>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.4 bits (66), Expect = 0.037 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 3/65 (4%) Query: 127 PSRGDSRLNPKYGFDTFVIGGSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHA 186 P R S+L ++G S V L I G+SG GK + A Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL--TLMITGESGTGKELVARA 179 Query: 187 IGHYA 191 + H Sbjct: 180 L-HDY 183
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.4 bits (149), Expect = 3e-13 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 3/111 (2%) Query: 19 SVVVIDDESLVRSGIAMVLGASPRIAVRAAVSSDTAVATVREHAPDVVLLDIRMPAPDGL 78 +++V DD++ +R+ + L + VR ++ T + D+V+ D+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAG-YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 79 AILAELMAE-PRPPAVAMLTTFDTDDQVLEALHRGASGFLLKDTDPEQLAR 128 +L + P P V +++ +T ++A +GA +L K D +L Sbjct: 64 DLLPRIKKARPDLP-VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG 113
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 45.8 bits (108), Expect = 9e-08 Identities = 40/280 (14%), Positives = 80/280 (28%), Gaps = 38/280 (13%) Query: 32 IGGESARAASSASGPASGASDTGMSVSDADAAESENYWTPDKIAAAVPADGVTVTPQKQS 91 + + A+ S PA+ A + + +S TP + + Sbjct: 11 LFVATLTTATLVSSPAANALSSKAMDNHPQQTQSSKQQTPKIQKGGNLKP--LEQREHAN 68 Query: 92 PSLGASAVTSVFE----PVYWIGRLYYTAGGIDYACTASSIKSDSKLVIATAGHCLYHK- 146 L + + + + + A + + + D+ + T H + Sbjct: 69 VILPNNDRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDT---LLTNKHVVDATH 125 Query: 147 GEFSTNLRFIPAWDGANKPLLTWGANDYQVPRA------WRYQEDQQHDAGFVQLKPQRS 200 G+ F A + N P + A ++ ++Q+ +KP Sbjct: 126 GDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKP--- 182 Query: 201 WLGAKQYLADRAGATATNFGLAKTGLHYEAFGYEQVSGFTSHPLLTCSGNGYRRFSQFSL 260 AT +N + + GY + G + Sbjct: 183 -------------ATMSNNAETQVNQNITVTGY--PGDKPVATMWESKGKITY--LKGEA 225 Query: 261 LSINDCAMVGGGSGGPVYHESGKGVNGTQVGVVSSVIPQG 300 + D + GG SG PV++E + V G G V + Sbjct: 226 MQY-DLSTTGGNSGSPVFNEKNE-VIGIHWGGVPNEFNGA 263
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 46.2 bits (109), Expect = 8e-08 Identities = 48/290 (16%), Positives = 92/290 (31%), Gaps = 32/290 (11%) Query: 39 GGVIQGGALSAAPALAATPDVSAVSAASLGSRAFSDEEMTSTSDYWTVDRLQRA-----I 93 G ++ +L A AT VS+ +A +L S+A + + S ++Q+ + Sbjct: 3 GKFLKVSSLFVATLTTAT-LVSSPAANALSSKAMDNHPQQTQSSKQQTPKIQKGGNLKPL 61 Query: 94 PDDGSASVVGASDAGSGVVHSVSGSITATAWVGKIAFRRGGLDRLCSASAVHSDSGYLVA 153 A+V+ ++ + + +G V I + S V D + Sbjct: 62 EQREHANVILPNNDRHQITDTTNGHYAP---VTYIQVEAPTGTFIASGVVVGKD---TLL 115 Query: 154 TAGHCLLNDDQTATGVTFVP-GWDGKNMPYGTWIAKFYSVTPEWRVRADDSHDVGFIKVQ 212 T H + + P + N P G + A+ + D+ +K Sbjct: 116 TNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSG-------EGDLAIVKFS 168 Query: 213 PI-GSKSLADTVSALRV-NFSLAKPQLHYFSLAYGNIGGGFQAKPLSTCVGPAYRLHDEQ 270 P +K + + V + N + + + Y G + G L E Sbjct: 169 PNEQNKHIGEVVKPATMSNNAETQVNQNITVTGY---PGDKPVATMWESKGKITYLKGEA 225 Query: 271 SLAMIGCKAVGGMSGGPVYHASTEEPRGTQVGVIGRNVETAYGDAIAFTP 320 GG SG PV++ +G+ V + A+ Sbjct: 226 MQ--YDLSTTGGNSGSPVFNEK-----NEVIGIHWGGVPNEFNGAVFINE 268
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 26.4 bits (58), Expect = 0.027 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 4/36 (11%) Query: 5 NDLAARAERGELTPIPGTDLHGAAAANAGRAMLMDA 40 + + R L P+ HG+A N G L++ Sbjct: 202 QEESIRFHNCSLFPV----YHGSAKNNIGIDNLIEV 233
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 34.6 bits (79), Expect = 3e-04 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 45/186 (24%) Query: 81 VVTANHCV-ARIGERVFVRNELESRHGHVPPIGT-----VYWRSDDVDLALIKIDPIVHV 134 ++T H V A G+ ++ + + P G + S + DLA++K P Sbjct: 114 LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPN--- 170 Query: 135 SYTCGSSSHGAPHCLPVTTWTPNALPRVLTASLRMRSIYAQPVIGYDNPGLNEAFATSGS 194 + + T + NA +V V GY PG ++ AT Sbjct: 171 -----EQNKHIGEVVKPATMSNNAETQVNQNI---------TVTGY--PG-DKPVATMWE 213 Query: 195 TTGVQVNWRNLSVRAWPPGFRDPRSGDQAASSTTDFLLPGDSGGPVFNPDTGMLYGIMTD 254 + G L A G+SG PVFN + + GI Sbjct: 214 SKGKI---TYLKGEAM---------------QYDLSTTGGNSGSPVFN-EKNEVIGIHWG 254 Query: 255 QVPHRL 260 VP+ Sbjct: 255 GVPNEF 260
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 31.5 bits (71), Expect = 0.003 Identities = 10/24 (41%), Positives = 14/24 (58%) Query: 235 PGDSGGPVVNYSAELLGIISSVLP 258 G+SG PV N E++GI +P Sbjct: 234 GGNSGSPVFNEKNEVIGIHWGGVP 257
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 31.9 bits (72), Expect = 0.003 Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 228 PGDSGGPVVSKDRRLLGIISGDVPNT 253 G+SG PV ++ ++GI G VPN Sbjct: 234 GGNSGSPVFNEKNEVIGIHWGGVPNE 259
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.3 bits (60), Expect = 0.020 Identities = 17/54 (31%), Positives = 23/54 (42%) Query: 70 GNIRVTFSGAYTVREFQGDKGTILQHKVFVDEIGASFFGQDVTIARRTASTSTT 123 GN+ VTF G F GT L + V++ G+ AR A S+T Sbjct: 665 GNLNVTFKGKSEQNRFLLTGGTNLNGDLTVEKGTLFLSGRPTPHARDIAGISST 718
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 109 bits (274), Expect = 5e-28 Identities = 52/254 (20%), Positives = 80/254 (31%), Gaps = 76/254 (29%) Query: 181 AEHAGAGTVIGDIDSGIAPDNPSFAGKPLGSAPGAEPYRDGTGIAFRKADGSVFHGTCET 240 + G G + +D+G D+P + Sbjct: 36 NQTRGRGVKVAVLDTGCDADHPDLKAR--------------------------------- 62 Query: 241 GDGFTAADCSTKVIGARSFVSGRDASGVPLGPQERRSARDTNGHGSHTASTAAGDADVPA 300 +IG R+F + + +D NGHG+H A T A + Sbjct: 63 ------------IIGGRNFTDDDEG--------DPEIFKDYNGHGTHVAGTIAATENENG 102 Query: 301 VIHGRTLDTIAGVAPAARIAAYKVCWDGPDPTVETDDGCAASDIIAAIDQATADGVDVIN 360 V+ GVAP A + KV II I A VD+I+ Sbjct: 103 VV---------GVAPEADLLIIKVLNK--------QGSGQYDWIIQGIYYAIEQKVDIIS 145 Query: 361 MSLGGDGPSPDEEQRALLGAASAGIFVAASAGNSGPDASTVSNL-----EPWVTTVAASS 415 MSLGG P+ + A+ A ++ I V +AGN G L V +V A + Sbjct: 146 MSLGGPEDVPELHE-AVKKAVASQILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGAIN 204 Query: 416 VPDNYAATLTLGDG 429 + + + Sbjct: 205 FDRHASEFSNSNNE 218 Score = 60.6 bits (147), Expect = 1e-11 Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 31/148 (20%) Query: 534 VAYAAKAGATATLTAGDTSGVERPAPQVTGFSSRGPDPADGADIIKPDITAPGSGIPAAY 593 + Y ++ A + + FS+ + D+ APG I + Sbjct: 188 LGYPGCYNEVISVGAINFDR------HASEFSNSNNEV---------DLVAPGEDILSTV 232 Query: 594 KDVDGRPGFAALSGTSMSSPHIAGFALVYLG-----IHPTASPSEIKSAMMTTATDTVDA 648 +A SGTSM++PH+AG + + E+ + ++ + Sbjct: 233 PG----GKYATFSGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGN- 287 Query: 649 QGKAVTDPFAQGAGEIASARYLHPGLVY 676 P +G G + ++ Sbjct: 288 ------SPKMEGNGLLYLTAVEELSRIF 309
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 32.3 bits (73), Expect = 0.002 Identities = 26/168 (15%), Positives = 45/168 (26%), Gaps = 25/168 (14%) Query: 123 CTATVINTPDGDTIATAASCLIDRGAKTVHRLATFVPSTDHAAAPQGIWPIRVAEATPQW 182 + V+ DT+ T +D H L F + + P G + Sbjct: 104 ASGVVVGK---DTLLTNKHV-VDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYS-- 157 Query: 183 NATGATSADVAFAKV-AGPTGTHLKDAAGSVPAVF-DTITPPATELLRVFAYPQEKPYSG 240 D+A K H+ + PA + + + V YP +KP + Sbjct: 158 -----GEGDLAIVKFSPNEQNKHIGEVVK--PATMSNNAETQVNQNITVTGYPGDKPVAT 210 Query: 241 QKLVGCGAIAHRLAAPSAARE---IGCDINDGAMGGPALSPAGELRSV 285 + E G G P + E+ + Sbjct: 211 MW-------ESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGI 251
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 45.8 bits (108), Expect = 1e-07 Identities = 47/277 (16%), Positives = 90/277 (32%), Gaps = 37/277 (13%) Query: 6 KNRFSVLALLLLVVMVGQSSVARPAQAAGPTGTAFSDDTGQSFSDAEASDAVRSWTPEAL 65 K +F ++ L + + + V+ PA A + A + Q+ S + TP+ Sbjct: 2 KGKFLKVSSLFVATLTTATLVSSPAANA-LSSKAMDNHPQQTQSSKQQ-------TPKIQ 53 Query: 66 AAASDLDRPSDAVNAPVTGATEQALITQ-GAGTFEPVYWIGRIYFDVDGRQYSCSGSSIR 124 + + ++ IT G + PV I + + SG + Sbjct: 54 KGGNLKPLEQREHANVILPNNDRHQITDTTNGHYAPV---TYIQVEAPTGTFIASGVVVG 110 Query: 125 SDSQLVVATAAHCL-YDHGEWSTRVVFIPAWDGANKPLGVWGAFFYAVSRDWRTTEDPGH 183 D+ + T H + HG+ F A + N P G + + T Sbjct: 111 KDT---LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGG-----FTAEQ--ITKYSGEG 160 Query: 184 DAAFIKMAPKTAWDGSKEYLASKAG-APAPTFSAAMPGLHFEAFGYRPLGGYVPAPLYTC 242 D A +K +P + +++ A + + GY G A ++ Sbjct: 161 DLAIVKFSP----NEQNKHIGEVVKPATMSNNAETQVNQNITVTGYP--GDKPVATMWES 214 Query: 243 AGEGRHFRGFASIPEYEIA-NCDPPGGASGGPVYHAS 278 G+ + + + GG SG PV++ Sbjct: 215 KGK------ITYLKGEAMQYDLSTTGGNSGSPVFNEK 245
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 81.6 bits (201), Expect = 2e-20 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 1/190 (0%) Query: 3 IHDKVFVVTGGGNGMGRQVALEIMRRGGHVAAVDLNENGLADTLQLAQSSTGRLTVHTAN 62 I K+ +TG G+G VA + +G H+AAVD N L + ++ A+ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 VTDRNAIAVLRDEVLMQHPHVDGVINIAGIIHSFAPFEELPIDVTQRVMDVNFWGTVNVC 122 V D AI + + + +D ++N+AG++ L + + VN G N Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLR-PGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 123 RAFLPILRSRPSAALVNMSSLSALIPFASQTFYGASKGAVKQFSEGLYAEALGTGLTVST 182 R+ + R S ++V + S A +P S Y +SK A F++ L E + + Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 183 IFPGNISTNL 192 + PG+ T++ Sbjct: 185 VSPGSTETDM 194
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 28.7 bits (64), Expect = 0.031 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 92 DIDLMKAAWNSFFVSAVTAVAVVFFSTLAGFAFAKLRFRG 131 + D + W +F + V +A V + G F + F+G Sbjct: 13 NFDFFRWQWATFGAAIVMMIASVILPLVIGLNFG-IDFKG 51
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.3 bits (164), Expect = 9e-16 Identities = 30/181 (16%), Positives = 64/181 (35%), Gaps = 12/181 (6%) Query: 8 RGPYRKGVERRREIVAAAAQLFSESGYTHASMRELAKRVGLSQALLLHYFSDKEDLLVEV 67 R ++ E R+ I+ A +LFS+ G + S+ E+AK G+++ + +F DK DL E+ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 68 LNLRDASVAEYLADIADSDIAT-----RSRKVARHAAEHEGLTSLYIALSAEAIDPEHPA 122 L ++++ E + R + + + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 123 HEYFADHYRSAQEQTR-------EPGADAGVVPAGVSPELVTALGIAVMDGLQVQRQYRP 175 R+ ++ + +A ++PA + + + GL + P Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182 Query: 176 D 176 Sbjct: 183 Q 183
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.4 bits (63), Expect = 0.036 Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 4/130 (3%) Query: 11 TLRDIARIAGVSVPTVSKVLNGRGDVSAETRERVQE---ATARVGYRRMPSAAVDALIAE 67 +L +IA+ AGV+ + + D+ +E E + + P + L Sbjct: 33 SLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREI 92 Query: 68 QLVDLVLPAVGDSWASALIGGVERVAAQNSLDLVIIMVRAGESQGRSWVERLVDH-RSRG 126 + L + + + + +V R + +E+ + H Sbjct: 93 LIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAK 152 Query: 127 ALIAVVQPTA 136 L A + Sbjct: 153 MLPADLMTRR 162
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 65.6 bits (160), Expect = 1e-14 Identities = 36/164 (21%), Positives = 63/164 (38%), Gaps = 5/164 (3%) Query: 4 VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG 63 +++ DD A IR L L AG V ++ + + I D+V+ D+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 ATAALRA-DPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG 122 ++ PDL +LV++ + + A GA +L K D LI + Sbjct: 65 LLPRIKKARPDL---PVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 123 DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVL 166 + + GRSA E+ A L + +++ Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMI 165
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 45.6 bits (108), Expect = 6e-07 Identities = 40/254 (15%), Positives = 90/254 (35%), Gaps = 33/254 (12%) Query: 177 TELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIG---SVTPIL 233 T ++ FLV+ L ++ A + + V V+ + F+ +A G + + Sbjct: 343 TLFEAIMLVFLVMYLFLQNMRAT------LIPTIAVPVVLLGTFAILAAFGYSINTLTMF 396 Query: 234 AVMLGLAVGIDYCLFVLSRFRAELRSGRL-VQDAIGRATATAGSSVVFAGATVIIALVGL 292 ++L + + +D + V+ + +L ++A ++ + ++V + + + Sbjct: 397 GMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPM 456 Query: 293 TVVGI---PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWM----GRRALGRRERASTRSA 345 G + I A+A++VL++L L PAL + + + Sbjct: 457 AFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFN 516 Query: 346 GGSPRWTT------TWIGAVLRRPVIATFAVVGGLAVVALPLLG----------MQTSLV 389 I R ++ +V G+ V+ L L T + Sbjct: 517 TTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQ 576 Query: 390 IPGGEDPDSTQRAA 403 +P G + TQ+ Sbjct: 577 LPAGATQERTQKVL 590 Score = 42.9 bits (101), Expect = 4e-06 Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 25/188 (13%) Query: 498 STAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTV 557 + + L E +++ A + +V L L + R+ L+P IA + L LG+ Sbjct: 330 TPFVQLSIHEVVKTLFEAIM--LVFLVMYLFLQNMRATLIPTIA---VPVVL---LGTFA 381 Query: 558 AVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHR-HGTSPRE 616 + +G+ L++ +++ GL +D + +V + P+E Sbjct: 382 ILAAFGY---------SINTLTMFGMVLA---IGLLVDDAIVVVENVERVMMEDKLPPKE 429 Query: 617 AVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSS---LVGSIALALAVGVLADALLVRMIL 673 A Q +V A +++AVF A S + ++ + + ++LV +IL Sbjct: 430 ATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL-SVLVALIL 488 Query: 674 VPALLTLL 681 PAL L Sbjct: 489 TPALCATL 496 Score = 33.3 bits (76), Expect = 0.004 Identities = 33/178 (18%), Positives = 70/178 (39%), Gaps = 22/178 (12%) Query: 511 SALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLG-AALGSTVAVFQWGWLDPIV 569 + A VA+ + FL L L+ S+ +P+ +L + +G +A + Sbjct: 870 NQAPALVAISFVVVFLCLAALYESWSIPVS----VMLVVPLGIVGVLLAATLFN------ 919 Query: 570 QAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRH-GTSPREAV-RAGFQQSAP 627 Q N + ++ ++ GL+ + +V + G EA A + P Sbjct: 920 ---QKNDVYFMVGLLT---TIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRP 973 Query: 628 VVV-AAAAIMAAVFFGFALSPSSLVGSIALALAV-GVLADALLVRMILVPALLTLLGR 683 +++ + A I+ + + S + A+ + V G + A L+ + VP ++ R Sbjct: 974 ILMTSLAFILGVLPLAISNGAGSGAQN-AVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 48.3 bits (115), Expect = 3e-08 Identities = 63/291 (21%), Positives = 109/291 (37%), Gaps = 14/291 (4%) Query: 90 QLIEPEGKEAALGLIVGIGALFNLILGPIFGVLSDATRLRWGRRRPFLVFGLGVAALAAC 149 L+ A G+++ + AL P+ G LSD R+GRR P L+ L AA+ Sbjct: 34 DLVHSNDVTAHYGILLALYALMQFACAPVLGALSD----RFGRR-PVLLVSLAGAAVDYA 88 Query: 150 LIAIAPSVPLVLAGWIIAQVAASAISAALNPTLPERVPAEQRGKLGALSGVAASIAGVSA 209 ++A AP + ++ G I+A + + + A + + ++R + V+ Sbjct: 89 IMATAPFLWVLYIGRIVAGITGATGAVAGA-YIADITDGDERARHFGFMSACFGFGMVAG 147 Query: 210 TLVGSLLTG---DLVLLFLLPVAVLAVGVVLWLFVVPDAPAPAGAQRPIGAALRSLLFDP 266 ++G L+ G + L +L +R L S + Sbjct: 148 PVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWAR 207 Query: 267 RKHPDFAWVWIGKFCLQIGLAFFTTYQLYFLLDRLGFTAEEAGRQLAVVGGISLLATMLF 326 A + F +Q+ + F DR + A G LA G + LA + Sbjct: 208 GMTV-VAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMI 266 Query: 327 TIAGGTLSDRLRRRKPFIYLASAMIAAGMITAAFSSDFVIYAVAGALLAAG 377 T G ++ RL R+ + L G I AF++ + LLA+G Sbjct: 267 T---GPVAARLGERR-ALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG 313
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 32.0 bits (72), Expect = 0.005 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 14/245 (5%) Query: 109 PDIVQVEYRALPSLVVAGVVKDITDDVADAKGDVADNIWDLTTFDDRVYGVPQDIGPAMF 168 PDI+ + +G++ +IT D A + + WD ++ ++ P + Sbjct: 83 PDIIFWAHDRFGGYAQSGLLAEITPDKA-FQDKLYPFTWDAVRYNGKLIAYPIAVEALSL 141 Query: 169 TYRKDLLEQYGVEVPTTWAEYADAAEKIHTADPTVYISSFDPGEFQFFAAQAAQAGAEWW 228 Y KDLL P TW E +++ + + + F + AA G + Sbjct: 142 IYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTW-PLIAADGGYAFK 196 Query: 229 TNDG--DTWKVGIDSEESLATADFWQDLVERDLVKVEALVTPEWNAEINDGKVLSWAAAS 286 +G D VG+D+ + A F DL++ + + + A N G+ Sbjct: 197 YENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIA-EAAFNKGETAMTINGP 255 Query: 287 WVPSVINAVAPDTAGKWESAPLPQWTEGDASVPFIGGSAYFVPEKSSDSEAAAKFATWLS 346 W S I+ + + LP + +G S PF+G + + S + E A +F Sbjct: 256 WAWSNIDT----SKVNYGVTVLPTF-KGQPSKPFVGVLSAGINAASPNKELAKEFLENYL 310 Query: 347 TSDEG 351 +DEG Sbjct: 311 LTDEG 315
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 87.8 bits (217), Expect = 3e-23 Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 13/192 (6%) Query: 36 ESDAVATALPGRRAEFVTGRVLARRALAALGRRPGSIPVARDGAPVWPAGIVGSITHCVG 95 D + +A R+AE + GR+ A AL +G R P+WP G+ GSI+HC Sbjct: 35 HHDRLRSAGRKRKAEHLAGRIAAVHALREVGVRTVPGM-GDKRQPLWPDGLFGSISHCAT 93 Query: 96 LRACAVGRRDEHAGIGIDATPARPLPGGVLARVADLGSAPVAAGLDALRATGVEAPGSVL 155 + R+ IGID +A + ++ Sbjct: 94 TALAVISRQ----RIGIDIEKIMSQHTAT--ELAPSIIDSDERQILQASLLPFPLALTLA 147 Query: 156 FAAAEAVAKARTSAQGGWHGIDGAEIVLHPDGSFAVR-----ARRGPDFTGTGRWAVAGG 210 F+A E+V KA + G + A++ ++ A + T W Sbjct: 148 FSAKESVYKAFSDRV-TLPGFNSAKVTSLTATHISLHLLPAFAATMAERTVRTEWFQRDN 206 Query: 211 LALAGIALDEHW 222 + ++ Sbjct: 207 SVITLVSAITRV 218
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.5 bits (68), Expect = 0.005 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%) Query: 38 PGPAPAAPPAAATAAPSAPPTTAPSDPPTSAPTVVQGLGAVPTRVAIPA 86 P APP T P++PP +P ++ P V + + P Sbjct: 403 PSTTAEAPPLILTWTPASPP--GNQNPSSTTPVVPKPVPVYEGATLTPV 449
>PF06776#Invasion associated locus B Length = 214 Score = 27.2 bits (60), Expect = 0.048 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 1 MPRHRAAPDAPARPVPH---GRRAARRPVRRRRTLLVTAIAVTLALAGAGTAYAVFADRA 57 +P +A PA P RR ARR R AIA L+ + A A A R+ Sbjct: 21 VPALKAIQMGPAELSPMLASCRRLARRNGARLMLAGAMAIA--LSFGWSDRADAQGAVRS 78 Query: 58 T 58 Sbjct: 79 V 79
>cloacin#Cloacin signature. Length = 551 Score = 34.3 bits (78), Expect = 5e-04 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 15/81 (18%) Query: 183 GTGQDPDPSTGGGTGTGSGSGSG-SGGGSGSGTS------------PAGSAPAADAPRDL 229 G G GGG+G G+G G+G SGGGSG+G + PA S P A Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA-- 104 Query: 230 LPVTGRDIASALAGALLALLG 250 + ++ +++A+A + AL G Sbjct: 105 VSISAGALSAAIADIMAALKG 125
>INTIMIN#Intimin signature. Length = 939 Score = 38.5 bits (89), Expect = 2e-04 Identities = 75/408 (18%), Positives = 127/408 (31%), Gaps = 40/408 (9%) Query: 400 GLFLVGTSVTCTGTHVVTPAEAMSGTLVNTASARGVNTLLASVTSNSSSVTAQIVAPAPA 459 G S + + PA G+ V +AR + +SN+ +T +++ Sbjct: 497 GQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDR--NGNSSNNVLLTITVLSNGQV 554 Query: 460 LALTKTGTLTDSNGNGRADVGERIAYSFVAQNSG----NVSLYTVAVADPRVTGISPAST 515 + T + +AD E I Y+ + +G NV + V+ V + A+T Sbjct: 555 VDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANT 614 Query: 516 TLAPGASQTFTSAA--YTVTQADVDAATPIVNT-ATVSGKTFAGVAAPTASSSTSTPVSG 572 + A+ T S V A T +N A + + T+ +G Sbjct: 615 NGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANG 674 Query: 573 SAALTLTKGATLTGGSKAGSTVAYSFSIRNTGTVPLTGVALTDPLPGLSAVTYTWPGTAG 632 A+T T + V + T L+ G + VT T T G Sbjct: 675 QDAITYTVKVMKGDKPVSNQEVTF-----TTTLGKLSNSTEKTDTNGYAKVTLT-STTPG 728 Query: 633 TLAAGATATATASYTVRQADVDAGQIANTATVRGASSGGTQAQATATRTLTLDRTATLAF 692 + +A + DV A ++ T+ L T L + Sbjct: 729 K------SLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLP---TVWLQY 779 Query: 693 TKTATPGNVPAAGGVVTYAFRLQNTGSTTLTSVSIADPRAGVSALSYTWPGTAGTLAPGQ 752 N+ A+GG Y +R N ++ D +G L T++ Sbjct: 780 G----QVNLKASGGNGKYTWRSANPA------IASVDASSGQVTLKEK---GTTTISVIS 826 Query: 753 VVTATATYTATTADVAAGSIVNTATATATAPTGQVSGTATATVLAVAD 800 TATYT T + IV + T + L + Sbjct: 827 SDNQTATYTIATPN---SLIVPNMSKRVTYNDAVNTCKNFGGKLPSSQ 871
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 138 bits (350), Expect = 2e-38 Identities = 81/371 (21%), Positives = 147/371 (39%), Gaps = 69/371 (18%) Query: 2 ARAVGIDLGTTNSVVSVLEGG----EPTVIA-NAEGARTTPSVVAFTKDGEVLVGETAKR 56 + + IDLGT N+++ V G EP+V+A + A + SV A VG AK+ Sbjct: 10 SNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA--------VGHDAKQ 61 Query: 57 QNVTNVDRTISSVKRHMGTDWTVGIDDKKYTSQELSARILGKLKRDAEQYLGDSVTDAVI 116 I++++ G+ + ++++ + ++ ++ ++ Sbjct: 62 MLGRT-PGNIAAIR-----PMKDGVIADFFVTEKMLQHFIKQVHSNS---FMRPSPRVLV 112 Query: 117 TVPAYFNDAERQATKEAGEIAGLNVLRIINEPTAAALAYGLDRGKEDELILVFDLGGGTF 176 VP ER+A +E+ + AG + +I EP AAA+ GL E +V D+GGGT Sbjct: 113 CVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPV-SEATGSMVVDIGGGTT 171 Query: 177 DVSLLEVGKDDDFSTIQVRSTAGDNRLGGDDWDQRIVDHLVKRFKESTGVDVSNDKIAKQ 236 +V+++ + + R+GGD +D+ I++++ + + G Sbjct: 172 EVAVISLNG---------VVYSSSVRIGGDRFDEAIINYVRRNYGSLIG----------- 211 Query: 237 RLKEAAEQAKKELSSS----TSTSIQLPYLSLTENGPANLDETLTRAKFEELTNDL---- 288 + AE+ K E+ S+ I++ +L E P + E L L Sbjct: 212 --EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN-SNEILEALQEPLTGIV 268 Query: 289 ------LERTRKPFEDVIREAGVSVGDVAHVVLVGGSTRMPAVVDLVKKLTGGKEPNKGV 342 LE+ I E G +VL GG + + L+ + T G Sbjct: 269 SAVMVALEQCPPELASDISERG--------MVLTGGGALLRNLDRLLMEET-GIPVVVAE 319 Query: 343 NPDEVVAVGAA 353 +P VA G Sbjct: 320 DPLTCVARGGG 330
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 29.7 bits (66), Expect = 0.027 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 12/75 (16%) Query: 276 PEIVASEEEARRVVDASRHPTDEQLRA--------IALGWSSDLETD----LTGLDLDRP 323 PE A E R ++ P+DE+ + IA G SS ETD GL LD+P Sbjct: 419 PETQAKETLLSRDYLSTNEPSDEEFKNAMSVYINDIAEGLSSLPETDHRVVYRGLKLDKP 478 Query: 324 VDRGVFGEHVSHGTI 338 V E+ + G I Sbjct: 479 ALSDVLKEYTTIGNI 493
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.0 bits (119), Expect = 9e-10 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 2/96 (2%) Query: 19 RERRRMATTTEISEAALALFEQRGMAATTIHDIAQAAGVSDRTCFRYFPSKEESVLTLHP 78 ++ T I + AL LF Q+G+++T++ +IA+AAGV+ + +F K + + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 79 VFDAPLDAWLADV--DRGSAPLPQLEAVYERVLASL 112 + ++ + + PL L + VL S Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLEST 100
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 138 bits (348), Expect = 8e-38 Identities = 92/409 (22%), Positives = 186/409 (45%), Gaps = 20/409 (4%) Query: 50 LVVAAFVVILNETIMSVALPSLMADLDITTATAQWLTTGFMLTMAVVIPATGFILQRFST 109 L + +F +LNE +++V+LP + D + A+ W+ T FMLT ++ G + + Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 110 RQVFGAAMTLFSIGTLIAAIA-PGFGILLVGRIVQASGTAIMMPLLFTTVLNLVPAARRG 168 +++ + + G++I + F +L++ R +Q +G A L+ V +P RG Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138 Query: 169 RLMGVISIVIAVAPAIGPTVSGLILSSLSWRWMFWIVLPIALVALTLGLWKITNLTTPRK 228 + G+I ++A+ +GP + G+I + W ++ ++P+ + L K+ K Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPMITIITVPFLMKLLKKEVRIK 196 Query: 229 LPFDILSVVLSTLAFGGLIFGLSSLGESAEGDAPLPLWIPITVGVLALAAFITRQIALQR 288 FDI ++L ++ + +S + V VL+ F+ ++ Sbjct: 197 GHFDIKGIILMSVGIVFFMLFTTSY-----------SISFLIVSVLSFLIFVKHI---RK 242 Query: 289 QDRALMDLRTFRSRPFVVAIIMVSVSMMALFGSLIVLPLYLQNVLELGTLETG-LLLLPG 347 +D ++ PF++ ++ + + G + ++P +++V +L T E G +++ PG Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 348 GALMAILSPIVGRLFDRVGPRPLVIPGAIIVSIALWGMTTMLHEGTSIGWVIAVHLVLNA 407 + I I G L DR GP ++ G +S++ + L E TS I + VL Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTA-SFLLETTSWFMTIIIVFVL-G 360 Query: 408 GLAFMFTPLLTSALGSLPPRLYSHGSATVSTMQQLAGAAGTALFVTVLT 456 GL+F T + T SL + G + ++ L+ G A+ +L+ Sbjct: 361 GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 41.1 bits (96), Expect = 9e-07 Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 4 AGLDAATVTEAGAALADEIGLAGLSMGAVAERLGVKTPSLYKHV 47 A L+ +V +A L +E G+ GL+ +A++LG++ P+LY HV Sbjct: 2 ARLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHV 45
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.0 bits (158), Expect = 6e-15 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 15/191 (7%) Query: 49 GVRRRAEIVAAAVRVFGVRGYGAATIKEIADEVGVSPAAVLRYFR-KEELLTEVL-RQWD 106 R I+ A+R+F +G + ++ EIA GV+ A+ +F+ K +L +E+ Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 107 RQQPFVSEAAPGLPA---------LRAFVDLMRYHVEHRGFLELYLTFATETSDATHPAH 157 E P L ++ R +E+ + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA-VVQ 127 Query: 158 EYMRGRYARTIAQIRRRIGEAVALGQVPPMDDATLDYESACFLAILDGLEIQWIHNP-SL 216 + R + +I + + + +P + GL W+ P S Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAII--MRGYISGLMENWLFAPQSF 185 Query: 217 DLPALVGEYVE 227 DL +YV Sbjct: 186 DLKKEARDYVA 196
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 3e-12 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 2/101 (1%) Query: 7 DTRERLAAAALELFRERGFAETTVPEITARAGLTTRTFFRHFADKREVLFA--EEDELPA 64 +TR+ + AL LF ++G + T++ EI AG+T + HF DK ++ E E Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI 70 Query: 65 LVTRIIREASPDRSPLQVVEDGFPEVVASQFSEGRATLLAR 105 + +A PL V+ + V+ S +E R LL Sbjct: 71 GELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLME 111
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 90.1 bits (223), Expect = 2e-23 Identities = 55/202 (27%), Positives = 74/202 (36%), Gaps = 13/202 (6%) Query: 5 LITGCSTGLGRAFAVEALERGHDVVVTARDAANAQDLADTYPEHALA-----LDLDVTDP 59 ITG + G+G A A +G + A D + A A DV D Sbjct: 12 FITGAAQGIGEAVARTLASQGAHI--AAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 60 AQVSLAVDEATARFGGVDVLVNNAGYGYRAAVEEGDDEDVARLFDTQFHGSVRMIKAVLP 119 A + G +D+LVN AG + DE+ F G ++V Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 120 GMRERRSGTIVNLSSIGAARTGAGSGYYGAVKAAIEQMTMALRTELEPLGIVATVVAPGS 179 M +RRSG+IV + S A Y + KAA T L EL I +V+PGS Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 180 FRTDFSGRSLTQSSTVIDDYAE 201 TD Q S D+ Sbjct: 190 TETDM------QWSLWADENGA 205
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 25.2 bits (55), Expect = 0.044 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 9/48 (18%) Query: 26 SLGITFAMLGLVLMLTLDDTRVAGLPFIILGITFFVMSVRPKRARTRP 73 S+GI F ML T + F+I+ + F++ V+ R T P Sbjct: 208 SVGIVFFMLF---------TTSYSISFLIVSVLSFLIFVKHIRKVTDP 246
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 4e-19 Identities = 29/112 (25%), Positives = 58/112 (51%) Query: 25 RVFVVDEEAPITQLLSLALRMEGWDVRVFATGRAAIDAAVEAAPDAILLDMTLPDVSGVE 84 + V D++A I +L+ AL G+DVR+ + D ++ D+ +PD + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 85 VVGELRRAGVASPVLFLTGRDSLEDRLAAFGAGADDYVTKPFGLEEVVETLR 136 ++ +++A PVL ++ +++ + A GA DY+ KPF L E++ + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 40.8 bits (95), Expect = 9e-06 Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 17/89 (19%) Query: 346 ELTAADAGGPVIPGVPTPTPTTPSIDPAGTAPTPITKP------AAQHGDTLPVTGTDG- 398 EL AG P P ++ G AP TKP + LP TG Sbjct: 454 ELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGETAN 513 Query: 399 ----AAALGLGGLGTLLALVGAGALVARR 423 AAAL T++A G A+V R+ Sbjct: 514 PFFTAAAL------TVMATAGVAAVVKRK 536
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 29.7 bits (66), Expect = 0.010 Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 18/141 (12%) Query: 12 SRRVIAGAAVGLALALSAPLAASAHVELDASSTAPATLSVLTFAVGHGCEGSATTSLAIR 71 SR++ A +G L + AP SAH D + + + F+ HG + Sbjct: 9 SRKLFASILIGALLGIGAP--PSAHAGADDVVDSSKSFVMENFSSYHGTK---------- 56 Query: 72 FPTDVQAVKPTLAPGWSVAEQEAADATTVTYTADTPLPDALRATVQVEALLPVDGAAGDV 131 P V +++ + S + D Y+ D DA +V E P+ G AG V Sbjct: 57 -PGYVDSIQKGIQKPKSGTQGNYDDDWKGFYSTDNKY-DAAGYSVDNEN--PLSGKAGGV 112 Query: 132 --VTFPTLQTCVAGSTDWAET 150 VT+P L +A D AET Sbjct: 113 VKVTYPGLTKVLALKVDNAET 133
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 139 bits (352), Expect = 2e-38 Identities = 83/397 (20%), Positives = 162/397 (40%), Gaps = 16/397 (4%) Query: 25 FMAALDSLVMTFALPIIKQDLDATVEQLQWFVNSYSVVFTAFMLPVAALGDRIGRRRVFL 84 F + L+ +V+ +LP I D + W ++ + F+ L D++G +R+ L Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 85 AGVALFTLASMGAALSTSS-DMLIAMRALQGLGAAGIVPLSLALVSASTTPKVRPIAIGV 143 G+ + S+ + S +LI R +QG GAA L + +V+ + R A G+ Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 144 WGGVNGLGIAAGPIIGGAVVEGFTWPGIFWLNVP-IGVVTIALVALALRESKGTGLGFDG 202 G + +G GP IGG + W + L +P I ++T+ + L++ FD Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 203 AGSVLGIVFTLPLIWAVVEGEERGWSAPEIIGAFAVSAAGLAAFIWHEHRSPRAFLPLRF 262 G +L V + + I VS F+ H + F+ Sbjct: 202 KGIILMSVGIVFFMLFTTSYS---------ISFLIVSVLSFLIFVKHIRKVTDPFVDPGL 252 Query: 263 FRERAFALANVGGLLFSAGVFGAIFLLSQFLQVSMGYGALEAGLRAA-PWTLAPMVVAPL 321 + F + + G + V G + ++ ++ E G P T++ ++ + Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312 Query: 322 SGFIVQRFGVKPVLITGLALQAGAILVIASVVEAQTEYGTVVVPMVVAGIGMGLTLAPLA 381 G +V R G VL G+ + + L + ++E + + T+++ V+ G+ T+ ++ Sbjct: 313 GGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTV--IS 370 Query: 382 NAVLTGRRDSEHGIASSVNSTLRQLGMAVGIALATAI 418 V + + E G S+ + L GIA+ + Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 29.4 bits (65), Expect = 0.030 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 4 HETGDAARAPEPLASVVDPARSVPLAPDPRSRGTTPDHVRRSNLATVLQIVHETGPASRS 63 H G R E L S +DP R+ PL P R T+ H AT V GP +R+ Sbjct: 140 HAPGTPVR--EGLRSHLDP-RTPPLPPRERPH-TSGHHGAGEARATAPSTVSPYGPEARA 195 Query: 64 ELTRETGLNRSTIA 77 EL+ R+T+A Sbjct: 196 ELSSRLTTLRNTLA 209
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.8 bits (64), Expect = 0.041 Identities = 7/27 (25%), Positives = 16/27 (59%) Query: 18 ADRAVPGVRGALLALAAGVAAAALGLL 44 D ++ + L ++++G++AAA L Sbjct: 364 IDASLTTISTVLASVSSGISAAATTSL 390
>PF07299#Fibronectin-binding protein (FBP) Length = 219 Score = 36.0 bits (83), Expect = 3e-05 Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 25/110 (22%) Query: 34 AWDRLD-----FLGWRDPKAPQRGIVVAPVGDELIGVLLQQSATAPRS-RAQCTWCQ--- 84 + LD +L W D + ++ I+ ++ +G+ Q + ++ C+ C Sbjct: 113 DMEELDMKELSYLSWIDKGSSRKFIIAKNDKNKFVGL---QGTFQSLNKKSICSLCHGHE 169 Query: 85 DVRLPNPVVFYGARRAGAAG---RNGNTVGTLVCTD-FECNANVRKPRPI 130 +V + F + G + GN +C D CN N++ + Sbjct: 170 EVGM-----FLVEIKGDIPGTFVKKGN----YICKDGVACNQNMKSLDKL 210
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.0 bits (88), Expect = 1e-05 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 197 RLALVGSWGGLFAV---ATRPEARRRGLSRAAMAAAVDAGLDRGITALWLQVVAENDGAR 253 R+ + +W G + A + R++G+ A + A++ + L L+ N A Sbjct: 79 RIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISAC 138 Query: 254 ALYGGLGF 261 Y F Sbjct: 139 HFYAKHHF 146
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 58.5 bits (141), Expect = 1e-10 Identities = 25/65 (38%), Positives = 39/65 (60%) Query: 13 SLRAQVARALRLDPADVGLDDDLVDLGLESTALIRLAGRWRRDGLAADFSRLAADPTIRV 72 ++R Q+A L+ P D+ +DL+D GL+S ++ L +WRR+G F LA PTI Sbjct: 234 NIRKQIAELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEE 293 Query: 73 WARML 77 W ++L Sbjct: 294 WQKLL 298
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 96.6 bits (240), Expect = 2e-26 Identities = 54/222 (24%), Positives = 77/222 (34%), Gaps = 32/222 (14%) Query: 24 MHPAEAGAVARAVPSRRREFAATRACARTALAALVAEAARGGGASRAAADAPGSSPVAIP 83 + + A R+ E A R A AL + G V Sbjct: 31 LWLPHHDRLRSAGRKRKAEHLAGRIAAVHALREV------------------GVRTVPGM 72 Query: 84 KGRGGDPVWPRGVVGSLTHCAGYRAAVVAGIDALRTIGIDAEPHAPLPREARDIVGLAGE 143 G P+WP G+ GS++HCA AV+ + + IGID E A ++ + Sbjct: 73 -GDKRQPLWPDGLFGSISHCATTALAVI----SRQRIGIDIEKIMSQH-TATELAPSIID 126 Query: 144 LHPHPPLGAG----VHADCVLFSAKESVGKAHFARYREWLGFADLHVTLHPDGAFTARRS 199 L A A + FSAKESV KA F+ GF VT + Sbjct: 127 SDERQILQASLLPFPLALTLAFSAKESVYKA-FSDRVTLPGFNSAKVTSLTATHISLHLL 185 Query: 200 AP--GPIPFPAYRGGWCVTEGIVLTCAWLAVPRIPSAVARPA 239 + R W + V+T A+ R+P + PA Sbjct: 186 PAFAATMAERTVRTEWFQRDNSVIT-LVSAITRVPHDRSAPA 226
>cloacin#Cloacin signature. Length = 551 Score = 33.5 bits (76), Expect = 0.002 Identities = 18/40 (45%), Positives = 21/40 (52%) Query: 564 ASLGSVSSSMHGTYSGSSSSGGSTGGTTSGGGGGGGGGGG 603 AS GS SS + + G S SG GG + G GGG G G Sbjct: 33 ASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSG 72 Score = 32.4 bits (73), Expect = 0.006 Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 9/61 (14%) Query: 544 ARDRPGWYAGQTPFSPAVFAASLGSVSSSMHGTYSGSSSSGGSTGGTTSGGGGGGGGGGG 603 A D GW + P+ G S S GS G G + GG G GG Sbjct: 33 ASDGSGWSSENNPW---------GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Query: 604 V 604 V Sbjct: 84 V 84
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 33.6 bits (77), Expect = 0.001 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 4/92 (4%) Query: 183 PIGSIVKLYVLGALVQAVEEGRIGWDDPLTVT-DDVRSLPSGELQDAPTGTVVSVRDTAE 241 P+ S K+ + GA++ V+ G + + D+ + + + ++V + Sbjct: 63 PMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDL--VDYSPVSEKHLADGMTVGELCA 120 Query: 242 KMIAISDNTATDMLIQAV-GREAVEAALVDLG 272 I +SDN+A ++L+ V G + A L +G Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIG 152
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.8 bits (77), Expect = 1e-04 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 9/76 (11%) Query: 72 VGVGSAWVALDDPNGRPDTAFLFELLVDPSRRGCGYGRALLAAVEEATRAAGAPALALNV 131 + + S W NG A + ++ V R G G ALL E + L L Sbjct: 80 IKIRSNW------NGY---ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLET 130 Query: 132 FGANRVAIALYASAGY 147 N A YA + Sbjct: 131 QDINISACHFYAKHHF 146
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 58.3 bits (141), Expect = 9e-12 Identities = 78/366 (21%), Positives = 125/366 (34%), Gaps = 97/366 (26%) Query: 8 RALVLGGTGAIGGATAERLARDGWSV---DV--TGRDPLAMPARLTDL---GVRFHALDR 59 + LV G G IG ++RL G V D D ARL L G +FH +D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 60 ADACGIERLTGDG-VDLLVDLVAFTAADVQA------------------LLPVMRASG-- 98 AD G+ L G + + V+ +L R + Sbjct: 62 ADREGMTDLFASGHFERVFISPH--RLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 99 SVVVASSRAVHVDDAGRHVNGDEPPRFPVPIPEDNPTLPPAAPGTDPFTREGYAPSKVAV 158 ++ ASS +V+ + +P D+ P + YA +K A Sbjct: 120 HLLYASSSSVYGLNR------------KMPFSTDDSVDHPVSL---------YAATKKAN 158 Query: 159 ERAALDS----GLPVTVIRPSKVHGRWAR-NARTRAVVERMLAGADTIELADRGASVDHL 213 E A GLP T +R V+G W R + + ML G +I++ + G Sbjct: 159 ELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEG-KSIDVYNYGKMKRDF 217 Query: 214 TAAANAAALVARVADVPGA-------------------RILHSADPDPLTAAEIVAVIAE 254 T + A + R+ DV R+ + + P+ + + + + Sbjct: 218 TYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALED 277 Query: 255 ELGWRGRI--VPLEPGVAGGAHPWAAAHPIVLDTRASL-----ALGYAPVGPGAVLLRAE 307 LG + +PL+PG VL+T A +G+ P ++ Sbjct: 278 ALGIEAKKNMLPLQPG-------------DVLETSADTKALYEVIGFTPETTVKDGVKNF 324 Query: 308 VAWIRD 313 V W RD Sbjct: 325 VNWYRD 330
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 7e-19 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 2/138 (1%) Query: 1 MDSGRVALVIEDDGDIRQLLEVVLRQGGFEVHSAGTATEGVRLAEEVSPDVITLDVGLPD 60 M + LV +DD IR +L L + G++V A R D++ DV +PD Sbjct: 1 MTGATI-LVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 FDGFEAARRIR-LVSDAYIVMLTAQGEEVDTLLGLEAGADDYIVKPFRPRELRARISAMM 119 + F+ RI+ D +++++AQ + + E GA DY+ KPF EL I + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 120 RRPRGGGDATATPAAGIP 137 P+ + Sbjct: 120 AEPKRRPSKLEDDSQDGM 137
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 31.3 bits (70), Expect = 0.002 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 13/110 (11%) Query: 89 TLVSMLVAAVVGGS---IAAMGLGLIFVTDACDVDAYV----CRDSLFTIGYGIAVAGPL 141 T+VS++ A GG+ +AA+GL ++ V D V A + +L I V PL Sbjct: 326 TIVSVVAAVFTGGASLALAAVGLAVM-VADEI-VKAATGVSFIQQALNPIME--HVLKPL 381 Query: 142 F-LTGIAVIVALVGMIRGRTRPWLVLLIGVGASLAAYVLGAVLVLVAVPG 190 L G A+ AL G+ + + I VGA +AA + AV+V+VAV G Sbjct: 382 MELIGKAITKALEGLGVDKKTAEMAGSI-VGAIVAAIAMVAVIVVVAVVG 430
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 29.5 bits (66), Expect = 0.007 Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 151 LALTEGAVRTLVRQAGDEVPGVLIGRCTLDGEVTRAGEPVRVALTMSVVWGDPLPELAQ 209 L LT+G+V L AG+ + ++ G GEV + V +T + + + L++ Sbjct: 79 LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.2 bits (73), Expect = 5e-04 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Query: 97 MALVPSARGRGLGRALLVALVAAVRASGAPAVSLSVEDGNDRARALYDSLGFVAVGREGG 156 +A+ R +G+G ALL + + + + L +D N A Y F G Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF----IIGA 150 Query: 157 SDVLLLR 163 D +L Sbjct: 151 VDTMLYS 157
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 40.5 bits (94), Expect = 3e-05 Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 3/79 (3%) Query: 217 AAAAAVPVPTPSASPTPAPTPVPDPDPTPAPGPTPAPDPSPAPAPGRVATGVTVTAPDGT 276 +A A P P SP P P P+ P P P PDP P G T PD Sbjct: 319 SAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSP 378 Query: 277 RVIDGQPRVDGLDRSATAD 295 V D R +G R + Sbjct: 379 AVPD---RPNGRHRKERKE 394 Score = 35.5 bits (81), Expect = 0.001 Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 6/95 (6%) Query: 224 VPTPSASPTPAPTPVPDPDPTPAPGPTPAPDPSPAPAPGRVATGVTVTAPDGTRVIDGQP 283 +P P +P A P P P +P PA +P+P PG PD D P Sbjct: 310 IPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPN----PEPDPDLNPDANP 365 Query: 284 RVDGLDRSATADSLTASDGSPEHAASVHVETGADG 318 DG + T A P + G DG Sbjct: 366 DTDG--QPGTRPDSPAVPDRPNGRHRKERKEGEDG 398 Score = 34.3 bits (78), Expect = 0.002 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 6/82 (7%) Query: 212 GSVTCAAAAAVPVPTPSASPTPAPTPVPDPDPTPAPGPTPAPDPSPAP----APGRVATG 267 GS A +P +P+ +P P P +P P P P P +P P PG Sbjct: 318 GSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDS 377 Query: 268 VTVTAPDGTRVIDGQPRVDGLD 289 V PD + R +G D Sbjct: 378 PAV--PDRPNGRHRKERKEGED 397
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 47.9 bits (114), Expect = 6e-08 Identities = 43/195 (22%), Positives = 68/195 (34%), Gaps = 31/195 (15%) Query: 243 VDDVPAEDRGSGATIAIVAAYDDPDTQADTDTYSLA---VGEPAFTAGQYRDHPSASPRT 299 V + RG G +A++ DT D D L +G FT D Sbjct: 31 APAVWNQTRGRGVKVAVL------DTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYN 84 Query: 300 G---ICGGPTAWTDEQHLDVQAVHAMAPDATVS----YWGADDCTSTSLYTRILDAAEDG 352 G G A T+ ++ V +AP+A + + I A E Sbjct: 85 GHGTHVAGTIAATENEN----GVVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQK 140 Query: 353 PDVISLSFGAMEGLDTADDRELLNRVLVEAASRDVSVFASTGNDGDYSGVGDHGGNATVA 412 D+IS+S G E + L+ + +A + + V + GN+GD + Sbjct: 141 VDIISMSLGGPEDVPE------LHEAVKKAVASQILVMCAAGNEGDG-----DDRTDELG 189 Query: 413 SPASSPYVTAVGATS 427 P V +VGA + Sbjct: 190 YPGCYNEVISVGAIN 204
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 49.6 bits (118), Expect = 1e-09 Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 13/208 (6%) Query: 1 MNQRQAAVSRARREIMEAAGAQFAAHGYEGTSFSRVAEAMGKPKSAIGYHLFASKESLAG 60 + + R+ I++ A F+ G TS +A+A G + AI Y F K L Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAI-YWHFKDKSDLFS 60 Query: 61 AVVEDQEDRWLRIEAALDRP------GALHELIVFLLTGASTVEVCPVAAGAIRLLQDMP 114 + E E +E L E+++ +L T E + I + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 115 RLGLAVERR-----FDVWRFTREHLEAELAVRDIRAG-DLDAVVDVLLSATFGVLSYRSP 168 V++ + + + L+ + + + A ++ G++ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 169 RLAEHDSAERLRSLWIPLLVGLGIDDAD 196 D + R LL + Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTL 208
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 40.1 bits (93), Expect = 1e-04 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 12/103 (11%) Query: 1313 SLRLTGLVSFPETGQYTFRTTSDDGVRVWLDDVLIIDQWTAQLPTDSTAQAISVTAGEAR 1372 S +G + ++ +YTF T++D+ V +W+DD +I++ S + I + G Sbjct: 91 SAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQEVINK-------ASNSNKIRLEKGRLY 143 Query: 1373 RIRIEYFE---VDLSAMLQLKWATPSQAGFTIVPGSSLR-PDY 1411 +I+I+Y + +L W SQ ++ +L+ P+ Sbjct: 144 QIKIQYQRENPTEKGLDFKLYWTD-SQNKKEVISSDNLQLPEL 185
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 39.1 bits (91), Expect = 3e-05 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 5/115 (4%) Query: 563 AIVAGALGFRIAHPLAMYGTMVLASITFAAIILALNVLLGSVGQ----FLGLVLMVVQLV 618 +VA ALG+ +Y V+A A L + V + F +++ L Sbjct: 133 GVVAAALGY-TQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILF 191 Query: 619 TAGGTFPWQTLPGPLAALHHVLPMSFAVDALRQLMYGGDLGQAAQDAGVLALWLV 673 +G FP LP LP+S ++D +R +M G + Q G L +++V Sbjct: 192 LSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIV 246
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 49.6 bits (118), Expect = 2e-09 Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 16/168 (9%) Query: 7 ARAPRKDAATNRQALVDAAVVALDRDP--DASLETIAAAAGLSRRAVYGHFATRDDLVRE 64 AR +++A RQ ++D A+ + SL IA AAG++R A+Y HF + DL E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 65 VLQRGARRVVEALAGIAHDDSRIHIALIGARLWAEVEQVRVMARV--AVRGPHAREVGAE 122 + + + E ++++ L +E R + + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 123 LAPLRAELQR------------VVERGIAAGELRGDIPAPTLARLIEG 158 + + QR ++ I A L D+ A ++ G Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRG 169
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.5 bits (66), Expect = 0.036 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 10/113 (8%) Query: 18 NTPHADPAGIEAALVASPTAASDAASLLAPSPSGGSSIASASDATPDTASLGTGPLSLVA 77 N P+ D G V+ +A A+ +L+ + + + A+A L T ++ Sbjct: 231 NLPNLDNIGAGLDTVSGILSAISASFILSNADADTRTKAAAG------VELTT---KVLG 281 Query: 78 GAGAAVMGMAADSRAAAAATTAMPAATDAVAAPVDTATAPAPAAATTEPFLRA 130 G + RAA +T+ AA +A+ V A +P + + F RA Sbjct: 282 NVGKGISQYIIAQRAAQGLSTSAAAAG-LIASAVTLAISPLSFLSIADKFKRA 333
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 30.5 bits (68), Expect = 0.032 Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 28/139 (20%) Query: 281 LGRLDGMAGVP------SIVETTEVDGHRYLATTRLDGDMLWQWQGKVNPLIRPGSTADE 334 L + GMA VP + EVDG R T R D W+ QGK+N G+ Sbjct: 193 LANVHGMAVVPYGNRKEEALLMDEVDGWRCSDTLRTLADS-WK-QGKINSEAYWGTIK-- 248 Query: 335 RAEFARRAMRLTRSVERLVAEMHRRGVTHGDLHPGNIL-ATDDDEARLIDFEV-ARSGTD 392 A R + +T + + GV H D+ PGN++ E +ID + +RSG Sbjct: 249 --FIAHRLLDVTN-------HLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQ 299 Query: 393 A-------AAPRRAMGGLG 404 AP +G LG Sbjct: 300 PKGFTESFKAPELGVGNLG 318
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.9 bits (197), Expect = 1e-19 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 1/127 (0%) Query: 5 ARVLVVEDDAAIRAAVVSTLTAERFVVRGLASGVDLEEEVKGFLPDLVVLDWMLPGPSGI 64 A +LV +DDAAIR + L+ + VR ++ L + DLVV D ++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 65 QLAERIR-RWSDASVIMLTARDAVEDRLRGFGQGVDDYIVKPFALAELVARVGAVLRRRG 123 L RI+ D V++++A++ ++ +G DY+ KPF L EL+ +G L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 124 RLASVVE 130 R S +E Sbjct: 124 RRPSKLE 130
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.7 bits (74), Expect = 0.001 Identities = 11/60 (18%), Positives = 14/60 (23%), Gaps = 1/60 (1%) Query: 156 PATPPTPPTNADGTPATPPAPPADGCAPPAPPVGADGKAPTPPAGPAAPATTPGSSEGST 215 A + TP P A AP G P P + E + Sbjct: 455 LAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETK-RQLPSTGETAN 513
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.1 bits (96), Expect = 4e-07 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 90 ITPDARGRAAGVADMLLDAVIAWARDRPNAQALRLEVHEDNPRARAYYERRGFVLTG 146 + D R + GV LL I WA++ L LE + N A +Y + F++ Sbjct: 97 VAKDYRKK--GVGTALLHKAIEWAKENH-FCGLMLETQDINISACHFYAKHHFIIGA 150
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 28.5 bits (63), Expect = 0.038 Identities = 33/108 (30%), Positives = 41/108 (37%), Gaps = 2/108 (1%) Query: 211 ITDATKAVATSQAALPEDACTAVYALPEYAGSTANLAQVALDSDNVFGDDGGELQLGTVT 270 I D + Q+ PED + L + TA A A + +V G L G +T Sbjct: 178 IVDGGLHIGALQSLQPEDLPPSRVVLRD-TNVTAVPASGAPAAVSVLGASELTLDGGHIT 236 Query: 271 GDATAGYRVALTARVDTA-TTPTAGSAPSGGGGGGMGGPAGTPPGGDR 317 G AG A V T G AP+GG G P G PGG Sbjct: 237 GGRAAGVAAMQGAVVHLQRATIRRGDAPAGGAVPGGAVPGGAVPGGFG 284
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 35.0 bits (80), Expect = 9e-04 Identities = 18/91 (19%), Positives = 28/91 (30%) Query: 270 AVRPLTAPVAAPAPTPTPAPAPTTPAPGAGSGSGSSDAEQGVSLGDARTGAGSAPVGSTA 329 AV+P PV P P P P P P AP + + + Sbjct: 65 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESR 124 Query: 330 YGVPSDAVFVAPTGSNGGSGSKSSPYATIQR 360 P + A S+ + + S P ++ Sbjct: 125 PASPFENTAPARPTSSTATAATSKPVTSVAS 155
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 37.3 bits (86), Expect = 2e-04 Identities = 20/121 (16%), Positives = 32/121 (26%), Gaps = 8/121 (6%) Query: 242 VWSYLSSSSPTQAVAFDDVTVRPLTTAASPMPTPTPTPTPTP----TPTPTPTAPAPTSS 297 + P A V P P P P P P P P AP Sbjct: 35 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVI 94 Query: 298 DPEQTVPRGDARPG----TGSGSAAVGTTTYPAPADGVYVSPTGSNTGAGTKASPYASIQ 353 + + P+ +P + +P + + S+T + P S+ Sbjct: 95 EKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVA 154 Query: 354 K 354 Sbjct: 155 S 155
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 101 bits (253), Expect = 2e-23 Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 8/143 (5%) Query: 1093 QDVTVKAAPANVAPTAVVTATATDLTA---KLDGSASTDADGTVASYAWDFGDGSTGTGP 1149 T N P AV+ + ++ + DG+ S D DG + +Y WDFGDG Sbjct: 762 NTDTNTDVHVNKEPKAVIKSDSSVIVEEEINFDGTESKDEDGEIKAYEWDFGDGEKSNEA 821 Query: 1150 TPTHAYAAGGTYTVALTVTDDKGLTGTASTQVTVVA----PPVN-REPTAVIASTTADLV 1204 TH Y G Y V LTVTD+ G T S ++ VV +N EP Sbjct: 822 KATHKYNKTGEYEVKLTVTDNNGGINTESKKIKVVEDKPVEVINESEPNNDFEKANQIAK 881 Query: 1205 ANLDGRASSDPDGTIASWAWEFG 1227 +N+ + + + + ++ Sbjct: 882 SNMLVKGTLSEEDYSDKYYFDVA 904 Score = 92.1 bits (228), Expect = 2e-20 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 4/133 (3%) Query: 1572 NQAPTAAFTSTANGLTA---SFDGSGSTDADGTVASYAWAFGDGTTGTGRTATHAYAAAG 1628 N+ P A S ++ + +FDG+ S D DG + +Y W FGDG ATH Y G Sbjct: 772 NKEPKAVIKSDSSVIVEEEINFDGTESKDEDGEIKAYEWDFGDGEKSNEAKATHKYNKTG 831 Query: 1629 TYAVSLTVTDDKGLVSAKKDGTVQVS-APVVTPANQAPTAAFTSTAKDLTASFDASTSTD 1687 Y V LTVTD+ G ++ + V PV P F + ++ + Sbjct: 832 EYEVKLTVTDNNGGINTESKKIKVVEDKPVEVINESEPNNDFEKANQIAKSNMLVKGTLS 891 Query: 1688 ADGTVASYAWAFG 1700 + Y + Sbjct: 892 EEDYSDKYYFDVA 904 Score = 90.9 bits (225), Expect = 4e-20 Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 8/142 (5%) Query: 1180 QVTVVAPPVNREPTAVIASTTADLVA---NLDGRASSDPDGTIASWAWEFGDGTTGAGAS 1236 T VN+EP AVI S ++ +V N DG S D DG I ++ W+FGDG A Sbjct: 763 TDTNTDVHVNKEPKAVIKSDSSVIVEEEINFDGTESKDEDGEIKAYEWDFGDGEKSNEAK 822 Query: 1237 IAHPYAKAGTYTVALTVTDDKGATGRTTASVTVTA----PPVNQA-PVAAFTSTVANLVA 1291 H Y K G Y V LTVTD+ G + + V +N++ P F + Sbjct: 823 ATHKYNKTGEYEVKLTVTDNNGGINTESKKIKVVEDKPVEVINESEPNNDFEKANQIAKS 882 Query: 1292 SLDASTSSDPDGTVASYAWAFG 1313 ++ + + Y + Sbjct: 883 NMLVKGTLSEEDYSDKYYFDVA 904 Score = 83.6 bits (206), Expect = 6e-18 Identities = 49/220 (22%), Positives = 73/220 (33%), Gaps = 39/220 (17%) Query: 1012 TGRVPNQAPKAAFTQTADFLTA---SFDATGSTDGDGTVTGYAWDFGDGVQASGATQSHT 1068 T N+ PKA + + +FD T S D DG + Y WDFGDG +++ A +H Sbjct: 767 TDVHVNKEPKAVIKSDSSVIVEEEINFDGTESKDEDGEIKAYEWDFGDGEKSNEAKATHK 826 Query: 1069 YAAAGTYPVVLTVTDDRGTTNRTQQDVT-VKAAPANV----APTAVVTATATDLTAKLDG 1123 Y G Y V LTVTD+ G N + + V+ P V P + + Sbjct: 827 YNKTGEYEVKLTVTDNNGGINTESKKIKVVEDKPVEVINESEPNNDFEKANQIAKSNMLV 886 Query: 1124 SASTDADGTVASYAWDF-------------------------GDGST-GTGPTPTHAYAA 1157 + + Y +D GD + T Sbjct: 887 KGTLSEEDYSDKYYFDVAKKGNVKITLNNLNSVGITWTLYKEGDLNNYVLYATGNDGTVL 946 Query: 1158 GGTYTVA-----LTVTDDKGLTGTASTQVTVVAPPVNREP 1192 G T+ L+V +GT + V +E Sbjct: 947 KGEKTLEPGRYYLSVYTYDNQSGTYTVNVKGNLKNEVKET 986 Score = 82.1 bits (202), Expect = 2e-17 Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 14/127 (11%) Query: 1268 TVTAPPVNQAPVAAFTSTVANLVA---SLDASTSSDPDGTVASYAWAFGDGTTGTGRTTT 1324 T T VN+ P A S + +V + D + S D DG + +Y W FGDG T Sbjct: 765 TNTDVHVNKEPKAVIKSDSSVIVEEEINFDGTESKDEDGEIKAYEWDFGDGEKSNEAKAT 824 Query: 1325 HAYAAAGTFAVSLTVTDDKGLATTTTSQVTV-----------QAPASNVLAQDSFGRAVA 1373 H Y G + V LTVTD+ G T + ++ V P ++ + ++ Sbjct: 825 HKYNKTGEYEVKLTVTDNNGGINTESKKIKVVEDKPVEVINESEPNNDFEKANQIAKSNM 884 Query: 1374 TGWGTAD 1380 GT Sbjct: 885 LVKGTLS 891 Score = 78.6 bits (193), Expect = 2e-16 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 1662 NQAPTAAFTSTAKDLTA---SFDASTSTDADGTVASYAWAFGDGTTGTGKTATHAYAAAG 1718 N+ P A S + + +FD + S D DG + +Y W FGDG ATH Y G Sbjct: 772 NKEPKAVIKSDSSVIVEEEINFDGTESKDEDGEIKAYEWDFGDGEKSNEAKATHKYNKTG 831 Query: 1719 TYAVSLTVTDDKGLAS 1734 Y V LTVTD+ G + Sbjct: 832 EYEVKLTVTDNNGGIN 847
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 32.2 bits (73), Expect = 8e-04 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Query: 84 KASA---LAGALLTGITGGVLAFVLARPVLPGASSVGLAVAGTVGAVVLL 130 KA+A L +L + G+ +++A+ G S+ A AG + + V L Sbjct: 268 KAAAGVELTTKVLGNVGKGISQYIIAQRAAQGLSTSA-AAAGLIASAVTL 316
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.7 bits (85), Expect = 4e-04 Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 16/154 (10%) Query: 515 VIGQEEAISALSKTIRRTRAGLKDPRRPSGSFIFAGPTGVGKTELAKALAEFLFDDEDAL 574 ++G+ A+ + + + R + + G +G GK +A+AL ++ Sbjct: 139 LVGRSAAMQEIYRVLARLMQT-------DLTLMITGESGTGKELVARALHDYGKRRNGPF 191 Query: 575 ISLDMSEYGEKHTVSRLFGAPPG-FVGFEEGGQLTEKVRRKPFSVVLFDEIEKAHPDIFN 633 ++++M+ S LFG G F G + + + + DEI D Sbjct: 192 VAINMAAIPRDLIESELFGHEKGAFTGAQTRST--GRFEQAEGGTLFLDEIGDMPMDAQT 249 Query: 634 SLLQILEEG---RLTDGQGRVVDFKNTVIIMTTN 664 LL++L++G + D + I+ TN Sbjct: 250 RLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN 280 Score = 31.0 bits (70), Expect = 0.021 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 8/60 (13%) Query: 173 RNLTQAARDGKLDPVIGREKEIERVMQILSRRSKNN-PVLI-GEPGVGKTAVVEGLAQAI 230 L ++DG P++GR ++ + ++L+R + + ++I GE G GK V A+A+ Sbjct: 127 SKLEDDSQDG--MPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV----ARAL 180
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 99.1 bits (247), Expect = 4e-26 Identities = 70/338 (20%), Positives = 117/338 (34%), Gaps = 78/338 (23%) Query: 1 MRIAVTGGSGKLGRHVVADLRAHGHEVTNID----------------QVGERGSGYVRVD 44 M+ VTG +G +G HV L GH+V ID + + G + ++D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 45 TTDYGQVVDALFGVQDLHDGFDAVVHLAAIPA--PAILSDVATFHNNMLTSFNVFQAARR 102 D + + LF F+ V A ++ + A +N+ N+ + R Sbjct: 61 LADR-EGMTDLFASG----HFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH 115 Query: 103 AGIRKIVYASSETVLGLPFDVPPPYIPVDEEYPA-QPNSTYSLVKHLEEQMAI---ELCR 158 I+ ++YASS +V GL +P + P S Y+ K E MA L Sbjct: 116 NKIQHLLYASSSSVYGL-----NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY- 169 Query: 159 WDPELQVTALRFSNVM---------------DVDDYEEFPGFDDDALARKWNLWGYIDGR 203 L T LRF V + + + ++ + R + YID Sbjct: 170 ---GLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFT---YID-- 221 Query: 204 DGAQAVRKALEHDGTGFDRFIVANADTVMSRSSAEL----------------AAEVFPGV 247 D A+A+ + + ++ V S + + A E G+ Sbjct: 222 DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI 281 Query: 248 EVTKELGE------HETLLSIDKARRILGYEPEHTWRD 279 E K + ET ++G+ PE T +D Sbjct: 282 EAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKD 319
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 62.9 bits (153), Expect = 7e-13 Identities = 73/358 (20%), Positives = 134/358 (37%), Gaps = 21/358 (5%) Query: 17 RSVFAVAFACVIAFMGIGLVDPILPAIASSLDATATEAE---LLFTSYLLVTGLAMLVTS 73 R + + + +GIGL+ P+LP + L + +L Y L+ V Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 74 WISSRIGAKRTLLIGLAIIVVFAAAAGLSQDVEQVIGFRAGWGLGNALFISTALATIVGS 133 +S R G + LL+ LA V A + + + R G+ A + A A I Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADI 123 Query: 134 ASGGT-ASAIMLYEAALGLGIAVGPLLGGLLGSWSWRGPFFGTATLMAVGFVAILALLGK 192 G A A G G+ GP+LGGL+G +S PFF A L + F+ LL + Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 193 DDAP-RAPMRLSAP--------LRALRT--PALAVLAAAALFYNIGFFVLLAYTPFPLGF 241 R P+R A R + +AV L + + + + + Sbjct: 184 SHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHW 243 Query: 242 DAIGLGLTFFGWGVGLAITSVLVAPLLTRRMARTSVLRLVLPLLAADLAAAGLVVRSSVG 301 DA +G++ +G+ ++ ++ + R+ L L + R + Sbjct: 244 DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMA 303 Query: 302 L--VVCVIVGGLLLGVLNTVLTECVMEATDHPRSVASSAYSSVRFLGGAIAPPAATEL 357 +V + GG+ + L +L+ + + + + +++ L + P T + Sbjct: 304 FPIMVLLASGGIGMPALQAMLSR---QVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 57.9 bits (140), Expect = 2e-11 Identities = 78/368 (21%), Positives = 133/368 (36%), Gaps = 34/368 (9%) Query: 18 IVYIIVLGALVGLGPFTIDLYLPAFPVIKDQFGVSDAAVQLTLTGTTIGFALGQLVVGP- 76 ++ V VG+G L +P P + S+ + +AL Q P Sbjct: 9 VILSTVALDAVGIG-----LIMPVLPGLLRDLVHSNDVTAHYGILLAL-YALMQFACAPV 62 Query: 77 ---WSDRVGRRLPLIVATSLHILASLGAALAPDVTVLLVFRILQGAGAAGGAVVAMAMVR 133 SDR GRR L+V+ + + A AP + VL + RI+ G A GAV A + Sbjct: 63 LGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIA 121 Query: 134 DLFGGRPLVRMLSRLALVTGLAPILAPVIGSQLLRFVDWRGVFYALTAYAILVVIAVTFF 193 D+ G R ++ G + PV+G L+ F+A A L + F Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLGG-LMGGFSPHAPFFAAAALNGLNFLTGCFL 180 Query: 194 IVETLPKDRVRVEEKG-TLLRRYRSVLGDR-------VFVGVALIGGMQFAGLFSYLSSS 245 + E+ +R + + L +R G VF + L+G + A L+ Sbjct: 181 LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQV-PAALWVIFG-- 237 Query: 246 SFLFQDVYGFDAQQFGILF-GINSLGVVIGNQIAARLTKVIGPQWILAGVVTVQFLSSAT 304 +D + +DA GI L + I + +G + + + ++ T Sbjct: 238 ----EDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGER----RALMLGMIADGT 289 Query: 305 IVLLGTFTDAGLLGTLIPLFFFILACGFGFPCVQVLGLVNHGHEAGTAASLLGAVNFGLA 364 +L F G + P+ + + G G P +Q + E A L Sbjct: 290 GYILLAFATRGWM--AFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLT 347 Query: 365 GAISPIVG 372 + P++ Sbjct: 348 SIVGPLLF 355
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 32.4 bits (74), Expect = 0.001 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 21/135 (15%) Query: 1 MRIIIAGGHGQIARLLERRLADQGHQPVGI---------VRNPDHASDLADAGAEALVLD 51 M+ ++ G G I + +RL + GHQ VGI LA G + +D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 LE-KSGVDQVAEALRGADAVVFAAGGG-------PDSGPERKLTIDRDGAILLADAAERA 103 L + G+ + + + P + + LT G + + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLT----GFLNILEGCRHN 116 Query: 104 GVTRYVMISAMAVDG 118 + + S+ +V G Sbjct: 117 KIQHLLYASSSSVYG 131
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 492 bits (1269), Expect = e-177 Identities = 191/392 (48%), Positives = 261/392 (66%), Gaps = 5/392 (1%) Query: 4 VLVVNSGSSSFKYQLIEMDTESVLASGLVERIGEPTGSTRHKAGGDSWERELPIADHTAG 63 +LV+N GSSS KYQLIE +VLA GL ERIG H A G+ + + + DH Sbjct: 3 ILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDHKDA 62 Query: 64 FQAMLDAF--AEHGPSLEEEPPVAVGHRVVHGGDVFVEPTVVTDDVKADIDDLSALAPLH 121 + +LDA +++G + AVGHRVVHGG+ F ++TDDV I D LAPLH Sbjct: 63 IKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAPLH 122 Query: 122 NPGALQGIAAAQTAFPDVPHVAVFDTAFHQTLPAEAYTYAIDRELAAAHRIRRYGFHGTS 181 NP ++GI A PDVP VAVFDTAFHQT+P AY Y I E ++IR+YGFHGTS Sbjct: 123 NPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGTS 182 Query: 182 HKFVSEAAARLLGKPLEETRIIVLHLGNGASAAAVQGGRSIDTSMGLTPLEGLVMGTRSG 241 HK+VS+ AA +L KP+E +II HLGNG+S AAV+ G+SIDTSMG TPLEGL MGTRSG Sbjct: 183 HKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTRSG 242 Query: 242 DIDPAILFHLARHTDLGLDDLETLLNRRSGLLGLTGLG-DMRDVQRAAAD-GDEAAQTAL 299 IDP+I+ +L ++ +++ +LN++SG+ G++G+ D RD++ AA GD+ AQ AL Sbjct: 243 SIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQLAL 302 Query: 300 GVYRHRIRHYVGAYAAQLGGVDAVVFTAGVGENNPLVRRRSLAGLEFMGIGIDDDRNELI 359 V+ +R++ +G+YAA +GGVD +VFTAG+GEN P +R L GLEF+G +D ++N++ Sbjct: 303 NVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKNKVR 362 Query: 360 SSEARFVSPEGSPVAVLVIPTDEELEIARQSL 391 E +S S V V+V+PT+EE IA+ + Sbjct: 363 GEE-AIISTADSKVNVMVVPTNEEYMIAKDTE 393
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 128 bits (322), Expect = 1e-31 Identities = 142/480 (29%), Positives = 218/480 (45%), Gaps = 17/480 (3%) Query: 1066 GAPAGDATVEFDVGVDGEEGVDSDQTAAIDVDGDGTDGTD-----GAADAAGTDATDAAG 1120 G D+T+ G G +S Q A G G+D G+ AG D++ AG Sbjct: 200 GTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAG 259 Query: 1121 TDATDAAGTDATDAAGTDANDAAGTDATDAAGTDATDAAGTDATDAAGADATDAAGTDAT 1180 +T AG D++ AG + A + AG +T AG D++ AG +T AG ++T Sbjct: 260 YGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEEST 319 Query: 1181 DAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGADATDAAGTDATDAAGTDATDAAG 1240 AG +T A + AG +T AG D++ AG +T AG D++ AG +T A Sbjct: 320 QTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQ 379 Query: 1241 TDAADAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDAADAAGTDAT 1300 + AG +T AG D++ AG +T AG ++T AG +T A + AG +T Sbjct: 380 KGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGST 439 Query: 1301 DAAGTDATDAAGTDAADAAGTDAADAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAG 1360 AG D++ AG + AG D++ AG +T A + AG +T AG +++ AG Sbjct: 440 GTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAG 499 Query: 1361 TDATDAAGTDAADAAGTDATDAAD----------ATDAAGTDATDAAGTDATDAAGTDAT 1410 +T AG + AG +T A +T AG +++ AG +T A ++ Sbjct: 500 YGSTQTAGYGSTLTAGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSV 559 Query: 1411 DAAGTDATDAAGTDAADAAGTDAADAAGTDATDAAGTDATDAAGTDAADAAGTDATDAAG 1470 AG +T A + AG + AG+D++ AG +T A ++ AG +T A Sbjct: 560 LTAGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAR 619 Query: 1471 TDATDAAGTDATDAAGTDAADAAGTDATDAA--DATDAAGTDATDAADATDAADATDGST 1528 + G +T AG D++ AG +T A ++ AG +T A A GST Sbjct: 620 EQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGST 679 Score = 127 bits (319), Expect = 3e-31 Identities = 131/435 (30%), Positives = 204/435 (46%), Gaps = 12/435 (2%) Query: 1106 GAADAAGTDATDAAGTDATDAAGTDATDAAGTDANDAAGTDATDAAGTDATDAAGTDATD 1165 G+ AG D+T AG +T AG +++ AG + + AG +T AG D++ Sbjct: 197 GSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSL 256 Query: 1166 AAGADATDAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGADATDAAGT 1225 AG +T AG D++ AG +T A + AG +T AG D++ AG +T AG Sbjct: 257 IAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGE 316 Query: 1226 DATDAAGTDATDAAGTDAADAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDATD 1285 ++T AG +T A + AG +T AG D++ AG +T AG D++ AG +T Sbjct: 317 ESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQ 376 Query: 1286 AAGTDAADAAGTDATDAAGTDATDAAGTDAADAAGTDAADAAGTDATDAAGTDATDAAGT 1345 A + AG +T AG D++ AG + AG ++ AG +T A + AG Sbjct: 377 TAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGY 436 Query: 1346 DATDAAGTDATDAAGTDATDAAGTDAADAAGTDATDAAD----------ATDAAGTDATD 1395 +T AG D++ AG +T AG D++ AG +T A +T AG +++ Sbjct: 437 GSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSL 496 Query: 1396 AAGTDATDAAGTDATDAAGTDATDAAGTDAADAAGTDAADAAGTDATDAAGTDATDAAGT 1455 AG +T AG +T AG +T A ++ G + AG +++ AG +T A Sbjct: 497 IAGYGSTQTAGYGSTLTAGYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASY 556 Query: 1456 DAADAAGTDATDAAGTDATDAAGTDATDAAGTDAADAAGTDATDAA--DATDAAGTDATD 1513 ++ AG +T A + AG +T AG+D++ AG +T A ++ AG +T Sbjct: 557 NSVLTAGYGSTQTAREGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQ 616 Query: 1514 AADATDAADATDGST 1528 A GST Sbjct: 617 TAREQSVLTTGYGST 631 Score = 123 bits (309), Expect = 4e-30 Identities = 137/453 (30%), Positives = 212/453 (46%), Gaps = 9/453 (1%) Query: 1085 GVDSDQTAAIDVD---GDGTDGTDGAADA--AGTDATDAAGTDATDAAGTDATDAAGTDA 1139 G S QTA D G G+ GT GA + AG +T AG ++T AG +T A + Sbjct: 275 GYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGS 334 Query: 1140 NDAAGTDATDAAGTDATDAAGTDATDAAGADATDAAGTDATDAAGTDATDAAGTDATDAA 1199 + AG +T AG D++ AG +T AG D++ AG +T A + AG +T A Sbjct: 335 DLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTA 394 Query: 1200 GTDATDAAGTDATDAAGADATDAAGTDATDAAGTDATDAAGTDAADAAGTDATDAAGTDA 1259 G D++ AG +T AG ++T AG +T A + AG + AG D++ AG + Sbjct: 395 GADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGS 454 Query: 1260 TDAAGTDATDAAGTDATDAAGTDATDAAGTDAADAAGTDATDAAGTDATDAAGTDAADAA 1319 T AG D++ AG +T A + AG + AG +++ AG +T AG + A Sbjct: 455 TQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTA 514 Query: 1320 GTDAADAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDAADAA--GT 1377 G + A ++ G +T AG +++ AG +T A ++ AG + A G+ Sbjct: 515 GYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGS 574 Query: 1378 DATDAADATDAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDAADAAGTDAADAA 1437 D T +T AG+D++ AG +T A ++ AG +T A + G + A Sbjct: 575 DLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTA 634 Query: 1438 GTDATDAAGTDATDAAGTDAADAAGTDATDAAGTDATDAAGTDATDAAGTDAADAAGTDA 1497 G D++ AG +T AG ++ AG +T A + AG +T AG D++ AG + Sbjct: 635 GADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGS 694 Query: 1498 TDAA--DATDAAGTDATDAADATDAADATDGST 1528 T A ++ AG +T A + GST Sbjct: 695 TQTAGYNSILTAGYGSTQTAQEGSDLTSGYGST 727 Score = 119 bits (298), Expect = 8e-29 Identities = 127/451 (28%), Positives = 202/451 (44%), Gaps = 15/451 (3%) Query: 1066 GAPAGDATVEFDVGVDGEEGVDSDQTAAIDVDGDGTDGTD-----GAADAAGTDATDAAG 1120 G D+++ G G DS TA G+D G+ AG D++ AG Sbjct: 344 GTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAG 403 Query: 1121 TDATDAAGTDATDAAGTDANDAAGTDATDAAGTDATDAAGTDATDAAGADATDAAGTDAT 1180 +T AG ++T AG + A + AG +T AG D++ AG +T AG D++ Sbjct: 404 YGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSS 463 Query: 1181 DAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGADATDAAGTDATDAAGTDATDAAG 1240 AG +T A + AG +T AG +++ AG +T AG +T AG +T A Sbjct: 464 LTAGYGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQ 523 Query: 1241 TDAADAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDAADAAGTDAT 1300 ++ G +T AG +++ AG +T A ++ AG +T A + AG +T Sbjct: 524 NESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGST 583 Query: 1301 DAAGTDATDAAGTDAADAAGTDAADAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAG 1360 AG+D++ AG + A ++ AG +T A + G +T AG D++ AG Sbjct: 584 GTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAG 643 Query: 1361 TDATDAAGTDAADAAGTDATDAAD----------ATDAAGTDATDAAGTDATDAAGTDAT 1410 +T AG ++ AG +T A +T AG D++ AG +T AG ++ Sbjct: 644 YGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSI 703 Query: 1411 DAAGTDATDAAGTDAADAAGTDAADAAGTDATDAAGTDATDAAGTDAADAAGTDATDAAG 1470 AG +T A + +G + AG D++ AG +T A ++ AG +T A Sbjct: 704 LTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAR 763 Query: 1471 TDATDAAGTDATDAAGTDAADAAGTDATDAA 1501 + G +T AG D++ AG +T A Sbjct: 764 EQSVLTTGYGSTSTAGADSSLIAGYGSTQTA 794 Score = 100 bits (249), Expect = 5e-23 Identities = 106/394 (26%), Positives = 177/394 (44%), Gaps = 2/394 (0%) Query: 1106 GAADAAGTDATDAAGTDATDAAGTDATDAAGTDANDAAGTDATDAAGTDATDAAGTDATD 1165 G+ A + G +T AG D++ AG + AG ++ AG +T A ++ Sbjct: 805 GSTQTAQERSDLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDL 864 Query: 1166 AAGADATDAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGADATDAAGT 1225 G +T AG D++ AG +T AG ++ AG +T A ++ G +T AG Sbjct: 865 TTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGY 924 Query: 1226 DATDAAGTDATDAAGTDAADAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDATD 1285 +++ AG +T A + AG ++ A ++ AG +T AG D++ AG +T Sbjct: 925 ESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQ 984 Query: 1286 AAGTDAADAAGTDATDAAGTDATDAAGTDAADAAGTDAADAAGTDATDAAGTDATDAAGT 1345 AG + AG +T A +T AG + AG D++ AG ++ +G + AG Sbjct: 985 TAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGY 1044 Query: 1346 DATDAAGTDATDAAGTDATDAAGTDAADAAGTDATDAADATDA--AGTDATDAAGTDATD 1403 +T +G + AG ++ +G ++ AG + A + AG ++T G + Sbjct: 1045 GSTLISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQIASHRSSLIAGPESTQITGNRSML 1104 Query: 1404 AAGTDATDAAGTDATDAAGTDAADAAGTDAADAAGTDATDAAGTDATDAAGTDAADAAGT 1463 AG ++ AG +T +G D+ AG AG D+T AG + AG ++ AG Sbjct: 1105 IAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTAGDRSKLLAGNNSYLTAGD 1164 Query: 1464 DATDAAGTDATDAAGTDATDAAGTDAADAAGTDA 1497 + AG D AG + AG ++ AG + Sbjct: 1165 RSKLTAGNDCILMAGDRSKLTAGINSILTAGCRS 1198 Score = 95.6 bits (237), Expect = 1e-21 Identities = 107/365 (29%), Positives = 161/365 (44%), Gaps = 9/365 (2%) Query: 1166 AAGADATDAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGADATDAAGT 1225 A D T TD DA ++ T + A +T + Sbjct: 114 ACTEMQAGPGSPDVTSEVKVGNRSLPVTDDIDA-TIESGSTQPTQTIEIATYGSTLSGTH 172 Query: 1226 DATDAAGTDATDAAGTDAADAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDATD 1285 + AG +T+ AG + AG +T AG D+T AG +T AG +++ AG +T Sbjct: 173 QSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQ 232 Query: 1286 AAGTDAADAAGTDATDAAGTDATDAAGTDAADAAGTDAADAAGTDATDAAGTDATDAAGT 1345 + AG +T AG D++ AG + AG D++ AG +T A + AG Sbjct: 233 TGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGY 292 Query: 1346 DATDAAGTDATDAAGTDATDAAGTDAADAAGTDATDAADATDAAGTDATDAAGTDATDAA 1405 +T AG D++ AG +T AG ++ AG +T A G+D T AG +T A Sbjct: 293 GSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQK----GSDLT--AGYGSTGTA 346 Query: 1406 GTDATDAAGTDATDAAGTDAADAAGTDAADAAGTDATDAAGTDATDAAGTDAADAAGTDA 1465 G D++ AG +T AG D++ AG + A + AG +T AG D++ AG + Sbjct: 347 GDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGS 406 Query: 1466 TDAAGTDATDAAGTDATDAA--GTDAADAAGTDATDAADATDAAGTDATDAADATDAADA 1523 T AG ++T AG +T A G+D G+ T D++ AG +T A + A Sbjct: 407 TQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTA 466 Query: 1524 TDGST 1528 GST Sbjct: 467 GYGST 471 Score = 70.6 bits (172), Expect = 5e-14 Identities = 83/306 (27%), Positives = 127/306 (41%), Gaps = 15/306 (4%) Query: 1246 AAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDAADAAGTDATDAAGT 1305 A D T TD DA ++ T + A +T + Sbjct: 114 ACTEMQAGPGSPDVTSEVKVGNRSLPVTDDIDA-TIESGSTQPTQTIEIATYGSTLSGTH 172 Query: 1306 DATDAAGTDAADAAGTDAADAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGTDATD 1365 + AG + + AG + AG +T AG D+T AG +T AG +++ AG +T Sbjct: 173 QSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQ 232 Query: 1366 AA--GTDAADAAGTDATDAADATDAAGTDATDAAGTDATDAAGTDATDAAGTDATDAAGT 1423 G+D G+ T D++ AG +T AG D++ AG +T A + AG Sbjct: 233 TGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGY 292 Query: 1424 DAADAAGTDAADAAGTDATDAAGTDATDAAGTDAADA--------AGTDATDAAGTDATD 1475 + AG D++ AG +T AG ++T AG + AG +T AG D++ Sbjct: 293 GSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSL 352 Query: 1476 AAGTDATDAAGTDAADAAGTDATDAA----DATDAAGTDATDAADATDAADATDGSTDGG 1531 AG +T AG D++ AG +T A D T G+ T AD++ A T G Sbjct: 353 IAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGE 412 Query: 1532 DAPTRA 1537 ++ A Sbjct: 413 ESTQTA 418
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.1 bits (99), Expect = 4e-06 Identities = 65/318 (20%), Positives = 109/318 (34%), Gaps = 34/318 (10%) Query: 18 PAAVLLSSQLVFNLGFYAVVPFLAVVMRDDLGLGALA--IGLVLGARTFSQQGLFLLGGM 75 P V+LS+ + +G ++P L ++RD + + G++L Q + G Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 76 LADRFGPRTLIAAGCVVRVSGYLGLALAAGLPGFLVGAILTGLGGALFSPALQSLVAAAD 135 L+DRFG R ++ Y +A A L +G I+ G+ GA + A + D Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITD 125 Query: 136 ARSRPTRRPGRPSLFAALVLVGEIGAAVGPLAGAALLGLGFSATVLVGAALFAAVGAALW 195 R F + G GP+ G + G AA + Sbjct: 126 GDE-------RARHFGFMSACFGFGMVAGPVLGGLMGGFS-PHAPFFAAAALNGLNFLTG 177 Query: 196 CVIPADAGRAVAASRGEPRAGSEPVGGAAAVPAASADRW-------AAVRDRRFLAFSAL 248 C + ++ + R R P+ + + + A + Sbjct: 178 CFLLPESHK--GERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVI 235 Query: 249 FAVDLVAYNQLYLGLPLELARAGAGNAAVGSAFLAVSLLTIALQWPAALLAKRLGPGRAL 308 F D ++ +G+ L A + S A+ +A RLG RAL Sbjct: 236 FGEDRFHWDATTIGISL------AAFGILHSLAQAMI---------TGPVAARLGERRAL 280 Query: 309 ALGFGTIATGFAALALAS 326 LG TG+ LA A+ Sbjct: 281 MLGMIADGTGYILLAFAT 298
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 138 bits (349), Expect = 2e-40 Identities = 77/341 (22%), Positives = 136/341 (39%), Gaps = 42/341 (12%) Query: 1 MTWLVTGGAGYIGSHIVSAFARAGIDTVVLDDLSSGH---------ASFVPDGVPFHRGS 51 M +LVTG AG+IG H+ AG V +D+L+ + G FH+ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 VLDRELLASVLGSGDIEGVVHVAGYKYAGV--SVQRPLHTYEQNVTATAVLLEEMERAGV 109 + DRE + + SG E V V S++ P + N+T +LE + Sbjct: 61 LADREGMTDLFASGHFERVFISPHR--LAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 110 DSIVFSSSAAVYG-TPDVDLVDERTPKAPESPYGESKLIGEWLLRDQGIAKGLRHASLRY 168 ++++SS++VYG + + + P S Y +K E + GL LR+ Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 169 FNVVGS-GDEGYFDTSPHNLFPLVFDALLDGRTPRINGGDYPTPDGTCVRDYIHVVDLAA 227 F V G G P A+L+G++ + G RD+ ++ D+A Sbjct: 179 FTVYGPWGR-------PDMALFKFTKAMLEGKSIDVYN------YGKMKRDFTYIDDIAE 225 Query: 228 SHVAAARRL---------EAGEPVEP-----VYCLGSGAGVSVREIMTAIARATGIDFEP 273 + + + E G P VY +G+ + V + + + A+ A GI+ + Sbjct: 226 AIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKK 285 Query: 274 EVRDRRPGDPARIVASGELAARDIDWSMRHSLDDMVTSAWD 314 + +PGD A + I ++ ++ D V + + Sbjct: 286 NMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVN 326
>INTIMIN#Intimin signature. Length = 939 Score = 27.3 bits (60), Expect = 0.045 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 3/82 (3%) Query: 36 SAPAQASSAVAGSTPA-TSTATTATVRGTVRKRFDVDDFFGRQPCSSQDLPPSGPLLENL 94 SAP A+ VAG T T + T + ++ +Q S S L + Sbjct: 129 SAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDK--ALNYAAQQAASLGSQLQSRSLNGDY 186 Query: 95 TRCVIEILAGARELDQIARWVS 116 + +AG + Q+ W+ Sbjct: 187 AKDTALGIAGNQASSQLQAWLQ 208
>PF06580#Sensor histidine kinase Length = 349 Score = 51.8 bits (124), Expect = 3e-09 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 37/222 (16%) Query: 286 ELRHQERELITKDATIREIHHRVK-----NNLQTVASLLRIQARRSHTEEAREALGHAQR 340 E+ + + ++A + + ++ N L + +L+ +ARE L Sbjct: 148 EIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDP-----TKAREMLTS--- 199 Query: 341 RVGAIAVVHDTLSEGLNQNVDFDAVFDRVLLLIAEVA------SAHNTRVHPKIVGSFGV 394 LSE + ++ + R + L E+ + + ++ + Sbjct: 200 -----------LSELMRYSLRYSN--ARQVSLADELTVVDSYLQLASIQFEDRLQFENQI 246 Query: 395 LPSAYATPL-ALALTELVTNAVEHGLAGRS--GEVAIEAARTEETLTVSVRDDG-VGLPE 450 P+ + + + LV N ++HG+A G++ ++ + T+T+ V + G + L Sbjct: 247 NPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN 306 Query: 451 GKVGTGLGTQIVRTLIQGELGGTIDWHTLM-GSGTEVTIEVP 491 K TG G Q VR +Q G + +P Sbjct: 307 TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 28.6 bits (64), Expect = 0.032 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%) Query: 184 DIIVFTNGVAE----IDEAGERGLASLGIRVD 211 D+IVFT G+ E I E GL LG ++D Sbjct: 324 DVIVFTAGIGENGPEIREFILDGLEFLGFKLD 355
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 29.9 bits (67), Expect = 0.006 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 5/123 (4%) Query: 10 AGEEAPSILLPAVYDIVWSAVVFVVLLVVIWKYALPRVYAMLDGRTEAIAGGIEKAERAQ 69 G E P + D + +A ++++LVV W V L R E E+A+ Q Sbjct: 442 TGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQ 501 Query: 70 AEADAAKAELTAQLAEARAEAGRIREQARVDATAIAAEIKEQATADAARITASAQQQIEA 129 +A + L++ R R R+ A ++ I+E + D + +Q + Sbjct: 502 ETEEAVEVR----LSKDEQLQQR-RANQRLGAEVMSQRIREMSDNDPRVVALVIRQWMSN 556 Query: 130 ERQ 132 + + Sbjct: 557 DHE 559
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 32.6 bits (74), Expect = 0.001 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 9/75 (12%) Query: 24 EYRRYHDEEWGRPLHGDRPLFEKLCLEGFQA--GLSWITILRKRPRFREVFHGFDVDAVA 81 +YR Y + L E L + G + +F ++FHG D D + Sbjct: 696 QYRSYEFTH-----INGKNLTETDNLYSVEELIGTTRADKF-FGSKFTDIFHGADGDDLI 749 Query: 82 AMDDGDVERLMGDAG 96 +DG+ +RL GD G Sbjct: 750 EGNDGN-DRLYGDKG 763
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 47.8 bits (113), Expect = 2e-07 Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 289 PTPTPTVAPTQAPTPTPTPTVAPTQAPTPTPTPTVAPTQAPTPTPTPTPTPTVAPTT--A 346 P P T +AP P P V+P + P P P P P P P P P P T Sbjct: 311 PRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQ 370 Query: 347 PTPAPTTPA 355 P P +PA Sbjct: 371 PGTRPDSPA 379 Score = 44.0 bits (103), Expect = 3e-06 Identities = 27/87 (31%), Positives = 31/87 (35%), Gaps = 2/87 (2%) Query: 255 VTVTGTKTGYSTTTRTSDAMSVPAPTPTATPTTAPT--PTPTVAPTQAPTPTPTPTVAPT 312 V V T S T D +P P T AP P P V+P + P P P P Sbjct: 289 VQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPG 348 Query: 313 QAPTPTPTPTVAPTQAPTPTPTPTPTP 339 P P P P + P P P P Sbjct: 349 TRPNPEPDPDLNPDANPDTDGQPGTRP 375 Score = 38.2 bits (88), Expect = 2e-04 Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 294 TVAPTQAPTPTPTPTVAPTQAPTPTPTPTVAPTQAPTPTPTPTPTPTVAPTTAPTPAPTT 353 TV P P TP A +AP P P V+P + P P P P P P P Sbjct: 304 TVDVQVIPRPDLTPGSA--EAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDP-DLN 360 Query: 354 PAAAPFT 360 P A P T Sbjct: 361 PDANPDT 367 Score = 32.0 bits (72), Expect = 0.013 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 2/55 (3%) Query: 279 PTPTATPTTAPT--PTPTVAPTQAPTPTPTPTVAPTQAPTPTPTPTVAPTQAPTP 331 P P +P P P P P P P P P + P P P P P Sbjct: 327 PLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVP 381
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 40.0 bits (93), Expect = 2e-06 Identities = 25/166 (15%), Positives = 54/166 (32%), Gaps = 5/166 (3%) Query: 8 ARREDELAEAVWRVIRRDGASGVSVRTVAAEAGLSTGSLRHSFPSRIDLVAHATGLVARR 67 + + R+ + G S S+ +A AG++ G++ F + DL + L Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 68 IDGRIRSR-----RTDPDARRRAVRILAEHLPLDDGRRGEAEVTAALLADAASHPRLREV 122 I R + + E ++ RR E+ +++ Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 123 RAAAHAAARETCLEQLAQLRAAGLLRPDADPEAEADHLQALLAGLA 168 + + + + L A +L D A ++ ++GL Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLM 175
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.9 bits (72), Expect = 0.003 Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 55/206 (26%) Query: 65 GLGD-----SDTDPAPRDLDRLADDLEAVIAAF-------PHRRLVLAGHSWGGQVV--- 109 G+G+ + D LD ++ L A+ A+F R AG +V+ Sbjct: 224 GVGNKLQNLPNLDNIGAGLDTVSGILSAISASFILSNADADTRTKAAAGVELTTKVLGNV 283 Query: 110 -----RVVAARRIARGLATAGVVLVDPSDERARGYGSAAARIGFATQAALVVPLARLGLL 164 + + A+R A+GL+T+ +AA I A A + PL+ L + Sbjct: 284 GKGISQYIIAQRAAQGLSTS---------------AAAAGLIASAVTLA-ISPLSFLSIA 327 Query: 165 RRLHRM-----------ALAGLPEPLLAAAADAAGSVRAARATAAEQRHLLPGLADIAGI 213 + R L + LLAA G++ A+ T + LA ++ Sbjct: 328 DKFKRANKIEEYSQRFKKLGYDGDSLLAAFHKETGAIDASLTTIST------VLASVSSG 381 Query: 214 LGSAAA--LPGIPVRVISGTTVGPLT 237 + +AA L G PV + G G ++ Sbjct: 382 ISAAATTSLVGAPVSALVGAVTGIIS 407
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 29.9 bits (67), Expect = 0.008 Identities = 15/51 (29%), Positives = 26/51 (50%) Query: 292 ISADGLVEMVDVTRMTGADAGDTLAASGFGIAFAGAGGGAFVRQDVGIVAS 342 I A GLV ++ + + GAD G + A F +G G F+ + ++A+ Sbjct: 11 IVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLAT 61
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.7 bits (85), Expect = 9e-05 Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 16/138 (11%) Query: 20 QDATRMALTVFLSGGHLLIEDVPGVGKTMLAKALARSVD------CTVNRIQFTPDLLPS 73 Q+ R+ + + L+I G GK ++A+AL +N DL+ S Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIES 206 Query: 74 DVTGVS------VYSQADHRFEFQPGAVFANIVIGDEINRASPKTQSALLECMEEGQVTV 127 ++ G +++ RFE G + + DEI Q+ LL +++G+ T Sbjct: 207 ELFGHEKGAFTGAQTRSTGRFEQAEGGT---LFL-DEIGDMPMDAQTRLLRVLQQGEYTT 262 Query: 128 DGVTHPLQQPFTVVATQN 145 G P++ +VA N Sbjct: 263 VGGRTPIRSDVRIVAATN 280
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 30.9 bits (69), Expect = 0.025 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 7/61 (11%) Query: 611 TPGRGQAA-----PYAQPSAAPTAAPTPSASPSAPTEATPSATPAPTASAAPGTSGTAGV 665 TPG +A P P+ P P P+ +P T P P A P T G G Sbjct: 316 TPGSAEAPNAQPLPEVSPAENPANNPAPNENPG--TRPNPEPDPDLNPDANPDTDGQPGT 373 Query: 666 R 666 R Sbjct: 374 R 374
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 165 bits (420), Expect = 3e-55 Identities = 69/155 (44%), Positives = 97/155 (62%), Gaps = 5/155 (3%) Query: 4 IAVVPGSFDPVTLGHLDVIRRAARLYDELVVLVVHNPGKTPMLPLGERVALIERVIRDAG 63 A+ PGSFDP+T GHLD+I R RL+D++ V V+ NP K PM + ER+ I + I Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAH-- 59 Query: 64 LPDTVRVDSWGAGLLVDYCRQVGATVLVKGVRSQLDVTYETPMALVNRDLA-DVETVLLL 122 LP+ +VDS+ GL V+Y RQ A +++G+R D E MA N+ LA D+ETV L Sbjct: 60 LPN-AQVDSF-EGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLT 117 Query: 123 PDPAHAHVSSSLVRQVEALGGDVTPYVPAAVADAL 157 ++ +SSSLV++V GG+V +VP+ VA AL Sbjct: 118 TSTEYSFLSSSLVKEVARFGGNVEHFVPSHVAAAL 152
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 29.7 bits (66), Expect = 0.013 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%) Query: 88 VVGAVVAVLVGLVVGTLLGV-----VAGTVGGIVDDVLMRLVDVLLAI 130 V VVA+L L+ GT LG+ V G + +D + ++ +L I Sbjct: 475 GVSYVVALLFSLLAGTTLGIWGIAIVTGILCSYIDKNKLNTINEVLGI 522
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.5 bits (71), Expect = 0.001 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 95 INVVASAHGTGAGQALFDAAV---GDSPA---YLWAADDNPRAAAFYRRNGFARDGGVER 148 I V G G AL A+ ++ L D N A FY ++ F G V+ Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF-IIGAVDT 153 Query: 149 QTYQG 153 Y Sbjct: 154 MLYSN 158
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.8 bits (119), Expect = 2e-09 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 4/105 (3%) Query: 8 IRVVVVDDQSLVRDGFARIVDAQPDMAAVGVCADGEQAVARVVELRPDVVLMDVRMPVLD 67 ++V DD + +R + + V + ++ + D+V+ DV MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 68 GIEATRRLVEGGRAEGTRILGLTTHDTDSYAIRMLRAGAVGFLLK 112 + R+ + +L ++ +T AI+ GA +L K Sbjct: 62 AFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>PF02370#M protein repeat Length = 168 Score = 36.2 bits (83), Expect = 8e-05 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 64 RNAQAAEAAHDKAMRAAEAAQAKA-VRAAEAEQQRVAKVAQR-EAAMQAKAAERDAVARD 121 + Q +K R + + + + EQQ++ Q+ Q A R + RD Sbjct: 79 KEKQERPERREKFERQHQDKHYQEQQKKHQQEQQQLEAEKQKLAKEKQISDASRQGLNRD 138 Query: 122 KSA-RAA 127 A RAA Sbjct: 139 LEASRAA 145
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 62.3 bits (151), Expect = 2e-13 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 1/102 (0%) Query: 236 LKVGDGAEVTDGASVTVQYTGINWNTKKVFDSSWDRGQSATFVTSQVIPGFTKALVGQKV 295 + G GA+ +VTV+YTG + VFDS+ G+ ATF SQVIPG+T+AL Sbjct: 133 IDAGTGAKPGKSDTVTVEYTGTLID-GTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPA 191 Query: 296 GSQVIAIIPPADGYGDKGQGTDIGGTDTIVFVVDILGTQPAA 337 GS +P YG + G IG +T++F + ++ + AA Sbjct: 192 GSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVKKAA 233
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.8 bits (80), Expect = 4e-04 Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 39/182 (21%) Query: 2 TMTADEARAFQDEFARLVRNVEQV-----LLGKS----HVVRLAFTAMVTGGHLLLEDVP 52 + RA + R + + L+G+S + R+ M T L++ Sbjct: 110 ELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGES 169 Query: 53 GTGKTSLARAMAQTVDGTHSRVQFTPDV------LP-------------GDITGVSVYDQ 93 GTGK +ARA+ + + + P V +P G TG + Sbjct: 170 GTGKELVARALHD-----YGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQ--TR 222 Query: 94 RTGEFEFHRGPVFASIVLADEINRASPKTQSALLEVMEEGRVTVDGTPYDVGHPFMVIAT 153 TG FE G ++ L DEI Q+ LL V+++G T G + ++A Sbjct: 223 STGRFEQAEG---GTLFL-DEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAA 278 Query: 154 QN 155 N Sbjct: 279 TN 280
>PF06776#Invasion associated locus B Length = 214 Score = 29.9 bits (67), Expect = 0.036 Identities = 12/99 (12%), Positives = 22/99 (22%), Gaps = 11/99 (11%) Query: 23 RRRGIRALAVTAGLATALSLAGLPAHAATHASAPAAARAAAPAAATPPAPAAVEDATF-- 80 + I+ A + A A A A A + + + Sbjct: 23 ALKAIQMGPAELSPMLASCRRLARRNGARLMLAGAMAIALSFGWSDRADAQGAVRSVHGD 82 Query: 81 ------TPGEARLD---TSGEVIQAHGGQIVPSVDEAGD 110 TP A+ + V+ +V Sbjct: 83 WQIRCDTPPGAKAEQCALIQSVVAEDRSNAGLTVIILKT 121
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 27.8 bits (62), Expect = 0.027 Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 5/32 (15%) Query: 52 CPACGSRLGVRYP-----SGWLCAVCEWRHGD 78 C C + + RYP + L Sbjct: 99 CRGCQAPISARYPLVELLTALLSVAVAMTLAP 130
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 28.7 bits (64), Expect = 0.022 Identities = 25/118 (21%), Positives = 35/118 (29%), Gaps = 17/118 (14%) Query: 56 IAVALLARSAKSSARRTEVEVIASGVEARNTEYMARYSHDPNP-------PEESQPAASP 108 + ALL E VI + EY PNP P S Sbjct: 398 VTCALLQEKYHVEIEIKEPTVIYMERPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSG 457 Query: 109 LSNNSAV----------PAIDFGVVNDRNQGRYRWKLSNLSSTIVAKNVHISGRTPAD 156 + S+V A+ G+ QG Y W +++ + TPAD Sbjct: 458 MQYESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPAD 515
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.6 bits (63), Expect = 0.012 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 59 LSNAVDLDPQRIPPTGWSGTARDLSKYMNLDLLMLLNTVRIDAECDPDISVFEVRPATRP 118 LSN PQ P GW G LS +L+ + + T + AE + IS+ E + R Sbjct: 104 LSNLFGAKPQTELPLGWKG--EPLSGAPDLEGMRVAETDKF-AEGESHISIIETKDKQRL 160 Query: 119 VAK 121 VAK Sbjct: 161 VAK 163
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.047 Identities = 26/126 (20%), Positives = 39/126 (30%), Gaps = 18/126 (14%) Query: 477 KAYAPNVEVEA---EANTEATNVAAEPSEPGDAVDDSGASTPPQAEDASEA--------- 524 P V + + +E AEP+ D PQ++ + A Sbjct: 1119 TQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV---NIKEPQSQTNTTADTEQPAKET 1175 Query: 525 SAVSEPPRTADAPLAKESPAVADVPQAT--DALQGTGASEVSGSPAVADASDASAVSSAP 582 S+ E P T +V + P+ T Q T SE S P +V Sbjct: 1176 SSNVEQPVTESTT-VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNV 1234 Query: 583 ESHHTA 588 E T+ Sbjct: 1235 EPATTS 1240
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 43.0 bits (101), Expect = 5e-08 Identities = 14/48 (29%), Positives = 29/48 (60%) Query: 8 LQKGKSDRGFTLIELVIVVAVIGILAAIAIPAYGSIQATARANTATAN 55 ++ RGFTL+E+++V+ +IG+LA++ +P + A A ++ Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSD 48
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 29.4 bits (66), Expect = 0.030 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%) Query: 270 GIDLLVTTGGVSAGAYEVVRDVLEGGVEFVSVAVQP---GGPQGLGTAEAGGARIPVVAF 326 G+D++V T G+ E+ +L+ G+EF+ + +++ V+ Sbjct: 322 GVDVIVFTAGIGENGPEIREFILD-GLEFLGFKLDKEKNKVRGEEAIISTADSKVNVMVV 380 Query: 327 PGN 329 P N Sbjct: 381 PTN 383
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 167 bits (424), Expect = 4e-51 Identities = 83/363 (22%), Positives = 142/363 (39%), Gaps = 67/363 (18%) Query: 7 LVTGGAGFIGGAIVQAALEEGRRVRVLDSLRADVHGGDPEI---------DPRVELVRGD 57 LVTG AGFIG + + LE G +V +D+L D + D + P + + D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNL-NDYY--DVSLKQARLELLAQPGFQFHKID 60 Query: 58 VTDPDAVAGALD--GVDVVCHQAAKVGLGVDFLDAPDYVTTNDGGTAVLLAAMTRAGIDR 115 + D + + + V ++ + + Y +N G +L I Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 116 LVLASSMVVYGEGAYAGADGPVRPPARRVADLDAGMFDPVDPATGEPLVPQLIGEDVPLD 175 L+ ASS VYG P + + V Sbjct: 121 LLYASSSSVYGLNRK-------------------------MPFSTDDSVDH--------- 146 Query: 176 PRNVYATTKLAQENLASSWTRATGGRAAALRYHNVYGP-GMPQNTPYAGVASLFRSALAR 234 P ++YA TK A E +A +++ G A LR+ VYGP G P + F A+ Sbjct: 147 PVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALF-----KFTKAMLE 201 Query: 235 GEAPRVFEDGRQRRDFVHVRDVAGANLTAL--------AWTADREAGS-----FRAFNVG 281 G++ V+ G+ +RDF ++ D+A A + WT + + +R +N+G Sbjct: 202 GKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIG 261 Query: 282 SGTVHTIGEMAEALAREAGGSAPVTTGEYRLGDVRHITASSDRLRTELGWEPRMTFEEGM 341 + + + + +AL G A + GDV +A + L +G+ P T ++G+ Sbjct: 262 NSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGV 321 Query: 342 REF 344 + F Sbjct: 322 KNF 324
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 103 bits (258), Expect = 1e-28 Identities = 73/255 (28%), Positives = 117/255 (45%), Gaps = 9/255 (3%) Query: 9 KVVLITGGGSGLGRAAAVRLAAEGAQLALVDISEGGLVDTVAA--VMAATPDAAILTVLA 66 K+ ITG G+G A A LA++GA +A VD + L V++ A +A A Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA----FPA 64 Query: 67 DVSKESDVDSYVHQTVERFGRIDGFFNNAGIEGRQNLTEDFTAAEFDKVVAINLRGVFLG 126 DV + +D + G ID N AG+ R L + E++ ++N GVF Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 127 LEKVLAVMREQGSGMVVNTASVGGIRGVGNQSGYAAAKHGVVGLTRNSAVEYGEFGIRIN 186 V M ++ SG +V S + + YA++K V T+ +E E+ IR N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 187 AIAPGAIWTPMVEASMKQISADDP--RGAAEQFIQGNPTKRYGEAEEIASVVAFLLSDDA 244 ++PG+ T M + + + +G+ E F G P K+ + +IA V FL+S A Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 245 AYVNAAVLPIDGGQS 259 ++ L +DGG + Sbjct: 244 GHITMHNLCVDGGAT 258
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 33.6 bits (76), Expect = 0.001 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Query: 58 LGLAIGIADAVVQATGAGLLLEIVLQAVLMSAIVVPAVVLLRRRLDRRSLASIGLSRRIG 117 +GLA+ +AD +V+A ++ L + M ++ P + L+ + + ++L +G+ ++ Sbjct: 346 VGLAVMVADEIVKAATGVSFIQQALNPI-MEHVLKPLMELIGKAIT-KALEGLGVDKKTA 403 Query: 118 RPIALGVGVGAVTGAVVWVPA 138 G VGA+ A+ V Sbjct: 404 EMA--GSIVGAIVAAIAMVAV 422
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 60.3 bits (146), Expect = 1e-12 Identities = 41/187 (21%), Positives = 73/187 (39%), Gaps = 20/187 (10%) Query: 71 PKRVVVLEPVALDTSVALGVIPVGAAVLNETAGVPAYLGADAADAEV--VGTVPEPGVER 128 P R+V LE + ++ +ALG++P G A +T ++ V VG EP +E Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVA---DTINYRLWVSEPPLPDSVIDVGLRTEPNLEL 91 Query: 129 IVALAPDLIIGTESRHAAIHDQLASIAPTVFLAS-----QADPWRDNVALVGEALGRADD 183 + + P ++ + + + + LA IAP R ++ + + L Sbjct: 92 LTEMKPSFMVWS-AGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSA 150 Query: 184 AAALLGDYQARCDAIAQEYAVAGTT----AQMIRPRDGLLTLYGPESFAGSTLECAGFTT 239 A L Y+ ++ + G +I PR L ++GP S L+ G Sbjct: 151 AETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHML--VFGPNSLFQEILDEYGI-- 206 Query: 240 PERDWEG 246 W+G Sbjct: 207 -PNAWQG 212
>cloacin#Cloacin signature. Length = 551 Score = 28.5 bits (63), Expect = 0.042 Identities = 14/38 (36%), Positives = 16/38 (42%) Query: 2 AGPARLSGAGAGGRGSGSGSGSGSGDGPGGRATIHDVA 39 +G G+G G G SG GSG G A VA Sbjct: 52 SGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89
>PF03309#Bvg accessory factor Length = 271 Score = 30.1 bits (68), Expect = 0.017 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 1 MRIGIDVGGTNTDAVLMHGD----RVVVGIKSSTTEDVTSGIVGALAELDRQHPFDPADI 56 M + IDV T+T L+ G +VV + T +VT+ + +D D + Sbjct: 1 MLLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALT--IDGLIGDDAERL 58 Query: 57 DGVMIGTT 64 G +T Sbjct: 59 TGASGLST 66
>PF09025#YopR Core Length = 143 Score = 27.7 bits (61), Expect = 0.046 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 3/90 (3%) Query: 18 HLPAIARGAAILGTGGGGDPYIGRLLAGEAIKELGPIPLADPFDLPDDAVVIPVAMMGAP 77 +LPA+ + A GG P GR LAG LG L F P + + A Sbjct: 22 NLPAVDQVLAFEQALGGEPPAAGRRLAGLENGALGE-RLLQRFAQPLQGLEADRLELKA- 79 Query: 78 TVMVEKLPTVEQLQGAILALARYLGVTPTH 107 ++ +LP Q Q +L L + P Sbjct: 80 -MLRAELPLGRQQQTFLLQLLGAVEHAPGG 108
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.017 Identities = 25/206 (12%), Positives = 70/206 (33%), Gaps = 10/206 (4%) Query: 166 EAVHERIEARRAIDAELAAARAELVDVTATAELQGVGLFEHDHPAESSAELASRLEALRY 225 A+ + + + L A + + ++ L E P E + S E LR Sbjct: 128 TALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187 Query: 226 T--IKNAVRDKRAVTATSGFTFNGSEAQGRRFVSDMSKVLLRAYNAEAENAVKATRAGNL 283 T IK + + A+ ++ +++ + ++ ++ Sbjct: 188 TSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQ 247 Query: 284 HVAQNRLTKAAEQIARSGTMIDLRIQDGYHELRLEEL--QLASAHLRVLQAEKEMERERR 341 +A++ + + + + + ++ +LE++ ++ SA + + E Sbjct: 248 AIAKHAVLEQENKYV------EAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL 301 Query: 342 AELREQAKASAELQAERERLDKERAH 367 +LR+ L E + ++ + Sbjct: 302 DKLRQTTDNIGLLTLELAKNEERQQA 327 Score = 29.4 bits (66), Expect = 0.037 Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 5/113 (4%) Query: 86 AELDDYRARAQTEAEAARRTGADAASALVAAARAERDRILAEAGAERLRAEQEAGAVRLR 145 +L A A T +T + A + R + E + + Sbjct: 125 LKLTALGAEADT-----LKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNV 179 Query: 146 AEEEAGATRRRAEAELQAVDEAVHERIEARRAIDAELAAARAELVDVTATAEL 198 +EEE + + +++ AE A + + + Sbjct: 180 SEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRV 232
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 40.0 bits (93), Expect = 9e-06 Identities = 23/121 (19%), Positives = 29/121 (23%) Query: 264 EPTTPAPTPTVPTPTPTVPTPTPTPTVPTPTPTAPTPTPTPTAPTPTPTAPTPTPTAPTP 323 +P + P P P P V P P P AP P P Sbjct: 48 QPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP 107 Query: 324 TPTAPTPTPTAPTPTPTVPTPRATAPTPTPTVPTPTVTVPTPTATVPTPTPTVGTPTPGT 383 P +P PT T T P +V + + P Sbjct: 108 VKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQY 167 Query: 384 P 384 P Sbjct: 168 P 168 Score = 36.1 bits (83), Expect = 2e-04 Identities = 21/116 (18%), Positives = 25/116 (21%), Gaps = 1/116 (0%) Query: 273 TVPTPTPTVPTPTPTPTVPTPTPTAPTPTPTPTAPTPTPTAPTPTPTAPTPTPTAPTPTP 332 T +P P P T A P P P P P P P P Sbjct: 35 TSVHQVIELPAP-AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVV 93 Query: 333 TAPTPTPTVPTPRATAPTPTPTVPTPTVTVPTPTATVPTPTPTVGTPTPGTPTPTA 388 P P+ P V + T + T T Sbjct: 94 IEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKP 149 Score = 35.3 bits (81), Expect = 3e-04 Identities = 23/114 (20%), Positives = 28/114 (24%), Gaps = 2/114 (1%) Query: 288 PTVPTPTPTAPTPTPTPTAPTPTPTAPTPTPTAPTPTPTAPTPTPTAPTPTPTVPTPRAT 347 +P P + T A P A P P P P P P P V + Sbjct: 41 IELPAP-AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVV-IEKPK 98 Query: 348 APTPTPTVPTPTVTVPTPTATVPTPTPTVGTPTPGTPTPTAGTPTPTAGTPTPT 401 P V P P PT+ T T P + Sbjct: 99 PKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTS 152 Score = 34.2 bits (78), Expect = 8e-04 Identities = 23/117 (19%), Positives = 27/117 (23%), Gaps = 1/117 (0%) Query: 277 PTPTVPTPTPTPTVPTPTPTAPTPTPTPTAPTPTPTAPTPTPTAPTPTPTAPTPTPTAPT 336 P P P + T P P P P P P P P P Sbjct: 44 PAPAQP-ISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK 102 Query: 337 PTPTVPTPRATAPTPTPTVPTPTVTVPTPTATVPTPTPTVGTPTPGTPTPTAGTPTP 393 P P V + + TA + T T T A P Sbjct: 103 PKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRA 159 Score = 33.0 bits (75), Expect = 0.002 Identities = 19/111 (17%), Positives = 22/111 (19%) Query: 300 PTPTPTAPTPTPTAPTPTPTAPTPTPTAPTPTPTAPTPTPTVPTPRATAPTPTPTVPTPT 359 P P P P P P P P P P P Sbjct: 47 AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 106 Query: 360 VTVPTPTATVPTPTPTVGTPTPGTPTPTAGTPTPTAGTPTPTSTTATPIVP 410 +P T A + TA T T+ P Sbjct: 107 PVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGP 157 Score = 31.5 bits (71), Expect = 0.005 Identities = 18/113 (15%), Positives = 22/113 (19%) Query: 316 PTPTAPTPTPTAPTPTPTAPTPTPTVPTPRATAPTPTPTVPTPTVTVPTPTATVPTPTPT 375 P + T A P A P P P P P P V P P P Sbjct: 47 AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 106 Query: 376 VGTPTPGTPTPTAGTPTPTAGTPTPTSTTATPIVPGGTTPGGSLPVTGYDPTP 428 + A T+ + P Sbjct: 107 PVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRA 159
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 110 bits (276), Expect = 3e-30 Identities = 39/121 (32%), Positives = 61/121 (50%) Query: 3 DGPKILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDLIILDVMLPDMN 62 G IL+ DD+ IR +L +L AG+ VR N A + + DL++ DV++PD N Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GFGVTKRLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRR 122 F + R++ A P+L ++A++ I G DY+ KPF L E++ I L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 123 T 123 Sbjct: 122 P 122
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 25.3 bits (55), Expect = 0.042 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 9/69 (13%) Query: 21 SIGRIQAEVAGLHGQLADLQGSWTGSAATAFQGVV---------AEWKGTQQRVEEALAS 71 SI +IQ+++ L L +L+ S+ G AF + A+ + Q + ++A A+ Sbjct: 296 SIEQIQSKIQELGDTLEELRDSFDGYINNAFVNQIHLNFVMPPQAQQQQGQGQQQQAQAT 355 Query: 72 INQALSAAA 80 +A++AAA Sbjct: 356 AQEAVAAAA 364
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.4 bits (81), Expect = 5e-04 Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Query: 144 SPDGAAAGAAGSTP--APSASAGAGTSTGGETAAPDTETGA 182 SP AA GA G P SAGAGT GG D E Sbjct: 389 SPTAAAGGAGGGEPPKKRDPSAGAGTDPGGPGGGDDGEDPF 429
>PF03309#Bvg accessory factor Length = 271 Score = 29.0 bits (65), Expect = 0.032 Identities = 7/38 (18%), Positives = 14/38 (36%) Query: 129 DEVTAAVAGWNLAPFPEAEVVQGTAETFDAGGVDGVYL 166 D + +A ++ V G++ D G +L Sbjct: 111 DRIVNCLAAYHKYGTAAIVVDFGSSICVDVVSAKGEFL 148
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 519 bits (1338), Expect = 0.0 Identities = 296/444 (66%), Positives = 358/444 (80%), Gaps = 11/444 (2%) Query: 1 MLSAVVRIFRTPDLRRKIGFTLGIIALFRLGSFIPAPFVDFANVQSCLAANQGTSGLYEL 60 ML+A R FRTPDLR+K+ FTL II ++R+G+ IP P VD+ NVQ C+ G GL+ L Sbjct: 1 MLTAFARAFRTPDLRKKLLFTLAIIVVYRVGTHIPIPGVDYKNVQQCVREASGNQGLFGL 60 Query: 61 VNLFSGGALLKLSIFALGIMPYITASIIVQLLRVVIPHFDTLYKEGQSGQAKLTQYTRYL 120 VN+FSGGALL+++IFALGIMPYITASII+QLL VVIP + L KEGQ+G AK+TQYTRYL Sbjct: 61 VNMFSGGALLQITIFALGIMPYITASIILQLLTVVIPRLEALKKEGQAGTAKITQYTRYL 120 Query: 121 TIALAVLQSTTLITVARSGALFGQTNVSACTQLVTNDAWYAIMLMVITMTAGTGLIMWMG 180 T+ALA+LQ T L+ ARS LFG+ +V Q+V + + + + MVI MTAGT ++MW+G Sbjct: 121 TVALAILQGTGLVATARSAPLFGRCSVGG--QIVPDQSIFTTITMVICMTAGTCVVMWLG 178 Query: 181 ELITERGIGNGMSLLIFTSVAAAFPTSLIAIQQ----SRGWEVFLLVIAVGLLVVAAVVY 236 ELIT+RGIGNGMS+L+F S+AA FP++L AI++ + GW F VIAVGL++VA VV+ Sbjct: 179 ELITDRGIGNGMSILMFISIAATFPSALWAIKKQGTLAGGWIEFGTVIAVGLIMVALVVF 238 Query: 237 VEQSQRRIPVQYAKRMVGRRTYGGNNTYIPIKVNMAGVVPVIFASSLLYLPALVAQFNQP 296 VEQ+QRRIPVQYAKRM+GRR+YGG +TYIP+KVN AGV+PVIFASSLLY+PALVAQF Sbjct: 239 VEQAQRRIPVQYAKRMIGRRSYGGTSTYIPLKVNQAGVIPVIFASSLLYIPALVAQFAGG 298 Query: 297 PVGQPPAPWVQWITDNLTTGDHPLYMAMYFLLIVGFTYFYVAITFNPEEVADNMKKYGGF 356 G W W+ NLT GDHP+Y+ YFLLIV F +FYVAI+FNPEEVADNMKKYGGF Sbjct: 299 NSG-----WKSWVEQNLTKGDHPIYIVTYFLLIVFFAFFYVAISFNPEEVADNMKKYGGF 353 Query: 357 IPGIRAGRPTAEYLDYVLTRITLPGSLYLGLIALLPLIALSLVGANQNFPFGGASILIVV 416 IPGIRAGRPTAEYL YVL RIT PGSLYLGLIAL+P +AL GA+QNFPFGG SILI+V Sbjct: 354 IPGIRAGRPTAEYLSYVLNRITWPGSLYLGLIALVPTMALVGFGASQNFPFGGTSILIIV 413 Query: 417 GVGLETVKQIDSQLQQRHYEGLLK 440 GVGLETVKQI+SQLQQR+YEG L+ Sbjct: 414 GVGLETVKQIESQLQQRNYEGFLR 437
>SECA#SecA protein signature. Length = 901 Score = 31.8 bits (72), Expect = 0.003 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 10/65 (15%) Query: 74 TARPGIVIGRRGVEAERIRADLEKLTGKQIQLNILEVKNPEAEAQLVAQG-------IAE 126 +P +++G +E + ++ LT I+ N+L K EA +VAQ IA Sbjct: 448 KGQP-VLVGTISIEKSELVSNE--LTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIAT 504 Query: 127 QLAGR 131 +AGR Sbjct: 505 NMAGR 509
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 27.7 bits (61), Expect = 0.041 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 35 QITPNVVTQVRTPEVDGYGAIQIAYGQIDPRKADKPSTGHFDKAGVTPRRHLTEVRTADF 94 +I NV + R P V Y + + I K + ST + D T ++ + RT Sbjct: 271 RIDKNVSPEARHPLVAAYPIVHVDMENIILSKNEDQSTQNTDSQTRTISKNTSTSRT-HT 329 Query: 95 AEYALGQEITVGAFEPGTKV 114 +E E+ F+ G V Sbjct: 330 SEVHGNAEVHASFFDIGGSV 349
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 73.7 bits (181), Expect = 3e-16 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 18/158 (11%) Query: 13 VNIGTIGHVDHGKTTLT-------AAISKVLADKYPSATNVQRDFASIDSAPEERQRGIT 65 +NIG + HVD GKTTLT AI+++ +V + D+ ERQRGIT Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITEL--------GSVDKGTTRTDNTLLERQRGIT 55 Query: 66 INISHVEYETPKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMAQTREHVLL 125 I ++ +D PGH D++ + + +DGAIL+++A DG AQTR Sbjct: 56 IQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA 115 Query: 126 AKQVGVPYLLVALNKSDMVDDEEILELVELEVRELLSS 163 +++G+P + +NK D + L V +++E LS+ Sbjct: 116 LRKMGIP-TIFFINKIDQNGID--LSTVYQDIKEKLSA 150
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 589 bits (1521), Expect = 0.0 Identities = 172/693 (24%), Positives = 302/693 (43%), Gaps = 78/693 (11%) Query: 11 KVRNIGIMAHIDAGKTTTTERILYYTGITHKIGEVHDGAATMDWMAQEQERGITITSAAT 70 K+ NIG++AH+DAGKTT TE +LY +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 71 TCFWNKNQINIIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSETVWRQADKYDV 130 + W ++NIIDTPGH+DF EV RSL VLDGA+ + K+GV+ Q+ ++ K + Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 131 PRICFVNKMDKLGADFYFTVDTIINRLGAKPLVIQLPIGSEGGFEGVIDLVEMRALTWRG 190 P I F+NK+D+ G D I +L A+ ++ Q Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ------------------------- 156 Query: 191 DSKGDVELGAKYDIEEIPADLQDKADEYRAKLLETVAETDDSLLEKYFGGEELTVAEIKA 250 VEL + Q +TV E +D LLEKY G+ L E++ Sbjct: 157 ----KVELYPNMCVTNFTESEQ----------WDTVIEGNDDLLEKYMSGKSLEALELEQ 202 Query: 251 AIRKLTVNSEIYPVLCGSAFKNRGVQPMLDAVIDYLPSPLDVPPMEGHDVRDEEKIIIRK 310 N ++PV GSA N G+ +++ + + S Sbjct: 203 EESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH------------------- 243 Query: 311 PDSTEPFSALAFKVAVHPFFGRLTYVRVYSGTIASGSQVINSTKGKKERIGKIFQMHSNK 370 FK+ RL Y+R+YSG + V S K K +I +++ + + Sbjct: 244 -RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGE 301 Query: 371 ENPVDSVTAGHIYAVIG----LKDTTTGDTLCDPQDQIVLESMTFPEPVIEVAIEPKTKA 426 +D +G I + L GDT PQ E + P P+++ +EP Sbjct: 302 LCKIDKAYSGEIVILQNEFLKLNSVL-GDTKLLPQR----ERIENPLPLLQTTVEPSKPQ 356 Query: 427 DQEKLGVAIQKLAEEDPTFRTEQNQETGQTVIKGMGELHLDILVDRMKREFNVEANVGKP 486 +E L A+ ++++ DP R + T + ++ +G++ +++ ++ +++VE + +P Sbjct: 357 QREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEP 416 Query: 487 QVAYRETIRGTVDKHDFTHKKQTGGSGQFAKIQIKIEPMEVTAEKTYEFDNKVTGGRVPR 546 V Y E + +T + + +A I + + P+ + + YE + V+ G + + Sbjct: 417 TVIYMERPLKKAE---YTIHIEVPPNPFWASIGLSVSPLPLGSGMQYE--SSVSLGYLNQ 471 Query: 547 EYIPSVDAGIQDALQVGILAGYPMVGVKATLLDGAAHDVDSSEMAFKIAGSMAFKEAARK 606 + +V GI+ + G L G+ + K G + S+ F++ + ++ +K Sbjct: 472 SFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKK 530 Query: 607 AKPVLLEPLMAVEVRTPEEYMGDVIGDLNSRRGQIQAMEDASGVKVITANVPLSEMFGYV 666 A LLEP ++ ++ P+EY+ D I + + +++ +P + Y Sbjct: 531 AGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYR 590 Query: 667 GDLRSKTSGRAVYSMSFGSYAEVPKAVADEIVQ 699 DL T+GR+V Y + + Q Sbjct: 591 SDLTFFTNGRSVCLTELKGYHV---TTGEPVCQ 620
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 272 bits (696), Expect = 6e-93 Identities = 96/275 (34%), Positives = 139/275 (50%), Gaps = 11/275 (4%) Query: 42 APSASAAPAVDQAAADAAFTALEGRFGARLGVHAVDTGTGAEVS-WRADERFAYASTIKA 100 A A A Q E + R+G+ +D +G ++ WRADERF ST K Sbjct: 13 ATLPLAVHASPQPLEQ--IKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKV 70 Query: 101 PLAAALLDRVGIAG--MDRAVPIEAADILSYAPVTETRVGGTMTLRELAEAAMTRSDNTA 158 L A+L RV ++R + D++ Y+PV+E + MT+ EL AA+T SDN+A Sbjct: 71 VLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDNSA 130 Query: 159 ANLLLEALGGQAELDAALTALGDDTTVVSRTEPDLNEAIPGDDRDTTTPRAAAALLRAYA 218 ANLLL +GG A L A L +GD+ T + R E +LNEA+PGD RDTTTP + AA LR Sbjct: 131 ANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRKLL 190 Query: 219 LGDPGAIADPLDADERALFTGWLKATQTGATLVRAELPADWTVGDKSGLGEYASRGDVAV 278 L A + W+ + L+R+ LPA W + DK+G GE +RG VA+ Sbjct: 191 TS------QRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGAGERGARGIVAL 244 Query: 279 IWRPDAAPIVIAVHSSKDQQDADADDALISGAARA 313 + + A ++ ++ + I+G A Sbjct: 245 LGPNNKAERIVVIYLRDTPASMAERNQQIAGIGAA 279
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 46.9 bits (111), Expect = 9e-09 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 1/137 (0%) Query: 14 RDARRAELLDAAVRVMAVAGVAGASTRAITAEAGLAHGAFHYCFGVREELLGALLRQEVD 73 R +LD A+R+ + GV+ S I AG+ GA ++ F + +L + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 74 AVVAQLEAAEDPAGAPLGDVVAATLRAELDRVRREPDRQRVLIDLAATVQRIPALADLPA 133 + + V+ L L+ E R+ ++ + + + +A + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 134 WEHGRYVEETRRRFTAA 150 + E+ R Sbjct: 129 AQRN-LCLESYDRIEQT 144
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 33.2 bits (75), Expect = 0.002 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 13/110 (11%) Query: 263 VLVFLASFIPVVGAIVSGAFAVVIALVFVGPLQAVIMLAAVIGVHLLES-------HVLQ 315 VL L + + VV A+ +G ++ +A V + + A ++ A GV ++ HVL+ Sbjct: 320 VLGALLTIVSVVAAVFTGGASLALAAVGLAVMVADEIVKAATGVSFIQQALNPIMEHVLK 379 Query: 316 PLV--MGGAV--HVHPLAVVLSVA--AGSYVGGVAGALFAVPFVATVNVM 359 PL+ +G A+ + L V A AGS VG + A+ V + V V+ Sbjct: 380 PLMELIGKAITKALEGLGVDKKTAEMAGSIVGAIVAAIAMVAVIVVVAVV 429
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.0 bits (122), Expect = 7e-10 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 8/165 (4%) Query: 2 IRIVIADDHPVVRAGL-HAVLDAAADIDVIGEAATPAEAVALAASEDPDLVLMDLQFGQE 60 I++ADD +R L A+ A D+ + + A A+ D DLV+ D+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRI---TSNAATLWRWIAAGDGDLVVTDVVMPD- 59 Query: 61 RTGADATRQIRAAEAAPYVLILTNYDSDGDILSAVEAGASGYLLKDAPPAELLAAVRAAA 120 D +I+ A VL+++ ++ + A E GA YL K EL+ + A Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA- 118 Query: 121 AGESALAPAVASRLLARMRAPRVSLSSREIEVLRLVADGASNTDV 165 + + + S ++ + V TD+ Sbjct: 119 --LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL 161
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 43.4 bits (102), Expect = 8e-08 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 12/69 (17%) Query: 104 EIELSKVYVEAGSHGVGVARPLMAETLRVARELAGERGLGADAGIWLGVNEHNARAIRFY 163 +I ++K Y GV L+ A E A E G+ L + N A FY Sbjct: 94 DIAVAKDY-----RKKGVGTALLH----KAIEWAKENHFC---GLMLETQDINISACHFY 141 Query: 164 ERSGFHIVG 172 + F I Sbjct: 142 AKHHFIIGA 150
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 27.1 bits (60), Expect = 0.037 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 23/131 (17%) Query: 1 MAKSKAYRAAAEKIDPAKAYTASEAVELARETGSSKFDSTVEVALK-------------- 46 M K + + E I + T E V++ ++ G + +TV +K Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSY 60 Query: 47 -------LGVDPRKADQMVRGTVILPHGTGKTARVIVFATGPAAEAAIAAGADEVGGDEL 99 +P ++ R + + +IV T P AI A D + +E+ Sbjct: 61 KYSLPADQRFNP--LSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEI 118 Query: 100 IEKVAGGYTSF 110 + + G T Sbjct: 119 MGTICGDDTIL 129
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 31.4 bits (71), Expect = 2e-04 Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 32 VLFIKQVVQELKKVVTPTRKELLTFTGVVLAFVIVMMVIVSLLD 75 V F ++ E++KV+ PTR+E L T +V A VM +I+ LD Sbjct: 69 VAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLD 112
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 44.2 bits (104), Expect = 2e-07 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 3/110 (2%) Query: 130 EIVPEVAPLPGEPVIDKPGKGAFYATDLDLVLRAGGIDRLILTGITTDVCVSTTMREAND 189 +I+ E+AP + V+ K AF T+L ++R G D+LI+TGI + T EA Sbjct: 107 KIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFM 166 Query: 190 RGYECLVLSDCTGATDPANHDAALRMVTMQGGVFGAVAASGDVLAALAGA 239 + + D H AL G + +L L A Sbjct: 167 EDIKAFFVGDAVADFSLEKHQMALEYAA---GRCAFTVMTDSLLDQLQNA 213
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 43.2 bits (102), Expect = 5e-07 Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 49/182 (26%) Query: 1 MTIVVTAATGRLGSRIVASLLARG--AAASDVLA----TARRPEALADLAAQGVRTARLE 54 M +VT A G +G + LL G D L + + L LA G + +++ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 55 YTDADSVAAAIQPGD-TLVLVSGSEVGQR-------------VPQHTTVIEAAKAAGVGR 100 D + + G V +S + R + ++E + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 101 ILYTSVLRASTTELFIAGEH-------------------KATEEVLAAS-----GVPVTL 136 +LY AS++ ++ K E++A + G+P T Sbjct: 121 LLY-----ASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATG 175 Query: 137 LR 138 LR Sbjct: 176 LR 177
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.8 bits (67), Expect = 0.019 Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 22/157 (14%) Query: 269 GASAFVAGLGFISLQGMQFIG--RMLGDRMVDRFGQRAIARLGGVLVLVGMGAALAFP-- 324 S G I G + +G +VDR G + +G + V A Sbjct: 288 QLSTAEIGSVII-FPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLET 346 Query: 325 -------SVVGTIVGFGVAGFGVATLIPAAMQAADELPG---------FKPGTGLTIVGW 368 +V + G ++T++ ++++ + G GTG+ IVG Sbjct: 347 TSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGG 406 Query: 369 LLRLGFLISPPVVGAIADASSLRFGLIFIPAAGLLVL 405 LL + L ++ D S+ + + + +G++V+ Sbjct: 407 LLSIPLL-DQRLLPMEVDQSTYLYSNLLLLFSGIIVI 442
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.9 bits (64), Expect = 0.027 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Query: 139 RREARAELTELGISTLQDVTVPVENLSGGQRQAVAVARAAAFGSKVVVLDE 189 R + +L+++G+S Q++ ++NL+ QAV+ A+A FG+ +D+ Sbjct: 946 RHDKVDDLSKVGLSRNQELAQKIDNLN----QAVSEAKAGFFGNLEQTIDK 992
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 95.5 bits (237), Expect = 9e-26 Identities = 73/249 (29%), Positives = 111/249 (44%), Gaps = 10/249 (4%) Query: 7 KTALVTGGGSGIGAAISRALAAEGASVVVTDIQLDAAERVVAEIEGAGGTATAFRQDTAK 66 K A +TG GIG A++R LA++GA + D + E+VV+ ++ A AF D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 67 AEDSEAAVAHAVGTYGALHLAVNNAGISAPAADIGDYEISAWDRTRAIDLDGVFYGLRYQ 126 + + A G + + VN AG+ P I W+ T +++ GVF R Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGL-IHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 127 VPAMVEAGGGAIVNMSSVLGSVGFAQNAAYVASKHALVGLTKVAALEYTARGVRTNAVGP 186 M++ G+IV + S V AAY +SK A V TK LE +R N V P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 187 GFIDTPLVRSSLSAD---------ALAYLESQHATGRLGTDKEVAALVLFLLSDDASFIS 237 G +T + S + + +L ++ +L ++A VLFL+S A I+ Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 238 GSYHLVDGG 246 VDGG Sbjct: 248 MHNLCVDGG 256
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.5 bits (71), Expect = 0.014 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 31/108 (28%) Query: 55 AGRALSRRTLLGGAGAGALAILVAQNAAA----PGAAAAQAASNLPFTAITPVDAAVDQF 110 AG L+ + +LG G G ++AQ AA AAA AS + AI+P+ Sbjct: 271 AGVELTTK-VLGNVGKGISQYIIAQRAAQGLSTSAAAAGLIASAVTL-AISPLS------ 322 Query: 111 TVPTGYRWQPIIRWGDPLFSYADDFDADNQTAKLASR--QFGYNNDYL 156 S AD F N+ + + R + GY+ D L Sbjct: 323 -----------------FLSIADKFKRANKIEEYSQRFKKLGYDGDSL 353
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 28.3 bits (63), Expect = 0.005 Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 3/53 (5%) Query: 32 WPRTDPSLPAELVDALESHLGRGRSGVRTAKRAGDD--AGIATARERVSLAKH 82 + + LV+ + + + A+ D+ A + + K Sbjct: 93 NETSASEMVQALVNDYKQISSESKFVIGLAEENQDNATADLFVGLIE-EVEKQ 144
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 27.8 bits (62), Expect = 0.030 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%) Query: 17 LALVGAL--VPVLDLVTGLLAVVGAVFGILALTRKRRRNSRPLAITGLALNVVALAAW 72 LA +GA L +V L ++VGA GI + + S+P+ G L A+A W Sbjct: 219 LAALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRNHHQSKPIPF-GPYL---AIAGW 272
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 27.6 bits (61), Expect = 0.004 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 6/48 (12%) Query: 12 QERVRDEDAPNP-----VWFKPIMFGFMLVGL-AWLIVYYVSLNAFPI 53 +++ +P + F P++F + + L++YY+ N I Sbjct: 478 IQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTI 525
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 33.2 bits (75), Expect = 0.003 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 122 IMGQVLTALEYSHRAGVVHRDIKPGNIMVT-PTGQVKVMDFGI 163 I ++L + +AGVVH DIKPGN++ +G+ V+D G+ Sbjct: 250 IAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGL 292
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 34.7 bits (79), Expect = 0.001 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 22/164 (13%) Query: 58 FRAEARHAALVNHEGIANVFDYGEEDGSAFLVMELVPGEALSTILE------RERVLSTD 111 ++ +H L N G+A V YG A L+M+ V G S L ++ ++++ Sbjct: 184 YKTAGKHPNLANVHGMA-VVPYGNRKEEA-LLMDEVDGWRCSDTLRTLADSWKQGKINSE 241 Query: 112 K---VLDIIAQTALAL--HAAHQAGLVHRDIKPGNLLIT-PDGRVKITDFGIARIADQVP 165 + IA L + H A +AG+VH DIKPGN++ G + D G+ + + P Sbjct: 242 AYWGTIKFIAHRLLDVTNHLA-KAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQP 300 Query: 166 LTATGQVMGTVQYLSPEQASGH-PASPSTDVYSMGIVAYECLAG 208 T + +PE G+ AS +DV+ + C+ G Sbjct: 301 KGFTE------SFKAPELGVGNLGASEKSDVFLVVSTLLHCIEG 338
>PF06872#EspG protein Length = 398 Score = 31.6 bits (71), Expect = 0.007 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%) Query: 262 CGPEAEVSIATALRLSCNIPFAQLGIALGSERIAKMAEAFGYGKSIDVPMA 312 C PEA +I +A S N+P + L RI++ A A+ +S+D+P A Sbjct: 279 CQPEAPTAICSAFYQSFNVP----ALMLTHVRISQ-ASAYNAQRSLDMPNA 324
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 119 bits (301), Expect = 1e-31 Identities = 89/406 (21%), Positives = 155/406 (38%), Gaps = 18/406 (4%) Query: 27 LCLAFFVEMVDNTLLSIALPTIGRALDSGTTGLQWVTSAYSLTFGGLLLTAGSAADRFGR 86 LC+ F +++ +L+++LP I + WV +A+ LTF G +D+ G Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 87 RRVLLIGLAAFGLISV-AVVLVTDIGQLIALRAALGAAAAAMAPVTMSLIFRLFDDEKLR 145 +R+LL G+ SV V + LI R GA AAA + M ++ R E R Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN-R 137 Query: 146 MRSITIVMVVGMSGFVLGPLLGGSILGAVSWQWLLVINAPLALLVWIGVRLGIPADRRDD 205 ++ ++ + G +GP +GG I + W +LL+I + V ++L R Sbjct: 138 GKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKG 197 Query: 206 LTSERLDLPGTVLTVAAIGLGCYTLTSGVERGWLAPVTLACALGAVAAVAGFVLRERRTA 265 D+ G +L I TS + + FV R+ Sbjct: 198 ----HFDIKGIILMSVGIVFFMLFTTSYS---ISFLIVSVLSFLI------FVKHIRKVT 244 Query: 266 SPMIDLAIFRAGPVRGAALTQLGASVAFASILFGLILHFQYAYGWSPMRAGLANL-PIIV 324 P +D + + P L A + + + + S G + P + Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTM 304 Query: 325 TMIAASPIAERLASRLGHRMACLVGTGFLVGGLVGLAWAVEHGYLAIMASMIVFTIG-LR 383 ++I I L R G +G FL + ++ +E M +IVF +G L Sbjct: 305 SVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLE-TTSWFMTIIIVFVLGGLS 363 Query: 384 TIMTICAVALVEAMPANRTSIGAALNDTAQELGTSLGTAVVGTLIA 429 T+ + + ++ G +L + L G A+VG L++ Sbjct: 364 FTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 54.1 bits (130), Expect = 5e-11 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 39/224 (17%) Query: 28 SLDTVLAEAIGILDESGERALTFRALAARLGGGVASIYWYVASRDELLEKVTEEVMGRVL 87 + ++V+ A+ +L+E+G LT R LA +LG ++YW+V ++ LL+ + E++ R Sbjct: 5 NRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHH 64 Query: 88 ADTEPLTHGSDPVDNVRAVALALFDELV-----------RRPWFGQYMLRNNGLQPNSML 136 + P G +R A++ L+ RP Sbjct: 65 DYSLPAA-GESWQSFLRNNAMSFRRALLRYRDGAKVHLGTRP------------DEKQYD 111 Query: 137 MYERIGQQLLGLDLTSRQRFHAVSSIVSYVVGVAADLAEPPPQEFLDSGLDREGFLGTLA 196 E + + + R +A+S++ + +G L+++ L Sbjct: 112 TVETQLRFMTENGFSLRDGLYAISAVSHFTLGAV---------------LEQQEHTAALT 156 Query: 197 DRWRELDPDEYPFAHDAAGEMATHDDLDVFRSGLDLLLAGVRQQ 240 DR D + P +A M + D F GL+ L+ G Q Sbjct: 157 DRPAAPDENLPPLLREALQIMDSDDGEQAFLHGLESLIRGFEVQ 200
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.0 bits (158), Expect = 5e-15 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Query: 26 REQILDAAAALFAEHGLSGTSTRAIAERVGIRQASLYYHFAGKDDLLVELLTRSVRPSLD 85 R+ ILD A LF++ G+S TS IA+ G+ + ++Y+HF K DL E+ S + Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 86 VVRGIEDLVPDRATAAAALHALVMVDFRTLADTPHN---IGTLYLLPEVQGERYDGFRTQ 142 + E + L +++ + + ++ E GE + Q Sbjct: 73 LEL--EYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 143 RRELQDAYGRI 153 R ++Y RI Sbjct: 131 RNLCLESYDRI 141
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.025 Identities = 7/28 (25%), Positives = 12/28 (42%) Query: 1195 VVGAPVAGRVLDVHIRPGEQVAPGQVLA 1222 + V ++ ++ GE V G VL Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLL 125
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 35.9 bits (83), Expect = 7e-04 Identities = 38/220 (17%), Positives = 69/220 (31%), Gaps = 52/220 (23%) Query: 720 TVLLTGANGYLGRFLAIDWLERLAATGGTLVCIVRGADDADARRRLEAAFAADPAFARRF 779 L+TGA G++G ++ +RL G V G D+ + D + + Sbjct: 2 KYLVTGAAGFIGFHVS----KRLLEAGHQ----VVGIDNLNDYY--------DVSLKQAR 45 Query: 780 AELSGSLEVLAGDVSEHRLGLDDERWIDLAAR---VDLVAHAAALVNHVLPYS-----AL 831 EL H++ L D + + V + + + YS A Sbjct: 46 LELLAQ-----PGFQFHKIDLADREGMTDLFASGHFERVFISPHRLA--VRYSLENPHAY 98 Query: 832 FGPNVVGTAEAIRLAIAAGSVPVTFVSSVAVAGGARPGATADAEPSAPGALDEHADIRAT 891 N+ G + + + SS +V G R + + Sbjct: 99 ADSNLTGFLNILEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSV-------------- 144 Query: 892 IPEWAVGDEYANGYGASKWASEVLLREAHEHHGVPVAVFR 931 D + Y A+K A+E++ +G+P R Sbjct: 145 -------DHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.030 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 4/28 (14%) Query: 51 RPGC----VTALVGPNGSGKSTLLRTMA 74 PGC L G G GKSTL+ T+ Sbjct: 590 EPGCKFDYSVVLEGTGGIGKSTLINTLV 617
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 154 bits (391), Expect = 5e-47 Identities = 80/329 (24%), Positives = 132/329 (40%), Gaps = 40/329 (12%) Query: 1 MITRRRTLAMTALAAATALTLTACGTTEEASTGAGTTPAGEQITLTDGTGAEVTLDGPAT 60 +I+RRR L AL+ A A Sbjct: 6 LISRRRLLTAMALSPL-------LWQMNTAHAAAID----------------------PN 36 Query: 61 KVVGTEWNVVENLVSLGVDPVGVADVAGYSAWSSAVPLVNEPADIGTRGEPSVETIASLA 120 ++V EW VE L++LG+ P GVAD Y W S PL + D+G R EP++E + + Sbjct: 37 RIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMK 96 Query: 121 PDLIVATTDLPADAITQLKAIAPVLQVNSADGSKQIQQSEDNLELIAKATGTEDKATEVI 180 P +V + + L IAP N +DG + + + +L +A + A + Sbjct: 97 PSFMVWSAGY-GPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHL 155 Query: 181 GAYDQAVTDAKAKLDAAGLAGSKFLFADAYVDAGAVAIRPFGTGSLIGDVTTELGLENAW 240 Y+ + K + G + L +D + + FG SL ++ E G+ NAW Sbjct: 156 AQYEDFIRSMKPRFVKRGA---RPLLLTTLIDPRHMLV--FGPNSLFQEILDEYGIPNAW 210 Query: 241 TGEVDPAYGLGSTDVEGLTTVGDVQFLYNSNSTQGDDPFASTLAGNAVWQSLPFVTAGDV 300 GE + +G + ++ L DV L + L +WQ++PFV AG Sbjct: 211 QGETN-FWGSTAVSIDRLAAYKDVDVLCFD---HDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 301 HRMPDGIWAFGGPASMTAYAKAVSDLLAG 329 R+P +W +G S + + + + + G Sbjct: 267 QRVPA-VWFYGATLSAMHFVRVLDNAIGG 294
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.0 bits (122), Expect = 8e-10 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 9 RIRAVVVDDAVLLREGLARVLVEAGIDVVAQHADAAGFLAALADDAPDVVVMDVRMPPTF 68 +V DD +R L + L AG DV ++AA +A D+VV DV MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRIT-SNAATLWRWIAAGDGDLVVTDVVMPD-- 59 Query: 69 SDEGIRATVEARRRVPGIGVLLLSQYVEAAYAEEVFRSG 107 + ++ P + VL++S A + G Sbjct: 60 -ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKG 97
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.6 bits (87), Expect = 6e-06 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 7/80 (8%) Query: 59 AVADGALVGFAHVLEI-DGLAHLEQVSVPPEHGRRGRGRALVEASADEARRRGHRRITLR 117 + +G + +G A +E ++V ++ ++G G AL+ + + A+ + L Sbjct: 70 YYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLE 129 Query: 118 TFADVPWNATA---YARAGF 134 T D+ N +A YA+ F Sbjct: 130 T-QDI--NISACHFYAKHHF 146
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 70.7 bits (173), Expect = 2e-15 Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 3/182 (1%) Query: 23 LLTVALIVGISPFATDLYIPGLPAIAADLDASTASVQLTLTAFLVAFAVGQLVIGPISDG 82 L+ + ++ S + LP IA D + AS TAF++ F++G V G +SD Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 83 AGRRRILLAGTALFTLASIVCAIS-PDATTLILARVVQGLGGAAAAVSARAMVGDASTGA 141 G +R+LL G + S++ + + LI+AR +QG G AA +V Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 142 LRSRLFATLAVVNSVGPVVAPLVGGVVLTVWSWRAAFVVLAALGLALTIAAARLLPETLV 201 R + F + + ++G V P +GG++ W ++++L + +T+ L + V Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW--SYLLLIPMITIITVPFLMKLLKKEV 193 Query: 202 RT 203 R Sbjct: 194 RI 195
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 44.3 bits (104), Expect = 5e-07 Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 31/206 (15%) Query: 5 KILTGSAALLVGALALAGCSGSGSGSGDDGGPVEMTLWHNSTTG------PGKAFWDKTT 58 KI TG+ L + AL S S ++G ++ +W N G GK F T Sbjct: 2 KIKTGARILALSALTTMMFSASALAKIEEG---KLVIWINGDKGYNGLAEVGKKFEKDTG 58 Query: 59 ADFNAAHPGVTVTPTSIQNEDLDGKLQTALNSGDAPDIFLQRGGGKLAATVAAGQVMDIT 118 HP + L+ K +GD PDI + +G + +IT Sbjct: 59 IKVTVEHP-----------DKLEEKFPQVAATGDGPDIIFW-AHDRFGGYAQSGLLAEIT 106 Query: 119 DGISADVKGQIAQSAFDANSIDGKAYAMPVAVLPSGIFYSQDLFTAAGITETPKTMDELD 178 + ++ +DA +GK A P+AV + Y++DL + PKT +E+ Sbjct: 107 P--DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL-----LPNPPKTWEEIP 159 Query: 179 AAVEKLKATGVAPIALGAKD---AWP 201 A ++LKA G + + ++ WP Sbjct: 160 ALDKELKAKGKSALMFNLQEPYFTWP 185
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 32.1 bits (73), Expect = 0.002 Identities = 40/179 (22%), Positives = 63/179 (35%), Gaps = 46/179 (25%) Query: 2 IVITGATGALNGATAEHLLRTVPAAGIAVVARD-----------PASARSFADRGVEVRR 50 ++TGA G + ++ LL AG VV D A A G + + Sbjct: 3 YLVTGAAGFIGFHVSKRLLE----AGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHK 58 Query: 51 GDYADAASLPTAFA--GADRLLLVSAS--------DPGADA---VALHRAAVEAATEAGV 97 D AD + FA +R+ + +P A A + +E + Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 98 GRILYTSHQ---GAAPDSPFA-------PARDHAATEG---ILAAS-----GIPWTALR 138 +LY S G PF+ P +AAT+ ++A + G+P T LR Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.6 bits (131), Expect = 3e-11 Identities = 28/127 (22%), Positives = 43/127 (33%), Gaps = 3/127 (2%) Query: 19 TRDRIVDVAADLLRASGRAAVTTRAVSEAAGVQAPTIYRLFGDKEGLLDAVAEREMTRFS 78 TR I+DVA L G ++ + +++AAGV IY F DK L + E + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 79 AAKAEAVRAAAAGAADAVDDLRAGWDATIAFGLANPDLYALMSDPARGPGSPAVRAGVAL 138 + E A D + LR + + LM A V Sbjct: 72 ELELE---YQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 139 LEERVHR 145 + + Sbjct: 129 AQRNLCL 135
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 55.8 bits (134), Expect = 1e-11 Identities = 51/194 (26%), Positives = 75/194 (38%), Gaps = 25/194 (12%) Query: 5 LITGSNRGLGLETARRLVEAGHTVHA----GMRDTADGDAARAVGAHPVQ--LDVDDQAS 58 ITG+ +G+G AR L G + A + + +A H DV D A+ Sbjct: 12 FITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAA 71 Query: 59 VERAIASLPE----LDVLVNNAGILGTAQGVDDLTPEAMLAVLQTNVVAVVRVTQAALPL 114 ++ A + +D+LVN AG+L + L+ E A N V +++ Sbjct: 72 IDEITARIEREMGPIDILVNVAGVLRPGL-IHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 115 LRASDAPVIVNVAS-GVGWPRALRGEDTDERHVLTIPYATSKAALITATVQYAKNLPAF- 172 + + IV V S G PR YA+SKAA + T L + Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMA-----------AYASSKAAAVMFTKCLGLELAEYN 179 Query: 173 -RINATDPGYTATD 185 R N PG T TD Sbjct: 180 IRCNIVSPGSTETD 193
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 132 bits (334), Expect = 9e-40 Identities = 78/255 (30%), Positives = 123/255 (48%), Gaps = 31/255 (12%) Query: 8 RVVVVSGAAQGIGRAIAERFLEEGCRVFGLDL----------------RFRDALPEGVTA 51 ++ ++GAAQGIG A+A +G + +D R +A P Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP----- 63 Query: 52 IVADVTDQASVRAAIAQVVEAAGRVDVLVNNAGINVEGSVETIDPARFQAAFDVNVGGVF 111 ADV D A++ A++ G +D+LVN AG+ G + ++ ++A F VN GVF Sbjct: 64 --ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 112 LLSQAVIPAMKAAGGGRIINAASFAAVIPSVGAAAYGASKAAVVQFTRVLASELGPWGIT 171 S++V M G I+ S A +P AAY +SKAA V FT+ L EL + I Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 172 VNAYAPGMIPTAM--------NGFAEMPEPAQDRLLDTLSIRRWERPDDVADLLVFLASD 223 N +PG T M NG ++ + + + + +++ +P D+AD ++FL S Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 224 RAGYITGTLVDVSGG 238 +AG+IT + V GG Sbjct: 242 QAGHITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 67.0 bits (163), Expect = 3e-15 Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 24/235 (10%) Query: 26 RTLWISGAGSGVGRATAVAAARDGWRLVLSGRRREALEETRALVDDLGSTAVVAPLDVTD 85 + +I+GA G+G A A A G + E LE+ + + A P DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 86 DAALAAVV----ADLDRLDGVVVAAGL--NAPRRSWAEQDVADFDRIVATNLTGPAHQVA 139 AA+ + ++ +D +V AG+ S ++++ + +T + + V+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 140 AALPLLRASGGTVVLVSSYAAWTHSPGAGVAYSASKTALGTLVRDLNAQEAGAGIRATHL 199 ++ G++V V S A AY++SK A + L + A IR + Sbjct: 129 KY--MMDRRSGSIVTVGSNPAGVPRTSMA-AYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 200 CPGTIDSDFLALRPTVPDAAERA---------------AMLTPDDVARAAMFVLA 239 PG+ ++D + AE+ + P D+A A +F+++ Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 28.7 bits (64), Expect = 0.050 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 104 VSDRSSARWFLPIGLLLSALANLVVAFVPAVGASVALFAVVMIVNGFFQGMGWPPSGRTL 163 +SD+ + L G++++ +++ FV S+ + A + G +P + Sbjct: 72 LSDQLGIKRLLLFGIIINCFGSVI-GFVGHSFFSLLIMARFIQGAG---AAAFPALVMVV 127 Query: 164 VHWFSTSE-RGGKTAIWNVAHNVGGAGAGGLAGLAIATFGTWQSAFWFPAIVCIVIALIA 222 V + E RG + + G G G G IA + W P I I + + Sbjct: 128 VARYIPKENRGKAFGLIG-SIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLM 186 Query: 223 FVL 225 +L Sbjct: 187 KLL 189
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 53.3 bits (128), Expect = 2e-10 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 5/116 (4%) Query: 20 RVLLVDDQALVRAGIRVILESEDGIEVVGEAADGEEGVRLAAALAPDVICMDVQMPRVDG 79 +L+ DD A +R + L G +V ++ R AA D++ DV MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 80 LEATRRIVA-DPTIGAAVLMLTTFDREDYLFTALDAGASGFVLKSASPESLVEAVH 134 + RI P + VL+++ + A + GA ++ K L+ + Sbjct: 63 FDLLPRIKKARPDL--PVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 131 bits (332), Expect = 2e-35 Identities = 99/450 (22%), Positives = 182/450 (40%), Gaps = 55/450 (12%) Query: 32 RAWQALIVLLAGMFIALLDTTIVNVALPTIRTSLDASESTLSWIISGYALAFGLALIPAG 91 R Q LI L F ++L+ ++NV+LP I + ++ +W+ + + L F + G Sbjct: 11 RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70 Query: 92 RLGDRYGHKWVFVTGIALFTLASLACGVAQDDLQLVI-ARVVQGLAGGLFVPAVTAFIQL 150 +L D+ G K + + GI + S+ V L+I AR +QG F V + Sbjct: 71 KLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVAR 130 Query: 151 LFPPQARGKAFAIMGAVIGVSSALGPIVGGLIIQAAGEESGWRLVFFVNLPVGLATVIAA 210 P + RGKAF ++G+++ + +GP +GG+I W + + +P+ T+I Sbjct: 131 YIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIA----HYIHWS--YLLLIPM--ITIITV 182 Query: 211 IFLLPSRQVAEQVAGDVRAQSGQRAGTKQGAAAPAKAPAASGVDLVGILLVSAGLVALLV 270 FL+ + + + G D+ GI+L+S G+V ++ Sbjct: 183 PFLM-----------KLLKKEVRIKGH---------------FDIKGIILMSVGIVFFML 216 Query: 271 PLIDGQDQGWPLWTYLSLAGGVVLLALFGAWEVMQTKRSKGVLVPPHLFTHPAFTGGVIL 330 ++L ++ V+ +F V ++ V P L + F GV+ Sbjct: 217 FTTSY------SISFLIVS--VLSFLIF----VKHIRKVTDPFVDPGLGKNIPFMIGVLC 264 Query: 331 AMVYFAAFTSIFFTISILWQSGLGNSALESGLVSI-PFAIGSIVGSSQSNRLTKRLG-RT 388 + F + + + S E G V I P + I+ L R G Sbjct: 265 GGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLY 324 Query: 389 VLVIGTALVSVGLIWLWLVLLNTQAADLTSWMLLVPLLLAGIGNGLFIAPNAQFIVATVD 448 VL IG +SV + +L + TSW + + ++ G + + +++ Sbjct: 325 VLNIGVTFLSVSFLTASFLL------ETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLK 378 Query: 449 PAEAGAASGVIGTVQRVGSAVGIAVIGSVL 478 EAGA ++ + GIA++G +L Sbjct: 379 QQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.4 bits (146), Expect = 4e-13 Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 14/190 (7%) Query: 3 IQDQVALVTGANRGIGRTFVEELLARGARKVYATARRPEAIDVPGV---------EVLRL 53 I+ ++A +TGA +GIG L ++GA + A PE ++ E Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGA-HIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 54 DLADPASVDAA----AAAAQDVTLVVNNAGISTGAALITGDMAEIRREMDTHFYGTLGVI 109 D+ D A++D + ++VN AG+ + + E + G Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 110 RAFAPVLAANGGGGIVNILSALSWFSTSGAGGYAAAKAAEWNMTNAVRLELAEQGTLVQG 169 R+ + + G IV + S + + YA++KAA T + LELAE Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 170 VHLGAADTDI 179 V G+ +TD+ Sbjct: 185 VSPGSTETDM 194
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.8 bits (121), Expect = 5e-10 Identities = 31/183 (16%), Positives = 66/183 (36%), Gaps = 6/183 (3%) Query: 11 RERRRVETSAKLTTLARRLTAQHGLAGFTVEEVCEQAGVSRRTFFNYFASKEDALFGRSA 70 ++ ET + +A RL +Q G++ ++ E+ + AGV+R + +F K D LF Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSD-LFSEIW 63 Query: 71 RVDTADLEEAFVAAGDPEDPALSPTLLDDLADLCLERWARLDTDGTSMQDMHAAFRREPG 130 + +++ E + L + L + H Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 131 LLVRALEAAVEDEAKDVLLVERREGLPAGDLRASVVVQ-----IMGALGRASAREFLAPG 185 +V+ + + E+ D + + + A L A ++ + + G + AP Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183 Query: 186 NAD 188 + D Sbjct: 184 SFD 186
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 148 bits (375), Expect = 3e-41 Identities = 97/430 (22%), Positives = 178/430 (41%), Gaps = 23/430 (5%) Query: 2 TATAPAPLLLTQRRIWIIFSALIAGMLLSSLDQTIVSTAMPTIVGELGGVDHQV-WITTA 60 T+ + + L Q IW+ + S L++ +++ ++P I + W+ TA Sbjct: 3 TSYSQSNLRHNQILIWLCILSF-----FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTA 57 Query: 61 YLLATTIVMPIYGKFGDVLGRRNLFLAAIAIFTLASVGCAFAGDFWSFVVF-RAAQGLGG 119 ++L +I +YGK D LG + L L I I SV F+S ++ R QG G Sbjct: 58 FMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGA 117 Query: 120 GGLMILSQSIIADIVPANQRGKYLGPLGGIFGLSAVGGPLLGGFFVDHLTWQWAFYINIP 179 L ++A +P RGK G +G I + GP +GG ++ W++ + IP Sbjct: 118 AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIP 175 Query: 180 IGIAAFVVAFITLTLPSKRATKRIDVAGVVLLSLATTCLIFFTDFGGDKAYGWGSLATWA 239 + V + L R D+ G++L+S+ + FT +Y L Sbjct: 176 MITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFT-----TSYSISFLIVS- 229 Query: 240 WGLGLVVAASLFVFTESRADDPVIPLSLFRNPVFVNATAIGLALGIGMFAAIGFVPTFLQ 299 V++ +FV + DP + L +N F+ G + + + VP ++ Sbjct: 230 -----VLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMK 284 Query: 300 MSTGTSAAVSG-LLLLPMMVGLIGMSITSGILISRTGRYRIFPIVGTLLTMLALVLMTSL 358 S A G +++ P + +I GIL+ R G + +G ++ + + L Sbjct: 285 DVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVL-NIGVTFLSVSFLTASFL 343 Query: 359 TAQTPVWLICVFLFIFGLGLGLIMQVVVLVVQNAVPAAQIGTATSTNNYFREVGAALGTA 418 T ++ + +F+ G GL V+ +V +++ + G S N+ + G A Sbjct: 344 LETTSWFMTIIIVFVLG-GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIA 402 Query: 419 VFGTLFTTRL 428 + G L + L Sbjct: 403 IVGGLLSIPL 412
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 112 bits (281), Expect = 1e-31 Identities = 80/255 (31%), Positives = 117/255 (45%), Gaps = 14/255 (5%) Query: 56 LTGRKVLITGADSGIGKAVAIAFAREGADIALNFLDEELEDARDTASTIEADGRTAALVP 115 + G+ ITGA GIG+AVA A +GA IA +D E S+++A+ R A P Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAA--VDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 116 GDISDETACQDIVQASVAALGGVDCLVMVAGYQRNEDDILDLDSEQLDRTMKTNVYSLFW 175 D+ D A +I +G +D LV VAG R I L E+ + T N +F Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLR-PGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 176 LSKAVIPHLP--KGGSIITTSSSQAYQPSPDKIDYAVSKGAIRNFTQGLAQQLAPKGIRV 233 S++V ++ + GSI+T S+ A P YA SK A FT+ L +LA IR Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 234 NSVAPGPFWTVLQPVGQSASDVEE-----FGSQSVYGRP----GQPAEIAATYVFLASQE 284 N V+PG T +Q + + E G P +P++IA +FL S + Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 285 SSFTSGETIAVTGGT 299 + + + V GG Sbjct: 243 AGHITMHNLCVDGGA 257
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.006 Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 26/105 (24%) Query: 458 LLSNAVKY----TPEGGTVITEVGVDGDHFRLCVTDDGVGMSAEDTSQLFTRFFRTNSAR 513 L+ N +K+ P+GG ++ + D L V + G Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 514 ASTVAGVGLGLSITRSIVEA---HDGSIEVESAVGTGTTMRVRLP 555 G GL R ++ + I++ G V +P Sbjct: 310 -----STGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>PF06776#Invasion associated locus B Length = 214 Score = 32.2 bits (73), Expect = 0.001 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 9/65 (13%) Query: 65 PRGPATRMRHPMPARLYP------RPARRRPAALAAAAAVIAVVCFGVAQPAGARPEPLP 118 P A +M PA L P R ARR A L A A+ + FG + A A+ Sbjct: 22 PALKAIQM---GPAELSPMLASCRRLARRNGARLMLAGAMAIALSFGWSDRADAQGAVRS 78 Query: 119 HSGDW 123 GDW Sbjct: 79 VHGDW 83
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.1 bits (216), Expect = 8e-22 Identities = 69/340 (20%), Positives = 116/340 (34%), Gaps = 74/340 (21%) Query: 1 MKVLVTGSRGKVGRAAVEALVAAGHDVTGVDLVRPVFD--------AGVVVPG-RYVMAD 51 MK LVTG+ G +G + L+ AGH V G+D + +D + PG ++ D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 LTDAGSAFALVA--GMDAVVHVAA---IPQPTGNPAHVVLQTNLMSTFHMIEAAVRFGVP 106 L D L A + V + NP H +NL +++E + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENP-HAYADSNLTGFLNILEGCRHNKIQ 119 Query: 107 RFVNISSESIVGNFFPERPFLPDYAPVDEEHPL-RPQDPYALSKAFGEQLMDAAVRRSDI 165 + SS S+ G L P + + P YA +K E + + Sbjct: 120 HLLYASSSSVYG--------LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171 Query: 166 RVISLRPSTVHN-----DDNYAS--------------NLGKQVRDASVLTANLWSYIDAD 206 LR TV+ D N GK RD ++YID Sbjct: 172 PATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRD--------FTYID-- 221 Query: 207 DLADAIV-----------------LSVASDLPGHEVFYIAAADNAGGHDFAAELRRHYGD 249 D+A+AI+ + A+ + + V+ I + D+ L G Sbjct: 222 DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI 281 Query: 250 AIELRAIER----VDSSGISTAKARRLLGWEPKRSWRDHL 285 + + V + T ++G+ P+ + +D + Sbjct: 282 EAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGV 321
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 33.0 bits (75), Expect = 0.003 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 44/157 (28%) Query: 277 LAALSAALSAAPS----AHPDPDERWRAASAAGWTNLVLGLASAALAAVIVA-------- 324 L +S LSA + ++ D D R +AA+ T VLG ++ I+A Sbjct: 242 LDTVSGILSAISASFILSNADADTRTKAAAGVELTTKVLGNVGKGISQYIIAQRAAQGLS 301 Query: 325 --GP-AGVVAAAAGLALAP-----------------SLA-----------SSLASAMREP 353 AG++A+A LA++P + S LA+ +E Sbjct: 302 TSAAAAGLIASAVTLAISPLSFLSIADKFKRANKIEEYSQRFKKLGYDGDSLLAAFHKET 361 Query: 354 GAHLPAIATFVVAASGITVGGLGAAFCALVAGVLVHL 390 GA ++ T + ++ G+ AA + G V Sbjct: 362 GAIDASLTTISTVLASVS-SGISAAATTSLVGAPVSA 397
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 38.2 bits (88), Expect = 5e-05 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 211 SELQAQLTTLRDSRISVEEGFAIGERKRQEEAAAEARRQADARAAAAAAAAAANAAARPP 270 S LQ ++ TL ++ S+E A K +E+AAAEA+R+A+ +A AA AAN A P Sbjct: 198 SSLQIRMNTLTAAKASIE---AAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPA 254 Query: 271 ANAPRPPSSG 280 + ++G Sbjct: 255 NGSVVATAAG 264
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 33.3 bits (76), Expect = 2e-04 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 12/90 (13%) Query: 8 AGAFDLFHVGHLNILKHAKSRCDFLIAGVVSDEMLELNKGITPVVPLAERLEIV----SH 63 G+FD GHL+I++ D + V+ N P+ + ERLE + +H Sbjct: 6 PGSFDPITFGHLDIIERGCRLFDQVYVAVLR------NPNKQPMFSVQERLEQIAKAIAH 59 Query: 64 ISYVDQARAETLPDKVDTWREVGFDVFFKG 93 + E L V+ R+ +G Sbjct: 60 LPNAQVDSFEGL--TVNYARQRQAGAILRG 87
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.1 bits (106), Expect = 1e-06 Identities = 56/312 (17%), Positives = 97/312 (31%), Gaps = 48/312 (15%) Query: 414 PAPVATPAPVATPAPVAAADPAPDAKPTETGTSAPAASAPDEPSSSSDTSAPPAEAPSAT 473 + TP + P ++ A+ E P AP PS +++T A ++ S T Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPP---APATPSETTETVAENSKQESKT 1050 Query: 474 APAAPVTFEQLRDSWPSVVEAVEKAKRSAWLVAVTATPRALADDVLTLSFVSANDAERFK 533 EQ +A E ++ VA A A+ N+ + Sbjct: 1051 VEKN----EQ---------DATETTAQNR-EVAKEAKSNVKAN-------TQTNEVAQSG 1089 Query: 534 ERGAPGQGVSDILRTAILDVLGIRVKFIARVEPHGGAGAP--AGTPAPTGGGSASPAPEA 591 Q T + + + A+VE P +P S + P+A Sbjct: 1090 SETKETQ------TTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 592 SRPAASPATSTGTRPEGGSASTTSAAVSPTASTAVTTPAASPPATKAPPARTTPAGGGWA 651 PA + + +TT+ P T+ P T++ T + Sbjct: 1144 -EPARENDPTVNIKEPQSQTNTTADTEQP---AKETSSNVEQPVTESTTVNTGN-----S 1194 Query: 652 TVAIPTSDPGAAEAPAVRA-----PASRPERSAPAAPAAPAAPAAPPTAPAAAPRATAPS 706 V P + A P V + P +R RS + P ++ + A Sbjct: 1195 VVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATT--SSNDRSTVALCDL 1252 Query: 707 VPARASSVVPDA 718 ++V+ DA Sbjct: 1253 TSTNTNAVLSDA 1264 Score = 36.2 bits (83), Expect = 6e-04 Identities = 37/190 (19%), Positives = 59/190 (31%), Gaps = 11/190 (5%) Query: 313 PEDELERMRAQAVAFGAVELSRAADVVNAALTEMTGATSPRLHLELLVARVLVPASDDTH 372 P + VA + + S+ + TE T A+ V A+ T+ Sbjct: 1028 PAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNR----EVAKEAKSNVKANTQTN 1083 Query: 373 RGALARVERLERRVGVADAGADPAPAAVAPVATPTPAPAAAPAPVATPAPVATPAPVAAA 432 A + E E + A A V T +P + A Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 433 DPAPDAKPTETGTSAPAASAPDEPSSSSDTSAPPAEAPSATAPAAPVTFEQLRDSWPSVV 492 +PA + PT + ++++DT P E S PVT ++ SVV Sbjct: 1144 EPARENDPTVN-----IKEPQSQTNTTADTEQPAKETSSNVEQ--PVTESTTVNTGNSVV 1196 Query: 493 EAVEKAKRSA 502 E E + Sbjct: 1197 ENPENTTPAT 1206 Score = 33.1 bits (75), Expect = 0.005 Identities = 30/233 (12%), Positives = 54/233 (23%), Gaps = 21/233 (9%) Query: 594 PAASPATSTGTRPEGGSASTTSAAVSPTASTAVTTPAASPPATKAPPARTTPAGGGWATV 653 + T + + S + + + A A PPA TP+ Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEI-----------ARVDEAPVPPPAPATPSETTETVA 1041 Query: 654 AIPTSDPGAAEAPAVRAPASRPERSAPAAPAAPAAPAAPPTAPAAAPRATAPSVPARASS 713 + E A + + A A A T A + + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 714 VVPDAH-------VPDFEEPEPDEFGPAEPGWATGGASPDSAPPVARSVPAQQQQPAAAA 766 + + P P A P + P + + Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 767 SGTGSA---PRPDTAAAAPAASPAAAPQRYGESVVRELLQATFIEEKPVERKA 816 + T + P +T++ + G SVV T +P Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSE 1214 Score = 30.8 bits (69), Expect = 0.030 Identities = 27/139 (19%), Positives = 42/139 (30%), Gaps = 22/139 (15%) Query: 398 AAVAPVATPTPAPAAAPAPVATPAPVATPAPVAAADPAPDAKPTETGTSAPA---ASAPD 454 V +P + P A PA P T T PA +S + Sbjct: 1123 PKVTSQVSPKQEQSETVQPQAEPAR--ENDPTVNIKEPQSQTNTTADTEQPAKETSSNVE 1180 Query: 455 EPSSSSDTSAP---PAEAPSATAPAAPVTFEQLRDSWPSVVEAVEKAKRSAWLVAVTATP 511 +P + S T E P T PA + P+V ++ +V + P Sbjct: 1181 QPVTESTTVNTGNSVVENPENTTPA---------TTQPTVNSESSNKPKNRHRRSVRSVP 1231 Query: 512 RALADDVLTLSFVSANDAE 530 + + S+ND Sbjct: 1232 HN-----VEPATTSSNDRS 1245 Score = 30.4 bits (68), Expect = 0.038 Identities = 28/189 (14%), Positives = 51/189 (26%), Gaps = 3/189 (1%) Query: 570 AGAPAGTPAPTGGGSASPAPEASRPAASPATSTGTRPEGGSASTTSAAVSPTASTAVTTP 629 A P+ P+ + EA P +PAT + T S + T Sbjct: 1005 ADVPS---VPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET 1061 Query: 630 AASPPATKAPPARTTPAGGGWATVAIPTSDPGAAEAPAVRAPASRPERSAPAAPAAPAAP 689 A A VA S+ + + A+ + Sbjct: 1062 TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQE 1121 Query: 690 AAPPTAPAAAPRATAPSVPARASSVVPDAHVPDFEEPEPDEFGPAEPGWATGGASPDSAP 749 T+ + + + +V +A + + +EP+ A+ S + Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 750 PVARSVPAQ 758 PV S Sbjct: 1182 PVTESTTVN 1190
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 30.2 bits (68), Expect = 0.016 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 21/107 (19%) Query: 112 RIVDVTPGRVRDALGEGAIAIVAGFQGFNRGTGDITTLGRGGS----------DTTAVAL 161 V+ ++ + G I I +G G + + G D L Sbjct: 172 GHVEAET--IKKLVERGVIVIASG-------GGGVPVILEDGEIKGVEAVIDKDLAGEKL 222 Query: 162 AAALGADVCEIYTDVDGIFTADPRVVPLARKIDRITSEEMLELAASG 208 A + AD+ I TDV+G + + + EE+ + G Sbjct: 223 AEEVNADIFMILTDVNGAALYYGT--EKEQWLREVKVEELRKYYEEG 267
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.019 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 513 GSVDTSGGGSVTSPMQATVVK-LAVEEGQQVVKGDLLVVLEA 553 G + SG P++ ++VK + V+EG+ V KGD+L+ L A Sbjct: 88 GKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTA 129
>PF01206#SirA family protein Length = 76 Score = 27.0 bits (60), Expect = 0.035 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%) Query: 358 PVV---DALAELRPAQVVYVACDPVALARDVALFAER-GYELRSVR 399 P++ LA + +V+YV +D F+++ G+EL + Sbjct: 18 PILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQK 63
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 44.4 bits (105), Expect = 2e-07 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 19 RVAVVDDHESVRLGLKAACLDAGFEFILAAANARELVEGLVGRECDVVVLDLSLGDGSSV 78 + V DD ++R L A AG++ + +NA L + + D+VV D+ + D ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 79 TDNVKA--AQGTGAAVLVHSIADRVASVREALAAGAAGVIPKSSATQTVMAAVAT 131 D + VLV S + + +A GA +PK ++ + Sbjct: 64 -DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF06580#Sensor histidine kinase Length = 349 Score = 36.0 bits (83), Expect = 2e-04 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 7/87 (8%) Query: 335 NSLQHAGTSAETITRTLVISGHGDEG-VAIDVVDDGVGFDQRRIPTERLGLRVSIKERVA 393 N ++H G + +++ G D G V ++V + G + + GL+ +++ER+ Sbjct: 266 NGIKH-GIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQ-NVRERLQ 323 Query: 394 QAGG---LVTIDSAPGEGTAVRIRWPA 417 G + + G+ + P Sbjct: 324 MLYGTEAQIKLSEKQGKVN-AMVLIPG 349
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.1 bits (70), Expect = 0.025 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 520 LDKTGTVTTGVMSLVRAVAAAGVDADELVRVAAALEARSEHPVARAVVE 568 L K G + + + + A + + DEL++ + S +A+A +E Sbjct: 139 LGKAGGILSTFQNFL-GTALSSMKIDELIKKQKSGGNVSSSELAKASIE 186
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 53.3 bits (128), Expect = 7e-10 Identities = 58/311 (18%), Positives = 110/311 (35%), Gaps = 21/311 (6%) Query: 41 LGLFVALLPPIIVSLALKVAEVAPDDTAGTLSLVLGLGALVALVVNPLAGRLSDRTPGRF 100 +GL + +LP ++ L V +D ++L L AL+ P+ G LSD RF Sbjct: 21 IGLIMPVLPGLLRDL------VHSNDVTAHYGILLALYALMQFACAPVLGALSD----RF 70 Query: 101 GMRRPWIVGGVVLGYGALILLTQATTVLALVGAWML--VQGAFNAAIAALIA-VMADSAR 157 G RRP ++ + ++ A + L ++ + GA A A IA + R Sbjct: 71 G-RRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDER 129 Query: 158 PRNRGRVAAAIGVAQNGSLVVGTFIVQLFTTTTQQVLVPGAIGVAVVLAFALAFRDRVLT 217 R+ G ++A G V+G + + A+ L + Sbjct: 130 ARHFGFMSACFGFGMVAGPVLGGLMGGF--SPHAPFFAAAALNGLNFLTGCFLLPESHKG 187 Query: 218 ERPTSRLSLKELLGSFVFDPRRNPDFGWAWLMRFLLTASAVTATNYLAFYLIDDLGVAQA 277 ER R L SF + + F++ + D Sbjct: 188 ERRPLRREALNPLASFRWARGMTV-VAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDAT 246 Query: 278 DVANAVFVATLFNVIGVVSTTFVAGWLSDRLGRRKVFVAAAALVAVIGLVILALAPSLAV 337 + F ++ ++ + G ++ RLG R+ + + G ++LA A + Sbjct: 247 TIG---ISLAAFGILHSLAQAMITGPVAARLGERR-ALMLGMIADGTGYILLAFATRGWM 302 Query: 338 VYVAQLVIGAG 348 + +++ +G Sbjct: 303 AFPIMVLLASG 313
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 74.3 bits (182), Expect = 1e-18 Identities = 39/206 (18%), Positives = 80/206 (38%), Gaps = 12/206 (5%) Query: 8 RRYAKGAARRREILEAALALIAERGYSASSLQEIADAVGISKAGVLHYFDSREALIAAVL 67 + + R+ IL+ AL L +++G S++SL EIA A G+++ + +F + L + + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 68 EERDAHSAADYRE------AVPDGDPADMVGMLLRASSHNADTPGLVALYSRLVVDAAGA 121 E +++ E P +++ +L ++ L+ + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 122 EHPA---HSYIADRYDRVVGSVAAQVRALGVELPAGLDPDSFARVAVAVSDGLQLQWSYR 178 + + YDR+ ++ + A LPA L A + GL W + Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEA--KMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 179 PE-IDMRDALERAIRALSGGVLPLPS 203 P+ D++ + L L P+ Sbjct: 182 PQSFDLKKEARDYVAILLEMYLLCPT 207
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 32.7 bits (74), Expect = 0.003 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%) Query: 78 VTNRGSRTLRGVVRDAWQPSAGASSTRDRV------RIPAGERRAIRLSLTPTRRGERRT 131 + N+G+ T R VV + P A S+ RV + GE R I + P +RG R T Sbjct: 233 IVNQGTATARNVVVENPVPDGYAHSSGQRVLTFTLGDMQPGEHRTITVEFCPLKRG-RAT 291 Query: 132 ERVTIRSAGPLGLAARQATLLSPGAVRV 159 T+ G A T+++ V+V Sbjct: 292 NIATVSYCGGHKNTASVTTVINEPCVQV 319
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 42.5 bits (100), Expect = 1e-06 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 17/151 (11%) Query: 17 GKAVVGQDGAVTGMI--IALLARG--HVLLEGVPGVAKTLLVRALSEA-LRLDTARVQFT 71 G +VG+ A+ + +A L + +++ G G K L+ RAL + R + V Sbjct: 136 GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAIN 195 Query: 72 PDLMPGDITGSLVYDSREGAFS---------FRRGPVFTSILLADEINRTPPKTQSALLE 122 +P D+ S ++ +GAF+ F + T L DEI P Q+ LL Sbjct: 196 MAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGT--LFLDEIGDMPMDAQTRLLR 253 Query: 123 AMEERQVTVDGESHALP-DPFLVAATQNPVE 152 +++ + T G + D +VAAT ++ Sbjct: 254 VLQQGEYTTVGGRTPIRSDVRIVAATNKDLK 284
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.0 bits (226), Expect = 2e-23 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 1/139 (0%) Query: 3 ARILVVDDDTALAEMIGIVLRTEGFEPSFCGDGGQALAAFHDAKPDLVLLDLMLPGLDGI 62 A ILV DDD A+ ++ L G++ + DLV+ D+++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 QVCDLIRAE-SGVPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRPAA 121 + I+ +P+++++A++ +K E GA DY+ KPF+ EL+ I L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 AASPGLLQVGDLVVDVEGH 140 L + + G Sbjct: 124 RRPSKLEDDSQDGMPLVGR 142
>SECA#SecA protein signature. Length = 901 Score = 1125 bits (2912), Expect = 0.0 Identities = 416/876 (47%), Positives = 563/876 (64%), Gaps = 38/876 (4%) Query: 1 MASVLEKVLRVGEGRTLRKLQNYAKAVNQLEEDFTHLTDEELKNETVELRERHANGESLD 60 + +L KV RTLR+++ +N +E + L+DEELK +T E R R GE L+ Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 61 DLLPEAFAAVREASRRTLGLRHFDVQIMGGAALHLGNIAEMKTGEGKTLVATLPAYLNAI 120 +L+PEAFA VREAS+R G+RHFDVQ++GG L+ IAEM+TGEGKTL ATLPAYLNA+ Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 121 ASRGVHVITVNDYLASYQSELMGRVFRALGMTTGVILAGQTPQQRREQYAADITYGTNNE 180 +GVHV+TVNDYLA +E +F LG+T G+ L G +RE YAADITYGTNNE Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 181 FGFDYLRDNMAWQASDMVQRGHFFAVVDEVDSILIDEARTPLIISGPSAGDANRWFTEFA 240 +GFDYLRDNMA+ + VQR +A+VDEVDSILIDEARTPLIISGP+ + + Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSE-MYKRVN 240 Query: 241 TVAKRLV-----------PEVDYEVDEKKRTVGVLEAGIEKVEDHLGI-------DNLYE 282 + L+ E + VDEK R V + E G+ +E+ L ++LY Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300 Query: 283 SANTPLISFLNNSIKAKALFKKDKDYVVMNGEVLIVDEHTGRILMGRRYNEGIHQAIEAK 342 AN L+ + +++A ALF +D DY+V +GEV+IVDEHTGR + GRR+++G+HQA+EAK Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK 360 Query: 343 EGVAVKAENQTLATVTLQNYFRLYKKLSGMTGTAETEAAEFMSTYKLGVVPIPTNRPMQR 402 EGV ++ ENQTLA++T QNYFRLY+KL+GMTGTA+TEA EF S YKL V +PTNRPM R Sbjct: 361 EGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR 420 Query: 403 KDQSDLIYKNEKAKFEQVVEDIAERHAAGQPVLVGTTSVEKSEYLSKLLAKKGVRHEVLN 462 KD DL+Y E K + ++EDI ER A GQPVLVGT S+EKSE +S L K G++H VLN Sbjct: 421 KDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN 480 Query: 463 AKNHAREAAIVAQAGRLGSVTVATNMAGRGTDIMLGGNAEFLAVAAMNARGLSPVETPEQ 522 AK HA EAAIVAQAG +VT+ATNMAGRGTDI+LGG+ + VAA+ Sbjct: 481 AKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQA-EVAAL------------- 526 Query: 523 YETEWDDVFADVKAEVDEEAAKVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESR 582 E + +KA+ V+EAGGL+++GTERHESRRIDNQLRGRSGRQGD G SR Sbjct: 527 -ENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSR 585 Query: 583 FYLSLTDDLMRLFNNGAAASLMGRDSVPDDVAIESKVVSRAIRSAQGQVEARNAEIRKNV 642 FYLS+ D LMR+F + + +M + + AIE V++AI +AQ +VE+RN +IRK + Sbjct: 586 FYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQL 645 Query: 643 LKYDDVLNRQREAIYGDRRHILEGDDLQERSQRFLEAVIDDVLDSHIG-EGNGDDWDFDA 701 L+YDDV N QR AIY R +L+ D+ E E V +D++I + + WD Sbjct: 646 LEYDDVANDQRRAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPG 705 Query: 702 LWTELKTLYPISITIDEVITEAGSKGRVNRDFVRREILSDAKLAYSKREEQLGGAAMREL 761 L LK + + + I E + + ++ + +R IL+ + Y ++EE +G MR Sbjct: 706 LQERLKNDFDLDLPIAEWLDKEPE---LHEETLRERILAQSIEVYQRKEEVVGAEMMRHF 762 Query: 762 ERRVVLSVIDRRWREHLYEMDYLKDGIGLRAMAQRDPLVEYQREGFALFQQMMGAIREET 821 E+ V+L +D W+EHL MDYL+ GI LR AQ+DP EY+RE F++F M+ +++ E Sbjct: 763 EKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEV 822 Query: 822 VGFLFNLEVEVQAPADAESVGPRIQAKGLAANQATA 857 + L ++V + + R++A+ LA Q + Sbjct: 823 ISTLSKVQVRMPEEVEELEQQRRMEAERLAQMQQLS 858
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.9 bits (62), Expect = 0.017 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 29/134 (21%) Query: 19 RSPAVVLLTALIALEALGMAGVTALLVVDLLTSTPSSVASAVALIALAALAAVLLASVVR 78 P V+L + + + + A + + V + I L+A A+L+ + Sbjct: 895 SIPVSVMLVVPLGI----VGVLLAATLFNQKNDVYFMVG-LLTTIGLSAKNAILIVEFAK 949 Query: 79 GILR-------------GRSWVRP-----AAVTWQVLQIAVGAGSLQGADARQDLG---- 116 ++ R +RP A VL +A+ G+ G+ A+ +G Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGA--GSGAQNAVGIGVM 1007 Query: 117 WGLIVPSVLVLVLL 130 G++ ++L + + Sbjct: 1008 GGMVSATLLAIFFV 1021
>PF06340#Vibrio cholerae toxin co-regulated pilus biosynthesis protein F (TcpF) Length = 338 Score = 31.9 bits (72), Expect = 0.004 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 12/89 (13%) Query: 69 GEDRDGLEIFTKVYFPT------GAKGHNDTGLSRKHIMASID-----GSLERLQTDHVD 117 G RD LE KV FPT A ++ ++ G + LQ ++D Sbjct: 58 GMSRDYLENCVKVSFPTSQDMFYDAYSSTESDGAKTRTKEDFSARLLAGDYDSLQKLYID 117 Query: 118 LYQAHR-YDYETPLEETMQAFADVVRQGK 145 Y A +D+E P + ++ + +GK Sbjct: 118 FYLAQTTFDWEIPTRDQIETLVNYANEGK 146
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.2 bits (148), Expect = 9e-14 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 7/174 (4%) Query: 3 EPRITERGRRTRQRIIEATGEQILATGIGGTTLDDVRAATLTSKSQLFHYFPGGKIELVR 62 + + + TRQ I++ G+ T+L ++ A ++ ++ +F K +L Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHF-KDKSDLFS 60 Query: 63 EVAEWEGRQLLEAQEPHIHDLGSWESWEAWRTGL-----VDYYIGRGRWACPIGSLATQA 117 E+ E + E + + R L R R I + Sbjct: 61 EIWELSESNIGELELEYQAKFPGD-PLSVLREILIHVLESTVTEERRRLLMEIIFHKCEF 119 Query: 118 AAVDAELERTIAASMRAWRAFLARGVERMREAGLVAATADPERIATVILAAIQG 171 A +++ + + ++ EA ++ A R A ++ I G Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISG 173
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (267), Expect = 6e-30 Identities = 85/253 (33%), Positives = 120/253 (47%), Gaps = 13/253 (5%) Query: 17 LAGRTAVITGSTSGIGEAVARVLAASGAEVVVSGRDADRARAVVAAITAAGGTAHAVPAD 76 + G+ A ITG+ GIGEAVAR LA+ GA + + ++ VV+++ A A A PAD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 77 LGGGYDGIRAFARDAAAALGGRVDILVNNAGVYPVGATAGLADDDLDGILAVNVRAPHVL 136 + AR G +DILVN AGV G L+D++ + +VN Sbjct: 66 VRDSAAIDEITARIEREM--GPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 137 VAELAPAMAERGTGAIVDVGSWMSRVGIPFGAAYTASKAAIEQMTRTWAAEYGPRGVRVN 196 ++ M +R +G+IV VGS + V AAY +SKAA T+ E +R N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 197 SVAPGATSTP-------GNAADADVLAAMTAGTVAGVPV----RPVDIAFAVRFLVSDEA 245 V+PG+T T V+ G+P+ +P DIA AV FLVS +A Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 246 AFVHGARLDVDGG 258 + L VDGG Sbjct: 244 GHITMHNLCVDGG 256
>cloacin#Cloacin signature. Length = 551 Score = 44.7 bits (105), Expect = 9e-07 Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 8/78 (10%) Query: 610 GGGMMGGRGGGDAFGGAIMGGIIGGLLSGGGGWGGG--------GGGGGFSGGGFGGGGG 661 GG G G + G I GG G + GG G G GGG G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 662 FSGGGFGGGGGGGFSGGD 679 +GGG G GGG +GG+ Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 43.9 bits (103), Expect = 2e-06 Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 613 MMGGRGGGDAFGGAIMGGIIGGLLSGGGGWGGGGGGGGFS------GGGFGGGGGFSGGG 666 M GG G G G G I G +G G GG G G+S GGG G G + GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 667 FGGGGGGGFSGGD 679 G GGG + G Sbjct: 61 GHGNGGGNGNSGG 73 Score = 42.4 bits (99), Expect = 5e-06 Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Query: 603 GGGYGGYGGGMMGGRGGGDAFGGAIMGGIIGGLLSGGGGWGGGGGGGGFSGGGFGGGGGF 662 G G G+ G G D G + GG G WGGG G G GGG G Sbjct: 17 SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN------GGGNGN 70 Query: 663 SGGGFGGGGGG 673 SGGG G GG Sbjct: 71 SGGGSGTGGNL 81 Score = 35.1 bits (80), Expect = 0.001 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Query: 599 DLDQGGGYGGYGGGMMGGRGGG---DAFGGAIMGGIIGGLLSGGGGWGGGGGGGGFSGGG 655 +++ G G GGG G G + +GG GI G SG G GG G GG SG G Sbjct: 19 NINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTG 78 Query: 656 FGGGGGFSGGGFG 668 + FG Sbjct: 79 GNLSAVAAPVAFG 91
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 122 bits (308), Expect = 4e-36 Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 15/241 (6%) Query: 11 LRGRTALVTGAASGIGAAIARHFVLAGAEVVLLDLSPAVHEEARRIGAVGAVTA-----D 65 + G+ A +TGAA GIG A+AR GA + +D +P E+ A A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 66 VSDEARVAGAVAEAGRMLGRIDVLVNSHGILTEAPVAEMTLATWQRTIDVDLTSVFLLTR 125 V D A + A R +G ID+LVN G+L + ++ W+ T V+ T VF +R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 126 AVLPGMLERRDGRIITVASQLGQKGGVGLAHYAAAKAGVIAFTKSLALEVSGSNVLANVI 185 +V M++RR G I+TV S +A YA++KA + FTK L LE++ N+ N++ Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 186 APGPISTPLVDAISVDWKDAKRR----------ELPLGRFGTVDEVAPTAVLLAADPDGN 235 +PG T + ++ D A++ +PL + ++A + L + G+ Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 236 L 236 + Sbjct: 246 I 246
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 116 bits (292), Expect = 1e-33 Identities = 73/253 (28%), Positives = 111/253 (43%), Gaps = 11/253 (4%) Query: 7 VALVTGGASGIGRDTAVRLAARGDRVVVGRFPGDPHDAGATLEAVRAVGGTGIAVDLDVA 66 +A +TG A GIG A LA++G + +P + +++A A DV Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAA--VDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 67 STPSVDAFVRAALEEYGQVDHVIAAAGILRRAPLGAMTDERWDEVLGVDLGGVMRVIRAA 126 + ++D E G +D ++ AG+LR + +++DE W+ V+ GV R+ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 127 EPLL--GRGSSIVAVSSIAGGVYGWGDHAHYATAKAGVVGLVRSAAVELAPRGIRANTVI 184 + R SIV V S GV A YA++KA V + +ELA IR N V Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAA-YASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 185 PGLIETPQSLDAVNSLGPDGLRRAGDR------IPAGRVGRPEEVASVIAFLASEDAGYV 238 PG ET G IP ++ +P ++A + FL S AG++ Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 239 TGQTLTVDGGLTI 251 T L VDGG T+ Sbjct: 247 TMHNLCVDGGATL 259
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.1 bits (73), Expect = 0.005 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 9/146 (6%) Query: 44 FLAWTIAVYDFILFGTL---LPDISRDFGWDTSESLLVSTLVSVGTAVVVL---LVGPMV 97 + + D + G + LP + RD + L+++ + ++G + Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67 Query: 98 DRLGRRIGMVVSVTGTALSSGATALSAGAVSLVGIRSISGLGLAEQSINATYLNEIYEQT 157 DR GRR ++VS+ G A+ A + L R ++G+ A ++ Y+ +I T Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADI---T 124 Query: 158 EDERIRRNKGFVYAMVQTGWPLGALL 183 + + R+ GF+ A G G +L Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVL 150 Score = 30.2 bits (68), Expect = 0.016 Identities = 30/132 (22%), Positives = 45/132 (34%), Gaps = 8/132 (6%) Query: 329 GWLGDRLGRRNVIVGGWLVAGLAFAVMLLGPDDPTFVMGAYMVGLFFLLGPYAAILFFQA 388 G L DR GRR V++ A + +A+M P +G + G+ G A Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADI 123 Query: 389 GCFDSDCRATG--SSFIGAMSQPGAIIGGFLLTGLTASAMSFGQAALWVGAGGILASALV 446 D R G S+ G G ++GG + G + F AA L Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLM--GGFSPHAPFFAAAAL----NGLNFLTG 177 Query: 447 MLLAKPTGETRE 458 L + + Sbjct: 178 CFLLPESHKGER 189
>PF06438#Heme acquisition protein HasAp Length = 205 Score = 30.7 bits (69), Expect = 0.006 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 237 ATEEVLRA-GHAPDALFATND-FAAIGAMGALHDAGLSVPDDVALVGYNDTP 286 A + + A A D + N F + A G H + +V +VG + P Sbjct: 147 ALQGQIDALLKAVDPSLSINSTFDQLAAAGVAHATPAAAAAEVGVVGVQELP 198
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 40.5 bits (95), Expect = 7e-06 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 13/80 (16%) Query: 28 LVVGATGISGSALVDQLTAEGWDVLAL-------------SRRAGADRPGVRWISADLRS 74 LV GA G G + +L G V+ + +R +PG ++ DL Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63 Query: 75 ADDLRRALAGEQPSHVFFTA 94 + + A VF + Sbjct: 64 REGMTDLFASGHFERVFISP 83
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 33.4 bits (76), Expect = 7e-04 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 13/197 (6%) Query: 49 PVIMLSIFSVAFGSSGNLGTAPDGSGGVSAAAYYLPGMIA-AGILLSGVQNLAVDIAMER 107 P+I L FG LG GGVS A+ GM+A + + + + + Sbjct: 42 PLIYL------FGLGAGLGVMVGRVGGVSYTAFLAAGMVATSAMTAATFETIYAAFGRME 95 Query: 108 SDGTLKRLAGSPLPVLSYFIGKGGQVIVTSLLQVVVLLLVARFAFGVELPTDAGRWATFA 167 T + + + L + +G+ + L + +VA + + A Sbjct: 96 GQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLSLLYALPVIA 155 Query: 168 WVYGLGITSSAVLGIALSRIPRSGA-SATAVITPIVLVLQFISGVYLTFTMLPTWLQDVA 226 GL S ++ AL+ T VITPI+ F+SG LP Q A Sbjct: 156 LT-GLAFASLGMVVTALAPSYDYFIFYQTLVITPIL----FLSGAVFPVDQLPIVFQTAA 210 Query: 227 AFLPLKWMAQGMRAVFL 243 FLPL +R + L Sbjct: 211 RFLPLSHSIDLIRPIML 227
>PF06580#Sensor histidine kinase Length = 349 Score = 44.9 bits (106), Expect = 4e-07 Identities = 55/336 (16%), Positives = 111/336 (33%), Gaps = 51/336 (15%) Query: 83 ALVFLALVIPAATWGVASLSSFAVVQCVLCPLVWLLLDRVRDAVIGTLVLTGSIAVGFVV 142 +L+ L L ++ + ++ + ++ +L VIG + + ++ ++ Sbjct: 49 SLMGLVLTHAYRSF----IKRQGWLKLNMGQIILRVLPAC--VVIGMVWFVANTSIWRLL 102 Query: 143 GFGDLPGALPTMALSQGLSLVGTIALGLWITRIADLSRERLELLEGLRAAQAQVEELGRE 202 F + T+ L+ + + +W + + + Q ++ + +E Sbjct: 103 AFINTKPVAFTLPLALSIIFNVVVVTFMW--SLLYFGWHFFKNYKQAEIDQWKMASMAQE 160 Query: 203 AGTARERERLSADIH-----DTVAQDLTGLVMLAQRGRRELRGGDADATGATLAELEEGA 257 A + L A I+ + L + L D L L E Sbjct: 161 A----QLMALKAQINPHFMFNA----LNNIRALILE--------DPTKAREMLTSLSELM 204 Query: 258 RDALTQTRA-IVAATAPMELTDG-LGQALARLGERLSREAGIPVEVRADPGVGSVDRDAE 315 R +L + A V+ + + D L A + +RL E I + D + Sbjct: 205 RYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIM----------DVQ 254 Query: 316 VVLLRCAQEGLANVRRHA-----DASAVELVLDRDGGDVVLVIRDDGRGF-DPARASGGY 369 V + Q + N +H + L +D G V L + + G + S G Sbjct: 255 VPPM-LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGT 313 Query: 370 GLDGMRRRLAAAGG---RLDVASGPDGTRLTARIPA 402 GL +R RL G ++ ++ IP Sbjct: 314 GLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.0 bits (161), Expect = 9e-15 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 4/116 (3%) Query: 6 IRVAVVDDHPVVRGGLAALLASAD-DIDVVGQAADGKAAVELAIAERPDVVLMDLRMPVL 64 + V DD +R L L+ A D+ + AA + A D+V+ D+ MP Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA---AGDGDLVVTDVVMPDE 60 Query: 65 DGVGATARIREEAPDVRVLVLTTYETDASILTAIEAGASGYLLKAAPEEEILAGVR 120 + RI++ PD+ VLV++ T + + A E GA YL K E++ + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 52.5 bits (126), Expect = 1e-09 Identities = 83/401 (20%), Positives = 134/401 (33%), Gaps = 37/401 (9%) Query: 18 VALLALAMGGFAIGTTEFVAMGLLPQLAADLLPEVAARSTEAANAQAGTLISAYALGVVV 77 V L +A+ IG + M +LP L DL+ + A G L++ YAL Sbjct: 9 VILSTVALDAVGIG----LIMPVLPGLLRDLVH------SNDVTAHYGILLALYALMQFA 58 Query: 78 GAPTIAAASARAPRRKLLLWLLLAFTLGTVLSAILPSFGLVVLARFVAGLPHGAYFGIAS 137 AP + A S R RR +LL L + + A P ++ + R VAG+ GA +A Sbjct: 59 CAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAG 117 Query: 138 LVAAQLMGEGKRARGVAFVLAGLTIANVIGVPIVTWIGQNAGWRVAYLVVAAIFAATFVA 197 A + +RAR F+ A V G + +G + AA+ F+ Sbjct: 118 AYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLT 176 Query: 198 VFLAVPAQAGNPEATLRRE----------LRAFTRLQVWLALLIGAIGFGGFFAVYTFVS 247 +P LRRE R T + +A+ G A Sbjct: 177 GCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPA--ALWV 234 Query: 248 PMVTEVTGLPEWSVPLALVVVGL------GMTAGNLAGGWWADRDVKAALLSLFGLLIVS 301 + ++ ++L G+ M G +A +R AL+ Sbjct: 235 IFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVA-ARLGER---RALMLGMIADGTG 290 Query: 302 LVGLVLTASNPVGLFGFLFLIGGSAAALSPGIQIRL-MDVAHDSQSIAAALNHSALNTGN 360 + L + + L G P +Q L V + Q + + + Sbjct: 291 YILLAFATRGWMAFPIMVLLASGGIG--MPALQAMLSRQVDEERQGQLQGSLAALTSLTS 348 Query: 361 AVGAALGGVTVAAGLGYTSPAIVGVGLSIAGLLIALASFGL 401 VG L AA + + G ++ L + GL Sbjct: 349 IVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGL 389
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.7 bits (90), Expect = 1e-05 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 5/118 (4%) Query: 8 ITLAIVDDHRMLLGALTEWIRNAASDIEMVAAVSTWPDLLTHPRFPVDVVLLDLDLKDNL 67 T+ + DD + L + + A D+ + + +T + D+V+ D+ + D Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA--AGDGDLVVTDVVMPDEN 61 Query: 68 PISLKIATLKT--TGVKTVLMSTYSEPNVVREALASGALGYLVKSEDASMIVDAIRLA 123 L + +K + ++MS + +A GA YL K D + ++ I A Sbjct: 62 AFDL-LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 42.9 bits (101), Expect = 5e-07 Identities = 31/141 (21%), Positives = 51/141 (36%), Gaps = 7/141 (4%) Query: 13 QRVRVALVDDHVLLLDGLSARLSRPRTGVEVVATSPTWNGLVRDDRFPEAFDVVVLDLAL 72 + + DD + L+ LSR G +V TS D+VV D+ + Sbjct: 2 TGATILVADDDAAIRTVLNQALSR--AGYDVRITSNAATLWRWIAA--GDGDLVVTDVVM 57 Query: 73 --RDEVPVAQKIRTLTGAGLTSVLLSTHADPSTIHGAMRAGASAVVPKAESSEELIASIH 130 + + +I+ L +++S T A GA +PK ELI I Sbjct: 58 PDENAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 131 AAADGTPRQSALVQQAMQDFH 151 A R+ + ++ QD Sbjct: 117 RALAEPKRRPSKLEDDSQDGM 137
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 72.0 bits (176), Expect = 5e-17 Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 11/190 (5%) Query: 5 KRVVVTGASSGIGAATVRLFRSRGWDVVGVARREDRLRAL--AEETGATYAVADLTVQAD 62 K +TGA+ GIG A R S+G + V ++L + + + A +A A D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 63 VDALRDH----LRETGHVHALVNNAGGAVGTDSVEGGSSEDWAWMYEINVLAVRRVTSAL 118 A+ + RE G + LVN G + + S E+W + +N V + ++ Sbjct: 69 SAAIDEITARIEREMGPIDILVN-VAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 119 LPLLRAGVPEGGSADIVTVSSIAAHVPYEGGGGYNAAKAAAHAMLGVLRLELAGEPIRVI 178 + GS IVTV S A VP Y ++KAAA L LELA IR Sbjct: 128 SKYMMD--RRSGS--IVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 179 EIAPGQVRTE 188 ++PG T+ Sbjct: 184 IVSPGSTETD 193
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.4 bits (133), Expect = 1e-11 Identities = 21/92 (22%), Positives = 35/92 (38%) Query: 22 RRGPRTSGDARASIIEAARMLFIESGADRVSARRIAAAAGVDPSLVRYYFGSLEALLEEA 81 R+ + + + R I++ A LF + G S IA AAGV + ++F L E Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 82 LRPSEDLIAPYLRLRELPVEERGAALVAAALH 113 SE I + +++ L Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILI 94
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 32.3 bits (73), Expect = 0.003 Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 12/122 (9%) Query: 317 PVQQPEQPAPRKRAARKVAQRQPGTPAGSTSPVVRGAAGSRPDPRSTQMIPAQDPAPARD 376 P Q + P + P P + + + +P P+ + P RD Sbjct: 62 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK----PKPKPKPKPKPVKKVEQPKRD 117 Query: 377 ADPDEDEVTATWTVLPEDPASAEPSTSTSADADTGSGSEDAAPPKPPRAPRQPRKPATPP 436 P E + + P+ TS+ A + + PRA + +P P Sbjct: 118 VKPVESRPASP-------FENTAPARPTSSTATAATSKPVTSVASGPRALSRN-QPQYPA 169 Query: 437 EE 438 Sbjct: 170 RA 171
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 74.9 bits (184), Expect = 5e-20 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 10/153 (6%) Query: 12 ASADVAAGVAQFLSPVVVNLQALAVNGKQAHWHVRGANFIGVHEFLDVLVAHAQDWADTA 71 + V L+ + N L + HW+V+G +F +HE + L HA + DT Sbjct: 5 NAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTI 64 Query: 72 AERVVALGLPIDARIETVAASTTTAPLTPGFRPSSATIAEVIAQIDATMELVNRAVQEL- 130 AER++A+G + TV T A +T G + + +E++ + + ++ + + Sbjct: 65 AERLLAIGG---QPVATVKEYTEHASITDG--GNETSASEMVQALVNDYKQISSESKFVI 119 Query: 131 ----GEIDVNSQDVAIEIARGLEKDRWFLFAHI 159 D + D+ + + +EK W L +++ Sbjct: 120 GLAEENQDNATADLFVGLIEEVEKQVWMLSSYL 152
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 32.6 bits (74), Expect = 0.020 Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 54/229 (23%) Query: 300 AGLTVAAGLLVGAVPT-------TDAGTRVALALAAASAVALVHAAPRSRAAALPDALER 352 AGL +G+L + D T+ A + + V + + Sbjct: 240 AGLDTVSGILSAISASFILSNADADTRTKAAAGVELTTKVL-----GNVGKGISQYIIAQ 294 Query: 353 RVLRVVGVATATAAVVAGAASAAAPDAVPALPLLVAAVASGAH-AWALTRPAFRAELLGR 411 R + + + A A ++A A + A PL ++A A + + R + LG Sbjct: 295 RAAQGLSTSAAAAGLIASAVTLAIS------PLSFLSIADKFKRANKIEEYSQRFKKLG- 347 Query: 412 VTDGDA----DPRLTGDDVPPSAEASVELVAAPDDATDPAPTSADPLRVLAAAVAGVGAS 467 DGD+ + TG + +AS+ ++ VLA+ +G+ A+ Sbjct: 348 -YDGDSLLAAFHKETG-----AIDASLTTIST----------------VLASVSSGISAA 385 Query: 468 AA-----VPVTALMGGPALLTFCMQLVAAAVVAAALDVAARRLHDPVVA 511 A PV+AL+G +T + + A A + A ++ D + Sbjct: 386 ATTSLVGAPVSALVGA---VTGIISGILEASKQAMFEHVASKMADVIAE 431
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.3 bits (73), Expect = 0.005 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 5/81 (6%) Query: 408 VDADGKVVDVTEFTKPVVRDADAVS-----EEPADADAEAVVADAPAEEAAEAPAAEEAP 462 V+ + VD T T P AD S EE A D V APA + E Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 463 AEKPKKKAPAKKKASEKAADS 483 ++ K ++ A+E A + Sbjct: 1045 KQESKTVEKNEQDATETTAQN 1065
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.012 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%) Query: 118 KSNILLIGPTGCGKTYLAQTL---AKRLNVPFAVADATALTE 156 +++ G +G GK +A+ L KR N PF + A+ Sbjct: 160 DLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR 201
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 25.9 bits (57), Expect = 0.019 Identities = 10/30 (33%), Positives = 13/30 (43%) Query: 33 AGEIIVRQRGTHFHPGVNVGRGGDDTLFAL 62 AGEII Q G F V+ + + A Sbjct: 98 AGEIIGLQMGLSFATFVDPASHLNMPVLAR 127
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 40.2 bits (94), Expect = 4e-06 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 8/125 (6%) Query: 134 LPIVNENDTVATHEIRFGDNDRLAALVARLVDADLLLLLSDVDALYTRPPEEPGARRIEH 193 +P++ E+ + E D D +A V+AD+ ++L+DV+ + + Sbjct: 197 VPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAA-LYYGTEKEQWLRE 254 Query: 194 VGFGDELDGVEIGSTGTGVGTGGAVTKVAAA-RLAAEAGTGVLLTSTAQVHSALAGEHVG 252 V + E G G KV AA R G ++ + AL G+ G Sbjct: 255 VKVEELRKYYEEG----HFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEGK-TG 309 Query: 253 TWFAP 257 T P Sbjct: 310 TQVLP 314
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 31.3 bits (71), Expect = 0.001 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 11 IGVMGGTFDPIHNGHLVAASEVQQHLQL-DEVIFVPTGQPWQKQTVTDGEHRYLMTVIAT 69 + G+FDPI GHL +++ +L D+V P KQ + + R A Sbjct: 2 NAIYPGSFDPITFGHL---DIIERGCRLFDQVYVAVLRNP-NKQPMFSVQERLEQIAKAI 57 Query: 70 AANPRFTV 77 A P V Sbjct: 58 AHLPNAQV 65
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 3e-04 Identities = 45/292 (15%), Positives = 80/292 (27%), Gaps = 22/292 (7%) Query: 69 ERPATPTTADAEASSTSRGDGSGSRPDEATTPPAVPLSAPGIGPDTSAILLSGGVLTRRQ 128 TP A+ S + +R DEA PP P + P + ++ + Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPAT-----PSETTETVAENSKQESK 1049 Query: 129 LRAIRE--AEEAAREQRGSEHDEAQSTPAGSETGSTPSDVEPTAAAVDDAPPSSSETSVP 186 E A E + R + + A ++T T ++ Sbjct: 1050 TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE 1109 Query: 187 PYARYGRGSRATPRPRAPYGSAYRRGTAAEATGAPAADAPAADVEAQEKASDATVPADRE 246 A+ S + + A A V +E S AD E Sbjct: 1110 EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169 Query: 247 ATPAETPSAWPFAPIVPSGDAAGRDVDASGEQPTVPPLAAHSRRSDEDPRPTPSLDATPW 306 PA+ S+ P+ + ++ E P + +PT + +++ Sbjct: 1170 Q-PAKETSSNVEQPV--TESTTVNTGNSVVENPEN--------TTPATTQPTVNSESSNK 1218 Query: 307 VTGSAEPALEPAFGTRASAAEDLPDDRTETPDADSASTVPAPTDSAAPDARA 358 ++ A D T T++ DARA Sbjct: 1219 PKNRHRRSVRSVPHNVEPATTSSNDRSTVA----LCDLTSTNTNAVLSDARA 1266
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.0 bits (73), Expect = 0.005 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Query: 348 IRAITANPAAILRLDHRVGALTPGLDADVVIWSGDPLDVQSRAEHVIIGGSTVY 401 I T NPA L H +G+L G AD+V+W +P + + V++GG+ Sbjct: 406 IAKYTINPAIAHGLSHEIGSLEVGKRADLVLW--NPAFFGVKPDMVLLGGTIAA 457 Score = 29.7 bits (67), Expect = 0.026 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 8/49 (16%) Query: 40 LRDGLVAAVGRAGDVEVPEGAT--------VIDASGRWVLPGFVEAHGH 80 L+DG +AA+G+AG+ ++ G T VI G+ V G +++H H Sbjct: 90 LKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIH 138
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 34.4 bits (79), Expect = 4e-04 Identities = 53/290 (18%), Positives = 89/290 (30%), Gaps = 57/290 (19%) Query: 14 VVAGASGFIGQVLVRELGDEGYLVRTI-------------------GRSGADACWGD--- 51 +V GA+GFIG + + L + G+ V I + G D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63 Query: 52 AEGIRRLLD--GADLLVNLAGKSVNCRYGAANRREILRSRVETTAELARAVADSARPVPM 109 EG+ L + + + RY N S + + + + Sbjct: 64 REGMTDLFASGHFERVFISPHRL-AVRYSLENPHAYADSNLTGFLNILEGCRHNK--IQH 120 Query: 110 WINASTATVYRHATDRPQTESTGELGDDFSPSVGRAWERAFFAPELPATRRVALRIAIVL 169 + AS+++VY P + + S +A A +A + + Sbjct: 121 LLYASSSSVYGLNRKMPFSTD-DSVDHPVSL----------YAATKKANELMAHTYSHLY 169 Query: 170 GRDGALQPLLGLARFGLGGPQLDGRFPGRP----SRIRAGAHHGYQPT---HGRQVFSWL 222 G P GL F + GP GRP + G +G+ + Sbjct: 170 G-----LPATGLRFFTVYGPW------GRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFT 218 Query: 223 HIDDLV-GIIRFVRDTPTLEGPVNASSPAPVTNRRLMKVLRRAVGMPVGL 271 +IDD+ IIR P + + P + +V PV L Sbjct: 219 YIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVEL 268
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 111 bits (280), Expect = 7e-28 Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 7/141 (4%) Query: 19 IRNFCIIAHIDHGKSTLADRMLQMTGVVD---SRSMRAQYLDRMDIERERGITIKSQAVR 75 I N ++AH+D GK+TL + +L +G + S D +ER+RGITI++ Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 76 MPWELDGQTYALNMIDTPGHVDFSYEVSRSLAACEGAILLVDAAQGIEAQTLANLYLALE 135 WE +N+IDTPGH+DF EV RSL+ +GAILL+ A G++AQT + + Sbjct: 63 FQWE----NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK 118 Query: 136 NDLTIIPVLNKIDLPAADPDK 156 + I +NKID D Sbjct: 119 MGIPTIFFINKIDQNGIDLST 139 Score = 88.8 bits (220), Expect = 2e-20 Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 21/246 (8%) Query: 147 IDLPAADPDKYAAELASL-IGGDPSDVLRVSGKTGAGVEDLLDRVSRTIPAPVGDPDAAA 205 + + + + E + V S K G+++L++ ++ + + Sbjct: 190 MSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTHRGQSEL 249 Query: 206 RAMIFDSVYDAYRGVVTYVRMIDGKLSPREKISMMSTRATHEILEIGVS-SPEPTPSDGL 264 +F Y R + Y+R+ G L R+ + +S + +I E+ S + E D Sbjct: 250 CGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSV-RISEKEKIKITEMYTSINGELCKIDKA 308 Query: 265 GVGEVGYL---ITGVKDVRQSKVGDTVTTAARPATEALPGYTEPLPMVFSGLYPIDGSDY 321 GE+ L + V +GDT R E PLP++ + + P Sbjct: 309 YSGEIVILQNEFLKLNSV----LGDTKLLPQRERIEN------PLPLLQTTVEPSKPQQR 358 Query: 322 PDLRDALDKLKLSDAAL-VYEPETSVALGFGFRCGFLGLLHLEIITERLSREFGLDLITT 380 L DAL ++ SD L Y + + FLG + +E+ L ++ +++ Sbjct: 359 EMLLDALLEISDSDPLLRYYVDSATHEIIL----SFLGKVQMEVTCALLQEKYHVEIEIK 414 Query: 381 APSVIY 386 P+VIY Sbjct: 415 EPTVIY 420 Score = 32.9 bits (75), Expect = 0.004 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 2/77 (2%) Query: 414 EPVVKAAILAPKDYVGTIMELCQSRRGILLGMEYLGEDRVEVRYTMPLGEIVFDFFDNLK 473 EP + I AP++Y+ ++ + L + V + +P I ++ +L Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSDLT 594 Query: 474 SKTAGYASLDYEPAGSQ 490 T G + E G Sbjct: 595 FFTNGRSVCLTELKGYH 611
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 28.6 bits (64), Expect = 0.022 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Query: 1 MRRSIIALVIGAALAAGGA-VALPAPADAL 29 M++S+IAL + A A A V L A Sbjct: 1 MKKSLIALTLAALPVAAMADVTLYGTIKAG 30
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.9 bits (69), Expect = 0.004 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 149 EARIRSDLTRRAADALAGASVVIIGDTPADGVAAEAAGFPFVAVATGAYDVGQ 201 EA+ +++ R A+ A+ + V A AAG + VA GA + Q Sbjct: 229 EAKRKAEEQARQQAAIRAANTYAMPANG--SVVATAAGRGLIQVAQGAASLAQ 279
>PF07675#Cleaved Adhesin Length = 1358 Score = 27.8 bits (61), Expect = 0.019 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 19/95 (20%) Query: 34 EPNLPGQDAAWLGDPVSGLGIILQRADAPKAGKNR-----------VHLDLAPDDRTRDQ 82 EP+ P Q + L G + L + DAP A K + + + P + R Sbjct: 329 EPS-PYQPVSNLTATAQGQKVTL-KWDAPSAKKAEGSREVKRIGDGLFVTIEPANDVRAN 386 Query: 83 EVDRVLALGAALVADRRNADGSGWVVLADPEGNEF 117 E VLA AD D +G+ L D + N F Sbjct: 387 EAKVVLA------ADNVWGDNTGYQFLLDADHNTF 415
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 41.9 bits (98), Expect = 2e-06 Identities = 35/179 (19%), Positives = 57/179 (31%), Gaps = 28/179 (15%) Query: 123 DPVSHIGVVAYVVDGKEMSCTANAVESANGLTVATAGHCA-FPGKDPSKMVFVPGYVKGQ 181 PV++I V A + V T+ T H DP + P + Sbjct: 88 APVTYIQVEA---PTGTFIASGVVV---GKDTLLTNKHVVDATHGDPHALKAFPSAINQD 141 Query: 182 --PYTVWPVTSVTLPAGWRETLDPARDTAFLTVGS-PDGRTLTEAVGASPVEFHQPRT-- 236 P + +T +G D A + + + E V + + + Sbjct: 142 NYPNGGFTAEQITKYSG-------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVN 194 Query: 237 HYTTVIGYPAVGRFTGDAPF--LCSGFARATHLEGQTGQELDCDMKEGASGAPFLDGSG 293 TV GYP GD P + + T+L+G + D G SG+P + Sbjct: 195 QNITVTGYP------GDKPVATMWESKGKITYLKG-EAMQYDLSTTGGNSGSPVFNEKN 246
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 31.9 bits (72), Expect = 0.003 Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 21/178 (11%) Query: 118 APVPHMGRLFVHRDGEDFSCSANVVESANRSTIATAGHCLTVRQEFSTDMVFYPRYEEGS 177 + + V F S VV + T+ T H + + +P Sbjct: 85 GHYAPVTYIQVEAPTGTFIASGVVV---GKDTLLTNKHVVDATHGDPHALKAFPSAINQD 141 Query: 178 PSLGAFPVVGGNVTIGWYERNDDDQAEDTSFLAVAHDDEGDDVQSVAGASPVRFFA--PA 235 +P G T + + D + + + +++ + V + + A Sbjct: 142 ----NYP--NGGFTAEQITKYSGE--GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQV 193 Query: 236 AQEVSMYGYPAAGRFDGGELERCAG---LGHVYTEMQIDLGCDMTGGVSGGPILEGDG 290 Q +++ GYP G + G MQ D TGG SG P+ Sbjct: 194 NQNITVTGYP--GDKPVATMWESKGKITYLKGE-AMQYD--LSTTGGNSGSPVFNEKN 246
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 42.7 bits (100), Expect = 1e-06 Identities = 32/252 (12%), Positives = 71/252 (28%), Gaps = 26/252 (10%) Query: 30 SSATAAERPAAPASVTLDASSATVGIHVSSEDAAEAVDFWTPERRAAAIDADAPAPADGT 89 ++ T A ++PA+ L + + + ++ TP+ + Sbjct: 14 ATLTTATLVSSPAANALSSKAMD-----NHPQQTQSSKQQTPKIQKGGNLKPLEQREHAN 68 Query: 90 SDSGAVATDAVADSAHATQIEPIPHMGRIFYTQAGKGYACSANVVESANRSTIATAGHCL 149 + + T + I + S VV + T+ T H + Sbjct: 69 V---ILPNNDRHQITDTTN-GHYAPVTYIQVEAPTGTFIASGVVV---GKDTLLTNKHVV 121 Query: 150 TQK-QVFSDHIVFYPAYDHGESQYGAWPVITGYVPSGWYQRNDDDQGDDSSFMAVKRDDS 208 F A + G + SG D + + ++ Sbjct: 122 DATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSG---------EGDLAIVKFSPNEQ 172 Query: 209 GQDVQSAVGASPVLF--DQPGAEHASAYGYPAAGRFDGESLQWCSGQGEAVSAEQIALPC 266 + + V + + + ++ + GYP G ++ G+ + E + Sbjct: 173 NKHIGEVVKPATMSNNAETQVNQNITVTGYP--GDKPVATMWESKGKITYLKGEAMQYDL 230 Query: 267 DMNAGTSGGPIL 278 G SG P+ Sbjct: 231 STTGGNSGSPVF 242
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 43.7 bits (103), Expect = 1e-06 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 9/101 (8%) Query: 98 IGGIVAGHLGDRIGRKRMLVYSLVLMGIASTLIGVLPTYATIGLASVVGLVLLRLVQGIA 157 IG V G L D++G KR+L++ +++ S + V ++ ++ L++ R +QG Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSL-------LIMARFIQGAG 116 Query: 158 AGAEWGGSALLSVEHAPAHRRGLFGAFTQMGSAGGMLLATG 198 A A ++ + P RG AF +GS M G Sbjct: 117 AAAFPALVMVVVARYIPKENRG--KAFGLIGSIVAMGEGVG 155
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 29.0 bits (65), Expect = 0.013 Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 12/104 (11%) Query: 17 VVVALAVVVVVVGFVLDQLSKRWAVDALGGGETIPLFPTARFALVYNPGVSFGMGAEVGP 76 VVA+AVV +++ V+ ++ +++ + +PL R + G+S + GP Sbjct: 180 TVVAIAVVSILLSVVVPKVVEQFI----HMKQALPLS--TRVLM----GMSDAVRT-FGP 228 Query: 77 LLTVGIMALALGLAVWVGWQIRHRASLLQVLLLSAVLAGALGNL 120 + + ++A + V + Q + R S + LL ++ L Sbjct: 229 WMLLALLAGFMAFRVMLR-QEKRRVSFHRRLLHLPLIGRIARGL 271
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 107 bits (269), Expect = 2e-32 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 2/146 (1%) Query: 34 TASEQLHESMQKVLVDLIELHIQGKQAHWNVVGKNFRDLHLQLDEIIDSAREFSDDLAER 93 T + S+ L + L+ + + HW V G +F LH + +E+ D A E D +AER Sbjct: 8 TNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAER 67 Query: 94 MRALHATPDGRSDTVAETTSLPEYPQGEVDTAETVDLVTQRLEAAVHTMREVHDDVDEE- 152 + A+ P E S+ + E +E V + + + V +E Sbjct: 68 LLAIGGQPVATVKEYTEHASITDGG-NETSASEMVQALVNDYKQISSESKFVIGLAEENQ 126 Query: 153 DPTTADLLHGFITALEQYAWMVSAEN 178 D TADL G I +E+ WM+S+ Sbjct: 127 DNATADLFVGLIEEVEKQVWMLSSYL 152
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 113 bits (283), Expect = 2e-32 Identities = 80/259 (30%), Positives = 121/259 (46%), Gaps = 7/259 (2%) Query: 4 GITGKTALITGADSGIGWETARILLSEGATVVLSDQDQGSLDEAAAKLDGGDRV-HAFAA 62 GI GK A ITGA GIG AR L S+GA + D + L++ + L R AF A Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 63 DVTSVESLAALHDKVQEAVGDIDILVQSAGITGAQGLFHEIDDEGWTNTIEVDLMGPVRL 122 DV ++ + +++ +G IDILV AG+ GL H + DE W T V+ G Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 123 VKRFLPSLRKGGWGRIVFLASEDAVQPYDDELPYCAAKAGILALSKGLSRSYAKEGLLVN 182 + + G IV + S A P Y ++KA + +K L A+ + N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 183 AVSPAFIHTPMTDAMMEKRADQLGTSTDDAIESFLDEERPYMELKRRGEPAEVANVVAFL 242 VSP T M ++ AD+ G + I+ L+ + + LK+ +P+++A+ V FL Sbjct: 184 IVSPGSTETDMQWSLW---ADENG--AEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 243 CSDLASFVNGSNYRVDSGS 261 S A + N VD G+ Sbjct: 239 VSGQAGHITMHNLCVDGGA 257
>PF06580#Sensor histidine kinase Length = 349 Score = 36.0 bits (83), Expect = 2e-04 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 16/92 (17%) Query: 316 NAMRHG----EPGGRIRLRETWRTADVVLEVENPVALRGPAPDHVDPLGLGALRVGTGVE 371 N ++HG GG+I L+ T V LEVEN G GTG++ Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENT----GSLALKNTKES-----TGTGLQ 316 Query: 372 GMRARLAAVGGD---LEAEPVDDLFTARARIP 400 +R RL + G ++ A IP Sbjct: 317 NVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.0 bits (135), Expect = 2e-11 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 4/105 (3%) Query: 2 IRIVLVDDQELFRGGVRVALDAQPDLEVVGEAGDGRQGLAVIDEVRPDVVLLDMRMPVMD 61 I++ DD R + AL ++ +V + I D+V+ D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQAL-SRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GLETVRALFDGTRDAPPRVIVLTTFALDRASATAIRGGASGFLLK 106 + + + V+V++ + A GA +L K Sbjct: 62 AFDLLPRI--KKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 33.2 bits (76), Expect = 0.001 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 9/115 (7%) Query: 48 DPYMRGRMNDVPSYVPPFQLDEAMTGSAVGRVVESRSDDLEVGTLVSHSLGWRDVAQGPA 107 + YM+ R D+ + + + G +G S + E +++ L D AQ Sbjct: 121 NEYMKERAADIR------DVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNK 174 Query: 108 AGFRPVPEVPGVASSAHLGVLGLT-GLTAYVGLTRIA-SIQEGDVVFVSGAAGAV 160 + G +S H ++ + + A VG + IQ GD+V V G G V Sbjct: 175 QFVKGFATDIGGRTS-HSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIV 228
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 79.3 bits (195), Expect = 6e-20 Identities = 53/196 (27%), Positives = 75/196 (38%), Gaps = 11/196 (5%) Query: 8 VALVTGATRGIGRAVAEDLGRTHRVIVHGRDRDAVDALAASLPDAVGWAADLAAGGLAD- 66 +A +TGA +GIG AVA L I S A A+ + D Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 67 ---------LVPELDRLDVLVHSAGVIGGDAVAGTPVDEWRRVFEVNVFAVAEVTRVLLP 117 + E+ +D+LV+ AGV+ + +EW F VN V +R + Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 118 ALRAAK-GQVVLVNSGSGFTANPTGGVYAGSKFALRALGDALREEERPHGVRVSSVHPGR 176 + + G +V V S + YA SK A L E + +R + V PG Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 177 VATDMQRELRAKEGGE 192 TDMQ L A E G Sbjct: 190 TETDMQWSLWADENGA 205
>PF04183#IucA / IucC family Length = 580 Score = 477 bits (1229), Expect = e-162 Identities = 152/573 (26%), Positives = 255/573 (44%), Gaps = 30/573 (5%) Query: 236 LRPDVWAAATRHLVRKALAEFAHELLIAPERVDPELPAGAPRRPHDPRRWADYRVASADG 295 + W R LV K L+E +E + E + Y + Sbjct: 1 MNHKDWDLVNRRLVAKMLSELEYEQVFHAESQGDDR----------------YCINLPGA 44 Query: 296 RSAYAYRARVLELDHWDVDEASIRRTVEGQPVELDATDLVLDLRDRLGITDEVLPVYLDE 355 + + + A +D ++R + A L++ L+ L ++D + ++ + Sbjct: 45 Q--WRFIAERGIWGWLWIDAQTLRC----ADEPVLAQTLLMQLKQVLSMSDATVAEHMQD 98 Query: 356 IQSTLSA-AAFARLRDVPDARGLLTASYAEVESTMDEGHPCFVATNGRIGFDLDDHDRYA 414 + +TL + R A L+ + ++ + GHP FV GR G+ + +RYA Sbjct: 99 LYATLLGDLQLLKARRGLSASDLINLNADRLQCLL-SGHPKFVFNKGRRGWGKEALERYA 157 Query: 415 PEAGADVRILWLAVHERLARFTAIEGLDREAFLDAELGASARARFRARMESLGIDPAERV 474 PE R+ WLAV + +D L A + ARF + G+D + Sbjct: 158 PEYANTFRLHWLAVKREHMIWRCDNEMDIHQLLTAAMDPQEFARFSQVWQENGLDH-NWL 216 Query: 475 LVPVHPWQWENVVTVTFAGLVARRDILLLGTGDDEYGAQQSIRTWANRTTPERCYVKTSL 534 +PVHPWQW+ + F A ++ LG D++ AQQS+RT N + +K L Sbjct: 217 PLPVHPWQWQQKIATDFIADFAEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPL 276 Query: 535 SILNMGFTRGLSPAYMAVTPAINGWVHALVTGDAEFDRLGFGVLREVAAVGVRDERVESA 594 +I N RG+ Y+A P + W+ + DA + G +L E AA V E + Sbjct: 277 TIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAAL 336 Query: 595 LPPGHSHGKMLSALWRESPVPGLAEGERLMSMTSLLHVDAHGDTVLGALIDASGIGAAAW 654 + + +ML +WRE+P L E + M +L+ D + + GA ID SG+ A W Sbjct: 337 ARAPYRYQEMLGVIWRENPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLDAETW 396 Query: 655 LRRWLDAYLVPLAHALIAHDLAFMPHGENVILVLRDHVVVRVLMKDIAEEVAL----FDM 710 L + +VPL H L + +A + HG+N+ L +++ V RVL+KD ++ L F Sbjct: 397 LTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPE 456 Query: 711 ERELPEDVRRIRMEIPEEERTLTVFTDVMDGFLRFAAALLEDRDDLGPEGLWRVAAEALA 770 LP++VR + + + + T LRF + L+ R + +++ A L+ Sbjct: 457 MDSLPQEVRDVTSRLSADYLIHDLQTGHFVTVLRFISPLM-VRLGVPERRFYQLLAAVLS 515 Query: 771 DHERAHPELAERFARFDLFAPSFDRSCLNRLQL 803 D+ + HP+++ERFA F LF P R LN ++L Sbjct: 516 DYMKKHPQMSERFALFSLFRPQIIRVVLNPVKL 548
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 29.3 bits (65), Expect = 0.030 Identities = 16/49 (32%), Positives = 24/49 (48%) Query: 172 GVVHSSGYLGAKAALQERDAITVVGSGQSAAEIYRDLLEDVDSRGYRLD 220 GV+ G L A A+ VG+ A ++Y ED+ +RGY+ D Sbjct: 66 GVLAGVGKLARLGAKFSTRAVPYVGTALLAHDVYETFKEDIQARGYQYD 114
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 91.8 bits (228), Expect = 3e-23 Identities = 69/359 (19%), Positives = 121/359 (33%), Gaps = 71/359 (19%) Query: 1 MIVLVTGASGMLGRAVAERLAAAGHAVRAF---------QRQPSGLAASGTEPVPGSVVD 51 M LVTGA+G +G V++RL AGH V + + L Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP----GFQF 56 Query: 52 LRGSVTDQASVARAVD--GVDAVVHLAAKVSLA---GDPDDFRAVNVEGTRGLLRAARAA 106 + + D+ + + V ++++ +P + N+ G +L R Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 107 GVTRFVHVSSPSVAHTGLSITGDGAGPAD-PVRARGDYARTKAEGELIALAADDP-AMRV 164 + ++ SS SV + D PV YA TK EL+A + Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSL---YAATKKANELMAHTYSHLYGLPA 173 Query: 165 LAVRPHLVWGP-GDTQL-VARIVDRASRGR-LPLLGHGAALIDTVYRDNAADAIVAAL-- 219 +R V+GP G + + + G+ + + +G D Y D+ A+AI+ Sbjct: 174 TGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 220 --------------AAADTAHGRAYVVTNGEPRPVAELLAGMCRAAGVPAPRIRVPAALA 265 AA A R Y + N P + + + + A G+ A + +P Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQP- 292 Query: 266 RAAGGAVERVWAVRPGSDEPPMTRFLAEQLSTAHWFDQRETRRALGWTPAVSLDEGFER 324 G V A D + +G+TP ++ +G + Sbjct: 293 ----GDVLETSA------------------------DTKALYEVIGFTPETTVKDGVKN 323
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 30.3 bits (68), Expect = 0.016 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 221 AGLQPGDTIVSIDGSPVTAWDQVTSTVQASAG-KELDVVVERGGARQ 266 GLQ D V+++G + +Q ++ A + VER G RQ Sbjct: 216 VGLQDNDMAVALNGLDLRDAEQAKKAMERMADVHNFTLTVERDGQRQ 262
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 42.4 bits (99), Expect = 3e-06 Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 27/182 (14%) Query: 74 HPGLVTLFDVGDDVVADRVLAFIVMEIVDG-------STLADRMKEGPLPGP----EVAR 122 HP L + + +R ++M+ VDG TLAD K+G + + Sbjct: 190 HPNLANVHGMAVVPYGNRKEEALLMDEVDGWRCSDTLRTLADSWKQGKINSEAYWGTIKF 249 Query: 123 IGGILSDALGYIHRRGVVHRDVKPANVLLARPEDDDEPAVAKLTDFGIARLVDGTRLTST 182 I L D ++ + GVVH D+KP NV+ R EP V L G S Sbjct: 250 IAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRAS--GEPVVIDL----------GLHSRSG 297 Query: 183 GSIIG-TVSYLSPEQALGEEVGAP--TDVYALGLVLLECLTGRRTFPGTAAESTMARVVR 239 G T S+ +PE +G +GA +DV+ + LL C+ G P + + Sbjct: 298 EQPKGFTESFKAPELGVG-NLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRFITS 356 Query: 240 DP 241 +P Sbjct: 357 EP 358
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 36.6 bits (84), Expect = 4e-05 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 115 DAAETTPTPSPSPSASPSPSPSPSRTASPSPSPSPSPSRTATPSPPATPSPAPGGGNGNG 174 +A P P SP+ +P+ +P+P+ P+P P P +P P G + Sbjct: 321 EAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQP---GTRPDS 377 Query: 175 DGGPGNGNGGGNGDGGAGDPG 195 P NG + G+ G Sbjct: 378 PAVPDRPNGRHRKERKEGEDG 398
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 165 bits (419), Expect = 1e-49 Identities = 89/282 (31%), Positives = 131/282 (46%), Gaps = 19/282 (6%) Query: 56 EQAWQTTRGEGVKVAVIDTGVDASVADLRGAVAGGTDVSGVGSADGTKPVGASSEHGTMV 115 W TRG GVKVAV+DTG DA DL+ + GG + + D + + HGT V Sbjct: 32 PAVWNQTRGRGVKVAVLDTGCDADHPDLKARIIGGRNFTDDDEGD-PEIFKDYNGHGTHV 90 Query: 116 ASLLAGRGTGTGSGVIGVAPAASVLSVSVALGGPTPGARDEDAQIADAVRWAVDNGASVI 175 A +A T +GV+GVAP A +L + V L G D I + +A++ +I Sbjct: 91 AGTIAA--TENENGVVGVAPEADLLIIKV-LNKQGSGQYD---WIIQGIYYAIEQKVDII 144 Query: 176 NMSLTRNSLDWPESWDRAFLYAYEHDVVVVAAAGNRGSG---TTEVGAPATIPGVLAVAG 232 +MSL A A ++V+ AAGN G G T E+G P V++V Sbjct: 145 SMSLGGPEDV--PELHEAVKKAVASQILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGA 202 Query: 233 VDRSGAASFDASSQGITIAVAAPSEQLVGVEPGGRYVQWSGTSGAAPLVSGVVALVRAAH 292 ++ AS + S+ + + AP E ++ PGG+Y +SGTS A P V+G +AL++ Sbjct: 203 INFDRHAS-EFSNSNNEVDLVAPGEDILSTVPGGKYATFSGTSMATPHVAGALALIKQLA 261 Query: 293 PELKADDVVERVLATARQK------GQPEIYGRGLVDAAAAV 328 D+ E L K P++ G GL+ A Sbjct: 262 NASFERDLTEPELYAQLIKRTIPLGNSPKMEGNGLLYLTAVE 303
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 27.9 bits (62), Expect = 0.025 Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 5/51 (9%) Query: 68 YLEQRQQLSSLQSAVDAQKGTIAQLQDQRARYDD-----PAFLKAQVRDRL 113 LEQ + + + K + Q++ + + K ++ D+L Sbjct: 254 VLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKL 304
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 37.7 bits (87), Expect = 2e-05 Identities = 15/78 (19%), Positives = 26/78 (33%) Query: 8 RRQDLLAHILDHLRAHPLQSVTFRGLADALGESTFVLVYHFGSKERLLEAAMDAIDHRQA 67 RQ +L L + S + +A A G + + +HF K L + + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 68 EMVEGDPRRIRPDELREW 85 E+ + D L Sbjct: 72 ELELEYQAKFPGDPLSVL 89
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 33.2 bits (75), Expect = 0.002 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%) Query: 79 AGGLNSVSRALVPAIAAVGGVV-----VPALVYLAITAGSGLERGWPVPTATDIAFALGV 133 A G S+++A+ AIA +G V+ V A+ + ++T S W T + +ALG+ Sbjct: 271 AQGAASLAQAISDAIAVLGRVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGM 330 Query: 134 LAVFGRGLPAAVRVFLLALA 153 A GLP +V + +A A Sbjct: 331 DAA-KLGLPPSVNLNAVAKA 349
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 40.7 bits (95), Expect = 6e-07 Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 103 VVVDPAHRGTGLARVLMAELERVARERGARRLILQTGDRQPDAIQLYATAGW 154 + V +R G+ L+ + A+E L+L+T D A YA + Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 27.7 bits (61), Expect = 0.021 Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 8/102 (7%) Query: 6 TPLTTRRLRAGIAGLGLVLGLALAGCSSPAADDAATPTPSASASAEAASPTPEATAEGDA 65 PL A I GLG V G A D P+A+ + EA A A A Sbjct: 268 APLPAEGKFAVIGGLGSVAGFEKNTRE--AVDRWIQENPNAAETVEAVFNV--AAAAKVA 323 Query: 66 GSGDAAAPGSREAIAAKTRDIACGLKDKSTLEESDVQAFRDL 107 AA PG AA + D A K K L +S Q +++ Sbjct: 324 KLAKAAKPGK----AAVSGDFADSYKKKLALSDSARQLYQNA 361
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.4 bits (66), Expect = 0.022 Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 197 IIARVPLASGLLSGRYTADTTFAETDHRNFNRGGAAFDVG 236 I+A + A+G ++G Y AD T + R+F A F G Sbjct: 104 IVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFG 143
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 29.3 bits (65), Expect = 0.009 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Query: 36 PRFDPAFQRASGPAPAPHPRTDPQAGADVPGPTSTTGNPETHETPA--PSVPRAADRP 91 P PA A+ PAP +P T P D + NP+T P P P DRP Sbjct: 329 PEVSPAENPANNPAPNENPGTRPNPEPD--PDLNPDANPDTDGQPGTRPDSPAVPDRP 384
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 64.3 bits (156), Expect = 1e-13 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 40/193 (20%) Query: 95 ATTAQKAGVVTIDSALTYENAAGAGTGIILSSDGTILTNNHVVSGATSIRVTVEST---- 150 T A V I +G + T+LTN HVV +++ Sbjct: 82 TTNGHYAPVTYIQVEAPTGTFIASGVVV---GKDTLLTNKHVVDATHGDPHALKAFPSAI 138 Query: 151 -------GKAYVGKVVGTDATNDVAVLKLED-------ASGLTPAKLDTDG-VQVGEAVT 195 G ++ D+A++K + PA + + QV + +T Sbjct: 139 NQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNIT 198 Query: 196 GVGNAGG--TGTLTAATGQVTALGQTITTQSEGTAAGETLTDLIQTDAAIVSGDSGGPLV 253 G G T+ + G++T L +Q D + G+SG P+ Sbjct: 199 VTGYPGDKPVATMWESKGKITYLKGEA----------------MQYDLSTTGGNSGSPVF 242 Query: 254 DAEGEVVGIDTAA 266 + + EV+GI Sbjct: 243 NEKNEVIGIHWGG 255
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.006 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 10/152 (6%) Query: 66 QSLTGANSELIGFANYFEAFGDSQMWRSLGNTVVFTIASTIPLLVVGLVLALLVNLGLPG 125 Q + L GF F + S S+ +F IA ++ LV+ + Sbjct: 16 QGIGWGVYTLTGFG--FASLYGSPKLHSM----IFNIAISLMGLVLTHAYRSFIK-RQGW 68 Query: 126 QWLWRLAFFLPFLLASTVVSLFWLWMYNPQLGVVNAIAGAFGLPQPAWLQDSNLAMTSVV 185 L L L A V+ + W ++ N + + A P L + + +VV Sbjct: 69 LKLNMGQIILRVLPACVVIGMVW-FVANTSIWRLLAFINT--KPVAFTLPLALSIIFNVV 125 Query: 186 VTTVWWTVGFNFLIYLAALQNIPDQQYEAAAL 217 V T W++ + + + Q++ A++ Sbjct: 126 VVTFMWSLLYFGWHFFKNYKQAEIDQWKMASM 157
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 41.3 bits (96), Expect = 6e-06 Identities = 54/232 (23%), Positives = 81/232 (34%), Gaps = 27/232 (11%) Query: 97 KLAMASVGGRAPDVAIMHAARVPGFAPGGLLDPWDTDRLAELGVTQADFEPRVWDKGVVD 156 K + G PD+ R G+A GLL D+ Q P WD + Sbjct: 72 KFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK-----AFQDKLYPFTWDAVRYN 126 Query: 157 GKLYSIALDSHPFILMYNTDVAAQAGVLGGDGQLEEITSPDRFLEVMRAMQAVTGEHALS 216 GKL + + L+YN D+ EEI + D+ L+ G+ AL Sbjct: 127 GKLIAYPIAVEALSLIYNKDLLPNP-----PKTWEEIPALDKELKA-------KGKSALM 174 Query: 217 YGYLGDGAQMWRLF-----YTFYKQMGGDMELPTGGEVVYDRDKAVASLEYIQTLLDGTI 271 + L + W L Y F K G ++ G D A A L ++ L+ Sbjct: 175 FN-LQEPYFTWPLIAADGGYAF-KYENGKYDIKDVG---VDNAGAKAGLTFLVDLIKNKH 229 Query: 272 ATPSGDAGTAIAEFAGAKSGAIVTGVWELPTFQKAKVPFDAMPIPNLFGTPA 323 D A A F ++ + G W +KV + +P G P+ Sbjct: 230 MNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS 281
>cloacin#Cloacin signature. Length = 551 Score = 33.5 bits (76), Expect = 0.002 Identities = 22/91 (24%), Positives = 30/91 (32%) Query: 368 GDTGGLVMSDWVTPEQAKLDAMAPILHPATGGSGSGSGSSSGSGSSSGSGSSSGSTPAPQ 427 G S W + +H G G + SG SG+G + + AP Sbjct: 29 VGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPV 88 Query: 428 PQPQPAPSTSGAVTATWQPGGSWSSGYVADL 458 PA ST GA S +AD+ Sbjct: 89 AFGFPALSTPGAGGLAVSISAGALSAAIADI 119
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 28.6 bits (63), Expect = 0.043 Identities = 36/124 (29%), Positives = 48/124 (38%), Gaps = 9/124 (7%) Query: 42 TLRILAETAEVPDAVRAETNARSVVEQQRA-LRRAAEEAEAAARARDAAAQRALPKVAPV 100 +L+I T A A EQ A +R AEE A AA A+P V Sbjct: 199 SLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSV 258 Query: 101 SATSPSAATRLRRSRLAATAILALALVGVIAGIAQVAGAGAWTLLVISSLATFASLAFLQ 160 AT AA R A LA A+ IA + +V + + V FASL + Sbjct: 259 VAT---AAGRGLIQVAQGAASLAQAISDAIAVLGRVLASAPSVMAV-----GFASLTYSS 310 Query: 161 RMSQ 164 R ++ Sbjct: 311 RTAE 314
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 50.6 bits (121), Expect = 5e-09 Identities = 62/278 (22%), Positives = 100/278 (35%), Gaps = 10/278 (3%) Query: 74 GLLVSVFAVAVVVSSAPLAALTRRVPRHALLLAVLAVFATSNLLTALAPTFELVTATRVL 133 G+L++++A+ + L AL+ R R +LL LA A + A AP ++ R++ Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV 105 Query: 134 GGLAHGLFWAVVGAYSAHLVPPALIGRAVALTVGGGSLAFVLGVPVGTAAGQAFGWRAAF 193 G+ AV GAY A + R V G +G G F A F Sbjct: 106 AGITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPF 163 Query: 194 AGIGVLTLLGIVLVWRFLPAVGRPERAAPVDAPSGGRVGIRQRMAGQGLGGVLLVCLTAM 253 L L + LP + ER R + ++ V Sbjct: 164 FAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFI-- 221 Query: 254 VIMIGHYGFYTYVDPFVTRVMGIPEQQLSAMLFGYGIAGAVGLLVAGTVFASR--PQLGV 311 + ++G +V F + L +GI ++ + A+R + + Sbjct: 222 MQLVGQVPAALWV-IFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRAL 280 Query: 312 LAGLAAAAAGVSALAFVPGLWAVAIPGFLLWGLAFGAI 349 + G+ A G LAF W +A P +L LA G I Sbjct: 281 MLGMIADGTGYILLAFATRGW-MAFPIMVL--LASGGI 315
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 36.1 bits (83), Expect = 9e-05 Identities = 59/258 (22%), Positives = 98/258 (37%), Gaps = 23/258 (8%) Query: 29 WIAT-RRNLIKIKR-LPDILVFTLIQPIMFVLLFSFVYAGAID-IPGSDYKEFIMAGIFA 85 WIA RRN I K+ L+ L +P++++ + + G Y F+ AG+ A Sbjct: 16 WIAVWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAAGMVA 75 Query: 86 QTVVFGSTYSG--SAMANDLKDGIIDRFRTLPMSPSAVLVGR----TNGDLLINVFSMVV 139 + + +T+ +A + + +++G L VV Sbjct: 76 TSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVV 135 Query: 140 MLATGFVVGWRVRSSLLEALAGVALLLLFAYALSWVMAFLGMSVRSPEVINNASFLVLFP 199 A G+ SLL AL +AL L +L V+ L S + LV+ P Sbjct: 136 AAALGYTQWL----SLLYALPVIALTGLAFASLGMVVTALA---PSYDYFIFYQTLVITP 188 Query: 200 LTFISNAFVPSDSLPTPLRVFAEYNPVSSVVLAARQLFGNVPAGTPVPDAWTLQNPVATT 259 + F+S A P D LP + A + P+S + L + G PV D V Sbjct: 189 ILFLSGAVFPVDQLPIVFQTAARFLPLSHSI----DLIRPIMLGHPVVDVCQH---VGAL 241 Query: 260 LIWAGVLLVVAVPLAVRK 277 I+ + ++ L R+ Sbjct: 242 CIYIVIPFFLSTALLRRR 259
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 107 bits (269), Expect = 3e-27 Identities = 54/302 (17%), Positives = 85/302 (28%), Gaps = 86/302 (28%) Query: 179 PDRIYHPTSTPAADFLGLTGADGVWAKTGGQEEAGEGAVIGVIDTGIAPENPAFAGEPLG 238 + + A VW +T G G + V+DTG ++P Sbjct: 11 QVIKQEQQVNEIPRGVEMIQAPAVWNQT-----RGRGVKVAVLDTGCDADHPDLKA---- 61 Query: 239 TTAGAEPYRDGSAIAYAKGDGTTFRGACQTGEQFTAADCSTKIVGARYFVTGFGQENIGT 298 +I+G R F Sbjct: 62 -----------------------------------------RIIGGRNFTDD-------- 72 Query: 299 AATGEYVSPRDGDGHGSHTASTAAGEADVTATIDGNDLGEISGVAPASKIAAYKVCWSGP 358 G+ +D +GHG+H A T A + + GVAP + + KV Sbjct: 73 -DEGDPEIFKDYNGHGTHVAGTIAA---------TENENGVVGVAPEADLLIIKVLNK-- 120 Query: 359 DPAVQTDDGCAGADLVAAIEQATKDGVDVINYSIGGGSARTTFSATDSAFLGAASAGIFV 418 ++ I A + VD+I+ S+GG A A ++ I V Sbjct: 121 ------QGSGQYDWIIQGIYYAIEQKVDIISMSLGGPEDVPEL---HEAVKKAVASQILV 171 Query: 419 AASAGNSGPGASTLD-----NASPWITTVAASTVAGNFEATAQLGDGQAFA--GSSITVT 471 +AGN G G D + +V A + + + G I T Sbjct: 172 MCAAGNEGDGDDRTDELGYPGCYNEVISVGAINFDRHASEFSNSNNEVDLVAPGEDILST 231 Query: 472 EP 473 P Sbjct: 232 VP 233 Score = 67.6 bits (165), Expect = 6e-14 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 28/142 (19%) Query: 580 DNTTGVSAPTP--QVAGFSSRGPVLADGSDILKPDVTAPGVSIIAATNNAEGEDPTFALL 637 + V A + FS+ + D+ APG I++ +A Sbjct: 195 NEVISVGAINFDRHASEFSNSNN---------EVDLVAPGEDILSTVPGG-----KYATF 240 Query: 638 SGTSMAAPHVAGLALLYLG-----EHPKATPAEIKSAMMTTAYDTVDEDGGKVTDPFTQG 692 SGTSMA PHVAG L T E+ + ++ + P +G Sbjct: 241 SGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGNS-------PKMEG 293 Query: 693 AGHVDARRYLDPGLLYLNDRAD 714 G + + ++ R Sbjct: 294 NGLLYLTAVEELSRIFDTQRVA 315
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 110 bits (277), Expect = 3e-28 Identities = 57/297 (19%), Positives = 86/297 (28%), Gaps = 80/297 (26%) Query: 147 LSVEPDRTLHTTSTPDSRFLGLEGDDGLWSKVGGSDKAGEGTVIGVLDTGIAPDNPSFAG 206 + R + + +W++ G G + VLDTG D+P Sbjct: 7 IIPYQVIKQEQQVNEIPRGVEMIQAPAVWNQT-----RGRGVKVAVLDTGCDADHPDLKA 61 Query: 207 KPLGSTPGADPYLDGSRIDFRKGDGTVFHGTCETGDGFTADDCSTKIVGARSFEAGRAAS 266 + I+G R+F Sbjct: 62 R---------------------------------------------IIGGRNFTDDD--E 74 Query: 267 GDPNGPQEKLSPLDTAGHGSHTASTAAGDAGVAATAGTIQETIAGIAPAAKIAAYKVCWS 326 GDP D GHG+H A T A + + G+AP A + KV Sbjct: 75 GDPE------IFKDYNGHGTHVAGTIAATEN--------ENGVVGVAPEADLLIIKVLNK 120 Query: 327 GPDPSKETDDGCELSDIVAGIEQATADGVDVLNMSLGGPGKTEDAFQRALLGAADAGIFV 386 + I+ GI A VD+++MSLGGP A+ A + I V Sbjct: 121 --------QGSGQYDWIIQGIYYAIEQKVDIISMSLGGPEDV-PELHEAVKKAVASQILV 171 Query: 387 AASAGNSGPDAGTVA-----NTEPWVTTVAASSVPRNYSGTVTLGSGAKFAGASATV 438 +AGN G V +V A + R+ S + + Sbjct: 172 MCAAGNEGDGDDRTDELGYPGCYNEVISVGAINFDRHASEFSNSNNEVDLVAPGEDI 228 Score = 57.2 bits (138), Expect = 1e-10 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 26/123 (21%) Query: 559 QVAGFSSRGASEDVDGGDTIKPDITAPGVGILAAISDDGGKPAFAPYSGTSMSSPHIAGF 618 + FS+ D+ APG IL+ + +A +SGTSM++PH+AG Sbjct: 208 HASEFSNSNNE----------VDLVAPGEDILSTVPGGK----YATFSGTSMATPHVAGA 253 Query: 619 GLVYLG-----VHPKASPAEVKSALMTTATDTLDANGKPATDPFAQGAGQIAPDRFLNPG 673 + + E+ + L+ P +G G + Sbjct: 254 LALIKQLANASFERDLTEPELYAQLIKRTIPL-------GNSPKMEGNGLLYLTAVEELS 306 Query: 674 LYY 676 + Sbjct: 307 RIF 309
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.9 bits (98), Expect = 2e-06 Identities = 18/57 (31%), Positives = 28/57 (49%) Query: 71 ADVQTIAVADGSRGRGIGRALLTRLVAEAHVRGAREVLLEVRADNPVAQALYSSLGF 127 A ++ IAVA R +G+G ALL + + A ++LE + N A Y+ F Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 278 bits (713), Expect = 3e-91 Identities = 109/370 (29%), Positives = 175/370 (47%), Gaps = 25/370 (6%) Query: 17 RAVVDLDAIRHNVRTLAALAAPARTMVAVKADAYGHGALQVARAALEAGAESLAVLDVAS 76 +A +DL A++ N+ + A AR VKA+AYGHG ++ A +L L+ Sbjct: 6 QASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLNLE--E 63 Query: 77 AVELRRSGITARLL---AWLHGVDTDFRVAVENGIDLGVSALWELERIAAAGRATGIRAR 133 A+ LR G +L + H D + ++ + V + W+L+ A Sbjct: 64 AITLRERGWKGPILMLEGFFHA--QDLEIYDQHRLTTCVHSNWQLK--ALQNARLKAPLD 119 Query: 134 VHLKADTGLSRNGATPELWPDLVRAAVAADAAGELTLHALWSHLADA-SPEDDDAALARF 192 ++LK ++G++R G P+ + + A GE+TL SH A+A P+ A+AR Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTL---MSHFAEAEHPDGISGAMARI 176 Query: 193 HEAVRVAEELGARPVEKHLAASSAGIRLPAARFDMVRFGIAVYGISPFDDRS-GRDLGLI 251 +A E L + L+ S+A + P A FD VR GI +YG SP + GL Sbjct: 177 EQAA---EGL---ECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLR 230 Query: 252 PAMTLEADVVSVKRVEAGHGVSYGLDHRTAGPSTLVLVPLGYADGIPRIAAPRASVLLNG 311 P MTL ++++ V+ ++AG V YG + + +V GYADG PR A VL++G Sbjct: 231 PVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDG 290 Query: 312 RRFPVAGRIAMDQLVLDVGDLP-VEVGDTAVILGPGDRGEPTAEEWAGWAETIGDEIVTR 370 R G ++MD L +D+ P +G + G E ++ A A T+G E++ Sbjct: 291 VRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGK----EIKIDDVAAAAGTVGYELMCA 346 Query: 371 VGPRVDRVHL 380 + RV V + Sbjct: 347 LALRVPVVTV 356
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 284 bits (728), Expect = 9e-96 Identities = 105/369 (28%), Positives = 165/369 (44%), Gaps = 24/369 (6%) Query: 16 EARIDTGAISANVRALRAATGAPLVMAVVKADGYGHGAVASARAALAGGADRLGVVDVRE 75 +A +D A+ N+ +R A V +VVKA+ YGHG A A D ++++ E Sbjct: 6 QASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGA--TDGFALLNLEE 63 Query: 76 ALALRAAGIDAPVLT-WMHAPGADFATAIEADVDLGLNSLRQVREVAEAARRVGRTAEVH 134 A+ LR G P+L D + + ++S Q++ + A R+ +++ Sbjct: 64 AITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNA--RLKAPLDIY 121 Query: 135 LKVDTGLGRNGVTPAEWPAVVAEVQALVAEGRIHLGGVFSHLANAGREED-RAQVRAFHQ 193 LKV++G+ R G P V+ Q L A + + SH A A + + Q Sbjct: 122 LKVNSGMNRLGFQPDR---VLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQ 178 Query: 194 SVDVVRAAGLEPGIRHLAATAGALRVPEARLDMVRLGIGIYGISPLDGV-TSADLGLVPA 252 + + + R L+ +A L PEA D VR GI +YG SP A+ GL P Sbjct: 179 AAEGL------ECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPV 232 Query: 253 MTLVGSVVAVKRVPADTGVSYGYTYRTSSATTLALVSLGFADGVPRLASNRAPVAIHGAR 312 MTL ++ V+ + A V YG Y + +V+ G+ADG PR A PV + G R Sbjct: 233 MTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVR 292 Query: 313 FRVSGRIAMDQFVVDVGDGVVDGIPVAVGDDAVLFGDPATGAPSVEEWAEATGTIGYEIV 372 G ++MD VD+ +G L+G +++ A A GT+GYE++ Sbjct: 293 TMTVGTVSMDMLAVDLTPCP----QAGIGTPVELWGK----EIKIDDVAAAAGTVGYELM 344 Query: 373 ARVAGRVTR 381 +A RV Sbjct: 345 CALALRVPV 353
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 50.2 bits (120), Expect = 2e-08 Identities = 36/177 (20%), Positives = 60/177 (33%), Gaps = 17/177 (9%) Query: 506 ASSERDQGLIIPIILAIVFVILGLLLRSLVAPVLLIASVLATFFASLGAANVLFQQVLGF 565 S ++ I +VF+ L L S PV ++ V L AA LF Q Sbjct: 866 RLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAAT-LFNQKNDV 924 Query: 566 PAFDANVVLFAFLFLVALGVDYNIFLVTRAREERRLHGTREGMVRALASTGGVITSAGIL 625 + L + L I +V A++ G V + IL Sbjct: 925 YF------MVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG---VVEATLMAVRMRLRPIL 975 Query: 626 LAAVFAVLGVLPVVALTQIGV-------IVCIGVLLDTLVVRTLLVPALVFLLGDRF 675 + ++ +LGVLP+ G I +G ++ ++ VP ++ F Sbjct: 976 MTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCF 1032 Score = 41.4 bits (97), Expect = 1e-05 Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 23/221 (10%) Query: 117 LVAVPLDASAVADDVAGTAATLRTTAADGLPDGLVAQLTGPVGFQADISNAFAGADFRLL 176 L ++ + A +G A L A LP G+ TG + N L+ Sbjct: 821 LPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAP----ALV 876 Query: 177 LVTVLVVAVLLIVTYRS-----PVLWIVPLVVVGAADGLARVVVTALADPLGITIDASIG 231 ++ +VV + L Y S V+ +VPL +VG L + + +G Sbjct: 877 AISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGV---LLAATLFNQK----NDVYFMVG 929 Query: 232 GILSVLVFGAGTNYALLLVARYREELTRQ-EDRHAAMLTAVTSAGPAIAASGGTVALSLI 290 + G A+L+V ++ + ++ + A L AV I + L ++ Sbjct: 930 LLT---TIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVL 986 Query: 291 TLLLAELSGN---RALGFACAIGVLIAIAAALLVLPAALVV 328 L ++ +G+ A+G G++ A A+ +P VV Sbjct: 987 PLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVV 1027
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (269), Expect = 2e-30 Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 15/252 (5%) Query: 8 DGRTAIVTGAGSGIGRASALRFAREGARVIAADVSAERLDALV------AEHPDLELVPV 61 +G+ A +TGA GIG A A A +GA + A D + E+L+ +V A H + Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE-AFPAD 65 Query: 62 VGDITTEDGVHAIVAAADGRVDVLANVAGIMDGFLPAAEVDDRTWDLVFAVNVTAVMRLT 121 V D D + A + G +D+L NVAG++ + D W+ F+VN T V + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLR-PGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 122 RAVLPLMVEAGKGAIVNIASEAALRGSAAGLAYTASKHAVAGMTKNTAVLYAGQGIRVNA 181 R+V M++ G+IV + S A + AY +SK A TK + A IR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 182 VAPGATNTAIEAPMRSERAG---RVLGPIMQTIVPAPV----EADEMANSVIWLASDQSS 234 V+PG+T T ++ + ++ G + G + P+ + ++A++V++L S Q+ Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 235 NVTGVILASDGG 246 ++T L DGG Sbjct: 245 HITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 3e-12 Identities = 26/116 (22%), Positives = 46/116 (39%) Query: 21 QDLARVAIGLFAERGYDAVSMADIAEAAGVGRRSLFRYFPSKADLVWGGADVVGAELERL 80 Q + VA+ LF+++G + S+ +IA+AAGV R +++ +F K+DL ++ + + L Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGEL 73 Query: 81 LAEGPGDRPLGDAYADAFVAALGPRFADMGMTRVRLRIIDAHPDLHSRSSPRITAA 136 E P + R L I H + A Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129