>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 6e-04 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 18/88 (20%) Query: 217 ARIPAGVLLEGPPGTGKTLLAKAV---AGEAGVPFFS-----ISGSDFVEMFVGV----- 263 + +++ G GTGK L+A+A+ PF + I G Sbjct: 157 MQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAF 216 Query: 264 -GASRVRS-LFEDAKKAAPAIIFIDEID 289 GA + FE A+ +F+DEI Sbjct: 217 TGAQTRSTGRFEQAEGGT---LFLDEIG 241
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 26.9 bits (59), Expect = 0.023 Identities = 18/65 (27%), Positives = 23/65 (35%) Query: 34 GAITGAAYAALAAAGGGGLQLVLASYGLRSALVAGIVKGLGVLGIHIGNAFANTVIRSIA 93 G ITG A +AA G + L A+ A G V G V G + F + Sbjct: 233 GHITGGRAAGVAAMQGAVVHLQRATIRRGDAPAGGAVPGGAVPGGAVPGGFGPGGFGPVL 292 Query: 94 SAGIG 98 G Sbjct: 293 DGWYG 297
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 67.4 bits (164), Expect = 7e-14 Identities = 53/298 (17%), Positives = 98/298 (32%), Gaps = 17/298 (5%) Query: 11 LASVAILGAGFVASQPTVVRAEEAPVASQSKAEKDYDAAMEKYKAAEEDLKKAEAAQRKY 70 ++ +LGAG V + T + A + EK E+ E + + Sbjct: 23 AVALTVLGAGLVVN--TNEVSAVATRSQTDTLEKVQ----ERADKFEIENNTLKLKNSDL 76 Query: 71 DEDQKKTEEKAKETEEASKRQQAANLKYQLKLREYLKYIQEKNKEK--IAKAEKEMNEAK 128 + K ++ E E + K L E IQE K + KA + Sbjct: 77 SFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFS 136 Query: 129 QEEDKEKANLNKVLAKVIPSDRELEKTRQEAEKAKKNIPELKKKVEEAKQKVDAAKQKVD 188 + + L A + +LEK + A K +E K ++A + +++ Sbjct: 137 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 196 Query: 189 AEHAKEVAPQAKIAELENQVHRLEQDLKDINESDSEDYVKEGLRAPLQSELDTKKAKLLK 248 + + + + L L L+ ++ A K Sbjct: 197 KALEGAMNFSTADSAKIKTLEAEKAALAARKAD---------LEKALEGAMNFSTADSAK 247 Query: 249 LEELSGKIEELDAEIAELEVQLKDAEGNNNVEAYFKEGLEKTTAEKKAELEKAEADLK 306 ++ L + L+A AELE L+ A + ++ + LE A +AE E + Sbjct: 248 IKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQ 305 Score = 67.0 bits (163), Expect = 9e-14 Identities = 65/360 (18%), Positives = 119/360 (33%), Gaps = 49/360 (13%) Query: 37 ASQSKAEKDYDAAMEKYKAAEEDLKKAEAAQRKYDEDQKKTEEKAKETEEASKRQQAANL 96 A ++ E + + A A + + ++ + + E+A + + Sbjct: 183 AEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFST 242 Query: 97 KYQLKLREYLKYIQEKNKEKIAKAEKEMNEAKQEEDKEKANLNKVLAKVIPSDRELEKTR 156 K++ + + A+ EK + A + A + + A+ + E Sbjct: 243 ADSAKIKTLEAEKAAL-EARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLE 301 Query: 157 QEAEKAKKNIPEL----------KKKVEEAKQKVDAAKQKVDAE----HAKEVAPQAKIA 202 +++ N L KK++E QK++ + +A A + Sbjct: 302 HQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKK 361 Query: 203 ELENQVHRLEQDLKDINESDSEDYVKEGLRAPLQSELDTKKAKLLKLEELSGKIEELDAE 262 +LE + +LE+ K + ++ LR L + + KK LEE + K+ L+ Sbjct: 362 QLEAEHQKLEEQNK------ISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKL 415 Query: 263 IAELEVQLKDAEGNNNVEAYFKEGLEKTTAEKKAELEKAEADLKKAVDEPETPAPAPAPA 322 ELE K EK AE +A+LE LK+ + + Sbjct: 416 NKELEESKKLT--------------EKEKAELQAKLEAEAKALKEKLAKQA--------- 452 Query: 323 PAPTPEAPAPAPAPAPAPKPAPAPKPAPAPKPAPAPKPAPAPKPAPAPAPKPEKPAEKPA 382 E A A + P KP P P KP AP E + P+ Sbjct: 453 -----EELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPS 507 Score = 67.0 bits (163), Expect = 1e-13 Identities = 68/383 (17%), Positives = 119/383 (31%), Gaps = 23/383 (6%) Query: 37 ASQSKAEKDYDAAMEKYKAAEEDLKKAEAAQRKYDEDQKKTEEKAKETEEASKRQQAANL 96 A ++ EK + AM A +K EA + + E+ + S A Sbjct: 120 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIK 179 Query: 97 KYQLKLR-------------EYLKYIQEKNKEKIAKAEKEMNEAKQEEDKEKANLNKVLA 143 + + E + KI E E + + L + Sbjct: 180 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239 Query: 144 KVIPSDRELEKTRQEAEKAKKNIPELKKKVEEAKQKVDAAKQKVDAEHAKEVAPQAKIAE 203 +++ E + EL+K +E A A K+ A++ A +A+ A+ Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299 Query: 204 LENQVHRLEQDLKDINES-DSEDYVKEGLRAPLQSELDTKKAKLLKLEELSGKIEELDAE 262 LE+Q L + + + D+ K+ L A Q + K + L ++ Sbjct: 300 LEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREA 359 Query: 263 IAELEVQLKDAEGNNNVEAYFKEG----LEKTTAEKK---AELEKAEADLKKAVDEPETP 315 +LE + + E N + ++ L+ + KK LE+A + L + Sbjct: 360 KKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKEL 419 Query: 316 APAPAPAPAPTPEAPAPAPAPAPAPK-PAPAPKPAPAPKPAPAPKPAPAPKPAPAPAPKP 374 + E A A A A K A A + P P P Sbjct: 420 EESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNKAVP 479 Query: 375 EKPAEKPAPAPKPETPKTGWKQE 397 + P KP K K+ Sbjct: 480 -GKGQAPQAGTKPNQNKAPMKET 501
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 24.7 bits (53), Expect = 0.047 Identities = 11/43 (25%), Positives = 22/43 (51%) Query: 31 SELEGRITARQLVEENRPEYNIEYIELLSDKLLDYEKETGAFE 73 S+LE R+ Q + E++ E I+ + L + ++ T +E Sbjct: 102 SQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYE 144
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.3 bits (68), Expect = 0.002 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Query: 48 LAYDGAEVIGFLAVQENLFE-AEVLQIAVKGAYQGQGIASAL------FAQLPTDKEIFL 100 L Y IG + ++ N A + IAV Y+ +G+ +AL +A+ + L Sbjct: 69 LYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLML 128 Query: 101 EVRQSNQRAQAFYKK 115 E + N A FY K Sbjct: 129 ETQDINISACHFYAK 143
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.3 bits (91), Expect = 7e-05 Identities = 34/197 (17%), Positives = 72/197 (36%), Gaps = 18/197 (9%) Query: 526 DTKDRMVDTASGLKEQVKDLPTNARYA-VYQGKSKVKENVRDLTSSISQTKADRASG--R 582 D + KE ++ N + V Q S+ KE T + + + + Sbjct: 1057 DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET 1116 Query: 583 KEQQEQRRKT--IAKRRSEMEQVKQKKQPASSVHERPTTRQEQYHDEQTSKQSNIQTSYK 640 ++ QE + T ++ ++ + E V+ + +PA PT ++ QT+ ++ Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARE--NDPTVNIKEP-QSQTNTTAD------ 1167 Query: 641 ESQQAKQERPAVKSDFSSPKVERQGNTVQEKTVQKPATSTTTADRTSQRPITKERPSTVQ 700 Q AK+ V+ + GN+V E P +T + + + +P Sbjct: 1168 TEQPAKETSSNVEQPVTESTTVNTGNSVVE----NPENTTPATTQPTVNSESSNKPKNRH 1223 Query: 701 RVPLQNTRSRPPIKTAT 717 R +++ T + Sbjct: 1224 RRSVRSVPHNVEPATTS 1240
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 1111 bits (2876), Expect = 0.0 Identities = 633/639 (99%), Positives = 636/639 (99%) Query: 6 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 65 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 66 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 125 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 Query: 126 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 185 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE Sbjct: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180 Query: 186 GNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYS 245 GNDDLLEKYMSGKSLEALELEQEESIRF NCSLFP+YHGSAK+NIGIDNLIEVITNKFYS Sbjct: 181 GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYS 240 Query: 246 STHRGPSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSING 305 STHRG SELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSING Sbjct: 241 STHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSING 300 Query: 306 ELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREM 365 ELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREM Sbjct: 301 ELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREM 360 Query: 366 LLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 425 LLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY Sbjct: 361 LLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Query: 426 MERPLKKAEYTIHIEVPPNPFWASIGLSVAQLPLGSGMQYESSVSLGYLNQSFQNAVMEG 485 MERPLKKAEYTIHIEVPPNPFWASIGLSV+ LPLGSGMQYESSVSLGYLNQSFQNAVMEG Sbjct: 421 MERPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 480 Query: 486 IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL 545 IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL Sbjct: 481 IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL 540 Query: 546 SFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR 605 SFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR Sbjct: 541 SFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR 600 Query: 606 SVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKIT 644 SVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKIT Sbjct: 601 SVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKIT 639
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 27.3 bits (60), Expect = 0.032 Identities = 8/55 (14%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Query: 133 RGKKGGRPSKGKLSIDLALKMYDSKEY---SIRQILDASKLSKTTFYRYLNKRNA 184 + K+ + ++ + +D+AL+++ + S+ +I A+ +++ Y + ++ Sbjct: 4 KTKQEAQETRQHI-LDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSD 57
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 11/34 (32%), Positives = 15/34 (44%) Query: 12 TLLGPSGCGKTTLLRMIAGFNSIKDGEFYFDDTK 45 L G G GK+TL+ + G + D F K Sbjct: 600 VLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 42.2 bits (99), Expect = 8e-08 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 3/108 (2%) Query: 18 LYQAVGWTNYTHQPEMLEQALSHSLVIYLALDGDAVVGLIRLVGDGFSSVLVQDLIVLPI 77 + + Y + +L + +G I++ + L++D+ V Sbjct: 41 RFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKD 100 Query: 78 YQRQGIGSALMKEALEDYKDAYQVQLVTEETERTLG---FYRSMGFEI 122 Y+++G+G+AL+ +A+E K+ + L+ E + + FY F I Sbjct: 101 YRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 619 bits (1597), Expect = 0.0 Identities = 181/667 (27%), Positives = 296/667 (44%), Gaps = 57/667 (8%) Query: 9 KTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERGITITSAAT 68 K NIG++AHVDAGKTT TE +LY +G I ++G +G ++ D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TAQWNNHRVNIIDTPGHVDFTIEVQRSLRVLDGAVTVLDSQSGVEPQTETVWRQATEYGV 128 + QW N +VNIIDTPGH+DF EV RSL VLDGA+ ++ ++ GV+ QT ++ + G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRIVFANKMDKIGADFLYSVSTLHDRLQANAHPIQLPIGSEDDFRGIIDLIKMKAEIYTN 188 P I F NK+D+ G D + ++L A +IK K E+Y N Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEI------------------VIKQKVELYPN 163 Query: 189 DLGTDILEEDIPAEYLDQAQEYREKLIEAVAETDEELMMKYLEGEEITNEELKAGIRKAT 248 T+ E + + V E +++L+ KY+ G+ + EL+ Sbjct: 164 MCVTNFTESE---------------QWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRF 208 Query: 249 INVEFFPVLCGSAFKNKGVQLMLDAVIDYLPSPLDIPAIKGINPDTDAEETRPASDEEPF 308 N FPV GSA N G+ +++ + + S + Sbjct: 209 HNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH-------------------RGQSEL 249 Query: 309 AALAFKIMTDPFVGRLTFFRVYSGVLQSGSYVLNTSKGKRERIGRILQMHANSRQEIDTV 368 FKI RL + R+YSGVL V + K K +I + +ID Sbjct: 250 CGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKA 308 Query: 369 YSGDIAAAVGLKDTTTGDSLTDEKSKIILESINVPEPVIQLMVEPKSKADQDKMGIALQK 428 YSG+I + L D K E I P P++Q VEP ++ + AL + Sbjct: 309 YSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLE 367 Query: 429 LAEEDPTFRVETNVETGETVISGMGELHLDVLVDRMRREFKVEANVGAPQVSYRETFRAS 488 +++ DP R + T E ++S +G++ ++V ++ ++ VE + P V Y E R Sbjct: 368 ISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME--RPL 425 Query: 489 TQARGFFKRQSGGKGQFGDVWIEFTPNEEGKGFEFENAIVGGVVPREFIPAVEKGLVESM 548 +A + + + + +P G G ++E+++ G + + F AV +G+ Sbjct: 426 KKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGC 485 Query: 549 ANGVLAGYPMVDVKAKLYDGSYHDVDSSETAFKIAASLSLKEAAKSAQPAILEPMMLVTI 608 G L G+ + D K G Y+ S+ F++ A + L++ K A +LEP + I Sbjct: 486 EQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKI 544 Query: 609 TVPEENLGDVMGHVTARRGRVDGMEAHGNSQIVRAYVPLAEMFGYATVLRSASQGRGTFM 668 P+E L + + N I+ +P + Y + L + GR + Sbjct: 545 YAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGRSVCL 604 Query: 669 MVFDHYE 675 Y Sbjct: 605 TELKGYH 611
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.9 bits (64), Expect = 0.005 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 6/87 (6%) Query: 19 FAREMLESGLVAE-IRCQKGNLKYEYFLPIEKE--GTILLIDQWINQ-KALDEHHQSKTM 74 F R LE L + + Q+ N + FL KE G L ++ + K + + K Sbjct: 551 FVRRNLEDKLTTKGLSPQEANKLIKDFLSSNKELVGKTLNFNKAVADAKNTGNYDEVKKA 610 Query: 75 QKILD--LRKKYHLQMQVERYIEDDSG 99 QK L+ LRK+ HL+ +VE+ +E SG Sbjct: 611 QKDLEKSLRKREHLEKEVEKKLESKSG 637
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 252 bits (646), Expect = 1e-85 Identities = 68/238 (28%), Positives = 126/238 (52%), Gaps = 14/238 (5%) Query: 52 ISNKVWICWFQGEERPPELIRTCIQSMRTHFLGREIIVLTEENISDYIDIPDYITDKYKK 111 ++ICW QG E+ P +++ C+ S++ + ++I++ N +++DIPD++ ++++ Sbjct: 67 RQKYIFICWLQGIEKAPYIVQQCVASVKKNSGDFKVIIIDGNNYKEWVDIPDFLIKRWQE 126 Query: 112 GSISRAHYSDILRVELLCRYGGLWVDVTVLNTGGDFSNLELPLFVYKS----LDLSRKDS 167 G + A +SDILR+ LLC+YGGLW+D TV + ++P ++ +S S +S Sbjct: 127 GKMLDAWFSDILRLFLLCKYGGLWIDATV------YMFDKVPNYIVESNRFMFQSSFLES 180 Query: 168 QAIVASSWLISSYS-NHPILLYARKLLWEYWRRKNSLCNYFLFHIFFTIATEL--YPIEW 224 + S+WLI S N P L+ + + Y ++K +Y++FH F ++ Y W Sbjct: 181 ETTHISNWLIFVKSKNDPFLVGLKNSMVTYLKKKEKPADYYIFHDFVSVMAVSKEYSKYW 240 Query: 225 SAVLTFNNHSPHMFNFELNNQFSEKRWEQLKQISVFHKLNHHIDY-SIGVNNFYKFIV 281 + NN +PHM + N + + +K S KL + +DY ++ N +Y I Sbjct: 241 KEIPYVNNVNPHMLQYLGNLPYDNSMFNYIKSTSPVQKLTYKLDYNNLKRNTYYDHIF 298
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 2e-04 Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 9/91 (9%) Query: 244 ILQELISNTLRHA-----QASCLDVYLYQTDVELQLKVVDNGIGFQLGSLDDLSYGLRNI 298 ++Q L+ N ++H Q + + + + + L+V + G + + GL+N+ Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNV 318 Query: 299 KERVEDMAG---TVQLLTAPKQGLAVDIRIP 326 +ER++ + G ++L + A+ + IP Sbjct: 319 RERLQMLYGTEAQIKLSEKQGKVNAM-VLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 65.2 bits (159), Expect = 1e-14 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 4/116 (3%) Query: 2 KILLVDDHEMVRLGLKSYFDLQD-DVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMN 60 IL+ DD +R L DV + N + D++V D+VMP+ N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITS---NAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 61 GIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSSADELLHAVSK 116 D I K P+ +L++++ + + GA Y+ K EL+ + + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 74.3 bits (182), Expect = 3e-17 Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 16/212 (7%) Query: 3 KIDNTLQYPYSTSAMVLSKYYGVADGMNVEGRGSANF-IKDNVLITAAHNYYRHDYGKEA 61 +I +T Y+ + + ++ + + L+T H +G Sbjct: 78 QITDTTNGHYAPVTYIQVEAPT-------GTFIASGVVVGKDTLLTNKH-VVDATHGDPH 129 Query: 62 DDIYVLPAVSPSQELFGKIKVKEVRYLKEFRNLNSKDAREYDLALLILEEPIGAKLGTLG 121 A++ G +++ A + + IG + Sbjct: 130 ALKAFPSAINQDNYPNGGFTAEQITKYSG----EGDLAI-VKFSPNEQNKHIGEVVKPAT 184 Query: 122 LPTSQKNLTGITVTITGYPSYNFKIHQMYTDKKQVLSDDGMFLDYQVDTLEGSSGSTVYD 181 + + + +T+TGYP + + M+ K ++ G + Y + T G+SGS V++ Sbjct: 185 MSNNAETQVNQNITVTGYP-GDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFN 243 Query: 182 ASHRVVGVHTLGDGANQINSAVKLNERNLPFI 213 + V+G+H G N+ N AV +NE F+ Sbjct: 244 EKNEVIGIHW-GGVPNEFNGAVFINENVRNFL 274
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 127 bits (319), Expect = 8e-38 Identities = 78/254 (30%), Positives = 134/254 (52%), Gaps = 13/254 (5%) Query: 3 LEHKNIFITGSSRGIGLAIAHKFAQAGANIV-LNSRGAISEELLAEFSNYGIKVVPISGD 61 +E K FITG+++GIG A+A A GA+I ++ E++++ D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 62 VSDFADAKRMIDQAIAELGSVDVLVNNAGITQDTLMLKMTEADFEKVLKVNLTGAFNMTQ 121 V D A + + E+G +D+LVN AG+ + L+ +++ ++E VN TG FN ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 122 SVLKPMMKAREGAIINMSSVVGLMGNIGQANYAASKAGLIGFTKSVAREVASRNIRVNVI 181 SV K MM R G+I+ + S + A YA+SKA + FTK + E+A NIR N++ Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 182 APGMIESDMTAIL------SDKIKEATLAQ----IPMKEFGQAEQVADLTVFLAGQD--Y 229 +PG E+DM L ++++ + +L IP+K+ + +AD +FL + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 230 LTGQVIAIDGGLSM 243 +T + +DGG ++ Sbjct: 246 ITMHNLCVDGGATL 259
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 27.5 bits (61), Expect = 0.023 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 9/56 (16%) Query: 72 EVPAPAEASVATEGN--LVESPLVGVVYLAAGPDKPAFVTVGDSVKKGQTLVIIEA 125 E+ A A + G ++ +V K V G+SV+KG L+ + A Sbjct: 81 EIVATANGKLTHSGRSKEIKPIENSIV-------KEIIVKEGESVRKGDVLLKLTA 129
>PF03309#Bvg accessory factor Length = 271 Score = 35.1 bits (81), Expect = 2e-04 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 14/126 (11%) Query: 11 IIGIDLGGTSIKFAILTTAGEIQ---GKWSIKTNILDEGSHIVDDMIESIQHRLDLLGLA 67 ++ ID+ T +++ +G+ +W I+T D++ +I L+G Sbjct: 2 LLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTA----DELALTI---DGLIGDD 54 Query: 68 AADFQGIGMGSPGVVDRDKGTVIGAYNLNWKTLQPIKQKIEKALGIPFFIDNDANVAALG 127 A G S V V W + + + GIP +DN V A Sbjct: 55 AERLTGASGLS--TVPSVLHEVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGA-- 110 Query: 128 ERWMGA 133 +R + Sbjct: 111 DRIVNC 116
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 80.1 bits (197), Expect = 5e-20 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 6/182 (3%) Query: 4 ILITGASGGLAQEMVKLLPND--QLILLGRNKEKLAQLYGNYS----HAELIEIDITDDS 57 ITGA+ G+ + + + L + + + N EKL ++ + HAE D+ D + Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 58 ALEALVTDLYLRYGKIDVLINNAGYGIFEGFDQIADKDIHQMFEVNTFALMNLSRHLAAR 117 A++ + + G ID+L+N AG ++D++ F VN+ + N SR ++ Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 118 MKESSKGHIINIVSMAGLIATGKSSLYSATKFAAIGFSNALRLELMPYGVYVTTVNPGPI 177 M + G I+ + S + + Y+++K AA+ F+ L LEL Y + V+PG Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 178 RT 179 T Sbjct: 191 ET 192
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.2 bits (96), Expect = 7e-06 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 2/122 (1%) Query: 2 SKDKKNEDKETLEELKELSEWQKRNQEYLKKKAE-EEAALAEEKEKERQARMGEESEKSE 60 + + +++E +E K + + E + +E +E E KE + + ++E Sbjct: 1058 ATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETE 1117 Query: 61 DKQDQESETDQEDSESAKEESEEKVASSEADKEKEEK-EEPESKEKEEQDKKLAKKATKE 119 Q+ T Q + + E+ + A + + +EP+S+ D + K T Sbjct: 1118 KTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSS 1177 Query: 120 KP 121 Sbjct: 1178 NV 1179 Score = 37.4 bits (86), Expect = 1e-04 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 21/124 (16%) Query: 12 TLEELKELSEWQKRNQEYLKKKAEEEAALAEEKEKERQARMGEESEKSEDKQD-QESETD 70 T E E + + +K E++A E Q R + KS K + Q +E Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDA-----TETTAQNREVAKEAKSNVKANTQTNEVA 1086 Query: 71 QEDSESAKEESEEKVASSEADKEKEEK---------EEP----ESKEKEEQDKKLAKKAT 117 Q SE+ +E++ A EKEEK E P + K+EQ + + +A Sbjct: 1087 QSGSET--KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144 Query: 118 KEKP 121 + Sbjct: 1145 PARE 1148 Score = 36.6 bits (84), Expect = 2e-04 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 7/80 (8%) Query: 54 EESEKSEDKQDQESETDQEDSESAKEE-------SEEKVASSEADKEKEEKEEPESKEKE 106 E +E + QES+T +++ + A E ++E ++ +A+ + E + S+ KE Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 107 EQDKKLAKKATKEKPAKAKI 126 Q + + AT EK KAK+ Sbjct: 1095 TQTTETKETATVEKEEKAKV 1114 Score = 29.3 bits (65), Expect = 0.040 Identities = 10/33 (30%), Positives = 15/33 (45%) Query: 354 ADKLIMEAEEKAKQEAKEAEKKQEEEQKKQEEE 386 + E +E E KE ++EE+ K E E Sbjct: 1085 VAQSGSETKETQTTETKETATVEKEEKAKVETE 1117
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.035 Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 7/145 (4%) Query: 415 SETKRFLKFFNILGVAVAIWGGIYGSFFGYELP-FHLISTTSDVMIILVVSVVFGFITVF 473 + ++ + +G V G + +I + ++ LV++ + Sbjct: 6 RQANKYYWYCQGIGWGVYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTHAYRSFIKR 65 Query: 474 AGLLASGLQKVRMKKYAEAYNSGFVWCVILLGLLFIAVGMLMPDMRLLFVLGKWVSIFNA 533 G L + ++ ++ G VW V + + + + + + + Sbjct: 66 QGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAF------TLPLALS 119 Query: 534 VGILVVSIIQAKSLSGIGAGLFNLY 558 + VV + SL G F Y Sbjct: 120 IIFNVVVVTFMWSLLYFGWHFFKNY 144
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 115 bits (289), Expect = 9e-36 Identities = 56/146 (38%), Positives = 85/146 (58%), Gaps = 2/146 (1%) Query: 1 MNKSEHRHQLIRALITKNKIHTQAELQTLLAENDIQVTQATLSRDIKNMNLSKVR-EKDS 59 MNK + RH IR +IT N+I TQ EL +L ++ VTQAT+SRDIK ++L KV S Sbjct: 1 MNKGQ-RHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGS 59 Query: 60 AYYVLNNGSISKWEKRLELYMEDALVWMRPVQHQVLLKTLPGLAQSFGSIIDTLSFPDAI 119 Y L +L+ + DA V + H ++LKT+PG AQ+ G+++D L + + + Sbjct: 60 YKYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIM 119 Query: 120 ATLCGNDVCLIICEDADTAQKCFEEL 145 T+CG+D LIIC D + +++ Sbjct: 120 GTICGDDTILIICRTHDDTKVVQKKI 145
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 48.7 bits (116), Expect = 1e-08 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Query: 134 GAIPIINENDSVVIDELKVGDNDTLSAQVAAMVQADLLVFLTDVDGLYTGNPNSDPRAKR 193 G +P+I E+ + E V D D ++A V AD+ + LTDV+G + R Sbjct: 195 GGVPVILEDGEIKGVE-AVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLR 253 Query: 194 LERIETINREIIDMAGGAGSSNGTGGMLTKIKAATIATESG 234 ++E + + + AGS M K+ AA E G Sbjct: 254 EVKVEELRKYYEEGHFKAGS------MGPKVLAAIRFIEWG 288
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 27.1 bits (60), Expect = 0.046 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 7 MKKVMFAGLSLLSLVVLMACGEEETKKTQAAQQPKQQTTVQQIS-----VGKDVPDFTLQ 61 MKK+ + LS ++L+AC K T + Q+ K T I+ + D D Sbjct: 1 MKKLGTLLVLFLSAIILVACA-SGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSI 59 Query: 62 SMDGKE 67 G++ Sbjct: 60 VPIGQD 65
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 228 bits (582), Expect = 1e-75 Identities = 86/315 (27%), Positives = 152/315 (48%), Gaps = 19/315 (6%) Query: 7 MKKQNLFLVLLSVFLLCLGAC-GQKESQTGKGMKIVTSFYPIYAMVKEVSGDLNDVR-MI 64 MKK LVL ++ + G+K++ +G+ +K+V + I + K ++GD D+ ++ Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60 Query: 65 QSSSGIHSFEPSANDIAAIYDADVFVYHSHTLES----WAGSLDPNLKKSKVKVLEASEG 120 H +EP D+ +AD+ Y+ LE+ W L N KK++ K A Sbjct: 61 PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVS- 119 Query: 121 MTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEKAGEEAQIIADKLSEVDSEHKETYQKN 180 G++ + +EK DPH WL+ E A+ IA +LS D +KE Y+KN Sbjct: 120 ------DGVDVIYLEGQ-NEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKN 172 Query: 181 AQAFIKKAQELTKKFQPKFEK--ATQKTFVTQHTAFSYLAKRFGLNQLGIAGISPEQEPS 238 + + K +L K+ + KF K A +K VT AF Y +K +G+ I I+ E+E + Sbjct: 173 LKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGT 232 Query: 239 PRQLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGV---GLKTLNPLESDPQNDKTY 295 P Q+ + E ++ KV ++F ES+ + +T+ + T + + + + +Y Sbjct: 233 PEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAEQGKEGDSY 292 Query: 296 LENLEENMSILAEEL 310 ++ N+ +AE L Sbjct: 293 YSMMKYNLDKIAEGL 307
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 31.9 bits (72), Expect = 0.013 Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 7/44 (15%) Query: 340 RYR-----SNHW--VPDSRPEEPSPQPSPSPQPAPNPQPAPSNP 376 RYR + W V P P P P P PQP PQP P P Sbjct: 553 RYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAP 596
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 93.0 bits (231), Expect = 1e-27 Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 11/133 (8%) Query: 1 MLKNLKSFLLRGNVIDLAVGVVIASAFGAIVTSLVNDIITPLILN-------PALKAAKV 53 ++K + F +RGNV+DLAVGV+I +AFG IV+SLV DII P + Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLR 62 Query: 54 ERIAQLSWHGVGYGNFLSAIINFIFVGTALFFIIKGIEKAQKLTGIKKEKTAEKKPTELE 113 + + + YG F+ + +F+ V A+F IK I K + K+E A PT+ E Sbjct: 63 DAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRK---KEEPAAAPAPTKEE 119 Query: 114 V-LQEIKALLEKK 125 V L EI+ LL+++ Sbjct: 120 VLLTEIRDLLKEQ 132
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.8 bits (67), Expect = 0.008 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 36 IAIVAAIYVVLTVTPPLNAISYGAYQFRISEMMN-FMAFYNPKY-----IIGVTIGCMIA 89 A+ ++ V L +TP L A E F ++N + ++G ++ Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILG 535 Query: 90 NFFSFGLLDVFVGGGSTLVFLSLGV 114 + + L+ + G ++FL L Sbjct: 536 STGRYLLIYALIVAGMVVLFLRLPS 560
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 28.8 bits (64), Expect = 0.033 Identities = 23/180 (12%), Positives = 51/180 (28%), Gaps = 14/180 (7%) Query: 1 MRKKLFLTSAAVLWAVTAMNSVHAATDVQKVIDETYVQPEYVLGSSLSEDQ--------- 51 M K+ L + + + + A +A V +E + P +V GS L Sbjct: 1 MNKRAMLGAIGLAFGLMAWPFGASAKGKSMVWNEQWKTPSFVSGSLLGRCSQELVYRYLD 60 Query: 52 KNQTLKKLGYNASTDTKELKTMTPDVYSKIMNVANDSS-LQLYSSAKIQKLGDKSPLEVK 110 + + +LG A + ++ +M + + + + D + Sbjct: 61 QEKNTFQLGGQARERLSLIGNKLDELGHTVMRFEQAIAASLCMGAVLVAHVNDGELSSLS 120 Query: 111 IETPENIT----KVTQDMYRNAAVTLGMEHAKITVAAPIPVTGESALAGIYYSLEANGAK 166 N+ K + A + + V P E + + + Sbjct: 121 GTLIPNLDKRTLKTEAAISIQQAEMIAKQDVADRVTKERPAAEEGKPTRLVIYPDEETPR 180
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 60.3 bits (146), Expect = 2e-12 Identities = 50/263 (19%), Positives = 102/263 (38%), Gaps = 36/263 (13%) Query: 55 PERVATIAWGNHDVALALGIVPVGFSK-ANYGVSADKGVLPWTEEKIKELNGKANLFDDL 113 P R+ + W ++ LALGIVP G + NY + + LP + + ++ + Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLP---DSVIDVGLRTE----- 86 Query: 114 DGLNFEAISNSKPDVIL--AGYSGITKEDYDTLSKIAPVAAYK----SKPWQTLWRDMIK 167 N E ++ KP ++ AGY + L++IAP + +P + + + Sbjct: 87 --PNLELLTEMKPSFMVWSAGY----GPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTE 140 Query: 168 IDSKALGMEKEGDELIKNTEARISKELEKHPEIKGKIKGKKVLFTMINAADTSKFWIYTS 227 + + L ++ + + E I P + +L T+I D ++ Sbjct: 141 M-ADLLNLQSAAETHLAQYEDFI---RSMKPRFVKRGARPLLLTTLI---DPRHMLVFGP 193 Query: 228 KDPRANYLTDLGLVFPESLKEFESEDSF--AKEISAEEANKINDADVI-ITYGDDKTLEA 284 L + G+ ++ E +F + +S + D DV+ + + K ++A Sbjct: 194 NSLFQEILDEYGIP-----NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDA 248 Query: 285 LQKDPLLGKINAIKNGAVAVIPD 307 L PL + ++ G +P Sbjct: 249 LMATPLWQAMPFVRAGRFQRVPA 271
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 34.9 bits (80), Expect = 9e-04 Identities = 19/127 (14%), Positives = 44/127 (34%), Gaps = 6/127 (4%) Query: 390 QEKINMKVDTSEIEKEIDNY-QKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRL 448 + V S +++E D + +LR + + L + + D L ++ Sbjct: 50 GGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQM 109 Query: 449 YRMYDKIDELESSLIDAKAKKQTIEAEKLTGDNIYKVLIYFDKLYKVMNDVERRQLISAL 508 + + L S+ D A++ I + + D+ + + + I A Sbjct: 110 QDFFTSLQTLVSNAEDPAARQALIGKSEGLVNQFKT----TDQYLRDQDK-QVNIAIGAS 164 Query: 509 ISEIQVY 515 + +I Y Sbjct: 165 VDQINNY 171
>PF01540#Adhesin lipoprotein Length = 475 Score = 27.8 bits (61), Expect = 0.013 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 8/61 (13%) Query: 52 INTDTYDQLVFELRRIGNNINQIARAINQSHLISQDQLQELSKGVGELIKEVDKEFQVEV 111 I + +L E ++I N + ++ + N++ ELSK V + I E++K+F+++V Sbjct: 351 IKAEDDKKLAEENQKIKNGVEELKKINNEA--------FELSKTVNKTIAELEKKFKIDV 402 Query: 112 K 112 Sbjct: 403 S 403
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 7e-04 Identities = 24/167 (14%), Positives = 61/167 (36%), Gaps = 26/167 (15%) Query: 38 DRMRQELALAEQKAMNEQQTKLAQKDQEIAQLQSQIQNFDTEKELAKKEVEQTSHQALLA 97 + +R + EQ + + Q QK+ + + +++ T + Sbjct: 183 EVLRLTSLIKEQFSTWQNQ--KYQKELNLDKKRAER---------------LTVLARINR 225 Query: 98 KDKEVQLLENQLATLR-LEHENQLQKT-LSDLEKERDQVKNQLLLQEKENELSLASVKQN 155 + ++ +++L L H+ + K + + E + + N+L + + L ++ Sbjct: 226 YENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNEL----RVYKSQLEQIESE 281 Query: 156 Y-EAQLKAASEQVEFYKNFKAQ--QSTKAIGESLEQYAESEFNKVRS 199 A+ + F + Q+T IG + A++E + S Sbjct: 282 ILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQAS 328
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 25.9 bits (57), Expect = 0.026 Identities = 9/26 (34%), Positives = 14/26 (53%) Query: 64 FEPGIPVIEAGPILFCIPAMSVPVFD 89 FEP + V A +LF + A+ P+ Sbjct: 376 FEPLLVVSMAAVVLFIVLAILQPILQ 401
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 28.5 bits (63), Expect = 0.037 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 24/141 (17%) Query: 95 GDNQTEVLEKGPEVLEQEGQDFLEHFKKLLESVEVVAISGSLPAGLPV------DYYASL 148 + E +EK + LE+E LE +KK E + + + + Y +L Sbjct: 61 EKKEAERVEKNLDTLEKEA---LELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNL 117 Query: 149 VE--LANQAGKPVVLDCSGAALQAVLESPHKPTVIKPNNEELSQLLGREVS-EDLDELKE 205 N+ KP+ + ESP K N+E+ E+S E +ELKE Sbjct: 118 RNAISKNKIDKPINV--------YYFESPEKFAF----NKEIRTENQNEISLEKFNELKE 165 Query: 206 VLQEPLFAGIEWIIVSLGANG 226 +Q+ LF + VSL G Sbjct: 166 TIQDKLFKQDGFKDVSLYEPG 186
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 30.2 bits (68), Expect = 0.004 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 16/80 (20%) Query: 19 QILDIINKDTHKEIIAKLDYDAP--SCPECGNQLKKYDFQKPSKIPYLETTGMPTRILLR 76 + N D + P CP C + + + IP L + + LR Sbjct: 48 EYRSYFNPDDEGVDEPPYNLMVPRSCCPHCNHPITALE-----NIPLL------SWLWLR 96 Query: 77 KRRFKCYHCSKMMVAETPLV 96 R C C + A PLV Sbjct: 97 GR---CRGCQAPISARYPLV 113
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 813 bits (2102), Expect = 0.0 Identities = 336/573 (58%), Positives = 446/573 (77%), Gaps = 4/573 (0%) Query: 1 MTEMLKGIAASDGVAVAKAYLLVQPDLSFETITVEDTNAEEARLDAALQASQDELSVIRE 60 M + GIAAS GVA+AKA++ ++P++ E ++ D + E +L AAL+ S++EL I++ Sbjct: 1 MHHKITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKD 60 Query: 61 KAVGTLGEEAAQVFDAHLMVLADPEMISQIKETIRAKKVNAEAGLKEVTDMFITIFEGME 120 + ++G + A++F AHL+VL DPE++ IK I +++NAE LKEV+DMF+++FE M Sbjct: 61 QTEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESM- 119 Query: 121 DNPYMQERAADIRDVTKRVLANLLGKKLPNPASINEEVIVIAHDLTPSDTAQLDKNFVKA 180 DN YM+ERAADIRDV+KRVL +L+G + + A+I EE ++IA DLTPSDTAQL+K FVK Sbjct: 120 DNEYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKG 179 Query: 181 FVTNIGGRTSHSAIMARTLEIAAVLGTNNITEIVKDGDILAVNGITGEVIINPTDEQAAE 240 F T+IGGRTSHSAIM+R+LEI AV+GT +TE ++ GD++ V+GI G VI+NPT+E+ Sbjct: 180 FATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKA 239 Query: 241 FKAAGEAYAKQKAEWALLKDAQTVTADGKHFELAANIGTPKDVEGVNNNGAEAVGLYRTE 300 ++ A+ KQK EWA L + T DG H ELAANIGTPKDV+GV NG E +GLYRTE Sbjct: 240 YEEKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTE 299 Query: 301 FLYMDSQDFPTEDEQYEAYKAVLEGMNGKPVVVRTMDIGGDKELPYFDMPHEMNPFLGFR 360 FLYMD PTE+EQ+EAYK V++ M+GKPVV+RT+DIGGDKEL Y +P E+NPFLGFR Sbjct: 300 FLYMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFR 359 Query: 361 ALRISISETGDAMFRTQIRALLRASVHGQLRIMFPMVALLKEFRAAKAVFDEEKANLLAE 420 A+R+ + + +FRTQ+RALLRAS +G L++MFPM+A L+E R AKA+ EEK LL+E Sbjct: 360 AIRLCLEKQD--IFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSE 417 Query: 421 GVAVADNIQVGIMIEIPAAAMLADQFAKEVDFFSIGTNDLIQYTMAADRMNEQVSYLYQP 480 GV V+D+I+VGIM+EIP+ A+ A+ FAKEVDFFSIGTNDLIQYTMAADRMNE+VSYLYQP Sbjct: 418 GVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQP 477 Query: 481 YNPSILRLINNVIKAAHAEGKWAGMCGEMAGDQQAVPLLVGMGLDEFSMSATSVLRTRSL 540 Y+P+ILRL++ VIKAAH+EGKW GMCGEMAGD+ A+PLL+G+GLDEFSMSATS+L RS Sbjct: 478 YHPAILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQ 537 Query: 541 MKKLDTAKMEEYANRALTECSTMEEVLELQKEY 573 + KL +++ +A +AL T EEV +L K+ Sbjct: 538 LLKLSKEELKPFAQKALM-LDTAEEVEQLVKKT 569
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 38.8 bits (90), Expect = 6e-05 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Query: 742 PQTEKPEEETPREEKPQSEKPESPKPTEEPEEESPEESPEESEEPQVETEKVKEKLREAE 801 P +P + +P E P+P EP +E+P + +P+ + + VK+ + + Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 111 Query: 802 DLLGKIQDPI---IKSNAKETLTGLKNN 826 + ++ ++ A LT Sbjct: 112 RDVKPVESRPASPFENTAPARLTSSTAT 139 Score = 35.0 bits (80), Expect = 0.001 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 3/74 (4%) Query: 740 EKPQTEKPEEET---PREEKPQSEKPESPKPTEEPEEESPEESPEESEEPQVETEKVKEK 796 E P +P T P + +P P+P EPE E E P V + + Sbjct: 37 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 96 Query: 797 LREAEDLLGKIQDP 810 + + + + P Sbjct: 97 KPKPKPVKKVQEQP 110 Score = 33.8 bits (77), Expect = 0.002 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%) Query: 733 QTEKPNEEKPQTEKPEEETPREEKPQSEKPESPKPTEEPEEESPEESPEESEEPQV 788 Q +P+ E P +E P + PKP +P+ P + +E + V Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK---PVKKVQEQPKRDV 114 Score = 31.1 bits (70), Expect = 0.016 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 10/69 (14%) Query: 735 EKPNEEKPQTEKPEEETPR-EEKPQSEKPESPKPTEEPEE---------ESPEESPEESE 784 +P E +P +E P EKP+ + PKP ++ +E ES SP E+ Sbjct: 69 VEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENT 128 Query: 785 EPQVETEKV 793 P T Sbjct: 129 APARLTSST 137
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 28.8 bits (64), Expect = 0.016 Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 2 AESALINLINFSKENEELTNLVSGHASKREKATISKDGLIQARSIENFIDNY 53 +++ ++ + S N LT +++G R A ISKD +R + + Y Sbjct: 80 LDASQMSNLPPSTLNLSLTGVMAGDDDSRSIAIISKDNEQFSRGVNEEVPGY 131
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 25.9 bits (56), Expect = 0.017 Identities = 6/47 (12%), Positives = 17/47 (36%) Query: 1 MTIIERLEEKVTRQESKVARETEKLAAYKEQLETAMFATFKRRQSIS 47 ++ ++ +T ++ + A + E A + RQ + Sbjct: 197 ISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAA 243
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.4 bits (68), Expect = 0.035 Identities = 14/131 (10%), Positives = 37/131 (28%), Gaps = 14/131 (10%) Query: 12 KAFRRSLKDEKKFLKKGKKEVKKQKKDSAVLDEKAWK-----KEIKKKLEEMREASKARV 66 +A + +L+ + L+K + + + K LE+ E + Sbjct: 182 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFS 241 Query: 67 KQANEDYNHI------LQNSPPSLLNRKELRDRRLPHARKRLKIAKKQYREAKVE---AK 117 + + L+ L E ++K + + + E + Sbjct: 242 TADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLE 301 Query: 118 EERKESRKERK 128 + + R+ Sbjct: 302 HQSQVLNANRQ 312
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 289 bits (740), Expect = e-103 Identities = 87/180 (48%), Positives = 124/180 (68%), Gaps = 7/180 (3%) Query: 1 MITEMKAGHLKDIDKPSEPFEVIGKIIPRYENENWTFTELLYEAPYLKSYQDEEDEEDEE 60 MI +M ++KD +KP+EPF V G++IP +EN WT+TE + PY K Y+D++ + Sbjct: 1 MIMKMTHLNMKDFNKPNEPFVVFGRMIPAFENGVWTYTEERFSKPYFKQYEDDDMD---- 56 Query: 61 ADCLEYIDNTDKIIYLYYQDDKCVGKVKLRKNWNRYAYIEDIAVCKDFRGQGIGSALINI 120 + Y++ K +LYY ++ C+G++K+R NWN YA IEDIAV KD+R +G+G+AL++ Sbjct: 57 ---VSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHK 113 Query: 121 SIEWAKHKNLHGLMLETQDNNLIACKFYHNCGFKIGSVDTMLYANFENNFEKAVFWYLRF 180 +IEWAK + GLMLETQD N+ AC FY F IG+VDTMLY+NF E A+FWY +F Sbjct: 114 AIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSNFPTANEIAIFWYYKF 173
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 37.4 bits (87), Expect = 1e-04 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 9/65 (13%) Query: 387 RTAALLQKMK---------SGDASQFPIETALKVLTIEGAKALGMENQIGSLEVGKQADF 437 RT KMK +GD F ++ + TI A A G+ ++IGSLEVGK+AD Sbjct: 375 RTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSHEIGSLEVGKRADL 434 Query: 438 LVIQP 442 ++ P Sbjct: 435 VLWNP 439
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 28.2 bits (62), Expect = 0.038 Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 4/63 (6%) Query: 92 EDLSDLPDMEELAQMSPDEFIKTLEKSIADKTKDDIEAIQSLEQVEAKEEEQEQAEQEAE 151 ++LS++ + L M FI+ + K+ + ++D+ +L++ E E++ AE + E Sbjct: 248 DNLSNVARLTMLMAM----FIEIVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEFQEE 303 Query: 152 SKK 154 ++K Sbjct: 304 TRK 306
>INTIMIN#Intimin signature. Length = 939 Score = 30.0 bits (67), Expect = 0.012 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%) Query: 69 ELWPRYADERYFLSKSHKDFVDRNLFITIRDKKTTCIKPYQQDLDLPH 116 ++ P+Y +E LS S D V RN I + KK + L++PH Sbjct: 418 QIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILS-----LNIPH 460
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 44.7 bits (105), Expect = 3e-07 Identities = 77/331 (23%), Positives = 137/331 (41%), Gaps = 65/331 (19%) Query: 25 LDSKINSRDSQKLVIYNWGDYIDPELLTQFTEETGIQVQYETFDSNEAMYTKIKQGGTTY 84 L S ++S S V+ N+ YI P LL + E+ + + T+ SNE + TY Sbjct: 16 LSSILSSCGSTTFVLANFESYISPLLLERVQEKH--PLTFLTYPSNEKLINGF--ANNTY 71 Query: 85 DIAIPSEYMINKMKDEDLLVPLDYSK-----------------------LEGLENIGPEF 121 +A+ S Y ++++ + DLL P+D+S+ ++ ++ I + Sbjct: 72 SVAVASTYAVSELIERDLLSPIDWSQFNLKKSSSSSDKVNNASDAKDLFIDSIKEISQQT 131 Query: 122 LNQSFDPGNKFSIPYFWGTLGIVY-NETMVEAAPEH--WDDLWKPEYK-------NSIML 171 + + +++PYF L VY E + E E+ W D+ K K N ++ Sbjct: 132 KDSKNNELLHWAVPYFLQNLVFVYRGEKISELEQENVSWTDVIKAIVKHKDRFNDNRLVF 191 Query: 172 FDGAREVLGLG---------------LNSLGYSLNSKDT-QQLEETVDKLYKLTPNIKA- 214 D AR + L + +GY N ++ Q+L T L + N + Sbjct: 192 IDDARTIFSLANIVNTNNNSADVNPKEDGIGYFTNVYESFQRLGLTKSNLDSIFVNSDSN 251 Query: 215 IVADEM-----KGYMIQNNAAIGVTFSGEASQMLEKNE----NLRYVVPTEASNLWFDNM 265 IV +E+ +G ++ N A+ G+ L + + N ++V + S + D + Sbjct: 252 IVINELASGRRQGGIVYNGDAVYAALGGDLRDELSEEQIPDGNNFHIVQPKISPVALDLL 311 Query: 266 VIPKTVKN-QDAAYAFINFMLKPENALKNAE 295 VI K N Q A+ I F L + A + E Sbjct: 312 VINKQQSNFQKEAHEII-FDLALDGADQTKE 341
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 30.2 bits (68), Expect = 0.008 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Query: 4 KKWIFVLCNFLASFFLVACQSGSNGSQSAVDAIKQKGKLVVATSP 48 KK +L FL++ LVAC SG + S QK K+V S Sbjct: 2 KKLGTLLVLFLSAIILVACASGKKDTTS-----GQKLKVVATNSI 41
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.6 bits (64), Expect = 0.027 Identities = 9/32 (28%), Positives = 18/32 (56%) Query: 140 ETIRAAILSVNPGEIEAARSLGMTRAQVYRRV 171 I AA+ + +I+AA LG+ R + +++ Sbjct: 439 PLILAALTATRGNQIKAADLLGLNRNTLRKKI 470
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.9 bits (67), Expect = 0.003 Identities = 24/124 (19%), Positives = 35/124 (28%), Gaps = 26/124 (20%) Query: 50 GQAYVALEEGELLAYAAVTKSPEEAYEAIYEGNWQAGESEYLVFHRIAVAADVQGKGVAQ 109 A++ E + + NW + Y + IAVA D + KGV Sbjct: 65 KAAFLYYLENNCIGRIKIRS------------NW----NGYALIEDIAVAKDYRKKGVGT 108 Query: 110 TFLEGLIE---GFDYLDFRSDTHAENKVMQHIFEKLGFKQVG-------KVPVDGERLAY 159 L IE + +T N H + K F P E + Sbjct: 109 ALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSNFPTANEIAIF 168 Query: 160 QKLK 163 K Sbjct: 169 WYYK 172
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 34.0 bits (78), Expect = 0.001 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 20/94 (21%) Query: 164 RIAVVGG-GYIGVELAEAFERLGKEVVLVDIVDTVLNGYYDKDFTQMMAKNLEDHNIRLA 222 + V G G+IG +++ G +VV +D LN YYD +L+ + L Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGID----NLNDYYD--------VSLKQARLELL 49 Query: 223 LGQTVKAIEGD----GKVERLITDKESFDVDMVI 252 + + D + L + V Sbjct: 50 AQPGFQFHKIDLADREGMTDLFASGH---FERVF 80
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 80.7 bits (199), Expect = 2e-18 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 10/153 (6%) Query: 19 VNIGTIGHVDHGKTTLTAAI---TTVLARRLPSSVNQPKDYASIDAAPEERERGITINTA 75 +NIG + HVD GKTTLT ++ + + SV+ K D ER+RGITI T Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITE--LGSVD--KGTTRTDNTLLERQRGITIQTG 59 Query: 76 HVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMPQTREHILLSRQV 135 ++ E ID PGH D++ + + +DGAIL++++ DG QTR R++ Sbjct: 60 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 119 Query: 136 GVKHLIVFMNKVDLVDDEELLELVEMEIRDLLS 168 G+ I F+NK+D + L V +I++ LS Sbjct: 120 GIP-TIFFINKIDQNGID--LSTVYQDIKEKLS 149
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.8 bits (85), Expect = 1e-05 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 76 IAETFGNWLEIEYLFVKEELRGQGIGSKLLQQAESEAKNRNCCFAFVNTYQFQAP--DFY 133 I + + IE + V ++ R +G+G+ LL +A AK + C + T FY Sbjct: 82 IRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFY 141 Query: 134 QKHGYKEVFSLQDYLY 149 KH + + ++ LY Sbjct: 142 AKHHFI-IGAVDTMLY 156
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.6 bits (66), Expect = 0.029 Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 15/160 (9%) Query: 50 LMADSLSTVEEIMRKAPTVPTHPSQGVPASPADEIQRETPGVPSHP-------SQDVPSS 102 ++A L T + + P P P +PAD + P P + +P Sbjct: 28 VVAGLLYTSVHQVIELPA-PAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEP 86 Query: 103 PAEE------SGSRPGPGPVRPKKLEREYNETPTRVAVSYTTGEKKAEQAGPETPTPATE 156 P E +P P P KK+E+ + + + E A + A Sbjct: 87 PKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAAT 146 Query: 157 TVDIIRDTSRRSRREGAKPVKPKKEKKSHVKAFV-ISFLV 195 + + S +P P + + ++ V + F V Sbjct: 147 SKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDV 186
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.8 bits (72), Expect = 7e-04 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 85 GYISVTCLSIAKEAQGLGLGQKLLTALKEFALEDERDGINLTCHDYLIA---YYEKHGFV 141 GY + +++AK+ + G+G LL E+A E+ G+ L D I+ +Y KH F+ Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 142 NEGQSQSTFAG 152 ++ Sbjct: 148 IGAVDTMLYSN 158
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 29.1 bits (65), Expect = 0.028 Identities = 8/21 (38%), Positives = 10/21 (47%) Query: 31 DILSLTLGEPDFTTPKNIQDA 51 L L L PDF+T + D Sbjct: 191 VNLVLQLRNPDFSTAVRVADV 211
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 28.8 bits (64), Expect = 0.027 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 141 GTEVAGESHIVDHRGIIDNVYVTNALNDDTPLASRRVVQTILESDMIVLGPGSLFTSILP 200 + A E+H+ + I ++ PL + I M+V GP SLF IL Sbjct: 146 NLQSAAETHLAQYEDFIRSMKPRFVKRGARPLL---LTTLIDPRHMLVFGPNSLFQEILD 202 Query: 201 NIVIK 205 I Sbjct: 203 EYGIP 207
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 181 bits (462), Expect = 5e-57 Identities = 88/350 (25%), Positives = 149/350 (42%), Gaps = 48/350 (13%) Query: 4 KILVTGGAGFIGTHTVIELIQAGHQVVVVDNLVNSNRKSLEV--VERITGVEIPFYEADI 61 K LVTG AGFIG H L++AGHQVV +DNL + SL+ +E + F++ D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 62 RDTATLRDIFKQEEPTGVIHFAGLKAVGESTRIPLAYYDNNIAGTVSLLKAMEENNCKNI 121 D + D+F V AV S P AY D+N+ G +++L+ N +++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 122 IFSSSATVYGDPHTVPILE----DFPLSVTNPYGRTKLMLEEI---LTDIYKADSEWNVV 174 +++SS++VYG +P D P+S Y TK E + + +Y Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVS---LYAATKKANELMAHTYSHLYGLP----AT 174 Query: 175 LLRYFNPIGAHESGDLGENPNGIPNNLLPYVTQVAVGKLEQVQVFGDDYDTEDGTGVRDY 234 LR+F G P G P+ L T+ A+ + + + V+ G RD+ Sbjct: 175 GLRFFTVYG----------PWGRPDMALFKFTK-AMLEGKSIDVYN------YGKMKRDF 217 Query: 235 IHVVDLAKGHVAALKKIQKGSG---------------LNVYNLGTGKGYSVLEIIQNMEK 279 ++ D+A+ + I VYN+G +++ IQ +E Sbjct: 218 TYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALED 277 Query: 280 AVGRPIPYRIVERRPGDIAACYSDPAKAKAELGWEAELDITQMCEDAWRW 329 A+G ++ +PGD+ +D +G+ E + ++ W Sbjct: 278 ALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.014 Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 24/277 (8%) Query: 90 VTLLLTSTDFSLFSVFFICSMNLISDTIGFLAGYMLTPIYIRLIND-----DMTEAMGFR 144 V+L + D+++ + + I + + G + I D + GF Sbjct: 78 VSLAGAAVDYAIMATAPFLWVLYIGRIVAGITG-ATGAVAGAYIADITDGDERARHFGFM 136 Query: 145 QSTSSIVRLIGNLSGGVFLGLFSISTLAFVNVLTFLFAFLGSLLIRNRLKKEEEKIEVPP 204 + + G + GG +G FS F FL + K E + Sbjct: 137 SACFGFGMVAGPVLGG-LMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERR----- 190 Query: 205 YVGMSSFFQHLKESMKLLMTMEDVMVLLWILSISQAVLMMVEPVSAILLIHHPFMGLSTG 264 + + S + M V L+ + I Q V + + I Sbjct: 191 --PLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR--FHWDAT 246 Query: 265 QSLAILIMISLLHVILGGLLSGFLSKKISIRLNIYWSLL--MESLIVIDFLRGS--FLLI 320 L +LH + +++G ++ ++ R + ++ I++ F I Sbjct: 247 TIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPI 306 Query: 321 LLGSAGDAFSAGVLSPRLQAMIFGIIPEELMGSVQSS 357 ++ A G+ P LQAM+ + EE G +Q S Sbjct: 307 MVLLAS----GGIGMPALQAMLSRQVDEERQGQLQGS 339
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 6e-19 Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 3/142 (2%) Query: 33 KILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNGYH 92 IL+ +DD IR + + LS G++V + + + + LV+ D+ +P N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 93 WCQEIRKI-SKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLL--RRS 149 I+K +P++ +S+++ M + A GA D++ KPFD L+ + L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 150 YEFGRDESLLEYAGVILNTKSM 171 ++ + ++ + +M Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAM 146
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 29.7 bits (66), Expect = 0.026 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 6/104 (5%) Query: 71 FEKANPDIKVKLETIDFKSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKNGKLAELNDLF 130 FEK + IKV +E D EK G PD++F A R Y ++G LAE+ Sbjct: 53 FEK-DTGIKVTVEHPD--KLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT--- 106 Query: 131 TDEFVKDVNNENIVQASKAGDKAYMYPISSAPFYMAMNKKMLED 174 D+ +D A + K YPI+ + NK +L + Sbjct: 107 PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN 150
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 32.5 bits (74), Expect = 0.003 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 14/146 (9%) Query: 72 LSLLLCVGLCIGLAKRDKGTAAL-AGVTGYLVMTATIKALVKLFMAEGSAIDTGVIGALV 130 L+ LL + + L D L +T L+ + L+ F++ G A+ + G LV Sbjct: 135 LAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYLV 194 Query: 131 VGIV--AVYLHNR-----YNNIQLPSALGFFGGSRFVPIVTSFSSILIGFVFFVIWPPFQ 183 + + A L Y + +L +ALG + G + +PIV SS L+G + + Sbjct: 195 LWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS-LVGAFMGIGLILLR 253 Query: 184 QLLVST----GGYISQAGPIGTFLYG 205 S G Y++ AG I L+G Sbjct: 254 NHHQSKPIPFGPYLAIAGWIA-LLWG 278
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 32.8 bits (74), Expect = 0.003 Identities = 60/268 (22%), Positives = 105/268 (39%), Gaps = 21/268 (7%) Query: 72 TKIKIETFSWNDFYTKWTTGLANGNVPDISTALPNQVMEMVNSDALVPLNDSIKRIGQDK 131 T IK+ + K+ A G+ PDI ++ S L + + QDK Sbjct: 57 TGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPD--KAFQDK 114 Query: 132 FNETALNEAKIGDDYYSVPLYSHAQVMWVRTDLLKEHNIEVPKTWDQLYEASKKLKEAG- 190 + + + P+ A + DLL PKTW+++ K+LK G Sbjct: 115 LYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNP----PKTWEEIPALDKELKAKGK 170 Query: 191 ---IYGLSVPFGTNDLMATRFLNFYVRSGGGSLLTKDLKADLTSQLAQDGIKYWVKLYKE 247 ++ L P+ T L+A + + G KD+ D + A+ G+ + V L K Sbjct: 171 SALMFNLQEPYFTWPLIAADG-GYAFKYENGKYDIKDVGVD--NAGAKAGLTFLVDLIKN 227 Query: 248 ISPQDSLNFNVLQQATLFYQGKTAFDFNSGFHIGGINANSPQLIDSIDAYPIPKIKESDK 307 ++++ + A F +G+TA N + I+ + + P K + S Sbjct: 228 KHMNADTDYSIAEAA--FNKGETAMTINGPWAWSNIDTSKVNY--GVTVLPTFKGQPSKP 283 Query: 308 DQGIETSNIPMVVWKNSKHPEVAKAFLE 335 G+ ++ I S + E+AK FLE Sbjct: 284 FVGVLSAGINAA----SPNKELAKEFLE 307
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.1 bits (88), Expect = 2e-04 Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 15/133 (11%) Query: 21 QERKCRYSIRKLSVGAVSMIVGAVVFGTSPVLAQEGASEQPLANETQLSGESSTLTDTEK 80 YS+RKL G S+ V V G L T +T + T+ Sbjct: 4 NNTNRHYSLRKLKTGTASVAVALTVLGAG------------LVVNTNEVSAVATRSQTDT 51 Query: 81 SQPSSETELSGNKQEQERKDKQEEKIPRDYYARD--LENVETVIEKEDVETNASNGQRVD 138 + E + E + + + A + + + + ++ + Sbjct: 52 LEKVQE-RADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSE 110 Query: 139 LSSELDKLKKLEN 151 +S++ +L+ + Sbjct: 111 KASKIQELEARKA 123
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 351 bits (902), Expect = e-122 Identities = 129/365 (35%), Positives = 186/365 (50%), Gaps = 17/365 (4%) Query: 14 RPTKALIHLGAIRQNIQQMGAHIPQGTLKWAVVKANAYGHGAVAVAKAIQDDVDGFCVSN 73 RP +A + L A++QN+ + + W+VVKANAYGHG + AI DGF + N Sbjct: 3 RPIQASLDLQALKQNLSIVRQAATHARV-WSVVKANAYGHGIERIWSAI-GATDGFALLN 60 Query: 74 IDEAIELRQAGLSKPILIL-GVSEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDLTGLT 132 ++EAI LR+ G PIL+L G + + + ++ T V ++AL + + L Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAP-LD 119 Query: 133 VHLKIDSGMGRIGFREVSEVEQAQDLLQKHGVCVEGIFTHFATADEESDDYFNAQLERFK 192 ++LK++SGM R+GF+ + Q L V + +HFA A+ D + + R + Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHP--DGISGAMARIE 177 Query: 193 TILASMKEVPELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSGAVLDL-PYDLIPALT 251 + + SNSA TLWH E F+ VR G +YG +PSG D+ L P +T Sbjct: 178 QAA---EGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMT 234 Query: 252 LESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQN-FSVLVDGQACP 310 L S ++ V+T+ AG +GYG Y A EQ I V GYADG+ R VLVDG Sbjct: 235 LSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTM 294 Query: 311 IVGRVSMDQITIRLPKL--YPLGTKVTLIGSNGDKEITATQVATYRVTINYEVVCLLSDR 368 VG VSMD + + L +GT V L G KEI VA T+ YE++C L+ R Sbjct: 295 TVGTVSMDMLAVDLTPCPQAGIGTPVELWG----KEIKIDDVAAAAGTVGYELMCALALR 350 Query: 369 IPREY 373 +P Sbjct: 351 VPVVT 355
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 26.9 bits (59), Expect = 0.017 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 5/73 (6%) Query: 9 GIDIEELASIESAVTRHEGFAKRVLTAQEMERFTSLKGRRQIEYLAGRWSAKEAFSKAMG 68 GIDIE++ S + A ++ + E + + L +SAKE+ KA Sbjct: 105 GIDIEKIMSQHT----ATELAPSIIDSDERQILQA-SLLPFPLALTLAFSAKESVYKAFS 159 Query: 69 TGISKLGFQDLEV 81 ++ GF +V Sbjct: 160 DRVTLPGFNSAKV 172
>SECA#SecA protein signature. Length = 901 Score = 1055 bits (2729), Expect = 0.0 Identities = 391/904 (43%), Positives = 561/904 (62%), Gaps = 71/904 (7%) Query: 1 MANILKTIIENDKG-EIRRLEKMADKVFKYEDQMAALTDDQLKAKTVEFKERYQNGESLD 59 + +L + + +RR+ K+ + + E +M L+D++LK KT EF+ R + GE L+ Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 60 SLLYEAFAVVREGAKRVLGLFPYKVQVMGGIVLHHGDVPEMRTGEGKTLTATMPVYLNAL 119 +L+ EAFAVVRE +KRV G+ + VQ++GG+VL+ + EMRTGEGKTLTAT+P YLNAL Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 120 SGKGVHVVTVNEYLSERDATEMGELYSWLGLSVGINLATKSPMEKKEAYECDITYSTNSE 179 +GKGVHVVTVN+YL++RDA L+ +LGL+VGINL K+EAY DITY TN+E Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 180 IGFDYLRDNMVVRAENMVQRPLNYALVDEVDSILIDEARTPLIVSGANAVETSQLYHMAD 239 GFDYLRDNM E VQR L+YALVDEVDSILIDEARTPLI+SG + ++Y + Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSS-EMYKRVN 240 Query: 240 HYVKSLNKD------------DYIIDVQSKTIGLSDSGIDRAESYF-------KLENLYD 280 + L + + +D +S+ + L++ G+ E + E+LY Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300 Query: 281 IENVALTHFIDNALRANYIMLLDIDYVVSEEQEILIVDQFTGRTMEGRRYSDGLHQAIEA 340 N+ L H + ALRA+ + D+DY+V ++ E++IVD+ TGRTM+GRR+SDGLHQA+EA Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIV-KDGEVIIVDEHTGRTMQGRRWSDGLHQAVEA 359 Query: 341 KEGVPIQDETKTSASITYQNLFRMYKKLSGMTGTGKTEEEEFREIYNIRVIPIPTNRPVQ 400 KEGV IQ+E +T ASIT+QN FR+Y+KL+GMTGT TE EF IY + + +PTNRP+ Sbjct: 360 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMI 419 Query: 401 RIDHSDLLYASIESKFKAVVEDVKARYQKGQPVLVGTVAVETSDYISKKLVAAGVPHEVL 460 R D DL+Y + K +A++ED+K R KGQPVLVGT+++E S+ +S +L AG+ H VL Sbjct: 420 RKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVL 479 Query: 461 NAKNHYREAQIIMNAGQRGAVTIATNMAGRGTDIKLG----------------------- 497 NAK H EA I+ AG AVTIATNMAGRGTDI LG Sbjct: 480 NAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 539 Query: 498 ------EGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDDLMKRFG 551 + V E GGL +IGTERHESRRIDNQLRGRSGRQGD G S+FYLS+ED LM+ F Sbjct: 540 DWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA 599 Query: 552 SERLKGIFERLNMSE-EAIESRMLTRQVEAAQKRVEGNNYDTRKQVLQYDDVMREQREII 610 S+R+ G+ +L M EAIE +T+ + AQ++VE N+D RKQ+L+YDDV +QR I Sbjct: 600 SDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAI 659 Query: 611 YAQRYDVITADRDLAPEIQSMIKRTIERVVDGHARAKQDEK---LEAILNFAKYNLLPED 667 Y+QR +++ D++ I S+ + + +D + + E+ + + K + + Sbjct: 660 YSQRNELLDVS-DVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDL 718 Query: 668 SIT--MEDLSGLSDKAIKEELFQRALKVYDSQVSKLRDEEAVKEFQKVLILRVVDNKWTD 725 I ++ L ++ ++E + ++++VY + + E ++ F+K ++L+ +D+ W + Sbjct: 719 PIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVG-AEMMRHFEKGVMLQTLDSLWKE 777 Query: 726 HIDALDQLRNAVGLRGYAQNNPVVEYQAEGFRMFNDMIGSIEFDVTRLMMKAQIH----- 780 H+ A+D LR + LRGYAQ +P EY+ E F MF M+ S++++V + K Q+ Sbjct: 778 HLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEV 837 Query: 781 ----EQERPQAERHISTTATRNIAAHQASMP---EDLDLSQIGRNELCPCGSGKKFKNCH 833 +Q R +AER + A+ ++GRN+ CPCGSGKK+K CH Sbjct: 838 EELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCH 897 Query: 834 GKRQ 837 G+ Q Sbjct: 898 GRLQ 901
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.004 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 33 LKGDNGSGKTVLLKVLAG-YIKLDKGKVLQDGKVYGIKNHYIQDAGILIEKVEFLSHLSL 91 L+G G GK+ L+ L G D G K+ Y Q AGI+ ++ ++ Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSD--THFDIGTG---KDSYEQIAGIVAYELSEMTAFRR 655 Query: 92 RENLELLRYFSSKVTEKRIAY 112 + + +FSS+ R AY Sbjct: 656 ADAEAVKAFFSSRKDRYRGAY 676
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.7 bits (98), Expect = 5e-06 Identities = 21/192 (10%), Positives = 56/192 (29%), Gaps = 18/192 (9%) Query: 41 NAEQEATNLRGQAEREADLLVNEAKRESKSLKKEALLEAKEEARKYREEVDAEFKSERQE 100 + R Q + L + + + +E R + +F + + + Sbjct: 143 LLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLR-LTSLIKEQFSTWQNQ 201 Query: 101 LKQIESRLTERATSLDRKDDNLTSKEQTLEQKEQSISDRAK----------NLDAREEQL 150 Q E L ++ + E ++ + D + + +E + Sbjct: 202 KYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKY 261 Query: 151 EEVERQKEAELERIG----ALSQAEARDIILAQTEENLTREIASRIREAEQEVKERSDKM 206 E + ++ + A+ + EI ++R+ + + ++ Sbjct: 262 VEAVNELRVYKSQLEQIESEILSAKEE---YQLVTQLFKNEILDKLRQTTDNIGLLTLEL 318 Query: 207 AKDILVQAMQRI 218 AK+ Q I Sbjct: 319 AKNEERQQASVI 330
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 28.1 bits (62), Expect = 0.019 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 27 LTHCLGVERAAMELAQRFGVDVEKASLAGLLHDYAKKLSDQE 68 ++HC A+ QR G+D+EK + A + D + Sbjct: 88 ISHCATT-ALAVISRQRIGIDIEKIMSQHTATELAPSIIDSD 128
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 30.6 bits (69), Expect = 0.006 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 13/47 (27%) Query: 162 KEKALKNYQK--GTFYNKTLLPQFHIHSREEAYQLIQEKGYILKADA 206 + A +N K G FY++ E A +L +EKG+I+K D+ Sbjct: 122 NDPAFQNPTKPVGPFYDE-----------ETAKRLAREKGWIVKEDS 157
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 49.6 bits (118), Expect = 4e-10 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Query: 59 QITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLLLEEAIEWAQAS 118 + L +L G + I ++ I D I + K Y G+G+ LL +AIEWA+ + Sbjct: 65 KAAFLYYLENNCIGRIKIRSNWNGYA-LIED--IAVAKDYRKKGVGTALLHKAIEWAKEN 121 Query: 119 GILRRLQLTVQTRNQAAVHLYQKHGFVIEG 148 L L Q N +A H Y KH F+I Sbjct: 122 HFCG-LMLETQDINISACHFYAKHHFIIGA 150
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 31.3 bits (71), Expect = 0.014 Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 22/156 (14%) Query: 122 LLREELSQLGLTNMHLTIPSKLSTLMAIFSNGFQLISLLIFILTFVAL--TLISQISQ-- 177 E S+L L + L + N L F L VA + S + Q Sbjct: 48 YYFEHFSKLMLIPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYG 107 Query: 178 ---------LRSSGIRLISGEKR------WSIFLRPVGEDLKAIAVGFSLAGVLAILMQK 222 I I G KR FL+ + LK + + + ++ + Sbjct: 108 FLISGEAIKPDIKKINPIEGAKRIFSIKSLVEFLKSI---LKVVLLSILIWIIIKGNLVT 164 Query: 223 ILSLPTQSLMTIGAGLLSYNLILLSISLFFAQLFAV 258 +L LPT + I L L+ I + ++ Sbjct: 165 LLQLPTCGIECITPLLGQILRQLMVICTVGFVVISI 200
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 156 bits (395), Expect = 2e-51 Identities = 59/155 (38%), Positives = 95/155 (61%), Gaps = 1/155 (0%) Query: 5 IGLFTGSFDPMTNGHLDIIERASRLFDKLYVGIFFNPHKQGFLPIENRKRGLEKAVKHLG 64 ++ GSFDP+T GHLDIIER RLFD++YV + NP+KQ ++ R + KA+ HL Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 65 NVKVVSSHDELVVDVAKRLGATCLVRGLRNASDLQYEASFDYYNHQLSPDIETIYLHSRP 124 N +V S L V+ A++ A ++RGLR SD + E N L+ D+ET++L + Sbjct: 62 NAQVDSFEG-LTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTST 120 Query: 125 EHLYISSSGVRELLKFGQDIACYVPESILEEIRNE 159 E+ ++SSS V+E+ +FG ++ +VP + + ++ Sbjct: 121 EYSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQ 155
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 117 bits (294), Expect = 1e-31 Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 21/225 (9%) Query: 35 GFIWNTIGAPMAEAIKYFATDKGLGFGVAIIIVTIIVRLIILPLGIYQSWKATLHSEKMN 94 G++W I P+ + +K+ + G +G +III+T IVR I+ PL + + KM Sbjct: 331 GWLW-FISQPLFKLLKWIHSFVG-NWGFSIIIITFIVRGIMYPLT-KAQYTSMA---KMR 384 Query: 95 ALKHVLEPHQTRLKEATTQEEKLEAQQALFAAQKEHGISMFGGVGCFPILLQMPFFSAIY 154 L +P ++E +++ Q + A K ++ GG CFP+L+QMP F A+Y Sbjct: 385 ML----QPKIQAMRERLGDDKQ-RISQEMMALYKAEKVNPLGG--CFPLLIQMPIFLALY 437 Query: 155 FAAQHTEGVAQASYLG----IPLGSPSMILVACAGVLYYLQSLLSLHGVEDEMQREQIKK 210 + + + QA + + P IL GV + +S V D MQ +K Sbjct: 438 YMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQ----QK 493 Query: 211 MIYMSPLMIVVFSLFSPASVTLYWVVGGFMMILQQFIVNYIVRPK 255 ++ P++ VF L+ P+ + LY++V + I+QQ ++ + + Sbjct: 494 IMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKR 538
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.0 bits (62), Expect = 0.036 Identities = 8/31 (25%), Positives = 14/31 (45%) Query: 32 LAADYANFEREIKRLEATGAEYAHIDIMDSH 62 A A+ +I RL GA + +++D Sbjct: 171 YAKQIASLNDQISRLTGVGAGASPNNLLDQR 201
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 34.7 bits (79), Expect = 4e-04 Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 7/153 (4%) Query: 145 AQSQASKQLATEKESAKNAIEKAAKDKQDEIKGAPLSDKEKAELLARVEAEKQAALKEI- 203 A +A KQ+ E A + + K ++ + L++KEKAEL A++EAE +A +++ Sbjct: 390 ASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLA 449 Query: 204 ENAKTMEDVKEAETIGVQAIVMVTVPKRPVTPNAAPKTTSTPQATAGTMQDVTYQSPAGK 263 + A+ + ++ + Q P A P PQA Q+ + Sbjct: 450 KQAEELAKLRAGKASDSQT------PDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKR 503 Query: 264 QLPNTGSASSAALASLGLVVATSGFALLGRKTR 296 QLP+TG ++ + L V + K + Sbjct: 504 QLPSTGETANPFFTAAALTVMATAGVAAVVKRK 536
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 177 bits (451), Expect = 2e-60 Identities = 46/149 (30%), Positives = 81/149 (54%), Gaps = 4/149 (2%) Query: 1 MRKRDRHQLIKKMITEEKLSTQKEIQDRLEAHNVCVTQTTLSRDLREIGLTKVKKNDMVY 60 M K RH I+++IT ++ TQ E+ D L+ VTQ T+SRD++E+ L KV N+ Y Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSY 60 Query: 61 YVLVNETEKIDLVEFLSHHLEG----VARAEFTLVLHTKLGEASVLANIVDVNKDKWILG 116 + ++ + + L L + A +VL T G A + ++D + I+G Sbjct: 61 KYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIMG 120 Query: 117 TVAGANTLLVICRDQHVAKLMEDRLLDLM 145 T+ G +T+L+ICR K+++ ++L+L+ Sbjct: 121 TICGDDTILIICRTHDDTKVVQKKILELL 149
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.4 bits (240), Expect = 4e-25 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 1/127 (0%) Query: 1 MTKQ-VLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQL 59 MT +L+ DD+ I +L+ LS+ G+ ++ +N D ++ D+++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 DGMEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLR 119 + ++ R++ P++++SA++ + A E GA DYL KPF EL+ + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 RTKGEQE 126 K Sbjct: 121 EPKRRPS 127
>PF06580#Sensor histidine kinase Length = 349 Score = 43.3 bits (102), Expect = 1e-06 Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 33/186 (17%) Query: 261 IYKESLRLEHIVEHLLTLSKA--QQMPIQWTTLSL-AEFVQDLTQSLQPQLKKKDLQLKV 317 I ++ + ++ L L + + + +L+ V Q Q + + LQ + Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDR-LQFEN 244 Query: 318 QVPDDVTLVSDSQLLSQILLNLLSNAIRY----TEQGGKIEVKTQKVNEGIKISVSDTGI 373 Q+ + D Q+ ++ L+ N I++ QGGKI +K K N + + V +TG Sbjct: 245 QINPAI---MDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGS 301 Query: 374 GISQLEQDRIFERFYRVNKGRSRQTGGTGLGLAIVKELSQLLGG---QVTVTSQLGRGSC 430 + ++ TG GL V+E Q+L G Q+ ++ + G+ + Sbjct: 302 LALKNTKE------------------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343 Query: 431 FTIFLP 436 + +P Sbjct: 344 -MVLIP 348
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 29.1 bits (65), Expect = 0.009 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 11/70 (15%) Query: 231 NEIQLTDAIDTLNKTQRVFAREFKGAR-YDVGDKFGFMKTSIDYALKHPQVKDDLKNYLI 289 NE ++ ++ L K K ++G+++ ++D Sbjct: 55 NERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLK----------ETIQDLCAKDFH 104 Query: 290 QLGKELTEKE 299 Q KE TEK Sbjct: 105 QKLKEFTEKT 114
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 31.3 bits (71), Expect = 0.005 Identities = 31/159 (19%), Positives = 51/159 (32%), Gaps = 9/159 (5%) Query: 136 LPFLAYAILGIFSVQYFFYLCVEYSNATTATILQFISPVFILFYNRLVYQKRASKSAVFY 195 PF A A L + +L E + + F A+ AVF+ Sbjct: 161 APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFF 220 Query: 196 V--LVAMLGVCLMATKG-DLSQLSMTPLALITGLLSAMGVMFNVILPQPFAKRYGFVPTV 252 + LV + L G D T + + + + ++ P A R G + Sbjct: 221 IMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRAL 280 Query: 253 GWGMILAGLFSNVLSPVYQLSFTLDIWSILICLIIAFFG 291 GMI G +L L+F W +++ G Sbjct: 281 MLGMIADGT-GYIL-----LAFATRGWMAFPIMVLLASG 313
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 28.6 bits (64), Expect = 0.045 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 16/94 (17%) Query: 433 DLQVKASSDYDMVFSTIKVETEKPNYLVSVMMTEEQAIQLVELVLKDFPNLEYGDFEIEQ 492 D+ + +D V+ + K M + ++ ++ + + PN + FE Sbjct: 18 DIIERGCRLFDQVYVAVLRNPNK-----QPMFSVQERLEQIAKAIAHLPNAQVDSFE-GL 71 Query: 493 ILNIVKRYGI--ITQ--------ELELRLALKNY 516 +N ++ I + ELEL++A N Sbjct: 72 TVNYARQRQAGAILRGLRVLSDFELELQMANTNK 105
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 552 bits (1425), Expect = 0.0 Identities = 190/408 (46%), Positives = 270/408 (66%), Gaps = 8/408 (1%) Query: 5 PIQVFSEIGKLKKVMLHRPGKELENLLPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEG 64 PI +FSEIG+LKKV+LHRPG+ELENL P ++ LFDDIP+LE A++EH+ FA L++ Sbjct: 7 PINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNNL 66 Query: 65 IEVLYLEQLAAESLTSP-EIRDQFIEEYLDEANIRDRQTKVAIRELLHGIKDNQELVEKT 123 +E+ Y+E L +E L S + ++FI +++ EA I+ T +++ ++ K Sbjct: 67 VEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSS-LTIDNMISKM 125 Query: 124 MAGIQKVELPEIPDEAKDLTDLVESDYPFAIDPMPNLYFTRDPFATIGNAVSLNHMFADT 183 ++G+ EL L DLV F IDPMPN+ FTRDPFA+IGN V++N MF Sbjct: 126 ISGVVTEELKNYT---SSLDDLVNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTKV 182 Query: 184 RNRETLYGKYIFKYHPIYGGKVDLVYNREEDTRIEGGDELVLSKDVLAVGISQRTDAASI 243 R RET++ +YIFKYHP+Y V + NR E+ +EGGDELVL+K +L +GIS+RT+A S+ Sbjct: 183 RQRETIFAEYIFKYHPVYKENVPIWLNRWEEASLEGGDELVLNKGLLVIGISERTEAKSV 242 Query: 244 EKLLVNIFKKNVGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLHVYSVTY 303 EKL +++FK F +LAF+ NR +MHLDTVFT +DY FT + +Y +TY Sbjct: 243 EKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSDDMYFSIYVLTY 302 Query: 304 ENEK--LKIVEEKGDLAELLAQNLGVEKVHLIRCGGGNIVAAAREQWNDGSNTLTIAPGV 361 + I +EK + ++L+ LG K+ +I+C GG+++ AREQWNDG+N L IAPG Sbjct: 303 NPSSSKIHIKKEKARIKDVLSFYLG-RKIDIIKCAGGDLIHGAREQWNDGANVLAIAPGE 361 Query: 362 VVVYDRNTVTNKILEEYGLRLIKIRGSELVRGRGGPRCMSMPFEREEV 409 ++ Y RN VTNK+ EE G+++ +I SEL RGRGGPRCMSMP RE++ Sbjct: 362 IIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 406 bits (1046), Expect = e-146 Identities = 139/312 (44%), Positives = 204/312 (65%), Gaps = 5/312 (1%) Query: 4 RKIVVALGGNAIL--SSDPSAKAQQEALVETAKHLVKLIKNGDDLIITHGNGPQVGNLLL 61 +++V+ALGGNA+ S + + + +TA+ + ++I G +++ITHGNGPQVG+LLL Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 62 QHLASDSEKN-PAFPLDSLVAMTEGSIGFWLKNALQNALLDEGIEKNVASVVTQVVVDKN 120 A + PA P+D AM++G IG+ ++ AL+N L G+EK V +++TQ +VDKN Sbjct: 63 HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKN 122 Query: 121 DPAFVNLSKPIGPFYSEEEAKAEAEKSGATFKEDAGRGWRKVVASPKPVDIKEIETIRTL 180 DPAF N +KP+GPFY EE AK A + G KED+GRGWR+VV SP P E ETI+ L Sbjct: 123 DPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKL 182 Query: 181 LNNGQVVVAAGGGGIPVVKENNGHLTGVEAVIDKDFASQRLAELVDADLFIVLTGVDYVF 240 + G +V+A+GGGG+PV+ E +G + GVEAVIDKD A ++LAE V+AD+F++LT V+ Sbjct: 183 VERGVIVIASGGGGVPVILE-DGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAA 241 Query: 241 VNYNKPNQEKLEHVNVAQLEEYIKQDQFAPGSMLPKVEAAIAFVNGRPEGKAVITSLENL 300 + Y ++ L V V +L +Y ++ F GSM PKV AAI F+ +A+I LE Sbjct: 242 LYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIE-WGGERAIIAHLEKA 300 Query: 301 GALIESESGTII 312 +E ++GT + Sbjct: 301 VEALEGKTGTQV 312
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 37.3 bits (86), Expect = 2e-04 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 19/134 (14%) Query: 279 FIPWTDLGVTIF-DDFNAWLTGLPVIGNIVGSSTSALGTWYFPEGAMLFAFMGILIGVIY 337 I T+ GVTIF + L GNI+G +G G +L F L + Sbjct: 99 LIGLTERGVTIFAPQLDKLLQKYQKAGNILGGGAENIGDNLGKAGGILSTFQNFLGTALS 158 Query: 338 GLKEDKIISSFMNG----------AADLLSVALIVAIARGIQVIMNDGMITDTILNWGK- 386 +K D++I +G A+ L L+ +A + + + G Sbjct: 159 SMKIDELIKKQKSGGNVSSSELAKASIELINQLVDTVASLNNNV---NSFSQQLNTLGSV 215 Query: 387 ----EGLSGLSSQV 396 + L+G+ +++ Sbjct: 216 LSNTKHLNGVGNKL 229
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.7 bits (74), Expect = 1e-04 Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 12 ERKQRFSLRKYAIGACSVLLGTSLFFAGMGAQPVQDTETSSALISSHYLDEQDLSEKLKS 71 + +SLRK G SV + ++ AG+ + + ++ + Q+ ++K + Sbjct: 5 NTNRHYSLRKLKTGTASVAVALTVLGAGLVVNTNEVSAVATRSQTDTLEKVQERADKFEI 64 Query: 72 ELQWFELENKLL 83 E +L+N L Sbjct: 65 ENNTLKLKNSDL 76
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 25.9 bits (57), Expect = 0.016 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Query: 39 VDLMEFILTLEDEFSIEISDEEIDQLQSVGDV 70 V+LM++I LED IE + + LQ GDV Sbjct: 266 VELMDYIQALEDALGIEA-KKNMLPLQP-GDV 295
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.5 bits (68), Expect = 0.027 Identities = 34/209 (16%), Positives = 76/209 (36%), Gaps = 26/209 (12%) Query: 315 NLFFMTLLALPIYTVIIFAFMKPFEKMNRDTMEANAVLSSSIIEDINGIETIKSLTSESQ 374 N F ++ ++V++FA + +E NA+ DI + +E + Sbjct: 4 NKFIPNKFSIISFSVLLFAIS------SSQAIEVNAMNEHYTESDIKRNHKTEKNKTEKE 57 Query: 375 RYQKIDKEFVDYLKKSFTYSRAESQQKALKKVAHLLLNVGILWMGAVLVMDGKMSLGQLI 434 +++ V + T + + Q LKK+ +L + G + D + Sbjct: 58 KFKDSINNLVKTEFTNETLDKIQQTQDLLKKIPKDVLEIYSELGGEIYFTDID------L 111 Query: 435 TYNTLLVYFTNPLENIINLQTKLQTAQVANNRLNEVYLVASEFEEKKTV---EDLSLMKG 491 + L + +N +N + + ++ + E K + +D ++ Sbjct: 112 VEHKELQDLSEEEKNSMNSRGE-------KVPFASRFVFEKKRETPKLIINIKDYAI--N 162 Query: 492 DMTFKQVHYKYGYG--RDVLSDINLTVPQ 518 K+V+Y+ G G D++S P+ Sbjct: 163 SEQSKEVYYEIGKGISLDIISKDKSLDPE 191
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 59.8 bits (145), Expect = 7e-12 Identities = 66/444 (14%), Positives = 145/444 (32%), Gaps = 60/444 (13%) Query: 27 MALLLVFLLGFATVAEKEMSLSTRATVEPSRILANIQSTSN---NRILVNHLEENKLVKK 83 M L++ + + + + E+ + + S I+ N I+V +E + V+K Sbjct: 65 MGFLVIAFI-LSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIV---KEGESVRK 120 Query: 84 GDLLVQYQEGAEGVQAESYASQLDMLKDQKKQLEYLQKSLQEGENHFPEEDKFGYQATFR 143 GD+L++ A G +A++ +Q +L+ + +Q Y S N PE Sbjct: 121 GDVLLKLT--ALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQN 178 Query: 144 DYISQAGSLRASTSQQNETIASQNAAASQT----QAEIGNLISQTEAKIRDYQTAKSAIE 199 + L + +Q T +Q +AE ++++ + KS ++ Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238 Query: 200 TGASLAGQNLAYSLYQSYKSQGEENPQTKVQAVAQVEAQISQLESSLATYRVQYAGSGTQ 259 +SL + + + + ++ +S L + + Sbjct: 239 DFSSLLHKQAI----------AKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA--- 285 Query: 260 QAYASGLSSQLESLKSQHLAKVGQELTLLAQKILEAESGKKVQGNLLDKGKVTASEDGVL 319 + ++ ++ L + + LL ++ + E + A + Sbjct: 286 KEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNE-------ERQQASVIRAPVSVKV 338 Query: 320 HLNPETSDSSMVAEGALLAQLYPS---LEREGKAKLTAYLSSKYVARIKVGDSVR----- 371 ++ +V L + P LE + +K + I VG + Sbjct: 339 QQLKVHTEGGVVTTAETLMVIVPEDDTLEVTAL------VQNKDIGFINVGQNAIIKVEA 392 Query: 372 --YTTTHDAGNQLFLDSTITSIDATATKTEKGNFF-----KIEAETNLTSEQAEKLRYGV 424 YT L + +I+ A + ++ IE T + L G+ Sbjct: 393 FPYTRYGY------LVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGM 446 Query: 425 EGRLQMITGKKSYLRYYLDQFLNK 448 ++ TG +S + Y L Sbjct: 447 AVTAEIKTGMRSVISYLLSPLEES 470
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 31.1 bits (70), Expect = 0.036 Identities = 29/127 (22%), Positives = 41/127 (32%), Gaps = 35/127 (27%) Query: 1101 ANSTSPTLFYNDANQHVAKMVETRIANTNSPWLAGVQVGDIHAIPVSHGEGKFV--VTAE 1158 S + NDA A VE+RI L+ + G G VTA+ Sbjct: 220 TQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIV-----------GNGNVHAQVTAQ 268 Query: 1159 EFAELRDNGQIFSQYVDFNGKPSMDSKYNPNGSVHAIEGITSKNGQIIGKMGHSERYEDG 1218 +DF K + Y+PNG SK ++ SE+ G Sbjct: 269 ---------------LDFANKEQTEEHYSPNGDA-------SKATLRSRQLNISEQVGAG 306 Query: 1219 LFQNIPG 1225 +PG Sbjct: 307 YPGGVPG 313
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 30.0 bits (67), Expect = 0.014 Identities = 11/33 (33%), Positives = 15/33 (45%) Query: 193 YSLVRRVFADYTGEEVLPELEGKKLKEVLLEPT 225 YS R+ F DY E E E K L+ + + Sbjct: 93 YSQTRQYFYDYQIESNPREKEYKNLRNAISKNK 125
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 32.5 bits (74), Expect = 7e-04 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 105 YLPEFPGAHGIEDAWNAGVGQSGVTIHWVDSGVDTGH 141 +P WN G+ GV + +D+G D H Sbjct: 21 EIPRGVEMIQAPAVWNQTRGR-GVKVAVLDTGCDADH 56
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 31.3 bits (71), Expect = 0.008 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 6/90 (6%) Query: 146 DGLALGKGVVVADTVEQAVEAAHEMLLDNKFGDSGA--RVVIEEFLEGEEF----SLFAF 199 D L L KG++V E+ + E L + F + + ++ + + + ++F Sbjct: 220 DELVLNKGLLVIGISERTEAKSVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQ 279 Query: 200 VNGDKFYIMPTAQDHKRAYDGDKGPNTGGM 229 ++ F + + Y P++ + Sbjct: 280 IDYSVFTSFTSDDMYFSIYVLTYNPSSSKI 309
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.4 bits (79), Expect = 4e-04 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 218 LHQMILDQDQIQEIILSLWENSAVLTKTAQQLYLHRNSLQYKIDKWEELTGLQLKE 273 L+ +L + + I+ +L K A L L+RN+L+ KI + G+ + Sbjct: 428 LYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL----GVSVYR 479
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.003 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%) Query: 28 FEPG-KF-YSII--GESGAGKSTLLSLLAGLDSPVEGSILF 64 EPG KF YS++ G G GKSTL++ L GLD + Sbjct: 589 MEPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.3 bits (211), Expect = 2e-21 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%) Query: 2 KILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGLE 61 IL+ +D+ IR ++ L+ GY+ ++ ++ + LV+ D+ MP N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLAEIRKT-SQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSL 104 +L I+K +PVL+++A + A A YL KPF L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDL 108
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.012 Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 30/166 (18%) Query: 288 ILSLSSV--QELRDDRETIDLLQMTQNLVKDYALLAKER-------ELQIDNSLTHQQAY 338 + SLS + LR L +V Y LA + E QI+ ++ Q Sbjct: 197 LTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQ-- 254 Query: 339 LNPSVMKLILSNLISNAIKHSVPGGLVRIGEREGELFIENSCSSEEQEKLAQSFSDNASR 398 V +++ L+ N IKH + + G++ + +++ + + S Sbjct: 255 ----VPPMLVQTLVENGIKHGIAQ-----LPQGGKILL---KGTKDNGTVTLEVENTGSL 302 Query: 399 KVK----GSGMGLFVVKSLLEH---EKLAYRFEMEENRLTFFIDFP 437 +K +G GL V+ L+ + + ++ ++ + P Sbjct: 303 ALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.3 bits (71), Expect = 0.008 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 100 GNLAIYIFASIILVAYLGKYIQYEAWRWIHRLVYLAYILGLFHIYMIMGNRLLTFNLLSF 159 GN A + A +V +L YE+W I V L LG+ + + + + F Sbjct: 869 GNQAPALVAISFVVVFLCLAALYESWS-IPVSVMLVVPLGIVGVLLAATLFNQKND-VYF 926 Query: 160 LVGSYALLGLLA 171 +VG +GL A Sbjct: 927 MVGLLTTIGLSA 938
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.018 Identities = 14/23 (60%), Positives = 16/23 (69%) Query: 35 VVVLLGPSGSGKSTLIRTINGLE 57 VVL G G GKSTLI T+ GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>adhesinb#Adhesin B signature. Length = 310 Score = 27.1 bits (60), Expect = 0.049 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Query: 10 MKKWQTCVLGAGSLLCLTACS-GKSVTSEHQTK 41 MKK + VL + + L ACS KS T +K Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSK 33
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 95.3 bits (237), Expect = 1e-24 Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 6/129 (4%) Query: 10 TILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMPHLN 69 TIL+ +D+ +R L + ++ A YD+ N W I D+++TD+ MP N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVR---ITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 70 GIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDDYLLKPFSRQDIEEMLGKIKQK 129 L +++ P + ++ ++ + F A+ A + G DYL KPF D+ E++G I + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF---DLTELIGIIGRA 118 Query: 130 LDKEEKEEQ 138 L + ++ Sbjct: 119 LAEPKRRPS 127
>PF06580#Sensor histidine kinase Length = 349 Score = 199 bits (508), Expect = 3e-61 Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 9/202 (4%) Query: 357 QEETTRQYQLQALSSQINPHFLYNTLDTIIWMAEFHDSQRVVQVTKSLATYFRLAL-NQG 415 ++ QL AL +QINPHF++N L+ I + D + ++ SL+ R +L Sbjct: 154 MASMAQEAQLMALKAQINPHFMFNALNNIRALIL-EDPTKAREMLTSLSELMRYSLRYSN 212 Query: 416 KDLICLSDEINHVRQYLFIQKQRYGDKLEYEINENVAFDNLVLPKLVLQPLVENALYHGI 475 + L+DE+ V YL + ++ D+L++E N A ++ +P +++Q LVEN + HGI Sbjct: 213 ARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGI 272 Query: 476 KEKEGQGHIKLSVQKQDSGLVIRIEDDGVGFQDAGDSSQSQLKRGGVGLQNVDQRLKLHF 535 + G I L K + + + +E+ G S G GLQNV +RL++ + Sbjct: 273 AQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKES------TGTGLQNVRERLQMLY 326 Query: 536 GANYQMKIDSRPQKGTKVEIYI 557 G Q+K+ + K + I Sbjct: 327 GTEAQIKLSEKQGKVN-AMVLI 347
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 72.4 bits (177), Expect = 2e-14 Identities = 70/389 (17%), Positives = 133/389 (34%), Gaps = 43/389 (11%) Query: 158 GLDTVLEETSAKPGEVTVVEVETPQSTTNQEQARTENQVVETEEAPKEEAPKTEESPKEE 217 + ++ T+ +V + S N+E AR + V AP + +T E+ E Sbjct: 987 KRNQTVDTTNITTPNNIQADVPSVPSN-NEEIARVDEAPV-PPPAPATPS-ETTETVAEN 1043 Query: 218 PKSEVKPTDDTLPKVEEGKEDSAEPAPVEEVGGEVESKSEEKVAVKPESQPSDKPAEESK 277 K E K + E + E A + + +++ E E +E++ Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE-------TKETQ 1096 Query: 278 VEQAGEPVAPREDEKAPVEPEKQPEAPEEEKAVEETPKQEDTQPEVVETKDEAANQPVEE 337 + E ++EKA VE EK E P+ + +PKQE Q E V+ + E A + Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVPK--VTSQVSPKQE--QSETVQPQAEPARENDPT 1152 Query: 338 PKVETPAVEKQTEPTEEPKVEQVGEPVEPREDEKAPVSPEKQPEAPEEEKTAEETPKQED 397 ++ P + T E ++ VE E V+ E P+ Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVV---------ENPENTT 1203 Query: 398 KIKGIGTKEPVDKSELNNQIDKASSVS----PTDYSTASYNALGPVLETAKGVYASEPVK 453 T +P SE +N+ S P + A+ ++ V Sbjct: 1204 P----ATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDR-----------STVA 1248 Query: 454 QPEVNSETKAEKVAANTDAKQSEVNSETASLKTAISGLNTDKVELENQLKIAQGKTETDF 513 ++ S ++ Q + ++ IS L + E + + ++ ++ Sbjct: 1249 LCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNN-EGQYNVWVSNTSMNKNY 1307 Query: 514 SMESWTVLSTAKNKAQEVKDNGTATQEQI 542 S + S+ + Q D + Q+ Sbjct: 1308 SSSQYRRFSSKSTQTQLGWDQTISNNVQL 1336 Score = 63.2 bits (153), Expect = 1e-11 Identities = 74/309 (23%), Positives = 119/309 (38%), Gaps = 25/309 (8%) Query: 255 KSEEKVAVKPESQPSDKPAEESKVEQAGEPVAPREDEKAPVEPEKQPEAPEEEKAVEETP 314 K + V + P++ A+ V E +A R DE APV P E + V E Sbjct: 987 KRNQTVDTTNITTPNNIQADVPSVPSNNEEIA-RVDE-APVPPPAPATPSETTETVAENS 1044 Query: 315 KQEDTQPEVVETKDEAA----NQPVEEPKVETPA------VEKQTEPTEEPKVEQVGEPV 364 KQE E E + +E K A V + T+E + + E Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 365 EPREDEKAPVSPEKQPEAPEEEKTAEETPKQEDKIKGIGTKEPVDKSELNNQIDKASSVS 424 ++EKA V EK E P + T++ +PKQE EP +++ I + S + Sbjct: 1105 TVEKEEKAKVETEKTQEVP--KVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQT 1162 Query: 425 PTDYSTA------SYNALGPVLETAKGVYASEPVKQPEVNSETKAEKVAANTDAKQSEVN 478 T T S N PV E+ + V+ PE N+ + N+++ N Sbjct: 1163 NTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPE-NTTPATTQPTVNSESSNKPKN 1221 Query: 479 SETASLKTAISGLNTDKVELENQLKIAQGKTETDFSMESWTVLSTAKNKAQEVK-DNGTA 537 S+++ + ++ +A S + VLS A+ KAQ V + G A Sbjct: 1222 RHRRSVRSVPHNVEPATTSSNDRSTVALCDL---TSTNTNAVLSDARAKAQFVALNVGKA 1278 Query: 538 TQEQINEAE 546 + I++ E Sbjct: 1279 VSQHISQLE 1287
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 97.0 bits (241), Expect = 2e-26 Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 24/252 (9%) Query: 3 KRVLITGVSSGIGLAQARLFLEKGYQVYGVDQGEKSLL-----EGDFHFLQRDLTLDL-- 55 K ITG + GIG A AR +G + VD + L D+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 56 -----EPIFDWCPQV---DVLCNTAGVLDDYKPLLEQTAQDIQAIFEINYIIPVELTRYY 107 E ++ D+L N AGVL + + ++ +A F +N +R Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLR-PGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 108 LTQMLENKKGIIINMCSIASSLAGGGGHAYTSSKHALAGFTKQLALDYAEAGIQVFGIAP 167 M++ + G I+ + S + + AY SSK A FTK L L+ AE I+ ++P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 168 GAVKTAMT--------AADFEPGGLADWVASETPIKRWIEPEEIAELSLFLASGKASAMQ 219 G+ +T M A+ G + + P+K+ +P +IA+ LFL SG+A + Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 220 GQILTIDGGWSL 231 L +DGG +L Sbjct: 248 MHNLCVDGGATL 259
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 69.4 bits (170), Expect = 2e-15 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 30/224 (13%) Query: 25 VGMIRGEYLLRELNQNILLQSCQEFVKDYLETICSLYSDEEVWYRFTEL-TNTEANCLVG 83 +G+ R E+L + +Q L + +E + Y E + + V R ++ + E + L Sbjct: 293 IGLYRTEFLYMDRDQ---LPTEEEQFEAYKEVVQRMDGKP-VVIRTLDIGGDKELSYL-- 346 Query: 84 TKEFFDEGHPLFGYRGTRRLLACLDEF--QAEAHVVTEVYQTNPNLSVIFPFVNDADQLK 141 + E +P G+R R L D F Q A + Y NL V+FP + ++L+ Sbjct: 347 --QLPKELNPFLGFRAIRLCLEKQDIFRTQLRALLRASTY---GNLKVMFPMIATLEELR 401 Query: 142 QAITVLRQYGFTG-----------KVGTMIELPSAYFDLSSILETGISKIVVGMNDLTSF 190 QA ++++ +VG M+E+PS + + + +G NDL + Sbjct: 402 QAKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKE-VDFFSIGTNDLIQY 460 Query: 191 VFATMRN----SQWHDLESPIMLDMLRDMQDKARKNKINFAVAG 230 A R S + P +L ++ + A + G Sbjct: 461 TMAADRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCG 504
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 2e-21 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Query: 24 IKILLVEDDLGLSNSVFDFLDD-FADVMQVFDGEEGLYEAESGVYDLILLDLMLPEKNGF 82 IL+ +DD + + L DV + +G DL++ D+++P++N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 83 QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKR 140 +L +++ PVL+M+A+ + E GA DYL KPF L EL I L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 34.8 bits (80), Expect = 6e-04 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 9/76 (11%) Query: 314 FRFENRIHRTIVTDQLLLKQL---MTI--LFDNAVKY----TEEDGEIDFLISATDRNLY 364 +FE+R+ + ++ M + L +N +K+ + G+I + + + Sbjct: 234 IQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVT 293 Query: 365 LLVSDNGIGISTEDKK 380 L V + G K+ Sbjct: 294 LEVENTGSLALKNTKE 309
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 30.5 bits (68), Expect = 0.024 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 27/123 (21%) Query: 576 LLAHSALESNWGRSKIAKDK----NNFFGI----------TAYDTTPYLSA--------- 612 +LA +ALES WG+ +I ++ N FG+ T TT Y + Sbjct: 174 ILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKF 233 Query: 613 KTFDDVDKGILGATKWIKENYIDRGRTFLGNKASGM----NVEYASDPYWGEKIASVMMK 668 + + + + + N T + G + YA+DP++ K+ +++ + Sbjct: 234 RVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQ 293 Query: 669 INE 671 + Sbjct: 294 MKS 296
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 684 bits (1766), Expect = 0.0 Identities = 197/577 (34%), Positives = 323/577 (55%), Gaps = 31/577 (5%) Query: 10 MSFDGFFLHHIVEELRSELVNGRIQKINQPFEQELVLQIRSNRQSHRLLLSAHPVFGRIQ 69 M+ DG FL+ I++EL++ ++NG+I K+NQP + E++L IR R S +LL+S+ + RI Sbjct: 1 MALDGIFLYSIIDELKNTIINGKIDKVNQPEKDEIILNIRKGRLSFKLLISSSSNYPRIH 60 Query: 70 LTQTTFENPAQPSTFIMVLRKYLQGALIESIEQVENDRIVEITVSNKNEIGDHIQATLII 129 LT T NP + F MVLRKY+ A I I Q+ DRIV I + +E+G + +LII Sbjct: 61 LTDLTKPNPIKAPMFCMVLRKYISNAKIVDIHQINQDRIVVIDFESTDELGFNSIYSLII 120 Query: 130 EIMGKHSNILLVDKSSHKILEVIKHVGFSQNSYRTLLPGSTYIAPPSTKSLNPFTIKDEK 189 EIMG+HSN+ L+ K + I++ IKH+ N+YR++ PG Y+ PP + LNPF + Sbjct: 121 EIMGRHSNMTLIRKRDNIIMDSIKHITPDINTYRSIYPGIEYVYPPKSPKLNPFDFSYDM 180 Query: 190 LFEILQ--TQELTAKNLQSLFQGLGRDTANELERILVSEKL---------------SAFR 232 + + + +L +F G+ + ++E+ L + + F+ Sbjct: 181 IENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVEVCKDLFK 240 Query: 233 NFFNQETKPCLTETSFSPVPFA--------NQVGEPFANLSDLLDTYYKDKAERDRVKQQ 284 + + + + S V F + + + S LL+ +Y K + DR+K + Sbjct: 241 EIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAKDKSDRLKSK 300 Query: 285 ASELIRRVENELQKNRHKLKKQEKELLATDNAEEFRQKGELLTTFLHQVPNDQDQVILDN 344 +S+L + V N + + K K L ++ + F+ GELLT ++ + + L N Sbjct: 301 SSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYALKKGLSHIELAN 360 Query: 345 YYTNQ--PIMIALDKALTPNQNAQRYFKRYQKLKEAVKYLTDLIEETKATILYLESVETV 402 YY+ + I LD+ TP+QN Q Y+K+Y KLK++ + + + + + + YL SV T Sbjct: 361 YYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTN 420 Query: 403 LNQA-GLEEIAEIREELIQTGFIRRRQ--REKIQKRKKLEQYLASDGKTIIYVGRNNLQN 459 +N A +EI EI++ELI+TG+I+ ++ + K K K +++ DG IYVG+NN+QN Sbjct: 421 INNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISKDGID-IYVGKNNIQN 479 Query: 460 EELTFKMARKEELWFHAKDIPGSHVVISGNLDPSDAVKTDAAELAAYFSQGRLSNLVQVD 519 + LT K A K ++WFH K+IPGSHV++ +D ++ +AA LAAY+S+ + S+ V VD Sbjct: 480 DYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIPESTLLEAANLAAYYSKSQNSSNVPVD 539 Query: 520 MIEVKKLNKPTGGKPGFVTYTGQKTLRVTPDSKKIAS 556 EVK + KP G KPG V Y+ +T+ VTP + + + Sbjct: 540 YTEVKNVKKPNGAKPGMVIYSTNQTIYVTPTNPNLKN 576
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 36.4 bits (84), Expect = 1e-04 Identities = 43/207 (20%), Positives = 80/207 (38%), Gaps = 34/207 (16%) Query: 3 FKSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPG 62 + SG + LG + G + N ++ ++ I T+ + + ++ IDTPG Sbjct: 25 YNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS-------FQWENTKVNIIDTPG 77 Query: 63 IHKPKTALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNK 122 H DF+ E Y +L +D + ++ A + ++ L+ +P I +NK Sbjct: 78 -HM------DFLAE-VYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINK 129 Query: 123 IDKVHPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQIT 182 ID+ + ID D KE + + V ++ N E Q+ D + Sbjct: 130 IDQ-------NGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQW---DTVI 179 Query: 183 DHPERFLVSEMVREKVL---HLTREEI 206 + + L EK + L E+ Sbjct: 180 EGNDDLL------EKYMSGKSLEALEL 200
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 106 bits (265), Expect = 2e-27 Identities = 69/357 (19%), Positives = 142/357 (39%), Gaps = 9/357 (2%) Query: 10 LRIAWFGNFLTGASISLVVPFMPIFVENLGVGSQQVAFYAGLAISVSAISAALFSPIWGI 69 L + L I L++P +P + +L V S V + G+ +++ A+ +P+ G Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDL-VHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 70 LADKYGRKPMMIRAGLAMTITMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129 L+D++GR+P+++ + + +A P ++ L R++ G+ A A IA Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITD 125 Query: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAELFGIRTVFLLVGSFLFLAAILTICFIKED 189 ++ G +S G + GP +GG + F F + L + + E Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 190 FQPVAKEKAIPTKELFTSVKYPYL---LLNLFLTSFVIQFSAQSIGPILALYVRDLGQTE 246 + + S ++ + L F++Q Q + ++ D + Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 247 NLLFVSGLIVSSMG-FSSMMSAGVMGKLGDKVGNHRLLVVAQFYSVIIYLLCANASSPLQ 305 G+ +++ G S+ A + G + ++G R L++ Y+L A A+ Sbjct: 245 ATTI--GISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWM 302 Query: 306 LGLYRFLFGLGTGALIPGVNALLSKMTPKAGISRVFAFNQVFFYLGGVVGPMAGSAV 362 L G G +P + A+LS+ + ++ L +VGP+ +A+ Sbjct: 303 AFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Score = 57.5 bits (139), Expect = 3e-11 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 2/178 (1%) Query: 214 LLNLFLTSFVIQFSAQSIGPILALYVRDLGQTENLLFVSGLIVSSMGFSSMMSAGVMGKL 273 L+ + T + I P+L +RDL + ++ G++++ A V+G L Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 274 GDKVGNHRLLVVAQFYSVIIYLLCANASSPLQLGLYRFLFGLGTGALIPGVNALLSKMTP 333 D+ G +L+V+ + + Y + A A L + R + G+ TGA A ++ +T Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITD 125 Query: 334 KAGISRVFAFNQVFFYLGGVVGPMAGSAVAGQFGYHAVFYATSLCVAFSCLFNLIQFR 391 +R F F F G V GP+ G + G F HA F+A + + L Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLG-GLMGGFSPHAPFFAAAALNGLNFLTGCFLLP 182
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 29.9 bits (67), Expect = 3e-04 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Query: 1 MYNLLLTILLVLSVVIVIAIFMQPTK--NQSSNVFDASSGDLFERSKARGFEAVMQRLTG 58 MY LL + L++++ +V I +Q K + ++ +S LF S + F M R+T Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNF---MTRMTA 57 Query: 59 ILVFFWLAIALALTVLSS 76 +L + I+L L ++S Sbjct: 58 LLATLFFIISLVLGNINS 75
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 33.9 bits (77), Expect = 0.002 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 2/88 (2%) Query: 29 FVKEGEILLEIMTDKVSMELEAEEDGYLIAILKGDGETVPVTEVIGYLGEERENIPTAGA 88 V +GE LE +S+ + G +KG+ + V E +E EN Sbjct: 944 TVLKGEKTLEPGRYYLSVYTYDNQSGTYTVNVKGNLKN-EVKETAKDAIKEVENNNDFDK 1002 Query: 89 ASPEASSVPVAST-SNDDDKSDDAFDIV 115 A S+ + T SNDD K + DI Sbjct: 1003 AMKVDSNSKIVGTLSNDDLKDIYSIDIQ 1030
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.020 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 14/87 (16%) Query: 73 RQYFESQ------EIQTLAI-------NSKEQVTVKVVTDAAKKLMADKIARQKERGIQI 119 R + ++Q ++ + + + ++ + K ++ +AR E G + Sbjct: 536 RDWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKF 595 Query: 120 ETLRTMIIGIPNAGKSTLMNRLAGKKI 146 + + G GKSTL+N L G Sbjct: 596 DYSVV-LEGTGGIGKSTLINTLVGLDF 621
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 33.0 bits (75), Expect = 0.008 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 10/69 (14%) Query: 168 ASTVSPVEQPK--------VVTEKGEPEVQPALPEAVVTDKGEPEVQPT--LPEAVVTDK 217 S +E P +VT Q P + EPE +P P+ Sbjct: 30 TSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVI 89 Query: 218 GEPEVHEKP 226 +P+ KP Sbjct: 90 EKPKPKPKP 98
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 35.3 bits (81), Expect = 0.001 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 13/112 (11%) Query: 473 PELSEAVVTDKGEPAVQPELPEAVVSDKGEPAVQPELPEAVVTD---KGETEVQPESPDT 529 P ++ + PA P+AV EP V+PE + + + ++ P Sbjct: 44 PAPAQPISVTMVAPADLEP-PQAVQPPP-EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 101 Query: 530 VVSDKGEPKQVAPLP----EYTGPQASAIVEPEQVAPLPEYTGVQAGSIVEP 577 +PK V + + ++ E AP + + +P Sbjct: 102 KP----KPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKP 149
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 30.2 bits (68), Expect = 0.004 Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 16/80 (20%) Query: 19 QILDIINKDTHKEIIAKLDYDAP--SCPECGSQMKKYDFQKPSKIPYLETTGMPSRILLR 76 + N D + P CP C + + IP L S + LR Sbjct: 48 EYRSYFNPDDEGVDEPPYNLMVPRSCCPHCNHPITALE-----NIPLL------SWLWLR 96 Query: 77 KRRFKCYHCSKMMVAETPLV 96 R C C + A PLV Sbjct: 97 GR---CRGCQAPISARYPLV 113
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.5 bits (84), Expect = 2e-05 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 9/92 (9%) Query: 25 SFPAEKQQLSHILEESIRKCADTFLLARDENQLLGYI-LSSPQSDNPQCLKVHSLVIESD 83 + + +S++ EE L EN +G I + S + + + + D Sbjct: 49 QYEDDDMDVSYVEEE-----GKAAFLYYLENNCIGRIKIRSNWNGY---ALIEDIAVAKD 100 Query: 84 HQRQGLGTLLLAALKEVAVELDYKGIRLESPD 115 ++++G+GT LL E A E + G+ LE+ D Sbjct: 101 YRKKGVGTALLHKAIEWAKENHFCGLMLETQD 132
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 31.7 bits (72), Expect = 0.006 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 306 IVNDTVI--IDDFA-----HHPTEIIATLDAARQKYPSKEIVAVFQPHTFTRTIA 353 ++ D V+ I D H+P I + A Q P +VAVF F +T+ Sbjct: 103 LITDDVLKAITDCIELAPLHNPANIEG-IKACTQIMPDVPMVAVFDT-AFHQTMP 155
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 30.1 bits (68), Expect = 0.005 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 4 ERFPLVSDDEVMLTEMPVMNLYDESDLISNIKGEYRDKNYLEWAPITEE 52 ERFP++S +V+L V+ D D K YR ++ ++++P++E+ Sbjct: 60 ERFPMMSTFKVVLC-GAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK 107
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 29.3 bits (65), Expect = 0.025 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 205 NGK--VRLVGYKETLKKAGITYSEGLVFESKYSYDDGYALAERLISSNATAAVVTGDELA 262 NGK ++ VG KAG+T+ L+ + D Y++AE + TA + G Sbjct: 199 NGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAW 258 Query: 263 AGVLNGLADKGVSVPEDFE 281 + + + GV+V F+ Sbjct: 259 SNIDTSKVNYGVTVLPTFK 277
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.1 bits (182), Expect = 9e-18 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 2 KVLVAEDQSMLRDAMCQLLAFQADVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTG 61 +LVA+D + +R + Q L+ V N + + D+ + DV MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 LEVLEWIRAEKLETKVVVVTTFKRPGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 121 ++L I+ + + V+V++ +A + G Y+ K + +L+ + L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 122 KE 123 K Sbjct: 123 KR 124
>PF06580#Sensor histidine kinase Length = 349 Score = 39.5 bits (92), Expect = 1e-05 Identities = 67/376 (17%), Positives = 127/376 (33%), Gaps = 67/376 (17%) Query: 1 MLERLKSIHYMFWASLIFMLFPILPVVTGWLSAWHLLIDILFVVAYLGVLTTKSQRLSWL 60 L L M+F I + G + AY + +R WL Sbjct: 24 TLTGFGFASLYGSPKLHSMIFNIAISLMGLV----------LTHAYRSFI----KRQGWL 69 Query: 61 YWGLMLTYVVGNTAFVAVNYIWFFFFLSNLLSYHFSVGGLKSLHVWTFLLAQVLVVGQLL 120 + + A V + +WF S F + T +A L + + Sbjct: 70 KLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAF---------INTKPVAFTLPLALSI 120 Query: 121 IFQRIEVEFLFYLLVILAFVDLMTFGLVRIRIVEDLKEAQAKQNAQINLLLAENERSRIG 180 IF + V F++ LL + F + ++ K A Q AQ+ L +++I Sbjct: 121 IFNVVVVTFMWSLL----YFGWHFFKNYKQAEIDQWKMASMAQEAQLMAL-----KAQIN 171 Query: 181 QDLHDSLGHTFAMLSVKTDLALQLFQMEAYPQVEKELKEIHQISKDSMNEVRTIVENLKS 240 + + + +E + + L + ++ + S+ + Sbjct: 172 PHF---MFNALNNIRALI--------LEDPTKAREMLTSLSELMRYSLRYSNA-----RQ 215 Query: 241 RTLTSELETVKKMLEIAGI----EVETDNQLDTASLTQELESTASMILLELVTNIIKHAK 296 +L EL V L++A I ++ +NQ++ A + ++ M++ LV N IKH Sbjct: 216 VSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQV---PPMLVQTLVENGIKHGI 272 Query: 297 ASKA-----YLKLERAEKELILTVSDDGCGFAFLKGDE----LHTVRDRVSPFSGE---V 344 A LK + + L V + G + L VR+R+ G + Sbjct: 273 AQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQI 332 Query: 345 SVISQKHPTEVQVRLP 360 + ++ V +P Sbjct: 333 KLSEKQGKVNAMVLIP 348
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.017 Identities = 11/32 (34%), Positives = 16/32 (50%) Query: 31 CVALIGPNGAGKTTLLDCLLGDKLVTSGQVSI 62 V L G G GK+TL++ L+G + I Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>PF05043#Transcriptional activator Length = 493 Score = 43.4 bits (102), Expect = 1e-06 Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 8/169 (4%) Query: 5 DLMEKAECGQFSILSFLLQE-SQTTVKAVMEETGFSKATLTKYVTLLNDKALDSGLELAI 63 DL+ K Q +L L + + E ++ + ++ + D + Sbjct: 3 DLLSKKSHRQLELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDL---IFH 59 Query: 64 HSEDENLRLSIGAATKGRDIRSLFLESAVKYQILVYLLYHQQFLAHQLAQELVISEATLG 123 S + ++ + F S + IL ++ +++ A + +E IS ++L Sbjct: 60 SSTNGIRIINTDDSDIEMVYHHFFKHSTH-FSILEFIFFNEGCQAESICKEFYISSSSLY 118 Query: 124 RHLAGLNQILS---EFDLSIQNGRWRGPEHQIRYFYFCLFRKVWSSQEW 169 R ++ +N+++ +F++S+ + G E IRYF+ F + + EW Sbjct: 119 RIISQINKVIKRQFQFEVSLTPVQIIGNERDIRYFFAQYFSEKYYFLEW 167
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 62.8 bits (152), Expect = 3e-12 Identities = 48/314 (15%), Positives = 95/314 (30%), Gaps = 52/314 (16%) Query: 178 TLELEIAEFDVKVKEAELELVKKEADESRNEGTINQAKAKVESEKAEATRLKKIKTDR-- 235 L +D+ E E + I V S E R+ + Sbjct: 970 KLRNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPA 1029 Query: 236 --------EKAEEEAKRRADAKEQDESKRRKSRVKRGDLGEQATPDKKENDAKSSDSSVG 287 E E +K+ + E++E ++ + ++ ++A + K N + + G Sbjct: 1030 PATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089 Query: 288 EETLPSPSLKPGKKVAEAQKKVEEAKKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKVK 347 ET K+ + K +K + K E + Sbjct: 1090 SET---------KETQTTETKETATVEKEEKAKVETEK---------------------- 1118 Query: 348 EAELELVKEEAKESQNEEKIKQAKAKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDK 407 +E + ++ KQ +++ +AE R + + K+ + + A E Sbjct: 1119 -------TQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 408 VKEKPAEQPQPAPAPQPEKPAPKPENPAEQPKAEKPADQQAEEDYA-RRSEEEYNRLTQQ 466 KE + QP E P+ PA Q + + +R + + Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVV---ENPENTTPATTQPTVNSESSNKPKNRHRRSVR 1228 Query: 467 QPPKTEKPAQPSTP 480 P +PA S+ Sbjct: 1229 SVPHNVEPATTSSN 1242 Score = 58.5 bits (141), Expect = 7e-11 Identities = 43/223 (19%), Positives = 83/223 (37%), Gaps = 12/223 (5%) Query: 270 ATPDKKENDAKSSDSSVGE----ETLPSPSLKPGKKVAEAQKKVEEAKKKAKDQKEEDRR 325 TP+ + D S S+ E + P P P + E +K+++K ++ ++ Sbjct: 998 TTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQD 1057 Query: 326 NYPTNTYKTLELEIAESDVKVKEAELELVKEEAKESQNEEKIKQAKAKVESKKAEATRLE 385 T + A+S+VK E+ + ++ + + + A VE + E Sbjct: 1058 ATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE-------E 1110 Query: 386 NIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPAPQPEKPAPKPENPAEQPKAEKPAD 445 K + +K +E K + K ++ QPQ PA + + P + P Q + Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND-PTVNIKEPQSQTNTTADTE 1169 Query: 446 QQAEEDYARRSEEEYNRLTQQQPPKTEKPAQPSTPKTGWKQEN 488 Q A+E + + T + + +TP T N Sbjct: 1170 QPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212 Score = 56.6 bits (136), Expect = 3e-10 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 11/207 (5%) Query: 288 EETLPSPSLKPGKKVAEAQKKVE-EAKKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKV 346 +T+ + ++ + V ++ A+ + P +T E S + Sbjct: 989 NQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQES 1048 Query: 347 KEAELELVKEEAKESQNEEKIKQAKAKVES--KKAEATRL--ENIKTDRKKAEEEAKRKA 402 K E +QN E K+AK+ V++ + E + E +T + +E A + Sbjct: 1049 KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEK 1108 Query: 403 AEEDKV-KEKPAEQPQPAPAPQPEKPAPKPENPAEQPKAEKPADQQAEEDYARRSEEEYN 461 E+ KV EK E P+ P++ + P +P E +E + + N Sbjct: 1109 EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE-----PQSQTN 1163 Query: 462 RLTQQQPPKTEKPAQPSTPKTGWKQEN 488 + P E + P T N Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVN 1190
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.6 bits (199), Expect = 7e-20 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 3 ILVADDEEMIREGIAAFLTEEGYHVIMAKDGQEVLEKFQDLPIHLMVLDLMMPRKSGFEV 62 ILVADD+ IR + L+ GY V + + + L+V D++MP ++ F++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 63 LKEINQ-KHDIPVIVLSALGDETTQSQVFDLYADDHVTKPFSL---VLLVKRIKALIRR 117 L I + + D+PV+V+SA T + + A D++ KPF L + ++ R A +R Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.0 bits (78), Expect = 0.003 Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 28/172 (16%) Query: 502 KYLNLEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKRPIGSFMFLGPTGVGKTELAKA 561 L +++ ++G+ A+ I R + R + + M G +G GK +A+A Sbjct: 127 SKLEDDSQDGMPLVGRSAAMQEIYRVLAR----LMQTDLTL---MITGESGTGKELVARA 179 Query: 562 LAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSV---- 617 L + + +M+ S L G E G T Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKGAFTGAQTRSTGRFEQAE 231 Query: 618 ---LLFDEVEKAHPDIFNVLLQVLDDGVLT---DSKGRKVDFSNTIIIMTSN 663 L DE+ D LL+VL G T + D I+ +N Sbjct: 232 GGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN 280