVAVFDTAFHQTMPEKAYIYALPYKLYRENAIRRYGMHGT 182 HNPA++ GI+A P +P VAVFDTAFHQTMP+ AY+Y +PY+ Y + IR+YG HGT Sbjct: 122 HNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGT 181 Query: 183 SHLFISREAAAALGKDEADTNIICAHLGNGASVTAIKGGKSVDTSMGLTPLEGLVMGTRC 242 SH ++S+ AA L K II HLGNG+S+ A+K GKS+DTSMG TPLEGL MGTR Sbjct: 182 SHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTRS 241 Query: 243 GDLDPSVIFHLVNRLGYTLDEVESVLNKQSGLLGISELTNDCRGIEEG-FGSGHKGATLA 301 G +DPS+I +L+ + + +EV ++LNK+SG+ GIS +++D R +E+ F +G K A LA Sbjct: 242 GSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQLA 301 Query: 302 LEIFCYRLAKYIASYTVPLERLDAVVFTGGIGENSDLIREKVLNSLAIFNFNVDKERNAA 361 L +F YR+ K I SY + +D +VFT GIGEN IRE +L+ L F +DKE+N Sbjct: 302 LNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKNKV 361 Query: 362 ARFGNGGQITTDEGTV-AMVIPTNEEWVIAQDAIELIK 398 G I+T + V MV+PTNEE++IA+D ++++ Sbjct: 362 R--GEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIVE 397
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 27.7 bits (61), Expect = 0.009 Identities = 12/28 (42%), Positives = 16/28 (57%) Query: 5 TNAASLGRSGVHDFILIRASAVVLACYT 32 T + LGR G+ D +LIR S + CY Sbjct: 161 TQRSLLGRIGIGDVLLIRTSRAEVYCYA 188
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 29.7 bits (66), Expect = 0.007 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Query: 130 GESEEYMRL---YKSFPEMKEHLESQ-YMLARESSSKLLGQ 166 G MRL Y FPE+KE +ESQ LAR KL + Sbjct: 146 GVDSSIMRLMSDYSRFPEVKELMESQMERLARPYWEKLRNR 186
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 31.4 bits (71), Expect = 6e-04 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 54 KQKEQALVDQQKDQTKKLLKRNENLERKLAEAKGKDD-KETIAMLMAHIHEL 104 K K L + + K+++ L L + + KD K +L A+I+ L Sbjct: 298 KSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYAL 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.9 bits (114), Expect = 2e-08 Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 18/130 (13%) Query: 180 MLGRKVLIVDDSATARRQVRETLEQLGLEVVEATDGLMALNQLKRWCDEGKVITDHILML 239 M G +L+ DD A R + + L + G +V ++ + ++ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA---------GDGDLV 51 Query: 240 ITDAEMPEMDGYKLTHEIRS-DKRMSDLFITLNTSLSGSFNNAMVE--KVGCDRFISK-F 295 +TD MP+ + + L I+ + L ++ + ++ + G ++ K F Sbjct: 52 VTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTF-----MTAIKASEKGAYDYLPKPF 106 Query: 296 QPDLLVEVVQ 305 L+ ++ Sbjct: 107 DLTELIGIIG 116
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 44.5 bits (105), Expect = 6e-07 Identities = 58/304 (19%), Positives = 112/304 (36%), Gaps = 23/304 (7%) Query: 43 AMATLAASFNTDITLVQQSLSLYLGGYALGMLCFGPLADRFGRKRLVLMGLTGFMLCSLA 102 ++ +A FN + ++ +++G +G L+D+ G KRL+L G+ S+ Sbjct: 36 SLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVI 95 Query: 103 LAFVTTIEAFLSI--RFLQAFIGAAA-----TVVVPGYIKELYGKNTAKGMSYVSLIMML 155 FV L I RF+Q GAAA VVV YI + +N K + I+ + Sbjct: 96 -GFVGHSFFSLLIMARFIQG-AGAAAFPALVMVVVARYIPK---ENRGKAFGLIGSIVAM 150 Query: 156 APLIAPSIGSLILELGDWHLIFFILAFYAFILLLLVGLKLKMPSDIDKSSRSTQSFFGAY 215 + P+IG +I W + I + L+ L K Sbjct: 151 GEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVG 210 Query: 216 ATVFTKKGVKLNIASGVLTSFAFFCYL-----TASPFVYMEVFGLDKSLFAILFSTNVGA 270 F +I+ +++ +F ++ PFV + + G Sbjct: 211 IVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLG----KNIPFMIGVLCGG 266 Query: 271 LMLANVVNSKIVGRYGSKRMLKVSTFFGVIAGIALLSVNLLGLSYHFTVIMLLPLMACLG 330 ++ V + Y K + ++ST I + + + + + + +L+ L Sbjct: 267 IIFGTVAGFVSMVPYMMKDVHQLSTA--EIGSVIIFPGTMSVIIFGYIGGILVDRRGPLY 324 Query: 331 VMSV 334 V+++ Sbjct: 325 VLNI 328
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 69.9 bits (171), Expect = 3e-14 Identities = 34/206 (16%), Positives = 84/206 (40%), Gaps = 9/206 (4%) Query: 566 ETIELVIDKVNKLQKELDNDKIQFKLASGPVGVMAATNEAVAEAQLPMMLYVYGAVFILC 625 +T + + K+ +LQ ++ + + V + + VF++ Sbjct: 301 DTAKAIKAKLAELQPFFPQG-MKVLYPYDTTPFVQLSIHEVVKT----LFEAIMLVFLVM 355 Query: 626 LISFRSLRATIAVILPLYVVSTLAQALMTQLDIGLAVSTLPVIALGVGIGVDYGIYILST 685 + +++RAT+ + + VV A++ + T+ + L +G+ VD I ++ Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 686 MA-VRLRDGMPVQKAYYEALVERGSAVIFTGLTLAIGVSTWFF---SALKFQMDMGILLT 741 + V + D +P ++A +++ + A++ + L+ F S I + Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 742 FMFLVNMLGAIIILPAIAAMFWRQPK 767 +++L A+I+ PA+ A + Sbjct: 476 SAMALSVLVALILTPALCATLLKPVS 501 Score = 44.8 bits (106), Expect = 1e-06 Identities = 26/146 (17%), Positives = 65/146 (44%), Gaps = 4/146 (2%) Query: 233 LIAILVTAVMVYFFSKSVALTILPLVCSLIAVVWQLGLLTVIGFGLDPMSILIPFLVFAI 292 AI++ +++Y F +++ T++P + + ++ +L G+ ++ +++ L + Sbjct: 345 FEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGL 404 Query: 293 GVSHSVQMI-NAVRRRVTDGQTTKAAAALAFRSLLIPGGVALLSDTIGFMTLLAID--IG 349 V ++ ++ N R + D K A + + + + F+ + G Sbjct: 405 LVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 350 II-RELAISASLGVAVIILTNLILLP 374 I R+ +I+ +A+ +L LIL P Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTP 490 Score = 37.5 bits (87), Expect = 2e-04 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 8/151 (5%) Query: 620 AVFILCLISFRSLRATIAVIL--PLYVVSTLAQALMTQLDIGLAVSTLPVIALGVGIGVD 677 VF+ + S ++V+L PL +V L A + + + ++ +G+ Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVY-FMVGLLTT-IGLSAK 939 Query: 678 YGIYILS-TMAVRLRDGMPVQKAYYEALVERGSAVIFTGLTLAIGVSTWFFSA---LKFQ 733 I I+ + ++G V +A A+ R ++ T L +GV S Q Sbjct: 940 NAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999 Query: 734 MDMGILLTFMFLVNMLGAIIILPAIAAMFWR 764 +GI + + L AI +P + R Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 29.4 bits (66), Expect = 0.008 Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 40/186 (21%) Query: 5 QLLFQVVTAGVFFVLAITFDLVREKIPNWLCLIAIFCGFLIN---SYFAQLNGLMLSFIG 61 L ++ V L DL + +P+ L L ++ G L N + + + ++ + G Sbjct: 133 GTLAALLLTWVLVALTFI-DLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAG 191 Query: 62 FSLAFIILFPTFMFKI------LGAGDIKLMMGIGALIGPQLLVWSIAYAIIAGAITSLL 115 + + + + + FK+ +G GD KL+ +GA +G Q L + + + GA + Sbjct: 192 YLVLWSL---YWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIG 248 Query: 116 LVIWKSGLSGCFKTVRRYWDCFYLRTYFKPEEGEAAGQRVPYAPALAIGWLWACSLNPDI 175 L++ + + +P+ P LAI A I Sbjct: 249 LILLR---------------------------NHHQSKPIPFGPYLAIAGWIALLWGDSI 281 Query: 176 TYLYST 181 T Y T Sbjct: 282 TRWYLT 287
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.018 Identities = 9/34 (26%), Positives = 17/34 (50%) Query: 159 KDLLFKIGPAMNSSRPVLIYGPPGTGKSYLCRHL 192 +++ + M + ++I G GTGK + R L Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 145 bits (367), Expect = 1e-39 Identities = 58/256 (22%), Positives = 113/256 (44%), Gaps = 23/256 (8%) Query: 176 QVMLEVVVAEVQRNVARQFDSKFFI--------FNQGSNLSGGLVGGGGGFDPGSIGG-- 225 QV++E ++AEVQ ++ N G +S + G G++ Sbjct: 346 QVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSL 405 Query: 226 IDAKGLFAQYINGDLMMNFALDIA--KQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIPV 283 A F G N+A+ + + +LA P++ + A F G E P+ Sbjct: 406 ASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLT 465 Query: 284 P-----GENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGFAISGNTST 338 G+N T+E + G+ +K P + + + L + VS ++ A +++ Sbjct: 466 GSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAAS------STS 519 Query: 339 TLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQ 398 + + + R+ V + G+T+ + GL+ ++ + DK+P LGD+PV+G LF S S + Sbjct: 520 SDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKK 579 Query: 399 SGQSELVILVTPRLVR 414 + L++ + P ++R Sbjct: 580 VSKRNLMLFIRPTVIR 595
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.043 Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 170 ALDGPSLSIRRFAVDKLNAGQLIEIGSVTEAMIELLKGGVKGKLNILVSGGTGSGKTTL 228 AL P + D + L+ + + + +L ++ L ++++G +G+GK + Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV 176
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 27.2 bits (60), Expect = 0.039 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 10/82 (12%) Query: 60 VVQAAPEEISHPSLEESSPKPIKVTKLAAKPVSDFSNLI-DADALAAQKGAVGRFLFILD 118 + A E+ H + P P + L+ +A + FL L+ Sbjct: 141 TLGAVLEQQEHTAALTDRPAA---------PDENLPPLLREALQIMDSDDGEQAFLHGLE 191 Query: 119 TVYRASTKQFEQVLQIQGRDRL 140 ++ R Q +LQI G D+L Sbjct: 192 SLIRGFEVQLTALLQIVGGDKL 213
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 114 bits (287), Expect = 3e-37 Identities = 32/89 (35%), Positives = 56/89 (62%), Gaps = 1/89 (1%) Query: 2 TKSELIEKLATRQSQLSAKEVEAAIKEMLEQMADTLETGDRIEIRGFGSFSLHYRAPRTG 61 K +LI K+A ++L+ K+ AA+ + ++ L G+++++ GFG+F + RA R G Sbjct: 3 NKQDLIAKVA-EATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGTSVELEGKYVPHFKPGKELRERV 90 RNP+TG ++++ VP FK GK L++ V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 106 bits (265), Expect = 1e-29 Identities = 78/257 (30%), Positives = 115/257 (44%), Gaps = 12/257 (4%) Query: 5 QGKNVVVVGGTSGINLAIAVHFSQAGANVAVASRSVEKVDAAVELLKQANPNGEHLGVCF 64 +GK + G GI A+A + GA++A + EK++ V LK + E Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA-- 64 Query: 65 DVRDLEALSKGFATISDAFSTIDVLVSGAAGNFPSTAEKLSENGFKSVMDIDLLGSFQVL 124 DVRD A+ + A I ID+LV+ A P LS+ +++ ++ G F Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 125 KQAYPLMSDT-GGAIIQISAPQAFVPMPMQVHVCAAKAGVDMLTKTLAIEWGRKGIRINS 183 + M D G+I+ + + A VP ++KA M TK L +E IR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 184 IVPGPIAGTEGFNRLAPSEELQAHVAQG--------VPLKRNGRCEDIANAALFLASDMA 235 + PG T+ L E V +G +PLK+ + DIA+A LFL S A Sbjct: 185 VSPGS-TETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 236 SYITGTVLPVDGGWSLG 252 +IT L VDGG +LG Sbjct: 244 GHITMHNLCVDGGATLG 260
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 95.7 bits (238), Expect = 2e-25 Identities = 33/148 (22%), Positives = 66/148 (44%) Query: 4 LYLVDDDQAVLDSLTWMLNGLGFQPQGFLSADSFLNQVNLHNEGIAVLDVQMPGMDGSAL 63 + + DDD A+ L L+ G+ + +A + + + + V DV MP + L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 LSLLTKAQSPIAVIMLSGHGNIAMAVQAIQRGALDFLEKPVDGDKLVVLLEQAKTQTKLN 123 L + KA+ + V+++S A++A ++GA D+L KP D +L+ ++ +A + K Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 124 MQRKLAREALSDKLEALTPREHEVMEKV 151 + L + E+ + Sbjct: 126 PSKLEDDSQDGMPLVGRSAAMQEIYRVL 153
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 59.4 bits (144), Expect = 5e-12 Identities = 68/353 (19%), Positives = 113/353 (32%), Gaps = 30/353 (8%) Query: 2 MKTIKLTLLAAAVLASPSVMADAYKFYGRIDYSVTHSDS----GSATHSGKSGTILENNW 57 MK + L AA+ + YG I V S S G+ S ++GT + + Sbjct: 1 MKKSLIALTLAALPVAAMADVT---LYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLG 57 Query: 58 SRLGVKGDAALNEEFTVFYQIEVGVNGASEGKSNNPFSARPTFLGIKHSTAGQLAAGRID 117 S++G KG L +Q+E + A +++ + R +F+G+K G+L GR++ Sbjct: 58 SKIGFKGQEDLGNGLKAIWQVEQKASIAG---TDSGWGNRQSFIGLK-GGFGKLRVGRLN 113 Query: 118 PVFKMAKGTADAMDMYSLKHDRLFAGDKRWGDSLEYKTVKWNKLQFGASYILEDNYYDED 177 V K A + S+ Y + ++ L Y L DN Sbjct: 114 SVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDN----- 168 Query: 178 DVRRDNGN-YQVALTYGDKLFKTGDLYLAAAYTDGVEDIKGFRAVAQYKIDKLMLGTIYQ 236 R N Y Y + F + E++ + + +Y Sbjct: 169 -AGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDNDALYA 227 Query: 237 SSEIVNPNLDNWQQRDGDG--FIVSAKYQIDKLTLKAQYGQDDSGTGKIAGRVYSQLGAA 294 S + + ++ V+A + + G Y+ Sbjct: 228 SVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDATNYNND--- 284 Query: 295 ATEVPEVSQWAIGAEYRLSKSTRVHTEIGQFDVKQYSD-FDDTIASVGFRIDF 346 Q +GAEY SK T G + F T VG R F Sbjct: 285 ------YDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVGLRHKF 331
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.012 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 5/52 (9%) Query: 228 LRDKAILQLGLQGGFRRSELAEVRIEHISFL-REKLKVRVPYSKSNQQGQRE 278 + +L FRR++ V+ +F K + R Y + Q R+ Sbjct: 639 IAGIVAYELSEMTAFRRADAEAVK----AFFSSRKDRYRGAYGRYVQDHPRQ 686
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 26.3 bits (58), Expect = 0.035 Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 18/126 (14%) Query: 1 MRRHILTLGLLLLPVSAMANIIV---DKTGVDEKDYVYDLHQCTEMSTQVEQKQTEGSAI 57 M++ ++ L L LPV+AMA++ + K GV+ V GS I Sbjct: 1 MKKSLIALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKI 60 Query: 58 GTAAKGAA-IGSAGKAI---------AGGSGSEGAKQGAAIGL--GVGVLSKGRERRNNK 105 G KG +G+ KAI AG G +Q + IGL G G L GR K Sbjct: 61 GF--KGQEDLGNGLKAIWQVEQKASIAGTDSGWGNRQ-SFIGLKGGFGKLRVGRLNSVLK 117 Query: 106 DTYAAE 111 DT Sbjct: 118 DTGDIN 123
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 69.7 bits (170), Expect = 2e-16 Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 8/191 (4%) Query: 3 KHALITGGNRGIGRAFVEHYLKAGWNVTAC-CRDPKRAVELSVLKSDYEQLKVMSLDVSL 61 K A ITG +GIG A G ++ A K +S LK++ + DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 62 SESIAILTKELAG--TPIDLLINNAGYYGPKGVEFGSCDAKEWGKVIEVNTIAPLMLTEA 119 S +I +T + PID+L+N AG P + S +EW VN+ + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIH--SLSDEEWEATFSVNSTGVFNASRS 126 Query: 120 LYQNLKLVGNPVVAFISSKVGSMEDNTSGGGYYYRSSKAALNSVVKSLSIDLKDDGIKCV 179 + + + + + + S + + Y SSKAA K L ++L + I+C Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAA---YASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 180 ALHPGWVLTAM 190 + PG T M Sbjct: 184 IVSPGSTETDM 194
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 60.3 bits (146), Expect = 5e-12 Identities = 37/194 (19%), Positives = 77/194 (39%), Gaps = 2/194 (1%) Query: 3 SLTSVKYYIFLAYLAVLSMLGFIATDMYLPAFKAIEDTMATSPSQVAMSLTFFLAGLALG 62 S +++++ L +L +LS + + + I + P+ T F+ ++G Sbjct: 6 SQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIG 65 Query: 63 QLLYGPLVERFGKRNSLILGLVLFAAASFSISVSDSILVFNI-SRFIQALGACSAGVIWQ 121 +YG L ++ G + L+ G+++ S V S I +RFIQ GA + + Sbjct: 66 TAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVM 125 Query: 122 AIVIEKYDAAKAQGVFSNIMPLVALSPALAPILGAFILQSLGWQSIFITLTGMAAVMILL 181 +V F I +VA+ + P +G I + W + + + + + Sbjct: 126 VVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPF 184 Query: 182 TVWFVPAETKAISH 195 + + E + H Sbjct: 185 LMKLLKKEVRIKGH 198
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 31.1 bits (70), Expect = 0.015 Identities = 11/32 (34%), Positives = 22/32 (68%) Query: 465 LKQSKVDIRLNTEASVELLSQLQPDEILLAVG 496 L S +D+ L TE ++ELL++++P ++ + G Sbjct: 74 LPDSVIDVGLRTEPNLELLTEMKPSFMVWSAG 105
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 142 bits (358), Expect = 1e-43 Identities = 77/252 (30%), Positives = 119/252 (47%), Gaps = 18/252 (7%) Query: 6 KVIFVTGAGQGMGLAMVKLFAEQGAKVAAIDINEAAAKKVAEQQSAESGTEVIGIGCDIS 65 K+ F+TGA QG+G A+ + A QGA +AA+D N +KV AE+ D+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE-AFPADVR 67 Query: 66 QSSSVRDAITEVVQRLGSIDVVINNAGIGSIDSFIDTPDENWHKVINVNLTGTFYCCREA 125 S+++ + + + +G ID+++N AG+ DE W +VN TG F R Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 126 ARVMKEQGSGCIINISSTAVMSGD-GPSHYCASKAGVIGLTRSIAKELAASGIRVNTIVP 184 ++ M ++ SG I+ + S + Y +SKA + T+ + ELA IR N + P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 185 GPTNTPMMADIPEEWTQQMIDA-------------IPLGRMGEPADIAKLASFIASDDAS 231 G T T M + W + IPL ++ +P+DIA F+ S A Sbjct: 188 GSTETDMQWSL---WADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 232 FITGQNLAVNGG 243 IT NL V+GG Sbjct: 245 HITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 68.2 bits (166), Expect = 1e-15 Identities = 61/259 (23%), Positives = 100/259 (38%), Gaps = 19/259 (7%) Query: 2 KACNSRTVIITGSGGGLGRAYALALAAEGANVVVNDIRADAAAAVVDEILTQGGQAIANS 61 K + ITG+ G+G A A LA++GA++ D + VV + + A A Sbjct: 4 KGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 62 DDITRMDTATNIVDAALEAFGEVHVLINNAGVLADRMFISLSEADWDKVMQVHLKGHFCL 121 D+ I G + +L+N AGVL + SLS+ +W+ V+ G F Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 122 ANILGRRWRDLAKAGQPVDARIINTSSGAGLQGSIGQSNYSAAKGGIASLTLVQAAELGR 181 + + + D I+ S + Y+++K T EL Sbjct: 124 SRSVSKYMMDRRSGS------IVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 182 YGVTVNALAPAA-RTSMTQSAMPD-----VVKKPEDGSFDLW-------APENVAPLVVW 228 Y + N ++P + T M S D V K +F P ++A V++ Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 229 LSSSESKHISGQILESQGG 247 L S ++ HI+ L GG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 94.0 bits (233), Expect = 4e-25 Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 13/245 (5%) Query: 14 LKGKSVLITAAAGAGIGFAAARRAAEEGCRALMISDIHPRRLDEAVTRLRAETGLEQVYG 73 ++GK IT AA GIG A AR A +G + D +P +L++ V+ L+AE + + Sbjct: 6 IEGKIAFITGAA-QGIGEAVARTLASQGAH-IAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 74 QICDVTNQQDVSTLVQLAESKLAGIDVLINNAGLGGQKNVVDMSDNEWSTVLDITLTGTF 133 DV + + + E ++ ID+L+N AG+ + +SD EW + TG F Sbjct: 64 --ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 134 RMIREILPHMQARGHGVIVNNASVLGWRAQKEQAHYAAAKAGVMALTRCSALEAAEHGVR 193 R + +M R G IV S + A YA++KA + T+C LE AE+ +R Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 194 INAVSPSIALHDFLKKASSEE---------LLNQLASKEAFGRAAEVWEVANVMMFLASD 244 N VSP D ++E L + + A+ ++A+ ++FL S Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 245 YSSYM 249 + ++ Sbjct: 242 QAGHI 246
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.5 bits (92), Expect = 2e-06 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 67 LWLAFDDNKKIVGHIDIRGHAENHTKHRVLLGMGVDRSVRRFGIGKQLINQMLEWVADEP 126 +L + +N +G I IR N + ++ + V + R+ G+G L+++ +EW + Sbjct: 67 AFLYYLENN-CIGRIKIR---SNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENH 122 Query: 127 LIEFIDLWVLSNNLAAQKLYISTGFQKCG 155 + L N++A Y F Sbjct: 123 FCG-LMLETQDINISACHFYAKHHFIIGA 150
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 84.3 bits (208), Expect = 1e-21 Identities = 71/248 (28%), Positives = 109/248 (43%), Gaps = 18/248 (7%) Query: 5 ALVTGAAKRIGLAIATQLHDDGYNVVLHYGQSIDDAQALCDTLNTKRADSAIIMQADLAN 64 A +TGAA+ IG A+A L G ++ + + A A AD+ + Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAA--VDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 SDAIDTLIAKINSAGIRLSVLINNASCFYPTPIGETSFIKAQQLLATNLIAPYLLAEKLS 124 S AID + A+I + +L+N A P I S + + + N + + +S Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 125 PLLEA-NNGCVINLLDIHGRRPLKDHGLYSISKAALEMATLSLAQELAP-NIRVNGVSPG 182 + +G ++ + P Y+ SKAA M T L ELA NIR N VSPG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 183 AI-------LWPEQSGEQ-----SQQAILSAIPLAKLGQVDDIARLISHLVS--APYISG 228 + LW +++G + S + + IPL KL + DIA + LVS A +I+ Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 229 QVIAVDGG 236 + VDGG Sbjct: 249 HNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 37.2 bits (86), Expect = 1e-04 Identities = 40/218 (18%), Positives = 90/218 (41%), Gaps = 13/218 (5%) Query: 4 RNRILLTWISFLSYALTGSLIIVTGIVMGDIAKFFNLPISSMSNTFTFLNTGVLISIFLN 63 R+ +L W+ LS+ + +V + + DIA FN P +S + T I + Sbjct: 11 RHNQILIWLCILSF-FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVY 69 Query: 64 VWLMEIIALKKQLIFGFILMVLAVLGLMFGHNLA-IFSASMFVLGVVSGITMSIGTYLIT 122 L + + +K+ L+FG I+ + GH+ + + F+ G + ++ ++ Sbjct: 70 GKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVA 129 Query: 123 RLYHGKQCGSRLLFTDSFFSMAGMIFPLISAALLAHSVAWYWVYAAIGMIYVAIFILALV 182 R + G S +M + P I + + I Y+ + + + Sbjct: 130 RYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHY----------IHWSYLLLIPMITI 179 Query: 183 CEFPVLIKSEEQQQAVKEKWGL-GILFLAIAALCYILG 219 P L+K +++ +K + + GI+ +++ + ++L Sbjct: 180 ITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLF 217
>cloacin#Cloacin signature. Length = 551 Score = 40.5 bits (94), Expect = 2e-05 Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 2/82 (2%) Query: 560 GNGGNGANDGKDGIGGQ--GGQGFLGANSEWVNGDPGVGSNGRGGNADDSFSASGGGGGG 617 G G G N G G GG LG +G N G S GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 618 GGYGGGGAGDDGAGAGGGSWSV 639 G GG G G+G GG +V Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAV 84 Score = 35.8 bits (82), Expect = 6e-04 Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 5/81 (6%) Query: 552 DGGSTDEWGNGGNGANDGKDGIGGQGGQGFLGANSEWVNGDPGVGSNGRGGNADDSFSAS 611 + G+ GN G G G G G+ N+ W G GS S + Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPW-----GGGSGSGIHWGGGSGHGN 64 Query: 612 GGGGGGGGYGGGGAGDDGAGA 632 GGG G G G G G+ A A Sbjct: 65 GGGNGNSGGGSGTGGNLSAVA 85
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 51.9 bits (124), Expect = 3e-11 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 3/96 (3%) Query: 31 DDVVFEPDTKFAAFAKDENGKVVGGIRAVAFWN-YCILELLWLSDETRGQGVGSKLMDAA 89 DV + + AAF +G I+ + WN Y ++E + ++ + R +GVG+ L+ A Sbjct: 55 MDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKA 114 Query: 90 ENFAKEKGFGYMRTETLSFQ--AKPFYEKRGYKVFG 123 +AKE F + ET A FY K + + Sbjct: 115 IEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>SECA#SecA protein signature. Length = 901 Score = 32.5 bits (74), Expect = 0.005 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 15/58 (25%) Query: 30 RGYEAVQRDPAIE-------LFIEMMTAPALEVIRQ------HVEENYEHFEDDELPD 74 RGY Q+DP E +F M+ + EVI + E E E + Sbjct: 792 RGYA--QKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQQRRME 847
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 32.0 bits (72), Expect = 0.009 Identities = 57/287 (19%), Positives = 108/287 (37%), Gaps = 51/287 (17%) Query: 214 AQIDKLESDRTAAEHAAVELTNKASLCRAKIELIAKDI---------------------- 251 AQ+ K ++++ A AA E KA R + KDI Sbjct: 60 AQLKKTQAEQAARAKAAAEAQAKAKANRDALTQRLKDIVNEALRHNASRTPSATELAHAN 119 Query: 252 ------EKTELDLSSRGGAWAQSREQEKAKQFELDAERKELEKTLRAEIEGDLPFALAPN 305 E L L+ + E + E + RKE+E+ +AE E L A A Sbjct: 120 NAAMQAEDERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIERE-KAETERQLKLAEAEE 178 Query: 306 AMQALLTQLE-----AEKKAKQADSFNSELKGFLTELEQKLSFSLSNSFVAIETIKECLN 360 A L++ A+KK A S ++ G + L +LS S+ ++T+ N Sbjct: 179 KRLAALSEEAKAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRN 238 Query: 361 D----RESQQVKTDIQLDLADREYDQIKAQINNQAPSSYKR----FDEARKRLAIVEEQL 412 + + ++ L+ R D ++ + +A +E +K++ E ++ Sbjct: 239 ELAQASAKYKELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRI 298 Query: 413 DSISINIARAPEQEQLETQLEALKELNSRRTAAIVEHRDTTEAAKRK 459 + I+ +I + +A+ ++++ R A I + E K+ Sbjct: 299 NRINADITQIQ---------KAISQVSNNRNAGIARVHEAEENLKKA 336
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 30.4 bits (68), Expect = 0.027 Identities = 16/64 (25%), Positives = 32/64 (50%) Query: 382 IESMAKIITQFASGQPFYLNNTIGETQDTAQIDTLWLQQYLQNQLMPKLAADSREAIVLK 441 +ES K +F + + + D ++I+T ++ +++N + P + D +A LK Sbjct: 102 VESSTKSFQKFGDQRYRIFTSWVSHQNDPSKINTRSIRNFMENIIQPPILDDKEKAEFLK 161 Query: 442 YAKQ 445 AKQ Sbjct: 162 SAKQ 165
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.0 bits (148), Expect = 9e-12 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Query: 682 SKKIVLVVEDNKVNQQVVSINLKKLNLPYLIANDGREALENYKRHIGGVSVILMDCMMPI 741 + +LV +D+ + V++ L + I ++ G +++ D +MP Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPD 59 Query: 742 MDGFEATRAIRIFEKEEGEPRVTIIALTASILDDDIQKCFESGMDDYLPKPFKRDVLVRK 801 + F+ I+ + P + ++ ++A K E G DYLPKPF L+ Sbjct: 60 ENAFDLLPRIK-----KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 802 LAK 804 + + Sbjct: 115 IGR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.003 Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 17/131 (12%) Query: 34 DGHLLVEGPPGLAKT---RAVKALCDGVEGDFHRIQ---FTPDLLPADLTG------TDI 81 D L++ G G K RA+ G F I DL+ ++L G T Sbjct: 160 DLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGA 219 Query: 82 YRAQTATFEFEAGPIFHNLILADEINRAPAKVQSALLEAMAEGQVT-VGKHSYQLPELFL 140 T FE G + DEI P Q+ LL + +G+ T VG + ++ + Sbjct: 220 QTRSTGRFEQAEG----GTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRI 275 Query: 141 VMATQNPLENE 151 V AT L+ Sbjct: 276 VAATNKDLKQS 286
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.015 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%) Query: 43 LAIVGEAGSGKSTIARILVGAEIRSGGEIFFEGEPLDKHDLKQRCRLIRM 92 + + G G GKST+ LVG + S G D ++ + Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI-GTGKDSYEQIAGIVAYEL 647
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 117 bits (295), Expect = 2e-38 Identities = 50/88 (56%), Positives = 67/88 (76%) Query: 2 NKSELIEKIASGADISKAAAGRALDSFIGAVTEGLKEGDKIALVGFGTFEVRQRAERTGR 61 NK +LI K+A +++K + A+D+ AV+ L +G+K+ L+GFG FEVR+RA R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKEIKIAAANIPAFKAGKALKDAV 89 NPQTG+EIKI A+ +PAFKAGKALKDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.8 bits (80), Expect = 0.001 Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 26/152 (17%) Query: 304 HKRSKIKRDLAKAQDVLD--TDHFGLEKVKERILEYLAVQSRVKQLKGPILCLVGPPGVG 361 + + + +QD + ++++ + +R+ Q ++ + G G G Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL-------ARLMQTDLTLM-ITGESGTG 172 Query: 362 KTSLGQSIAKATGRK---YVRVALGGVRD---EAEIRGHRRTYIGSMPGKVIQKMSKVGV 415 K + +++ R+ +V + + + E+E+ GH + G+ G + + Sbjct: 173 KELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEK---GAFTGAQTRSTGRFEQ 229 Query: 416 KN--PLFLLDEIDKMSSDMRGDPASALLEVLD 445 LFL DEI M D + + LL VL Sbjct: 230 AEGGTLFL-DEIGDMPMDAQ----TRLLRVLQ 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.013 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 13/74 (17%) Query: 60 QDQDKLPTPHELRAHLDDYVIGQDKAKKVLAVAVYNHYKRLRNASPKDGVELGKSNILLI 119 + + P+ E + ++G+ A + + Y+ L D +++ Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEI-------YRVLARLMQTD------LTLMIT 166 Query: 120 GPTGSGKTLLAETL 133 G +G+GK L+A L Sbjct: 167 GESGTGKELVARAL 180
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (267), Expect = 4e-30 Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 22/263 (8%) Query: 3 LKDKVVVITGGAGGLGYAMAENLAAAGAKLALIDVDQEKLEKACANLGASTEVQ-GYAVD 61 ++ K+ ITG A G+G A+A LA+ GA +A +D + EKLEK ++L A + D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 62 ITDEEDVFATFQFIKEDFGQVNVLINNAGILRDGLLLKAKEGQVFERMSFDQFQSVINVN 121 + D + I+ + G +++L+N AG+LR GL+ +S +++++ +VN Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLI---------HSLSDEEWEATFSVN 116 Query: 122 LTGSFLCGREAAAAMIETGQEGVIINISSLAKAGNVGQTNYAASKAGVAAMSVGWAKELA 181 TG F R + M++ ++ S+ A YA+SKA + ELA Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 182 RYNIRSAAVAPGVIETEMTAAMKPE----------ALERLEKMVPVGRLGQAEEIASTVR 231 YNIR V+PG ET+M ++ + +LE + +P+ +L + +IA V Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 232 FIIEND--YVNGRVFEIDGGIRL 252 F++ ++ +DGG L Sbjct: 237 FLVSGQAGHITMHNLCVDGGATL 259
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 29.8 bits (67), Expect = 0.010 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 110 LADDVAQIVHHDIAETGNAETVLLIGHAFGNRVMRATASKYP----DIAKGVVLIAAGGQ 165 + D I+ AE G + V+LIG++FG V+ ++ P G VL++ Sbjct: 99 VTQDTLAIIDKYQAEFG-TQKVILIGYSFGAEVIPFVLNEMPARYRKNVLGAVLLSPSQS 157 Query: 166 REVE 169 + E Sbjct: 158 SDFE 161
>ENTEROVIROMP#Enterobacterial virulence outer membrane protein signature. Length = 171 Score = 33.3 bits (76), Expect = 0.002 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 17/121 (14%) Query: 430 SFNAGVGYGTESGLSLQFGVQQSNFLGTGNQA-GVNLNTNKYSKNVNINYTDPYFTKDGV 488 +F AG S ++ G QS+ G N+ G NL KY Y + + Sbjct: 15 AFTAGTSVAATSTVTG--GYAQSDAQGQMNKMGGFNL---KY------RYEE---DNSPL 60 Query: 489 SLGGSIYWSEFDADEANLEAYKNSSYGVSLNSGFPINEYNRING--GIGYRHNEISEISA 546 + GS ++E ++ + KN YG++ + IN++ I G G+GY + +E Sbjct: 61 GVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPT 120 Query: 547 Y 547 Y Sbjct: 121 Y 121
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.0 bits (75), Expect = 0.012 Identities = 19/93 (20%), Positives = 25/93 (26%), Gaps = 6/93 (6%) Query: 1201 PATPVQPAPVQTTAVQTAPTQAPQVKTAPVATTPQVQAPQVVRQAAPAQAAVV------P 1254 P P+ T V A + PQ P + + P +A VV Sbjct: 41 IELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 100 Query: 1255 TNTSPVAVISAETALSATLSSEKVQATMLEVVA 1287 P V E E A+ E A Sbjct: 101 PKPKPKPVKKVEQPKRDVKPVESRPASPFENTA 133 Score = 32.6 bits (74), Expect = 0.019 Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 11/133 (8%) Query: 1169 SPATYAPVIENKVIQTEVVQREVV---AQPAIIATPATPVQPAPVQTTAVQTAPTQAPQV 1225 PA P+ V ++ + V +P + P P P + AP + Sbjct: 43 LPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEP-----PKEAPVVIEKP 97 Query: 1226 KTAPVATTPQVQA-PQVVRQAAPAQ--AAVVPTNTSPVAVISAETALSATLSSEKVQATM 1282 K P V+ Q R P + A NT+P S+ + + V + Sbjct: 98 KPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGP 157 Query: 1283 LEVVAEKTGYPTE 1295 + + YP Sbjct: 158 RALSRNQPQYPAR 170
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 47.6 bits (113), Expect = 2e-09 Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 6 KGFTLIELVVVIIILGILAIVAIPKFINLQNDARMSAMAGQFGAFKSAVGLY 57 +GFTL+E++VVI+I+G+LA + +P + + A A ++A+ +Y Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMY 59
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 25.8 bits (56), Expect = 0.026 Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 9/54 (16%) Query: 8 WHQYIQWCDSM---------GLTPENRRSCAPRLTDPELKPAPKFKLAPELESA 52 W + + L RR A +DP P L L+ A Sbjct: 506 WSEVLPQIQETTARIIFNGKDLNLVERRIAAVNPSDPLETTKPDMTLKEALKIA 559
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 203 bits (519), Expect = 2e-60 Identities = 107/460 (23%), Positives = 209/460 (45%), Gaps = 45/460 (9%) Query: 10 KRRTFAIISHPDAGKTTITEKVLLFGNALQKAGTV-KGKKSGQHAKSDWMEMEKDRGISI 68 K +++H DAGKTT+TE +L A+ + G+V KG ++D +E+ RGI+I Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGT-----TRTDNTLLERQRGITI 56 Query: 69 TTSVMQFPYSDALVNLLDTPGHEDFSEDTYRTLTAVDSCLMVIDSAKGVEQRTIKLMEVT 128 T + F + + VN++DTPGH DF + YR+L+ +D +++I + GV+ +T L Sbjct: 57 QTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 129 RLRDTPIVTFMNKLDRDIRDPIELMDEVEEVLNIKCAPITWPIGAGKEFKGVYHLLRDEV 188 R P + F+NK+D++ D + +++E L+ + + +V Sbjct: 117 RKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVI------------------KQKV 158 Query: 189 ILYQGGMGHTIQDSRVIKGLDNPELDEAIGSYAAEIRDEMELVVGASHEFDHQQFLKGEL 248 LY +S + D+ + Y + E + + + +F L Sbjct: 159 ELYPNMCVTNFTESEQWDTVIEGN-DDLLEKYMSGKSLEALEL----EQEESIRFHNCSL 213 Query: 249 TPVYFGTALGNFGVDHILDGIVEWAPVPQPRETEIREVQPEEEKFSGFVFKIQANMDPKH 308 PVY G+A N G+D++++ I R + + G VFKI+ K Sbjct: 214 FPVYHGSAKNNIGIDNLIEVITNKFYSSTHR---------GQSELCGKVFKIE--YSEK- 261 Query: 309 RDRVAFMRICSGRYEQGMKMHHVRLGKDVNVSDALTFMAGDRNRAEAAYPGDIIGLHNHG 368 R R+A++R+ SG + K + +++ T + G+ + + AY G+I+ L N Sbjct: 262 RQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKAYSGEIVILQNEF 320 Query: 369 TIRIGDTFTQGEKLRFTGVPNFAPEMFR-RIRLKDPLKQKQLLKGLVQLSEEG-AVQVFR 426 +++ + L + + + P +++ LL L+++S+ ++ + Sbjct: 321 -LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYV 379 Query: 427 PLDSNDLIVGAVGVLQFEVVVGRLKTEYKVEAIYEAISVA 466 ++++I+ +G +Q EV L+ +Y VE + +V Sbjct: 380 DSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVI 419
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.9 bits (75), Expect = 0.004 Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 27/192 (14%) Query: 497 VAGTRDGITALQMDIKIEGITKEIMQIALKQAYGARVHILDVMDRAISGHRGDISEHAPR 556 I + ++E + L + A+ +L+ + ++ + + Sbjct: 216 RLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLE-QENKYVEAVNELRVYKSQ 274 Query: 557 ITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDD--DGTVKIASSNGEATK-EAIRR 613 + E+I I + +T+ I LD T I E K E ++ Sbjct: 275 L-------EQIESEILSAKEEYQLVTQLFKNEI-LDKLRQTTDNIGLLTLELAKNEERQQ 326 Query: 614 IEEITAEVEVGTVYNGKVVRIVDFGAFVT-------ILPGKDGLVHISQIAEERVANVSD 666 I A V V KV G VT I+P D L + + + + Sbjct: 327 ASVIRAPVS-VKVQQLKVHTE---GGVVTTAETLMVIVPEDDTLEVTALVQNKDI----G 378 Query: 667 YLEVGQEVKVKV 678 ++ VGQ +KV Sbjct: 379 FINVGQNAIIKV 390
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 73.7 bits (181), Expect = 2e-15 Identities = 69/279 (24%), Positives = 102/279 (36%), Gaps = 80/279 (28%) Query: 403 IMGHVDHGKTSLLDYI-----RRAKVASGEAG-------------GITQHIGAYHVETEN 444 ++ HVD GKT+L + + ++ S + G GIT G + EN Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 445 GMITFLDTPGHAAFTAMRARGAKATDIVILVVAADDGVMPQTIEAIQHAKAGGVPLIVAV 504 + +DTPGH F A R D IL+++A DGV QT + G+P I + Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 505 NKIDKPEADPDRV----KSELSQHGVM-----------------SEDWG----GNNMFV- 538 NKID+ D V K +LS V+ SE W GN+ + Sbjct: 128 NKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLE 187 Query: 539 ------------------------------HVSAKDGTGIDELLEGILLEAEVLELQAVR 568 H SAK+ GID L+E I + + Sbjct: 188 KYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKF----YSSTH 243 Query: 569 EGMA--AGVVVESKLDKGRGPVATVLVQEGTLKQGDIVL 605 G + G V + + + R +A + + G L D V Sbjct: 244 RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVR 282
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 27.9 bits (62), Expect = 0.032 Identities = 12/62 (19%), Positives = 21/62 (33%) Query: 275 IDVINEKLIEVNVQSPGGIMRINKLNNVKLQKKVIDFVESVVNAKEALTQRRSEFRKAID 334 +D I E+L+ + Q + + ++ E V Q SE + I Sbjct: 61 VDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIG 120 Query: 335 DA 336 A Sbjct: 121 LA 122
>FLAGELLIN#Flagellin signature. Length = 507 Score = 30.8 bits (69), Expect = 0.009 Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 14/194 (7%) Query: 168 TNEDVELRSSLIVAEVDS--DELQFVLVTDTLNGVVTLSESGEYSYQATANFNGTDSFTF 225 TN D +L+S I E+ +E+ V NGV LS+ + Q AN T + Sbjct: 102 TNSDSDLKS--IQDEIQQRLEEIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDL 159 Query: 226 SVTDG---------VNAAVEASVTINILAV-NDAPVASHQSLNIGYNREVASRLSAFDVD 275 D VN EA+V + N ++ Y +V S D Sbjct: 160 QKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTT 219 Query: 276 EDELMFEVVTNVSHGELALNDDGSFIYNPKTDFSGNDSFTYRVTDTAGSTSEAVVSITVS 335 + +V N ++G+L +D + + + + T AG+ T Sbjct: 220 APTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFD 279 Query: 336 AKPKESTSDSSGGS 349 K T D+ G+ Sbjct: 280 YKGVTFTIDTKTGN 293
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 29.3 bits (65), Expect = 0.016 Identities = 16/48 (33%), Positives = 23/48 (47%) Query: 185 EAKKAEIAGSVGGALVGAKVGAVMGSIVPGAGTIVGAAAGATIGKHFG 232 + K AE+AGS+ GA+V A + +V G A G + K G Sbjct: 399 DKKTAEMAGSIVGAIVAAIAMVAVIVVVAVVGKGAAAKLGNALSKMMG 446
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 75.4 bits (185), Expect = 2e-18 Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 19/210 (9%) Query: 43 AVSISIAMQASQAVKTPEQVQAPVETQAKPTTQANPVAQTIAKPQPIAKTNAIAQTQAKP 102 A IS+ M A ++ P+ VQ P E +P + P+ + + + Sbjct: 47 AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPV----------VIEK 96 Query: 103 LSPKMAVTDKPKTLKEVAKKLDPIKPIEKTQESAAEVQTEQLSHNQPKADAKQGVSKQAV 162 PK KP K+V + +KP+E S E + A SK Sbjct: 97 PKPKPKPKPKPV--KKVEQPKRDVKPVESRPASPFENTAPA---RPTSSTATAATSKPVT 151 Query: 163 ALSQPTFATPPSQPHYPKKARKKGFQGTATVEVMFNQLGEQLSLTLVDSSGYRLLDKAAL 222 +++ A +QP YP +A+ +G V+ G ++ ++ + + ++ Sbjct: 152 SVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVK 211 Query: 223 NAVEKWQFAAPSPQTAYAYTVRVPVKFALN 252 NA+ +W++ P + + V + F +N Sbjct: 212 NAMRRWRYEPGKPGS----GIVVNILFKIN 237
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.026 Identities = 10/25 (40%), Positives = 12/25 (48%) Query: 37 KIKAGQVTALLGPNGAGKSTLLKSL 61 K L G G GKSTL+ +L Sbjct: 592 GCKFDYSVVLEGTGGIGKSTLINTL 616
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 45.7 bits (108), Expect = 2e-08 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 4/90 (4%) Query: 18 LSQELIVVQAKALMLKEG-KIPSIRNLASALSVDAMAIYYYFKNKEALLEAITISLVS-- 74 L++E ++ A L+ + G + R LA L ++ +Y++ KNK ALL+A+ + +++ Sbjct: 4 LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARH 63 Query: 75 -DIYQPKTGGCWQEALTELSLSYLNLLKQY 103 D P G WQ L ++S+ L +Y Sbjct: 64 HDYSLPAAGESWQSFLRNNAMSFRRALLRY 93
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 385 bits (991), Expect = e-132 Identities = 128/370 (34%), Positives = 196/370 (52%), Gaps = 27/370 (7%) Query: 166 KLEKQALQSQE--PSSFNHSSDSEVEMIGQSPAMLAMKNELKVVASTDLNVLILGDTGTG 223 + +AL + PS S + ++G+S AM + L + TDL ++I G++GTG Sbjct: 113 GIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTG 172 Query: 224 KELVAKSIHQGSPRSSKSLVYLNCAALPESVAESELFGHVKGAFTGAISHRSGKFEIADK 283 KELVA+++H R + V +N AA+P + ESELFGH KGAFTGA + +G+FE A+ Sbjct: 173 KELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEG 232 Query: 284 GTLFLDEIGELPLSLQSKLLRVLQYGDLQKVGSDKSLKVDVRIIAATNKDLKQEVLAGRF 343 GTLFLDEIG++P+ Q++LLRVLQ G+ VG ++ DVRI+AATNKDLKQ + G F Sbjct: 233 GTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLF 292 Query: 344 RADLYHRLSVFPVIVPPLKEREGDIILLSGFFVERSRGKLGLKSLRLSPDSIKLLNSYDW 403 R DLY+RL+V P+ +PPL++R DI L FV+++ K GL R ++++L+ ++ W Sbjct: 293 REDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPW 351 Query: 404 PGNVRELEHVLHRAAVLARAQAQSNIALITPQHFDFYNQQAKNIAAVPPSIGS------- 456 PGNVRELE+++ R L +IT + + + + + + Sbjct: 352 PGNVRELENLVRRLTALYPQD------VITREIIENELRSEIPDSPIEKAAARSGSLSIS 405 Query: 457 -----------KSVLQSTKTEQTLKLATEAFQAQYIRQALAANGHNWAATARALDVDSGN 505 S + + I AL A N A L ++ Sbjct: 406 QAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNT 465 Query: 506 LHRLAKRIGI 515 L + + +G+ Sbjct: 466 LRKKIRELGV 475
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 29.0 bits (65), Expect = 0.030 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Query: 149 DVEVLPESLPAVLTTLMDSGVNEFTKSLVIDCGGTTLDMGVI 190 +V ++ E + A + + V+E T S+V+D GG T ++ VI Sbjct: 137 EVFLIEEPMAAAIGAGLP--VSEATGSMVVDIGGGTTEVAVI 176
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 66.5 bits (162), Expect = 2e-15 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 1/154 (0%) Query: 56 PEKPKIPTAKEVQSKPVTANAATPVSTSIPIMPTVADMPLQVPIMAVPTVNSLSLPSITP 115 P K ++ + KP + P S + Sbjct: 86 PPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAA 145 Query: 116 VIAGIKDVDKAPELLRFIQPKMPLAGRKFKQGGRVLLRLIVEADGVVSQAEVLEAKPKQV 175 + V P L QP+ P + + G+V ++ V DG V ++L AKP + Sbjct: 146 TSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANM 205 Query: 176 FDQSAIEAARKWRFKPAVLSGEAVKVFVDVPINF 209 F++ A R+WR++P G + V + IN Sbjct: 206 FEREVKNAMRRWRYEPG-KPGSGIVVNILFKING 238
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.002 Identities = 18/142 (12%), Positives = 52/142 (36%), Gaps = 10/142 (7%) Query: 49 IRQQNSAWE---HQLKQEIDEVKSNQQELSARLASKRAQLAALNEQLVALNQ-QKQQLTG 104 I++Q S W+ +Q + +D+ ++ + + AR+ +L + +Q Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 105 SYQLAVDDMQLVQ-----GAYQKALSSLTQQWQQSSTSLIEVQRE-QSLAVAKASSSFPS 158 + + + + V+ Y+ L + + + V + ++ + K + + Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 159 LSQLNELIGYAVDDMQMTAQVA 180 + L + + Q + A Sbjct: 311 IGLLTLELAKNEERQQASVIRA 332 Score = 31.0 bits (70), Expect = 0.011 Identities = 11/106 (10%), Positives = 36/106 (33%), Gaps = 10/106 (9%) Query: 51 QQNSAWEHQLKQEIDEVKSNQQELSARLASKRAQLAALNEQLVALNQQ----KQQLTGSY 106 ++ +K++ ++ + + L KRA+ + ++ K +L Sbjct: 182 EEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFS 241 Query: 107 QLA----VDDMQLVQGAYQKALSSLTQQWQQSSTSLIEVQREQSLA 148 L + +++ + + + + L +++ E A Sbjct: 242 SLLHKQAIAKHAVLE--QENKYVEAVNELRVYKSQLEQIESEILSA 285 Score = 29.4 bits (66), Expect = 0.031 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 9/75 (12%) Query: 34 NYLQQKAQIDNRVADIRQQNSAWEHQLKQEIDEVKSN--------QQELSARLASKRAQL 85 L+Q+ + V ++R S E Q++ EI K + E+ +L + Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLE-QIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNI 311 Query: 86 AALNEQLVALNQQKQ 100 L +L +++Q Sbjct: 312 GLLTLELAKNEERQQ 326
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.0 bits (65), Expect = 0.029 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 5/159 (3%) Query: 24 AIASGFLMSLIPLSLASFGMDSSLVA---WLASIFYLGILVGTTCIQNIVAKVGHRFSLI 80 A+ G +M ++P L + + A L +++ L + + + G R L+ Sbjct: 18 AVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLL 77 Query: 81 LFLAMLTLTIVAMLVIPTATVWLIARFIAGFAVAGVFVVVESWLLMADSAKQRAKRLGLY 140 + LA + M P V I R +AG A V +++ +RA+ G Sbjct: 78 VSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGA-TGAVAGAYIADITDGDERARHFGFM 136 Query: 141 MTSLYGGSALGQLAIGPLG-VNGNTPFYWVIGLLMLAIL 178 G G + G +G + + PF+ L L L Sbjct: 137 SACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFL 175
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.002 Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 28 VLGLSGPSGVGKSSLASVLAGM 49 + L G G+GKS+L + L G+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGL 619
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 30.2 bits (68), Expect = 0.015 Identities = 25/140 (17%), Positives = 60/140 (42%), Gaps = 15/140 (10%) Query: 169 MMLAALINLILDPLLIFGIGPFPRLEIEGAAIATVISWVVALSLSTHLLIFKRHLVDFVE 228 L A++ L+ D LL G+ +L+ + +A +++ + S++ +++F R + Sbjct: 178 FALGAVVALVHDVLLTVGLFAVLQLKFDLTTVAALLT-ITGYSINDTVVVFDR-----LR 231 Query: 229 PNIKRLKCNWKQLAHIAQPAAMMNLLNPLANAIIMAMLARIDHSAVAAFGAGT--RLESV 286 N+ + K L + +++ L+ ++ M + + +G Sbjct: 232 ENLIKYK--TMPLRDVMN----LSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFA 285 Query: 287 MLIAVMALSSSLVPFVAQNL 306 M+ V + S V +VA+N+ Sbjct: 286 MVWGVFTGTYSSV-YVAKNI 304
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 30.9 bits (70), Expect = 0.003 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 8/95 (8%) Query: 2 HAVDQIFNDEDFSDQDLQDARFERCSFYHCRFNHADLTDAEFIQCKFIVPGEDEGCDF-- 59 H V I N D+ D L+ AR E + +F+ DL D E + F + Sbjct: 25 HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLADREGMTDLFASGHFERVFISPH 84 Query: 60 ----SYATLTSASFKHCNL--SMALFKGARCYGLE 88 Y+ ++ NL + + +G R ++ Sbjct: 85 RLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.5 bits (113), Expect = 4e-08 Identities = 23/182 (12%), Positives = 64/182 (35%), Gaps = 29/182 (15%) Query: 104 EADYELAKADFKRKGELLRRELISQAEYDLASAQLKSS--KANLASAQDQLSYTELTAPY 161 E++ AK +++ +L + E++ + L LA +++ + + AP Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDK----LRQTTDNIGLLTLELAKNEERQQASVIRAPV 334 Query: 162 DGTVAKISI-DNYQMVQANQPVL-VLQKDSDIDVVIQVPESLASKVTQFNPNAITQPV-V 218 V ++ + +V + ++ ++ +D ++V V + Q + Sbjct: 335 SVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINV------GQNAII 388 Query: 219 RFANDPSSSYAALLKEHATQVTPGT-------QSYEVVFTLPRPA------NMTVLPGMS 265 + P + Y L+ + + + V+ ++ N+ + GM+ Sbjct: 389 KVEAFPYTRYGYLVGK-VKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMA 447 Query: 266 AE 267 Sbjct: 448 VT 449 Score = 34.8 bits (80), Expect = 5e-04 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 78 EGQQVNKGAVLARLDRRDSQNTLLNREADYELAKADFKRKGELLR-------RELISQAE 130 EG+ V KG VL +L ++ L ++ A+ + R L R EL E Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173 Query: 131 YDLASAQLKSSKANLASAQDQLS 153 + + + ++Q S Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFS 196
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 488 bits (1259), Expect = e-158 Identities = 210/1045 (20%), Positives = 439/1045 (42%), Gaps = 45/1045 (4%) Query: 4 AEYSITHKVISWMFALLLLVGGSISFFSLGQLEFPEFTIKQALVVTAYPGASPEQVEEEV 63 A + I + +W+ A++L++ G+++ L ++P V YPGA + V++ V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 TLPLEDALQQLDGIKHITSV-NSAGLSQIEIEIKENYDASELPQVWDEVRRKINDKAVEL 122 T +E + +D + +++S +SAG I + + D +V+ K+ L Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTD---PDIAQVQVQNKLQLATPLL 118 Query: 123 PPGVHAPSVIDDFGD---VYGILLNVSGDGYSDRELQNYADF-LRRELVLVDGIKKVTIA 178 P V + + + G + ++ +Y ++ L ++G+ V + Sbjct: 119 PQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLF 178 Query: 179 GIVNEQVVVEISQQKLNALGLDQNYIYGLINSQNVVSNAGSMLVGDN------RIRIHPT 232 G + + + LN L + + QN AG + I Sbjct: 179 G-AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQ 237 Query: 233 GEFDNVRQMERLIISPPGSAKLIYLGDIAKIYKDTEETPSNIYHASGNKALSIGIAFSSG 292 F N + ++ + ++ L D+A++ + E + I +G A +GI ++G Sbjct: 238 TRFKNPEEFGKVTLRVNSDGSVVRLKDVARV-ELGGENYNVIARINGKPAAGLGIKLATG 296 Query: 293 VNVVKVGEAVNERMSELNSELPIGMALDTVYDQSKMVDQTVNGFLVNLAESIAIVIGVLL 352 N + +A+ +++EL P GM + YD + V +++ + L E+I +V V+ Sbjct: 297 ANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMY 356 Query: 353 VFMG-VRSGLLMGLVLLLTILGTFIMMNVLNIELQIISLGALIIALGMLVDNAIVVTEGI 411 +F+ +R+ L+ + + + +LGTF ++ + +++ +++A+G+LVD+AIVV E + Sbjct: 357 LFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV 416 Query: 412 L-IGIKRGQTRLETAKQVISQTQWPLLGATIIAIIAFAPIGLSDNATGEFCASLFQVLLI 470 + ++ E ++ +SQ Q L+G ++ F P+ +TG ++ Sbjct: 417 ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVS 476 Query: 471 SLFISWITAMTLTPFFCNLMFKDGIVSDDENDDPYKGW-------LFGLYRHSLNYAMRF 523 ++ +S + A+ LTP C + K EN + GW Y +S+ + Sbjct: 477 AMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGS 536 Query: 524 RGLTLTLVVAALITSVIGFGYVKNVFFPASNTPMFFVDVWMPEGSDIKATERLLSRIETD 583 G L + + V+ F + + F P + +F + +P G+ + T+++L ++ Sbjct: 537 TGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY 596 Query: 584 LLEQQKTTDTGLVNLTTVIGQG-AQRFVLSYVPEKGYK-AYGQILLEMTDLQALNKYMRL 641 L+ +K + + G AQ +++V K ++ G + M L Sbjct: 597 YLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAK--MEL 654 Query: 642 LERELSLKFPEAEYRFKYMENGPSPAAKIEARFFGEDPQVLRQLAAQAETILKAEPTAV- 700 + P + ++ + G L Q Q + P ++ Sbjct: 655 GKIRDGFVIPFNMPAIVELGTATGFDFELIDQA-GLGHDALTQARNQLLGMAAQHPASLV 713 Query: 701 GVRHNWRNQVTLVRPQLAQAQARETGISKQDLDTALLTNFSGQQIGTYRENSHLLPIIAR 760 VR N + ++ Q +A+ G+S D++ + T G + + + + + + Sbjct: 714 SVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQ 773 Query: 761 APAEERLDAQSIWKLQVWSRDNNTFVPVTQVVSDFSTEWEDPLIMRRDRKRVISVLADPI 820 A A+ R+ + + KL V S N VP + + P + R + + + + Sbjct: 774 ADAKFRMLPEDVDKLYVRSA-NGEMVPFSAFT-TSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 821 NGAD-ETADSVFRKIKADIEAIPLPAGYELEWGGEYETSMEAQESVFSSIPLGYLAMFLI 879 G A ++ + + LPAG +W G + + + + ++ +FL Sbjct: 832 PGTSSGDAMALMENLASK-----LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLC 886 Query: 880 TVLLFNSVRQPLVIWFTVPLALIGVVSGLLLFDAPFSFMALLGLLSLTGMIIKNGIVLVD 939 L+ S P+ + VPL ++GV+ LF+ ++GLL+ G+ KN I++V+ Sbjct: 887 LAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVE 946 Query: 940 QIN-LELSQGKEAYQAVVDSAVSRVRPVLMAAITTMLGMLPLLSDAFFGS-----MAITI 993 L +GK +A + + R+RP+LM ++ +LG+LPL GS + I + Sbjct: 947 FAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGV 1006 Query: 994 IFGLGFASVLTLIVLPVTYTLAFRI 1018 + G+ A++L + +PV + + R Sbjct: 1007 MGGMVSATLLAIFFVPVFFVVIRRC 1031
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.9 bits (192), Expect = 8e-17 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 1108 DAGYVLLVEDNFINQQVATELLKSAGYTVDVAENGQIALDMLDKAKYDAVLMDIQMPVMD 1167 +L+ +D+ + V + L AGY V + N + D V+ D+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 1168 GLTATKELRKRYPVDELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLTEL 1219 ++K P +LPV+ M+A K+ G ++ KP LTEL Sbjct: 62 AFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111 Score = 62.5 bits (152), Expect = 6e-12 Identities = 19/110 (17%), Positives = 46/110 (41%), Gaps = 10/110 (9%) Query: 968 KTLVIDDNPTALQIYSSVMRDFHFNVDTAASGPEGLYKLSKNPVDLLLLDWMMPEMDGVE 1027 LV DD+ + + + ++V ++ ++ DL++ D +MP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1028 VIKQIDQMVADGRLEKRPIIIMMTAYTAEPMQKDVEA--ANVFALLQKPF 1075 ++ +I + P+++ M+A ++A + L KPF Sbjct: 65 LLPRIKK-----ARPDLPVLV-MSAQNTFMTA--IKASEKGAYDYLPKPF 106
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.2 bits (164), Expect = 2e-14 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%) Query: 5 ILICDDSALARKQMARTLPKDWDVDITYATNGLEGMEAIREGKGEVVFLDLNMPVMDGYQ 64 IL+ DD A R + + L D+ +N I G G++V D+ MP + + Sbjct: 6 ILVADDDAAIRTVLNQAL-SRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 65 VLEAIQKEDLPALVIVVSGDIQIKAHERVRSLGALDFIQKPVSADAISHILQ 116 +L I+K V+V+S + GA D++ KP + I+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>INTIMIN#Intimin signature. Length = 939 Score = 39.3 bits (91), Expect = 8e-05 Identities = 51/251 (20%), Positives = 90/251 (35%), Gaps = 28/251 (11%) Query: 279 NELATTLPLEADKYTVSAGGTFGVTADLATKNDDGSYTRLQTPTSVSFSSSCVSSNSASI 338 N + T+ + ++ V G TAD + DG+ + + + A++ Sbjct: 540 NNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGT-----EAITYTATVKKNGVAQANV 594 Query: 339 DSPVTTLSGTA--SSTFQNTSCSG------NSERNDQIIASVVAGNQTLTAELDFS-LAS 389 +SGTA S+ NT+ SG S++ Q++ S T + Sbjct: 595 PVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVD 654 Query: 390 QTLANLSFISAEPTSIRIKGAGGTNSSKSSLITFKV-ADANGQPIAQQDVDFSLDTSVGG 448 QT A+++ I A+ T+ ++ IT+ V +P++ Q+V F+ Sbjct: 655 QTKASITEIKADKTTA--------VANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLS 706 Query: 449 IKFANGDTNTSNTSNSAGLVSTTVLSGTVPTPVRVLASATANGESVTTQSEQLTINTGLP 508 + +N L STT V RV A LTI+ G Sbjct: 707 NS---TEKTDTNGYAKVTLTSTTPGKSLV--SARVSDVAVDVKAPEVEFFTTLTIDDGNI 761 Query: 509 QQLGFSLSSSL 519 + +G + L Sbjct: 762 EIVGTGVKGKL 772
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.6 bits (95), Expect = 6e-06 Identities = 22/155 (14%), Positives = 45/155 (29%), Gaps = 27/155 (17%) Query: 45 ISSKVPGRVEEVLVRRGDKVNEGDLL---------YAIYSPELKAKLMQAEGGRDAALAM 95 I V+E++V+ G+ V +GD+L + + E R L+ Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 96 QQEADNGARKQQIAASKEQWLKAQAAAKLARTTFDRVEVLFNEGVLARQKRDEAFTQWQA 155 E + ++ E + + + ++ R E F+ WQ Sbjct: 159 SIELNK---LPELKLPDEPYFQNVSEEEVLR---------------LTSLIKEQFSTWQN 200 Query: 156 AKYTEQAALAMYQMADEGARVETKAAAAGNARMAE 190 KY ++ L + + Sbjct: 201 QKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 66.6 bits (162), Expect = 1e-15 Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 7/137 (5%) Query: 3 RRDREVKLLDIARELILEYGMVSFKFTDIAKRAEVSRATLYKYFSGKEDVLVSLFVHDAE 62 ++ +LD+A L + G+ S +IAK A V+R +Y +F K D+ ++ Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 63 NTKQMLVDIQADLTLNNREKILLSLLAPVASSMETLNRSGTLLLSANPGIFMYASDKQQA 122 N ++ ++ QA + + L+ + S++ R + ++ + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLM-------EIIFHKCEFVG 121 Query: 123 RLEQIVSEIRQITLEFW 139 + + R + LE + Sbjct: 122 EMAVVQQAQRNLCLESY 138
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 122 bits (307), Expect = 1e-33 Identities = 88/401 (21%), Positives = 136/401 (33%), Gaps = 111/401 (27%) Query: 22 VVQAAENESQQTEHMWSQGWYLGGQFGLATTNVSNAGLDELYEQAGIDASSTKVDDSGAS 81 V QAA ++ WY G + G + Y G ++ ++ Sbjct: 18 VAQAAPKDNT---------WYTGAKLGWSQ-----------YHDTGFINNNGPTHENQLG 57 Query: 82 YGLFLGYKFNQYFSVEAGYLDLGERSVEFSGQTTDLDAYYDLAEHVYPETGDGWSLSVLG 141 G F GY+ N Y E GY LG + S + A G L+ Sbjct: 58 AGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQ-------------GVQLTAKL 104 Query: 142 TYPLSERFSVTGKLGYFAWELDAVTSSIADEASQVGSDSHSGSGVWLGAELGYQINHDMQ 201 YP+++ + +LG W D +++ G + +G + Y I ++ Sbjct: 105 GYPITDDLDIYTRLGGMVWRADT-------KSNVYGKNHDTGVSPVFAGGVEYAITPEIA 157 Query: 202 AYVSYQHMPLDADE--------VGVFALGLRYWFGSDSRDAAPVLPAAVVPTLAKIGSDG 253 + YQ D G+ +LG+ Y FG +AAPV+ A P Sbjct: 158 TRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQG--EAAPVVAPAPAP--------- 206 Query: 254 DSDSDGVFNAQDQCLDTPSTHAVDSRGCTLFAPRVVEMKLT----VLYENDSDKIDLSNT 309 AP V T VL+ + + Sbjct: 207 -------------------------------APEVQTKHFTLKSDVLFNFNKATLKPEGQ 235 Query: 310 DKIQKLADFIEQYDIK--QITVFGHTSAVGSQAYNQKLSERRAASVAEMLAADFNIATGI 367 + +L + D K + V G+T +GS AYNQ LSERRA SV + L + I Sbjct: 236 AALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISK-GIPADK 294 Query: 368 IKAVGKGESEPIS--------------HIPEQNRRIEVYLN 394 I A G GES P++ +RR+E+ + Sbjct: 295 ISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVK 335
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 32.4 bits (73), Expect = 0.044 Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 31/155 (20%) Query: 936 VEVTIELSNTGTAPAYDVVLTDVLNANLFDVTSALEATTPANFSYSFVSPTVTYTTSSAI 995 VE I +SN G DVV+ D L+ + + LEA +S T + Sbjct: 333 VEYVISVSNPGDLVLRDVVVEDTLSPGV----TVLEAAGAQ------ISCNKVVWTVKEL 382 Query: 996 APGQSLTFSYTANVKQGVVTGSSYDNNVSVVGDSQQGDISNPDRDSNDSATPTAAIGSLA 1055 PG+SL + + T + NNV V S G ++ A T +A Sbjct: 383 NPGESLQYKVLVRAQ----TPGQFTNNVVVKSCSDCGTCTS-------CAEATTYWKGVA 431 Query: 1056 ISELVLIDSTESWTSDAVDGVEAAIGETLTYRLTV 1090 + + ++D T D V +GE YR+ V Sbjct: 432 ATHMCVVD-----TCDPV-----CVGENTVYRICV 456
>SECA#SecA protein signature. Length = 901 Score = 40.6 bits (95), Expect = 2e-05 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 8/84 (9%) Query: 294 MRLVQGDV-----GSGKTLVAALAA-LQAIESGYQVAMMAPTELLAEQHAINFKSWFEPL 347 M L + + G GKTL A L A L A+ +G V ++ + LA++ A N + FE L Sbjct: 92 MVLNERCIAEMRTGEGKTLTATLPAYLNAL-TGKGVHVVTVNDYLAQRDAENNRPLFEFL 150 Query: 348 GLKVGW-LAGKLKGKARAQSLADI 370 GL VG L G R ADI Sbjct: 151 GLTVGINLPGMPAPAKREAYAADI 174
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 33.4 bits (76), Expect = 6e-04 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 11/92 (11%) Query: 36 GYYYLSGNEKIEEPQIIAPVVI-----------PDPVPEQPLETEAVPEPEIVEAVPVQL 84 G Y S ++ IE P P+ + P E PEPE + P + Sbjct: 26 GLLYTSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEA 85 Query: 85 PEVEPVPEVEPLPALADSDTYVQQKVIEVADG 116 P V P+ +P P +Q +V Sbjct: 86 PVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 117
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 42.1 bits (99), Expect = 9e-06 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 25/145 (17%) Query: 668 LLALALLVAGIIFTFRFGAKLAAIV-VAVPA--LSALLTLACLGITHNPLTLFHALALIL 724 L +LV +++ F + I +AVP L LA G + N LT+F ++L Sbjct: 344 LFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMF---GMVL 400 Query: 725 VFGIGVDYSL----------------FFAESKQQTRGVMMAVFMSAVSTLLAFGLLAF-- 766 G+ VD ++ +++ + A+ A+ F +AF Sbjct: 401 AIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460 Query: 767 -SQTPAINAFGLTLLLGISFTFLLS 790 S F +T++ ++ + L++ Sbjct: 461 GSTGAIYRQFSITIVSAMALSVLVA 485 Score = 35.2 bits (81), Expect = 0.001 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 23/221 (10%) Query: 212 AIVMAKGSDSAFNPKAQQSQLAALQTAFHSVNQQDADIEIIKAGALFHAAAATENAKQEV 271 I +A G+++ KA +++LA LQ F Q + + + + EV Sbjct: 290 GIKLATGANALDTAKAIKAKLAELQPFF----PQGMKVLY-----PYDTTPFVQLSIHEV 340 Query: 272 SSIGLLSLIGVITLVWLAFRSFMPLTIAVITVSTSLLFAVVMTTLLFGELHLLTLVFGTS 331 +++ V +++L ++ I I V LL + ++ LT+ Sbjct: 341 VKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVL 400 Query: 332 LIGISIDYCFHYY--CERLHH-----PSDSSEKVIQKIFAAITLALVTSVIAYSAIGIAP 384 IG+ +D ER+ P +++EK + +I A+ + + I +A Sbjct: 401 AIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVF--IPMAF 458 Query: 385 FPG-----MQQVAVFCASGLVGAYLTLLLAYPTLAARPLKE 420 F G +Q ++ S + + L L+ P L A LK Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKP 499
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 103 bits (259), Expect = 5e-29 Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 15/250 (6%) Query: 3 KRVLITGSSRGIGKAIALKLAASGFDIAMHFHSNQIAADATKAELQQLGIKVSCLQFDIA 62 K ITG+++GIG+A+A LA+ G I N + + L+ D+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 63 ARAAVKQAIEQDIEQHGAYYGVVLNAGINADTAFPAMTESEWDSVVHTNLDGFYNVIHPT 122 AA+ + + + G +V AG+ ++++ EW++ N G +N + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR-S 126 Query: 123 VMPMVQGRQGGRIITLASVSGIAGNRGQVNYSASKAGIIGATKALSLELAKRKITVNCIA 182 V + R+ G I+T+ S Y++SKA + TK L LELA+ I N ++ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 183 PGLIETDM-----VSDIPKEMV--------NTIVPMRRMGKPSEIAGLANYLMSEDAAYI 229 PG ETDM + E V T +P++++ KPS+IA +L+S A +I Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 230 TRQVISVNGG 239 T + V+GG Sbjct: 247 TMHNLCVDGG 256
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 29.4 bits (66), Expect = 0.022 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 4/71 (5%) Query: 127 IPKSLDITDPAVWQSHIKA--DVDLVFVSHVYSNTGQLAPVNDIVEAAKSKAALTLIDVA 184 +P D + +K + DL+F + + TG A +VE AK V Sbjct: 60 VPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAV- 118 Query: 185 QSAGIVPLDLG 195 S G+ + L Sbjct: 119 -SDGVDVIYLE 128
>PF06580#Sensor histidine kinase Length = 349 Score = 44.9 bits (106), Expect = 2e-07 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 39/196 (19%) Query: 161 LNEFTDLIIEQADRLRNLVDRL-------LGPQKPTQHSLYNIHEVIQKVLKLVNVTLPD 213 LN LI+E + R ++ L L Q SL + V+ L+L ++ D Sbjct: 179 LNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFED 238 Query: 214 NIELTQDYDPSIPDIEMDPDQLQQTILNIVQNAVQ-ALEPS--GGHIRLKTRTQHQVTIG 270 ++ +P+I D+++ P +Q +V+N ++ + GG I LK + Sbjct: 239 RLQFENQINPAIMDVQVPPMLVQT----LVENGIKHGIAQLPQGGKILLKGTKDNGT--- 291 Query: 271 TKRHKLVLMLSVIDDGPGIQPELMDTLFYPMVTGREQGSGLGLSIAHNFARLHGG---RI 327 + L V + G ++ +G GL ++ G +I Sbjct: 292 -------VTLEVENTGSLALKN------------TKESTGTGLQNVRERLQMLYGTEAQI 332 Query: 328 DCDSTVGHTEFTITLP 343 G + +P Sbjct: 333 KLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 569 bits (1467), Expect = 0.0 Identities = 205/474 (43%), Positives = 296/474 (62%), Gaps = 12/474 (2%) Query: 5 VWILDDDSSIRWVLEKALQSAKFSSASFAAAESLWQALETAQPQVIVSDIRMPGTDGLTL 64 + + DDD++IR VL +AL A + + A +LW+ + ++V+D+ MP + L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 LERLQNHYPHIPVIIMTAHSDLDSAVSAYQAGAFEYLPKPFDIDEAISLVDRALTHAKEQ 124 L R++ P +PV++M+A + +A+ A + GA++YLPKPFD+ E I ++ RAL K + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 125 SSTITTEEPIVATPEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVASALHKH 184 S E+ ++G + AMQE++R + RL ++ ++++I G+SGTGKELVA ALH + Sbjct: 126 PSK--LEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183 Query: 185 SPRKGKPFIAINMAAIPKDLIESELFGHEKGAFTGAGSVRQGRFEQANGGTLFLDEIGDM 244 R+ PF+AINMAAIP+DLIESELFGHEKGAFTGA + GRFEQA GGTLFLDEIGDM Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 245 PLDVQTRLLRVLADGQFYRVGGHSPVQVDVRIIAATHQNLEQRVHQGGFREDLFHRLNVI 304 P+D QTRLLRVL G++ VGG +P++ DVRI+AAT+++L+Q ++QG FREDL++RLNV+ Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303 Query: 305 RVHLPPLSQRREDIPQLARHFLVIAAKEIGVEPKVLTKETANKLSQLPWPGNVRQLENTC 364 + LPPL R EDIP L RHF+ A KE G++ K +E + PWPGNVR+LEN Sbjct: 304 PLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVRELENLV 362 Query: 365 RWLTVMASGQEILPLDLPPELLQEPKLSHAQSSDCDDWQGALKLFIDQRLSD-------- 416 R LT + I + EL E S + + ++ +++ + Sbjct: 363 RRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDA 422 Query: 417 -GDSDLLTEVQPAFERILLETALKHTNGHKQEAAKRLGWGRNTLTRKLKELEMD 469 S L V E L+ AL T G++ +AA LG RNTL +K++EL + Sbjct: 423 LPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 98.4 bits (245), Expect = 6e-26 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 1/136 (0%) Query: 2 SRILLVDDDLGLSELLAQLLELEGFKLTLAHDGQSGLDLAIEQQFDLILLDVMLPKLNGF 61 + IL+ DDD + +L Q L G+ + + + + DL++ DV++P N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 EVLRALRS-KKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAIIRRTH 120 ++L ++ + PVL+++A+ + + E GA DYLPKPF+ EL+ I + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 121 IQPSEAPQAIHQYGDI 136 +PS+ + Sbjct: 124 RRPSKLEDDSQDGMPL 139
>PF06580#Sensor histidine kinase Length = 349 Score = 36.8 bits (85), Expect = 2e-04 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 14/124 (11%) Query: 282 EADQLEQMIAELLELSRVKLNANENKRSLELAETLSQVLDDADFEAQQ----QQKQLHID 337 + + +M+ L EL R L N R + LA+ L+ V D+ + + Q Sbjct: 189 DPTKAREMLTSLSELMRYSL-RYSNARQVSLADELTVV--DSYLQLASIQFEDRLQFENQ 245 Query: 338 IDESI----VIPLYPRPLSRAVENLLRNAIRYANTQVSIQAMASASASGVQIEIIDDGPG 393 I+ +I V P+ + L VEN +++ I I + V +E+ + G Sbjct: 246 INPAIMDVQVPPMLVQTL---VENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL 302 Query: 394 ISDE 397 Sbjct: 303 ALKN 306
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 38.5 bits (89), Expect = 7e-06 Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 9/170 (5%) Query: 3 NWQQRESYLTDIAERCLRGHKSFDLRRSHLVEASQISKGTIYNHFPTEADLVVAVATAHY 62 Q+ ++ D+A R + +A+ +++G IY HF ++DL + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 63 RKRLERAA-IDDALYADYLTRFL-----MHHCWGLRDDLLYDRFIISRVMPNSELLQQVT 116 E D L+ + + II + V Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 117 DENRAAFEQIYGEYIRWNRELIKAVGVVEGFN---RAELVGNYLRGALIN 163 R + Y + + I+A + A ++ Y+ G + N Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN 177
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.010 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Query: 39 KWDKEVEVLIIGSGFAGLAAAIEATRKGAKD 69 K ++ VL++ S AI+A+ KGA D Sbjct: 71 KARPDLPVLVM-SAQNTFMTAIKASEKGAYD 100
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.4 bits (66), Expect = 0.017 Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 151 VLVTGASGGVGSVAVTLLAQLGYRVVA 177 LVTGA+G +G L + G++VV Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVG 29
>OUTRSURFACE#Outer surface protein signature. Length = 273 Score = 27.6 bits (61), Expect = 0.020 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Query: 31 SLLLEVVMADESMSEQEAKLL--PDLLTTTLNLSTDDVQSLISEAKRSQQKSTSLYEFTQ 88 S +LE D+S +AKL DL TT L +D ++L+S S+ K+++ F + Sbjct: 73 SGVLEGTKDDKS----KAKLTIADDLSKTTFELFKEDGKTLVSRKVSSKDKTSTDEMFNE 128 Query: 89 A 89 Sbjct: 129 K 129
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 64.3 bits (156), Expect = 9e-13 Identities = 40/275 (14%), Positives = 80/275 (29%), Gaps = 10/275 (3%) Query: 11 RKDKSKEEAQAAEAAKLEAEKLELERIEAERFEVERVAAEQAEAARIEAEQAEAQRLADE 70 +K + + ++ + + E+ RV E A +E E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVD-EAPVPPPAPATPSETTETVAE 1042 Query: 71 QAAQVEAQRLADEQAAQVEAQRVAAEQAEAQRLAGEQAAQV-EAQRVAAEQAEAQRLADE 129 + Q +EQ A E E A+ + + Q E + +E E Q + Sbjct: 1043 NSKQESKTVEKNEQDAT-ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 130 QAGQAEAQRIEAERLESARIEAEQARLAAEQAEQARLAAGQAAQVEEERLESARIEADRV 189 + E + E ++E+ + + E ++ ++ + + + Q E R + Sbjct: 1102 ETATVEKE--EKAKVETEKTQ-EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 190 AAEQAAQAAQAEAQRVEAERIEAERLEAERVAAERVVAEQARLAAEQAEAVRIEQERLEA 249 ++ A + + + +E E+ V V E A E+ Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPE---NTTPATTQPTVNSES 1215 Query: 250 ERLESERVAAEQARLAAEQAEAARIEQERLEAERL 284 R R E A L Sbjct: 1216 SNKPKNR-HRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 57.8 bits (139), Expect = 1e-10 Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 12/227 (5%) Query: 110 QVEAQRVAAEQAEAQRLADEQAGQAEAQRIEAERLESARI---------EAEQARLAAEQ 160 +VE + + + QA E +E AE Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 161 AEQARLAAGQAAQVEEERLESARIEADRVAAEQAAQAAQAEAQRVEAERIEAERLEAERV 220 ++Q + Q E R A + A E + +E E + E + Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 221 AAERVVAEQARLAAEQAEAVRIE-QERLEAERLESERVAAEQAR--LAAEQAEAARIEQE 277 A + + E ++ Q + E+ E+ + AE AR + + + Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 278 RLEAERLESERLEAERIAAEQAEAQRVEAERIAAEAAAQQAEEQQPE 324 ++ + + QP Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPT 1210 Score = 56.6 bits (136), Expect = 3e-10 Identities = 49/321 (15%), Positives = 96/321 (29%), Gaps = 35/321 (10%) Query: 60 EQAEAQRLADEQAAQVEAQRLADEQAAQVEAQRVAAEQAEAQRLAGEQAAQVEAQRVAAE 119 E + + D + + QA E A A Sbjct: 984 EVEKRNQTVD--TTNITT--PNNIQADVPSVPSNNEEIARVDEA-------PVPPPAPAT 1032 Query: 120 QAEAQRLADEQAGQAEAQRIEAERLESARIEAEQARLAAEQAEQARLAAGQAAQVEEERL 179 +E E + Q E++ +E ++ A Q R A++A+ A Q +V + Sbjct: 1033 PSETTETVAENSKQ-ESKTVEKNEQDATETTA-QNREVAKEAKSNVKANTQTNEVAQSGS 1090 Query: 180 ESARIEADRVAAEQAAQAAQAEAQ---RVEAERIEAERLEAERVAAERVVAE----QARL 232 E+ E ++ A E + +VE E+ + +V+ ++ +E QA Sbjct: 1091 ET--KETQTTETKETA---TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEP 1145 Query: 233 AAEQAEAVRIEQERLEAERLESERVAAEQARLAAEQAEAARIEQERLEA-ERLESERLEA 291 A E V I++ + + A++ EQ + A Sbjct: 1146 ARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPA 1205 Query: 292 ERIAAEQAEAQRVEAERIAAEAAAQQAEEQQPEPQAKPVKEGLFARLKRGLKRTSESIGS 351 +E+ R + ++ EP + L + ++ S Sbjct: 1206 TTQPTVNSESSNKPKNR---HRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLS 1262 Query: 352 ------GFIGLFSGKKIDDDL 366 F+ L GK + + Sbjct: 1263 DARAKAQFVALNVGKAVSQHI 1283 Score = 52.4 bits (125), Expect = 5e-09 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 16/201 (7%) Query: 143 RLESARIEAEQARLAAEQAEQARLAAGQAAQVEEERLESAR----IEADRVAAEQAAQAA 198 L + +E + V E AR A + Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 199 Q-AEAQRVEAERIEAERLEA-ERVAAERVVAEQARL----AAEQAEAVRIEQERLEAERL 252 AE + E++ +E +A E A R VA++A+ + E + E E + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 253 ESERVAAEQARLAAEQAEAARIEQERLEAERLESERLEAERIAAEQAEAQRVEAERIAAE 312 E++ A + + E + ++ ++ ++ ++E + QAE R E Sbjct: 1099 ETKE-TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP-QAEPAR---ENDPTV 1153 Query: 313 AAAQ-QAEEQQPEPQAKPVKE 332 + Q++ +P KE Sbjct: 1154 NIKEPQSQTNTTADTEQPAKE 1174
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 5e-06 Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 28/167 (16%) Query: 400 LRKARLRLELLGVSSDTIKQLERTGKTIYRVPFYAEQDGFISKLTVR-HGMYVQPGDTLF 458 LR+ + LL +L + + A + +L V G V +TL Sbjct: 304 LRQTTDNIGLL------TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLM 357 Query: 459 EIV-DLSSVWVIADVFENEQSWLEQGRPVEVTSAAQGLFD------LESTIDYIYPELDP 511 IV + ++ V A V + ++ G+ + A F L + I + Sbjct: 358 VIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEA---FPYTRYGYLVGKVKNINLDAIE 414 Query: 512 VSR---AMRVRIKLDNPDKL-------LKPGTLVDVKLFGGPKREVL 548 R V I ++ L G V ++ G R V+ Sbjct: 415 DQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTG-MRSVI 460 Score = 33.3 bits (76), Expect = 0.003 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 10/83 (12%) Query: 345 VNGWIETLMVHNVGQRVKKGQLLYELYSP----ELINAQDDYMQAVDYLTQDKSRGQGLL 400 N ++ ++V G+ V+KG +L +L + + + Q +QA +++R Q L Sbjct: 103 ENSIVKEIIVKE-GESVRKGDVLLKLTALGAEADTLKTQSSLLQA----RLEQTRYQILS 157 Query: 401 RKARL-RLELLGVSSDTIKQLER 422 R L +L L + + Q Sbjct: 158 RSIELNKLPELKLPDEPYFQNVS 180
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 682 bits (1761), Expect = 0.0 Identities = 217/1056 (20%), Positives = 425/1056 (40%), Gaps = 53/1056 (5%) Query: 9 SIKQRAMVLVLTAVIALIGYQAMRMTPLDALPDLSDVQVIVKTSYPGQAPQLVEDQITYP 68 I++ VL ++ + G A+ P+ P ++ V V +YPG Q V+D +T Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 69 LSTAMLAVPGAQTVRGFSM-FGDSYVYIIFEDGTDIYWARSRVLEYLSQTQGQLPDSV-T 126 + M + + S G + + F+ GTD A+ +V L LP V Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 127 PTLGPDASGVGWVFQYALVDRKGKHDLAQLRSLQDWFLKLELQSVEGVSEVATIGGMEQS 186 + + S ++ V + +K L + GV +V G + + Sbjct: 125 QGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-QYA 183 Query: 187 YQIIVDPHKLALYQIDLMTVKNALDNSNSSTGGSVIEMA------EAEYMITSSGYRQTL 240 +I +D L Y++ + V N L N + + I + + Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNP 243 Query: 241 ADFEEIPLGIVSESGTPVLMKDVAQLRTGPAARRGIAELNGEGEVVGGIVVMRYGENALA 300 +F ++ L V+ G+ V +KDVA++ G IA +NG+ G + + G NAL Sbjct: 244 EEFGKVTL-RVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGANALD 301 Query: 301 TINNVKQKLKEIENGLPDGVELVITYDRSELILNSVDNLKHKVLEEMLVVAVICLIFLLH 360 T +K KL E++ P G++++ YD + + S+ + + E +++V ++ +FL + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 361 ARSTLVAIISLPISILISFIVMNMIGVNANIMSLGGIAIAIGAVVDAAIVMVENTHKHLE 420 R+TL+ I++P+ +L +F ++ G + N +++ G+ +AIG +VD AIV+VEN + + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 421 HYREQHNGATPTGEAHWELVRKSSVEVGPALFFSLLIITLSFVPVFALEAQEGRLFHPLA 480 E KS ++ AL ++++ F+P+ G ++ + Sbjct: 422 ----------EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFS 471 Query: 481 YTKTFAMAASAILAITLIPVLMGYFVRGKIPDERK---------NPISRFLIAIYEPTLR 531 T AMA S ++A+ L P L ++ + + N + Y ++ Sbjct: 472 ITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVG 531 Query: 532 LVLRFPKITILLAIVTLASAVYPMTKMGSEFMPELEEGDLLYMPTTLPSVSAGKAAEILQ 591 +L +L+ + +A V ++ S F+PE ++G L M + + ++L Sbjct: 532 KILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLD 591 Query: 592 QTDRLIKT--VPEVKRVFGKVGRAMTATDPAPLTMLETTIMLNPRDTW-REGMTLEGIIA 648 Q V+ VF G + + L P + + + E +I Sbjct: 592 QVTDYYLKNEKANVESVFTVNGF---SFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIH 648 Query: 649 ELQRTVKVPGMTNAWVQPIK-TRIDMLSTGVRTPVG-IKISGADIEELQRIGTEIEAVVS 706 + ++ + + +V P I L T I +G + L + ++ + + Sbjct: 649 RAKM--ELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706 Query: 707 KLPGT-ESAFAQRTSGGRYIDIEPDLKNAARYGMTLKDIQDVVQMAIGGMQVGQSIQGQE 765 + P + S +E D + A G++L DI + A+GG V I Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 766 RYPINIRYPRELRDSIEKLEDLPVLTKTGKYLPLGNLASISISDGAPMLASENGRLISWV 825 + ++ + R E ++ L V + G+ +P + G+P L NG + Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEI 826 Query: 826 F-VDLKDISIGEYITSARAALDEQISLPPRYSYSFAGQYEYMQRVEAKMQLVVPLMLAVI 884 S G+ + + LP Y + G + + +V + V+ Sbjct: 827 QGEAAPGTSSGDAMALMENLASK---LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVV 883 Query: 885 FMLLMMTFSSFIQASVIMLSLPFSLVGSAWLLYFLNFDFSVAVSVGMIALAGVAAEFGVV 944 F+ L + S+ +ML +P +VG N V VG++ G++A+ ++ Sbjct: 884 FLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAIL 943 Query: 945 MQVYLNNSIRDRKLAGLYNKRSDLSEALIHGAVMRIRPKAMTVATIFFGLLPIMWGSGTG 1004 + + + + + EA + MR+RP MT G+LP+ +G G Sbjct: 944 IVEFAKDLMEKEGK--------GVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAG 995 Query: 1005 NEVMQKIAAPMVGGMVTAPILSLFVIPAIYLLIYGR 1040 + + ++GGMV+A +L++F +P +++I Sbjct: 996 SGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.4 bits (118), Expect = 1e-08 Identities = 56/339 (16%), Positives = 111/339 (32%), Gaps = 70/339 (20%) Query: 75 GKVENIYVKPNQKVEAGQLIYDLDAEPYQIALNKALVAQETAKVN--------------- 119 V+ I VK + V G ++ L A + K + A++ Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 120 ---LSLSREDVKLALKQHEVAIADVSIT------KNQLNAASKDLAWKQKTLARFVEQNR 170 L L E + + EV I +NQ +L K+ + + Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 171 VVPDT-------------------ITKSQLDEQQTAVDLANAQVQTYSTQIEKAQMAEHT 211 + I K + EQ+ A +++ Y +Q+E+ E Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQ---IESE 281 Query: 212 ALLNIEKSRLAVESRQSDLNSEH-----------ENVAQAQWNIDNTKIYAPTDGYVTNF 260 L E+ +L + ++++ + +A+ + + I AP V Sbjct: 282 ILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQL 341 Query: 261 -IMREGQYVGVA-PRMQMY-TNEKY-VLMRVNHQAIRNVKVGQLAEFASAVYPGK---VF 313 + EG V A M + ++ V V ++ I + VGQ A +P Sbjct: 342 KVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYL 401 Query: 314 SAEVEGI------VEATGESQGRLVALDDNVRQTTGQNL 346 +V+ I + G ++++++N T +N+ Sbjct: 402 VGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNI 440
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.012 Identities = 7/19 (36%), Positives = 15/19 (78%) Query: 257 AALFGISRQQLQRRLQKLG 275 A L G++R L++++++LG Sbjct: 456 ADLLGLNRNTLRKKIRELG 474
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 32.0 bits (72), Expect = 0.010 Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Query: 373 TTIFPHAPQNQWDKSVRTLANLVKMHKVELIAIGNGTASRETDKLAADLISQVKAELPRL 432 T I PQ +WDK V T +L K V + I G R+ D L + K L RL Sbjct: 502 TEIKKQIPQKEWDKVVNTPNSLEKQKGVTNLLIKYGI-ERKPDSTKGTLSNWQKQMLDRL 560 Query: 433 T---KIMVSEAGASVYSASELASEEFPNIDVSI 462 K G V +E +EEFP D I Sbjct: 561 NEAVKYTGYTGGDVVNHGTEQDNEEFPEKDNEI 593
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 98.4 bits (245), Expect = 7e-26 Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 3/137 (2%) Query: 6 SKILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGL 65 + ILV DDD +R +L + L GY VR +NA + R + + L+V D+++P E+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 SICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVM---R 122 + R+++ +P+++++A+ + I E GA DYLPKPF+ EL+ I + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 123 RQTPEVPGAPTQQEEEI 139 R+ ++ + Sbjct: 124 RRPSKLEDDSQDGMPLV 140
>PF06580#Sensor histidine kinase Length = 349 Score = 44.1 bits (104), Expect = 6e-07 Identities = 28/187 (14%), Positives = 64/187 (34%), Gaps = 44/187 (23%) Query: 272 IVNDIEDMDAIINQFISYIRQDQEGTRELEQINI-----LIQDVIQAESNREGD------ 320 I+ D ++ +R + Q+++ ++ +Q S + D Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNA-RQVSLADELTVVDSYLQLASIQFEDRLQFEN 244 Query: 321 -IESELVTCPIVPMQAIAVKRVISNLVENAYRYG------NGWVRINSQFNGKYVGFSVE 373 I ++ + PM ++ LVEN ++G G + + + V VE Sbjct: 245 QINPAIMDVQVPPM-------LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVE 297 Query: 374 DNGPGIDEEQIPKLFQPFTQGDTARGSVGSGLGLA-IIKRIVDRHQGKVILT-NRSEGGL 431 + G + +G GL + +R+ + + + + +G + Sbjct: 298 NTGSLALKNTKE----------------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKV 341 Query: 432 HAQVWLP 438 +A V +P Sbjct: 342 NAMVLIP 348
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.5 bits (115), Expect = 3e-09 Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 3 SKTLEYILNVSEQLIYKDGVIGFKFCTVAKEAGISTTSLYKFFGNKEDILVALASKSF 60 +T ++IL+V+ +L + GV +AK AG++ ++Y F +K D+ + S Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.4 bits (65), Expect = 0.023 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Query: 105 GTKTTYNVGERVIFAPSAIAERGTQTMGKAMTKAEIDYIVK--AFAEASRRAQESGFDGV 162 G YNV S T T KA +A + A AEA R+A+E Sbjct: 183 GLTAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQA 242 Query: 163 EIHAAHTYLINQF 175 I AA+TY + Sbjct: 243 AIRAANTYAMPAN 255
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 35.5 bits (82), Expect = 4e-04 Identities = 14/33 (42%), Positives = 20/33 (60%) Query: 354 LAGMTRNAAKALGIEDQVGVIEVGMTADFCMWN 386 +A T N A A G+ ++G +EVG AD +WN Sbjct: 406 IAKYTINPAIAHGLSHEIGSLEVGKRADLVLWN 438 Score = 32.4 bits (74), Expect = 0.004 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Query: 23 YGAITDAALAVQDGKIAWVGKRSD---LPEFDVF---ATPIYKGKGGWITPGLIDAHTHL 76 + I A + ++DG+IA +GK + P + T + G+G +T G +D+H H Sbjct: 80 HWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHF 139 Query: 77 V 77 + Sbjct: 140 I 140
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.027 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 5/82 (6%) Query: 116 SELALLEEQANQQRVMAESAQELEDQRGKIRLAKVRLALADAELIAHKKLKDNQVISTL- 174 ++ A+LE Q+ E+ EL + ++ + + A E +L N+++ L Sbjct: 250 AKHAVLE----QENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR 305 Query: 175 DLHKALVAWEQEDAMLQMELSR 196 + E A + Sbjct: 306 QTTDNIGLLTLELAKNEERQQA 327
>FLAGELLIN#Flagellin signature. Length = 507 Score = 29.6 bits (66), Expect = 0.036 Identities = 31/222 (13%), Positives = 65/222 (29%), Gaps = 12/222 (5%) Query: 312 VATAMNEMTATVVEVAKNANDAADAAVQTDTQSQAGLTVVNNTVQTIEGLAVGIERASQV 371 +A + + ++NAND A T+ L +NN +Q + L+V + Sbjct: 49 IANRFTSNIKGLTQASRNANDGISIAQTTE----GALNEINNNLQRVRELSVQATNGTNS 104 Query: 372 VKDLEDDSHQIGSILDVIKGIAEQT-----NLLALNAAIEAARAGEQGRGFAVVADEVRT 426 DL+ +I L+ I ++ QT +L+ + ++ G + ++ Sbjct: 105 DSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDV 164 Query: 427 LASRTQESTEEIQRMIEKLQGGAKLAADAMSDSRQYVDDSVNHARSAGEVLQSIAKAIAT 486 + + + D+ Y + + T Sbjct: 165 KSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDT--YAVGANKYRVDVNSGAVVTDTTAPT 222 Query: 487 ITDMNTQIATAAEEQSTVSEEINTNIVNISNAAEETAAGTMS 528 + D A + +T E NT + Sbjct: 223 VPDKVYVNAANG-QLTTDDAENNTAVDLFKTTKSTAGTAEAK 263
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 44.5 bits (105), Expect = 2e-07 Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 14/195 (7%) Query: 194 GVILTMTMIMFT----SAAIVRERERGNLEMLITTPIRSIELMLGKIIPYMFIGILQ--- 246 G++ T M T AA R + E ++ T +R +++LG++ L Sbjct: 72 GMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAG 131 Query: 247 -VIIILGLGYSVFNVPINGSLLQLAGATLLFIMASLTLGLVISTIAKSQLQSMQMTIFVL 305 ++ LGY+ + SLL L +A +LG+V++ +A S + V+ Sbjct: 132 IGVVAAALGYTQWL-----SLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVI 186 Query: 306 LPSILLSGFMFPYEGMPIEAQYIAEALPATHFMRLIRGVVLRDVEIIDMTYDVTWLAIFT 365 P + LSG +FP + +PI Q A LP +H + LIR ++L ++D+ V L I+ Sbjct: 187 TPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIML-GHPVVDVCQHVGALCIYI 245 Query: 366 VIGLIVASMRFKKNL 380 VI +++ ++ L Sbjct: 246 VIPFFLSTALLRRRL 260
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.1 bits (117), Expect = 1e-08 Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 7/163 (4%) Query: 42 SNEVVVALPVAQGSMVTKGTVLVQLDDTQQRAQVAKALADVAQSTANYEKLLKGARE-EE 100 N +V + V +G V KG VL++L A K + + Q+ + +R E Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 101 IAAARAKVSGAKATVQESEANYRRIASMAKDNLAS----KADLDRALASRDADTASLESA 156 K+ SE R+ S+ K+ ++ K + L + A+ ++ + Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 157 RENLRELVSGSREE--DIRFALANLQASEAVLLGEQKRLDDLT 197 L + D L ++ +L ++ + + Sbjct: 223 INRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 50.3 bits (120), Expect = 9e-10 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Query: 66 TSTVSVKEDFRVIMFGFDKDTLAPEQADKWRGIIAGLVQKQSP--SLYLVGDTSVEGSED 123 T ++K D ++F F+K TL PE + + L S+ ++G T GS+ Sbjct: 212 TKHFTLKSD---VLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDA 268 Query: 124 YNHALAKRRVDYITQLAVDQGFPASGIKEEVYFKQNHI 161 YN L++RR + + +G PA I + N + Sbjct: 269 YNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPV 306
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 253 bits (648), Expect = 1e-81 Identities = 95/428 (22%), Positives = 191/428 (44%), Gaps = 8/428 (1%) Query: 13 AKRANQLIFLVAALIVVTLVWASFAKLEEVVVGEGMVVPTLAVQQIESLDGGILKQVLVR 72 ++R + + + +V+ + + ++E V G + + ++I+ ++ I+K+++V+ Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113 Query: 73 EGQSVSAGEPLLLLDELRFASAYDEANIQAAALKRQKARLDAEISSVVIDDAASYWRDKV 132 EG+SV G+ LL L L + + + ++ R S+ + + Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSI-ELNKLPELKLPD 172 Query: 133 LIKPKAISALDVSVSTRSKAIYRSRLSQLSSQLEQSAQVIEQKVQAIEEGLITTQAQLSG 192 + +S +V R ++ + + S +Q Q +++K L + Sbjct: 173 EPYFQNVSEEEVL---RLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229 Query: 193 LQLVKQEIVMTRAAVREGAVAELELLKLERDEIRLKGELSASKANGRQLRAAQNQAEAEY 252 ++ K + + + + A+A+ +L+ E + EL K+ Q+ + A+ EY Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY 289 Query: 253 LTVALDFLSRAEAERNEVINELNALTESIKTLADRLARTQIVSPINGNVTNILVRSIGAV 312 V F + + + + + LT + +R + I +P++ V + V + G V Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349 Query: 313 VEPGESIMGIVPQDGALIIETRIAPKDIAFVHTGLQATVKFTAYDFVIYGGLKGEVIYVS 372 V E++M IVP+D L + + KDI F++ G A +K A+ + YG L G+V ++ Sbjct: 350 VTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409 Query: 373 PDAQQLDDGTTYFEAHIKTEENVL----NGWPIISGMQASTDILTGEKTVLNYWLKPLLR 428 DA + F I EEN L P+ SGM + +I TG ++V++Y L PL Sbjct: 410 LDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEE 469 Query: 429 AKANALRE 436 + +LRE Sbjct: 470 SVTESLRE 477
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 28.5 bits (63), Expect = 0.032 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 8/96 (8%) Query: 63 LLLRRYGGAVAVPDEVMQQFSAKIAPNKLSIARAAAELIKDHNRIIIDSGSTTSGLIGEL 122 + LR G + P+EV Q A N + + H + S SG Sbjct: 231 ICLRENGSTI-YPNEVSAQMQD--AANSVYAVHGLKRYVNFHFVLYTTEYSCPSG----- 282 Query: 123 NSKRGLLVMTNSLALANAIHDLENEPTLLMTGGTWD 158 ++K GL T SL +++ L+ GTWD Sbjct: 283 DAKEGLEGFTASLKSNPKAEGYDDQIYFLIRWGTWD 318
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 61.7 bits (149), Expect = 1e-13 Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 8/200 (4%) Query: 24 FSPLIAPETDAEQSEMSWQDFQQAFDKGYDDGVQKGHQAGFDAGVEEGRQSGHAAGFNQG 83 F P++ PE E ++ + + ++ + H+ G+ AG+ EGRQ GH G+ +G Sbjct: 22 FVPIVEPE------ETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEG 75 Query: 84 RIEGQQKGKDNIDDQLNSIIAPLGALKSLLEEGHSQQIAQQQTLILDLVRRVSLQVIRCE 143 +G ++G Q I A + L S + + + ++ + + QVI Sbjct: 76 LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQT 135 Query: 144 LTLQPQQILNLVEETLSALPDDPTEVKIHLEPSAVDKLKEL--AADKIKHWTLVADASIS 201 T+ ++ +++ L P + ++ + P + ++ ++ A + W L D ++ Sbjct: 136 PTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLH 195 Query: 202 AGGCRIVSATSDADASVETR 221 GGC++ + D DASV TR Sbjct: 196 PGGCKVSADEGDLDASVATR 215
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 174 bits (442), Expect = 6e-54 Identities = 81/334 (24%), Positives = 168/334 (50%), Gaps = 4/334 (1%) Query: 7 GIKMDNL---DQAAMLLLSMGEKGAAQVMAHLDRNDVQHLSHKMARLSSITQQEADAVLG 63 + + L +AA+LL+S+G + +++V +L + +++ L+ ++A+L +IT + D VL Sbjct: 9 ILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLL 68 Query: 64 RFFKRYQEQSGIARASRSYLQKTLDLALGDRVAKGLIDGIYGDEIKILVKRLEWVDPQLL 123 F + Q I + Y ++ L+ +LG + A +I+ + + + DP + Sbjct: 69 EFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANI 128 Query: 124 AREIANEHCQLQAVLLGLLPPENAALVLEGLPASGQDEVLVRIAQLGDLDREVVDELRQL 183 I EH Q A++L L P+ A+ +L LP Q V RIA + EVV E+ ++ Sbjct: 129 LNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERV 188 Query: 184 VERCMLMAMEKSHTQISGVRQVADILNRFN-GDREQLMEMLKLHDKQLASSVADNMFDFI 242 +E+ + + +T GV V +I+N + + ++E L+ D +LA + MF F Sbjct: 189 LEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFE 248 Query: 243 ILGRQKQETLQEIMSTVPSEVLAFALKGIDAELKTTLLTALPKRMSSAIETQVEAIGTIP 302 + ++Q ++ + + LA ALK +D ++ + + KR +S ++ +E +G Sbjct: 249 DIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTR 308 Query: 303 LSQAVAARKEIMEIAKQMADEGLIELQLFEEQVV 336 ++++I+ + +++ ++G I + E+ V Sbjct: 309 RKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDV 342
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 306 bits (784), Expect = 3e-99 Identities = 164/588 (27%), Positives = 270/588 (45%), Gaps = 70/588 (11%) Query: 9 SPAATNAGVNNPLNSLKEKWQQYNRGDRQVVILAVLAIVAACVIVLMLWSASQGYRPLYG 68 S A+ A PL W R + ++ ++ + A V+ ++LW+ + YR L+ Sbjct: 1 SATASTATQPKPLE-----WLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFS 55 Query: 69 NQEGVETSQIIEVLEAEGISYRIDANSGLILVTEDKLGPARMLLAARGVKAKVPSGMESL 128 N + I+ L I YR SG I V DK+ R+ LA +G+ G E L Sbjct: 56 NLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELL 115 Query: 129 ENSNIGTSQFMEQAKYRYSLEGELSRTIMALKAVKTARVHLAIPKKTLFIRQQPELPTAS 188 + G SQF EQ Y+ +LEGEL+RTI L VK+ARVHLA+PK +LF+R+Q + P+AS Sbjct: 116 DQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQ-KSPSAS 174 Query: 189 VMLELYAGSNIQPEQIESIVNLVAGSVTGMTPDRVQVVDQEGNHLSSSISVNKDITQARD 248 V + L G + QI ++V+LV+ +V G+ P V +VDQ G+ L+ S + +D D Sbjct: 175 VTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRD---LND 231 Query: 249 RQLKYTQELEQSLIDRASSMLLPILGRDHFEVQVAANVNFNQVEETKESLDP------LA 302 QLK+ ++E + R ++L PI+G + QV A ++F E+T+E P Sbjct: 232 AQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKAT 291 Query: 303 VVTKENLTSNETNSDMALGIPGALSNQPPAAEADESNAR--------------------- 341 + +++ S + + G+PGALSNQP Sbjct: 292 LRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNS 351 Query: 342 ---RNLNSQESRQFDTGRSVRHTRYQQMQLENLSVSVLINKQSAGETG---WTQTQLDQL 395 R+ E+ ++ R++RHT+ +E LSV+V++N ++ + T Q+ Q+ Sbjct: 352 AGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQI 411 Query: 396 SSMVQDAIGFSAARGDQFSINSFDFAP--TQIAEFEPMPWWQGESYQTYLRYFIGALLGL 453 + ++A+GFS RGD ++ + F+ E +P+WQ +S+ L LL L Sbjct: 412 EDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGE---LPFWQQQSFIDQLLAAGRWLLVL 468 Query: 454 AMIFFVLRPLVKHLTKTVEHNLKSIDEPAQPSLPPAQATVTKLEG-GNNAQAIADQLIGQ 512 + + + R V+ K+ E AQ +A +L Q A+Q +G Sbjct: 469 VVAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGA 528 Query: 513 NQKTGDLNWSGDASLPEPSSPLAVKMEHLSLLANQEPARVAEVIAHWI 560 V + + +++ +P VA VI W+ Sbjct: 529 E----------------------VMSQRIREMSDNDPRVVALVIRQWM 554
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 50.0 bits (119), Expect = 2e-11 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 41 PSFTELMKNKVAAVNTDQNASAALMRAVDTGQSG-DLVGAMVASQKAGLAFSTMIQIRNR 99 SF + + ++ Q A+ G+ G L M QKA ++ IQ+RN+ Sbjct: 31 ISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNK 90 Query: 100 LVQAFDEVMKMPV 112 LV A+ EVM M V Sbjct: 91 LVAAYQEVMSMQV 103
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 378 bits (972), Expect = e-130 Identities = 144/401 (35%), Positives = 214/401 (53%), Gaps = 47/401 (11%) Query: 74 ELASIAMQCGVQDYLLLPIDAEQLCSLLQR--------LRRLELPNNE---LICAAPVSR 122 A A + G DYL P D +L ++ R +LE + + L+ + + Sbjct: 88 MTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQ 147 Query: 123 QLLMLAHRAASTEATVLLTGESGTGKEPLARYIHRHSNRADKAFIAINCAAIPESILESI 182 ++ + R T+ T+++TGESGTGKE +AR +H + R + F+AIN AAIP ++ES Sbjct: 148 EIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESE 207 Query: 183 LFGHIKGAFTGATTDQPGKFELANGGTLLLDEIGEMPLLLQAKLLRVLQEREVERLGSHR 242 LFGH KGAFTGA T G+FE A GGTL LDEIG+MP+ Q +LLRVLQ+ E +G Sbjct: 208 LFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRT 267 Query: 243 SIALDIRVIAATNKDLRQAVQDGKFREDLFYRLDVLPIKILPLRQRREDILPIAEHFLQR 302 I D+R++AATNKDL+Q++ G FREDL+YRL+V+P+++ PLR R EDI + HF+Q+ Sbjct: 268 PIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQ 327 Query: 303 YKILAANQQCYFSEQARNLLLSHNWPGNVRELENTIQRALVMRRGQALQAEDLGLENQDG 362 + + + F ++A L+ +H WPGNVRELEN ++R + + E + E + Sbjct: 328 AEKEGLDVKR-FDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSE 386 Query: 363 ------------------SILVEQNELG--------------LKASKRQAEFQYIIDTLK 390 S VE+N + E+ I+ L Sbjct: 387 IPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALT 446 Query: 391 RHNGHRIQTAEALGMTTRALRYKLAQMREEGIDIERLLAQA 431 G++I+ A+ LG+ LR K +RE G+ + R A Sbjct: 447 ATRGNQIKAADLLGLNRNTLRKK---IRELGVSVYRSSRSA 484
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 65.7 bits (160), Expect = 2e-14 Identities = 32/111 (28%), Positives = 43/111 (38%), Gaps = 10/111 (9%) Query: 180 EFLFAPSSSLLNAAHEQDLYAVYRYL-QADPSIVEVLVDGHADASGDHLANLVLSKERAD 238 + LF + + L + L +Y L DP V+V G+ D G N LS+ RA Sbjct: 220 DVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQ 279 Query: 239 EVVSRLIELGVSPKMIQTRHHGTRTPVASNNSTQGR---------ELNRRV 280 VV LI G+ I R G PV N + +RRV Sbjct: 280 SVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRV 330
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 31.4 bits (71), Expect = 0.004 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 206 DPALSEKLAHRLRQIPLRVLLELGHQSTSLTSLQNLAVGDVLPMN-LHSRCPVT--VGKR 262 L +L + + V+ E+G S+ + L VGD++ ++ H P +G R Sbjct: 243 TTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNR 302 Query: 263 PLFYATV 269 F Sbjct: 303 KKFLCQP 309
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 81.1 bits (200), Expect = 4e-23 Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 16/121 (13%) Query: 4 HNILQDEDFLLDD---EFFTEEESHQSKSQAK-------------PVKDMSFFHQLPVQV 47 +N + LDD + E+++ +KS A ++D+ +PV++ Sbjct: 5 NNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKL 64 Query: 48 TLELASAEMSLGELTKMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGRYGVRLLE 107 T+EL M++ EL ++ +G VVALD + GEPLDI +NG L+ +GEVV V +YGVR+ + Sbjct: 65 TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124 Query: 108 V 108 + Sbjct: 125 I 125
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 243 bits (623), Expect = 1e-83 Identities = 115/238 (48%), Positives = 165/238 (69%) Query: 4 VLLILLLGFSSTAYANDGLTLFTLNDGAESESVSVKLEILALMTVLSFLPAMLMMLTSFT 63 + +LL + + + +S S+ ++ L +T L+F+PA+L+M+TSFT Sbjct: 6 SVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFT 65 Query: 64 RIIVVLGILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGEEIYEKAFLPYDQGIIELPE 123 RII+V G+LR ALG +PPN+VL+G+AL +T FIM PV ++IY A+ P+ + I + E Sbjct: 66 RIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQE 125 Query: 124 AVERGEKPLRQFMLAQTRETDLEQMLKIADEPTTLTAEEIPFFVLMPAYVLSELKTAFQI 183 A+E+G +PLR+FML QTRE DL ++A+ E +P +L+PAYV SELKTAFQI Sbjct: 126 ALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQI 185 Query: 184 GFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVSTLVASY 241 GF +F+PFL+IDLV+ASVLM++GMMM+ P I+LPFKLM+FVLVDGW + V +L S+ Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 47.8 bits (114), Expect = 5e-11 Identities = 20/80 (25%), Positives = 41/80 (51%) Query: 3 VNELTSFFADAVFLVIAMVGVLVLPSLLVGLVVAVFQAATQVNEQTLSFLPRLVITLLMV 62 +++L A++LV+ + G + + ++GL+V +FQ TQ+ EQTL F +L+ L + Sbjct: 1 MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL 60 Query: 63 LFAGEWMLMQMSDLFQRLFL 82 W + +++ Sbjct: 61 FLLSGWYGEVLLSYGRQVIF 80
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 121 bits (306), Expect = 1e-35 Identities = 75/256 (29%), Positives = 133/256 (51%), Gaps = 2/256 (0%) Query: 1 MLSLTSTELSTFIGTFWWPFCRIMGAFMVMPFLSSTYIPVTVRILLALTLSALIAPMLPP 60 ML +TS + +++ ++WP R++ P LS +P V++ LA+ ++ IAP LP Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 LPEVDAISIQALLLAIEQLLVGFMMALFLTIMLYVMTQLGEMLSMQMGLAMAVMNDPSSG 120 S AL LA++Q+L+G + + + GE++ +QMGL+ A DP+S Sbjct: 61 NDVPV-FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 GSHPILGQWFLLYGTLVFLVLDGHLVAIGVLVDSFRLWPVG-MGVFDLPLMGLIGRISWL 179 + P+L + + L+FL +GHL I +LVD+F P+G + + L S + Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 180 FAVSFMLAIPSILAMLMVNITFGVLSRSAPSLNVFALGFPMSMLMGLLCVFFSFSGLPSR 239 F MLA+P I +L +N+ G+L+R AP L++F +GFP+++ +G+ + + Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 Query: 240 YSDLCLDALSAMYQFI 255 L + + + I Sbjct: 240 CEHLFSEIFNLLADII 255
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 314 bits (805), Expect = e-107 Identities = 113/349 (32%), Positives = 184/349 (52%), Gaps = 6/349 (1%) Query: 9 KTEDATPKKLKQAREQGQVPRSKDFTSAALVMGCALLLTTSAGEIGARVAQLARTNMQFT 68 KTE TPKK++ AR++GQV +SK+ S AL++ + +L + ++L M Sbjct: 5 KTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKL----MLIP 60 Query: 69 KAQ--LDEPGMMTRHLGQALLEILYILAPLFILVALIAMIAGAMPGGWIFNFGNAGFKYS 126 Q L ++ + LLE Y+ PL + AL+A+ + + G++ + Sbjct: 61 AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 127 RIDPIAGLGRMVSIKSLAELIKSVLKIVLLGGIMLVFLDKNLQTLLTFSQLPIDEAITRV 186 +I+PI G R+ SIKSL E +KS+LK+VLL ++ + + NL TLL I+ + Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 187 IDMLSLGVFYLGLGLLFIACIDLPYQYWQHHNELKMSLQEVKDEHKQQEGKPEIKAKIRQ 246 +L + +G + I+ D ++Y+Q+ ELKMS E+K E+K+ EG PEIK+K RQ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 247 MQQRISRSRADVSIPNADVLLVNPTHYAVALKYDANKADAPYVLTKGTDELALYMREVAK 306 Q I ++ + V++ NPTH A+ + Y + P V K TD +R++A+ Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 307 RHGVEILELPPLTRAIYYSTNIEQQIPASLFVAIAHVLTYVMQIRAARQ 355 GV IL+ PL RA+Y+ ++ IPA A A VL ++ + +Q Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQ 349
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 196 bits (499), Expect = 1e-63 Identities = 75/284 (26%), Positives = 134/284 (47%), Gaps = 32/284 (11%) Query: 17 KPVSTAIFSIGLLIVLYLLAQITWKL-VPDDSTQARWVPTPVSSNAAGQVNILNLQQLSL 75 + +F + +L+ LA I W++ +PD++ + TP + L +L Sbjct: 12 SVIRRILFYLLMLLFCQQLAMIFWRIGLPDNAPVSSVQITPAQARQQPVT----LNDFTL 67 Query: 76 FGKPDAAGNKPKAAAIEEIITDAPKTSLSIQLTGVVASTTEQKGLAVIASSGSQDTYGLG 135 FG A +++ P ++L++ LTGV+A + + +A+I+ Q + G+ Sbjct: 68 FGVSPEKNKAGALDA--SQMSNLPPSTLNLSLTGVMAGDDDSRSIAIISKDNEQFSRGVN 125 Query: 136 DKIKGTSASLKEVYADRIIITNSGRYETLMLDGLEYNTNGTANQQLQKAKSVSKGKTIDN 195 +++ G +A + + DR+++ GRYE L L E + G ++ Sbjct: 126 EEVPGYNAKIVSIRPDRVVLQYQGRYEVLGLYSQEDS-----------GSDGVPGAQVN- 173 Query: 196 RNNRAVAAELSQSRDEILADPSKITDYLSISPVKSGGELAGYRLNPGKDRELFKQAGFRA 255 E Q R + ++DY+S SP+ + +L GYRLNPG + F + G + Sbjct: 174 --------EQLQQRA-----STTMSDYVSFSPIMNDNKLQGYRLNPGPKSDSFYRVGLQD 220 Query: 256 NDLAKSINGYDLTDMGQALEVMAQLPEMTEVALMVERDGQLIEI 299 ND+A ++NG DL D QA + M ++ ++ L VERDGQ +I Sbjct: 221 NDMAVALNGLDLRDAEQAKKAMERMADVHNFTLTVERDGQRQDI 264
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 610 bits (1574), Expect = 0.0 Identities = 333/677 (49%), Positives = 448/677 (66%), Gaps = 29/677 (4%) Query: 6 IRRRLIAGMVMGASLLAPQLAWSEQYAANFKGTDIQEFINIVGKNLNRTIIVDPTVRGKI 65 IR + ++ A L P A +E+++A+FKGTDIQEFIN V KNLN+T+I+DP+VRG I Sbjct: 7 IRSFSLTLLIFAALLFRP--AAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTI 64 Query: 66 NVRSYDLLNDEQYYQFFLNVLQVYGYAVVEMDNNIIKVIKDKDAKTASIRVADDDAPGLG 125 VRSYD+LN+EQYYQFFL+VL VYG+AV+ M+N ++KV++ KDAKTA++ VA D APG+G Sbjct: 65 TVRSYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIG 124 Query: 126 DEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVVNYDPSNVLMISGRAAVVNKLVEIVR 185 DE+VTR+V L N A+ LAPLLRQLNDNAG G+VV+Y+PSNVL+++GRAAV+ +L+ IV Sbjct: 125 DEVVTRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVE 184 Query: 186 RVDKQGDTAVEVVKLEYASAGEIVRIIDTLYRSTANQAQMPGQAPKVVADERTNAVVVSG 245 RVD GD +V V L +ASA ++V+++ L + T+ A VVADERTNAV+VSG Sbjct: 185 RVDNAGDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSG 244 Query: 246 DEKSRERVVKLIKNLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAEQLVDDKGTSQGGG 305 + SR+R++ +IK LD +QA+ GNTKV YL+YAKA DLVEVLTG + + +K ++ Sbjct: 245 EPNSRQRIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVA 304 Query: 306 SKRRNEINIMAHNDTNALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVGEGDDVG 365 + +N I I AH TNAL+++A PD M +E VI QLDIRR QVLVEAII EV + D + Sbjct: 305 ALDKN-IIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLN 363 Query: 366 FGVQWATEAGGGTQFNNLGPTIGEIGAGVWQAQGEEGSTVCNDGTCTENPDTRGDITLLA 425 G+QWA + G TQF N G I AG + DGT + + LA Sbjct: 364 LGIQWANKNAGMTQFTNSGLPISTAIAG--------ANQYNKDGTVS---------SSLA 406 Query: 426 QALGKVNGMAWGVAMGDFAALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTG 485 AL NG+A G G++A L+ A+SS TK+++LATPSI TLDN EA+F VG EVP+LTG Sbjct: 407 SALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTG 466 Query: 486 SQNSSNGNSNPFQTVERKEVGVKLKVVPQINEGSSVKLTIEQEVSGINGK-----TGVDV 540 SQ +S N F TVERK VG+KLKV PQINEG SV L IEQEVS + + + Sbjct: 467 SQTTSGD--NIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGA 524 Query: 541 TFATRRLTTTVMADSGQIVVLGGLIKEEVQESVQKVPFLGDIPIIGHLFKSSSSGKKKTN 600 TF TR + V+ SG+ VV+GGL+ + V ++ KVP LGDIP+IG LF+S+S K N Sbjct: 525 TFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRN 584 Query: 601 LMVFIKPTIIRDGMTMEGIAGRKYNYFRALQLEQQ-ERGVNLMPNTDVPILEEWNQADYL 659 LM+FI+PT+IRD + +Y F Q +Q+ + + M N D+ + Q Sbjct: 585 LMLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKENNDAMLNQDLLEIYP-RQDTAA 643 Query: 660 PPEVNDVLNRYKEGKGL 676 +V+ ++ + G L Sbjct: 644 FRQVSAAIDAFNLGGNL 660
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 502 bits (1293), Expect = e-180 Identities = 230/407 (56%), Positives = 302/407 (74%), Gaps = 1/407 (0%) Query: 1 MPAFEYKALDKTGKQKKGVVEADTARHARTQLREQRLMPLEITPVVEKESKTKAAGFSF- 59 M + Y+ALD GK+ +G EAD+AR AR LRE+ L+PL + + K+ + G S Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 60 LKRGISTAELALITRQIATLVAAGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSL 119 K +ST++LAL+TRQ+ATLVAA +P+EEAL AV +Q EK L+ ++ AVRS+V+EG+SL Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 120 ADSMAEFPHIFDELYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLT 179 AD+M FP F+ LY AMVA+GE SGHL+ VLNRLADYTE+RQQ++S++ QAMIYP VLT Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 180 VVAIGVIAILLAAVVPQVVGQFEHMGQELPWTTELLIASSDFIRDYGLIVLAVIVGLFFI 239 VVAI V++ILL+ VVP+VV QF HM Q LP +T +L+ SD +R +G +L ++ F Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 240 AKRLLVSPKNRMKYDSMLLRLPVISKVSKSLNTARFARTLSILTASSVPLLDAMRIASDV 299 + +L K R+ + LL LP+I ++++ LNTAR+ARTLSIL AS+VPLL AMRI+ DV Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 300 LINVKVKAAVEDATLRVREGTSLGTALANTKLFPPMMLYMITSGEKSGQLEQMLERAADN 359 + N + + AT VREG SL AL T LFPPMM +MI SGE+SG+L+ MLERAADN Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 360 QDRDFESNVTIALGVFEPMLVVSMAAVVLFIVLAILQPILALNNMIS 406 QDR+F S +T+ALG+FEP+LVVSMAAVVLFIVLAILQPIL LN ++S Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLMS 407
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 236 bits (603), Expect = 1e-83 Identities = 100/144 (69%), Positives = 122/144 (84%) Query: 1 MQARNKQKGFTLLEVMVVIVILGILASMVVPNLMGNKDKADQQKAVSDIVALENALDMYK 60 M+A +KQ+GFTLLE+MVVIVI+G+LAS+VVPNLMGNK+KAD+QKAVSDIVALENALDMYK Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK 60 Query: 61 LDNSVYPTTEQGLEALVQKPTISPEPRNYRADGYVKRLPQDPWRNDYLLLSPGENGKLDI 120 LDN YPTT QGLE+LV+ PT+ P NY +GY+KRLP DPW NDY+L++PGE+G D+ Sbjct: 61 LDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDL 120 Query: 121 FSSGPDGQAGTEDDIGNWNLQNFQ 144 S+GPDG+ GTEDDI NW L + Sbjct: 121 LSAGPDGEMGTEDDITNWGLSKKK 144
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 83.5 bits (206), Expect = 2e-22 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 39/170 (22%) Query: 23 RQTGFTLMEVLLVVLLMGLAATAVTLGMGGASKEKALERTAQQFMMSTEMVLDETVLSGH 82 RQ GFTL+E++L++LLMG++A V L + + A + T +F V + +G Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQ-TLARFEAQLRFVQQRGLQTGQ 60 Query: 83 FVGIVIEDNSYKYVYYDEG---------------KWKPLEQDRLLAERQMEPGVEMVLVL 127 F G+ + + ++++ + +W PL R+ + Sbjct: 61 FFGVSVHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAGRVATSGS----------I 110 Query: 128 DGLPLVQDDEEQDSWFDEPLIEKSADEKKKFPEPQIMLFPSGEMSAFELS 177 G L + ++W P +++FP GEM+ F L+ Sbjct: 111 AGGKLNLAFAQGEAW-------------TPGDNPDVLIFPGGEMTPFRLT 147
>PilS_PF08805#PilS N terminal Length = 185 Score = 30.7 bits (69), Expect = 9e-04 Identities = 13/54 (24%), Positives = 23/54 (42%) Query: 3 RRTDQTGMTLLEVIVALAVFSIAAVSITKSLGEQMANMPILEERTMAQWVAHNK 56 ++ G TL+EV++ + V + A S K +N+ E+ V N Sbjct: 21 KKEQDKGATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQSSNEQNNVLTVIANM 74
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 37.2 bits (86), Expect = 1e-05 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 7/55 (12%) Query: 3 LRLTKSQRGFTLLEMLIAIAIFAMLGLAANTVLSTVMKNDTATRDFAAKLKAMQQ 57 +R T QRGFTLLE+++ I I +G+ A+ V+ +M N ++ A K KA+ Sbjct: 1 MRATDKQRGFTLLEIMVVIVI---IGVLASLVVPNLMGN----KEKADKQKAVSD 48
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 799 bits (2064), Expect = 0.0 Identities = 310/1029 (30%), Positives = 534/1029 (51%), Gaps = 34/1029 (3%) Query: 5 DIFIRRPVLAASISFLILLLGFYALKSMQVREYPEMTNTVVTISTSYYGADSNLIQGFIT 64 + FIRRP+ A ++ ++++ G A+ + V +YP + V++S +Y GAD+ +Q +T Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 QPLEQALAQADNVDFMTSDSF-LGSSKITVYMKLNTDPNGALADILAKVNSVRSQLPKEA 123 Q +EQ + DN+ +M+S S GS IT+ + TDP+ A + K+ LP+E Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 EDPTVEMSTGSQTSALYISFYSDQINSSQ--ITDYLERVVKPELFTIDGVAKVNLYGGIK 181 + + + S + + F SD ++Q I+DY+ VK L ++GV V L+G + Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-Q 181 Query: 182 YAMRIWLDPARMGAFNLSSTDVMSVLQANNYQSAVGQTNNTFTL------LNGTADTQVA 235 YAMRIWLD + + L+ DV++ L+ N Q A GQ T L + A T+ Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 TVAELEKLVI-GSKNGLVIRLGDIATVNLEKSHDVYRALADGQEAVVVGLDVTPTANPLV 294 E K+ + + +G V+RL D+A V L + A +G+ A +G+ + AN L Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 VAADARAMMPQIERNLPVTMKTRILYDSSLAIDESINEVIKTIGEAALIVIVVITLFLGS 354 A +A + +++ P MK YD++ + SI+EV+KT+ EA ++V +V+ LFL + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 LRAVIIPIVTIPLSLIGVAIIMQMFGFTLNLMTLLAMVLAIGLVVDDAIVVVENVDRHIK 414 +RA +IP + +P+ L+G I+ FG+++N +T+ MVLAIGL+VDDAIVVVENV+R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 415 LGETPFRAAII-GTREIAVPVISMTITLAAVYAPIALMGGVTGSLFKEFALTLAGAVFIS 473 + P + A +I ++ + + L+AV+ P+A GG TG+++++F++T+ A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 GIVALTLSPMMCSKILKA-----HSEPNRFERSVENFLEGLTSRYNRMLTAVLDKRPVII 528 +VAL L+P +C+ +LK H F + + Y + +L + Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 529 GFAIIVFASLPVMFSFIPSELAPNEDKSVVMMMGTAPSSANLDYIQANMTLVTDMISAQP 588 ++ A + V+F +PS P ED+ V + M P+ A + Q + VTD Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 589 EAAASLAF----VGVPNANQAFGIA--PLVPWSERDKSQKQMQEFFGK---EVKNVPGMA 639 +A F Q G+A L PW ER+ + + + E+ + Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 640 VTTFQMPE--LPGASSGLPIQFVITSSTSFESLFQIGSGVLEQVQKSPLFVYS-EVNLKF 696 V F MP G ++G + + + ++L Q + +L + P + S N Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 697 DSGSMKIHIKRDVAGAYGITMQDIGLTLTTMMSDGYVNRINLDGRSYEVIPQVERKLRAN 756 D+ K+ + ++ A A G+++ DI T++T + YVN GR ++ Q + K R Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 757 PEALAGYYLTAADGRSVPLASLVDIEIVSEPRSLPHFNQMNAITVGGVAAPGVAIGDAIA 816 PE + Y+ +A+G VP ++ V L +N + ++ + G AAPG + GDA+A Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 817 FLKNIGDNELPKGYSYDFLGEARQYVTEGSALYATFGLALAIIFLVLASQFESLKDPLVI 876 ++N+ ++LP G YD+ G + Q G+ A ++ ++FL LA+ +ES P+ + Sbjct: 842 LMENL-ASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 877 LVSVPLAISGALVALGWTHVFGLSSMNIYTQVGLITLVGLITKHGILMCEVAKEEQLHNG 936 ++ VPL I G L+A + ++Y VGL+T +GL K+ IL+ E AK+ G Sbjct: 901 MLVVPLGIVGVLLAATLFN----QKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEG 956 Query: 937 LSRADAIKHAATIRLRPILMTTAAMIAGLIPLLFASGAGAVARFNIGLVIVSGLAIGTVF 996 +A A +RLRPILMT+ A I G++PL ++GAG+ A+ +G+ ++ G+ T+ Sbjct: 957 KGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLL 1016 Query: 997 TLFVLPVIY 1005 +F +PV + Sbjct: 1017 AIFFVPVFF 1025 Score = 76.0 bits (187), Expect = 5e-16 Identities = 72/378 (19%), Positives = 140/378 (37%), Gaps = 20/378 (5%) Query: 651 ASSGLPIQFVITSSTSFESLFQIGSGVLEQVQKSPLFVYS---EVNLKFDSGSMKIHIKR 707 +SS + S + I V V K L + +V L +M+I + Sbjct: 132 SSSSYLMVAGFVSDNPGTTQDDISDYVASNV-KDTLSRLNGVGDVQLFGAQYAMRIWLDA 190 Query: 708 DVAGAYGITMQDIGLTLTTMMSDGYVNRIN----LDGRSYEVIPQVERKLRANPEALAGY 763 D+ Y +T D+ L ++ L G+ + + + E Sbjct: 191 DLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVT 250 Query: 764 YLTAADGRSVPLASLVDIEI-VSEPRSLPHFNQMNAITVGGVAAPG---VAIGDAI-AFL 818 +DG V L + +E+ + N A +G A G + AI A L Sbjct: 251 LRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKL 310 Query: 819 KNIGDNELPKGYSYDFLGEARQYVTEG-SALYATFGLALAIIFLVLASQFESLKDPLVIL 877 + P+G + + +V + T A+ ++FLV+ ++++ L+ Sbjct: 311 AELQPF-FPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPT 369 Query: 878 VSVPLAISGALVALGWTHVFGLSSMNIYTQVGLITLVGLITKHGILMCEVAKEEQLHNGL 937 ++VP+ + G L FG S +N T G++ +GL+ I++ E + + + L Sbjct: 370 IAVPVVLLGTFAIL---AAFGYS-INTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKL 425 Query: 938 SRADAIKHAATIRLRPILMTTAAMIAGLIPLLFASGAGAVARFNIGLVIVSGLAIGTVFT 997 +A + + + ++ + A IP+ F G+ + IVS +A+ + Sbjct: 426 PPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVA 485 Query: 998 LFVLPVI-YTYLAEQHEP 1014 L + P + T L Sbjct: 486 LILTPALCATLLKPVSAE 503
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.0 bits (104), Expect = 6e-07 Identities = 34/213 (15%), Positives = 77/213 (36%), Gaps = 24/213 (11%) Query: 78 GVVSAIRFENGSQVQAGQMLVELDSKVEKANLKSKQVQLPAAEADYKRLSKLYKQNSISK 137 ++ + + + + +V K+ L+ + ++ +A+ +Y+ +++L+K + K Sbjct: 247 QAIAKHAVL---EQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK 303 Query: 138 QDLDNSQSKYLALMADIESLSATIDRREIKAAFTGLVGIRNVN-LGEYLQTGT---DIVR 193 L + L ++ I+A + V V+ G + T IV Sbjct: 304 --LRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVP 361 Query: 194 LEDISTMKIRFTIPQTQLPRIETGQVVHVHVDAYP---TEPFEGTISAIEP--------A 242 +D T+++ + + I GQ + V+A+P G + I Sbjct: 362 EDD--TLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLG 419 Query: 243 VFYQSGLIQV--QALIPNSHGKLRSGMFAKVDI 273 + + + N + L SGM +I Sbjct: 420 LVFNVIISIEENCLSTGNKNIPLSSGMAVTAEI 452 Score = 43.7 bits (103), Expect = 8e-07 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 72 IANEVAGVVSAIRFENGSQVQAGQMLVELDSKVEKANLKSKQVQLPAAEADYKRLSKLYK 131 I +V I + G V+ G +L++L + +A+ Q L A + R L + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 132 Q-NSISKQDLDNSQSKYLALMADIESLSATIDRREIKAAF 170 +L Y +++ E L T +E + + Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTW 198
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 70.0 bits (171), Expect = 4e-17 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 9/146 (6%) Query: 19 ILRAAEKIIATGGIQGLSMQQVATEAGVAAGTIYRYFKDKNELILELRKDVLSQVAGAI- 77 IL A ++ + G+ S+ ++A AGV G IY +FKDK++L E+ + S + Sbjct: 16 ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELEL 75 Query: 78 -LADHDLGTLEQRFKRIWMKMHNYGKQRTSTNLSYEQYAHLPES------NTNEIRQLEM 130 G + I + + L E H E R L + Sbjct: 76 EYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCL 135 Query: 131 ELFAPLQQLFEEGIKQGLIQP-LNPR 155 E + ++Q + I+ ++ L R Sbjct: 136 ESYDRIEQTLKHCIEAKMLPADLMTR 161
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 56.7 bits (137), Expect = 3e-11 Identities = 71/359 (19%), Positives = 127/359 (35%), Gaps = 43/359 (11%) Query: 1 MKKTLISASVASVLTLASFGALADGPGFYGRLD----LSATHSDTGATTQNGKEGAILEN 56 MKK+LI+ ++A++ A YG + S + + GA + + G + + Sbjct: 1 MKKSLIALTLAALPVAAMADV-----TLYGTIKAGVETSRSVAHNGAQAASVETGTGIVD 55 Query: 57 NFSHLGVKGSENIADGYDIVYQMEFGVDNTSNSNKTFTTRNTFLGLKTNAGTVLVGRNDH 116 S +G KG E++ +G ++Q+E + + ++ + R +F+GLK G + VGR + Sbjct: 56 LGSKIGFKGQEDLGNGLKAIWQVEQKA-SIAGTDSGWGNRQSFIGLKGGFGKLRVGRLNS 114 Query: 117 VFKQT------EGGADVFGNTNADIDRLVAGQDRVGDGIWYYSPKIAGLVTLNATYLMEG 170 V K T + +D G +A + + Y SP+ AGL + Y + Sbjct: 115 VLKDTGDINPWDSKSDYLGVNK------IAEPEARLISVRYDSPEFAGLSG-SVQYALND 167 Query: 171 NYTDEANKTSYDQ--QYALSATIGDKKLKAQNYYVAAAYNTIKGIDAYRGVAQVKLGDF- 227 N N SY Y + ++ I+ +R V+ Sbjct: 168 N-AGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDNDALY 226 Query: 228 -KVAGIFQNTESQTTDQEGNSYF-VNVVYNLNGVNLKAEYGKDEGGFGKYYKNITGGYEE 285 VA Q+ + + NS V N+ Y + G + Sbjct: 227 ASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVS---------YAHGFKGSFD 277 Query: 286 GVTSDINVQVITVGADYKISKSTMVYGHYAMYEGDHKVGTATKDLEDDNVFTVGVRYNF 344 + + + VGA+Y SK T + VG+R+ F Sbjct: 278 ATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFV-----STAGGVGLRHKF 331
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 59.0 bits (143), Expect = 6e-12 Identities = 72/365 (19%), Positives = 127/365 (34%), Gaps = 45/365 (12%) Query: 1 MKKTVLSATIISALAATSFTALADGPSFYGRADLAITNSDM----GIATQNQKSGTIIEN 56 MKK++++ T+ + A + YG + S G + ++GT I + Sbjct: 1 MKKSLIALTLAALPVAAMADV-----TLYGTIKAGVETSRSVAHNGAQAASVETGTGIVD 55 Query: 57 NFSWLGVKGTEAINSDLEVVYQMEFGVSNFDNSNNTFAARNTFLGLKSATAGTILVGRND 116 S +G KG E + + L+ ++Q+E S +++ + R +F+GLK G + VGR + Sbjct: 56 LGSKIGFKGQEDLGNGLKAIWQVEQKASI-AGTDSGWGNRQSFIGLK-GGFGKLRVGRLN 113 Query: 117 TVFK------ASEGGFDIFGNTNSDIDLLAAGQSRSADGFSYYSPKIADLVTLNATYLMD 170 +V K + D G ++ +A ++R Y SP+ A L + Y ++ Sbjct: 114 SVLKDTGDINPWDSKSDYLG-----VNKIAEPEARLI-SVRYDSPEFAGLSG-SVQYALN 166 Query: 171 DNYDQVNASGEEVYTDNMYALSATVGDKGLKAQNYYVSAAYNDGIDNVKAYRGVAQVKLG 230 DN + N+ Y + G Q ++ +NV + Sbjct: 167 DNAGRHNSES--------YHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHR--- 215 Query: 231 QVILGGFYQNSEHVDSKYSNLEGDTYFVNAAYVMGDLKLKAMYGSDDSGLGKYVSRYVGD 290 L Y N S + ++ A + VS Y Sbjct: 216 ---LVSGYDNDALYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVS-YA-H 270 Query: 291 TNGATLETVSDVDL-QQFSVGADYRLSKNTLVYGHYTKYDGDMKLSGFTHDLSDDIFTVG 349 + + + + Q VGA+Y SK T S F VG Sbjct: 271 GFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFV----STAGGVG 326 Query: 350 MRFDF 354 +R F Sbjct: 327 LRHKF 331
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 28.7 bits (64), Expect = 0.032 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 98 VNEVEDFITPENLSEYFQGKKQGGNIDYVVDCIDSVKAKT 137 +N V++F+ ++ F I Y+ I+++ KT Sbjct: 741 MNRVDNFLNKASIC-VFVEDIYPKFISYMEKYINNINIKT 779
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 28.7 bits (64), Expect = 0.039 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 106 KDIERQTPTTPIPEKRQFSVVGLASLGFKLLKSAKVIKVLLAGASVAAYSWL-FSFQFAL 164 K T P + F VG + +L+ +A V +L A + Y W+ F +QFAL Sbjct: 123 KVETALTAVDPALKITSFESVG-PKVSGELVWTA-VWSLLAATVVIMFYIWVRFEWQFAL 180 Query: 165 ALIACLVF 172 + LV Sbjct: 181 GAVVALVH 188
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 74.5 bits (183), Expect = 2e-16 Identities = 52/150 (34%), Positives = 70/150 (46%), Gaps = 17/150 (11%) Query: 41 VDDGKSTLIGRLLHDSAQIYEDQLASLKSDSAKLGTTGEEVDLALLVDGLQAEREQGITI 100 VD GK+TL LL++S I E S GTT D ER++GITI Sbjct: 12 VDAGKTTLTESLLYNSGAITE-------LGSVDKGTT--------RTDNTLLERQRGITI 56 Query: 101 DVAYRYFSSDKRKFIIADTPGHEQYTRNMATGASTCDLAVLLVDARYGVQTQTRRHAFIA 160 F + K I DTPGH + + S D A+LL+ A+ GVQ QTR Sbjct: 57 QTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 161 SQLGIRHFVVAVNKMDLLGFD-EKVFNDIR 189 ++GI + +NK+D G D V+ DI+ Sbjct: 117 RKMGIPT-IFFINKIDQNGIDLSTVYQDIK 145
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 45.3 bits (107), Expect = 8e-09 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Query: 40 ERLQNGDATVFISYSCENNPVGFVLNYHTFSSVSLGKIIILNDLFVTESHRKQGVANSLI 99 ++ F+ Y ENN +G + ++ +L + D+ V + +RK+GV +L+ Sbjct: 58 SYVEEEGKAAFLYYL-ENNCIGRIKIRSNWNGYAL-----IEDIAVAKDYRKKGVGTALL 111 Query: 100 DCAIDLAKRTGSVRVDLGTAKDNLKAQALYEKIGF 134 AI+ AK + L T N+ A Y K F Sbjct: 112 HKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.0 bits (83), Expect = 2e-04 Identities = 34/142 (23%), Positives = 51/142 (35%), Gaps = 12/142 (8%) Query: 245 VVNLMFAPAIGRFIGRIGERNALTIEYLGLIAVFVSYALVEHAEFAAALY---VIDHLLF 301 ++ AP +G R G R L + L V YA++ A F LY ++ + Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLV---SLAGAAVDYAIMATAPFLWVLYIGRIVAGITG 110 Query: 302 AMAIAVKTYFQKIADPKDIAAT---MSVSFTINHIAAVIIPALLGLLWLSSPEIVFYIGA 358 A Y I D + A MS F +A P L GL+ SP F+ A Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAG---PVLGGLMGGFSPHAPFFAAA 167 Query: 359 GFAACSLLLAINVPRHPQRGDE 380 + L + +G+ Sbjct: 168 ALNGLNFLTGCFLLPESHKGER 189
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 29.9 bits (67), Expect = 0.022 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%) Query: 47 ALKSQLQ---QLAQQQKQQQLQSQQKEAEQQQALQVASEAKSSA 87 A +Q+ + Q +QQQ Q Q QQQA A EA ++A Sbjct: 325 AFVNQIHLNFVMPPQAQQQQGQGQ-----QQQAQATAQEAVAAA 363
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 32.7 bits (74), Expect = 0.002 Identities = 14/43 (32%), Positives = 20/43 (46%) Query: 117 YALTMRVRNIYSSKDRLGKLDINYEDLADPKYKGKICTRSGKH 159 AL+ R +Y + LDI+YEDL K G +G+ Sbjct: 348 LALSDSARQLYQNAKYREALDIHYEDLIRRKTDGSSKFINGRE 390
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.012 Identities = 11/31 (35%), Positives = 14/31 (45%) Query: 34 LLGPSGCGKTTLLRAIAGLQAISHGSITIND 64 L G G GK+TL+ + GL S I Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDIGT 631
>AEROLYSIN#Aerolysin signature. Length = 493 Score = 30.4 bits (68), Expect = 0.009 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 17/66 (25%) Query: 30 ESVESDMRPCV--------------ANVAQYIFEL-ADQYSDSAFNGFVAIGANYWDTLY 74 S+ +RP V A+++ Y +E AD D +GF+ G N W T + Sbjct: 298 TSLSQSVRPTVPARSKIPVKIELYKADIS-YPYEFKADVSYDLTLSGFLRWGGNAWYT-H 355 Query: 75 PDARPS 80 PD RP+ Sbjct: 356 PDNRPN 361
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 148 bits (376), Expect = 6e-49 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 15 KSILKEERFGSQSEIVNALQAEGFSNINQSKVSRMLSKFGAVRTRNAKQEMVYCLPAELG 74 + I+ +Q E+V+ L+ +G+ N+ Q+ VSR + + V+ Y LPA+ Sbjct: 11 REIITANEIETQDELVDILKKDGY-NVTQATVSRDIKELHLVKVPTNNGSYKYSLPADQR 69 Query: 75 VPTAGSPLKNLV---LDVDHNQSMIVVRTSPGAAQLIARLLDSIGKPEGILGTIAGDDTI 131 ++L+ + +D +IV++T PG AQ I L+D++ E I+GTI GDDTI Sbjct: 70 FNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEE-IMGTICGDDTI 128 Query: 132 FICPSSIHSIEDTLETVKSLF 152 I + + + + L Sbjct: 129 LIICRTHDDTKVVQKKILELL 149
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 31.0 bits (70), Expect = 0.006 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%) Query: 17 GCGELGKEVAIELQRYGIEVIGVD--RY 42 G L K V LQ+ G V+G +Y Sbjct: 62 GWATLDKAVGGILQQQGWPVVGWSSLKY 89
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.3 bits (115), Expect = 3e-08 Identities = 36/230 (15%), Positives = 78/230 (33%), Gaps = 25/230 (10%) Query: 99 FQAIVKQKRAALVAAELEVPQLEAAWETARASVTRATADRDRTKSAFDRYEKGRKRGGVN 158 + + EL + + A T A + R KS D + + + Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAI- 249 Query: 159 SPFTELELDNKRQLYFAS-------------EAQLTAANAEELRVRLAYESNVDG----V 201 + L+ + + A E+++ +A E V +++ + Sbjct: 250 -AKHAV-LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQT 307 Query: 202 NTKVAGIQGELEKAQFELEQTVVKAPADGMVTQMALRPGIVAVPMPLRPLLSFIPDEERA 261 + + EL K + + +V++AP V Q+ + V L+ +P+++ Sbjct: 308 TDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVH-TEGGVVTTAETLMVIVPEDDTL 366 Query: 262 FVGAFWQNSLL-RLKEGDEAEVILDGAPGQ---VFKGRVAKVLPAMAEGE 307 V A QN + + G A + ++ P G+V + E + Sbjct: 367 EVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQ 416 Score = 46.0 bits (109), Expect = 2e-07 Identities = 26/174 (14%), Positives = 61/174 (35%), Gaps = 20/174 (11%) Query: 66 INPAVRGVVVSVEVEPNTPIKKGDVLFRIDPTPFQAIVKQKRAALVAAELEVPQLEAAWE 125 I P +V + V+ ++KGDVL ++ +A + +++L+ A LE Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQ-------- 150 Query: 126 TARASVTRATADRDRTKSAFDRYEKGRKRGGVNSPFTELELDNKRQLYFASEAQLTAANA 185 R + + + ++ E + +E E+ L + Q + Sbjct: 151 -TRYQILSRSIELNKLPELKLPDEPYFQN------VSEEEVLRLTSLI---KEQFSTWQN 200 Query: 186 EELRVRLAYESNVDGVNTKVAGIQGELEKAQFELEQTVVKAP--ADGMVTQMAL 237 ++ + L + T +A I ++ E + + + + A+ Sbjct: 201 QKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAV 254
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.003 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 29/122 (23%) Query: 305 EETIYLIAEPSLVERALQNLITNA------QRFSTDDIKVKISQDTDGIRLSVTDHGEGI 358 I + P ++ +Q L+ N Q I +K ++D + L V + G Sbjct: 247 NPAIMDVQVPPML---VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA 303 Query: 359 LEEDQSKIFEPFYRSSSSKNGNKGHGLGLAIIKRIMDRHH---AEVSLQSRPGFTQFTLF 415 L+ + + G GL ++ + + A++ L + G + Sbjct: 304 LKNTK-----------------ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVL 346 Query: 416 WP 417 P Sbjct: 347 IP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.1 bits (182), Expect = 2e-17 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 4/130 (3%) Query: 9 RVLLVEDDIRLANLIVDFLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68 +L+ +DD + ++ L G V + T+ + D+++ D+++P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 69 LCEKLPDYFAG-PILLMSALGSNEDQIKGLELGADDYVVKPVDP---ALLVARINNLLRR 124 L ++ P+L+MSA + IK E GA DY+ KP D ++ R +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 125 QAKPAQVESH 134 + + +S Sbjct: 125 RPSKLEDDSQ 134
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.4 bits (136), Expect = 8e-11 Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Query: 2 KILLIEDHLFQREAMQMQLELITSPKISLIRTAASGVEALQIMADFKPDILLCDLKMPEM 61 IL+ +D R + L +R ++ + +A D+++ D+ MP+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYD----VRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGITFLSHISEL-MFTGSIIITSASN 86 + L I + +++++ + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNT 86
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.7 bits (155), Expect = 3e-12 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 15/129 (11%) Query: 1067 ILVAEDHPINQDVIQMQLNKLGYFSDIFDDGQQALTAYKQNKYNLVLTDCHMPELDGYGL 1126 ILVA+D + V+ L++ GY I + +LV+TD MP+ + + L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 1127 VSAIREHEQQEKLTRLAVIALTA-----NAISSEKARCHQFGFDDYLIKPVTLEQLQRVL 1181 + I++ L V+ ++A AI + + G DYL KP L +L ++ Sbjct: 66 LPRIKKARP-----DLPVLVMSAQNTFMTAIKASEK-----GAYDYLPKPFDLTELIGII 115 Query: 1182 SEHLVMTQS 1190 L + Sbjct: 116 GRALAEPKR 124
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 25.0 bits (54), Expect = 0.039 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 8/43 (18%) Query: 7 YKFKNQAKEINFAYDKFHDMYEAVAAAEGIDLTQYLMMEQQVA 49 ++ N++ +I D A + A+G DL Q L+++ A Sbjct: 888 FELANRSNDI--------DTLYANSGAQGRDLLQTLLIDSHDA 922
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.7 bits (69), Expect = 0.001 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 81 DTLYLHDIALSSLSQGKGAGRQVLTALMNLALSKGYPSISLVAVQG----AHHYWAKQGF 136 + DIA++ + KG G +L + A + + L Q A H++AK F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLML-ETQDINISACHFYAKHHF 146 Query: 137 EIKKIDKDL 145 I +D L Sbjct: 147 IIGAVDTML 155
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 135 bits (341), Expect = 2e-37 Identities = 71/210 (33%), Positives = 97/210 (46%), Gaps = 24/210 (11%) Query: 124 AGMKVCVIDSGLDRSNQDFVWNNISG----DNDSGTGDWDQNGGPHGTHVAGTIGAADNN 179 G+KV V+D+G D + D I G D+D G + ++ HGTHVAGTI A +N Sbjct: 41 RGVKVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYNGHGTHVAGTIAATENE 100 Query: 180 VGVVGMAPGVDMHIIKVFNADGWGYSSDLAHAADLCSNAGANIISMSLGGGGSNSTESNA 239 GVVG+AP D+ IIKV N G G + +IISMSLGG A Sbjct: 101 NGVVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLGGPEDVPELHEA 160 Query: 240 FQSFSDAGGLVLAAAGNDGNSVRS-----YPAGYPSVMMIGANDATDAIADFSQFPSCTT 294 + + LV+ AAGN+G+ YP Y V+ +GA + ++FS + Sbjct: 161 VKKAVASQILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGAINFDRHASEFSNSNN--- 217 Query: 295 GRGKKQRTDLSICVEIAAGGVDTLSTYPAG 324 V++ A G D LST P G Sbjct: 218 ------------EVDLVAPGEDILSTVPGG 235 Score = 46.4 bits (110), Expect = 2e-07 Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 5/73 (6%) Query: 442 TSDYGFMSGTSMATPAVSGIAARVWSN-----HNQCTGEEIRAALNASARDSGASGHDVY 496 Y SGTSMATP V+G A + T E+ A L G S Sbjct: 234 GGKYATFSGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPKMEG 293 Query: 497 FGHGIVDAAAADA 509 G + A + Sbjct: 294 NGLLYLTAVEELS 306
>SECA#SecA protein signature. Length = 901 Score = 29.1 bits (65), Expect = 0.037 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 42/173 (24%) Query: 220 SQVVYPVEQRRKRELLSELIGK-KNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEK 278 +VY E + + ++ ++ + Q VLV T + + ++ + EL GI V++ Sbjct: 424 PDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN--- 480 Query: 279 AQGSRRRALREFKEGKM-RVLVATEVAARGLDIQ---------------GLEYVVNYDLP 322 A+ A + G V +AT +A RG DI E + Sbjct: 481 AKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 540 Query: 323 FLAED---------YV--------HRI-----GRTGRAGKSGVAISFVSREEE 353 + ++ RI GR+GR G +G + ++S E+ Sbjct: 541 WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 593
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.0 bits (83), Expect = 2e-04 Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 1/140 (0%) Query: 243 SLADTKWVIQSHIIAMYLPSLFSGALVARLGVSKMMLLGLLAYLVTIITAVIGRDLLNYW 302 A T WV + ++ + + G L +LG+ +++L G++ + +G + Sbjct: 47 PPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLL 106 Query: 303 -AALVLLGIGWNFLFVAGTALLPRCYAKTERYKVQSFNDTFIFGAQAMASLSAGWVIHLL 361 A + G G ++ R K R K + + + + G + H + Sbjct: 107 IMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI 166 Query: 362 GWNVLLLSCLPLIVAQVLLI 381 W+ LLL + I+ L+ Sbjct: 167 HWSYLLLIPMITIITVPFLM 186
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 141 bits (356), Expect = 7e-45 Identities = 70/132 (53%), Positives = 90/132 (68%), Gaps = 2/132 (1%) Query: 25 KAAKENIALGNAFLAENKLKDGVTTTASGLQYQVLEPGTGTVHPKASDTVTVHYHGTLID 84 K A+EN A G+AFL+ NK K G+ SGLQY++++ GTG P SDTVTV Y GTLID Sbjct: 99 KKAEENKAKGDAFLSANKSKPGIVVLPSGLQYKIIDAGTGA-KPGKSDTVTVEYTGTLID 157 Query: 85 GTVFDSSVERGEPIAFPLNRVIKGWTEGVQLMVVGEKARFFIPSELAYGNRS-AGKISGG 143 GTVFDS+ + G+P F +++VI GWTE +QLM G F+P++LAYG RS G I Sbjct: 158 GTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAGSTWEVFVPADLAYGPRSVGGPIGPN 217 Query: 144 STLIFDVELISI 155 TLIF + LIS+ Sbjct: 218 ETLIFKIHLISV 229
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 201 bits (513), Expect = 3e-64 Identities = 105/345 (30%), Positives = 158/345 (45%), Gaps = 36/345 (10%) Query: 24 SVYAAEADSSEPANEFAPYFYLGAKAGQMHYQNAC-ESWSVSCDGNYVGFGGFAGYQAWQ 82 +V A + A +Y GAK G Y + + + N +G G F GYQ Sbjct: 9 AVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNP 68 Query: 83 YLGFETAYLDLGEAVSGYSESAVNNTYVGSMKGWELSAVTRFGLSEDFELFAKAGSFYWD 142 Y+GFE Y LG Y S N Y +G +L+A + +++D +++ + G W Sbjct: 69 YVGFEMGYDWLGRM--PYKGSVENGAY--KAQGVQLTAKLGYPITDDLDIYTRLGGMVWR 124 Query: 143 GDNQG-PYSRNSDSGWAPMLGAGLAYQISPSWVARLEYQYIDKLGS--DLIGGSNGHLTT 199 D + Y +N D+G +P+ G+ Y I+P RLEYQ+ + +G + + + + Sbjct: 125 ADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLS 184 Query: 200 LGISYRFGQKKPASVSQVKEKPITLPEKVIPVTAKPVVFPALTVTS--LFDFDSSELTNS 257 LG+SYRFGQ + A P+ P P A V T+ S LF+F+ + L Sbjct: 185 LGVSYRFGQGEAA--------PVVAPA---PAPAPEVQTKHFTLKSDVLFNFNKATLKPE 233 Query: 258 -----DSLTAVIERLNQVPTAIANIKGYTDSTGAAAYNQALSERRAQAVADDLIAAGIKP 312 D L + + L+ + GYTD G+ AYNQ LSERRAQ+V D LI+ GI Sbjct: 234 GQAALDQLYSQLSNLD-PKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPA 292 Query: 313 EQIEVHGFGEQFPVMKNDTSEHRH---------ENRRVLIHIQST 348 ++I G GE PV N + +RRV I ++ Sbjct: 293 DKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGI 337
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 37.6 bits (87), Expect = 8e-06 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Query: 7 RISAFTLVELMVTLAVATILITVAAPSFNSFYENSRSDSAIRNIQQSLQLARSQAVSYGS 66 R FTL+E+M+ L + + + +F + ++S + + R + L+ + + + G Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLAR-FEAQLRFVQQRGLQTGQ 60 Query: 67 TVTVCPLRDGTCGTDWQ 83 V D WQ Sbjct: 61 FFGVSVHPDR-----WQ 72
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 36.0 bits (83), Expect = 2e-05 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 4 KTTGFTLIELMVTLVVATILIVIAVPSFTIFYAQARADSNIRKIQQSIQLARNHAVSYGS 63 K GFTL+E+MV +V+ +L + VP+ + + +AD I N Y Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVPN--LMGNKEKADKQKAVSD--IVALENALDMYKL 61 Query: 64 RVTVCPITAQGCSENW 79 P T QG Sbjct: 62 DNHHYPTTNQGLESLV 77
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 34.8 bits (80), Expect = 0.002 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 29/146 (19%) Query: 67 SVVDAVTAEDIGKFPDGDVGESLGRIPGVAVNRQFGQGQQVSIRGASSQLTRTLLNGHSV 126 S T +DI + +V ++L R+ GV + FG + I Sbjct: 144 SDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQYAMRI----------------- 186 Query: 127 ASTGWYDQQAIDRSFNYSLLPPEMVGAIEVYKSSQADIPEGGIGGT-VIVKTRKPLDLDA 185 W D + Y L P +++ + K I G +GGT + + + A Sbjct: 187 ----WLDADLL---NKYKLTPVDVINQL---KVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 186 NSVFISAKGDYGTISEEVDPELSGLY 211 + F + + ++G ++ V+ + S + Sbjct: 237 QTRFKNPE-EFGKVTLRVNSDGSVVR 261
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 30.4 bits (68), Expect = 0.028 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Query: 238 DTPNSPKLAENAILPTPTKVALKSDAKSVSLK-SGLKLTLNGVSPGAVDAALQR---LAQ 293 + P+ + A +K A K + L+ + + N VSPG+ + +Q + Sbjct: 145 NPAGVPRTSMAAY--ASSKAAAVMFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADE 202 Query: 294 LGVEQTDKG 302 G EQ KG Sbjct: 203 NGAEQVIKG 211
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.1 bits (73), Expect = 0.003 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 13/124 (10%) Query: 97 STYKAELAQHQAVLKQAVASRDVAVMNWERGRRLLPDGMISAQDMDELTSRKLTTA-AGV 155 EL +++ L+Q + A + +L+ Q KL + Sbjct: 262 VEAVNELRVYKSQLEQIESEILSA----KEEYQLV------TQLFKNEILDKLRQTTDNI 311 Query: 156 VQAEAAVDAAELQLSYTKVYAPISGRISHSKV-SIGDIITPQSEMANIV-QLQPMWVNFQ 213 + E + + + AP+S ++ KV + G ++T + IV + + V Sbjct: 312 GLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTAL 371 Query: 214 VAEK 217 V K Sbjct: 372 VQNK 375 Score = 29.0 bits (65), Expect = 0.034 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 12/89 (13%) Query: 81 EGDDIAAGDLLFEIDPSTYKAELAQHQAVLKQAVASRDVAVMNWERGRRLLPDGMISAQD 140 EG+ + GD+L ++ +A+ + Q+ L QA + R + L + + Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQ-------TRYQILS-----RSIE 161 Query: 141 MDELTSRKLTTAAGVVQAEAAVDAAELQL 169 +++L KL L Sbjct: 162 LNKLPELKLPDEPYFQNVSEEEVLRLTSL 190
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 994 bits (2572), Expect = 0.0 Identities = 439/1034 (42%), Positives = 643/1034 (62%), Gaps = 12/1034 (1%) Query: 2 ISEFFINRPKFAFVISTVLTLVGLISIPVLSVSEFPEIAPPQVSVSTSYSGASADIVKDT 61 ++ FFI RP FA+V++ +L + G ++I L V+++P IAPP VSVS +Y GA A V+DT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 62 IAQPLEAEVNGVEGMLYMESKSANDGSYSLNVTFEVGTDADMAQVKVQNRVQQAMPRLPE 121 + Q +E +NG++ ++YM S S + GS ++ +TF+ GTD D+AQV+VQN++Q A P LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 EVKRQGVKVEKQSPNMLMVVNLVSPNETFDSLFITNYAGLNVKDALARQYGVSKVQVIGA 181 EV++QG+ VEK S + LMV VS N I++Y NVKD L+R GV VQ+ GA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 182 LDYAMRIWLDPDQMASLGVTATDVIGALQEQNIQVAAGRIGAAPVDPEQQFQYTLQTKGR 241 YAMRIWLD D + +T DVI L+ QN Q+AAG++G P P QQ ++ + R Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 242 LKDPQEFYDVMIRANNDGSKVVVGDVARVELGSQTYDAQGKLNNKPSAIISIYQSPDANA 301 K+P+EF V +R N+DGS V + DVARVELG + Y+ ++N KP+A + I + ANA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 302 LEVGKAIKAEMEKLSERFPNDLEYEVLYDTTEFVETSIKEVVQTLFISIALVVFVVFIFL 361 L+ KAIKA++ +L FP ++ YDTT FV+ SI EVV+TLF +I LV V+++FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 362 QDVRSTLVPAIAIPVSLIGTFAFLLAFGMSINTVSLFALILAIGIVVDDAIVVVENVTRL 421 Q++R+TL+P IA+PV L+GTFA L AFG SINT+++F ++LAIG++VDDAIVVVENV R+ Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 422 MQDEGLSPKEATSKAMKEVTGPIIATTLVLLAVFAPTAVMPGITGQMYAQFSVTICISVL 481 M ++ L PKEAT K+M ++ G ++ +VL AVF P A G TG +Y QFS+TI ++ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 482 ISSINALTLSPALCASVLRAPKLHE----KGFHAAFNKHFERVTGKYMKLVSSLTRKLVL 537 +S + AL L+PALCA++L+ GF FN F+ Y V + Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 538 VGIVYGCLILLTGGIAKILPSGFVPMEDKKAFMVDIQLPDGASLNRTEDVMRDLVELTLA 597 ++Y ++ + LPS F+P ED+ F+ IQLP GA+ RT+ V+ + + L Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 598 --EPGVENVIHASGFSILTGSVSSNGGLMIVTLSTWDERESADMMESAIVAKLQAKYAAN 655 + VE+V +GFS + N G+ V+L W+ER + A++ + + + Sbjct: 600 NEKANVESVFTVNGFS--FSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKI 657 Query: 656 PAVKAMAFSLPPIPGVGSVGGFEFVLQDTQGRTPQELASVMRALIMKANEQP-EIAMAFS 714 + F++P I +G+ GF+F L D G L L+ A + P + Sbjct: 658 RDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 715 NFRADVPQMFVDVDRDKAKALGVSLNEIFATMQTMLGSMYVNDFNRFGKVFRVILQAETE 774 N D Q ++VD++KA+ALGVSL++I T+ T LG YVNDF G+V ++ +QA+ + Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 775 YRNSDKDISRFYVRSKTGEMVPLSTLVTVTPILGPDVMNNYNMFSSTTINGFPAAGFSSG 834 +R +D+ + YVRS GEMVP S T + G + YN S I G A G SSG Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSG 837 Query: 835 DAITAMERAANESLPSGYTYEWTGQTYQEIKAGNLAPLIFGLALVFTYLFLVAQYESWTI 894 DA+ ME A++ LP+G Y+WTG +YQE +GN AP + ++ V +L L A YESW+I Sbjct: 838 DAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSI 896 Query: 895 PFAVILAVPIAVLGAFLNILLVGSDLNLYAQIGLVLLIGLACKNAILIVEFAKQLRE-EG 953 P +V+L VP+ ++G L L ++Y +GL+ IGL+ KNAILIVEFAK L E EG Sbjct: 897 PVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEG 956 Query: 954 KSILEAGETAARLRFRAVLMTAFSFLLGVLPLVIATGAGAGSRRALGYSVFGGMLAATVV 1013 K ++EA A R+R R +LMT+ +F+LGVLPL I+ GAG+G++ A+G V GGM++AT++ Sbjct: 957 KGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLL 1016 Query: 1014 GTLLVPVFYVIMQK 1027 VPVF+V++++ Sbjct: 1017 AIFFVPVFFVVIRR 1030 Score = 86.0 bits (213), Expect = 5e-19 Identities = 103/516 (19%), Positives = 190/516 (36%), Gaps = 60/516 (11%) Query: 545 LILLTGGIA-KILPSGFVPMEDKKAFMVDIQLPDGASLNRTEDVMRDLVELTLAEPGVEN 603 ++++ G +A LP P A V P GA +D + ++E + G++N Sbjct: 18 ILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQTVQDTVTQVIEQNMN--GIDN 74 Query: 604 VIHASGFSILTGSVSSNGGLMIVTLSTWDERESADMMESAIVAKLQAKYAANPAVKAMAF 663 +++ S S S + G + +TL T+ D+ + + KLQ P Sbjct: 75 LMYMS-------STSDSAGSVTITL-TFQSGTDPDIAQVQVQNKLQLATPLLPQ----EV 122 Query: 664 SLPPIPGVGSVGGFEFVL---QDTQGRTPQEL----ASVMRALIMKANEQPEIAMAFSNF 716 I S + V D G T ++ AS ++ + + N ++ + + + Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182 Query: 717 RADVPQMFVDVDRDKAKALGVSLNEIF-----ATMQTMLGSMYVNDFNRFGKVFRVILQA 771 M + +D D ++ ++ Q G G+ + A Sbjct: 183 -----AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQ-LGGTPALPGQQLNASIIA 236 Query: 772 ETEYRNSDKDISRFYVR-SKTGEMVPLSTLVTVTPILGPDVMNNYNMFSSTTINGFPAAG 830 +T ++ + ++ + +R + G +V L + V LG + NYN ING PAAG Sbjct: 237 QTRFK-NPEEFGKVTLRVNSDGSVVRLKDVARVE--LGGE---NYN--VIARINGKPAAG 288 Query: 831 FS-----------SGDAITAMERAANESLPSGYTYEWTGQTYQEIKAGNLA---PLIFGL 876 + AI A P G + T ++ L + Sbjct: 289 LGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAI 348 Query: 877 ALVFTYLFLVAQYESWTIPFAVILAVPIAVLGAFLNILLVGSDLNLYAQIGLVLLIGLAC 936 LVF ++L ++ +AVP+ +LG F + G +N G+VL IGL Sbjct: 349 MLVFLVMYLF--LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLV 406 Query: 937 KNAILIVE-FAKQLREEGKSILEAGETAARLRFRAVLMTAFSFLLGVLPLVIATGAGAGS 995 +AI++VE + + E+ EA E + A++ A +P+ G+ Sbjct: 407 DDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAI 466 Query: 996 RRALGYSVFGGMLAATVVGTLLVPVFYVIMQKMREK 1031 R ++ M + +V +L P + K Sbjct: 467 YRQFSITIVSAMALSVLVALILTPALCATLLKPVSA 502
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 774 bits (1999), Expect = 0.0 Identities = 305/1032 (29%), Positives = 516/1032 (50%), Gaps = 28/1032 (2%) Query: 3 LSDVSVKRPVVAIVLSLLLCVFGAVSFTKLAVREMPDVESPVVTVMTTYEGASATIMESQ 62 +++ ++RP+ A VL+++L + GA++ +L V + P + P V+V Y GA A ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 ITTALESELTGISGVDQIESVT-RNGMSRITVTFLLGWDLTEGVSDVRDAVARAQRRLPD 121 +T +E + GI + + S + G IT+TF G D V++ + A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 EAKDPIVSKDNGSGEPAVYVNLSSSVMDRTQ--LTDYAQRVLEDRFSLISGVSSVDISGG 179 E + +S + S + S TQ ++DY ++D S ++GV V + G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 LYKVMYVQLNPELMAGRNITASDIVSVLNRENVETPGGEVRNDTTV------MAVRTARL 233 Y + + L+ +L+ +T D+++ L +N + G++ + ++ Sbjct: 181 QYAMR-IWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 YQTPDDFNYLVLRTAADGSQVYLKDVANVFIGAENENSTFKSDGVVNISLGIVPQSDANP 293 ++ P++F + LR +DGS V LKDVA V +G EN N + +G LGI + AN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 LEVAQDVHKEVDQIQKFLPEGTKLIVDYDSTVFIDRSIDEVFSTLAVTALLVILVLYIFI 353 L+ A+ + ++ ++Q F P+G K++ YD+T F+ SI EV TL +LV LV+Y+F+ Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 GQARATLIPAVTVPVSLISAFIAANVFGYSINLLTLMALILSIGLVVDDAIVVVENIFHH 413 RATLIP + VPV L+ F FGYSIN LT+ ++L+IGL+VDDAIVVVEN+ Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 I-EKGEPPILAAYNGTREVGFAVMATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVL 472 + E PP A ++ A++ VL VF+P++F G G ++ +FS+ + ++ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 FSSLIALTLTPVLGSKILKANVK-----PNRFNVWVESIFTRLENFYRKMVTKAVTLRLA 527 S L+AL LTP L + +LK F W + F N Y V K + Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 528 APLVIIACILGSGWLMQQVPAQLAPQEDRGVIFAFIKGAEGTSYNRMAANMEIVEDKLMP 587 L+ + G L ++P+ P+ED+GV I+ G + R ++ V D + Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 588 LLGQGVVKSFSIQAPAFGGRAGDQTGFVIIQLEDWNERTVNAQQALGIVAKA---LKGIP 644 V F++ +F G+ G + L+ W ER + A ++ +A L I Sbjct: 600 NEKANVESVFTVNGFSFSGQ-AQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 645 DVMVRP--LLPGFRGGSSEPVQFVL---GGSDYQELFKWAQMLEEEALYSPI-LDSPEID 698 D V P + G++ F L G + L + L A P L S + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 699 YKETSPELVVTVDKERAAQLGISVAEVSETLEIMLGGRSETTFVERGEEYDVYLRGDENS 758 E + + + VD+E+A LG+S++++++T+ LGG F++RG +Y++ D Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 759 FNNVADLSQIYMRSAKGELITLDTITHIEEVASALKLSHNNKQKSITLKANLAEGYTLGE 818 D+ ++Y+RSA GE++ T V + +L N S+ ++ A G + G+ Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 819 ALDFLDQKAIEMLPSDISVAYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINP 878 A+ + + LP+ I +TG S + + + + ++ +V +L LAA +ES+ P Sbjct: 839 AMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIP 897 Query: 879 LVVMFTVPMGVFGGFLGLYLTGQGLNIYSQIGMIMLIGMVTKNGILIVEFANQLRDR-GL 937 + VM VP+G+ G L L Q ++Y +G++ IG+ KN ILIVEFA L ++ G Sbjct: 898 VSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 938 EIEQAIIDASVRRLRPILMTAFTTLIGAIPLILSTGAGAESRISVGTVVFFGMAFATFVT 997 + +A + A RLRPILMT+ ++G +PL +S GAG+ ++ +VG V GM AT + Sbjct: 958 GVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLA 1017 Query: 998 LLVIPAMYRLIS 1009 + +P + +I Sbjct: 1018 IFFVPVFFVVIR 1029
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.3 bits (89), Expect = 4e-05 Identities = 35/189 (18%), Positives = 74/189 (39%), Gaps = 20/189 (10%) Query: 100 AKAQAALAESAAYLAD---EKRKLKEFLKLIDQNAITKTEIDAQKASVDMA--TARLAAA 154 +A L + L E KE +L+ Q + ++ + ++ T LA Sbjct: 262 VEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKN 321 Query: 155 QADLDYHYLSAPFSGT-AGLIDFSQGKMVSAGTELLTL-DDLSSMRLDLQIPENYLSQLS 212 + + AP S L ++G +V+ L+ + + ++ + + + ++ Sbjct: 322 EERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFIN 381 Query: 213 VGMSVTASSRAWPQKQF---IGKV--IAIDSRVNQDT-LNLRVRVQFD-------NPSHR 259 VG + A+P ++ +GKV I +D+ +Q L V + + N + Sbjct: 382 VGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIP 441 Query: 260 LKPGMMMSA 268 L GM ++A Sbjct: 442 LSSGMAVTA 450 Score = 36.7 bits (85), Expect = 1e-04 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 13/183 (7%) Query: 69 ISPQIAGKIKSIQVSTEQEIAQGQILIQLDDAKAQAALAESAAYLADEKRKLKEFLKLID 128 I P +K I V + + +G +L++L A+A ++ + L +L++ I Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA--RLEQTRYQIL 156 Query: 129 QNAITKTEIDAQKASVDMATARLAAAQADLDYHYLSAPFSGTAGLIDFSQGKMVSAGTEL 188 +I ++ K + ++ + + FS + + E Sbjct: 157 SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAER 216 Query: 189 LTLDDLSSMRLDLQIPENYLSQLSVGMSVTASSRAWPQKQFIGK--VIAIDSRVNQDTLN 246 LT+ L Y + V S + KQ I K V+ +++ + Sbjct: 217 LTV---------LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNE 267 Query: 247 LRV 249 LRV Sbjct: 268 LRV 270
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.010 Identities = 20/185 (10%), Positives = 55/185 (29%), Gaps = 5/185 (2%) Query: 473 LQSLSNQLTDSHNSVEIVNKESQAISKITEVINSIAEQTNLLALNAAIEAARAGEQGRGF 532 LQ+ Q S I + + E + +L L + I+ + Q + Sbjct: 144 LQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQ-- 201 Query: 533 AVVADEVRTLAQRTQTSIAEISQTITQLQSQVKFTTEQMNQSNELGDVSAAQGNEAIAQL 592 + + + + I + ++ + +++ + L A + + Q Sbjct: 202 ---KYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQE 258 Query: 593 LEINTSIAELAATSTSIASATEQQSAVAEEITRNLHQITELARDGEQRAGESVDSAESLA 652 + ++ EL + + + + EE D ++ +++ Sbjct: 259 NKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLEL 318 Query: 653 TIANE 657 E Sbjct: 319 AKNEE 323
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 375 bits (965), Expect = e-115 Identities = 202/1045 (19%), Positives = 432/1045 (41%), Gaps = 67/1045 (6%) Query: 10 RLISLVIALLIV-AGFGAISSLPRMEDPEITNRFASVITHYPGASAERVEALVTEVLESE 68 + + V+A++++ AG AI LP + P I SV +YPGA A+ V+ VT+V+E Sbjct: 9 PIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQN 68 Query: 69 LRRLEELKLVQSTS-RPGISVIQLELKDDVIETAPVWSR--ARDLIADAKGLLPQSAQNT 125 + ++ L + STS G I L + T P ++ ++ + A LLPQ Q Sbjct: 69 MNGIDNLMYMSSTSDSAGSVTITLTFQSG---TDPDIAQVQVQNKLQLATPLLPQEVQQQ 125 Query: 126 TLDDQLGYANTAILGVVWRGSGVVRTDMLNRYAKE-LQSRLRLLSGTDFVNLYGQPAEEI 184 + + ++ ++ + D ++ Y ++ L L+G V L+G + Sbjct: 126 GISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ-YAM 184 Query: 185 LVQLDGNKVNQLQLSAKTIAQILQNADAKVSAGEINN------QQFRALVEVSGELDSLA 238 + LD + +N+ +L+ + L+ + +++AG++ QQ A + + Sbjct: 185 RIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPE 244 Query: 239 RISQVPLKVTASGQIIRLADIATISRQPKEPANSIALIDQEQGVMVAARMLSNTRVDLWL 298 +V L+V + G ++RL D+A + E N IA I+ + + ++ + Sbjct: 245 EFGKVTLRVNSDGSVVRLKDVARV-ELGGENYNVIARINGKPAAGLGIKLATGANALDTA 303 Query: 299 EKVRTAVEELQTSIPANIEIQWLFDQEGYTTERLSDLVGSLLLG-FLIILAVLMLTLGLR 357 + ++ + ELQ P +++ + +D + + ++V +L L+ L + + +R Sbjct: 304 KAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMR 363 Query: 358 NALIVALSLPLTALFTLACMKYIGLPIHQMSVTGLVVALGIMVDNAIVIVDAISQRRQK- 416 LI +++P+ L T A + G I+ +++ G+V+A+G++VD+AIV+V+ + + + Sbjct: 364 ATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMED 423 Query: 417 GTDRLTAVKETLQHLWLPLAGSTITTMLAFAPIVLMPGAAGEFVGGIAISVMFALLGSFI 476 A ++++ + L G + F P+ G+ G +I+++ A+ S + Sbjct: 424 KLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVL 483 Query: 477 ISHTIIAGLAGRFGVDGKSQHWYQHGINLPWLSDAFRQTLTLA-------LARPLLAAIV 529 ++ + L ++H G W + F ++ L ++ Sbjct: 484 VALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLI 543 Query: 530 IGVLPVMGFIAAGKMTEQFFPPSDRDMFQIEVYLAPHASIANTREQVSQIDADL--RATA 587 ++ + ++ F P D+ +F + L A+ T++ + Q+ A Sbjct: 544 YALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKA 603 Query: 588 GITRIDWVVGGNAPSFYYNLLQRQQGASHYAQAMVKVSDFD-------TANKLIPQLQKT 640 + + V G + A + A V + ++ +A +I + + Sbjct: 604 NVESVFTVNGFSFSG----------QAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKME 653 Query: 641 LD-----IRYPQAQIIVRKLEQGPPFNAPVEVRIFGPNLDQLKLLGEQVRKLLSET-ADV 694 L P + +L F+ + + G D L Q+ + ++ A + Sbjct: 654 LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQ-AGLGHDALTQARNQLLGMAAQHPASL 712 Query: 695 IHTRATLSAGAPKVWLQIDEDASLMSGLSLTDIAKQVEMATTGINGGSILEQTESLPVRV 754 + R + L++D++ + G+SL+DI + + A G +++ + V Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYV 772 Query: 755 RLNDSTREEQTKLAEITLVSSQGKGIPLSAISSSEIEVSRGAIPRRDGQRVNTIEAYITS 814 + + R + ++ + S+ G+ +P SA ++S + R +G I Sbjct: 773 QADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPS----MEIQG 828 Query: 815 GVLPQTVVDSVSAKLSDIA--LPSGYRLELGGESAKRNEAVGNLMSNLVLVVTLLLATVV 872 P T A + ++A LP+G + G S + + + + + ++ + Sbjct: 829 EAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 873 LSFNSFRLTAIILFSAMQSAGLGLLAVYSFGYPFGFTVIIGLLGLMGLAINAAIVILAEL 932 + S+ + ++ LLA F ++GLL +GL+ AI+I+ Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 933 EEVPKARAGDKQTIVDLVTSCG----RHIGSTTITTIGGFLPLII---AGGGFWPPFAIA 985 ++ + + +V+ R I T++ I G LPL I AG G I Sbjct: 949 KD---LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIG 1005 Query: 986 IAGGTLLTTLLSLIWVPTMYHLLMR 1010 + GG + TLL++ +VP + ++ R Sbjct: 1006 VMGGMVSATLLAIFFVPVFFVVIRR 1030
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.7 bits (90), Expect = 3e-05 Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 21/121 (17%) Query: 76 GKIKALGVDSGDKVKQGQLLAKLDTRLLMAEKNELTASLAQNKADL-------------- 121 +K + V G+ V++G +L KL A+ + +SL Q + + Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 122 -----DLAKATLDRSLGLQKQGYVS--EQQLDELKGQLSSLQAAKTRLNASLLANQLKIE 174 + + S ++Q + Q + + A L +I Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 175 K 175 + Sbjct: 225 R 225
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 75.8 bits (186), Expect = 3e-19 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 5/138 (3%) Query: 9 RSEQKRGQILQAAKELFCEHGFPNTSMDEVAKLAGVSKQTVYSHFGCKDDLFVA--SIES 66 +++ R IL A LF + G +TS+ E+AK AGV++ +Y HF K DLF + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 67 KCLVHGVNQEVFADPKAPEQSLMLFAKHFGEVITSPEAVTVFKACVSQADTHP---EISE 123 + + P P L H E + E + + + + Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 124 LFYSAGPQHILGLLRDYL 141 + L Sbjct: 128 QAQRNLCLESYDRIEQTL 145
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 2e-14 Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 12/128 (9%) Query: 180 HIMVIDDSSVARKQIIRALTSLDLQIDTAKDGKEALEKLRAIAVGCEDVSTEIPLIISDI 239 I+V DD + R + +AL+ + + + A +++D+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDL---------VVTDV 55 Query: 240 EMPEMDGYTLTAEIRDDPKLKNIKVVLHTSLSGVFNQAMVQKVGANDFIAK-FNPDELAA 298 MP+ + + L I+ ++ V++ ++ + + GA D++ K F+ EL Sbjct: 56 VMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG 113 Query: 299 AVNKHLSL 306 + + L+ Sbjct: 114 IIGRALAE 121
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 33.8 bits (77), Expect = 2e-04 Identities = 11/38 (28%), Positives = 18/38 (47%) Query: 99 NVNVMEEMANMISASRSYQMNVQVTEAAKSMLQQTLRI 136 VN+ EE N+ + Y N QV + A ++ + I Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 26.5 bits (58), Expect = 0.047 Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 8 NVAGSGMSAQSVRLNTTASNIANAD 32 N A SG++A LNT ++NI++ + Sbjct: 5 NNAMSGLNAAQAALNTASNNISSYN 29
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.5 bits (97), Expect = 5e-06 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 7/94 (7%) Query: 2 SFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVAT 61 N A+SG+++AQ LNT +NNI++ N G+ A S++ A VG GV Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQA-NSTLGAGG--WVGNGVYV 59 Query: 62 SQVAQQFHQGSMQFTNNSLDMAINGGGFFVTSSE 95 S V +++ F N L A E Sbjct: 60 SGVQREYD----AFITNQLRAAQTQSSGLTARYE 89 Score = 38.0 bits (88), Expect = 6e-05 Identities = 12/49 (24%), Positives = 24/49 (48%) Query: 405 SIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTVLQIR 453 + + S V+L E +L Q+ + AN++ L+ N + ++ IR Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.8 bits (64), Expect = 0.020 Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 4 LLYVAMSGAKQNMNSLAVSANNLANANTDGFKSS 37 L+ AMSG +L ++NN+++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQ 36
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 46.5 bits (110), Expect = 6e-08 Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 4/119 (3%) Query: 145 EDATSITVSAEGEVSVKTPGNAENQVVGQLAISDFINPSGLDPMGQNLYMETG---ASGT 201 D I +++E + N + + Q + +L + G A+ Sbjct: 427 TDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLK 486 Query: 202 PIQGTASLDGMGAIRQGALETSNVNVTEELVNLIESQRIYEMNSKVISAVDQMLSYVNQ 260 T + + S VN+ EE NL Q+ Y N++V+ + + + Sbjct: 487 TSSATQGNV-VTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 35.3 bits (81), Expect = 2e-04 Identities = 8/36 (22%), Positives = 21/36 (58%) Query: 5 LWISKTGLDAQQTDISVISNNVANASTVGFKKSRAV 40 + + +GL+A Q ++ SNN+++ + G+ + + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI 39
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 142 bits (359), Expect = 2e-44 Identities = 72/219 (32%), Positives = 108/219 (49%), Gaps = 15/219 (6%) Query: 1 MLMAAISGCNSTNGKPIADDPYYAPVYPEAPPTKIAATGSMYQDSQ-----ASSLYSDIK 55 +L+ +++GC P+ A P P A GS++Q +Q L+ D + Sbjct: 14 LLVLSLTGCAWIPSTPLVQGATSAQPVPGPTP---VANGSIFQSAQPINYGYQPLFEDRR 70 Query: 56 ALKVGDIITVLLMEQTQAKKSANNEISK----GTDLSLDPIYAGGGNVTIGGNPIDLRYK 111 +GD +T++L E A KS++ S+ P Y G G D+ Sbjct: 71 PRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLF---GNARADVEAS 127 Query: 112 DSMNTKRESDADQSNSLSGSISANVMQVLNNGNLVIRGEKWISINNGDEFVRITGIVRAQ 171 + A+ SN+ SG+++ V QVL NGNL + GEK I+IN G EF+R +G+V + Sbjct: 128 GGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPR 187 Query: 172 DIRPDNTIDSQRVANARIQYSGTGTFAEVQKVGWLASFF 210 I NT+ S +VA+ARI+Y G G E Q +GWL FF Sbjct: 188 TISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFF 226
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 383 bits (984), Expect = e-134 Identities = 164/367 (44%), Positives = 223/367 (60%), Gaps = 14/367 (3%) Query: 6 LVLLCAILALSAPVHAQ--RIKDIANVQGVRSNQLIGYGLVVGLPGTGEKTR---YTEQT 60 LV + P A RIKDIA++Q R NQLIGYGLVVGL GTG+ R +TEQ+ Sbjct: 11 LVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQS 70 Query: 61 FKTMLKNFGINLPDNFRPKIKNIAVVAVSAEMPPFIKPGQTLDVTVSSLGEAKSLRGGML 120 + ML+N GI + KNIA V V+A +PPF PG +DVTVSSLG+A SLRGG L Sbjct: 71 MRAMLQNLGITTQGG-QSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNL 129 Query: 121 LQTFLKGVDGNVYAIAQGSMVVSGFSAEGMDGSKVVQNTPTVGRIPNGAIIERTVATPFS 180 + T L G DG +YA+AQG+++V+GFSA+G D + + Q T R+PNGAIIER + + F Sbjct: 130 IMTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFK 188 Query: 181 TGDHLTFNLRRADFSTAKRLADSINDL----LGPGMARPLDAASVQVSAPRDVSQRVSFL 236 +L LR DFSTA R+AD +N G +A P D+ + V PR V+ + Sbjct: 189 DSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VADLTRLM 247 Query: 237 ATLENIEVEPAAESAKVIVNSRTGTIVVGQNVKLLPAAVTHGGLTVTIAEATQVSQPNAF 296 A +EN+ VE AKV++N RTGTIV+G +V++ AV++G LTV + E+ QV QP F Sbjct: 248 AEIENLTVETDTP-AKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPF 306 Query: 297 GNGQTVVTTDSTIDVAEEDSRMFMFNPGTTLDELVRAVNLVGAAPSDVLAILEALKMAGA 356 GQT V + I +E S++ + G L LV +N +G ++AIL+ +K AGA Sbjct: 307 SRGQTAVQPQTDIMAMQEGSKVAIVE-GPDLRTLVAGLNSIGLKADGIIAILQGIKSAGA 365 Query: 357 LHGELII 363 L EL++ Sbjct: 366 LQAELVL 372
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 199 bits (506), Expect = 2e-63 Identities = 105/344 (30%), Positives = 173/344 (50%), Gaps = 58/344 (16%) Query: 7 ASQFLDLGGLDSLRSRAQKDETSALKEVAQQFEGIFVQMLMKSMRDANAVFESDSPMNSQ 66 AS D L+ L+++A +D + ++ VA+Q EG+FVQM++KSMRDA D +S+ Sbjct: 9 ASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALP---KDGLFSSE 65 Query: 67 YTKFYEQMHDQQMSLNLSGEGMLGLADLMVQQLDPANSPMTPASVLRGDINGGSKAAALT 126 +T+ Y M+DQQ++ ++ LGLA++MV+Q+ P Sbjct: 66 HTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQ----------------------- 102 Query: 127 MDRPDMLQMPSSRIASPDTITDHVPKNQNSFASNSQASAPQAITSSVQSQTLDSVLSGKI 186 P ++P + + + QA++ VQ Sbjct: 103 ---------PLPEESTPAAPMKFPLETVVRYQN-------QALSQLVQ------------ 134 Query: 187 LPSAAVNADKSQANFTSQDEFVARLYPHAQKAAQTLGTTPEVLIAQSALETGWGQKMVKG 246 + N D S S+ F+A+L AQ A+Q G +++AQ+ALE+GWGQ+ ++ Sbjct: 135 -KAVPRNYDDS-LPGDSKA-FLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRR 191 Query: 247 HQGQQSNNLFNIKADNRWQGEKASVSTLEYEQGIAVKQQANFRVYEDIGQSFNDFVSFVS 306 G+ S NLF +KA W+G ++T EYE G A K +A FRVY ++ +D+V ++ Sbjct: 192 ENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLT 251 Query: 307 NGERYQDAMKQAANPQAFIRSLQEAGYATDPKYADKVIQVMKTI 350 RY A+ AA+ + ++LQ+AGYATDP YA K+ +++ + Sbjct: 252 RNPRYA-AVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQM 294
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 217 bits (553), Expect = 6e-65 Identities = 117/454 (25%), Positives = 197/454 (43%), Gaps = 19/454 (4%) Query: 4 DLMNIARTGVLASQSQLAITSNNIANANTAGYNRQVVSQSALDSQRMGNDFYGAGTYVSD 63 L+N A +G+ A+Q+ L SNNI++ N AGY RQ + +S + G G YVS Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61 Query: 64 VKRVYNDYATRELRIGSTAVSETQTTFGKMSELDQLFSQIGKGVPEGLNNFFASMNALSD 123 V+R Y+ + T +LR T S + +MS++D + S + + +FF S+ L Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLVS 121 Query: 124 IPGDLGMRGSMLTSANQLADSINQMQGHLDSQMTQTNDQIAAVTTRINEISKELGNINRE 183 D R +++ + L + +L Q Q N I A +IN +K++ ++N + Sbjct: 122 NAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLNDQ 181 Query: 184 LMKSQGEDM-----QLLDKQDALILELSEYASVNVVPLDSGAKSVMLGGSMMLVSGEVSM 238 + + G LLD++D L+ EL++ V V D G ++ + LV G + Sbjct: 182 ISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTAR 241 Query: 239 QMGTVQGDPYPNELQITAQSG--NKSMIVDATKLGGQLGALVNYRDETLTPSQMEFGQYA 296 Q+ V P+ + G I + G LG ++ +R + L ++ GQ A Sbjct: 242 QLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQLA 301 Query: 297 LGVADAFNQAQAQGFDLNGQVGANIFTDINDPSMQIGRVGALSSNTGTANLSVNIDDVGS 356 L A+AFN GFD NG G + F + V + N G + + D + Sbjct: 302 LAFAEAFNTQHKAGFDANGDAGEDFFA------IGKPAVLQNTKNKGDVAIGATVTDASA 355 Query: 357 LTGSSYELKF--TAPSTYELKDAASGNITPLTLNGTKLEGADGFSIDIDAGALASGDTFE 414 + + Y++ F L + +TP +G + G A D+F Sbjct: 356 VLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFT----GTPAVNDSFT 411 Query: 415 IRPTSGAAASISVEMTDGKGIAAAGTKITADAAN 448 ++P S A ++ V +TD IA A + D+ N Sbjct: 412 LKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDN 445 Score = 93.1 bits (231), Expect = 5e-22 Identities = 40/104 (38%), Positives = 58/104 (55%) Query: 534 AEGDNTNMVNMAKLNEAKLMNGGKTTLNDVYENTKFDVGSKTKAAEVAMGSADAIYTQAY 593 + DN N + L GG + ND Y + D+G+KT + + + + TQ Sbjct: 441 GDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLS 500 Query: 594 TRVQSVSGVNLDEEAANLMRFQQSYQASARIMTTANEIFNTLFS 637 + QS+SGVNLDEE NL RFQQ Y A+A+++ TAN IF+ L + Sbjct: 501 NQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLAGELLIN#Flagellin signature. Length = 507 Score = 61.2 bits (148), Expect = 3e-12 Identities = 49/307 (15%), Positives = 104/307 (33%), Gaps = 3/307 (0%) Query: 1 MRISTAQMFHQTSSNVLKGQSATSQILEQLASGKKVNTAGDDPIAAAGIDNLNQQSALTN 60 I+T + T +N+ K QS+ S +E+L+SG ++N+A DD A + Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 QFLKNIDYASNRLAVSESKIGSAETLIQSMHEGMLRSVNGTLNDADRQAIADEMRSSLEE 120 Q +N + + +E + +Q + E +++ NGT +D+D ++I DE++ LEE Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 LMSIANSKDESGNSLFAGFATDTTPFAFDNSGNVVYSGDSGVRDSIVASGITVGSNIA-- 178 + ++N +G + + ++ + S+ G V Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEAT 181 Query: 179 -GDSIFMNAANAIGDYSVNYSASQTGSFTVESAKVTDASLPVVGDYTFDFVDNGAGGLDL 237 GD D + + + V + + D Sbjct: 182 VGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDA 241 Query: 238 NVTDSSGGVDTIPNFDPSQPVTVDGIELQFKGTPVAGDTFSMSPETQSNIFDTLNSAISL 297 + T + + ++ D ++ + + N +S Sbjct: 242 ENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVST 301 Query: 298 LEDGAKL 304 +G K+ Sbjct: 302 TINGEKV 308
>FLAGELLIN#Flagellin signature. Length = 507 Score = 145 bits (368), Expect = 3e-41 Identities = 107/326 (32%), Positives = 156/326 (47%), Gaps = 2/326 (0%) Query: 2 AISVNTNVTSMRAQNNLNSANSSTQTSMERLSSGLRINSAKDDAAGLQISNRMTSQINGI 61 A +NTN S+ QNNLN + SS +++ERLSSGLRINSAKDDAAG I+NR TS I G+ Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GVAMRNANDGISIAQTAEGAMQESTNILQRMRDLSLQSANGSNSADDRAAMQKEMTSLQA 121 A RNANDGISIAQT EGA+ E N LQR+R+LS+Q+ NG+NS D ++Q E+ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELTRISDTTSFGGQKLLNGDYGTQNFQVGANANETISLTLSDISADQLGSSGQSVDGALT 181 E+ R+S+ T F G K+L+ D QVGAN ETI++ L I LG G +V+G Sbjct: 121 EIDRVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 AAEITATVAGGTGSGEISFSYTPLDGSAETLTADLTGVTDADGMAAAINTALAGASISTG 241 A + +G +++ + + + T A + + A ++T Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 242 VIASSDGTDVTFGGIGNNGDVLTLTRKIDDGTTTAPATAFALGGDDSQVISVDDIDLTTE 301 ++ D+ G T G + + D + Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID-TKTGNDGNGK 298 Query: 302 AGAQSAISTIDAAIIQIDSQRADLGA 327 + + I + A++ A Sbjct: 299 VSTTINGEKVTLTVADITAGAANVDA 324 Score = 89.7 bits (222), Expect = 1e-21 Identities = 59/278 (21%), Positives = 96/278 (34%), Gaps = 8/278 (2%) Query: 124 TRISDTTSFGGQKLLNGDYGTQNFQVGANANETISLTLSDISADQLGSSGQSVDGALTAA 183 ++ N I + G + T Sbjct: 229 VNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 184 EITATVAGGTGSGEISFSYTPLDGSAETLTADLTGVTDADGMAAAINTALAGASISTGVI 243 T G S I+ L + T A + + G Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 244 ASSDGTDVTFGGIGNNGDVLTLTRKIDDGTTTAPATAFALGGDD--------SQVISVDD 295 + +T + T A L G +++ Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 296 IDLTTEAGAQSAISTIDAAIIQIDSQRADLGAVQNRMSFTINNLSNIQSNVTDARSRIQD 355 + + +++ID+A+ ++D+ R+ LGA+QNR I NL N +N+ ARSRI+D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 356 VDFAKETAELTKQQILSQTSSAMLAQANQLPQTALSLL 393 D+A E + ++K QIL Q +++LAQANQ+PQ LSLL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>FLAGELLIN#Flagellin signature. Length = 507 Score = 146 bits (370), Expect = 2e-41 Identities = 107/326 (32%), Positives = 159/326 (48%), Gaps = 2/326 (0%) Query: 2 AISVNTNVTSMRAQGNLNSANSSVQTSMERLSSGLRINSAKDDAAGLQISNRMTSQINGI 61 A +NTN S+ Q NLN + SS+ +++ERLSSGLRINSAKDDAAG I+NR TS I G+ Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GVAMRNANDGISIAQTAEGAMQESTNILQRMRDLSLQSANGSNSADDRAAMQKEITSLNA 121 A RNANDGISIAQT EGA+ E N LQR+R+LS+Q+ NG+NS D ++Q EI Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELTRISDTTSFGGQKLLDGNYGTQNFQVGANANETISLTLSDISADQLGSSGQSVDGALT 181 E+ R+S+ T F G K+L + QVGAN ETI++ L I LG G +V+G Sbjct: 121 EIDRVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 AAEITATVAGGTGSGEISFSYTPLDGSAETLTADLTGVTDADGMAAAINTALAGASISTG 241 A + +G +++ + + + T A + + A ++T Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 242 VVASSDGTDVTFGGIGNNGDVLTLTRKIDDGTTTAPATAFALGGDDSQVNSVNDIDLTTE 301 ++ D+ G T F G +++ D + Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDT-FDYKGVTFTIDTKTGNDGNGK 298 Query: 302 AGSQSAISTIDAAISQIDSQRADLGA 327 + + ++ I + A++ A Sbjct: 299 VSTTINGEKVTLTVADITAGAANVDA 324 Score = 89.7 bits (222), Expect = 1e-21 Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 5/218 (2%) Query: 181 TAAEITATVAGGTGSGEISFSYTPLDGSAETLTADLTGVTDADGMAAA-----INTALAG 235 T T + T D +A D + + + + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 236 ASISTGVVASSDGTDVTFGGIGNNGDVLTLTRKIDDGTTTAPATAFALGGDDSQVNSVND 295 + S + V D T A T F +N+ Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 296 IDLTTEAGSQSAISTIDAAISQIDSQRADLGAVQNRMNFTINNLSNIQSNVSDARSRIQD 355 + + + +++ID+A+S++D+ R+ LGA+QNR + I NL N +N++ ARSRI+D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 356 VDFAKETAELTKQQILSQTSSAMLAQANQLPQAALSLL 393 D+A E + ++K QIL Q +++LAQANQ+PQ LSLL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>FLAGELLIN#Flagellin signature. Length = 507 Score = 30.4 bits (68), Expect = 0.014 Identities = 38/263 (14%), Positives = 70/263 (26%), Gaps = 12/263 (4%) Query: 104 AESQKIGSAAVADATAALGEGSLTFGVDGKDFTVAVEAGDSLETVMKKINDAEDNVGVTA 163 K + ++ G T+ V + V V +G + D V V A Sbjct: 174 VNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDT--TAPTVPDKVYVNA 231 Query: 164 TIINGDNGPQLVMTSDKTGTANNITVAATDTDGGTGLAKTFTMTELSAAKDAVLYVDGLK 223 T+ T + G K + K +D Sbjct: 232 ANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKT 291 Query: 224 VTSASNEVENVITGVSLTLKDEDLSKSTTLTISPDTDSVKKSVEGFVEAYNALMGTVSDL 283 + +V I G +TL D++ + S K V + Sbjct: 292 GNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNE 351 Query: 284 SSYDAETEQAGILQGDSMIRSLQSQLRGVLSSSFDTSEGTTMLA----------NIGIKT 333 S+ ++ E ++G+S I ++ + T G TM Sbjct: 352 SAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAA 411 Query: 334 TQQGTLEIDEDILDKALNSDMSQ 356 + + +D AL+ + Sbjct: 412 AAKKSTANPLASIDSALSKVDAV 434
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 440 bits (1132), Expect = e-153 Identities = 172/480 (35%), Positives = 264/480 (55%), Gaps = 19/480 (3%) Query: 7 RILLVGNQSERINRLSCVFEFLGEQVELID-----FDKLETYTKQTRFRAIVLPSENQSK 61 IL+ + + L+ G V + + + +V+P EN + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN-AF 63 Query: 62 ELIQSLTGTLPWQPFLMLGERGDIKT------SNILGCIEEPLNYPQLTELLHFCQVYGQ 115 +L+ + P P L++ + T + +P + +L ++ + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 116 VKRPEIPTSANQTKLFRSLVGRSEGIANVRHLINQVAGSDATVLVLGQSGTGKEVVARNI 175 + ++ + LVGRS + + ++ ++ +D T+++ G+SGTGKE+VAR + Sbjct: 124 RRPSKLEDDSQD---GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 176 HYISERRNGPFIPVNCGAIPPELLESELFGHEKGSFTGAISARKGRFELAEKGTLFLDEI 235 H +RRNGPF+ +N AIP +L+ESELFGHEKG+FTGA + GRFE AE GTLFLDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 236 GDMPLQMQVKLLRVLQERMFERVGGSKSISADVRVVAATHRNLETMIEKGDFREDLYYRL 295 GDMP+ Q +LLRVLQ+ + VGG I +DVR+VAAT+++L+ I +G FREDLYYRL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 296 NVFPIEMPALCERKEDIPLLLQELVSRVYNEGRGRVRFTQRAIESLKEHLWSGNVRELSN 355 NV P+ +P L +R EDIP L++ V + EG RF Q A+E +K H W GNVREL N Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 356 LVERLTILYPGGLVDVNDLPIKYRHIDVPEYCVEISEEQQERDALASIFNDEEPIEIPET 415 LV RLT LYP ++ + + R ++P+ +E + + +++ EE + Sbjct: 361 LVRRLTALYPQDVITREIIENELRS-EIPDSPIEKAAARSGSLSISQAV--EENMRQYFA 417 Query: 416 RFPSELPPEGVNLKDLLAELEIDMIRQALDQQDSVVARAAEMLGIRRTTLVEKMRKYGLS 475 F LPP G+ +LAE+E +I AL +AA++LG+ R TL +K+R+ G+S Sbjct: 418 SFGDALPPSGL-YDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 461 bits (1189), Expect = e-162 Identities = 172/483 (35%), Positives = 251/483 (51%), Gaps = 39/483 (8%) Query: 1 MSEGKLLLVEDDASLREALLDTLMLAHYDCVDVASAEEAILSLKANRYDMVISDVQMEGV 60 M+ +L+ +DDA++R L L A YD ++A + A D+V++DV M Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 GGIGLLNYMQQHHPKIPVLLMTAYATIDNAVNAMKLGAVDYLAKPFSSEVLLNQVSRYL- 119 LL +++ P +PVL+M+A T A+ A + GA DYL KPF L+ + R L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 ---------PAKVVEGTPIVADEKSI-ALLALAQRVAASDASVMIMGPSGSGKEVLARYI 169 +G P+V ++ + + R+ +D ++MI G SG+GKE++AR + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 170 HQNSQRVDQPFVAINCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTLLLDEI 229 H +R + PFVAIN AAIP +++E+ LFG+EKGAFTGA G+FEQA+GGTL LDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 230 SEMEVGLQAKLLRVLQEREVERLGGRKTIKLNVRVLATSNRDLKAMASSGEFREDLYYRI 289 +M + Q +LLRVLQ+ E +GGR I+ +VR++A +N+DLK + G FREDLYYR+ Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 290 NVFPLTWPSLNQRPADILPLARHLLQRHALIANRSEIPEFSECATRRLLTHRWPGNVREL 349 NV PL P L R DI L RH +Q+ ++ F + A + H WPGNVREL Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAE--KEGLDVKRFDQEALELMKAHPWPGNVREL 358 Query: 350 DNVVQRALILSVSAEVTAADI----------------IIDSQELGFTAEV-------IPM 386 +N+V+R L +T I S L + V Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 387 VESKPAELDGLGDELKAQEHVIILETLTQCDGSRKLVAEKLGISARTLRYKMAKMRELGI 446 L E+ +IL LT G++ A+ LG++ TLR K+RELG+ Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRK---KIRELGV 475 Query: 447 QIP 449 + Sbjct: 476 SVY 478
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 270 bits (693), Expect = 4e-94 Identities = 126/246 (51%), Positives = 180/246 (73%), Gaps = 3/246 (1%) Query: 2 MKWILVIVGLTLCLAAPAAFAENGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAM 61 M+ +L + + L L P AFA+ LP +T G +S+ +Q L+ +T+L+FIPA+ Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQ---LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAI 57 Query: 62 VIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMSPVFDKIYDQAVQPYI 121 ++M+TSFTRII+V +LR A+G P NQVL+G+++F+TFFIMSPV DKIY A QP+ Sbjct: 58 LLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFS 117 Query: 122 EQGMPLQDAFTKGQGPLKDFMLAQTRLTDLDTFIEISGYQNINEPEDAPMTVIIPAFITS 181 E+ + +Q+A KG PL++FML QTR DL F ++ + PE PM +++PA++TS Sbjct: 118 EEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTS 177 Query: 182 ELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMG 241 ELKTAFQIGF +F+PFL++DLV+AS+LMA+GMMM+ P ++LPFK+MLFVLVDGW L++G Sbjct: 178 ELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVG 237 Query: 242 TLANSF 247 +LA SF Sbjct: 238 SLAQSF 243
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 42.8 bits (101), Expect = 4e-09 Identities = 24/81 (29%), Positives = 44/81 (54%) Query: 4 ESLVDIFREALAVIVIIVSMIIVPGLIIGLVVAVFQAATSINEQTLSFLPRLLTTLLALM 63 + LV +AL +++I+ + IIGL+V +FQ T + EQTL F +LL L L Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 LMGHLLIQMMMDFFMQMVDMI 84 L+ ++++ + Q++ + Sbjct: 62 LLSGWYGEVLLSYGRQVIFLA 82
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 120 bits (302), Expect = 5e-35 Identities = 80/243 (32%), Positives = 139/243 (57%), Gaps = 1/243 (0%) Query: 15 YLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVTVTAAVAPVLPAMPNIDLFSLSAAFVT 74 Y WPL R+ ++ + + P RV+L L++ +T A+AP LPA ++ +FS A ++ Sbjct: 16 YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA-NDVPVFSFFALWLA 74 Query: 75 AQQIIIGVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVVGNFFLLLTT 134 QQI+IG+A+GF G+IIG+Q L FA+ VDP+S PV+ +L Sbjct: 75 VQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLAL 134 Query: 135 MIFLAVDGHLLLIKMVIASFESIPVSMQGLSLASYRLFTEFVGYMFGAALTMSLSAIVAL 194 ++FL +GHL LI +++ +F ++P+ + L+ ++ T+ +F L ++L I L Sbjct: 135 LLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLL 194 Query: 195 LTINLSFGVMTRASPQLNIFAIGFPVTMVAGLFILWLTLSPIMSHFDEVWRETQILLCNA 254 LT+NL+ G++ R +PQL+IF IGFP+T+ G+ ++ + I + ++ E LL + Sbjct: 195 LTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADI 254 Query: 255 LEL 257 + Sbjct: 255 ISE 257
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 339 bits (871), Expect = e-117 Identities = 108/359 (30%), Positives = 181/359 (50%), Gaps = 15/359 (4%) Query: 7 SQEKTEEATSRKLQQAKDKGQVARSKDLGTSAVLIAASVGLLMTGPNIAQAMFNIMNKMY 66 S EKTE+ T +K++ A+ KGQVA+SK++ ++A+++A S L+ F +K+ Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSD----YYFEHFSKLM 57 Query: 67 TLSRDEIFD--TNQMMNVWGVVGSELAFPLLGFIVFLALIAFAGNIALGGISFSVSAFMP 124 + ++ + + + V V E + + AL+A A ++ G S A P Sbjct: 58 LIPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKP 117 Query: 125 KASKMSPVAGFKRMFGVQAVVELAKGIAKFSVVAITAYLLLSIYLNDILLLSQEHLPGNI 184 K++P+ G KR+F ++++VE K I K +++I ++++ L +L L I Sbjct: 118 DIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPT----CGI 173 Query: 185 YHALDLIVWIFILLCAST----LLIVMIDVPFQIWNHAKQLKMTKQEIKDEYKDTEGKPE 240 L+ I L ++I + D F+ + + K+LKM+K EIK EYK+ EG PE Sbjct: 174 ECITPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPE 233 Query: 241 VKGRIRQLQREMAQRRMMGEVPNADVIVVNPEHYAVAVKYDAGRSTAPFVVAKGVDEVAF 300 +K + RQ +E+ R M V + V+V NP H A+ + Y G + P V K D Sbjct: 234 IKSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQ 293 Query: 301 KIREIAREHDVAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR-QYQKGK 358 +R+IA E V I+ PLARA+Y +D IP A A+VL ++ + + Q + Sbjct: 294 TVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSE 352
>PF05272#Virulence-associated E family protein Length = 892 Score = 37.7 bits (87), Expect = 1e-04 Identities = 42/265 (15%), Positives = 74/265 (27%), Gaps = 43/265 (16%) Query: 59 SSAMFTDLAEERVTLGVQSGGRAPNVRAESRA----NPTP-----APDSLQALLERQQSR 109 + A+ D++ G GG P R S P D L+ + +R Sbjct: 380 ARALLADVSSPTAAAGGAGGGEPPKKRDPSAGAGTDPGGPGGGDDGEDPFGEWLDDEVAR 439 Query: 110 ISQQTQSRSSDEL--------DMPEWAKGLQAQVKKNEPVKAEFTP-NRAPDSFNGQKQN 160 + + + P A + + +PV P +AP Sbjct: 440 LRLRGRWLLKPRRAALIEALRSAPALAGCVAFDELREQPVAVRAFPWRKAPGPLEDADVL 499 Query: 161 NTAEIDAMKQELASIRNLLTHQVSSLMVEQKNRIDPVGAMLESKLLD--AEFSPAIAKKL 218 A+ T + + + NR+ P ++++ D + L Sbjct: 500 RLADYVETTYGTGEASAQ-TTEQAINVAADMNRVHPFRDWVKAQQWDEVPRLEKWLVHVL 558 Query: 219 SSLSEHYSPAE-----------LVASLPRSLANMLDNQGDDIVRQGGVVAFVGPTGVGKT 267 + Y P L+ + R + G + V G G+GK+ Sbjct: 559 GKTPDDYKPRRLRYLQLVGKYILMGHVARVM-----EPG---CKFDYSVVLEGTGGIGKS 610 Query: 268 TTVAKLAARFAAYHGSDQVALITTD 292 T + L SD I T Sbjct: 611 TLINTL---VGLDFFSDTHFDIGTG 632
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 1e-23 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 14 KILVVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQKGDFDFVVTDWNMPGMQGI 73 ILV DD + +R ++ L G++ + +T + GD D VVTD MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 74 DLLKAIRADDNLKHLPVLMVTAEAKREQIITAAQAGVNGYVVKPFTAATLKEKLEKIFER 133 DLL I+ LPVL+++A+ I A++ G Y+ KPF L + + Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 134 L 134 Sbjct: 122 P 122
>PF06580#Sensor histidine kinase Length = 349 Score = 43.7 bits (103), Expect = 2e-06 Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 10/77 (12%) Query: 448 DLDKNLVEALADPLV--HLVRNSVDHGIEMPDAREENGKTRTGTITLSASQEGDHILLKI 505 ++ +++ P++ LV N + HGI + G I L +++ + L++ Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEV 296 Query: 506 EDDGAGMDPDKLKGIAI 522 E+ G+ + + Sbjct: 297 ENTGSLALKNTKESTGT 313
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 5e-14 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 7/135 (5%) Query: 2 GIKVLVVDDSSFFRRRVSEIVNQDPELEVVGTACNGAEAVKMAAELNPQVITMDIEMPVM 61 G +LV DD + R +++ +++ V N A + A + ++ D+ MP Sbjct: 3 GATILVADDDAAIRTVLNQALSR--AGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGITAVKEIMASKP-IPILMFSSLTHDGAKATLEALDAGALDFLPKRF--EDIASNKDDA 118 + + I ++P +P+L+ S+ + ++A + GA D+LPK F ++ A Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSA--QNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 119 IALLQQRIRALGRRR 133 +A ++R L Sbjct: 119 LAEPKRRPSKLEDDS 133
>INTIMIN#Intimin signature. Length = 939 Score = 28.9 bits (64), Expect = 0.019 Identities = 22/106 (20%), Positives = 38/106 (35%) Query: 109 SSSQAVNLKSSDLVVDESKAESGSRQEPVKVNSLLEPEQKKASNNVIANAEQQAVASERD 168 S V LKS A++ + N+++ +Q KAS I + AVA+ +D Sbjct: 617 SGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQD 676 Query: 169 ITAGLSDKPEERNTPSNMNAAFSSKRVPKHAVTLTETPDGVKLISL 214 + SN F++ T +G ++L Sbjct: 677 AITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTL 722
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 65.6 bits (160), Expect = 3e-16 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 10/98 (10%) Query: 6 NPKK-AVALSYQPGT--APKVSAKGEDRLAEEIIALAQQAGIPIHQDEYLCDFL-QRLEV 61 NP A+ + Y+ G P V+ K D + + +A++ G+PI Q L L V Sbjct: 263 NPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALV 322 Query: 62 GDEIPSELYLLIAELIAFVYVLDGKFPEKWNNMHQKIM 99 IP+E AE++ ++ H +++ Sbjct: 323 DHYIPAEQIEATAEVLRWLERQ------NIEKQHSEML 354
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 225 bits (574), Expect = 5e-76 Identities = 86/208 (41%), Positives = 121/208 (58%), Gaps = 3/208 (1%) Query: 39 PRDPIEGFNRAMWDFNYLFMDRYFYRPVAHGYNDYIPHPVKSGVNNFVLNLEEPSTLVNN 98 DP+EGFNR M++FN+ +D Y RPVA + DY+P P ++G++NF NLEEP+ +VN Sbjct: 28 RSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNY 87 Query: 99 TLQGNWGWAANAGGRFTVNTTLGLLGVIDVAEMMGMTRK---QDAFNEVLGYYGVPNGPY 155 LQG+ RF +NT LG+ G IDVA M + F LG+YGV GPY Sbjct: 88 FLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPY 147 Query: 156 FMAPFFGPYVTRELASDWVDDLYFPLSELTFWQSVLKWGLKNLHTRASAIDQERLVDNAL 215 PF+G + R+ D D LY LS LT+ SV KW L+ + TRA +D + L+ + Sbjct: 148 VQLPFYGSFTLRDDGGDMADALYPVLSWLTWPMSVGKWTLEGIETRAQLLDSDGLLRQSS 207 Query: 216 DPYTFVKDAYFQHMDYKVYDGDIPQSDD 243 DPY V++AYFQ D+ G++ ++ Sbjct: 208 DPYIMVREAYFQRHDFIANGGELKPQEN 235
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.4 bits (240), Expect = 5e-24 Identities = 30/101 (29%), Positives = 45/101 (44%) Query: 7 TILFVEDDPVFRKLVTSYLESRGADVTEAENGEQGLISFKSQQFDIVIADLSMPKLGGLD 66 TIL +DD R ++ L G DV N + D+V+ D+ MP D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 67 MLEAMNQHSPSTPSIIISGNQAMSDVIEALRRGASDYLVKP 107 +L + + P P +++S I+A +GA DYL KP Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 2e-19 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 6/163 (3%) Query: 12 KIIVVEDCYSERCLLLTLLESMGFTAQGFSNAQEAIELLQREHVDMVITDWMMPKISGIE 71 I+V +D + R +L L G+ + SNA + D+V+TD +MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 72 LCKTIKSMPCSPYTILLTGNSQNAHLIEGIESGADDFIAKPF---HSGVLKVRILAGLRI 128 L IK ++++ + I+ E GA D++ KPF + R LA + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK- 123 Query: 129 IAMQQKLESHNQALNNMLLKEQGYLNNLKHDLSLAAQLQRALL 171 KLE +Q ++ + + + L+ Q L+ Sbjct: 124 -RRPSKLEDDSQDGMPLVGRSAA-MQEIYRVLARLMQTDLTLM 164
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 9e-18 Identities = 28/102 (27%), Positives = 51/102 (50%) Query: 878 ILLAEDSPANQIVASALLSKAGFKVEIANNGIEALKMASAKDYGLILMDMRMPEMDGIEA 937 IL+A+D A + V + LS+AG+ V I +N + +A D L++ D+ MP+ + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 938 TQKILQRNPSQVVIAMTANVQKEDVEQCMNAGMKAFVPKPVN 979 +I + P V+ M+A + G ++PKP + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD 107
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 490 bits (1262), Expect = e-173 Identities = 163/484 (33%), Positives = 255/484 (52%), Gaps = 16/484 (3%) Query: 5 SSFTTLLVEDSMSLGALYTEYLRTEGARVTHVNHGSDALNELKRWQPDLLVLDIQLPDMS 64 + T L+ +D ++ + + L G V ++ + + DL+V D+ +PD + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 65 GMDILEIVQSEYPDVTVIMITAHGSIDIAVDAMRSGAFDFLIKPFDAKRLSITVRNALKQ 124 D+L ++ PD+ V++++A + A+ A GA+D+L KPFD L + AL + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 125 RQLVNLVAKYESSLPKPHYMGFIGESLAMQTVYKTIDCVASSKASAFIIGESGTGKEVCA 184 + + M +G S AMQ +Y+ + + + + I GESGTGKE+ A Sbjct: 122 PKR----RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVA 177 Query: 185 HAIHNAGNRSDGPFVALNCASIPKDLIESEIFGHTKGAFTGAIANRDGAATRAHKGTLFL 244 A+H+ G R +GPFVA+N A+IP+DLIESE+FGH KGAFTGA G +A GTLFL Sbjct: 178 RALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFL 237 Query: 245 DEICEMDLELQSKLLRFIQTGVFQRVGATKEEKVDVRFVSATNRMPWDEVKAGRFREDLF 304 DEI +M ++ Q++LLR +Q G + VG + DVR V+ATN+ + G FREDL+ Sbjct: 238 DEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLY 297 Query: 305 YRLHVIPIELPPLRMRGKDILLLASSLLKEYNKEEGKTFKGFSPEAKQCLKSYPWPGNVR 364 YRL+V+P+ LPPLR R +DI L +++ K EG K F EA + +K++PWPGNVR Sbjct: 298 YRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEK-EGLDVKRFDQEALELMKAHPWPGNVR 356 Query: 365 QLQNVIRQIVVLNDSETIEIDMLPIQLTSTSAIKSEVAKPQAAVVKSQSLRGDSDASSFL 424 +L+N++R++ L + I +++ +L S I + AA S S+ + + Sbjct: 357 ELENLVRRLTALYPQDVITREIIENELRSE--IPDSPIEKAAARSGSLSISQAVEENMRQ 414 Query: 425 DGIERAAFSGSEQYAKSANEKSDDIVPLWKTEKQTIENAIARCDGNVPKAAALLDISAST 484 L + E I A+ GN KAA LL ++ +T Sbjct: 415 YFASFGDALPPSGLYDRV---------LAEMEYPLILAALTATRGNQIKAADLLGLNRNT 465 Query: 485 IYRK 488 + +K Sbjct: 466 LRKK 469
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 52.5 bits (126), Expect = 9e-10 Identities = 46/210 (21%), Positives = 80/210 (38%), Gaps = 30/210 (14%) Query: 1 MRILITGAAGQLG----QALLS----IAGLTQVNLAERTVAQQMLVALLPEALECIETTD 52 M+ L+TGAAG +G + LL + G+ +N +Q + LL + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP-------- 52 Query: 53 EVIGVSHQALDICDIDSIRKAFDTIAPDVVINCAAYNAVDKAEFDIDKAMLINAEGPKLL 112 G +D+ D + + F + + V AV + + N G + Sbjct: 53 ---GFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNI 109 Query: 113 AGECQRHNI-RLVHISTDFVFDGELLRAYTEQDSPA-PLSVYGKSKLEGERWV---SDIL 167 C+ + I L++ S+ V+ ++ DS P+S+Y +K E S + Sbjct: 110 LEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY 169 Query: 168 GSKATIIRTSWLYSCYG------HNFVKTM 191 G AT +R +Y +G F K M Sbjct: 170 GLPATGLRFFTVYGPWGRPDMALFKFTKAM 199
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 29.8 bits (67), Expect = 0.013 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%) Query: 211 MQEGDVIACAAFERYVDRLARSLAHVINVLDP-DIIVLGGGV 251 + GD A A + R+ +++ + D+IV G+ Sbjct: 291 FKNGDKRAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGI 332
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.4 bits (146), Expect = 2e-13 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 12/129 (9%) Query: 7 PKGIAEQATEKAAEQNVRVALIRAANQCFTASDYDSVSIRKIAQQAGVNMAMIRYYFGNK 66 + ++A E R ++ A + F+ S S+ +IA+ AGV I ++F +K Sbjct: 2 ARKTKQEAQET------RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDK 55 Query: 67 LGLFEAMVTEQIHPIHQRAKTLQKHQAK---PTIADLINEFYQTMIPNPDFPRF---LFR 120 LF + I + Q + +++ ++ + +F Sbjct: 56 SDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFH 115 Query: 121 LMNSDGSSE 129 G Sbjct: 116 KCEFVGEMA 124
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.4 bits (131), Expect = 5e-10 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 60/289 (20%) Query: 110 RLAQAQADRKALEGQIEGKKLQLENLKLSLEIENNRYDLVKSDLKRKETLRKQNLISQSE 169 + + Q + E ++ K+ + + + N + KS L +L + I+ Sbjct: 194 QFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA--- 250 Query: 170 LDGERQNLLAQQQKLQELDNSLN-----LMPNETQILQA-----------------QLLQ 207 + +L Q+ K E N L L E++IL A +L Q Sbjct: 251 ----KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQ 306 Query: 208 AIAREQEAQSQLTK-------TEIRLPFEGRVAEVNV--EGSQVVSPQQVLARINGIEVM 258 +L K + IR P +V ++ V EG V + + ++ + + + Sbjct: 307 TTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTL 366 Query: 259 EVEAQVSLGDVMTLMKTVNRPQGQDKQLPRAEALGLTAEITLKGATYSF--SWPAEITRI 316 EV A V D+ G A I ++ Y+ ++ I Sbjct: 367 EVTALVQNKDI-------------GFINV-----GQNAIIKVEAFPYTRYGYLVGKVKNI 408 Query: 317 G--ETVDPTLATVNIVLQVEQQYRELKIGQSPPLVNGMFVSARIKGGER 363 D L V V+ ++ ++ PL +GM V+A IK G R Sbjct: 409 NLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMR 457
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 447 bits (1152), Expect = e-142 Identities = 216/1051 (20%), Positives = 439/1051 (41%), Gaps = 55/1051 (5%) Query: 1 MIGFFVRHPTATSLLMLAFIVLGIKALPELKRETFPEFSKSYITAQVVLPGASPQDVEEN 60 M FF+R P +L + ++ G A+ +L +P + ++ PGA Q V++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 LCLRMEDAVDSLGSIIETKCDAL-EGVARMTLKLDDKADLSRSLVDVQTKISAIKD-FPA 118 + +E ++ + +++ + G +TL D + V VQ K+ P Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 EIEPPIVEELDFNERII----DIAVSASTSKPELKAYAED-LKRRLKLDTSISQVEISGF 173 E++ + + + ++ + T++ ++ Y +K L + V++ G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 174 SSHQLLVEVSLGAIKRLGMSVADVAKQIEQQNVQLPSGTVETPSK------NILIRFDQR 227 + + + + + + + ++ DV Q++ QN Q+ +G + N I R Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 228 EVEPERLANIVIRSDAQGGVVRLRDIATITDRFELDEESIRFDGEQAAILTVFKNKSQDS 287 PE + +R ++ G VVRL+D+A + E R +G+ AA L + ++ Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 288 LRLKEEIIGFLDAEKLRTPNGITISTSNDLSSLLWDRLTMLVKNGWQGVVLVFLCMWLF- 346 L + I L + P G+ + D + + + +VK ++ ++LVFL M+LF Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 347 FSLRYSFWVAMGLPVAFMGSLFFMAQLGLTINIMTLVAFLMAIGIMMDDAIVIAESIA-A 405 ++R + + +PV +G+ +A G +IN +T+ ++AIG+++DDAIV+ E++ Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 406 HIERGMNKADAVIQGVKRVLPGVVSSFLTTVFIFSSIAFMEGDMGKVLRVIPQTLLLILT 465 +E + +A + + ++ +V + +F +AF G G + R T++ + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 466 VSLVEAFLILPNHLAHAAKGKERKTSRFKQAFNQKFE---YFRTVQLVAAVEWVINWRYV 522 +S++ A ++ P A K + K F F +V ++ Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 523 FMGSMVSLLFISISLAAGGAIKFVGFPELDGDVAEARIILPPGSTLEQTELVVNRIVSVA 582 ++ ++ + L F PE D V I LP G+T E+T+ V++++ Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSF--LPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYY 597 Query: 583 KALDAKYSDKEDGQRLVQHITERFNFNADAGESGAHVATVKIDLLSAEVRQTLMSTFI-R 641 + V+ + F+ A +A V + + + Sbjct: 598 LKNEKA---------NVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIH 648 Query: 642 EWQQGVGEMVDPIAIVFKQPK---MGPAGRA--IEIRVRGDNLDQLKSASIEV-QQYLQG 695 + +G++ D I F P +G A I G D L A ++ Q Sbjct: 649 RAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQH 708 Query: 696 FNGVSGVMDSMRPGKAEILMTLKPG-AEAFGVN----GMMLASQLRGAYFHQTADNIQVG 750 + V + A+ + + A+A GV+ +++ L G Y + Sbjct: 709 PASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVND----FIDR 764 Query: 751 PESIQIDVQLDKADAAKLENLANFPISIGSAGEQVPLSAVANFEWQRGYVKISRLDGMRF 810 ++ VQ D E++ + + GE VP SA W G ++ R +G+ Sbjct: 765 GRVKKLYVQADAKFRMLPEDVDKLYVRS-ANGEMVPFSAFTTSHWVYGSPRLERYNGLPS 823 Query: 811 VTITGEVDTHLANASEINNAFKDELLPELKQRYP-GIRVSYEGEVKESKTTQNSMASGFI 869 + I GE A ++ L+ L + P GI + G + + + N + Sbjct: 824 MEIQGEA------APGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVA 877 Query: 870 VGLLAVFAILSLQFKSYIEPLVVMAVIPLGLIGVLWGHLLLGYSMSMPSILGFVALAGVV 929 + + VF L+ ++S+ P+ VM V+PLG++GVL L + ++G + G+ Sbjct: 878 ISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLS 937 Query: 930 VNDSILLVQYIR-YHVEEGQSVHQAVVSASKERFRAVFITSLTTAAGMLPLLLETSIQAQ 988 ++IL+V++ + +EG+ V +A + A + R R + +TSL G+LPL + + Sbjct: 938 AKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSG 997 Query: 989 VLQPLVVSMVFGIFASTALVLFMVPACYAIL 1019 + + ++ G+ ++T L +F VP + ++ Sbjct: 998 AQNAVGIGVMGGMVSATLLAIFFVPVFFVVI 1028
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 28.2 bits (62), Expect = 0.048 Identities = 11/40 (27%), Positives = 24/40 (60%) Query: 230 LVVIRTISDKADGSAHLVYEEAKQVTADNSVAITLNMLSQ 269 L +I+++SD +D S L ++ K+ N+ +I +N + + Sbjct: 193 LNLIKSLSDDSDSSDLLFSQKFKEKLELNNKSIDINFIKE 232
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 41.9 bits (98), Expect = 6e-07 Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 11 QSNRSDGQARRIEILEATLRLIVKEGIRGVRHRAVATEANVPLSSTTYYFNDIKDLI 67 + + + Q R IL+ LRL ++G+ +A A V + ++F D DL Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF 59
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.9 bits (158), Expect = 2e-13 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 120 QSVKVLVADDSLVSRKFIRSLLEQHLFQVIEADDGISALETLNDNPDIKLLITDYNMPGL 179 +LVADD R + L + + V + + + L++TD MP Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE 60 Query: 180 DGFGLIIKVREQFSREELVIIGLSSDSDESLSARFIKNGANDFLQKPFVHEE 231 + F L+ ++++ ++++ + ++ A + GA D+L KPF E Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKA--SEKGAYDYLPKPFDLTE 110 Score = 53.7 bits (129), Expect = 5e-10 Identities = 20/116 (17%), Positives = 48/116 (41%), Gaps = 5/116 (4%) Query: 2 RILVVEDSKTVSRVMRHLLTQELSCEVDVAPDMGSAKELLAQNEYFVAITDLNLPDAQEG 61 ILV +D + V+ L++ +V + + + +A + + +TD+ +PD Sbjct: 5 TILVADDDAAIRTVLNQALSRA-GYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 EIVKFVLA--KQIPCIVLTGSWDAEQRERLLQLGIVDYVFKENRFSYEYTAKLVKR 115 +++ + +P +V++ + + G DY+ K F ++ R Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP--FDLTELIGIIGR 117
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.5 bits (113), Expect = 2e-07 Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 17/226 (7%) Query: 653 KGDMAPLVSQIQQKLQFIQTQQIQLAALSSQLRSQQQSVTQTVSRLAKVEQELNEAQQEL 712 KGD+ ++ + + ++TQ L A Q R Q S + +++L +++ Q + Sbjct: 120 KGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNV 179 Query: 713 QALQLSVELRVQQQQHFSEALEKAQAAKTDGQALKAQALEKVTQLKPLRQQLDAQVAQTA 772 ++ + ++Q + +K Q + +K + + +++ + Sbjct: 180 SEEEVLRLTSLIKEQFSTWQNQKYQ--------KELNLDKKRAERLTVLARINRYENLSR 231 Query: 773 ASEQSLHTQMMLIEQQVNQHQQRLLELEQSQTVLKLQLEAKDNALQEGESQPLKDQLEQA 832 + L L+ +Q + +LE E +L + L++ ES+ L + E Sbjct: 232 VEKSRLDDFSSLLHKQAIA-KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ 290 Query: 833 LQAQQLKQDALTALRLEQAELQELCDSAGTNKKQQLAKLEDLTQSS 878 L Q K + L LR + L +LAK E+ Q+S Sbjct: 291 LVTQLFKNEILDKLRQTTDNIGLL--------TLELAKNEERQQAS 328 Score = 39.4 bits (92), Expect = 7e-05 Identities = 24/208 (11%), Positives = 65/208 (31%), Gaps = 11/208 (5%) Query: 606 VGVDFVIEKTQAAGSIVELKNEQI-ALQESVDLNQSALVKLSETLVSLKGDMAPLVSQIQ 664 +G + KTQ++ L+ + L S++LN+ +KL + ++ Sbjct: 130 LGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTS 189 Query: 665 QKLQFIQTQQIQLAALSSQLRSQQQSVTQTVSRLAKVEQELNEAQQELQALQLSVELRVQ 724 + T Q Q L ++ ++R+ + E + L + + Sbjct: 190 LIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAI 249 Query: 725 QQQHFSEALEKAQAAKTDGQALKAQALEKVTQLKPLRQQLDAQVAQTAASEQSLHTQMML 784 + A+ + + + ++ Q++ + ++ Sbjct: 250 AKH----AVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN------E 299 Query: 785 IEQQVNQHQQRLLELEQSQTVLKLQLEA 812 I ++ Q + L + + +A Sbjct: 300 ILDKLRQTTDNIGLLTLELAKNEERQQA 327
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 33.0 bits (75), Expect = 0.001 Identities = 17/55 (30%), Positives = 24/55 (43%) Query: 140 PVITEQAVRTEPEPRLQPVFKPEPQLEPVELKPDPIVEPAPKQEQTEELGEPRDV 194 V EPEP +P+ +P + V KP P +P PK + + RDV Sbjct: 60 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDV 114 Score = 31.9 bits (72), Expect = 0.003 Identities = 13/51 (25%), Positives = 21/51 (41%) Query: 134 EISVAAPVITEQAVRTEPEPRLQPVFKPEPQLEPVELKPDPIVEPAPKQEQ 184 +++ P E +P P +PEP+ P K P+V PK + Sbjct: 46 SVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 96
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 428 bits (1103), Expect = e-135 Identities = 218/1053 (20%), Positives = 423/1053 (40%), Gaps = 66/1053 (6%) Query: 23 IAGYSMRNSVVSWLIIMVLAIGGILAFNDLGRLEDPEFTPRSALIVTAYPGASPEQVEEE 82 +A + +R + +W++ ++L + G LA L + P P + + YPGA + V++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 83 VTLLIESALQQLPSVKWIKSVST-AGLSQVDVMMESEYTSLHLPQIWDEVRRKIGDLRT- 140 VT +IE + + ++ ++ S S AG + + +S T + Q +V+ K+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSG-TDPDIAQ--VQVQNKLQLATPL 117 Query: 141 LPPGASKP-IVNDDFGDVYGMIWGITGDG--YEMAELEQFAD-QLRRDVVTLEGVSKVMI 196 LP + I + Y M+ G D ++ + ++ + L GV V + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 197 GGIQQQQVFVEISNSKIAALNIPIDHITALLQQQNTVSNAGRV------RIQDDTVRLFP 250 G Q + + + + + + L+ QN AG++ Q + Sbjct: 178 FG-AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 251 TGEFQDISELRDLVISPVGASARILLGDVAEIRRGYVEVPTKLMSMNGLPALEFGVSFMP 310 F++ E + + + + L DVA + G E + +NG PA G+ Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKLAT 295 Query: 311 GENVIEVGARVQAHIDSMLNKQPVGIEMENIYNQPTQVEKAVDGFVWSLIEAVAIVIGVL 370 G N ++ ++A + + P G+++ Y+ V+ ++ V +L EA+ +V V+ Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 371 LLTMG-LKSGIIIGIVLILSVTGTFIFMEQMGIDLQRISLGALIIALGMLVDNAIVVVEG 429 L + +++ +I I + + + GTF + G + +++ +++A+G+LVD+AIVVVE Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 430 ILIGMQRGKSRFRAAI-DIVEQTKWPLLGATVIAVTAFAPIGLSEDISGELVGSLFWVVL 488 + M K + A + Q + L+G ++ F P+ +G + ++ Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 489 ISLTLSWITAITTTPFLAAIFFKNTKPATEGEEVDPYKGV-------IFTSYRKFLKICI 541 ++ LS + A+ TP L A K A E + G Y + + Sbjct: 476 SAMALSVLVALILTPALCATLLK-PVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 542 RRRKTTMLVLLVLLLGSVKGFGMLKNEFFPPMNLPKFMVDTWLPYSTDIRATAEEIQAME 601 +L+ +++ G V F L + F P + F+ LP T + + + Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 602 QLVLSH--PEVTQVASSVGGGHVRFMLAYKPEKMYNNYGNLMVTIKDMDKLT----DVMT 655 L + V V + G N G V++K ++ Sbjct: 595 DYYLKNEKANVESVFTVNGFS---------FSGQAQNAGMAFVSLKPWEERNGDENSAEA 645 Query: 656 DVRALLEDNFAGANYNFKRFEMGPAPDGRIEARFQ-------GPDPEVLRDLSNQAKAIM 708 + + + F M + F G + L NQ + Sbjct: 646 VIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMA 705 Query: 709 ARHEGA-TAVRDDWRERTKVIRPDFNVEAARNLGISKSQVDSALLANFSGRSVGLYREGS 767 A+H + +VR + E T + + + E A+ LG+S S ++ + G V + + Sbjct: 706 AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG 765 Query: 768 DLMPIIVQPPEAERTDINGIMEIQVWSHQLQSYVSLSQVVHSFDVEFEDPIIMRRDRKRT 827 + + VQ R + ++ V S + V S + + P + R + Sbjct: 766 RVKKLYVQADAKFRMLPEDVDKLYVRSANGEM-VPFSAFT-TSHWVYGSPRLERYNGLP- 822 Query: 828 VMVMTDEDQMGDLTTAAVLQSFKAEVESI--ELPEGYTMPWGGKHETSVDALVALGEKLS 885 M + E G + A+ A +E++ +LP G W G + ++ Sbjct: 823 SMEIQGEAAPGTSSGDAM-----ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVA 877 Query: 886 GGYLVMILITILLFSSFKDAAVIWTVVPFAIIGVVVGLYSANMPFTFLALLGTMSLTGML 945 ++V+ L L+ S+ + VVP I+GV++ N ++G ++ G+ Sbjct: 878 ISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLS 937 Query: 946 IKNAIVLVEEIK-LQIKEGKEDYAAVIDASVSRVRPVSMAAVTTVLGMIPLITD-----G 999 KNAI++VE K L KEGK A + A R+RP+ M ++ +LG++PL G Sbjct: 938 AKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSG 997 Query: 1000 FFQAMAVAMMAGLTFATILTLIVIPVMYTMIHR 1032 A+ + +M G+ AT+L + +PV + +I R Sbjct: 998 AQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.0 bits (83), Expect = 2e-04 Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 26/155 (16%) Query: 40 AKIATVVSAAGSVQRSFPAQVSANASTSLAFRVPGQITKRYVTEGKRVEAGTLIAELDPT 99 ++ V +A G + S ++ + + V EG+ V G ++ +L Sbjct: 78 GQVEIVATANGKLTHSGRSKEIKPIEN-------SIVKEIIVKEGESVRKGDVLLKLTAL 130 Query: 100 DFNIHLDDARAKHELAVAQHDRNTTL---------------VPKGLATKAEFDTSRAEML 144 ++ A + R L +E + R L Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 145 MAKANLDRASQ----NLKYTKIYAPYDGVVAQIHS 175 + + +Q L K A V+A+I+ Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINR 225 Score = 35.6 bits (82), Expect = 3e-04 Identities = 20/139 (14%), Positives = 47/139 (33%), Gaps = 20/139 (14%) Query: 150 LDRASQNLKYTKIYAPYDGVVAQ--IHSEDHDHVAATQPIVEF-QNDKVSDIQFDLPEKL 206 L + + + + I AP V Q +H+E V + ++ D ++ + K Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEG-GVVTTAETLMVIVPEDDTLEVTALVQNKD 376 Query: 207 LKQFDPDKFSELSTQVILDSYPEK---PLTATFKEMRKSTSS---GALSFRVTLSVMAK- 259 + + + + ++++P L K + L F V +S+ Sbjct: 377 IGFINVG----QNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENC 432 Query: 260 -----DGMRVLPGMSAKVQ 273 + + GM+ + Sbjct: 433 LSTGNKNIPLSSGMAVTAE 451
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.8 bits (132), Expect = 4e-11 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 15 PTIIIADDHQIVSEGIARLVEK-NYQVQSITTNAEELIQAAKQFQPDIIITDISMPGMQL 73 TI++ADD + + + + + Y V+ T+NA L + D+++TD+ MP Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 74 NQTLGLLKRTCKEAKIICLTMHDEAEILQAAFEYGADGYIVKHQAGFELLQALETVLAGK 133 L +K+ + ++ ++ + A E GA Y+ K F+L + + + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK---PFDLTELIGIIGRAL 119 Query: 134 QYVSAELQE 142 + Sbjct: 120 AEPKRRPSK 128
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.010 Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 323 LSICLNREGKFAKLTIEDNGKGMAQDALANSSSLGIESMLER-AALIGGTIDFTVGHHQC 381 + + ++ L +E+ G ++ S+ G++++ ER L G + Q Sbjct: 281 ILLKGTKDNGTVTLEVENTGSLALKNT-KESTGTGLQNVRERLQMLYGTEAQIKLSEKQG 339 Query: 382 GFSVKLVWP 390 + ++ P Sbjct: 340 KVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 0.001 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 19/154 (12%) Query: 16 NQQILGQ----EQVVKQLVIALLANGHVLIQGLPGLAKT---RAVNEMANEVNAKLNRIQ 68 ++G+ +++ + L + + ++I G G K RA+++ N I Sbjct: 136 GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAIN 195 Query: 69 FTPDMLPADITGSEVYSNQ----TQSISFKPGPVFSH----FLLADEINRAPAKVQSALL 120 +P D+ SE++ ++ T + + G F L DEI P Q+ LL Sbjct: 196 MAA--IPRDLIESELFGHEKGAFTGAQTRSTG-RFEQAEGGTLFLDEIGDMPMDAQTRLL 252 Query: 121 ESMAEGQVSVAGISHPLP-ELFMVLATQNPIEQE 153 + +G+ + G P+ ++ +V AT ++Q Sbjct: 253 RVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQS 286
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 365 bits (939), Expect = e-125 Identities = 119/380 (31%), Positives = 190/380 (50%), Gaps = 36/380 (9%) Query: 111 DYHHLPVDWNHLNQTLGHAYGMALLKQKEQKGCTEFGQKTPLLGDSRSINNLRSNITKVA 170 DY P D L +G A +A K++ K + PL+G S ++ + + ++ Sbjct: 100 DYLPKPFDLTELIGIIGRA--LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLM 157 Query: 171 TSDEAVLISGETGTGKGLCAHLIHNQSRRKIGPFITINCGALPQSLIHSELFGHEKGAFT 230 +D ++I+GE+GTGK L A +H+ +R+ GPF+ IN A+P+ LI SELFGHEKGAFT Sbjct: 158 QTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFT 217 Query: 231 GADKQYIGHIERANKGTLFLDEIGDLTLESQVNLLQFLEEHIIERLGGSRNIAIDCRIIF 290 GA + G E+A GTLFLDEIGD+ +++Q LL+ L++ +GG I D RI+ Sbjct: 218 GAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVA 277 Query: 291 ASHVNLETAVEEGRFREDLYYRINILHLHAPSLRQHKEDIPLLANEYLNLFSPEHHK-YT 349 A++ +L+ ++ +G FREDLYYR+N++ L P LR EDIP L ++ E Sbjct: 278 ATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKR 337 Query: 350 LTPKALDTMLDYEWPGNVRELKNRIHRAIIMASSDQLTAADLGIKI-----------TNI 398 +AL+ M + WPGNVREL+N + R + D +T + ++ Sbjct: 338 FDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAA 397 Query: 399 NPDEHDVVDLAQHRVV----------------------IDTELLLDAIKRNNHNISAAAR 436 + + + ++ L+L A+ N AA Sbjct: 398 RSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAAD 457 Query: 437 ELKISRTTFYRLIKKCKIKL 456 L ++R T + I++ + + Sbjct: 458 LLGLNRNTLRKKIRELGVSV 477
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 487 bits (1254), Expect = e-157 Identities = 211/1051 (20%), Positives = 444/1051 (42%), Gaps = 73/1051 (6%) Query: 3 ITRFALARPVTTTMFFVAILLFGLASSRLLPLEMFPGIDIPQVIVEVPYKGSTPAEVERD 62 + F + RP+ + + +++ G + LP+ +P I P V V Y G+ V+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 ITNVLEESLATMGGIEELRSSSSQNG-AEIDLRMKWGQNVATKSLEAREKIDAVRHLLPK 121 +T V+E+++ + + + S+S G I L + G + ++ + K+ LLP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 DVERVFIRQFSTADMPVLNLRISSDRELSSAFDLLD---KQLKKPLERVEGVSQVTLYGV 178 +V++ I ++ ++ SD ++ D+ D +K L R+ GV V L+G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 179 EQKQIEIRINADKLSASNISVQSLNRRLQQENFVINAGVLKTDSRV------YQVSPKGE 232 Q + I ++AD L+ ++ + +L+ +N I AG L + + + Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 233 FRNLDDITALVLAPG-----ITLGDIANVSFSLPERLDGRHLDQNYAVGLDVFKESGANL 287 F+N ++ + L + L D+A V ++ A GL + +GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 288 VDVSQRVMKVIDEAKRDSQFEGIKLFVMEDQAYGVTSSLRDLLTAGLIGALLSFVVLYLF 347 +D ++ + + E + +G+K+ D V S+ +++ +L F+V+YLF Sbjct: 300 LDTAKAIKAKLAELQPFFP-QGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 348 LRDLKMTLVIVSSVPIAICMTLAAMYFLGYSLNILSMMGLLLAVGMLIDNAVVVTESVLQ 407 L++++ TL+ +VP+ + T A + GYS+N L+M G++LA+G+L+D+A+VV E+V + Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 408 QKQAQIADGSVQEVGVAKINSSAILRGVDKVSLAVLAGTLTTAIVFLPNIFGVKVELTIF 467 A + + ++ A++ + + VF+P F I+ Sbjct: 419 VMMEDKLPP-----------KEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIY 467 Query: 468 LEHVAIAICISLAASLLVAKTLLPLMLSRMSFSQKKAPKK-------------SQLQARY 514 + +I I ++A S+LVA L P + + + + Y Sbjct: 468 RQ-FSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHY 526 Query: 515 QTSLNWILAHPRISGVLAIVILASTALPLSMVKQDQSDGEGNNRLYINYQVEGRHSLDVT 574 S+ IL ++ +I+A + + E Q+ + + T Sbjct: 527 TNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERT 586 Query: 575 EAMITRMETYLYAN--KDEFQIDSVYSYFAADRGQSTLIL-------------KEDTEVD 619 + ++ ++ Y N + + +V + + + Q+ + + E Sbjct: 587 QKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 620 MKALK---KTIREGFPKFAIAKPQFGWGGENNGVRVSLTGRSTT---ELIHLSEQVIPLL 673 + K IR+GF P G G L ++ L Q++ + Sbjct: 647 IHRAKMELGKIRDGF-VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMA 705 Query: 674 S-NIDGLTDVRSELNGAQQEVVIRIDRQMAARLDLKLNEIASSISMALRGSPLRSFRHDP 732 + + L VR + + +D++ A L + L++I +IS AL G+ + F D Sbjct: 706 AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFI-DR 764 Query: 733 SGELRIEMAFEQQWRLSLEKLKQLPVIRIDNRVYTLDSLAKIEILPRFDTIRHYDRQTAL 792 ++ + + ++R+ E + +L V + + + + + Y+ ++ Sbjct: 765 GRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSM 824 Query: 793 SIGANLDE-LTTEEAQDKITQVMENINFPAGYGYSLRGGFQKQDEDEAVMATNMILAIAM 851 I ++ +A + + + PAG GY G ++ + ++ + Sbjct: 825 EIQGEAAPGTSSGDAMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVV 882 Query: 852 IYIVMAALFESLLLPTAIITSILFSITGVFWALLFTGTPMSIMAMIGILILMGIVVNNGI 911 +++ +AAL+ES +P +++ + I GV A + M+G+L +G+ N I Sbjct: 883 VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAI 942 Query: 912 VLVDQINQLSPELDK-LSDTISAVCYTRLRPVLMTVGTTVLGLVPLAMGDTQLGGGGPSY 970 ++V+ L + K + + RLRP+LMT +LG++PLA+ G G + Sbjct: 943 LIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAIS---NGAGSGAQ 999 Query: 971 SPMAIAIIGGLTFSTVTSLYLVPLCYQALYR 1001 + + I ++GG+ +T+ +++ VP+ + + R Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 648 bits (1673), Expect = 0.0 Identities = 248/1100 (22%), Positives = 466/1100 (42%), Gaps = 96/1100 (8%) Query: 3 IIKTAVNRPVTVWMFMFAVILFGMVGFSRLAVKLLPDLSYPTITIRTQYIGAAPVEVEQL 62 + + RP+ W+ +++ G + +L V P ++ P +++ Y GA V+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VSKPIEEAAGIVKGLRKISSISRS-GMSDVVLEFEWGTDMDMASLDVREKLDTIE--LPL 119 V++ IE+ + L +SS S S G + L F+ GTD D+A + V+ KL LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 DVKKPLLLRFNPNLDPIVRLALSVPETSGSTSETMSETELKQMRTYAEEELKRQLESLTG 179 +V++ + + ++ S + ++ ++ Y +K L L G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFV------SDNPGTTQDDI---SDYVASNVKDTLSRLNG 171 Query: 180 VAAVRLSGGLQQEVHIQLNQQKLTQLNLSADLIRSRIAEENINLSAGKVIQGDK------ 233 V V+L G Q + I L+ L + L+ + +++ +N ++AG++ Sbjct: 172 VGDVQLFGA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQL 230 Query: 234 EYLVRTLNQFNSLDELGQIVIFRDEQ-TLVRLFEVAQIVDAFKERNDITRIGDKESIELA 292 + +F + +E G++ + + ++VRL +VA++ + N I RI K + L Sbjct: 231 NASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLG 290 Query: 293 IYKEGDANTVAVARKVTDELNKLNQHNPKA-ELKVIYDQSEFIESAVNEVTSAALIGSLL 351 I AN + A+ + +L +L P+ ++ YD + F++ +++EV +L Sbjct: 291 IKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIML 350 Query: 352 SMLVIYLFLRDIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGIALAVGLLVDNAI 411 LV+YLFL+++ TLI +I++P ++ TF ++ S+N +++ G+ LA+GLLVD+AI Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAI 410 Query: 412 VVLENIDRC-KSLGMNRLEAAVTGTKEVSGAIFASTLTTLAVFVPLVFVDGVAGALFSDQ 470 VV+EN++R + EA ++ GA+ + AVF+P+ F G GA++ Sbjct: 411 VVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQF 470 Query: 471 ALTVTFALLASLLVALTTIPMLASREGFKALPPLLEKTAKPKPETKLAKLKHYSATVFSF 530 ++T+ A+ S+LVAL P L + LL+ + E K Sbjct: 471 SITIVSAMALSVLVALILTPALCAT--------LLKPVSAEHHENK-------------- 508 Query: 531 PFVLLFNYLPSALLTLVLILGRTLSWLAGLVMRPISSAFNWGYHKLERFYHKLLAAALKF 590 G W FN + Y + L Sbjct: 509 --------------------GGFFGW------------FNTTFDHSVNHYTNSVGKILGS 536 Query: 591 RVLTLAIALMVTASAALLVPRLGMELIPPMNQGEFYVEVLLPPGTEVSETDRVLRTLALS 650 L I ++ A +L RL +P +QG F + LP G T +VL + Sbjct: 537 TGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY 596 Query: 651 IKDRTDVKHAYSQAGSGGLMTSDTSRGGENWGRLQVVLQDHNAFDAVADKLRATAMRIPE 710 + + + S G S ++ N G V L+ + + A R Sbjct: 597 YL-KNEKANVESVFTVNGFSFSGQAQ---NAGMAFVSLKPWEERNGDENSAEAVIHRAKM 652 Query: 711 LEAKVQHPELFSFKTPLEIEL-------------VGYDLAQLKQTADNLVDALSDS-DRF 756 K++ + F P +EL G L Q + L+ + Sbjct: 653 ELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 757 ADINTSLRDGQPELSIRFDHERLAALGMDAPTVANRIAQRIGGTIASQYTVRDRKIDILV 816 + + + + + D E+ ALG+ + I+ +GGT + + R R + V Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYV 772 Query: 817 RSELDERNQISDIDSMIINPNSSHPISLSAVADVSLKLGPSAINRISQQRVAIVSANLAY 876 +++ R D+D + + + + SA G + R + + A Sbjct: 773 QADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAP 832 Query: 877 GDLNDAVLNAREILANQTLPTSIQARFGGQNEEMEHSFKSLQIALVLAVFLVYLVMASQF 936 G + + E LA++ LP I + G + + S + ++ +V+L +A+ + Sbjct: 833 GTSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALY 891 Query: 937 ESLLHPLLILIAVPMAVGGSILGLFITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRINQL 996 ES P+ +++ VP+ + G +L + V +GL+ G+ NAI++V+ L Sbjct: 892 ESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDL 951 Query: 997 -RQDGEEKITAISNAAKSRLRPIIMTTMTTALGLSPMALGLGDGSEVRAPMAITVIFGLS 1055 ++G+ + A A + RLRPI+MT++ LG+ P+A+ G GS + + I V+ G+ Sbjct: 952 MEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMV 1011 Query: 1056 LSTLLTLVVIPVLYALFDRK 1075 +TLL + +PV + + R Sbjct: 1012 SATLLAIFFVPVFFVVIRRC 1031 Score = 109 bits (275), Expect = 2e-26 Identities = 96/522 (18%), Positives = 203/522 (38%), Gaps = 40/522 (7%) Query: 587 ALKFRVLTLAIALMVTASAALLVPRLGMELIPPMNQGEFYVEVLLPPGTEVSETDRVLRT 646 ++ + +A+++ + AL + +L + P + V P + D V + Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 647 LALSIKDRTDVKHAYSQAGSGGLMT-SDTSRGGENWGRLQVVLQDHNAFDAVADKLRATA 705 + ++ ++ + S + S G +T + T + G + + V +KL+ Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTD---PDIAQVQ------VQNKLQLAT 115 Query: 706 MRIPELEAKVQHPELFSFKTPLEIELV--------GYDLAQLKQTAD-NLVDALSDSDRF 756 +P+ +VQ + K+ +V G + N+ D LS + Sbjct: 116 PLLPQ---EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGV 172 Query: 757 ADINTSLRDGQPELSIRFDHERLAALGMDAPTVANRI----AQRIGGTIASQYTVRDRKI 812 D+ Q + I D + L + V N++ Q G + + +++ Sbjct: 173 GDVQLF--GAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQL 230 Query: 813 DILVRSELDERNQISDIDSMIINPNSS-HPISLSAVADVSLKLGPSAIN---RISQQRVA 868 + + ++ +N + + + NS + L VA V +LG N RI+ + A Sbjct: 231 NASIIAQTRFKN-PEEFGKVTLRVNSDGSVVRLKDVARV--ELGGENYNVIARINGKPAA 287 Query: 869 IVSANLAYGDLNDAVLNA-REILA--NQTLPTSIQA-RFGGQNEEMEHSFKSLQIALVLA 924 + LA G A + LA P ++ ++ S + L A Sbjct: 288 GLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEA 347 Query: 925 VFLVYLVMASQFESLLHPLLILIAVPMAVGGSILGLFITQTHLSVVVFIGLIMLAGIVVN 984 + LV+LVM +++ L+ IAVP+ + G+ L ++ + G+++ G++V+ Sbjct: 348 IMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVD 407 Query: 985 NAIVLVDRINQ-LRQDGEEKITAISNAAKSRLRPIIMTTMTTALGLSPMALGLGDGSEVR 1043 +AIV+V+ + + + +D A + ++ M + PMA G + Sbjct: 408 DAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIY 467 Query: 1044 APMAITVIFGLSLSTLLTLVVIPVLYALFDRKEFERKQSDKN 1085 +IT++ ++LS L+ L++ P L A + +K Sbjct: 468 RQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKG 509
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.0 bits (104), Expect = 6e-07 Identities = 40/192 (20%), Positives = 74/192 (38%), Gaps = 30/192 (15%) Query: 117 DLDRSQAEVEIIEQELNRLKK--ISNKEFFSADSMAKL--------EYNLQAAMAKRDLA 166 +L ++++E IE E+ K+ + F + + KL L+ A + Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQ 326 Query: 167 ALYVQESMIRSPIDGIVATRFVKS-GNMAKEFDELFYVVNQDELYGI-VHLPEQQLQHLR 224 A S+IR+P+ V V + G + + L +V +D+ + + + + + Sbjct: 327 A-----SVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFIN 381 Query: 225 LGQDAEIYANKHIQQTTH---ASVLRISP--IVDSQSGTF--------KVTLSVPNQNAT 271 +GQ+A I V I+ I D + G + LS N+N Sbjct: 382 VGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIP 441 Query: 272 LKAGMFTRVELK 283 L +GM E+K Sbjct: 442 LSSGMAVTAEIK 453 Score = 42.9 bits (101), Expect = 1e-06 Identities = 19/117 (16%), Positives = 49/117 (41%), Gaps = 12/117 (10%) Query: 80 KVVTRVAGLIRSIEVEEGDRVKKGQLLAVIDSKRQKFDLDRSQA------------EVEI 127 ++ +++ I V+EG+ V+KG +L + + + D ++Q+ ++ Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 128 IEQELNRLKKISNKEFFSADSMAKLEYNLQAAMAKRDLAALYVQESMIRSPIDGIVA 184 ELN+L ++ + ++++ E ++ K + Q+ +D A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRA 214
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 122 bits (306), Expect = 8e-36 Identities = 77/254 (30%), Positives = 125/254 (49%), Gaps = 13/254 (5%) Query: 7 GKVALITGAARGVGLATARLMAREGAQVVLTDINAEQGKEIANSIGNNSLFIEH---DVT 63 GK+A ITGAA+G+G A AR +A +GA + D N E+ +++ +S+ + E DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 64 KEADWSAVINHIEAKFGQLNILLNNAAILQLGDIKEETLAGWQRVHMVNSDSVFLRIHYA 123 A + IE + G ++IL+N A +L+ G I + W+ VNS VF Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 124 LPLMEKSGGGSIINMSSSSAVFGMPHFAAYGASKAAIRGLSQSVAVYCSQTKNNVRCNTL 183 M GSI+ + S+ A AAY +SKAA ++ + + ++ N+RCN + Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY--NIRCNIV 185 Query: 184 HPDSIMTPMVMEI-SAQAGDRSLADPDRAK-------AYVCRPEDVANSVLFLASDESKH 235 P S T M + + + G + + +P D+A++VLFL S ++ H Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 236 INGAAIALDGGATV 249 I + +DGGAT+ Sbjct: 246 ITMHNLCVDGGATL 259
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 430 bits (1108), Expect = e-136 Identities = 204/1054 (19%), Positives = 420/1054 (39%), Gaps = 62/1054 (5%) Query: 12 FARNSVAANLLMIIILLGGLLTANTIRKQFFPAVEINWLEFNAVYPGAAPQEVEEGITIK 71 F R + A +L II+++ G L + +P + + +A YPGA Q V++ +T Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 72 IEEALESVQGLKRVITYSNRNVSSG-YFRVEDSYDPQVVLEEVKSEIDSI-SSFPDGMER 129 IE+ + + L + + S+ S + DP + +V++++ P +++ Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 130 PKVERIKLRQE-VMYMSLY---GDLSQRQLKDLGEK-IHDELLQLPLVNITDFYGGLGYE 184 + K +M +Q + D + D L +L V +G Y Sbjct: 125 QGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-QYA 183 Query: 185 IAIEVSKDRLREFGLSFNDVAEAVRGYSRNMSAGQIRAE------NGYINLRVQNQAYVG 238 + I + D L ++ L+ DV ++ + ++AGQ+ ++ Q + Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNP 243 Query: 239 YEFESLPLITLEDGTTLLLGDVATVVDGFEQGIQYSKFNGMNSVTFFIGAANDQSLTDVA 298 EF + L DG+ + L DVA V G E ++ NG + I A + D A Sbjct: 244 EEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTA 303 Query: 299 DVVKGYIAEKQKVLPQGVKLEPWVDMTYYLEGRLNLMLDSMKSGAVLVFILLALFLR-VR 357 +K +AE Q PQG+K+ D T +++ ++ ++ ++ +LVF+++ LFL+ +R Sbjct: 304 KAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMR 363 Query: 358 LAFWVMMGLPVCFLGTLLFMPMGMIDVTINVISLFAFILVLGIVVDDAIVMGESAH-AEC 416 + +PV LGT + +IN +++F +L +G++VDDAIV+ E+ Sbjct: 364 ATLIPTIAVPVVLLGTFAILA--AFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 417 EEKGQTLDNVIRGVKRVAMPATFGVLTTIAAFLPITLDDGPSSAFGQAIGFVVILCLIFS 476 E+K + + + ++ + A F+P+ G + A + ++ + S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 477 LIESKLILPAHLARMKQKTVVKPGSKNPLDWLRNGVNFLQGKVDAGLKILIHSYYRPTLE 536 ++ + ++ PA A + +KP S + + D + +S + Sbjct: 482 VLVALILTPALCATL-----LKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGK---- 532 Query: 537 LAVKYRYTVIMIFISMILVCAGLYSGGLVRFIGQPKIPHDF-PRI---TFEMNIDASENA 592 + ++I+ ++ L+ ++P F P F I A Sbjct: 533 -ILGSTGRYLLIYALIVAGMVVLF----------LRLPSSFLPEEDQGVFLTMIQLPAGA 581 Query: 593 TLSAALSIEEALRRVDNQLEEQYGQKMISDLQVELRGRTS----AQVMTKLVDPEIRPID 648 T + + + + E+ + + + G+ A V K + + Sbjct: 582 TQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDEN 641 Query: 649 TFAVAELWRQNMPL--IPGMKSFTIQDNLFGGGRDDGDISFRLE---GKDDEQLIAAAKE 703 + A A + R M L I F L G + L A + Sbjct: 642 S-AEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQ 700 Query: 704 LKAKLNTLKG-VGDVNDSRQSSAKEIQFELK-PLAHSLGLTLADIARQVGNSFYGLEAQR 761 L + V + + + E+ A +LG++L+DI + + + G Sbjct: 701 LLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVND 760 Query: 762 ILRNGEEIKVMLRYPEEQRNSIAQVSDVMIKTPQGAEIPLSEVAAIVVTDGVNSIRRENG 821 + G K+ ++ + R V + +++ G +P S G + R NG Sbjct: 761 FIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNG 820 Query: 822 NRTINVWGSVDADQAEPFKLAKDIRDNFLPELLAKYPR-VKSEVSGNIQEQLDSADTQLR 880 ++ + G + +A + L +K P + + +G ++ S + Sbjct: 821 LPSMEIQGEAAPGTSSGDAMAL------MENLASKLPAGIGYDWTGMSYQERLSGNQAPA 874 Query: 881 DFLISMLVIYSLLAVPLKSYSQPIMIMSVIPFGVIGSVLGHMLLGLDLSALSVFGIIAAA 940 IS +V++ LA +S+S P+ +M V+P G++G +L L + G++ Sbjct: 875 LVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTI 934 Query: 941 GVVVNDSLVMVDYINKSRE-SGVAMKLSVLEAGCRRFRAILLTSLTTFIGLVPIMTETSM 999 G+ +++++V++ E G + + L A R R IL+TSL +G++P+ Sbjct: 935 GLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGA 994 Query: 1000 QAQMVIPMAVSLAFGVLFATVVTLVLIPCLYVMI 1033 + + + + G++ AT++ + +P +V+I Sbjct: 995 GSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.0 bits (96), Expect = 7e-06 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 26/154 (16%) Query: 52 PMSFAVSSYGVVNAKYETELVSQLNGEIVFLSEKFVR-GGFVKKGDILAKIDPSDYESAL 110 + ++ G + ++ + + IV E V+ G V+KGD+L K+ E+ Sbjct: 79 QVEIVATANGKLTHSGRSKEIKPIENSIV--KEIIVKEGESVRKGDVLLKLTALGAEADT 136 Query: 111 IDAQANMASARA--------------------TLVQEKAYGKVAEEEWKRIKNGVPTELS 150 + Q+++ AR L E + V+EEE R+ + + + S Sbjct: 137 LKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFS 196 Query: 151 LRKPQLAQ---EIAKLNSSEAGLKRAKRNLERTL 181 + Q Q + K + + E Sbjct: 197 TWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Score = 40.6 bits (95), Expect = 9e-06 Identities = 20/124 (16%), Positives = 49/124 (39%), Gaps = 7/124 (5%) Query: 105 DYESALIDAQANMASARATLVQEKAYGKVAEEEWKRIKNGVPTELSLRKPQLAQEIAKLN 164 + E+ ++A + ++ L Q ++ A+EE++ + E+ +L Q + Sbjct: 256 EQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL---DKLRQTTDNIG 312 Query: 165 SSEAGLKRAKRNLERTLIKAPYDALIEARNI-GLGSYVSMGTPLGKVL---STAEAEIRL 220 L + + + ++I+AP ++ + G V+ L ++ T E + Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALV 372 Query: 221 PIAD 224 D Sbjct: 373 QNKD 376
>SECA#SecA protein signature. Length = 901 Score = 52.6 bits (126), Expect = 2e-11 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 11/109 (10%) Query: 9 GRKTPKPKHESYGYNTKREIKVGTEEN------PLQLLVQTAEREAEVLQLLTDNELVGL 62 +K PK +++ ++ + + +Q+ + E E + + L + Sbjct: 795 AQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQQRRMEAERLAQM 854 Query: 63 ITVDPNQEENILLLTGLLNKPQTTRFEKSPNRNDPCVCGSGKKYKKCCG 111 + +++ E+ RNDPC CGSGKKYK+C G Sbjct: 855 QQLSHQDDDS-----AAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHG 898
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.035 Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 16/179 (8%) Query: 165 EEAKRNSVGLSISAQGNYELVALNGEEPHTEESYVALSAQEQERMQNAISALEAQLRGIV 224 E +K+ S + + Q E A N E +S V + Q E Q+ E Q Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 225 RQITVWEEEYSEKQQKHDEQVAEEVLTHALASLKQQYKEQTNVKSYIKAMHKDILDNLDI 284 TV +E EK + E+ E + S KQ+ E ++ + ++ + Sbjct: 1102 ETATVEKE---EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 285 FLEESEEQAALAYASMSKKMPR-------------RYQINVLVSQESQLQPIIVEETPN 330 + + A + N + + QP + E+ N Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 28.7 bits (64), Expect = 0.039 Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 16/181 (8%) Query: 120 QSKVNAFNMQIDAIDKQIELNNVAAEKYIQMERIATGVTRIQKENNKLREQQQQLAMQRD 179 K+N F+ D I+ + N++ I +I TGV++ R + + + Sbjct: 168 SPKLNPFDFSYDMIENFTKENSLQLNDNI-FSKIFTGVSKTLSSEICFRLKNNSIDLSLS 226 Query: 180 SVPVVSQGSIVGLIESLALSLNIKAETAQLGLVVFLSILLDFFAAF----FVGLIGEENR 235 ++ + + E + T V F + L + + Sbjct: 227 NLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLEN 286 Query: 236 F------RQRFKQQSQQLEPITLDAYRRLHNDDSDFIPIFEPKQLPEAEPKPLYERVLDA 289 F R K +S L+ I ++ R D L + E K +++ + Sbjct: 287 FYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILN-----NTLKKCEDKDIFKLYGEL 341 Query: 290 L 290 L Sbjct: 342 L 342
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 93.8 bits (233), Expect = 1e-22 Identities = 76/390 (19%), Positives = 156/390 (40%), Gaps = 16/390 (4%) Query: 38 LDMTIANVALPHMMGALGVTSDQVTWVLTSYSMAEAIFIPLASFLALKFGIRNLLLISVS 97 L+ + NV+LP + WV T++ + +I + L+ + GI+ LLL + Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 98 GFIVSSALCGQADTITEMVTF-RVMQGAFGASVIPLSQSIMVQIYPANQRGKAMALFSVG 156 S + + ++ R +QGA A+ L ++ + P RGKA L Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 157 VLLGPILGPTLGGIITENMDWRWIFYVNLPVGAICLTLIYTFVKLSGKGKPKIDWPIVIA 216 V +G +GP +GG+I + W ++ + + L+ +K + K D +I Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMK-LLKKEVRIKGHFDIKGIIL 206 Query: 217 MTIGIGLLQMVLDRGNQESWFESNTILFSTIISAIAIIFFVARSFTTKSEIAPVWLLRDR 276 M++GI + S +I F I+S ++ + FV L ++ Sbjct: 207 MSVGIVFFMLFTT---------SYSISF-LIVSVLSFLIFVKHIRKVTDPFVDPGLGKNI 256 Query: 277 NLAMSCLVMAGFSMG-MFGITQLQPMMLEQLLNY-PVETTGFAMAPRGLASAFVLLMMAR 334 M ++ G G + G + P M++ + E + P ++ + Sbjct: 257 PF-MIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGI 315 Query: 335 YMDRIDARLLIVIGLSLNALGTYLMTQYSLEINIYWILLPSIIQGAGMGLVFAPLSQLAY 394 +DR ++ IG++ ++ +L + LE +++ + + G+ +S + Sbjct: 316 LVDRRGPLYVLNIGVTFLSVS-FLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVS 374 Query: 395 ATLAPKDTIGGAVVFNLCRTIGGSFGISIV 424 ++L ++ G + N + GI+IV Sbjct: 375 SSLKQQEAGAGMSLLNFTSFLSEGTGIAIV 404
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 69.5 bits (170), Expect = 3e-15 Identities = 47/290 (16%), Positives = 92/290 (31%), Gaps = 41/290 (14%) Query: 80 QEVSQGDLLVQIDPAPFQAQLDEARAAYEVAIQNNAASDDAILAASANVRSAVAQLTDAQ 139 +EV + L++ + +Q Q + + I R ++L D Sbjct: 182 EEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD-- 239 Query: 140 ATYQRIKQLVAKQLLPAQQLDDARAKLSSAEENVIAARATMSQLIK------------TQ 187 L+ KQ + + + K A + ++ + Q+ TQ Sbjct: 240 -----FSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQ 294 Query: 188 GAQGNAAPEVKKAAAALSQ-------ASLSLSYTNIFAPKSGTLGKLTAHA-GSVVSVGQ 239 + ++++ + + I AP S + +L H G VV+ + Sbjct: 295 LFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE 354 Query: 240 ALVPLV-EANTYWVQANFKETQLELITKGMQATITLDLYPSVDYH---GTIEAISPASGS 295 L+ +V E +T V A + + I G A I ++ +P Y G ++ I+ + Sbjct: 355 TLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA-- 412 Query: 296 SFSLLPPENATGNWVKVPQRFPILIRLANESEHPDTPLRVGASANVTIDT 345 + G V + PL G + I T Sbjct: 413 -----IEDQRLGLVFNVIISIEENCLSTGN---KNIPLSSGMAVTAEIKT 454 Score = 43.7 bits (103), Expect = 7e-07 Identities = 16/116 (13%), Positives = 41/116 (35%) Query: 63 IAPQVHGKVISVNASDYQEVSQGDLLVQIDPAPFQAQLDEARAAYEVAIQNNAASDDAIL 122 I P + V + + + V +GD+L+++ +A + +++ A Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 123 AASANVRSAVAQLTDAQATYQRIKQLVAKQLLPAQQLDDARAKLSSAEENVIAARA 178 + N + + ++++ L +Q + + E N+ RA Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRA 214
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 3e-06 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 4/112 (3%) Query: 102 VNRLSANVESQQSALEKAQRDVERLKPLYEQDAASQLDFDNALSVLSQAKSSVAASKAEL 161 + +S LE+ + ++ K Y+ +QL + L L Q ++ EL Sbjct: 261 YVEAVNELRVYKSQLEQIESEILSAKEEYQL--VTQLFKNEILDKLRQTTDNIGLLTLEL 318 Query: 162 EEARLELSYTEIQSPISGLVSRSEV-DIGALVGSSGQSLLTRVKQVDPIYVT 212 + + I++P+S V + +V G +V + ++L+ V + D + VT Sbjct: 319 AKNEERQQASVIRAPVSVKVQQLKVHTEGGVVT-TAETLMVIVPEDDTLEVT 369
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 941 bits (2434), Expect = 0.0 Identities = 422/1028 (41%), Positives = 631/1028 (61%), Gaps = 9/1028 (0%) Query: 1 MAQYFVNRPVFASVISIVIVLLGLIAMFQLPIDQYPYITPPQVKISASYPGATSTTAAES 60 MA +F+ RP+FA V++I++++ G +A+ QLP+ QYP I PP V +SA+YPGA + T ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VATPLEQELNGLPNMIYMSSKSTNSGSTNITITFDVGTNPDLAAVDAQNSTQQATGSLPI 120 V +EQ +NG+ N++YMSS S ++GS IT+TF GT+PD+A V QN Q AT LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 DVQTEGVSVSKEASVELLKLALTSEDERYDEIYLSNYATINIQSALKRIPGVGRVRNTGA 180 +VQ +G+SV K +S L+ S++ + +S+Y N++ L R+ GVG V+ GA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 RSYSMRVWLNPDTMAGYGLTTSDVIDAIKAQNKESPAGSIGSQPNADTLSMTLPITAAGR 240 + Y+MR+WL+ D + Y LT DVI+ +K QN + AG +G P + I A R Sbjct: 181 Q-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 241 MSSVPQFNEIIVRASADGSIIRLRDIANIELGSSSYTLQSQLNGNNATILQVYLLPGANA 300 + +F ++ +R ++DGS++RL+D+A +ELG +Y + +++NG A L + L GANA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 301 LEVTKKVKSEMAKLAQKFPQGMNWEVFFDASVFIENSIDEVVKTLVEALILVILVVFMFL 360 L+ K +K+++A+L FPQGM +D + F++ SI EVVKTL EA++LV LV+++FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 361 QNIRATLIPAIAVPVSLIGTLAAMLAFGFTINTVSLLALVLAIGIVVDDAIVVVENVERL 420 QN+RATLIP IAVPV L+GT A + AFG++INT+++ +VLAIG++VDDAIVVVENVER+ Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 421 MDEKGLSSSQATKVAMKELSGALIATSLVLAAVFVPVSFLSGITGIMYREFAVAITVAVL 480 M E L +AT+ +M ++ GAL+ ++VL+AVF+P++F G TG +YR+F++ I A+ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 481 ISTLVALTLSPALCALLLRPG----DKATSGFFKWMNDRLDTATTKYVGLVVLTNKHAKR 536 +S LVAL L+PALCA LL+P + GFF W N D + Y V R Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 537 SYLLFALMVGGVYLTMSSLPSSFMPDEDQGRFFIDVSLPNGATVNRTQDVLKKAEATVLA 596 L++AL+V G+ + LPSSF+P+EDQG F + LP GAT RTQ VL + L Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 597 HPAV-AYSFTLAGENRRSGSNQANGQFEIILKPWSDRVDNDATVQKVMNEIKQSLHDVLE 655 + S SG Q G + LKPW +R ++ + + V++ K L + + Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 656 AEFKIYLPSAVPGLGNGSGVEMELQDTSGSNFKGLMETADELVEALKLQP-EIATAGLSL 714 + A+ LG +G + EL D +G L + ++L+ P + + + Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 715 QTAIPQLHLNVDEAKAMAIGVKVSDIYGTIKTFTDSSTVNDFNLFGRVYRVKVQAEEQYR 774 Q L VD+ KA A+GV +SDI TI T + VNDF GRV ++ VQA+ ++R Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 775 QFPDQIEDYHVRSSSGAMVPIGVLATSDYSVGPAALTHYNMFTSASINASPAPGYASGDV 834 P+ ++ +VRS++G MVP TS + G L YN S I APG +SGD Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 835 IRAIERVAKPMLPDEFSYEWTGITYQEVQSANQTAIAVTLAMVFVFLFLAALYESWTLPI 894 + +E +A LP Y+WTG++YQE S NQ V ++ V VFL LAALYESW++P+ Sbjct: 840 MALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 895 AVLLIAPIAMLGASVGTLVSGMESNLFFQVAFIALIGMAAKNSILIVEFANQLH-KEGKS 953 +V+L+ P+ ++G + + +++++F V + IG++AKN+ILIVEFA L KEGK Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 954 RLDSAIEAANMRFRPILMTSLAFILGVLPLVFSVGPGAVSRQSISIPILCGMIFATTIGI 1013 +++ + A MR RPILMTSLAFILGVLPL S G G+ ++ ++ I ++ GM+ AT + I Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1014 IMVPLFFV 1021 VP+FFV Sbjct: 1019 FFVPVFFV 1026 Score = 104 bits (262), Expect = 7e-25 Identities = 78/511 (15%), Positives = 180/511 (35%), Gaps = 29/511 (5%) Query: 5 FVNRPVFASVISIVIVLLGLIAMFQLPIDQYPYITPPQVKISASYPGATSTTAAESVATP 64 + +I +IV ++ +LP P P + + V Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 65 LEQEL-----NGLPNMIYMSSKSTNSGSTNITITF------DVGTNPDLAAVDAQNSTQQ 113 + + ++ ++ S + + N + F + + +A + + Sbjct: 593 VTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKM 652 Query: 114 ATGSLPIDVQTEGVSVSKEASVELL---KLALTSEDERYDEI-YLSNYATINIQSALKRI 169 G + + + A VEL D+ L+ + A + Sbjct: 653 ELGKIRDGF---VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHP 709 Query: 170 PGVGRVRNTG-ARSYSMRVWLNPDTMAGYGLTTSDVIDAIKAQNKESPAGSIGSQPNADT 228 + VR G + ++ ++ + G++ SD+ I + + Sbjct: 710 ASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKK 769 Query: 229 LSMTLPITAAGRMSSVPQFNEIIVRASADGSIIRLRDIANIELGSSSYTLQSQLNGNNAT 288 L + +++ VR SA+G ++ S L + NG + Sbjct: 770 LYVQADAKFR---MLPEDVDKLYVR-SANGEMVPFSAFTTSHWVYGSPRL-ERYNGLPSM 824 Query: 289 ILQVYLLPGANALEVTKKVKSEMAKLAQKFPQGMNWEVFFDASVFIENSIDEVVKTLVEA 348 +Q PG + + M LA K P G+ ++ + S ++ + + Sbjct: 825 EIQGEAAPGT----SSGDAMALMENLASKLPAGIGYDWTGMSYQERL-SGNQAPALVAIS 879 Query: 349 LILVILVVFMFLQNIRATLIPAIAVPVSLIGTLAAMLAFGFTINTVSLLALVLAIGIVVD 408 ++V L + ++ + + VP+ ++G L A F + ++ L+ IG+ Sbjct: 880 FVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAK 939 Query: 409 DAIVVVENVERLMDEKGLSSSQATKVAMKELSGALIATSLVLAAVFVPVSFLSGITGIMY 468 +AI++VE + LM+++G +AT +A++ ++ TSL +P++ +G Sbjct: 940 NAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999 Query: 469 REFAVAITVAVLISTLVALTLSPALCALLLR 499 + + ++ +TL+A+ P ++ R Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030 Score = 68.7 bits (168), Expect = 1e-13 Identities = 82/506 (16%), Positives = 179/506 (35%), Gaps = 44/506 (8%) Query: 538 YLLFALMVGGVYLTMSSLPSSFMPDEDQGRFFIDVSLPNGATVNRTQD-VLKKAEATVLA 596 ++L +++ L + LP + P + + P GA QD V + E + Sbjct: 13 WVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQTVQDTVTQVIEQNMNG 71 Query: 597 HPAVAYSFTLAGENRRSGSNQANGQFEIILKPWSDRVDNDATVQKVMNEIKQSLHDVLEA 656 + Y ++ + +GS F+ D D +V N+++ + Sbjct: 72 IDNLMY---MSSTSDSAGSVTITLTFQ-------SGTDPDIAQVQVQNKLQLATPL---- 117 Query: 657 EFKIYLPSAVPGLG-----NGSGVEMELQDTSGSNFKGLMETADELVEALKLQPEIAT-- 709 LP V G + S M S + + +D + +K ++ Sbjct: 118 -----LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVK--DTLSRLN 170 Query: 710 --AGLSLQTAIPQLHLNVDEAKAMAIGVKVSDIYGTIKTFTDS----STVNDFNLFGRVY 763 + L A + + +D + D+ +K D L G+ Sbjct: 171 GVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQL 230 Query: 764 RVKVQAEEQYRQFPDQIEDYHVRSS-SGAMVPIGVLAT-SDYSVGPAALTHYNMFTSASI 821 + A+ ++ + P++ +R + G++V + +A + N +A + Sbjct: 231 NASIIAQTRF-KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGL 289 Query: 822 NASPAPGYASGDVIRAI-ERVA--KPMLPDEFSYEWTGITYQEVQSANQTAI-AVTLAMV 877 A G + D +AI ++A +P P + T VQ + + + A++ Sbjct: 290 GIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIM 349 Query: 878 FVFLFLAALYESWTLPIAVLLIAPIAMLGASVGTLVSGMESNLFFQVAFIALIGMAAKNS 937 VFL + ++ + + P+ +LG G N + IG+ ++ Sbjct: 350 LVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDA 409 Query: 938 ILIVEFANQLHKEGKSR-LDSAIEAANMRFRPILMTSLAFILGVLPLVFSVGPGAVSRQS 996 I++VE ++ E K ++ ++ + ++ ++ +P+ F G + Sbjct: 410 IVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 997 ISIPILCGMIFATTIGIIMVPLFFVT 1022 SI I+ M + + +I+ P T Sbjct: 470 FSITIVSAMALSVLVALILTPALCAT 495
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 61.4 bits (149), Expect = 2e-12 Identities = 59/343 (17%), Positives = 113/343 (32%), Gaps = 15/343 (4%) Query: 49 IALQNLLFGVFQPFVGMAADRFGSKRVIMLGAIAYGLGLLLTSISTSTEMFYVSISMLIG 108 +AL L+ P +G +DRFG + V+++ + + + + + Y I ++ Sbjct: 49 LALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLY--IGRIVA 106 Query: 109 LGLSATSYVVVLGAVAKVVPAEHTAKAFGLTTAAGSFGMFAVIPGAQSLLTEFDWQTALQ 168 G++ + V +A + + A+ FG +A FGM A P L+ F Sbjct: 107 -GITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAG-PVLGGLMGGFSPHAPFF 164 Query: 169 VFALLCCFMFAFASF-MKTVKPSETSSEQLDDQTLTEALKQACTNRNYWLIHLGFFVCGF 227 A L F F + E + + + + A + FF+ Sbjct: 165 AAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQL 224 Query: 228 HVMFIATHLPSYLSDK-HLDSSTAALALAYVGIFNIFGSYFWGVMGDKFNKRYVMSALYL 286 A + D+ H D++T ++LA GI + ++ R Sbjct: 225 VGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSL---AQAMITGPVAARL--GERRA 279 Query: 287 IRTVVIA---AFVTLPVTNHTAAIFGAAIGFCWLG-TVPLTSGLVRQIFGARYLSTLYGL 342 + +IA ++ L F + G +P ++ + L G Sbjct: 280 LMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGS 339 Query: 343 VFFTHQIGSFLGAWVGGRIYDYYGSYEPIWWSTVVLAFVAALL 385 + + S +G + IY + W A L Sbjct: 340 LAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCL 382 Score = 35.6 bits (82), Expect = 3e-04 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 4/102 (3%) Query: 46 SFAIALQNLLFGVFQPFV-GMAADRFGSKRVIMLGAIAYGLGLLLTSISTSTEMFYVSIS 104 ++A +L + Q + G A R G +R +MLG IA G G +L + +T M + + Sbjct: 249 GISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMV 308 Query: 105 MLIGLGLSATSYVVVLGAVAKVVPAEHTAKAFGLTTAAGSFG 146 +L G+ + +++ V E + G A S Sbjct: 309 LLASGGIGMPALQ---AMLSRQVDEERQGQLQGSLAALTSLT 347
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 72.3 bits (177), Expect = 6e-17 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 2/95 (2%) Query: 126 ELALGLNVQFKTGSSVIEPHFQQQLNDIAYAMS--LSPELTLDLTGYADRRGDSDYNQAL 183 L +V F + ++P Q L+ + +S + ++ + GY DR G YNQ L Sbjct: 214 HFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGL 273 Query: 184 SEQRVAEVKNYLTEQGVEEERLHNQAFGDSSPLMA 218 SE+R V +YL +G+ +++ + G+S+P+ Sbjct: 274 SERRAQSVVDYLISKGIPADKISARGMGESNPVTG 308
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.8 bits (163), Expect = 5e-15 Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 4/134 (2%) Query: 3 RIAIVEDEAAIRENYKEVLQQQGYCVQAYANRPEAMLAFNTRLPDLAIIDIGLENEIDGG 62 I + +D+AAIR + L + GY V+ +N DL + D+ + +E Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE--NA 62 Query: 63 FTLCQSLRAMSSTLPIIFLTARDSDFDTVCGLRLGADDYLSKDVSFPHLIA--RLAALFR 120 F L ++ LP++ ++A+++ + GA DYL K LI A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 121 RSDLKNVDSDNNQI 134 + ++ D+ Sbjct: 123 KRRPSKLEDDSQDG 136
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 43.7 bits (103), Expect = 5e-08 Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 4 MQRPTASKGFTLIELVIVIIVLGILAVIAAAKYVDLKRDAEIARVKGVAAAFEQSL 59 M+ +GFTL+E+++VI+++G+LA + + K A+ + A E +L Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENAL 56
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 47.4 bits (113), Expect = 6e-08 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 25/158 (15%) Query: 109 VRSPKSFLGATGLRESQIALFEDIVTLMMMHIKQQAESN--FSPAQKITHAVIGRPVNFQ 166 R+P + +++ IA F + M+ H +Q SN P+ ++ ++ PV Sbjct: 64 GRTPGNIAAIRPMKDGVIADFF-VTEKMLQHFIKQVHSNSFMRPSPRV---LVCVPVGAT 119 Query: 167 GIGGEQSNQQAEAILSLAASRAGFTEVDFLFEPLAAGMDYEASLDENVTVLVVDVGGGTT 226 + + AI +A AG EV + EP+AA + + E +VVD+GGGTT Sbjct: 120 QV-------ERRAIRE-SAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTT 171 Query: 227 DCSMVKMGPNHIDNRDRSADFLGHSGQRIGGNDLDIAL 264 + +++ + + S RIGG+ D A+ Sbjct: 172 EVAVISLN-----------GVVYSSSVRIGGDRFDEAI 198 Score = 34.3 bits (79), Expect = 8e-04 Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 18/116 (15%) Query: 340 YKLV---RSAEQSKIALSSDACVDTPLEY-IH-----AGL--HARVSEDDFESAITIPLS 388 Y + +AE+ K + S D E + G+ ++ ++ A+ PL+ Sbjct: 206 YGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLT 265 Query: 389 KVEALMREALEQ------AGVMPDRIYVTGGTARSPAIYKRISGLFPEIPIVVGDH 438 + + + ALEQ + + + +TGG A + + + IP+VV + Sbjct: 266 GIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLME-ETGIPVVVAED 320
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.013 Identities = 26/156 (16%), Positives = 62/156 (39%), Gaps = 18/156 (11%) Query: 42 EVRSTSAKVLAEKKEIIRR-IAKVQEQVQDWESKAELALSKDREDLAKAALVEKQKANDL 100 + A++ + +I+ R I + + + E L +L+++Q + Sbjct: 140 QSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Query: 101 AQ---------TLAAELVVVEEHILRLKDEVNLLQEKLADAKARQKTIIMRKQTASSRLE 151 Q AE + V I R ++ + + +L D + + + A ++ Sbjct: 200 NQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSS------LLHKQAIAKHA 253 Query: 152 VKKQLDSSKIDNAMSKFEQYERRVESLESQVDSYDL 187 V +Q +K A+++ Y+ ++E +ES++ S Sbjct: 254 VLEQ--ENKYVEAVNELRVYKSQLEQIESEILSAKE 287
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 349 bits (896), Expect = e-119 Identities = 118/363 (32%), Positives = 184/363 (50%), Gaps = 21/363 (5%) Query: 6 QQDNLIGQSNALLEVLEHISQVAPLSKPVLIIGERGTGKELIAERLHYLSKRWDQSFIKL 65 L+G+S A+ E+ ++++ ++I GE GTGKEL+A LH KR + F+ + Sbjct: 135 DGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194 Query: 66 NCSSLSENLLESELFGHDAGAFTGASKKHEGRFERADGGTLFLDELANTSGLIQEKLLRV 125 N +++ +L+ESELFGH+ GAFTGA + GRFE+A+GGTLFLDE+ + Q +LLRV Sbjct: 195 NMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRV 254 Query: 126 IEYGEFERVGGSKTVQTNVRLVCAANEDLPSLAEAGEFRPDLLDRLAFDVITLPPLRHRS 185 ++ GE+ VGG ++++VR+V A N+DL G FR DL RL + LPPLR R+ Sbjct: 255 LQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRA 314 Query: 186 EDIMPLAEYFAIGMARQLKLELFEGFSCNAIEQLMEYQWPGNIRELKNVVERSVYRNAET 245 EDI L +F ++ F A+E + + WPGN+REL+N+V R Sbjct: 315 EDIPDLVRHFVQQAEKEGLDVK--RFDQEALELMKAHPWPGNVRELENLVRRLTAL-YPQ 371 Query: 246 NTAIDQIIIDPFAS--PYRPTKRVKTKERQQTVSPEVNSAATNSSAEVSANPSADMSTNN 303 + +II + S P P ++ + ++S V A Sbjct: 372 DVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPP------ 425 Query: 304 SAAADAKVNFPIDFKTHCEQGEVRILKQALEAGQFNQKKTAELLGLSYHQLRGILKKYNL 363 + + E ++ AL A + NQ K A+LLGL+ + LR +++ + Sbjct: 426 ----------SGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475 Query: 364 LDK 366 Sbjct: 476 SVY 478
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.010 Identities = 9/16 (56%), Positives = 14/16 (87%) Query: 38 LVGESGSGRTLLARAI 53 + GESG+G+ L+ARA+ Sbjct: 165 ITGESGTGKELVARAL 180
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.006 Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 325 LTAYLQHFGDLQQCANVLFIHRNTLRYRLDKI 356 L A G+ + A++L ++RNTLR ++ ++ Sbjct: 442 LAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 44.1 bits (104), Expect = 3e-08 Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 4/58 (6%) Query: 4 ASTRRTGFTLIEMVVVIIVLGIIAVIALPKFVNF--HSDSKVATLDGIAAAMKSGLDL 59 A+ ++ GFTL+E++VVI+++G++A + +P + +D + A D A+++ LD+ Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSD--IVALENALDM 58
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 141 bits (358), Expect = 1e-41 Identities = 87/350 (24%), Positives = 142/350 (40%), Gaps = 50/350 (14%) Query: 4 MTKTLFCLLSPMFVYSSAAVAEGYYSDGDFYFGAKLGGALLDSQAKQEPEENKAVN-LSS 62 M KT + + + A VA+ D +Y GAKLG + N L + Sbjct: 1 MKKTAIAIAVALAGF--ATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGA 58 Query: 63 GLVFGYNLNRYLALESDLSYLGKGQDKQQSTLSADKHLFSIATYLS--TRYRLSDEASLY 120 G GY +N Y+ E +LG+ K A K + L+ Y ++D+ +Y Sbjct: 59 GAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYK---AQGVQLTAKLGYPITDDLDIY 115 Query: 121 FKLGPAWVNDD-------------ISISSGLGIKYRFSPRWELDTGYRWI-----KDTPS 162 +LG D +S G++Y +P Y+W T Sbjct: 116 TRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIG 175 Query: 163 TDDDLYEFTLGFNYKFGVVSHPSVRPAIDPMHKPLDKQQVLITPTINVQSVSIRGNSVFG 222 T D +LG +Y+FG + P+ P + + +++ + +F Sbjct: 176 TRPDNGMLSLGVSYRFG---------QGEAA--PVVAPAPAPAPEVQTKHFTLKSDVLFN 224 Query: 223 FDSSKLTDTS--ALDEVIK--SALASKNASISVTAYTDSLGAERYNLALAKRRAEATQAY 278 F+ + L ALD++ S L K+ S+ V YTD +G++ YN L++RRA++ Y Sbjct: 225 FNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDY 284 Query: 279 FITHGVAPSRIHIDWKGEENPVSSNMTAKGR---------ALNRRVEIEI 319 I+ G+ +I GE NPV+ N + A +RRVEIE+ Sbjct: 285 LISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.011 Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 2/22 (9%) Query: 314 LVADGQVVEKGQ--AQIDAPGA 333 +V +G+ V KG ++ A GA Sbjct: 111 IVKEGESVRKGDVLLKLTALGA 132
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 59.9 bits (145), Expect = 4e-11 Identities = 69/476 (14%), Positives = 138/476 (28%), Gaps = 92/476 (19%) Query: 285 RIEVYRDSHLIYSKNVDSGQQSIAFRDLPYGSY--TATVVVI-AAGREILKERQQIVN-- 339 ++ + ++ + IY+ V G +I D+ V + A G + V Sbjct: 310 QVTIKQNGYDIYNSTVPPGPFTI--NDIYAAGNSGDLQVTIKEADGST----QIFTVPYS 363 Query: 340 NSAFSLNKGEYDYSFSAGRFNDRYEDSYEGVVEQNRQRQLIKLQAKLGYRVNSDSLQADA 399 + +G YS +AG + + Q+ L + + Sbjct: 364 SVPLLQREGHTRYSITAGEYRSGNAQQEKPRF----------FQSTLLHGLP------AG 407 Query: 400 VNLSAQAIALDAYLEALPEQSKLQLDSNNFVEGKFSYQLT--------DSTMVGARLLSN 451 + D Y + N G S +T DS G + Sbjct: 408 WTIYGGTQLADRYRAFN-----FGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFL 462 Query: 452 SDSTLSELGIKTSFNDASTAQFKYASFSNGSQFMAADVSFYSIGVGYEKFDSADSDFGLD 511 + +L+E G T+ ++ + + N + + ++ Y+I + D Sbjct: 463 YNKSLNESG--TNIQLVGY-RYSTSGYFNFADTTYSRMNGYNI--ETQDGVIQVKPKFTD 517 Query: 512 NFMLSNTGYQRLNVNLSSDLWGGQGYLLYVNNKLDATNSPALFVDQSDYW-------SVS 564 + L+ +L + ++ L G L L YW Sbjct: 518 YYNLAYNKRGKLQLTVTQQL-GRTSTL-------------YLSGSHQTYWGTSNVDEQFQ 563 Query: 565 AGFSHSFIADSV-INFSATFQGGDSFGVEDDWYAGVLWSVPLSAGWSASSSVSVSRQGLD 623 AG + +F + +++S T + +V + S + Sbjct: 564 AGLNTAFEDINWTLSYSLTKNAWQK-----GRDQMLALNVNIPFSHWLRSDSKSQWRHA- 617 Query: 624 EFRNSVANDRQVTRNLSMNNELGISYNGTDVDRNMSSDLSSNISY-DNSYVASDTYAYIS 682 S + N M N G+ D N+S + + + + S YA ++ Sbjct: 618 ----SASYSMSHDLNGRMTNLAGVYG-TLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLN 672 Query: 683 SDGTH-----SVSSSFNSTQ--------VLSAKGEAYFTSEQSDSYIIVDAQNQGG 725 G + S S + Q VL+ +D+ ++V A Sbjct: 673 YRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKD 728
>PF04647#Accessory gene regulator B Length = 212 Score = 30.5 bits (69), Expect = 0.011 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 12/149 (8%) Query: 167 SDIYALFIILCIGGLIFITLYNGIIYVS---IRDKAFLYYA-CYVLCYLTGWALTFHLP- 221 ++ + IIL + +I + +S R + + Y C LT + L Sbjct: 34 GTVFQIIIILLVAFVIGLAKEVAFCLLSAAVYRRFSGGAHCEKYYRCTLTSLLVFNVLAY 93 Query: 222 -AHLFDFHNLELHHLFFIGLPIFNILFY------IHFLQLPELSPKLYRLSLGLLWLCII 274 AHL D +L L + +LF + + E L + +L + Sbjct: 94 IAHLIDPAYFQLLILIAFITSLLALLFLVPVDNPRNLISNTEQRKTLKLKTSMVLMVLFG 153 Query: 275 ALPTSMYLVSYTAIIASVLIMLWIGLAMF 303 + L ++ +A +L +LW + Sbjct: 154 GSIGAYRLYTHQIALAILLGVLWQTFTLT 182
>PF03627#PapG Length = 336 Score = 28.0 bits (62), Expect = 0.019 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 7/42 (16%) Query: 77 QAISSFCELNFGVTFPLFEKIEVNGANTAPLYAHLKQSAKGL 118 Q +S C++ + F L NT P Y+H K+ + GL Sbjct: 243 QTLSVSCDVPANIRFMLL-------RNTTPTYSHGKKFSVGL 277
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 171 bits (434), Expect = 4e-50 Identities = 47/279 (16%), Positives = 104/279 (37%), Gaps = 43/279 (15%) Query: 39 ESVLSQNHACSDTI-VIRSQA-LTEKQLSSACQLLIKQEASFHKLFGTLNKPVADDNNHK 96 E L + + D V+++ +TE+++ + +A F ++ + + Sbjct: 387 EKYLPKTYTFDDGKFVVKAGDKVTEEKIKRLYWASKEVKAQFMRVVQNDKALEEGNPDDI 446 Query: 97 MRANVYHSRQDYVDHVTNHFDVPSDNGGMYLEGLPWESDNQAEFVAYEKKGQ-----VWN 151 + +Y+S ++Y +DNGG+Y+E N F YE+ + + Sbjct: 447 LTVVIYNSPEEY-KLNRIINGFSTDNGGIYIE-------NIGTFFTYERTPEESIYTLEE 498 Query: 152 LA-HEYVHYLDGRFNLYGDFCLSLHDSHSGPEYCPKPAPLYPHTVWWSEGVAEYISLGDN 210 L HE+ HYL GR+ + G + W+ EG AE+ + Sbjct: 499 LFRHEFTHYLQGRYVVPGMWGQGEFYQEG-------------VLTWYEEGTAEFFAGSTR 545 Query: 211 NPKAIAL------IGGEPSYK--LSEIFNTSYEKNGGTDRVYRWGYLAVRFMIENHKDKV 262 + + + + L + + Y G+ Y +G+ +M N+ Sbjct: 546 TDGIKPRKSVTQGLAYDRNNRMSLYGVLHAKY----GSWDFYNYGFALSNYMYNNNMGMF 601 Query: 263 DTMLGFTRKGDYPRYQALLAGWGT--SMDAEFDTWLEQL 299 + M + + D Y+ +A + ++ ++ +++ L Sbjct: 602 NKMTNYIKNNDVSGYKDYIASMSSDYGLNDKYQDYMDSL 640 Score = 83.2 bits (205), Expect = 9e-20 Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 39/169 (23%) Query: 147 GQVWNLAHEYVHYLDGRFNLYGDFCLSLHDSHSGPEYCPKPAPLYPHTVWWSEGVAEYIS 206 + L +Y Y+D N + + L + + A+ I+ Sbjct: 624 SSDYGLNDKYQDYMDSLLNNIDNLDVPLVSD-----------------EYVNGHEAKDIN 666 Query: 207 LGDNNPKAIALIGGEPSYKLSEIFNTSYEKNGGTDRVYRWGYLAVRFMIENH-----KDK 261 N+ K ++ I S F T+Y+ R Y+ R E + K Sbjct: 667 EITNDIKEVSNIKDLSSNVEKSQFFTTYD--------MRGTYVGGRSQGEENDWKDMNSK 718 Query: 262 VDTMLGFTRKGDYPRYQALLAGW---------GTSMDAEFDTWLEQLKS 301 ++ +L K + Y+ + A + D F + Sbjct: 719 LNDILKELSKKSWNGYKTVTAYFVNHKVDGNGNYVYDVVFHGMNTDTNT 767
>PF06580#Sensor histidine kinase Length = 349 Score = 34.1 bits (78), Expect = 0.001 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 26/106 (24%) Query: 327 LISNAIRY----TEPGGKVEISWRKIAIGGLFSVKDNGEGIAPHHIGRLTERFYRVDSAR 382 L+ N I++ GGK+ + K V++ G + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306 Query: 383 SRQSGGTGLGLAITKH---ALHNHQSELNIASQLGKGSTFSFVIPA 425 TG GL + L+ ++++ ++ + GK + +IP Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM-VLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.8 bits (228), Expect = 1e-23 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 5/138 (3%) Query: 3 ARILIVEDELAIREMLTFVLEQHGYTTVAAEDYDSALDMLTEPYPDLVLLDWMFPGGSGI 62 A IL+ +D+ AIR +L L + GY + + + DLV+ D + P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVM-- 120 L R+++ +P+++++A+ ++ E GA D++ KPF EL+ I + Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 121 -RRSAPTCLEDPIDVQGL 137 +R +D D L Sbjct: 122 PKRRPSKLEDDSQDGMPL 139
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 65.6 bits (160), Expect = 3e-14 Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 17/225 (7%) Query: 13 AVATATMSSAYAADPLTVYGKLN--VTAQSNDVND-------ESTTTIQSNASRFGVKGA 63 A+ A + A AD +T+YG + V + ++ E+ T I S+ G KG Sbjct: 7 ALTLAALPVAAMAD-VTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQ 65 Query: 64 FELSNSLEAFYTVEYEVDTGDSSKDNFEARNQFVGLRGNFGAFSVGRNDTMLKAS---QG 120 +L N L+A + VE + + R F+GL+G FG VGR +++LK + Sbjct: 66 EDLGNGLKAIWQVEQKASIAGTDSGWGN-RQSFIGLKGGFGKLRVGRLNSVLKDTGDINP 124 Query: 121 KVDQFNDLSGDLKNLFKGENRIEQTATYITPSFGGFKVGVTYAAEGASSQYTQDGFSVAA 180 + + L + + + E R+ + Y +P F G V YA + ++ + + Sbjct: 125 WDSKSDYLGVN--KIAEPEARL-ISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGF 181 Query: 181 MYGDAKLKKSPIYASVAYDSDVKGYEVARATVQGKIAGLKLGAMY 225 Y + A + + + + + ++G A+Y Sbjct: 182 NYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDNDALY 226
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 76.2 bits (187), Expect = 4e-18 Identities = 83/305 (27%), Positives = 124/305 (40%), Gaps = 32/305 (10%) Query: 4 VKTFALAATAIAATMSAPTFAADRSDLRSGDYSWMQFNAMYAVNELPRSDADDGGHDYLE 63 +K LAA A+ A + A +D W + + R YLE Sbjct: 1 MKKTLLAAGAVVALSTTFAAGAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLE 60 Query: 64 MEFGGRAGIVDLYGYVDVFNLANSSSGDKG--AGKSKMFMKFAPRFSIDAMTGWDLSAGP 121 E + D YGY+D +S KG S +FM+ PRFSID +T DLS GP Sbjct: 61 YEAFAKKDWFDFYGYIDAPVFFGGNSTAKGIWNKGSPLFMEIEPRFSIDKLTNTDLSFGP 120 Query: 122 IQEVYFSTLFNWGGGAISGVDADGNEHGGDVNMSFWGLGADVMVPWLGKTGMNLYATYD- 180 +E YF+ + + G + + + GLG D+ +N+YA Y Sbjct: 121 FKEWYFANNYIYDM---------GRNDSQEQSTWYMGLGTDIDTGLPMSLSLNVYAKYQW 171 Query: 181 -----MNAKDWNGYQFSMNWFKPVMNFDNGSFVSFQGYVDYQFGADAVDDMYVPTT---- 231 N +W+GY+F + +F P+ + GS +S+ G+ ++ +G+D DD + Sbjct: 172 QNYGASNENEWDGYRFKVKYFVPLTDLWGGS-LSYIGFTNFDWGSDLGDDNFYDLNGKHA 230 Query: 232 -------SSGGAAYFGLHWHSDNYALGY--GLKAYQDVYLVKDDGGIVGLESTGFAHYFT 282 SS A HWH A + G + D L DG + STG+ YF Sbjct: 231 RTSNSIASSHILALNYAHWHYSIVARYFHNGGQWADDAKLNFGDGPF-SVRSTGWGGYFV 289 Query: 283 ATYKF 287 Y F Sbjct: 290 VGYNF 294
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 122 bits (308), Expect = 8e-40 Identities = 67/112 (59%), Positives = 83/112 (74%), Gaps = 3/112 (2%) Query: 1 MYEVLMVVYLLVSIGLVGLILIQQGKGADMGASFGAGASGTLFGSSGSGNFLTRSTAILA 60 MYE L+VV+L+V+IGLVGLI++QQGKGADMGASFGAGAS TLFGSSGSGNF+TR TA+LA Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 61 VAFFALSLTIGNLSANHTKAEGAWDDLGSDAAQVVEQVQQEA-EKSEDKIPD 111 FF +SL +GN+++N T W++L A EQ Q A K IP+ Sbjct: 61 TLFFIISLVLGNINSNKTNKGSEWENL--SAPAKTEQTQPAAPAKPTSDIPN 110
>adhesinb#Adhesin B signature. Length = 310 Score = 32.5 bits (74), Expect = 0.001 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 16/95 (16%) Query: 142 REARRTFEVIAEELDVVIEKNGTMAFDNAIIAY----EPLWAVGTGKSATPEQAQEVHAF 197 +EA+ F I E +++ G F AY +W + T + TP+Q + + Sbjct: 186 KEAKEKFNNIPGEKKMIVTSEG--CFKYFSKAYNVPSAYIWEINTEEEGTPDQIKTLVEK 243 Query: 198 IRKRLSEVSPFIGENIRILYGGSVTPSNAADLFAQ 232 +RK + L+ S ++ Sbjct: 244 LRKT----------KVPSLFVESSVDDRPMKTVSK 268
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 5e-04 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 18/82 (21%) Query: 193 VLLVGPPGTGKTLLAKAI---AGEAKVPFFT-----ISGSDFVEMFVGV------GASRV 238 +++ G GTGK L+A+A+ PF I G GA Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR 222 Query: 239 RD-MFEQAKKSAPCIIFIDEID 259 FEQA+ +F+DEI Sbjct: 223 STGRFEQAEGGT---LFLDEIG 241
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 234 bits (598), Expect = 8e-78 Identities = 88/302 (29%), Positives = 150/302 (49%), Gaps = 18/302 (5%) Query: 14 KARYLSSVFSLLIMLASIGIILTNGFNLGLDFTGGVVTEVKLDPNIKAAQISELLGKDSQ 73 + ++ + ++++M+AS+ + L G N G+DF GG + I L Sbjct: 18 RWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAIDVGVYRAALEPLEL 77 Query: 74 QEVSV------------------ISAGEPGRWVLRYAKVDDVSGADIRTVLAPLTNQVEV 115 +V + I E G+ + T L + +++ Sbjct: 78 GDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALTAVDPALKI 137 Query: 116 LNSSIVGPQIGQELAEQGGLALLAAMLCILGYLSFRFEWRLASGALLALFHDVIFVLAFF 175 + VGP++ EL +LLAA + I+ Y+ RFEW+ A GA++AL HDV+ + F Sbjct: 138 TSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLTVGLF 197 Query: 176 SLTQMEFNLTILAAVLAILGYSLNDSIVIADRVREVLIAKPKAAIDEICSSAVQATFSRT 235 ++ Q++F+LT +AA+L I GYS+ND++V+ DR+RE LI + ++ + +V T SRT Sbjct: 198 AVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNETLSRT 257 Query: 236 MVTSGTTLFTVAALWIMGGAPLQGFSIAMFLGILIGTISSVSVGTCLPEYLKVSAEHYKV 295 ++T TTL + + I GG ++GF AM G+ GT SSV V + ++ + K Sbjct: 258 VMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIGLDRNKEKK 317 Query: 296 EP 297 +P Sbjct: 318 DP 319
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 82.6 bits (204), Expect = 2e-19 Identities = 35/174 (20%), Positives = 81/174 (46%), Gaps = 4/174 (2%) Query: 422 VTIVEERTIGPSLGEENITNGFSALALGMGVTLLFMGLWYR-RLGWIANVALVANMILIF 480 + I ++GP + E + +L V + ++ + + + A VALV +++L Sbjct: 135 LKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLTV 194 Query: 481 GLMALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLK--EGRSFAHAIDRGFDSA 538 GL A++ L +A L+ G +++ V++F+R+++ L + ++ + Sbjct: 195 GLFAVL-QLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNET 253 Query: 539 FSTIVDANFTTMITAVVLYAIGNGPIQGFALTLGLGLLTSMFTGIFASRALVNW 592 S V TT++ V + G I+GF + G+ T ++ ++ ++ +V + Sbjct: 254 LSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLF 307
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 27.6 bits (61), Expect = 0.039 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Query: 31 QWWIK-DAEFDELIKQRYASLLAQA 54 QWW + +++ ELI S+LAQ Sbjct: 671 QWWTEYYSQYFELICMAKQSILAQE 695
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 26.3 bits (58), Expect = 0.046 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 5/39 (12%) Query: 6 ILCPTDFSDTASHALKYAIEMANLYHVGLRIVHVIEQPM 44 + P + A++ + + A G R V +IE+PM Sbjct: 112 VCVPVGATQVERRAIRESAQGA-----GAREVFLIEEPM 145
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.0 bits (163), Expect = 4e-16 Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 11/149 (7%) Query: 3 RIDKKQAILDTALTLFVSQGFYATSTASIAKQAGVATGTLFHHFASKEALMNHLYISIKQ 62 + +Q ILD AL LF QG +TS IAK AGV G ++ HF K L + ++ + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 63 EFADGIQSQISQKGD-----LEKDAQHLWQVAINWA----MANPLKQEFFQQYSMSPSIA 113 + ++ L + H+ + + + + + M+ Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ- 127 Query: 114 SQVRQQAMNSILGFMGELIHQGQKAGVLA 142 Q ++ + + + +A +L Sbjct: 128 -QAQRNLCLESYDRIEQTLKHCIEAKMLP 155
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 425 bits (1095), Expect = e-147 Identities = 155/513 (30%), Positives = 251/513 (48%), Gaps = 48/513 (9%) Query: 3 TILIVDDNQAVCNALALMLELSGYQTLTCLSPDVALELIRLHDVALVIQDMNFTQDTTSG 62 TIL+ DD+ A+ L L +GY + I D LV+ D+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVM-----PD 59 Query: 63 EEGRNLFYGFRQLQPELPIILLTAWTQLELAVELVKEGAADYMGKPWDDAKLLNSISNLI 122 E +L ++ +P+LP+++++A A++ ++GA DY+ KP+D +L+ I + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 123 SLHRLSKKNAQLSRVESQRMVAIKDAELCGIVFNSGAMQRCVDLALQIAKSDVSVLITGP 182 + + + + +V S AMQ + ++ ++D++++ITG Sbjct: 120 AEPKRRPSKLEDDSQDGM-----------PLVGRSAAMQEIYRVLARLMQTDLTLMITGE 168 Query: 183 NGAGKDKLADIIHANSPLRYKPFIKVNIGALPMDLLEAELFGAEAGAYTGATKARIGRFE 242 +G GK+ +A +H R PF+ +N+ A+P DL+E+ELFG E GA+TGA GRFE Sbjct: 169 SGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFE 228 Query: 243 AADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRRVNVRVVSATNADLAQDIQ 302 A+GGTLFLDEIG++P+ Q +LLRVLQ GE+ +G R +VR+V+ATN DL Q I Sbjct: 229 QAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSIN 288 Query: 303 AGRFREDLFYRLNVIELALPALNERKDDVLPLVEHFI-------GTDFSLLRQTQQALVA 355 G FREDL+YRLNV+ L LP L +R +D+ LV HF+ ++ + + A Sbjct: 289 QGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKA 348 Query: 356 HSWPGNVRELENACKRAVILANSPELTVEDFGLVIHTSMAEPVSTSATNDATNPVTSSVT 415 H WPGNVRELEN +R L +T E + + + + A + + S Sbjct: 349 HPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSIS--- 405 Query: 416 NFVAGALVEKSASPQTQTYASAKHSSAEPMSNPEASNNESSNTEQSCTETPQAEKANIEA 475 + + + + ++ + S ++ + E I A Sbjct: 406 -------------------QAVEENMRQYFASFGDALPPSGLYDRV---LAEMEYPLILA 443 Query: 476 ALDQHRGVIARVAKALGLSRQALYRRMDKYGID 508 AL RG + A LGL+R L +++ + G+ Sbjct: 444 ALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.4 bits (97), Expect = 5e-06 Identities = 47/379 (12%), Positives = 118/379 (31%), Gaps = 104/379 (27%) Query: 18 SKIKRPLMFGLAALLVSGLVWSSMDRDSIATSIKRSELRFATLERGTLIRDIPTTGKIVA 77 S+ R + + + LV + S +E GK+ Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSV----------------LGQVEIV-----ATANGKLTH 92 Query: 78 A-NAPVLYSPEQGSVTLIA-KPGDKVELGEVVATI-------ESHKLTNSL---KQQQAV 125 + + + E V I K G+ V G+V+ + ++ K +SL + +Q Sbjct: 93 SGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTR 152 Query: 126 LEGMKSSLERARLDA-------------------------------RRQQLKAQQTLDMA 154 + + S+E +L + Q+ + + LD Sbjct: 153 YQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKK 212 Query: 155 KVDLEAADRESRRGDQ--------------LIESKLISKIDFEKSKDDLHKAKL-LFAHA 199 + + R + L+ + I+K + ++ +A L + Sbjct: 213 RAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYK 272 Query: 200 GQEALLMKDTLTFELKNTSLEVDRQALVVKEL-----------------ERQVAALNIIA 242 Q + + L+ + + + + ++ +L E + A I A Sbjct: 273 SQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRA 332 Query: 243 PVAGIIGNW-LTEQKARIGQSQPILTVV-DLSAFEAELAVPESYADELGIGMVVELSFGS 300 PV+ + + + + ++ ++ +V + E V + +G + + Sbjct: 333 PVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEA 392 Query: 301 ------EKVMGELSSISPE 313 ++G++ +I+ + Sbjct: 393 FPYTRYGYLVGKVKNINLD 411
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 91.5 bits (227), Expect = 1e-22 Identities = 109/416 (26%), Positives = 172/416 (41%), Gaps = 64/416 (15%) Query: 1 MNKKLLALLIPSILIAGSAQAVEIYNDQTNSINMMGWL-GFAAINDTHDTAVVDNFSRVG 59 M +K+LAL+IP++L AG+A A EIYN N +++ G + G +D + RVG Sbjct: 1 MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVG 60 Query: 60 FRFDRQEKNGWRSFAHTEWGINMVTSDDSLSYSGGQLGAEKNSDFLFNRLGYVGLANDKW 119 F+ + Q + + E Y+ E + RL + GL + Sbjct: 61 FKGETQINDQLTGYGQWE-------------YNVQANTTEGEGANSWTRLAFAGLKFGDY 107 Query: 120 GSLTFGKQWGVYYDVAYTTDVLNVYTGYSVGAYTFGDGGLTGAGRADSAFVYRNS--FG- 176 GS +G+ +GV YDV TD+L + G S YT+ D +T GRA+ YRN+ FG Sbjct: 108 GSFDYGRNYGVLYDVEGWTDMLPEFGGDS---YTYADNYMT--GRANGVATYRNTDFFGL 162 Query: 177 --NLSIALQYAAK-QNGDVALYDKDGIALDDGSHVEFDT--SYGASLTYHFTDKFKVLAG 231 L+ ALQY K ++ + ++G + +D +G S TY F A Sbjct: 163 VDGLNFALQYQGKNESQSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAA 222 Query: 232 INRGDFTGELAGERVD----------------DTNEIIGVGAQYGSFYQYAPNREADGFY 275 D T E D N I + Y P + D Y Sbjct: 223 YTTSDRTNEQVNAGGTIAGGDKADAWTAGLKYDANNIY-LATMYSETRNMTPYGKTDKGY 281 Query: 276 VGFNAHKSKQNELVAGELYDSTGSEFLIAYQYENGFVPS--FLLSY-QDLDTDASTTIQG 332 G A+K++ E+ A YQ++ G P+ FL+S +DL + Sbjct: 282 DGGVANKTQNFEVTA-------------QYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDK 328 Query: 333 DWTRQFAVLGLHYRYSNDTVMFAEAKIDFSDMDDKSFENL---QDNSYAVGIRYFF 385 D + V G Y ++ + + + KI+ D DD +++ D+ A+G+ Y F Sbjct: 329 DLVKYADV-GATYYFNKNFSTYVDYKINLLDDDDPFYKDAGISTDDIVALGMVYQF 383
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 366 bits (940), Expect = e-124 Identities = 130/364 (35%), Positives = 197/364 (54%), Gaps = 29/364 (7%) Query: 168 RANQALSLENDSLKRAMFCPDGVVGAEGGLKKVMVQVDAIAALNTSVLMQGETGCGKEVI 227 RA L+ +VG ++++ + + + ++++ GE+G GKE++ Sbjct: 117 RALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV 176 Query: 228 ANAIHAKSNRAGKPFIKVNCGAIPETLIDSELFGYEKGAFTGAETRKAGYFEQANGGTIF 287 A A+H R PF+ +N AIP LI+SELFG+EKGAFTGA+TR G FEQA GGT+F Sbjct: 177 ARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLF 236 Query: 288 LDEIGELPLSAQVRLLRVLQNSSITRVGGYENVDLDIRVIAATHRNLQAMVHEKTFREDL 347 LDEIG++P+ AQ RLLRVLQ T VGG + D+R++AAT+++L+ +++ FREDL Sbjct: 237 LDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDL 296 Query: 348 WYRLAVFPIDIPALRQRRSDIPLLVQHFIEMLAAKFNLEKLPRVMPEQLSILNNYSWPGN 407 +YRL V P+ +P LR R DIP LV+HF++ A K L+ + R E L ++ + WPGN Sbjct: 297 YYRLNVVPLRLPPLRDRAEDIPDLVRHFVQ-QAEKEGLD-VKRFDQEALELMKAHPWPGN 354 Query: 408 VRELINVLERAIIQKPRGPLTFDLLQAQSDEEVTTKAGQTIIVDPSHASDKLVP------ 461 VREL N++ R P+ +T ++++ + E+ + S Sbjct: 355 VRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQ 414 Query: 462 ------------------LETMISKYISHAMRITGGKLYGPGGAAELLDINPNTLKSKMK 503 L M I A+ T G AA+LL +N NTL+ K++ Sbjct: 415 YFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQ---IKAADLLGLNRNTLRKKIR 471 Query: 504 KLGL 507 +LG+ Sbjct: 472 ELGV 475
>BICOMPNTOXIN#Staphylococcal bi-component toxin signature. Length = 315 Score = 29.1 bits (65), Expect = 0.036 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 332 FFNELADRKARADAIMTRRDEQGKPVYPIGFTNAEGAKDAQTLAWGLKYNVIKKADN 388 F+ + D+K DA++ + QG + N + + + W +YN+ K ++ Sbjct: 63 QFDFVKDKKYNKDALILK--MQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTND 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.2 bits (190), Expect = 1e-18 Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 1/124 (0%) Query: 3 VLLVEDNRLLAKNIIQYLELNEIECDYAETLERAEERIFSSTFDAIILDLNLPDGDGITA 62 +L+ +D+ + + Q L + I + D ++ D+ +PD + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 63 CQRWKEQCIMAPIIMLTARSNLQDRLSGFEAGADDYLVKPFALAELVARL-KVVSQRRPS 121 R K+ P+++++A++ + E GA DYL KPF L EL+ + + +++ + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 122 PKRL 125 P +L Sbjct: 126 PSKL 129
>PF06580#Sensor histidine kinase Length = 349 Score = 28.7 bits (64), Expect = 0.025 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 18/136 (13%) Query: 74 VFSSSPTVKQLHQQYVTRVAPTDINFAAALRLDSPYHYVLCE---DGQPTKVQKLFNSHG 130 +K Q + RV P + + + + L L S Sbjct: 62 FIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSII 121 Query: 131 INTVL---SWPLKHFASDTWSGRFTLLSKYPYEELRLTELEQTLKQAQLTIFEHFHNEIN 187 N V+ W L +F + Y E+ ++ ++AQL +IN Sbjct: 122 FNVVVVTFMWSLLYFG-------WHFFKNYKQAEIDQWKMASMAQEAQL---MALKAQIN 171 Query: 188 PYRQYNLFNQTAIRAL 203 P+ +N N IRAL Sbjct: 172 PHFMFNALN--NIRAL 185
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 436 bits (1124), Expect = e-156 Identities = 149/350 (42%), Positives = 213/350 (60%), Gaps = 6/350 (1%) Query: 6 RAEISRHALKNNLARLHELAPSSKVMAVVKANGYGHGLLNVAQCLDNADGFGLARLEEAL 65 +A + ALK NL+ + + A ++V +VVKAN YGHG+ + + DGF L LEEA+ Sbjct: 6 QASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLNLEEAI 65 Query: 66 ALRAGGVKAKLLLLEGFFRATDLVTLVEHDIETVVHHESQIEMLEQAELNKPVTVWMKVD 125 LR G K +L+LEGFF A DL +H + T VH Q++ L+ A L P+ +++KV+ Sbjct: 66 TLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKVN 125 Query: 126 SGMHRLGFVPDEFHQIYQRLLACDNIAKPINLMTHFACADEPDNDCTAKQIAVFEELTKD 185 SGM+RLGF PD ++Q+L A N+ + LM+HFA A+ PD + +A E+ + Sbjct: 126 SGMNRLGFQPDRVLTVWQQLRAMANV-GEMTLMSHFAEAEHPDG--ISGAMARIEQAAEG 182 Query: 186 LLGDRTLANSAGALFWQQSQASWIRPGIALYGVSPVVGDLGT--KHGLIPAMELVSQLIA 243 L R+L+NSA L+ ++ W+RPGI LYG SP G GL P M L S++I Sbjct: 183 LECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPS-GQWRDIANTGLRPVMTLSSEIIG 241 Query: 244 IRDHKAGQPVGYGSHWVAEKDTKLGVVAIGYGDGYPRNAPLGTPVLINGRLAPIVGRVSM 303 ++ KAG+ VGYG + A + ++G+VA GY DGYPR+AP GTPVL++G VG VSM Sbjct: 242 VQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTVSM 301 Query: 304 DMLTVDLGAGAKDNVGDKAVLWGKDLPVEEVAEHIGTIAYELVTKLTPRV 353 DML VDL + +G LWGK++ +++VA GT+ YEL+ L RV Sbjct: 302 DMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRV 351
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 48.1 bits (114), Expect = 7e-08 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 661 SVPVNFLS-SVDTTGGNSGSPVFNGKGELVGLNFDSTYEAITKDWFFNPTI 710 + + + TTGGNSGSPVFN K E++G+++ F N + Sbjct: 220 YLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENV 270
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 30.0 bits (67), Expect = 0.019 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 3/64 (4%) Query: 373 LVKEMGTGLIVTEVMGQGVNTVTGDYSRGAAGFYVENGVILYPVEEITIAGNLKDM---F 429 ++E G+ + EV Q + Y+ YV +LY E +G+ K+ F Sbjct: 232 CLRENGSTIYPNEVSAQMQDAANSVYAVHGLKRYVNFHFVLYTTEYSCPSGDAKEGLEGF 291 Query: 430 QNIL 433 L Sbjct: 292 TASL 295
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 27.2 bits (60), Expect = 0.043 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 14/121 (11%) Query: 44 SKTQVQKLNLDETLYDNVLKAKTIKINTEAHRRHIQYIGKL--------------MRYVD 89 SK+ + + + D A + + +R I I +L ++Y Sbjct: 219 SKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQATQGNTKVIYLKYAK 278 Query: 90 LEELEVAIKNVLNQNSNESARTNVADKTRDQLLAEGDSAVQALIEQHPEFDRQKLRQYIR 149 +L + + + +E ++ + ALI L + I Sbjct: 279 ASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIA 338 Query: 150 Q 150 Q Sbjct: 339 Q 339
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 551 bits (1421), Expect = 0.0 Identities = 311/348 (89%), Positives = 330/348 (94%), Gaps = 1/348 (0%) Query: 1 MFKKLRGIFSNDLSIDLGTANTLIYVREEGIVLNEPSVVAIRGERSGSGQKSVAAVGTEA 60 M KK RG+FSNDLSIDLGTANTLIYV+ +GIVLNEPSVVAIR +R KSVAAVG +A Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDR-AGSPKSVAAVGHDA 59 Query: 61 KQMLGRTPGNIQAIRPMKDGVIADFYVTEKMLQHFIKQVHNNSVFRPSPRVLVCVPVGAT 120 KQMLGRTPGNI AIRPMKDGVIADF+VTEKMLQHFIKQVH+NS RPSPRVLVCVPVGAT Sbjct: 60 KQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGAT 119 Query: 121 QVERRAIRESAMGAGAREVYLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAIISLN 180 QVERRAIRESA GAGAREV+LIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVA+ISLN Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN 179 Query: 181 GVVYSSSVRIGGDKFDDAIINYVRRNYGSLIGEATAERIKHTIGTAYPGDEVLEIEVRGR 240 GVVYSSSVRIGGD+FD+AIINYVRRNYGSLIGEATAERIKH IG+AYPGDEV EIEVRGR Sbjct: 180 GVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGR 239 Query: 241 NLAEGVPRSFTLNSNEILEALQEPLSGIVSAVMVALEQSPPELASDISERGMVLTGGGAL 300 NLAEGVPR FTLNSNEILEALQEPL+GIVSAVMVALEQ PPELASDISERGMVLTGGGAL Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299 Query: 301 IRDLDRLLMQETGIPVMIAEDPLTCVARGGGRALEMIDMHGGDLFSEE 348 +R+LDRLLM+ETGIPV++AEDPLTCVARGGG+ALEMIDMHGGDLFSEE Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 33.5 bits (76), Expect = 0.007 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 14/95 (14%) Query: 279 GYIEAPETGEYTFAIDGDDAIELLIDGEVIKGFYGVHSTCDCTRYQGKVSLEQG-AHTIE 337 G+I+ ++ EYTFA D+ + + +D + + K+ LE+G + I+ Sbjct: 96 GFIKVKKSDEYTFATSADNHVTMWVDDQ---------EVINKASNSNKIRLEKGRLYQIK 146 Query: 338 LRFHE---TFGAEAFRLYWQPPSANSLTIVPASQL 369 +++ T F+LYW S N ++ + L Sbjct: 147 IQYQRENPTEKGLDFKLYWT-DSQNKKEVISSDNL 180
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 34.1 bits (78), Expect = 3e-04 Identities = 12/20 (60%), Positives = 18/20 (90%) Query: 20 RGRGFTLVEMVTVIIILGVL 39 + RGFTL+E++ VI+I+GVL Sbjct: 6 KQRGFTLLEIMVVIVIIGVL 25
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 29.9 bits (67), Expect = 0.004 Identities = 12/42 (28%), Positives = 28/42 (66%), Gaps = 3/42 (7%) Query: 14 QKAFTLIELVVGMVVISIAFVLLSTMLFPQA--ERAADTLHR 53 Q+ FTL+E+++ ++++ ++ ++ + FP + + AA TL R Sbjct: 3 QRGFTLLEMMLILLLMGVSAGMV-LLAFPASRDDSAAQTLAR 43
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 44.5 bits (105), Expect = 2e-08 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 1 MHRARQHAGFTLVELVTTIILIAILAVVVIPRLLTSSSYSAFTLQDEFISELRKVQIMAM 60 M + GFTL+E++ I++I +LA +V+P L+ + +++ + I+A+ Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGN--------KEKADKQKAVSDIVAL 52 Query: 61 NNQDRCYRL 69 N Y+L Sbjct: 53 ENALDMYKL 61
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 50.3 bits (120), Expect = 2e-10 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%) Query: 2 KMQKQSGFTLIELVVVIIILGILAVTAAPKFINLQSDARA----STLQGMKGAL 51 KQ GFTL+E++VVI+I+G+LA P + + A S + ++ AL Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENAL 56
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 47.2 bits (112), Expect = 2e-09 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Query: 9 MQKQNGFTLIELVVVIIILGILAVTAAPKFINLQSDARA----SALQGVKGAI 57 KQ GFTL+E++VVI+I+G+LA P + + A S + ++ A+ Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENAL 56
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 42.6 bits (100), Expect = 1e-07 Identities = 14/35 (40%), Positives = 27/35 (77%) Query: 6 QKGFSLIELVIVIVILGLLAATAIPRFLNVTDDAE 40 Q+GF+L+E+++VIVI+G+LA+ +P + + A+ Sbjct: 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKAD 41
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 298 bits (764), Expect = e-100 Identities = 112/406 (27%), Positives = 204/406 (50%), Gaps = 4/406 (0%) Query: 1 MPTYQYRGRSAQGEQVKGLVDAASESAAADQLMSRGVIPLEL----VLAKEVKEFNLKTL 56 M Y Y+ AQG++ +G +A S A L RG++PL + ++ L Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 57 FKGKVALEELQIFTRQMYSLTRSGIPILRAIAGLSETTHSVRMKEALDDISEQLTSGRPL 116 K +++ +L + TRQ+ +L + +P+ A+ +++ + + + + + ++ G L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 117 SSAMNQHPDVFDALFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVL 176 + AM P F+ L+ +MV GE +G L+ +L+ Y E+ Q+ R RI+ AM YP + Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 177 IAIAIAMVILNIMVIPKFAEMFSRFGADLPWATKLLINTSNVFVNYWPLMLLVLVAGFVG 236 + + IL +V+PK E F LP +T++L+ S+ + P MLL L+AGF+ Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 237 IRYWHSTEKGEKQWDKWKLNIPAVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADA 296 R EK + + L++P +G I +RY R+ S++ ++ VP+ QA+ + D Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 297 VDNAYMHDSIVGMRRGIESGESMLRVSNNSQLFTPLVLQMVAVGEETGQIDQLLNDAADF 356 + N Y + + G S+ + + LF P++ M+A GE +G++D +L AAD Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 357 YEGEVDYDLKNLTAKLEPLLIGFVACIVLVLALGIYLPMWDMLNVV 402 + E + EPLL+ +A +VL + L I P+ + ++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 35.3 bits (81), Expect = 2e-04 Identities = 18/96 (18%), Positives = 39/96 (40%) Query: 332 SLAMIPDSSDLALKKWHQQSDLAQKQKDFPTAEQSFRQLAKHEPNQGRWWMGLAYALDAQ 391 ++AM+ + S L++ + + + + A + F+ L + R+++GL A Sbjct: 24 TIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAM 83 Query: 392 QKYTEAKSAYNQALSQGNLSVQAKVYVDNRLLQLGA 427 +Y A +Y+ + + LLQ G Sbjct: 84 GQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGE 119
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 170 bits (431), Expect = 1e-47 Identities = 78/347 (22%), Positives = 144/347 (41%), Gaps = 37/347 (10%) Query: 211 NSNEQTNGTFIRSK--TKSDFWGELKETLVSIVGNTGGGRQ---------VVVTPQAGLV 259 Q N I K SD L ++ + + Q + Sbjct: 262 QQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNAL 321 Query: 260 TIRAYPNEIRQVRSFIKTAESHLQRQVILEAKVLEVTLSDGYQQGIHW---ESVLGHAGS 316 + A P+ + + I + + QV++EA + EV +DG GI W + + + Sbjct: 322 IVTAAPDVMNDLERVIAQLDIR-RPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTN 380 Query: 317 TDISFGTSPAAGLG----DTITNALGGVTSI------KLEGSDFSTMISLLDTQGDVDVL 366 + + T+ A T++++L S +++ +++ L + D+L Sbjct: 381 SGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDIL 440 Query: 367 SSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGNTPVTTPEVELTPFFSGIALDVTPQI 426 ++P + +N +A VG + +T S T +G+ T E + GI L V PQI Sbjct: 441 ATPSIVTLDNMEATFNVGQEVPVLT--GSQTTSGDNIFNTVERKTV----GIKLKVKPQI 494 Query: 427 DEQGNVLLHIHPSVIDIKEQVKSIKIADSTLELPLAQSEIRESDTVIKAASGDVVVIGGL 486 +E +VLL I V + + + ++ +L + R + + SG+ VV+GGL Sbjct: 495 NEGDSVLLEIEQEVSSVADAA-----SSTSSDLGATFN-TRTVNNAVLVGSGETVVVGGL 548 Query: 487 MKSENIELVSKVPLLGDIPFLGEAFTNRANSTVKTELVILLKPIVVG 533 + + KVPLLGDIP +G F + + K L++ ++P V+ Sbjct: 549 LDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIR 595
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 30.2 bits (68), Expect = 0.005 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Query: 11 TLFPPELRLSFLRLNQATLVIVVGLLCASA---LVFGLNTSLESDKAQLVQTKQALDAEK 67 L P + F R AT + ++ AS LV GLN ++ ++T+ + Sbjct: 6 KLVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAIDV 65 Query: 68 KDLEAALAKRGPSEALVAEVN 88 AAL + +++EV Sbjct: 66 GVYRAALEPLELGDVIISEVR 86
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 106 bits (265), Expect = 3e-32 Identities = 56/118 (47%), Positives = 82/118 (69%), Gaps = 2/118 (1%) Query: 1 MFDGIGFMELLLIGILGLVVLGPERLPTAVRSISSWIRAMKKMANSVKDELEQELKIEQL 60 MFD IGF ELLL+ I+GLVVLGP+RLP AV++++ WIRA++ +A +V++EL QELK+++ Sbjct: 1 MFD-IGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEF 59 Query: 61 HSDLKNAESQGLKNLSPELQDSIDQLKEAAQSVNRPYQVEDV-PAAKETPAKETPTAE 117 LK E L NL+PEL+ S+D+L++AA+S+ R Y D A+ E P + Sbjct: 60 QDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVK 117
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.2 bits (70), Expect = 0.015 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 2/84 (2%) Query: 382 AIRYNDERLNKLKIQKDALIQANKAQETKEEALRIEARSSEKLSQMVQERTLELEIALRE 441 A+ + L A E ++ L +++ Q ++ A ++ Sbjct: 268 ALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQ 327 Query: 442 LNEANQKLTEQTRVD--SLTGVKN 463 L +QKL EQ ++ S ++ Sbjct: 328 LEAEHQKLEEQNKISEASRQSLRR 351
>SECA#SecA protein signature. Length = 901 Score = 1324 bits (3427), Expect = 0.0 Identities = 648/906 (71%), Positives = 756/906 (83%), Gaps = 6/906 (0%) Query: 1 MFGKLLTKVFGSRNDRTLKAFGKVVNKVNALEAEYEKLSDEELKAKTAHFRERLDGGESL 60 M KLLTKVFGSRNDRTL+ KVVN +NA+E E EKLSDEELK KTA FR RL+ GE L Sbjct: 1 MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVL 60 Query: 61 EGVLPEAFATVREASKRVFDMRHFDVQLIGGMILDSNRIAEMRTGEGKTLTATLPAYLNG 120 E ++PEAFA VREASKRVF MRHFDVQL+GGM+L+ IAEMRTGEGKTLTATLPAYLN Sbjct: 61 ENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNA 120 Query: 121 LTGKGVHVITVNDYLAGRDAENNRPLFEFLGLTVGINVAGLGQVEKKAAYDADITYGTNN 180 LTGKGVHV+TVNDYLA RDAENNRPLFEFLGLTVGIN+ G+ K+ AY ADITYGTNN Sbjct: 121 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNN 180 Query: 181 EFGFDYLRDNMAFSPSERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKIN 240 E+GFDYLRDNMAFSP ERVQR LHYAL+DEVDSILIDEARTPLIISG AEDSSE+Y ++N Sbjct: 181 EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVN 240 Query: 241 TLIPNLIAQEKEDTEDYVGEGDYSVDEKSKQVHMTERGQEKVEVLLTERGMLAEGDSLYS 300 +IP+LI QEKED+E + GEG +SVDEKS+QV++TERG +E LL + G++ EG+SLYS Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300 Query: 301 AANISLLHHVNAALRAHTLFEKDVDYIVQDNEVVIVDEHTGRTMPGRRWSEGLHQAVEAK 360 ANI L+HHV AALRAH LF +DVDYIV+D EV+IVDEHTGRTM GRRWS+GLHQAVEAK Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK 360 Query: 361 EGVHIQNENQTLASITFQNFFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVR 420 EGV IQNENQTLASITFQN+FR YEKLAGMTGTADTEAFEF IY LDTVVVPTNRPM+R Sbjct: 361 EGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR 420 Query: 421 KDHPDLVYLTAEEKYAAIVKDIVGCRERGQPVLVGTVSIEQSELLHSLLKKEKIPHEILN 480 KD PDLVY+T EK AI++DI +GQPVLVGT+SIE+SEL+ + L K I H +LN Sbjct: 421 KDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN 480 Query: 481 AKFHEREADIVAQAGRTGAVTVATNMAGRGTDIVLGGNWNMEIEALTNPTDEQKAKIKAD 540 AKFH EA IVAQAG AVT+ATNMAGRGTDIVLGG+W E+ AL NPT EQ KIKAD Sbjct: 481 AKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 540 Query: 541 WKIRHDEVVEAGGLHILGTERHESRRIDNQLRGRSGRQGDSGSSRFYLSMEDSLMRIFAS 600 W++RHD V+EAGGLHI+GTERHESRRIDNQLRGRSGRQGD+GSSRFYLSMED+LMRIFAS Sbjct: 541 WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFAS 600 Query: 601 DRVSSMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVY 660 DRVS MM+KLGM+ GEAIEHPWV++AI NAQRKVE+RNFDIRKQLLE+DDVANDQR+ +Y Sbjct: 601 DRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIY 660 Query: 661 AQRNELMDAESIQDTITNIQEDVVNGLVDQYIPRQSVEELWDVEGLEKRLQQEYAMSLPI 720 +QRNEL+D + +TI +I+EDV +D YIP QS+EE+WD+ GL++RL+ ++ + LPI Sbjct: 661 SQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPI 720 Query: 721 QEWLDKEDDLHEETLRERIVETWVNAYKAKEEMVGEQVLRQFEKAVMLQTLDGLWKEHLS 780 EWLDKE +LHEETLRERI+ + Y+ KEE+VG +++R FEK VMLQTLD LWKEHL+ Sbjct: 721 AEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLA 780 Query: 781 AMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQMLESLKHDVISVLSKVQVQAQSDVEEM 840 AMD+LRQGIHLRGYAQK+PKQEYKRESF +F MLESLK++VIS LSKVQV+ +VEE+ Sbjct: 781 AMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEEL 840 Query: 841 EERRRQEDAKIRRDYQHAEAEAIVGAEESAALAATQPTVRDGEKVGRNDPCPCGSGKKYK 900 E++RR E ++ A+ + + ++ +A AA KVGRNDPCPCGSGKKYK Sbjct: 841 EQQRRMEAERL------AQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYK 894 Query: 901 QCHGKL 906 QCHG+L Sbjct: 895 QCHGRL 900
>PF06580#Sensor histidine kinase Length = 349 Score = 32.5 bits (74), Expect = 0.002 Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 6 FIQGRNGATRWQPGKRWLLLPILLIAAGTGLYQHNAKQLTQQQANVDSERMAREEQKDEL 65 FI + A + +++ + LY +QA +D +MA Q+ +L Sbjct: 104 FINTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQL 163 Query: 66 IALKS 70 +ALK+ Sbjct: 164 MALKA 168
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 61.3 bits (149), Expect = 1e-12 Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 20/222 (9%) Query: 150 SGMRMEAKVHIVTC----ANDMAKNITK-SVERCGLKVDDLVFSAIASADSVLTDDEKDL 204 S M ++ C A + + + S + G + L+ +A+A + Sbjct: 100 SNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEAT 159 Query: 205 GVCLVDIGGGTTDIAVYTNGALRHCAVVPVAGNQVTNDIAKIFR------TPLSHAEQIK 258 G +VDIGGGTT++AV + + + + V + G++ I R + AE+IK Sbjct: 160 GSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIK 219 Query: 259 VQHASARSAMVSREDSIEVPS---VGGRPSR-SMSRHTLAEVVEPRYQELFELILKQLRD 314 + SA IEV G P +++ + + E ++ + ++ L Sbjct: 220 HEIGSAYPG--DEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQ 277 Query: 315 SGLE---DQVAAGIVITGGTASIEGAVDIAEATFGMPVRMAQ 353 E D G+V+TGG A + + G+PV +A+ Sbjct: 278 CPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAE 319
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 33.2 bits (76), Expect = 0.002 Identities = 51/243 (20%), Positives = 79/243 (32%), Gaps = 70/243 (28%) Query: 1 MNKLIINANVFNGTDNALIENVSILIEDNLIVKIG-----------EIDQSVADQVIDAK 49 ++ +I NA + + I I ++D I IG I +VI + Sbjct: 68 VDTVITNALILDHWG---IVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGE 124 Query: 50 GGTVMPGLIDAHVHITLSAPFNVIDTMTREEVAIRSARISEEMLMRGFTTVRDVAGNTLG 109 G V G +D+H+H + EE LM G T + + G T Sbjct: 125 GKIVTAGGMDSHIHFI-------------------CPQQIEEALMSGLTCM--LGGGT-- 161 Query: 110 LKKSIDNGYAKGPRILPSMAAVSQTSGHSDYRQNQAQERIGQHEDSPMMKLGAMKVADGR 169 G A G A + T G R+ + D+ M L G Sbjct: 162 -------GPAHGTL------ATTCTPGPWHI------ARMIEAADAFPMNLAFA--GKGN 200 Query: 170 AEVLKAVREQLFMGASQIKIMAGGGASSTFDPLDTLQFTLDEMKAAVEVATDYGTYVAAH 229 A + A+ E + GA+ +K+ G T + + VA +Y V H Sbjct: 201 ASLPGALVEMVLGGATSLKLHEDWGT------------TPAAIDCCLSVADEYDVQVMIH 248 Query: 230 IHT 232 T Sbjct: 249 TDT 251
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (569), Expect = 5e-78 Identities = 79/153 (51%), Positives = 107/153 (69%) Query: 5 AIYPGTFDPVTNGHADLIERAANLFEHVIIGIAANPSKQPRFTLAERVELLKTVTAHLDN 64 AIYPG+FDP+T GH D+IER LF+ V + + NP+KQP F++ ER+E + AHL N Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLPN 62 Query: 65 VEVVGFSGLLVDFAKDQNASVLVRGLRAVSDFEYEFQLANMNRRLSPDLESVFLTPAEEN 124 +V F GL V++A+ + A ++RGLR +SDFE E Q+AN N+ L+ DLE+VFLT + E Sbjct: 63 AQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTEY 122 Query: 125 SFISSTLVKEVALHGGDVSQFVHIEVANALTKK 157 SF+SS+LVKEVA GG+V FV VA AL + Sbjct: 123 SFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQ 155
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.010 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 27/99 (27%) Query: 356 LVDNAIKY----SGEGAEISIS----QNRNVISIQDNGPGIPEGSRDKVFERLVRLDPSR 407 LV+N IK+ +G +I + + +++ G + ++ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK-------------- 308 Query: 408 HHKGTGLGLSMVKAILSR---HNAKIALTDNQPGLKVII 443 + TG GL V+ L A+I L++ Q + ++ Sbjct: 309 --ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 1e-20 Identities = 27/123 (21%), Positives = 56/123 (45%) Query: 2 KILMVEDDATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQLDGLK 61 IL+ +DDA + + G+++ ++ + DL++ D ++P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGES 121 LL ++ PVL++SA + +K G DY+ KPF +EL+ + + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 QPA 124 +P+ Sbjct: 125 RPS 127
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.7 bits (74), Expect = 0.002 Identities = 13/40 (32%), Positives = 17/40 (42%) Query: 26 CKAGEVLAVVGPSGGGKSTLLRMIAGLTKPEDGEIRYGDK 65 CK + + G G GKSTL+ + GL D G Sbjct: 593 CKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG 632