PredictBias

		>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein

		           signature.

		          Length = 170

		

		 Score =  207 bits (528), Expect = 1e-71

		 Identities = 80/161 (49%), Positives = 113/161 (70%), Gaps = 4/161 (2%)

		

		Query: 4   VANNEQ--QGPQFNIQRVYTKDISFETPNSPAVFQKEWNPEVKLDLDTRSNKLSDDVYEV 61

		            A + Q  Q P   IQR+Y KD+SFE PN P +FQ++W P++  DL T + ++ DD+YEV

		Sbjct: 8   NAADTQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQVGDDLYEV 67

		

		Query: 62  VLSLTVTA--KNGEETAFLCEVQQAGIFAIAGLTEQQLAHSLGAYCPNVLFPYAREAIGS 119

		            L+++V    ++  + AF+CEV+QAG+F I+GL E Q+AH L + CPN+LFPYARE + S

		Sbjct: 68  CLNISVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPYARELVSS 127

		

		Query: 120 LVSRGTFPQLNLAPVNFDALFAQYVQQRQAAAADAPAEEAN 160

		           LV+RGTFP LNL+PVNFDALF  Y+Q+++ A      E  +

		Sbjct: 128 LVNRGTFPALNLSPVNFDALFMDYLQRQEQAEQTTEEENKD 168

		

		

		>DNABINDNGFIS#DNA-binding protein FIS signature.

		          Length = 98

		

		 Score = 34.6 bits (79), Expect = 1e-04

		 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 18/104 (17%)

		

		Query: 249 NPGEAISINLLPGEDVRAKIQQALEASPKQSLRNALSQWLPKRLVEVLFDESLLNKALNQ 308

		              + ++++ +  +D     Q+ L  S KQ+L+N  +Q   + + +           L +

		Sbjct: 6   VNSDVLTVSTVNSQD--QVTQKPLRDSVKQALKNYFAQLNGQDVND-----------LYE 52

		

		Query: 309 LVHAEREQLALDLESWTLVMNGTEGYRTAEVTLGGIDTDELSSK 352

		           LV AE EQ  LD     +VM  T G +T    + GI+   L  K

		Sbjct: 53  LVLAEVEQPLLD-----MVMQYTRGNQTRAALMMGINRGTLRKK 91

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 44.0 bits (104), Expect = 5e-07

		 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 17/152 (11%)

		

		Query: 45  VVVALPVAQGSIVTKGTVLVQLDDTQQKSHVAKALADVAQATANYEKLLKGAREEEIAAA 104

		           +V  + V +G  V KG VL++L     ++   K  + + QA            +      

		Sbjct: 106 IVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE---------QTRYQIL 156

		

		Query: 105 RAAVAGTRARLQESEANYRRIASMAKDNLASKADLDRALASRDADAANLESAQENLLELV 164

		             ++   +    +            ++ L   + +    ++        E   +      

		Sbjct: 157 SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLD------ 210

		

		Query: 165 SGSREEDIRFALANLQASEAVLLGEQKKLDDL 196

		              +  +    LA +   E +   E+ +LDD 

		Sbjct: 211 --KKRAERLTVLARINRYENLSRVEKSRLDDF 240

		

		

		>ANTHRAXTOXNA#Anthrax toxin LF subunit signature.

		          Length = 800

		

		 Score = 29.3 bits (65), Expect = 0.025

		 Identities = 14/34 (41%), Positives = 20/34 (58%)

		

		Query: 112 EQTARIQELLNTYGLEQKADQLAGSMSGGQKQRL 145

		           E+   +  LL  YG+E+K D   G++S  QKQ L

		Sbjct: 524 EKQKGVTNLLIKYGIERKPDSTKGTLSNWQKQML 557

		

		

		>ABC2TRNSPORT#ABC-2 type transport system membrane protein

		           signature.

		          Length = 262

		

		 Score = 44.9 bits (106), Expect = 2e-07

		 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 13/161 (8%)

		

		Query: 194 GVILTMTMIMFT----SAAIVRERERGNLEMLITTPIRPIELMLGKII----PYMFIGIV 245

		           G++ T  M   T     AA  R   +   E ++ T +R  +++LG++          G  

		Sbjct: 72  GMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAG 131

		

		Query: 246 QVIIILGLGYSVFDVPINGSLLQLAGATLLFIMASLTLGLVISTIAKSQLQSMQMTIFVL 305

		             ++   LGY+ +      SLL       L  +A  +LG+V++ +A S    +     V+

		Sbjct: 132 IGVVAAALGYTQWL-----SLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVI 186

		

		Query: 306 LPSILLSGFMFPYEGMPIEAQYIAEALPATHFMRLIRGVVL 346

		            P + LSG +FP + +PI  Q  A  LP +H + LIR ++L

		Sbjct: 187 TPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIML 227

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 25.7 bits (56), Expect = 0.028

		 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 10/73 (13%)

		

		Query: 9   DESRFVINVDGAQAVLAYELYEDQTAADSPGRRCNFN------NTYVPPELRGRGLAEKL 62

		            +  +V     A    A+  Y +         R N+N      +  V  + R +G+   L

		Sbjct: 55  MDVSYVEEEGKA----AFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTAL 110

		

		Query: 63  VRRGLKWAKAEGL 75

		           + + ++WAK    

		Sbjct: 111 LHKAIEWAKENHF 123

		

		

		>UREASE#Urea amidohydrolase (urease) protein signature.

		          Length = 570

		

		 Score = 37.4 bits (87), Expect = 1e-04

		 Identities = 14/33 (42%), Positives = 19/33 (57%)

		

		Query: 348 LAGMTRNAAKALGIDDHVGVIEVGMTADFCIWN 380

		           +A  T N A A G+   +G +EVG  AD  +WN

		Sbjct: 406 IAKYTINPAIAHGLSHEIGSLEVGKRADLVLWN 438

		

		

		

		 Score = 34.3 bits (79), Expect = 8e-04

		 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

		

		Query: 23  YGAITDAALAVQDGKIAWVGKRSD---LPEFDVF---GTPIYKGKGGWITPGLIDAHTHL 76

		           +  I  A + ++DG+IA +GK  +    P   +    GT +  G+G  +T G +D+H H 

		Sbjct: 80  HWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHF 139

		

		Query: 77  I 77

		           I

		Sbjct: 140 I 140

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 28.8 bits (64), Expect = 0.005

		 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 8/127 (6%)

		

		Query: 14  TETIELYQANEWSSADKPDLLILALRNS-HTLVTARYEGKLVGIGNAISDGHLVVYYSHM 72

		           T T E +    +   +  D+ +  +            E   +G     S+ +       +

		Sbjct: 36  TYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDI 95

		

		Query: 73  LVHPSLHGKGIGRKMMA-----AMQSVYCGFHQQMLTADGDAVEFYKALGFERAGKTEPM 127

		            V      KG+G  ++      A ++ +CG   +    +  A  FY    F   G  + M

		Sbjct: 96  AVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF-IIGAVDTM 154

		

		Query: 128 WIYAGTE 134

		            +Y+   

		Sbjct: 155 -LYSNFP 160

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 70.2 bits (172), Expect = 2e-16

		 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

		

		Query: 1   MPIAKILLVDDHPALRQGLAQLMSLEESLDVVAQASSGEEAISLAVQYEPDIILLDLNMR 60

		           M  A IL+ DD  A+R  L Q +S     DV    S+           + D+++ D+ M 

		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAG-YDVRI-TSNAATLWRWIAAGDGDLVVTDVVMP 58

		

		Query: 61  GLSGIDTLISLKNAQVKSKVIIFTVSDNESDVVQAIKFNTDGYLLKDSEPEELIEKIHLA 120

		             +  D L  +K A+    V++ +  +     ++A +     YL K  +  ELI  I  A

		Sbjct: 59  DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118

		

		Query: 121 LQ 122

		           L 

		Sbjct: 119 LA 120

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 31.4 bits (71), Expect = 0.008

		 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

		

		Query: 481 IRFSYDLPQHCLSANQEIHLLQIIREGLSNIHRHA---KASEAGVRLS--PKGELIKLDI 535

		           ++F   +    +       L+Q + E   N  +H          + L        + L++

		Sbjct: 240 LQFENQINPAIMDVQVPPMLVQTLVE---NGIKHGIAQLPQGGKILLKGTKDNGTVTLEV 296

		

		Query: 536 WDNGAGLPGTLQTQGHFGLGIMRERVSSLKGQMY 569

		            + G+      +     GL  +RER+  L G   

		Sbjct: 297 ENTGSLALKNTKESTGTGLQNVRERLQMLYGTEA 330

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 50.4 bits (120), Expect = 8e-10

		 Identities = 17/58 (29%), Positives = 31/58 (53%)

		

		Query: 3  SKTLEHILNVSEQLIYKDGVIGFKFCTVAKEAGISTTSLYKFFGNKEDILVALASKSF 60

		           +T +HIL+V+ +L  + GV       +AK AG++  ++Y  F +K D+   +   S 

		Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67

		

		

		>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature.

		          Length = 544

		

		 Score = 28.8 bits (64), Expect = 0.026

		 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

		

		Query: 219 GLTLNSGIYGNTFFLLT---GFHGMHVT-LGTVFLIVLFFRVLKGHFTPDKHF 267

		           G+  NSGI     +LL+     +G+ VT +G   +  +F+R L  + TP  +F

		Sbjct: 457 GVHTNSGIINKAAYLLSQGGVHYGVSVTGIGRDKMGKIFYRALVYYLTPTSNF 509

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 55.1 bits (132), Expect = 7e-10

		 Identities = 40/241 (16%), Positives = 79/241 (32%), Gaps = 13/241 (5%)

		

		Query: 12   KDKSNEEAQA-----VEAAKLEAEKLELEEAEKLELERAEAERLAAEQAETERLAEEARL 66

		               SN E  A            A   E  E      ++        EQ  TE  A+   +

		Sbjct: 1009 SVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREV 1068

		

		Query: 67   AVEQAEAERIESERVEAERHAAEQAEAQRVA---EETAAEQARLAAELAAQAETQRIEAE 123

		            A E     +  ++  E  +  +E  E Q        T  ++ +   E     E  ++ ++

		Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128

		

		Query: 124  RLESEREAAEQAEGQRIEAARLESERVIAEQAEAQ---RVATEQASQAEAARIEAERIEA 180

		               S ++   +    + E AR     V  ++ ++Q      TEQ ++  ++ +E    E+

		Sbjct: 1129 --VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186

		

		Query: 181  ARIESERVVAEQAESARIAAEQAEAQRIEATRIEAARIEAERIEAARIEAARIEAARIEA 240

		              + +   V E  E+   A  Q       + + +     + R     +E A   +     

		Sbjct: 1187 TTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRST 1246

		

		Query: 241  E 241

		             

		Sbjct: 1247 V 1247

		

		

		

		 Score = 49.3 bits (117), Expect = 4e-08

		 Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 17/184 (9%)

		

		Query: 102  AEQARLAAELAAQAETQRIEAERLESEREAAEQAEGQRIEAARLESERVIAEQAEAQRVA 161

		             E+     +         I+A+         E A           +    +E  E   VA

		Sbjct: 985  VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPP-APATPSETTET--VA 1041

		

		Query: 162  TEQASQAEAARIEAERIEAARIESERVVAEQAESARIAAEQAEAQRIEATRIEAARIEAE 221

		                 +++      +       ++  V  E   + +   +  E  +  +   E    E +

		Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101

		

		Query: 222  RIEAARIEAARIEAARIEAERIEAERIEAERIEAERIEAEAADQAAQLEAAEEQ-QPEPQ 280

		              E A +E    E A++E E+ +         E  ++ ++ + +  Q E  + Q +P  +

		Sbjct: 1102 --ETATVEKE--EKAKVETEKTQ---------EVPKVTSQVSPKQEQSETVQPQAEPARE 1148

		

		Query: 281  AKPV 284

		              P 

		Sbjct: 1149 NDPT 1152

		

		

		>SUBTILISIN#Subtilisin serine protease family (S8) signature.

		          Length = 326

		

		 Score =  117 bits (295), Expect = 3e-31

		 Identities = 68/357 (19%), Positives = 109/357 (30%), Gaps = 89/357 (24%)

		

		Query: 31  SDPLYKHQWHLKNTGQAAFSENGGKAGNDLKTKQAHKKGALGQGVQISVVDTGLQIDHID 90

		                  Q    N         G +            +   G+GV+++V+DTG   DH D

		Sbjct: 8   IPYQVIKQEQQVNEIPR-----GVEMIQ---APAVWNQTR-GRGVKVAVLDTGCDADHPD 58

		

		Query: 91  LADNVVPG-SMDLITGSDY--PEDTHGHGTAVGGIIAAVGFNGEGVRGIAPKAGINGFNF 147

		           L   ++ G +       D    +D +GHGT V G IAA   N  GV G+AP+A +     

		Sbjct: 59  LKARIIGGRNFTDDDEGDPEIFKDYNGHGTHVAGTIAATE-NENGVVGVAPEADLLIIKV 117

		

		Query: 148 LFEQ--SMNSWLLSHGYGEGTENTELFNQSYGSQALFIPQFDLENDPQLAIENAVMEDVA 205

		           L +Q      W++   Y    +  ++ + S G         +   +   A++ AV     

		Sbjct: 118 LNKQGSGQYDWIIQGIYYAIEQKVDIISMSLGG-------PEDVPELHEAVKKAVA---- 166

		

		Query: 206 SNSNNGRGAAFVSSAGNSYNYYGYAGYYFLPADYFDVEASNHGLPMQNSNMTNSKATHWS 265

		                      + +AGN  +          P  Y                          

		Sbjct: 167 ------SQILVMCAAGNEGDGDDRTDELGYPGCYN-----------------------EV 197

		

		Query: 266 TTVSAINANGERSSYSTVGANVFMAATGGEYGSETPAMVTTDLMGCDSGFNDSTGLGKNG 325

		            +V AIN +   S +S     V + A G         +++T   G               

		Sbjct: 198 ISVGAINFDRHASEFSNSNNEVDLVAPGE-------DILSTVPGGK-------------- 236

		

		Query: 326 LHGGTADDPNCNYTSVMNGTSSAAPSMVGAIAAVMSANPQLTTRDAKHVLALTAKKT 382

		                         +  +GTS A P + GA+A +         RD            

		Sbjct: 237 -------------YATFSGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIK 280

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  107 bits (269), Expect = 2e-30

		 Identities = 71/257 (27%), Positives = 118/257 (45%), Gaps = 29/257 (11%)

		

		Query: 3   KRVLITGSSRGIGKAIALKLAASGHDIAMHFHSNQTAADATKAELEQLEIKVSCLQF--- 59

		           K   ITG+++GIG+A+A  LA+ G  I         A D    +LE++   +        

		Sbjct: 9   KIAFITGAAQGIGEAVARTLASQGAHI--------AAVDYNPEKLEKVVSSLKAEARHAE 60

		

		Query: 60  ----DIADRAAVKQAIEQDIEQHGAYYGVVLNAGINADTAFPAMTESEWDSVVHTNLDGF 115

		               D+ D AA+ +   +   + G    +V  AG+       ++++ EW++    N  G 

		Sbjct: 61  AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120

		

		Query: 116 YNVIHPTVMPMVQGRQGGRIITLASVSGIAGNRGQVNYSASKAGIIGATKALSLELAKRK 175

		           +N    +V   +  R+ G I+T+ S            Y++SKA  +  TK L LELA+  

		Sbjct: 121 FNASR-SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179

		

		Query: 176 ITVNCIAPGLIETDM-----VSDIPKEMV--------NNLVPMRRMGKPSEIAGLANYLM 222

		           I  N ++PG  ETDM       +   E V           +P++++ KPS+IA    +L+

		Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239

		

		Query: 223 SDDAAYITRQVISVNGG 239

		           S  A +IT   + V+GG

		Sbjct: 240 SGQAGHITMHNLCVDGG 256

		

		

		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

		          Length = 1034

		

		 Score = 45.6 bits (108), Expect = 9e-07

		 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 25/145 (17%)

		

		Query: 675 LLALALLIAGIIFTFRFGVRLAAVV-VAVPA--LSALLTLACLGVSNNPLTLFHALALIL 731

		           L    +L+  +++ F   +R   +  +AVP   L     LA  G S N LT+F    ++L

		Sbjct: 344 LFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMF---GMVL 400

		

		Query: 732 VFGIGIDYSL----------------FFAESKQQTRGVMMAVFMSAMSTLLAFGLLAF-- 773

		             G+ +D ++                    +++    +  A+   AM     F  +AF  

		Sbjct: 401 AIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460

		

		Query: 774 -SQTPAINAFGLTLLLGIGFTFLLS 797

		            S       F +T++  +  + L++

		Sbjct: 461 GSTGAIYRQFSITIVSAMALSVLVA 485

		

		

		

		 Score = 41.0 bits (96), Expect = 2e-05

		 Identities = 49/301 (16%), Positives = 104/301 (34%), Gaps = 32/301 (10%)

		

		Query: 203 VLLKTIAPKVLNQSPQFAAIVMAKGRDSAFNPNAQQLQLSALTAAFDAVKQQDSDI---- 258

		           V LK +A +V      +  I    G+ +A          +AL  A  A+K + +++    

		Sbjct: 260 VRLKDVA-RVELGGENYNVIARINGKPAAGLGIKLATGANALDTA-KAIKAKLAELQPFF 317

		

		Query: 259 -EIIKAGALFHATAATDNAKKEVSTIGLISLLGVIALVWFAFRSFRPLTIALVTVSSSFL 317

		            + +K    +  T     +  EV      +++ V  +++   ++ R   I  + V    L

		Sbjct: 318 PQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLL 377

		

		Query: 318 FAVVTTTAVFGELHLLTLVFGTSLIGISIDY-------CFHYYCERLNHPSHSSDRVIQQ 370

		                  A    ++ LT+      IG+ +D              E    P  ++++ + Q

		Sbjct: 378 GTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQ 437

		

		Query: 371 IFIAISLALLTSVIAYS---AIGLAPFPGMQQVAIFCASGLVGAYLTLLLAYPTLAARPL 427

		           I  A+    +     +      G +     +Q +I   S +  + L  L+  P L A  L

		Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

		

		Query: 428 RDG---------------NRALDYASRYQGFMLSLMPTVPRKRLLLAVGTCMFIIIGFTQ 472

		           +                 N   D++  +    +  +     + LL+       +++ F +

		Sbjct: 498 KPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLR 557

		

		Query: 473 L 473

		           L

		Sbjct: 558 L 558

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score =  107 bits (268), Expect = 4e-27

		 Identities = 88/401 (21%), Positives = 168/401 (41%), Gaps = 19/401 (4%)

		

		Query: 37  AFMAILDIQITNASMKEIQGGLGATLEEGSWIATAYLVAEMIAIPLSGWLSKGLDIRRYM 96

		           +F ++L+  + N S+ +I           +W+ TA+++   I   + G LS  L I+R +

		Sbjct: 23  SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82

		

		Query: 97  LWNSAIFIFASLLCSIAWNLES-MIAFRAMQGFFGGALIPMAFRLILEYLPDSKRAVGMA 155

		           L+   I  F S++  +  +  S +I  R +QG    A   +   ++  Y+P   R     

		Sbjct: 83  LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142

		

		Query: 156 LFGVTATFAPSIGPTLGGWLTEQFSWHYLFYINVPPGIVVMSMLAYGLVKKPINWPELKN 215

		           L G        +GP +GG +     W YL    +P   ++       L+KK +      +

		Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPMITIITVPFLMKLLKKEVRIKG--H 198

		

		Query: 216 VDVSSIITMALGMGCLEVVLEEGNRKDWFGSDFIRNLAIVAAVNIALFVYLQLKSKAPLV 275

		            D+  II M++G+    +          F + +  +  IV+ ++  +FV    K   P V

		Sbjct: 199 FDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFV 248

		

		Query: 276 NLKLLANRDFSISTIAYFLLGLALFSSIYMVPLYLSQIQDYNSLEIGEVLMWLGFPQLLI 335

		           +  L  N  F I  +   ++   +   + MVP  +  +   ++ EIG V+++ G   ++I

		Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308

		

		Query: 336 L-PFMPMLMQRFDNRYLAAFGFFMFGVSYYMNSHMTADFAGPQLIASMVVRAIG-QPFIM 393

		                 +L+ R    Y+   G     VS+   S +         +  ++V  +G   F  

		Sbjct: 309 FGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFL--LETTSWFMTIIIVFVLGGLSFTK 366

		

		Query: 394 VPIGMLATARLQKHENASASTVLNVVRNLGGAVGIAMVSTL 434

		             I  + ++ L++ E  +  ++LN    L    GIA+V  L

		Sbjct: 367 TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407

		

		

		>AUTOINDCRSYN#Autoinducer synthesis protein signature.

		          Length = 216

		

		 Score = 32.5 bits (74), Expect = 3e-04

		 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 12/63 (19%)

		

		Query: 5  SLSFSELSLNELYDLLKLRVDVFV--------VEQNCAYPELDDKDRHSQTQHLLGLNEQ 56

		           ++ + LS  +  +L  LR + F                 E D  D ++ T +L G+ + 

		Sbjct: 6  DVNHTLLSETKSGELFTLRKETFKDRLNWAVQCTDGM---EFDQYD-NNNTTYLFGIKDN 61

		

		Query: 57 GVI 59

		           VI

		Sbjct: 62 TVI 64

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 33.1 bits (75), Expect = 0.006

		 Identities = 34/289 (11%), Positives = 90/289 (31%), Gaps = 38/289 (13%)

		

		Query: 585 KQLNGLHNKVNEVGARLTQTERDKSTLEAEYKSIENRVVELEKSVWGLSHVELVSRVEAE 644

		              + L  +++    +L + ++  S   ++ + +E R  +LEK++ G             

		Sbjct: 85  DHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGA---------MNF 135

		

		Query: 645 LKELLIKRSNLLEQKTSATTQITLFTKSFKAKDLELQSLISEVERKGSEHAYVTVQAYLN 704

		                 K   L  +K +   +     K+ +       +  ++++   +E A +  +    

		Sbjct: 136 STADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAEL 195

		

		Query: 705 ENAIVASSLQKHCEIKRKELDTEVLKYKVEVESLTSQCNALQQEMQVGGTWINFPQLKQQ 764

		           E                           +E E       A + +++         +  + 

		Sbjct: 196 EK--------ALEGAMNFSTADSAKIKTLEAEKAAL--AARKADLE---------KALEG 236

		

		Query: 765 KEALELRLAHSQSAVNAFYGSLSHIILVRSEDTLEKVKEFITGAIEERQRRSEELNILSS 824

		                   +     + A   +L        E    ++++ + GA+      S ++  L +

		Sbjct: 237 AMNFSTADSAKIKTLEAEKAAL--------EARQAELEKALEGAMNFSTADSAKIKTLEA 288

		

		Query: 825 KIKLLSELLASFKPYIRRISLQEELTDVERQLEQRSQVYETLAAEKEVV 873

		           +   L    A  +   +   L      + R L+   +  + L AE + +

		Sbjct: 289 EKAALEAEKADLEHQSQ--VLNANRQSLRRDLDASREAKKQLEAEHQKL 335

		

		

		

		 Score = 32.3 bits (73), Expect = 0.011

		 Identities = 52/343 (15%), Positives = 98/343 (28%), Gaps = 48/343 (13%)

		

		Query: 336 AESTDTFLQIESRLLELSTQKKALTEERSKTSTQLEALNQTLSELNTELKAVDNRTLLLR 395

		              TDT  +++ R  +   +   L  + S  S   +AL     EL  EL     +     

		Sbjct: 46  RSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKND 105

		

		Query: 396 TSIDNASPVYTEISNRRAHFAALGLQIAEKEIAIQKEKVQFNVLNRELSEISTLKITPDL 455

		            S+   +    E+  R+A    L   +         +  +   L  E + ++  K   + 

		Sbjct: 106 KSLSEKASKIQELEARKAD---LEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEK 162

		

		Query: 456 LLTGKVDALLFEQGKIDQLTRCYADLDLIEVNITALHTTKKALTEQMELHERLLSIGLDY 515

		            L G ++    +  KI  L    A L+  +  +          +       + L      

		Sbjct: 163 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 222

		

		Query: 516 LSVQPSNICPLCTSPHASVEALQDKIKNRNLLSDLSQENTKKLSLSSKRQKELRDIIQSI 575

		           L+ + +++            A   KIK         +    +L  + +          + 

		Sbjct: 223 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 282

		

		Query: 576 VQQ----------------------------------AIEAQVKQLNGLHNKVNE----- 596

		           ++                                   A     KQL   H K+ E     

		Sbjct: 283 IKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 342

		

		Query: 597 ------VGARLTQTERDKSTLEAEYKSIENRVVELEKSVWGLS 633

		                 +   L  +   K  LEAE++ +E +    E S   L 

		Sbjct: 343 EASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLR 385

		

		

		>LIPOLPP20#LPP20 lipoprotein precursor signature.

		          Length = 175

		

		 Score = 25.5 bits (55), Expect = 0.010

		 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

		

		Query: 3  LSKLSGLSLVCALVFGLSACAPEVGSEAWCKQMKEKPSG--DWTANEAADYAKH 54

		          + K+ G+S+V A+V    + AP+ G     K  KE   G  DW   +    AK+

		Sbjct: 5  VKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKY 58

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 51.0 bits (122), Expect = 7e-09

		 Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 24/208 (11%)

		

		Query: 142 ELTAAQLALAKIEVAQLSEQTFSLEDVATATIVVDRDRTVTIAPQVDVRVLKRNVVPGQE 201

		           +    +L L K   A+       +         V++ R    +  +  + + ++ V  QE

		Sbjct: 201 QKYQKELNLDKKR-AERLTVLARINR-YENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQE 258

		

		Query: 202 VNKGDILLTLGGVAVAQAQADYINAAAEWSRVKRMSTSAVSASRRLMAQVDAELKRATLE 261

		                               + +N    +        S + +++     V    K   L+

		Sbjct: 259 ----------------NKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILD 302

		

		Query: 262 AMKMTPAQIKA----LANAPETIGSYQLIAPISGRVQQ-DIALLGQIVPAGTALMQLT-D 315

		            ++ T   I      LA   E   +  + AP+S +VQQ  +   G +V     LM +  +

		Sbjct: 303 KLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPE 362

		

		Query: 316 ESHLWVEAELTPTQAEKVSIGSKTVVKV 343

		           +  L V A +       +++G   ++KV

		Sbjct: 363 DDTLEVTALVQNKDIGFINVGQNAIIKV 390

		

		

		

		 Score = 36.0 bits (83), Expect = 3e-04

		 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

		

		Query: 168 VATATIVVDRDRTVTIAPQVDVRVLKRNVVPGQEVNKGDILLTLGGV----AVAQAQADY 223

		            A   +     R+  I P  +  V +  V  G+ V KGD+LL L  +       + Q+  

		Sbjct: 85  TANGKLTHS-GRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSL 143

		

		Query: 224 INAAAEWSRVKRMSTSAVSASRRLMAQVDAELKRATLEAMKMTPAQIKALANAPETIGSY 283

		           + A  E +R + +S S        +   D    +   E   +    +     +      Y

		Sbjct: 144 LQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKY 203

		

		Query: 284 QLIAPISGRVQQDIALLGQI 303

		           Q    +  +  + + +L +I

		Sbjct: 204 QKELNLDKKRAERLTVLARI 223

		

		

		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

		          Length = 1034

		

		 Score =  652 bits (1684), Expect = 0.0

		 Identities = 222/1091 (20%), Positives = 436/1091 (39%), Gaps = 85/1091 (7%)

		

		Query: 5    LIDVAIRNRLMVVLTLVGLIIACVAMLPKLNLDAFPDVTNVQVTVNTAAEGLAAEEVEKL 64

		            + +  IR  +   +  + L++A    + +L +  +P +    V+V+    G  A+ V+  

		Sbjct: 1    MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60

		

		Query: 65   ISYPVESAMYALPAVTEVRSLS-RTGLSIVTVVFAEGTDIYFARQQVFEQLQAAREMIPD 123

		            ++  +E  M  +  +  + S S   G   +T+ F  GTD   A+ QV  +LQ A  ++P 

		Sbjct: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120

		

		Query: 124  GVGVPEIGPNTSGLGQIYQYILRATPESGVDASELRSINDYMVKLIMMPVGGVTEVLSFG 183

		             V    I    S    +      +         ++       VK  +  + GV +V  FG

		Sbjct: 121  EVQQQGISVEKSSSSYLMVAGFVSDNPG-TTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179

		

		Query: 184  GEVRQYQVQIEPNKLLSYGLSMAQVTSALESNNRNAGGWFMDQGQE------QLVVRGYG 237

		             +    ++ ++ + L  Y L+   V + L+  N       +              +    

		Sbjct: 180  AQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238

		

		Query: 238  LLPAGDAGLKAIAQIPLTEVA-GTPVRVGDIAKVDYGSEIRVGAVTMTRRDEAGNAQDLG 296

		                     +   ++ L   + G+ VR+ D+A+V+ G E       +       N +   

		Sbjct: 239  RF----KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARI-------NGK--- 284

		

		Query: 297  EVVAGVVLKRMGANTKETIDDISARTAMIEQALPDGVSFEVFYDQSDLVNQAVTTVRDAL 356

		                  +    GAN  +T   I A+ A ++   P G+     YD +  V  ++  V   L

		Sbjct: 285  PAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTL 344

		

		Query: 357  LMAFVFIVVILALFLVNIRATMLVLLSIPVSIGLALLVMSYFGMSANLMSLGGLAVAIGM 416

		              A + + +++ LFL N+RAT++  +++PV +     +++ FG S N +++ G+ +AIG+

		Sbjct: 345  FEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGL 404

		

		Query: 417  LVDGSVVMVENIFKHLTQPDRRHLANARKRASDEDDPYHADEDGTNTTAHGESSGGITMR 476

		            LVD ++V+VEN+               R    D+  P  A E                  

		Sbjct: 405  LVDDAIVVVENV--------------ERVMMEDKLPPKEATEKSM--------------- 435

		

		Query: 477  VMLAAKEVCSPIFFATAIIIVVFAPLFALEGVEGKLFQPMAVSIILAMISALLVALIAVP 536

		                  ++   +     ++  VF P+    G  G +++  +++I+ AM  ++LVALI  P

		Sbjct: 436  -----SQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTP 490

		

		Query: 537  ALAVYLFK----------RGVVLRESAVLKPIESVYRKLLTSTMAHPKVVGITAVVMFAM 586

		            AL   L K           G     +       + Y   +   +       +   ++ A 

		Sbjct: 491  ALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAG 550

		

		Query: 587  SMMLLPRLGTEFVPELEEGTINLRVTLAPTASLATSLDVAPKLEALLLEFPEVDYALSRI 646

		             ++L  RL + F+PE ++G     + L   A+   +  V  ++    L+  + +   S  

		Sbjct: 551  MVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVE-SVF 609

		

		Query: 647  GAAELGGDPEPVNNIEIYIGLKPVDEWVSATNRFE--LQRKMEAKLNVYPGLLFTFSQPI 704

		                     +  N    ++ LKP +E     N  E  + R       +  G +  F+ P 

		Sbjct: 610  TVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMP- 668

		

		Query: 705  ATRVDELLSGVKAQLA-IKIFGPDLDVLSERGQVLTELVSQIPGAV-DVSLEQVSGEAQL 762

		               + EL +        I   G   D L++    L  + +Q P ++  V    +   AQ 

		Sbjct: 669  --AIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQF 726

		

		Query: 763  VVRPKRDQLARYGISVDEIMALVSQGVGGASAGQVIDGNARYDIYVRLGEQYRSSPDILE 822

		             +   +++    G+S+ +I   +S  +GG      ID      +YV+   ++R  P+ ++

		Sbjct: 727  KLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVD 786

		

		Query: 823  DLLLTGVSGATVRLGEVADVVIEMAPPNIRRDDVQRRVVVQANVADRDMGSVVNDIYAIV 882

		             L +   +G  V              P + R +    + +Q   A    G+   D  A++

		Sbjct: 787  KLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALM 843

		

		Query: 883  PQA--ELPPGYTVVVGGQYENQQRAQQKLMLVVPVSIALIALLLFFSFGSVRQVGLIMAN 940

		                 +LP G      G    ++ +  +   +V +S  ++ L L   + S      +M  

		Sbjct: 844  ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLV 903

		

		Query: 941  VPLALIGGVVALFASGTYLSVPSSIGFITLFGVAVLNGVVLVDSINQRRASVKEETDESL 1000

		            VPL ++G ++A         V   +G +T  G++  N +++V+          E+  + +

		Sbjct: 904  VPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDL----MEKEGKGV 959

		

		Query: 1001 YDAVYEGTVGRLRPVLMTALTSALGLIPILLSSGVGSEIQQPLAVVIIGGLFSSTALTLL 1060

		             +A       RLRP+LMT+L   LG++P+ +S+G GS  Q  + + ++GG+ S+T L + 

		Sbjct: 960  VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019

		

		Query: 1061 VLPTLYRWIYQ 1071

		             +P  +  I +

		Sbjct: 1020 FVPVFFVVIRR 1030

		

		

		

		 Score =  105 bits (263), Expect = 5e-25

		 Identities = 79/552 (14%), Positives = 177/552 (32%), Gaps = 70/552 (12%)

		

		Query: 10   IRNRLMVVLTLVGLIIACVAMLPKLNLDAFPDVTNVQVTVN-TAAEGLAAEEVEKLI--- 65

		            + +    +L    ++   V +  +L     P+              G   E  +K++   

		Sbjct: 534  LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593

		

		Query: 66   -SYPVESAMYALPAVTEVRSLSRTGLS----IVTVVFAEGTDIYFARQQVFEQLQAAREM 120

		              Y +++    + +V  V   S +G +    +  V      +           +  A+  

		Sbjct: 594  TDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKME 653

		

		Query: 121  ---IPDGVGVPEIGPNTSGLGQIYQYILRATPESGVDASELRSINDYMVKLIMMPVGGVT 177

		               I DG  +P   P    LG    +      ++G+    L    + ++ +       + 

		Sbjct: 654  LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLV 713

		

		Query: 178  EVLSFGGEVRQYQVQIEPN--KLLSYGLSMAQVTSALES--NNRNAGGWFMDQGQEQLVV 233

		             V    G     Q ++E +  K  + G+S++ +   + +         +      ++L V

		Sbjct: 714  SVRP-NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYV 772

		

		Query: 234  RGYGLLPAGDAGLKAIAQIPLTEVAGTPVRVGDIAKVDYGSEIRVGAVTMTRRDEAGNAQ 293

		            +            + + ++ +    G  V         +      G+  + R +   + +

		Sbjct: 773  Q---ADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVY----GSPRLERYNGLPSME 825

		

		Query: 294  DLGEVVAGVVLKRMGANTKETIDDISARTAMIEQALPDGVSFEVFYDQSDLVNQAVTTVR 353

		              GE   G               D  A    +   LP G+ ++ +   S     +     

		Sbjct: 826  IQGEAAPGTSS-----------GDAMALMENLASKLPAGIGYD-WTGMSYQERLSGNQAP 873

		

		Query: 354  DALLMAFVFIVVILALFLVNIRATMLVLLSIPVSIGLALLVMSYFGMSANLMSLGGLAVA 413

		              + ++FV + + LA    +    + V+L +P+ I   LL  + F    ++  + GL   

		Sbjct: 874  ALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTT 933

		

		Query: 414  IGMLVDGSVVMVENIFKHLTQPDRRHLANARKRASDEDDPYHADEDGTNTTAHGESSGGI 473

		            IG+    ++++VE           + L     +   E                       

		Sbjct: 934  IGLSAKNAILIVEFA---------KDLMEKEGKGVVE----------------------- 961

		

		Query: 474  TMRVMLAAKEVCSPIFFATAIIIVVFAPLFALEGVEGKLFQPMAVSIILAMISALLVALI 533

		                ++A +    PI   +   I+   PL    G        + + ++  M+SA L+A+ 

		Sbjct: 962  --ATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019

		

		Query: 534  AVPALAVYLFKR 545

		             VP   V + + 

		Sbjct: 1020 FVPVFFVVIRRC 1031

		

		

		

		 Score = 94.1 bits (234), Expect = 2e-21

		 Identities = 92/521 (17%), Positives = 191/521 (36%), Gaps = 53/521 (10%)

		

		Query: 578  ITAVVMFAMSMML----LPRLGTEFVPELEEGTINLRVTLAPTASLATSLD-VAPKLEAL 632

		            I A V+  + MM     + +L     P +    +++     P A   T  D V   +E  

		Sbjct: 10   IFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSAN-YPGADAQTVQDTVTQVIEQN 68

		

		Query: 633  LLEFPEVDYALSRIGAAELGGDPEPVNNIEIYIGLKPVDEWVSATNRFELQRKMEAKLNV 692

		            +     + Y  S           +   ++ I +  +        T+    Q +++ KL +

		Sbjct: 69   MNGIDNLMYMSST---------SDSAGSVTITLTFQS------GTDPDIAQVQVQNKLQL 113

		

		Query: 693  YPGLLFTFSQPIATRVDELLSGVKAQLAIKIFGPDLDVLSERGQVLTEL---VSQIPGAV 749

		               LL    Q     V++  S            P          V + +   +S++ G  

		Sbjct: 114  ATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVG 173

		

		Query: 750  DVSLEQVSGEAQLVVRPKRDQLARYGISVDEIM-ALVSQ----GVGGASAGQVIDGNARY 804

		            DV L     +  + +    D L +Y ++  +++  L  Q      G       + G  + 

		Sbjct: 174  DVQL--FGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQ-QL 230

		

		Query: 805  DIYVRLGEQYRSSPDILEDLLLTGVSGATVRLGEVADVVIEMAPPNIR-RDDVQRRVVVQ 863

		            +  +    ++++  +  +  L     G+ VRL +VA V +     N+  R + +    + 

		Sbjct: 231  NASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLG 290

		

		Query: 864  ANVA-DRDMGSVVNDIYAIVP--QAELPPGYTVVVGGQYENQQRAQQKLMLVVP---VSI 917

		              +A   +       I A +   Q   P G  V+    Y+     Q  +  VV     +I

		Sbjct: 291  IKLATGANALDTAKAIKAKLAELQPFFPQGMKVLY--PYDTTPFVQLSIHEVVKTLFEAI 348

		

		Query: 918  ALIALLLFFSFGSVRQVGLIMANVPLALIGGVVALFASGTYLSVPSSIGFITLFGVAVLN 977

		             L+ L+++    ++R   +    VP+ L+G    L A G       SI  +T+FG+ +  

		Sbjct: 349  MLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGY------SINTLTMFGMVLAI 402

		

		Query: 978  GVVLVDSI----NQRRASVKEETDESLYDAVYEGTVGRLRPVLMTALTSALGLIPILLSS 1033

		            G+++ D+I    N  R  ++++      +A  +        ++  A+  +   IP+    

		Sbjct: 403  GLLVDDAIVVVENVERVMMEDKLPP--KEATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460

		

		Query: 1034 GVGSEIQQPLAVVIIGGLFSSTALTLLVLPTLYRWIYQGRK 1074

		            G    I +  ++ I+  +  S  + L++ P L   + +   

		Sbjct: 461  GSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVS 501

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 55.6 bits (134), Expect = 5e-11

		 Identities = 36/182 (19%), Positives = 69/182 (37%), Gaps = 23/182 (12%)

		

		Query: 6   KIMVTGASGLLGRALIKQLGQNSQQQI----IACGY------------SRFGPNIERLDL 49

		           K +VTGA+G +G  + K+L +   Q +    +   Y            ++ G    ++DL

		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

		

		Query: 50  TQAAQVSSFVAKHKPDIILHCAAERRPDVSEQDPQAALALNSEATQFLTQAASQHG-AWL 108

		                ++   A    + +           S ++P A    N      + +    +    L

		Sbjct: 62  ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121

		

		Query: 109 LYISTDYVFDGSQS-PYREDAETN-PVNFYGQSKLKGELVVSDAQQGFAI----LRLPIL 162

		           LY S+  V+  ++  P+  D   + PV+ Y  +K   EL+       + +    LR   +

		Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181

		

		Query: 163 YG 164

		           YG

		Sbjct: 182 YG 183

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 88.0 bits (218), Expect = 7e-23

		 Identities = 27/111 (24%), Positives = 58/111 (52%), Gaps = 1/111 (0%)

		

		Query: 1   MTK-KLLIIEDDIALASVLVRRMTKQGFECQQCHDATQGLLLARQFRPTHLLLDMKLDQE 59

		           MT   +L+ +DD A+ +VL + +++ G++ +   +A              ++ D+ +  E

		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60

		

		Query: 60  NGLKLISPLRQLLPDVVMVLLTGYASIATAVEAIRLGADNYLAKPVDTQTL 110

		           N   L+  +++  PD+ +++++   +  TA++A   GA +YL KP D   L

		Sbjct: 61  NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111

		

		

		

		 Score = 47.9 bits (114), Expect = 5e-09

		 Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 20/172 (11%)

		

		Query: 8   IEDDIALASVLVRRMTKQGFECQQCHDATQGLLLA-------RQFRPTHLLLDMKLDQEN 60

		            ED   L    V++  K+G + ++       L+ A       R+    +L+  +      

		Sbjct: 314 AEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELE--NLVRRLTALYPQ 371

		

		Query: 61  GLKLISPLRQLLPDVVMVLLTGYASIATAVEAIRLGADNYLAKPVDTQTLFNALSTTPFD 120

		            +     +   L   +       A+  +   +I    +  + +               F 

		Sbjct: 372 DVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFA-----------SFG 420

		

		Query: 121 SMIESLIEEPLSPKRLEWEHIQQVLNANSGNVSATARQLGMHRRTLQRKLLK 172

		             +            +E+  I   L A  GN    A  LG++R TL++K+ +

		Sbjct: 421 DALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472

		

		

		>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature.

		          Length = 483

		

		 Score = 28.9 bits (64), Expect = 0.028

		 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

		

		Query: 64  QPNFSPDSSQLLFTSDRQAAPNSNSQTPAAHNDIYQFQI--ADSHIEQLTFTPEQSEYSP 121

		           QP  SP +  LL  + +Q    SN Q   AH  I+   +  AD   EQL  T E+     

		Sbjct: 300 QPKISPVALDLLVINKQQ----SNFQK-EAHEIIFDLALDGADQTKEQLIKTDEELGTDD 354

		

		Query: 122 QAFKTDKATKQITYV 136

		           + F    A +  +YV

		Sbjct: 355 EDFYLKGAMQNFSYV 369

		

		

		>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature.

		          Length = 331

		

		 Score = 56.3 bits (136), Expect = 4e-11

		 Identities = 75/367 (20%), Positives = 130/367 (35%), Gaps = 54/367 (14%)

		

		Query: 1   MKKTLISASVASVLTLASFGALADGPGFYGRLDLAVTNSDT----GATTQNGKSGTVFEN 56

		           MKK+LI+ ++A++   A           YG +   V  S +    GA   + ++GT   +

		Sbjct: 1   MKKSLIALTLAALPVAAMADV-----TLYGTIKAGVETSRSVAHNGAQAASVETGTGIVD 55

		

		Query: 57  NFSFVGVKGTESLTNNIDVVYQMEFQVENTTNSGETFKARNTYLGLKSQAGTVLVGRNDH 116

		             S +G KG E L N +  ++Q+E +  +   +   +  R +++GLK   G + VGR + 

		Sbjct: 56  LGSKIGFKGQEDLGNGLKAIWQVEQKA-SIAGTDSGWGNRQSFIGLKGGFGKLRVGRLNS 114

		

		Query: 117 VFKQS------EGGVDIFGNTNADIDRLVAGQDRVADGIWYYSPKIAGLV-TLNATYLME 169

		           V K +      +   D  G         +A  +     + Y SP+ AGL  ++       

		Sbjct: 115 VLKDTGDINPWDSKSDYLGVNK------IAEPEARLISVRYDSPEFAGLSGSVQYALNDN 168

		

		Query: 170 DNYIDADDKDAVASYD-----AQYALSATIGDKKLKEQNYYVAAAYNTIKGIDAYRGVAQ 224

		               +++   A  +Y       QY  +     +  +  N      +  + G D     A 

		Sbjct: 169 AGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDNDALYAS 228

		

		Query: 225 V--KLGDFKVGGLFQNTESQTTDQEGNSYFVNVAYNLNGVNLKAEYGMDEGGFGKYYQNS 282

		           V  +  D K+     +  SQ            +AY    V  +  Y     GF   +   

		Sbjct: 229 VAVQQQDAKLVEENYSHNSQ------TEVAATLAYRFGNVTPRVSYAH---GFKGSFDA- 278

		

		Query: 283 VPKVDGSKVIGTDINVQVITVGADYKISKSTMVYGHYAMYEGDHKVAGNKFDLKDDNVFT 342

		                       + +   + VGA+Y  SK T         +      G            

		Sbjct: 279 ---------TNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQE-----GKGESKFVSTAGG 324

		

		Query: 343 VGLRYNF 349

		           VGLR+ F

		Sbjct: 325 VGLRHKF 331

		

		

		>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature.

		          Length = 331

		

		 Score = 61.4 bits (149), Expect = 1e-12

		 Identities = 68/364 (18%), Positives = 121/364 (33%), Gaps = 44/364 (12%)

		

		Query: 1   MKKTVLSATIISALAATSFTALADGPNFYGRADLAITNSDM----GIATQNQKSGTVIEN 56

		           MKK++++ T+ +   A            YG     +  S      G    + ++GT I +

		Sbjct: 1   MKKSLIALTLAALPVAAMADV-----TLYGTIKAGVETSRSVAHNGAQAASVETGTGIVD 55

		

		Query: 57  NFSWLGVKGTEAINSELEVVYQMEFGVNNFDNSGNTFSARNTFLGLKSATAGTILVGRND 116

		             S +G KG E + + L+ ++Q+E   +         + R +F+GLK    G + VGR +

		Sbjct: 56  LGSKIGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWGN-RQSFIGLK-GGFGKLRVGRLN 113

		

		Query: 117 TVFK------ASEGGFDIFGNTNSDIDLFAAGQSRNADGFTYYSPKIAGLVTLNATYLMD 170

		           +V K        +   D  G     ++  A  ++R      Y SP+ AGL          

		Sbjct: 114 SVLKDTGDINPWDSKSDYLG-----VNKIAEPEARLI-SVRYDSPEFAGLS-------GS 160

		

		Query: 171 DNYAQEVDGKKVDTDNMYALSATIGDKGLKAQNYYVAAAYNDSIDNVKAYRGVAQVKLGQ 230

		             YA   +  + ++++ Y       + G   Q       ++   +NV   +         

		Sbjct: 161 VQYALNDNAGRHNSES-YHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHR---- 215

		

		Query: 231 VILGGFYQNSEHVDSKYANLEGDTYFVNAAYVMGDLKLKAMYGSDDSGLGKYVSRYVGSV 290

		             L   Y N     S     +               ++ A        +   VS Y    

		Sbjct: 216 --LVSGYDNDALYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVS-YAHGF 272

		

		Query: 291 DGATLENVSDVDL-QQFSVGADYRLSKNTLVYGHYTKYDGDIKLAGATQDLSDDIFTVGM 349

		              + +  +  +   Q  VGA+Y  SK T               +            VG+

		Sbjct: 273 -KGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVS----TAGGVGL 327

		

		Query: 350 RFDF 353

		           R  F

		Sbjct: 328 RHKF 331

		

		

		>TCRTETA#Tetracycline resistance protein signature.

		          Length = 399

		

		 Score = 38.7 bits (90), Expect = 4e-05

		 Identities = 58/379 (15%), Positives = 128/379 (33%), Gaps = 41/379 (10%)

		

		Query: 55  FFPNYDTTSALMATFAIFAIS-FIVRPLGGIFWGHIGDKIGRKTALSMSIIIMSCATFCI 113

		              + D T+      A++A+  F   P+ G     + D+ GR+  L +S+   +     +

		Sbjct: 35  LVHSNDVTAHYGILLALYALMQFACAPVLG----ALSDRFGRRPVLLVSLAGAAVDYAIM 90

		

		Query: 114 ALLPDYNSIGIMAPLLLLVARMFQGFSASGEYAGAATFLTEIAPKEEKGFYASIVPASAA 173

		           A  P           +L + R+  G +     A A  ++ +I   +E+  +   + A   

		Sbjct: 91  ATAP--------FLWVLYIGRIVAGITG-ATGAVAGAYIADITDGDERARHFGFMSACFG 141

		

		Query: 174 AGLLFGSIFISILYAFLSSAQLHEWGWRIPFLLAAPFGLIGLYIRVKIEDSPQFVKFKEE 233

		            G++ G +             +  +    PF  AA    +       +       + +  

		Sbjct: 142 FGMVAGPVL---------GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPL 192

		

		Query: 234 NKEKQSP---IPLQVILAHHKKPLLLGFLVTSLNALGFYLLLSYMPTYMTVHLEVKDTT- 289

		            +E  +P         +      + + F++  +  +   L + +       H +      

		Sbjct: 193 RREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIF--GEDRFHWDATTIGI 250

		

		Query: 290 AFAISSIVLAFYILFVFSIGKLSDKFGRRKLLMLASLCFICLSIPIFIILESANIFQMTL 349

		           + A   I+ +     +   G ++ + G R+ LML  +      I +         F + +

		Sbjct: 251 SLAAFGILHSLAQAMIT--GPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMV 308

		

		Query: 350 VLILFSAFLALNDGCLSCYLCELFPTNVRYTGFALSFNSANALFGGTAPFIATTLIAVT- 408

		           +L      +      LS  + E      +  G   +  S  ++ G   P + T + A + 

		Sbjct: 309 LLASGGIGMPALQAMLSRQVDE--ERQGQLQGSLAALTSLTSIVG---PLLFTAIYAASI 363

		

		Query: 409 ----GLSYAPGFYLMLIAL 423

		               G ++  G  L L+ L

		Sbjct: 364 TTWNGWAWIAGAALYLLCL 382

		

		

		

		 Score = 34.8 bits (80), Expect = 6e-04

		 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

		

		Query: 252 KPLLLGFLVTSLNALGFYLLLSYMPTYMTVHLEVKDTTAFAISSIVLAFYIL--FVFS-- 307

		           +PL++     +L+A+G  L++  +P  +     V      A   I+LA Y L  F  +  

		Sbjct: 5   RPLIVILSTVALDAVGIGLIMPVLPGLLRDL--VHSNDVTAHYGILLALYALMQFACAPV 62

		

		Query: 308 IGKLSDKFGRRKLLMLASLCFICLSIPIF 336

		           +G LSD+FGRR  ++L SL    +   I 

		Sbjct: 63  LGALSDRFGRR-PVLLVSLAGAAVDYAIM 90

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 40.6 bits (95), Expect = 6e-06

		 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 3/95 (3%)

		

		Query: 214 GRILWVDDHPENNLVEKAFFEQKGIGVYSTVTSEEALMLLSMYHYQAVISDMGRHGDSLA 273

		             IL  DD      V      + G  V  T  +      ++      V++D+    ++  

		Sbjct: 4   ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN-- 61

		

		Query: 274 GLKLLQSIRASGNKTPFYLYT-YVESAGVVDAIDE 307

		              LL  I+ +    P  + +        + A ++

		Sbjct: 62  AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEK 96

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score = 35.2 bits (81), Expect = 4e-04

		 Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 3/180 (1%)

		

		Query: 12  NWAPVWLLALTAFVFVSTEFVPVGILAALGQSFNMSAVAVGPMLTVYAAVVALASLPAVL 71

		           N   +WL  L+ F  ++   + V  L  +   FN    +   + T +    ++ +     

		Sbjct: 13  NQILIWLCILSFFSVLNEMVLNVS-LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGK 71

		

		Query: 72  LFARFERKKLLLGIMAVFIISHGICVWAPSY-DILLSGRIGIALTHALFWAIAPALVVRL 130

		           L  +   K+LLL  + +      I     S+  +L+  R       A F A+   +V R 

		Sbjct: 72  LSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARY 131

		

		Query: 131 APEGQGAKALSIFATGCVLALVLGIPLGRVIGQLIGWRSIFALIGLLTFAMMLLLWRGLP 190

		            P+    KA  +  +   +   +G  +G +I   I W  +  LI ++T   +  L + L 

		Sbjct: 132 IPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL-LIPMITIITVPFLMKLLK 190

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 35.3 bits (81), Expect = 3e-05

		 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

		

		Query: 70  LINVVWVDESARGTGLGRDLMQRAEVEAKQRGCTMAQLDTLSFQAPV--FYQKLGFEIIG 127

		           LI  + V +  R  G+G  L+ +A   AK+       L+T         FY K  F I  

		Sbjct: 91  LIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 39.4 bits (92), Expect = 7e-05

		 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 21/215 (9%)

		

		Query: 696 RIDSDIKQLQGQ-QQEWLEEQKEQALEARMEKNAYWQEVVGALDSQLNQVKSNIQSRRDH 754

		             ++D  + Q    Q  LE+ + Q L   +E N    E+    +     V      R   

		Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKL-PELKLPDEPYFQNVSEEEVLRLTS 189

		

		Query: 755 AASEQKACEQWYKNELKSRGVDEAKIVALKAEIRTLESSISKAEQRRSEVLRYEDWYQHT 814

		              EQ +  Q  K +       E  +   +AE  T+ + I++ E   S V +        

		Sbjct: 190 LIKEQFSTWQNQKYQK------ELNLDKKRAERLTVLARINRYENL-SRVEKSR------ 236

		

		Query: 815 WLKRKPKLQSELSKVKHASLDLEQQLKSKANEVKAKRNELDGERKRSDVVQIEASENLTK 874

		            L     L  + +  KHA L+ E +     NE++  +++L+         + E       

		Sbjct: 237 -LDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295

		

		Query: 875 LRSVMRKLSELKLPASNDDAQGSLTERLRQGEDQL 909

		            ++ +      KL  + D+    LT  L + E++ 

		Sbjct: 296 FKNEILD----KLRQTTDNIG-LLTLELAKNEERQ 325

		

		

		>HELNAPAPROT#Helicobacter neutrophil-activating protein A family

		           signature.

		          Length = 153

		

		 Score = 34.8 bits (80), Expect = 2e-04

		 Identities = 27/123 (21%), Positives = 38/123 (30%), Gaps = 17/123 (13%)

		

		Query: 111 AAVNASLERLQIDTIDLY----QIHWPDRNTNFFGELSYNQQDEHEKLTPIIDTLEALSD 166

		             V  SL     +   LY    + HW  +  +FF          HEK   + D      D

		Sbjct: 11  TLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFF--------TLHEKFEELYDHAAETVD 62

		

		Query: 167 LIKAGKIRYIGISNETPWGFM-EYLRLAEKHDLPKIVSVQNPYNLLNRSYEVGMAEISHR 225

		            I A ++  IG     P   + EY   A   D     S       L   Y+   +E    

		Sbjct: 63  TI-AERLLAIGGQ---PVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFV 118

		

		Query: 226 EEV 228

		             +

		Sbjct: 119 IGL 121

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 36.8 bits (85), Expect = 4e-05

		 Identities = 14/49 (28%), Positives = 18/49 (36%)

		

		Query: 240 PEVRGKGFAKRLALQAIRYANVQGYTSCYLETTANLIEAIKLYESLGFK 288

		            + R KG    L  +AI +A    +    LET    I A   Y    F 

		Sbjct: 99  KDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 29.5 bits (66), Expect = 0.004

		 Identities = 9/24 (37%), Positives = 14/24 (58%)

		

		Query: 70  QLAILTGMLVHPDYRGQGVGHRLM 93

		             A++  + V  DYR +GVG  L+

		Sbjct: 88  GYALIEDIAVAKDYRKKGVGTALL 111

		

		

		>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature.

		          Length = 331

		

		 Score = 26.7 bits (59), Expect = 0.046

		 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

		

		Query: 82  DTKIGVKFGDDYLGFHPYLTVAYGEGKATIYNYSGDDNYIFVGAGAEVQIAKNYVISAEF 141

		            T++       +    P ++ A+G    +    + +++Y  V  GAE   +K        

		Sbjct: 248 QTEVAATLAYRFGNVTPRVSYAHGFKG-SFDATNYNNDYDQVVVGAEYDFSKRTSALVSA 306

		

		Query: 142 GNLKLDE-LSEISANVTRINFAYKF 165

		           G L+  +  S+  +    +   +KF

		Sbjct: 307 GWLQEGKGESKFVSTAGGVGLRHKF 331

		

		

		>TCRTETA#Tetracycline resistance protein signature.

		          Length = 399

		

		 Score = 67.5 bits (165), Expect = 3e-14

		 Identities = 64/308 (20%), Positives = 108/308 (35%), Gaps = 36/308 (11%)

		

		Query: 71  SDYGIIIAIWAFMQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLVMAFFPSFYGFLFG 130

		           + YGI++A++A MQ       G +SDR G +  +  S       Y +MA  P  +  L+ 

		Sbjct: 43  AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW-VLYI 101

		

		Query: 131 AILLAGGTGIFKPGIQGTLVLSTGRQNTSMAWGIFYQVVNIGGFLGPLVAVHMRQLSWDN 190

		             ++AG TG         +   T     +  +G        G   GP++   M   S   

		Sbjct: 102 GRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHA 161

		

		Query: 191 VFYACAAIISLNFLF-LLAYKEPGKEERMERNRKIKAGEIHQEALWRDALHELKKPIVIY 249

		            F+A AA+  LNFL       E  K ER    R+              AL+ L       

		Sbjct: 162 PFFAAAALNGLNFLTGCFLLPESHKGERRPLRRE--------------ALNPLASFRWAR 207

		

		Query: 250 YMLVFAGFWFLFNSLFDVLPIHISEWVDTSVIVTSLFGPDGTSNGFFQFWLGLDNTGTKV 309

		            M V A    +F  +  V  +  + WV   +     F  D T+ G      G+ +     

		Sbjct: 208 GMTVVAALMAVFFIMQLVGQVPAALWV---IFGEDRFHWDATTIGISLAAFGILH----- 259

		

		Query: 310 MPEGMLNLNAGMIMTTCFLVAALTAKYRITTAMLAGCLLSILAFVLIGATNAAWMIVLAI 369

		                        +    +   + A+     A++ G +     ++L+      WM    +

		Sbjct: 260 ------------SLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIM 307

		

		Query: 370 AMFSFGEM 377

		            + + G +

		Sbjct: 308 VLLASGGI 315

		

		

		

		 Score = 50.6 bits (121), Expect = 8e-09

		 Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 10/145 (6%)

		

		Query: 66  LGISLSDYGIIIAIWAFMQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLVMAFFPSFY 125

		           +GISL+ +GI+ ++         + TG ++ R+G +  +    I    GY+++AF    +

		Sbjct: 248 IGISLAAFGILHSL------AQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301

		

		Query: 126 GFLFGAILLAGGTGIFKPGIQGTLVLSTGRQNTSMAWGIFYQVVNIGGFLGPLVAVHMRQ 185

		                 +LLA G GI  P +Q  L      +      G    + ++   +GPL+   +  

		Sbjct: 302 MAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360

		

		Query: 186 LS---WDNVFYACAAIISLNFLFLL 207

		            S   W+   +   A + L  L  L

		Sbjct: 361 ASITTWNGWAWIAGAALYLLCLPAL 385

		

		

		>PF06057#Type IV secretory pathway VirJ component

		          Length = 243

		

		 Score = 28.7 bits (64), Expect = 0.023

		 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 7/50 (14%)

		

		Query: 98  LLIGY-------PMAYAIARAPKRNQTMLILLVMLPSWTSFLIRVYAWMG 140

		           +LIGY       P       A  R   +  +L+     + F I V   + 

		Sbjct: 120 ILIGYSFGAEVIPFVLNEMPARYRKNVLGAVLLSPSQSSDFEIHVSEMVT 169

		

		

		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

		          Length = 1034

		

		 Score = 26.7 bits (59), Expect = 0.011

		 Identities = 8/24 (33%), Positives = 14/24 (58%)

		

		Query: 3   KHLGVAAVLVVLLILIFGCSQRSA 26

		           K L  A +LV L++ +F  + R+ 

		Sbjct: 342 KTLFEAIMLVFLVMYLFLQNMRAT 365

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 26.7 bits (59), Expect = 0.021

		 Identities = 7/24 (29%), Positives = 14/24 (58%)

		

		Query: 18  LAEELGNVSRACKVMGVSRDTFYR 41

		           L    GN  +A  ++G++R+T  +

		Sbjct: 445 LTATRGNQIKAADLLGLNRNTLRK 468

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 49.9 bits (119), Expect = 3e-10

		 Identities = 20/56 (35%), Positives = 35/56 (62%)

		

		Query: 2  TKKTFGFSLIELVVVLVILGVLSVIVIPRFINLHRDAKIATLKATKGSIESAFDMF 57

		          T K  GF+L+E++VV+VI+GVL+ +V+P  +     A      +   ++E+A DM+

		Sbjct: 4  TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMY 59

		

		

		>ADHESNFAMILY#Adhesin family signature.

		          Length = 309

		

		 Score = 29.8 bits (67), Expect = 0.005

		 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

		

		Query: 112 LQIEKANVQIENTEKQILETQQKNKTDLYLAHYKHFSEHLVALEAKWKNTVN 163

		           L +E   +  +N  KQ+      NK + Y  + K +++ L  L+ + K+  N

		Sbjct: 142 LNLENGIIFAKNIAKQLSAKDPNNK-EFYEKNLKEYTDKLDKLDKESKDKFN 192

		

		

		>TONBPROTEIN#Gram-negative bacterial tonB protein signature.

		          Length = 239

		

		 Score = 26.1 bits (57), Expect = 0.040

		 Identities = 9/24 (37%), Positives = 12/24 (50%)

		

		Query: 102 EVEPEPEPEPQSPVRKGPTRKGPG 125

		           E EP PEP  ++PV     +  P 

		Sbjct: 74  EPEPIPEPPKEAPVVIEKPKPKPK 97

		

		

		>BLACTAMASEA#Beta-lactamase class A signature.

		          Length = 286

		

		 Score = 26.3 bits (58), Expect = 0.015

		 Identities = 9/30 (30%), Positives = 17/30 (56%)

		

		Query: 49  TLSPSAQAASAIVSELARALSPTQRQQLQQ 78

		           T +P++ AA+      ++ LS   ++QL Q

		Sbjct: 176 TTTPASMAATLRKLLTSQRLSARSQRQLLQ 205

		

		

		>PF05043#Transcriptional activator

		          Length = 493

		

		 Score = 29.5 bits (66), Expect = 0.009

		 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 10/62 (16%)

		

		Query: 55  DGKSFAP--RKKNSESKSLKRLAKGLKPYVTGGNRLELK-HKNKLTGR-------IAAFH 104

		           +G       ++    S SL R+   +   +    + E+     ++ G         A + 

		Sbjct: 99  EGCQAESICKEFYISSSSLYRIISQINKVIKRQFQFEVSLTPVQIIGNERDIRYFFAQYF 158

		

		Query: 105 QE 106

		            E

		Sbjct: 159 SE 160

		

		

		>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family

		           signature.

		          Length = 1024

		

		 Score = 27.2 bits (60), Expect = 0.021

		 Identities = 14/70 (20%), Positives = 31/70 (44%)

		

		Query: 40  LKDFTDAVKASQKLNEMEKKQIRDFIEDNMDIVKEGLESWIEGVEGISSAERCIQKMFSG 99

		            ++F     +S K++E+ KKQ       + ++ K  +E   + V+ ++S    +      

		Sbjct: 149 FQNFLGTALSSMKIDELIKKQKSGGNVSSSELAKASIELINQLVDTVASLNNNVNSFSQQ 208

		

		Query: 100 LSELATFSEN 109

		           L+ L +   N

		Sbjct: 209 LNTLGSVLSN 218

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score =  132 bits (333), Expect = 1e-37

		 Identities = 95/271 (35%), Positives = 134/271 (49%), Gaps = 10/271 (3%)

		

		Query: 2   AITVNTNVTSMKAQKNLNASSQNLATSMERLSSGLRINSAKDDAAGLAISNRLDSQVRGL 61

		           A  +NTN  S+  Q NLN S  +L++++ERLSSGLRINSAKDDAAG AI+NR  S ++GL

		Sbjct: 1   AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60

		

		Query: 62  DVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLTIQASNGANSSDDIASIKKEIDALAG 121

		               RNAND ISIAQ +EGA+ E  N LQR+R+L++QA+NG NS  D+ SI+ EI     

		Sbjct: 61  TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120

		

		Query: 122 EITSIGNTTAFGNTKLMNGDFSAGKSFQVGHQKGEDITVKVQKVNASSLAVGSL------ 175

		           EI  + N T F   K+++ D       QVG   GE IT+ +QK++  SL +         

		Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQ--MKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPK 178

		

		Query: 176 --TLTNSANRQSALTKIDAAIKTIDSQRADLGAVQNRLSHNISNSANTQANVADAKSRIV 233

		             T+ +  +    +T  D      +  R D+ +             +     A       

		Sbjct: 179 EATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTT 238

		

		Query: 234 DVDFAKETAAMTKNQVLQQTGSAMLAQANQL 264

		           D         + K        +   A A  +

		Sbjct: 239 DDAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269

		

		

		

		 Score = 87.0 bits (215), Expect = 2e-21

		 Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 4/213 (1%)

		

		Query: 60  GLDVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLTIQASNGANSSDDIASIKKEIDAL 119

		            +   +      +++A I+ GA       LQ  +++     NG  + DD    +    + 

		Sbjct: 298 KVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSD 357

		

		Query: 120 AGEITSIGNTTAFGNTKLMNGDFSAGKSFQVGHQKGEDITVKVQKVNASSLAVGSLTLTN 179

		                ++   +            +AG    +  +         +  +  S  +       

		Sbjct: 358 LEANNAVKGESKITVNGAEYTANAAGDKVTLAGK----TMFIDKTASGVSTLINEDAAAA 413

		

		Query: 180 SANRQSALTKIDAAIKTIDSQRADLGAVQNRLSHNISNSANTQANVADAKSRIVDVDFAK 239

		             +  + L  ID+A+  +D+ R+ LGA+QNR    I+N  NT  N+  A+SRI D D+A 

		Sbjct: 414 KKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYAT 473

		

		Query: 240 ETAAMTKNQVLQQTGSAMLAQANQLPQVALSLL 272

		           E + M+K Q+LQQ G+++LAQANQ+PQ  LSLL

		Sbjct: 474 EVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506

		

		

		>SHIGARICIN#Ribosome inactivating protein family signature.

		          Length = 289

		

		 Score = 29.4 bits (66), Expect = 0.025

		 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

		

		Query: 276 NTLVESISNLSKYDTEKEEAAALQGDSMI------RSIESQMRNMISNRVDVDGETIAL 328

		             L  +I+ L  Y+     +A +            + IE Q+   +          I+L

		Sbjct: 153 PALDSAITTLFYYNANSAASALMVLIQSTSEAARYKFIEQQIGKRVDKTFLPSLAIISL 211

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score =  436 bits (1124), Expect = e-152

		 Identities = 166/478 (34%), Positives = 256/478 (53%), Gaps = 17/478 (3%)

		

		Query: 7   RILLVGNQSERINRLSCVFEFLGEQVELIDFDKLELHTKQTRFRAIVLPSENQPK----E 62

		            IL+  + +     L+      G  V +                 +V+     P     +

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 63  LIQSLTGMLPWQPFLTLGERDDIKA------SNILGCIEEPLNYPQLTELLHFCQVYGQV 116

		           L+  +    P  P L +  ++                + +P +  +L  ++       + 

		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

		

		Query: 117 KRPEIPTSANQTKLFRSLVGRSEGIASVRHLINQVSGSEATVLVLGQSGTGKEVVARNIH 176

		           +  ++   +        LVGRS  +  +  ++ ++  ++ T+++ G+SGTGKE+VAR +H

		Sbjct: 125 RPSKLEDDSQD---GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181

		

		Query: 177 YISDRRDGPFIPVNCGAIPAELLESELFGHEKGSFTGAISARKGRFELAEKGTLFLDEIG 236

		               RR+GPF+ +N  AIP +L+ESELFGHEKG+FTGA +   GRFE AE GTLFLDEIG

		Sbjct: 182 DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241

		

		Query: 237 DMPLQMQVKLLRVLQERMFERVGGSKSIAADVRVVAATHRNLETMIEEGGFREDLYYRLN 296

		           DMP+  Q +LLRVLQ+  +  VGG   I +DVR+VAAT+++L+  I +G FREDLYYRLN

		Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301

		

		Query: 297 VFPIEMPALCERKEDIPLLLQELVSRVYNEGRGRVRFTQRAIESLKEHAWSGNVRELSNL 356

		           V P+ +P L +R EDIP L++  V +   EG    RF Q A+E +K H W GNVREL NL

		Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELENL 361

		

		Query: 357 VERLTILYPGGLVDVNDLPIKYRHIDVPEYCVEISEEQQERDALASIFNDEEPIEIPETR 416

		           V RLT LYP  ++    +  + R  ++P+  +E +  +    +++     EE +      

		Sbjct: 362 VRRLTALYPQDVITREIIENELRS-EIPDSPIEKAAARSGSLSISQAV--EENMRQYFAS 418

		

		Query: 417 FPSELPPEGVNLKDLLAELEIDMIRQALDQQDNVVARAAEMLGIRRTTLVEKMRKYGM 474

		           F   LPP G+    +LAE+E  +I  AL        +AA++LG+ R TL +K+R+ G+

		Sbjct: 419 FGDALPPSGL-YDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score =  467 bits (1202), Expect = e-164

		 Identities = 170/483 (35%), Positives = 250/483 (51%), Gaps = 39/483 (8%)

		

		Query: 1   MSEGKLLLVEDDASLREALLDTLMLAHYDCVDVGSAEEAILALKADRFDLVISDVQMEGI 60

		           M+   +L+ +DDA++R  L   L  A YD     +A      + A   DLV++DV M   

		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60

		

		Query: 61  GGIGLLNYLQQHQPKLPVLLMTAYATIDNAVNAMKLGAVDYLAKPFSPEVLLNQVSRYL- 119

		               LL  +++ +P LPVL+M+A  T   A+ A + GA DYL KPF    L+  + R L 

		Sbjct: 61  NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120

		

		Query: 120 ---------PAKAAEGTPIVADEKSL-ALLALAQRVAASDASVMIMGPSGSGKEVLARFI 169

		                       + +G P+V    ++  +  +  R+  +D ++MI G SG+GKE++AR +

		Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180

		

		Query: 170 HQNSQRAEQPFIAINCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTLLLDEI 229

		           H   +R   PF+AIN AAIP +++E+ LFG+EKGAFTGA     G+FEQA+GGTL LDEI

		Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240

		

		Query: 230 SEMEVGLQAKLLRVLQEREVERLGGRKTIKLDVRVLATSNRDLKAMAASGEFREDLYYRI 289

		            +M +  Q +LLRVLQ+ E   +GGR  I+ DVR++A +N+DLK     G FREDLYYR+

		Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300

		

		Query: 290 NVFPLTWPSLNQRPADILPLARHLLQRHALIANRSELPLLSECASRRLLTHRWPGNVREL 349

		           NV PL  P L  R  DI  L RH +Q+        ++    + A   +  H WPGNVREL

		Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAE--KEGLDVKRFDQEALELMKAHPWPGNVREL 358

		

		Query: 350 DNVVQRALIMCGSHEITAADIIID--SLELDFNLESTPLAD------------------- 388

		           +N+V+R   +     IT   I  +  S   D  +E                         

		Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418

		

		Query: 389 --NKPTELDGLGDELKAQEHVIILETLTQCNGSRKLVAEKLGISARTLRYKMAKMRDSGI 446

		             +           L   E+ +IL  LT   G++   A+ LG++  TLR K+ ++   G+

		Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL---GV 475

		

		Query: 447 QIP 449

		            + 

		Sbjct: 476 SVY 478

		

		

		>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE

		           signature.

		          Length = 103

		

		 Score = 53.9 bits (129), Expect = 6e-13

		 Identities = 28/71 (39%), Positives = 44/71 (61%)

		

		Query: 40  FGQLLSQAVGNVSELQSNASNLATRLDMGDTTVTLSDTVIAREKSSVAFEATVQVRNKLV 99

		           F   L  A+  +S+ Q+ A   A +  +G+  V L+D +   +K+SV+ +  +QVRNKLV

		Sbjct: 33  FAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLV 92

		

		Query: 100 EAYKEIMSMPV 110

		            AY+E+MSM V

		Sbjct: 93  AAYQEVMSMQV 103

		

		

		>FLGMRINGFLIF#Flagellar M-ring protein signature.

		          Length = 559

		

		 Score =  301 bits (773), Expect = 1e-97

		 Identities = 150/562 (26%), Positives = 257/562 (45%), Gaps = 47/562 (8%)

		

		Query: 30  LGGVDMLRQVTMILALAICLALAVFVMIWAQEPEYRPL-GQMSTAEMVQVLDVLDNNQVK 88

		           L  +    ++ +I+A +  +A+ V +++WA+ P+YR L   +S  +   ++  L    + 

		Sbjct: 16  LNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIP 75

		

		Query: 89  YEIQGD--VVKVPEDKFQDVRMLLSREGLDNTDANNDFLNKDSGFGVSQRMEQARLKHSQ 146

		           Y        ++VP DK  ++R+ L+++GL    A    L     FG+SQ  EQ   + + 

		Sbjct: 76  YRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRAL 135

		

		Query: 147 EQNLARIIEELKSVTRAKVILALPKENVFARNRSKPSATVVVSTRRS-GLSQEEVDSIVD 205

		           E  LAR IE L  V  A+V LA+PK ++F R +  PSA+V V+      L + ++ ++V 

		Sbjct: 136 EGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVH 195

		

		Query: 206 IVASAVHNLEPNKVTVTDANGRLLNSGTQDGSSAIARRELEIVQQKESEYRNKVESILMP 265

		           +V+SAV  L P  VT+ D +G LL      G       +L+     ES  + ++E+IL P

		Sbjct: 196 LVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDL-NDAQLKFANDVESRIQRRIEAILSP 254

		

		Query: 266 ILGPENFTSQVDVSMDFTAVEQTAKRYNPDLPSLRSEMVVENNS-----NGGTSGGIPGA 320

		           I+G  N  +QV   +DF   EQT + Y+P+  + ++ +     +       G  GG+PGA

		Sbjct: 255 IVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGA 314

		

		Query: 321 LSNQPP---------------MASDIPQEVNAEETVTRNSGSTHKEATRNFELDTTISHT 365

		           LSNQP                 A + PQ   +  + +    ST +  T N+E+D TI HT

		Sbjct: 315 LSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHT 374

		

		Query: 366 RQQIGTLRRVSVSVAVDFKNAPMAEDGSVNRVPRTEQELANIRRLLEGAVGFNTQRGDVI 425

		           +  +G + R+SV+V V++K     +      +P T  ++  I  L   A+GF+ +RGD +

		Sbjct: 375 KMNVGDIERLSVAVVVNYKTLADGKP-----LPLTADQMKQIEDLTREAMGFSDKRGDTL 429

		

		Query: 426 EVVTVPFMDQLIEAAPAPELWEQPWFWRVLRLVLGALVILVLILAVVRPMLKKLVYPDSV 485

		            VV  PF   +         W+Q  F   L      L++LV+   + R  ++  +     

		Sbjct: 430 NVVNSPF-SAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVE 488

		

		Query: 486 NMPDEPQRGGELAEIEDQYAADTLGMLQRPEAEYSYADDGSIL---IPNLHKDDDMIKAI 542

		                 ++     E E+               E   + D  +           + M + I

		Sbjct: 489 EAKAAQEQAQVRQETEE-------------AVEVRLSKDEQLQQRRANQRLGAEVMSQRI 535

		

		Query: 543 RALVANEPELSTQVVKNWLLED 564

		           R +  N+P +   V++ W+  D

		Sbjct: 536 REMSDNDPRVVALVIRQWMSND 557

		

		

		>FLGMOTORFLIG#Flagellar motor switch protein FliG signature.

		          Length = 344

		

		 Score =  287 bits (736), Expect = 1e-97

		 Identities = 108/341 (31%), Positives = 187/341 (54%)

		

		Query: 8   EAKTAPGFKPSELNGIEKTAILLLSLSESDAASILKYLEPKQVQKVGMAMAAMRDFGQEK 67

		           E K       S L G +K AILL+S+    ++ + KYL  ++++ +   +A +     E 

		Sbjct: 3   EKKEKEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSEL 62

		

		Query: 68  VIGVHKLFLDDIQKYSSIGFNSEEFVRKALTAALGEDKAGNLIEQIIMGSGAKGLDSLKW 127

		              V   F + +     I     ++ R+ L  +LG  KA ++I  +     ++  + ++ 

		Sbjct: 63  KDNVLLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRR 122

		

		Query: 128 MDARQVATIIQNEHPQIQTIVLSYLEPDQAAEIFAQFPENTRLDLMMRIANLEEVQPAAL 187

		            D   +   IQ EHPQ   ++LSYL+P +A+ I +  P   + ++  RIA ++   P  +

		Sbjct: 123 ADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVV 182

		

		Query: 188 QELNDIMEKQFAGQGGAQAAKMGGLKAAANIMNYLDTGVESHLMETMRESDEEMAQQIQD 247

		           +E+  ++EK+ A          GG+     I+N  D   E  ++E++ E D E+A++I+ 

		Sbjct: 183 REVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKK 242

		

		Query: 248 LMFVFENLSDVDDMGIQVLLREVQQDVLMKALKGADEQLKEKLLGNMSKRAAELLRDDLE 307

		            MFVFE++  +DD  IQ +LRE+    L KALK  D  ++EK+  NMSKRAA +L++D+E

		Sbjct: 243 KMFVFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDME 302

		

		Query: 308 AMGPIRISEVEVAQKEILSIARRLSDSGEIMLGGGGGEEFL 348

		            +GP R  +VE +Q++I+S+ R+L + GEI++  GG E+ L

		Sbjct: 303 FLGPTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343

		

		

		>FLGFLIH#Flagellar assembly protein FliH signature.

		          Length = 228

		

		 Score = 79.8 bits (196), Expect = 1e-19

		 Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 4/198 (2%)

		

		Query: 50  PLETETILPPTLSEIEDIRAHAEQEGFA---EGQEKGFTEGLEKGRLEGLEQGHGEGYSQ 106

		             E   I+ P  + IE+     EQ+      +  E+G+  G+ +GR +G +QG+ EG +Q

		Sbjct: 19  QAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQ 78

		

		Query: 107 GQQQGYEEGLKTAAEMLQRFENLLGQFEAPLALLDTEIEKELLTTSMTLAKAVIGHELKT 166

		           G +QG  E     A +  R + L+ +F+  L  LD+ I   L+  ++  A+ VIG     

		Sbjct: 79  GLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTV 138

		

		Query: 167 YPEHILSALRQGVDSLPIKEQRVNIRVTPSDEALIGELYSQTQLERNRWQIEADPSLSPG 226

		               ++  ++Q +   P+   +  +RV P D   + ++   T L  + W++  DP+L PG

		Sbjct: 139 DNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGAT-LSLHGWRLRGDPTLHPG 197

		

		Query: 227 DCIIDSVRSHIDMTVETR 244

		            C + +    +D +V TR

		Sbjct: 198 GCKVSADEGDLDASVATR 215

		

		

		>FLGFLIJ#Flagellar FliJ protein signature.

		          Length = 147

		

		 Score = 39.8 bits (92), Expect = 7e-07

		 Identities = 38/145 (26%), Positives = 71/145 (48%)

		

		Query: 1   MAKPDPLHMVLKLTQDAEEQASLQLRSAQLELQRRQNQLEALQNYRLDYMKQMEQQQGQS 60

		           MA+   L  +  L +   E A+  L   +   Q+ + QL+ L +Y+ +Y   +       

		Sbjct: 1   MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60

		

		Query: 61  ISASHYHQFHQFVRQVDAAIVQQVNAVKDADNQRQHRQVYWQEKQQKRKAVELLLANKAE 120

		           I+++ +  + QF++ ++ AI Q    +     +       W+EK+Q+ +A + L   ++ 

		Sbjct: 61  ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120

		

		Query: 121 KAKLAELRAEQKMVDEFASQQFYRK 145

		            A LAE R +QK +DEFA +   RK

		Sbjct: 121 AALLAENRLDQKKMDEFAQRAAMRK 145

		

		

		>FLGHOOKFLIK#Flagellar hook-length control protein signature.

		          Length = 375

		

		 Score = 45.6 bits (107), Expect = 3e-07

		 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

		

		Query: 376 MNQQLITMVSNGVQHAEIRLDPPELGHMMVRIQVQGDTTQVQFQVSQHQTRDLVEQAMPR 435

		           ++Q +      G Q AE+RL P +LG + + ++V  +  Q+Q        R  +E A+P 

		Sbjct: 244 LSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPV 303

		

		Query: 436 LREMLAEQGMQLTDGQVSQGSGGNSDGEQGSGRGNDNGMAETDEISAEE 484

		           LR  LAE G+QL    +S G   +   +  S +      A  + ++ E+

		Sbjct: 304 LRTQLAESGIQLGQSNIS-GESFSGQQQAASQQQQSQRTANHEPLAGED 351

		

		

		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.

		          Length = 344

		

		 Score =  249 bits (638), Expect = 4e-83

		 Identities = 86/326 (26%), Positives = 168/326 (51%), Gaps = 11/326 (3%)

		

		Query: 1   MSDLLSQDEIDALLHGVDDVEEDIID----DNELDARSYDFSSQDRIVRGRMPTLEIVNE 56

		           M+++LSQDEID LL  +   +  I D     +      YDF   D+  + +M TL +++E

		Sbjct: 1   MTEVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHE 60

		

		Query: 57  RFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITME 116

		            FAR    S+   +R    V +  V  L + E++ ++  P++L ++   PLKG A++ ++

		Sbjct: 61  TFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVD 120

		

		Query: 117 ARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVQFDY 176

		             + F ++D  FGG G+       R+ T  E  +++ ++  I  + +++W  V+D++   

		Sbjct: 121 PSITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRL 178

		

		Query: 177 LDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYSMIEPIRELLDAG--VQSD 234

		              E NP  A IV P+E+VV+ +   +V    G  +  +PY  IEPI   L +     S 

		Sbjct: 179 GQIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSV 238

		

		Query: 235 TQDTDMRWSQALRDEIMDVDVGIDATIVEHKVTLKQVLEFKAGDVIPVE---LPEYIILK 291

		            + +  ++   LRD++  VD+ + A +   +++++ +L  + GD+I +    + +  +L 

		Sbjct: 239 RRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLS 298

		

		Query: 292 VEDLPTYRCKMGRTKENLALKICEQI 317

		           + +   + C+ G   + +A +I E+I

		Sbjct: 299 IGNRKKFLCQPGVVGKKIAAQILERI 324

		

		

		>FLGMOTORFLIN#Flagellar motor switch protein FliN signature.

		          Length = 137

		

		 Score =  114 bits (287), Expect = 4e-36

		 Identities = 56/119 (47%), Positives = 81/119 (68%)

		

		Query: 6   DDWASAMAEQAIDEAKAVEFDEFSNESAPLSEDEVSKLDAIMDIPVTISMEVGRSFINIR 65

		           D WA A+ EQ     K+     F           +  +D IMDIPV +++E+GR+ + I+

		Sbjct: 17  DLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIK 76

		

		Query: 66  NLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKL 124

		            LL+L QGSVV LD +AGEPLD+++NG LIA GEVVVV DK+G+R+TD+I+ +ER+++L

		Sbjct: 77  ELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 26.7 bits (59), Expect = 0.030

		 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 20/110 (18%)

		

		Query: 21  EIYKELNTCRDFGLKDQMTRAAVSIASNIAEGEERES------RAESARFLYFAKGSSGE 74

		           ++Y      RDF   D +  A + +   I   + + +       A  A +  +  G+S  

		Sbjct: 206 DVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSP 265

		

		Query: 75  LATQIYIAIEIGVIEKKAGLNLIKEAREISAMLGALIKIRKGCVRETSAD 124

		           +    YI      +E   G+   K           ++ ++ G V ETSAD

		Sbjct: 266 VELMDYIQA----LEDALGIEAKKN----------MLPLQPGDVLETSAD 301

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score =  175 bits (446), Expect = 5e-54

		 Identities = 82/374 (21%), Positives = 144/374 (38%), Gaps = 66/374 (17%)

		

		Query: 1   MKILVTGGAGFIGSAVVRHIINNTQDSVINVDKLT--YAGNL-ESLASIESNERYVFEQV 57

		           MK LVTG AGFIG  V + ++      V+ +D L   Y  +L ++   + +   + F ++

		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59

		

		Query: 58  DICDRAELDRVFVKCKPDAVMHLAAESHVDRSITGPADFIQTNIVGTYTLLEATRAYWNT 117

		           D+ DR  +  +F     + V        V  S+  P  +  +N+ G   +LE  R     

		Sbjct: 60  DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN--- 116

		

		Query: 118 LAEDAKKAFRFHHISTDEVYGDLPHPDDIEDETEPSTGKEPSADNEPSANKSLPLFTETT 177

		                 K     + S+  VYG                            N+ +P  T+ +

		Sbjct: 117 ------KIQHLLYASSSSVYG---------------------------LNRKMPFSTDDS 143

		

		Query: 178 SYEPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGK 237

		              P S Y+A+K +++ +   +   YGLP         YGP+  P+  +       LEGK

		Sbjct: 144 VDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGK 203

		

		Query: 238 PLPIYGKGDQIRDWLYVEDHARALYKVV------------------TEGVVGETYNIGGH 279

		            + +Y  G   RD+ Y++D A A+ ++                           YNIG  

		Sbjct: 204 SIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNS 263

		

		Query: 280 NEKQNLEVVQTICAILDSLVPKETKYKEQITYVTDRPGHDRRYAIDSSKMQRELGWTPIE 339

		           +  + ++ +Q +   L     K          +  +PG     + D+  +   +G+TP  

		Sbjct: 264 SPVELMDYIQALEDALGIEAKKN--------MLPLQPGDVLETSADTKALYEVIGFTPET 315

		

		Query: 340 TFETGLKKTIEWYL 353

		           T + G+K  + WY 

		Sbjct: 316 TVKDGVKNFVNWYR 329

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 51.3 bits (123), Expect = 1e-09

		 Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 43/244 (17%)

		

		Query: 1   MRVLITGCNGQVGCSLTEQLAKDTNTTVLALD--RDY----------------------L 36

		           M+ L+TG  G +G  ++++L +  +  V+ +D   DY                      +

		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59

		

		Query: 37  DITNLDAVHAAVVEFKPSIIINAAAHTAVDKAEEEVELSYAINRDGPKYLAQAAQDVG-A 95

		           D+ + + +           +  +    AV  + E        N  G   + +  +     

		Sbjct: 60  DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119

		

		Query: 96  AILHISTDYVFEGNKVGEYVESD-TTNPQGVYGESKLAGEVAVAQACDKHI------ILR 148

		            +L+ S+  V+  N+   +   D   +P  +Y  +K A E+        H+       LR

		Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTY--SHLYGLPATGLR 177

		

		Query: 149 TAWVFGENGN------NFVKTMLRLGTTRDALNVVGDQFGGPTYAGDIANALIQIANRIT 202

		              V+G  G        F K ML  G + D  N  G      TY  DIA A+I++ + I 

		Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLE-GKSIDVYN-YGKMKRDFTYIDDIAEAIIRLQDVIP 235

		

		Query: 203 QGDA 206

		             D 

		Sbjct: 236 HADT 239

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score =  561 bits (1447), Expect = 0.0

		 Identities = 225/333 (67%), Positives = 270/333 (81%), Gaps = 1/333 (0%)

		

		Query: 1   MKYLVTGAAGFIGSKVSERLCAAGHEVVGIDNINDYYDVNLKLDRLKNLQSQTLFSFKKL 60

		           MKYLVTGAAGFIG  VS+RL  AGH+VVGIDN+NDYYDV+LK  RL+ L     F F K+

		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP-GFQFHKI 59

		

		Query: 61  DLADREGIATLFAEEGFDRVIHLAAQAGVRYSIDNPMAYADSNLVGHLTILEGCRHHKIQ 120

		           DLADREG+  LFA   F+RV     +  VRYS++NP AYADSNL G L ILEGCRH+KIQ

		Sbjct: 60  DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119

		

		Query: 121 HLVYASSSSVYGLNSKMPFSTDDSVDHPISLYAATKKANELMSHTYSHLYGVPTTGLRFF 180

		           HL+YASSSSVYGLN KMPFSTDDSVDHP+SLYAATKKANELM+HTYSHLYG+P TGLRFF

		Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179

		

		Query: 181 TVYGPWSRPDMALLKFTNKIVKGEAIDVYNHGNLSRDFTYIDDIVEGIIRIQDSVPVANP 240

		           TVYGPW RPDMAL KFT  +++G++IDVYN+G + RDFTYIDDI E IIR+QD +P A+ 

		Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADT 239

		

		Query: 241 EWNAAEATPATSSAPYRVFNIGNGSPVKLMDYISALEKSLGIEAIKNMMDMQPGDVHSTW 300

		           +W     TPA S APYRV+NIGN SPV+LMDYI ALE +LGIEA KNM+ +QPGDV  T 

		Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETS 299

		

		Query: 301 ADTEDLFKTVGYKPQTSVEEGVQKFVEWYKEYY 333

		           ADT+ L++ +G+ P+T+V++GV+ FV WY+++Y

		Sbjct: 300 ADTKALYEVIGFTPETTVKDGVKNFVNWYRDFY 332

		

		

		>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein

		          signature.

		          Length = 166

		

		 Score = 43.3 bits (102), Expect = 4e-08

		 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

		

		Query: 8  GTFDLFHYGHVRLFKRLKALGDKLIVAVSTDEFNALKGKAAFFSYFQRAEIVEAC 62

		          G+FD   +GH+ + +R   L D++ VAV  +       K   FS  +R E +   

		Sbjct: 7  GSFDPITFGHLDIIERGCRLFDQVYVAVLRN-----PNKQPMFSVQERLEQIAKA 56

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 59.7 bits (144), Expect = 7e-11

		 Identities = 50/279 (17%), Positives = 97/279 (34%), Gaps = 27/279 (9%)

		

		Query: 578  PKTEPKKQDKDSRNQGRNNNRRNNN---RRNDPRRNRNDNRSDSRNDSRNDSEQSKDKRA 634

		            P+ E + Q  D+ N    NN + +      N+    R D            SE + +  A

		Sbjct: 983  PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT-ETVA 1041

		

		Query: 635  KSSRSDSSDTRLPTEDTNKRQPRNEKVRKDTKSEAP----TTEQPKQEAARERRQRRNMR 690

		            ++S+ +S       +D  +   +N +V K+ KS       T E  +  +  +  Q    +

		Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101

		

		Query: 691  --------RKVRVNNEQQEELKAEVAATEAPVQAKPSNDDKPARPKRQPRKPKAKAETVD 742

		                     K +V  E+ +E   +V +  +P Q +     +  +P+ +P +       + 

		Sbjct: 1102 ETATVEKEEKAKVETEKTQE-VPKVTSQVSPKQEQS----ETVQPQAEPARENDPTVNIK 1156

		

		Query: 743  VEAVEQIETAGSVESAVQAPEAPKTAVETKVETETT--AIETAIEATEDAVATEDN---A 797

		                +   TA + + A +     +  V       T    +E     T        N   +

		Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216

		

		Query: 798  REPREGQRRSRRS-PRHLRAAGQRRRRDEDAQQNEDGSS 835

		             +P+   RRS RS P ++  A             +  S+

		Sbjct: 1217 NKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTST 1255

		

		

		>PF07675#Cleaved Adhesin

		          Length = 1358

		

		 Score = 34.3 bits (78), Expect = 7e-04

		 Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 16/137 (11%)

		

		Query: 119 SENLHIDFPIYRNNNGTL--ELAVGKANSNQ--DNREWAISDPKGLRSWIKDSSTYGNSA 174

		           +EN + D  I R+N   +  ++  G+ +  Q   N        K    W   S+     +

		Sbjct: 304 TENGNYDVVITRSNYLPVIKQIQAGEPSPYQPVSNLTATAQGQKVTLKWDAPSAKKAEGS 363

		

		Query: 175 ELKQQQFNRLVRYVKRWRDHKFTDDSVRSKVYSIGLTVMLKADFVWALDDDGYPDDLKAL 234

		                      R VKR  D  F      + V +    V+L AD VW  D+ GY   L A 

		Sbjct: 364 -----------REVKRIGDGLFVTIEPANDVRANEAKVVLAADNVWG-DNTGYQFLLDAD 411

		

		Query: 235 RDTISSVISTNYFRFIG 251

		            +T  SVI      F G

		Sbjct: 412 HNTFGSVIPATGPLFTG 428

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 32.4 bits (73), Expect = 0.002

		 Identities = 11/44 (25%), Positives = 18/44 (40%)

		

		Query: 31  PIALVGPNGAGKTTLFSLLCGYITPTSGEVSLLGHKPGSPELLG 74

		            + L G  G GK+TL + L G    +     +   K    ++ G

		Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAG 641

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 79.1 bits (195), Expect = 1e-20

		 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

		

		Query: 1   MKKARILVVDDDPVCSSLLLSILGD-DYQVTTVNTGCDVADIANIQRPDVIFLDIMMPGK 59

		           M  A ILV DDD    ++L   L    Y V   +    +         D++  D++MP +

		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60

		

		Query: 60  NGYQVLKDLKQ-DPQTSKLPVIIVSALSEQSDENLALRIGADGYITKPIVP 109

		           N + +L  +K+  P    LPV+++SA +       A   GA  Y+ KP   

		Sbjct: 61  NAFDLLPRIKKARPD---LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDL 108

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 60.2 bits (146), Expect = 2e-11

		 Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

		

		Query: 698 VLVVEDNKVNQQVVSINLNKLNLPYLIANDGREALEHYKRHIGNFSVILMDCMMPVMDGF 757

		           +LV +D+   + V++  L++      I ++            G+  +++ D +MP  + F

		Sbjct: 6   ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPDENAF 63

		

		Query: 758 EATRAIREFEKEEDAKRVQIIALTASILDDDIQKCFDSGMDDYLPKPFKREVLVDKLAK 816

		           +    I+     +    + ++ ++A        K  + G  DYLPKPF    L+  + +

		Sbjct: 64  DLLPRIK-----KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117