>PF01206#SirA family protein Length = 76 Score = 96.0 bits (239), Expect = 3e-30 Identities = 27/71 (38%), Positives = 42/71 (59%) Query: 10 HTLEAEGLRCPEPVMMVRKTIRTMLDGEVLLVTADDPSTTRDIPSFCRFMDHQLLGAQID 69 +L+A GL CP P++ +KT+ TM GEVL V A DP + +D SF + H+LL + + Sbjct: 6 QSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKEE 65 Query: 70 QLPYQYLIKKG 80 Y + +K+ Sbjct: 66 DGTYHFRLKRA 76
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 30.9 bits (70), Expect = 0.007 Identities = 11/28 (39%), Positives = 17/28 (60%) Query: 151 ILVTGASGGVGSVAVTLLAQLGYKVVAV 178 LVTGA+G +G L + G++VV + Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGI 30
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.7 bits (85), Expect = 2e-04 Identities = 37/178 (20%), Positives = 61/178 (34%), Gaps = 51/178 (28%) Query: 189 RDLQDIIGQ----QQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSDEEAM 244 +D ++G+ Q+ R L + L+ G GTGK ++A L D Sbjct: 134 QDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGK-------- 185 Query: 245 ETASIASLTQQEINQHNWKLRPFRAPH-----HSSSMAALVG-------GGTIPRPGEIS 292 + PF A + + L G G G Sbjct: 186 -----------------RRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFE 228 Query: 293 LAHNGLLFLDEM----PEFERKVLDSLREPLESGEIVISRAQGKTRFPARFQLVGALN 346 A G LFLDE+ + + ++L L++ GE + G+T + ++V A N Sbjct: 229 QAEGGTLFLDEIGDMPMDAQTRLLRVLQQ----GE--YTTVGGRTPIRSDVRIVAATN 280
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 29.3 bits (65), Expect = 0.022 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 4/37 (10%) Query: 25 PDLIWYALESIGIRAESGFL----PLNSYENRVYQFT 57 PD+I++A + G A+SG L P ++++++Y FT Sbjct: 83 PDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFT 119
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 26.2 bits (57), Expect = 0.024 Identities = 13/40 (32%), Positives = 21/40 (52%) Query: 45 SQIIINRQEPMREIWLASKSGGYHFKSIDGEWICSKTGLE 84 S ++ N QEP L + GGY FK +G++ G++ Sbjct: 171 SALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVD 210
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 31.5 bits (71), Expect = 0.005 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 10/131 (7%) Query: 151 TDACRLISKFTYIYGSGSAPHDLRESYKLHR-LGALEEHLDEIMYEILGWVSDVLTLAAE 209 + RL +K Y+ G S D R L ++ +H+ + +YE L D++ E Sbjct: 279 FETVRLANKGQYVIGVDS---DQGMIQDKDRILTSVLKHIKQAVYETL---LDLILEKEE 332 Query: 210 KRQPTIVRAKDFGARLGEIESKYRQ--KTILNYFCNRSSESEDVQNTIKDAPNYIKQLNL 267 +P +V+ K + ++ + N+F N + E + N IK+A K+L Sbjct: 333 GYKPYVVKDKKADKKWSHFGTQKEKWIGVAENHFSN-TEEQAKINNKIKEAIKMFKELPE 391 Query: 268 INVDDSELEEA 278 V ++A Sbjct: 392 DFVKYINSDKA 402
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 46.4 bits (110), Expect = 5e-09 Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 1 MSKNQGFTLIELIIAIVILGVIAVIAAPRFINISKDAKANTMLSVAAGMESAL 53 K +GFTL+E+++ IVI+GV+A + P + + A +S +E+AL Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENAL 56
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 38.1 bits (88), Expect = 1e-04 Identities = 49/265 (18%), Positives = 93/265 (35%), Gaps = 19/265 (7%) Query: 362 AEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGESASLEG 421 AEK EAE R +E++ E E+ + ++ A+ A K+ +A E Sbjct: 146 AEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSAAQSEV 205 Query: 422 SSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAAIEA 481 + E RLS I + ++K L + L + + + L + A Sbjct: 206 VKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNE----LAQASAKYKELDELVKKLSPRA 261 Query: 482 ARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKLETDIVV 541 ++ F V R ++ +Q+ ++R + + Sbjct: 262 NDPLQNRPFFEATRRRVGAGKIREEKQ--------KQVTASETRINRINADITQIQKAIS 313 Query: 542 EKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLSIKLSEAAS 601 + +N N I+ V +A NL+ A S + + ++ + L+ K E S Sbjct: 314 QVSNNRNAGIARVHEAEE-----NLKKAQNNLLNSQIKDAVDATVSFYQTLTEKYGEKYS 368 Query: 602 NAGTEM--NAQVSKVKEQNELLNEF 624 E+ ++ K+ NE L F Sbjct: 369 KMAQELADKSKGKKIGNVNEALAAF 393
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.8 bits (67), Expect = 0.024 Identities = 33/203 (16%), Positives = 68/203 (33%), Gaps = 33/203 (16%) Query: 259 VVYRLLSQLNIELKGKIKVGKANTKQAQKIASHH---SQPLPVLLKTMLQESDNLIADTL 315 V + + +L+ KI + + ++ H + L + SDN A+ L Sbjct: 75 AVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDNSAANLL 134 Query: 316 TKALGHRFYSQPGSFTNGTQAIKQIFYSRTGISLEDTQLADGSGLSRNNRMRPQVMLETL 375 +G P T ++QI + T + +T+L + + P M TL Sbjct: 135 LATVG-----GPAGLT---AFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATL 186 Query: 376 RYLYQHEAELGLIAMLPSAGESGTLQYRRSMRAPQISGQ-IKA----------KSGSL-Y 423 R L + Q + M +++G I++ K+G+ Sbjct: 187 RKLLTSQR----------LSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGAGER 236 Query: 424 GTYNMAGFVMDENQRPKTLFVQF 446 G + + N+ + + + Sbjct: 237 GARGIVALLGPNNKAERIVVIYL 259
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 82.7 bits (204), Expect = 1e-19 Identities = 91/397 (22%), Positives = 151/397 (38%), Gaps = 70/397 (17%) Query: 10 MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEAR--LSLKDG 67 M + ++AL + A A A+A + +Y+ G L++ G+ + S Sbjct: 1 MKRKVLALVIPALLAAGAAHA-----------AEIYNKDGNKLDLYGKVDGLHYFSDDSS 49 Query: 68 KAQDNSRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126 K D + +R+ F G+ +IND L G G +E N +N+ R +AG+ G Y Sbjct: 50 KDGDQTYMRVGFKGETQINDQLTGYGQWEYNVQANTTEGEGANSW--TRLAFAGLKFGDY 107 Query: 127 GEVTYGKNDGALGVITDFTDIMSYHG--NTAAEKIAVADRVDNMLAYKGQ--FG-----D 177 G YG+N G L + +TD++ G + + R + + Y+ FG + Sbjct: 108 GSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFFGLVDGLN 167 Query: 178 LGVKASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQ 237 ++ + ++A D N + DG+ +S Y G GF+ GA Y Sbjct: 168 FALQYQGKNESQSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIG-MGFSAGAAYTTS 226 Query: 238 DDQNE----------------YMLAASYRMENLYFAGLFTDGELAKDVDYTGYELAAGYK 281 D NE + Y N+Y A ++++ T G Sbjct: 227 DRTNEQVNAGGTIAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVA 286 Query: 282 LGQAAFTAT------------------------YNNAETAKETSADNFAIDATYYFKPNF 317 F T YNN + + ATYYF NF Sbjct: 287 NKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNF 346 Query: 318 RSYISYQFNLLDSD----KVGKVASEDELAIGLRYDF 350 +Y+ Y+ NLLD D K ++++D +A+G+ Y F Sbjct: 347 STYVDYKINLLDDDDPFYKDAGISTDDIVALGMVYQF 383
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 6e-04 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 18/82 (21%) Query: 192 VLMVGPPGTGKTLLAKAI---AGEAKVPFFT-----ISGSDFVEMFVGV------GASRV 237 +++ G GTGK L+A+A+ PF I G GA Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR 222 Query: 238 RD-MFEQAKKASPCIIFIDEID 258 FEQA+ + +F+DEI Sbjct: 223 STGRFEQAEGGT---LFLDEIG 241
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 137 bits (346), Expect = 1e-45 Identities = 62/112 (55%), Positives = 88/112 (78%), Gaps = 5/112 (4%) Query: 1 MFTVLLVIYLLAAVAIIGLVLIQQGKGADMGASFGAGASNTVFGASGSGNFLTRMTAIFA 60 M+ LLV++L+ A+ ++GL+++QQGKGADMGASFGAGAS T+FG+SGSGNF+TRMTA+ A Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 61 TVFFVISLVLGNMSTHKTE--SQWVDPSQGQVIQQAGDSVSEAPAKSSDEIP 110 T+FF+ISLVLGN++++KT S+W + S +Q + APAK + +IP Sbjct: 61 TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPA---APAKPTSDIP 109
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 74.1 bits (182), Expect = 1e-15 Identities = 68/313 (21%), Positives = 107/313 (34%), Gaps = 77/313 (24%) Query: 404 IMGHVDHGKTSTLDYIRRTHVASGEAG------------------GITQHIGAYHVETPN 445 ++ HVD GKT+ + + A E G GIT G + N Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 446 GMITFLDTPGHAAFTAMRARGAQATDIVVLVVAADDGVMPQTVEAIQHAKAAGVPLIVAV 505 + +DTPGH F A R D +L+++A DGV QT + G+P I + Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 506 NKIDKDTANPDNV--------------KTELSQY-------NVMPEEWG----GDNMFV- 539 NKID++ + V K ++ Y E+W G++ + Sbjct: 128 NKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLE 187 Query: 540 ------------------------------HISAKQGTNIDGLLEAILLQAEVLELKAVK 569 H SAK ID L+E I + Sbjct: 188 KYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVIT--NKFYSSTHRG 245 Query: 570 QGMASGVVIESRLDKGRGPVATVLVQSGTLRKGDIVL-CGQEYGRVRAMRDEVGNEVEEA 628 Q G V + + R +A + + SG L D V +E ++ M + E+ + Sbjct: 246 QSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSINGELCKI 305 Query: 629 GPSIPVEILGLSG 641 + EI+ L Sbjct: 306 DKAYSGEIVILQN 318
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 1e-19 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 8/144 (5%) Query: 2 MELIDVLIVEDETSIADVHSFYLKQTARFR--PVGVAQSINEARNMVRILKPKLIFLDNY 59 M +L+ +D+ +I V L Q V + + + L+ D Sbjct: 1 MTGATILVADDDAAIRTV----LNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVV 56 Query: 60 LPDGRGIEFLKELT-HQPQAPDVIFITAASDMETVREAVRCGVFDYLLKPIAYDRVQNSL 118 +PD + L + +P P V+ ++A + T +A G +DYL KP + + Sbjct: 57 MPDENAFDLLPRIKKARPDLP-VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 119 ERYLKYISSLRANDSVNQRHVDEL 142 R L + + + L Sbjct: 116 GRALAEPKRRPSKLEDDSQDGMPL 139
>PF06580#Sensor histidine kinase Length = 349 Score = 37.2 bits (86), Expect = 1e-04 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 17/100 (17%) Query: 451 LLDNAFEATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFLKGVSSKNQE 510 L++N + + I L T + + +EV + G +E Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-------------SLALKNTKE 309 Query: 511 GHGIGLYLVHQFVTQAHG---SILIDSAEPQGTIFSIFIP 547 G GL V + + +G I + + + + IP Sbjct: 310 STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM-VLIP 348
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 46.0 bits (109), Expect = 3e-08 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 160 NPFTLGHQYLIEQACEQCDWVHLFVVKAENK--DFSYADRMAMIKAGSKHLLNLTIHSGS 217 +P T GH +IE+ C D V++ V++ NK FS +R+ I HL N + S Sbjct: 10 DPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLPNAQVDSFE 69 Query: 218 DYIISRA 224 ++ A Sbjct: 70 GLTVNYA 76
>PF05946#Toxin-coregulated pilus subunit TcpA Length = 199 Score = 312 bits (801), Expect = e-111 Identities = 161/199 (80%), Positives = 178/199 (89%) Query: 26 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT 85 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+Q+A+TQTYR LGNYPAT Sbjct: 1 MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNYPAT 60 Query: 86 ANANAATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC 145 A+A AA++L +GLVSLGK+S+DEAKNPF GT M IFSFPRN+AANKAFAI+V GLTQAQC Sbjct: 61 ADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQC 120 Query: 146 KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT 205 KTL+TSVGDMFP+I +K G A+ADLGDFE S A A TG GVIKSIAP S NL+LTNIT Sbjct: 121 KTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNIT 180 Query: 206 HVEKLCTGTAPFTVAFGNS 224 HVEKLC GTAPF VAFGNS Sbjct: 181 HVEKLCKGTAPFGVAFGNS 199
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 29.0 bits (65), Expect = 0.033 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 198 FESNVISYEEFIENPSA--RENFLLKATKDRTLALAVSLAQTGEIA 241 F IS +E +E + RE F+L+ T++ L L LA TG + Sbjct: 116 FSEEKISMQEALEKGAQPLRE-FMLRQTREADLGLFARLANTGPLQ 160
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 41.4 bits (97), Expect = 8e-06 Identities = 48/271 (17%), Positives = 91/271 (33%), Gaps = 36/271 (13%) Query: 211 SASLGETGKFTIFEDYSLVTVKARPDKFLLLHTFFDKLINESKMQIAVDYRVVSLSEERL 270 A+L + + + V A PD L +L + + Q+ V+ + + + Sbjct: 303 VAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQL-DIRRPQVLVEAIIAEVQDADG 361 Query: 271 NQLAAKFGIENAGKYSITSDMV--------------DAISLSQVGGGL----GASYRSAS 312 L ++ +NAG T+ + D S + L G + Sbjct: 362 LNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQ 421 Query: 313 ARLDAVVNELSQE----VMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTN--TDEET 366 ++ LS ++ + + N NV ++ +TT N E Sbjct: 422 GNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVER 481 Query: 367 RTVKVSDLVTGFSMMVMPKILDDGRI--QISSGFSRKQLVSIGTAQGITLPTVDENESMN 424 +TV G + V P+I + + +I S + T+ + T + N Sbjct: 482 KTV-------GIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDL-GATFNTRTVNN 533 Query: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454 V + GE V + L + ++ V LLG Sbjct: 534 AVLVGSGETVVVGGLLDKSVSDTADKVPLLG 564
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 66.0 bits (161), Expect = 4e-14 Identities = 58/325 (17%), Positives = 130/325 (40%), Gaps = 15/325 (4%) Query: 16 LVDLLNDNIPLYDALNKIQNEGVGIYDKNFIKS-IELIKDRMKSNSSLTDAL---TGLIP 71 L L+ ++PL +AL+ + + +K + + ++ ++ SL DA+ G Sbjct: 77 LATLVAASMPLEEALDAVAKQS----EKPHLSQLMAAVRSKVMEGHSLADAMKCFPGSFE 132 Query: 72 DKEVLMINVAENSGKISSGIAAIRKNIIDADEIKSKAISSMITPSVMLIVTMVVIAGYSV 131 M+ E SG + + + + +++S+ +MI P V+ +V + V++ Sbjct: 133 RLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVAIAVVSILLS 192 Query: 132 KVFPTFESVLPVSR--WPGVTQALYNLGFSLYE-GLWIKVLIFVAIFITILVFMSKNITG 188 V P + P T+ L + ++ G W+ + + ++ + Sbjct: 193 VVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRVMLRQEKRRV 252 Query: 189 NFRDGFLDKLPPFNFVKHIAAT-EFLANMSMLLDSRVPFKEGLDIV-DHKTTRWLSSHLQ 246 +F L LP + T + +S+L S VP + + I D + + L Sbjct: 253 SF-HRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMSNDYARHRLS 311 Query: 247 RMKANMQEGLDYKQALDTNLLDKKMLLTM-AVYSELPNFSDVMQKLAIEANINLHKKIAT 305 ++EG+ +AL+ L M+ M A ++++ A + ++ Sbjct: 312 LATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQDREFSSQMTL 371 Query: 306 LAGVMKNISLITLALSVIWIFGAIF 330 G+ + + ++++A V++I AI Sbjct: 372 ALGLFEPLLVVSMAAVVLFIVLAIL 396
>PF06340#Vibrio cholerae toxin co-regulated pilus biosynthesis protein F (TcpF) Length = 338 Score = 568 bits (1466), Expect = 0.0 Identities = 335/338 (99%), Positives = 335/338 (99%) Query: 1 MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS 60 MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS Sbjct: 1 MRYKKTLMLSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMS 60 Query: 61 RDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL 120 RDYLENCVKVSFPTSQDMFYDAY STESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL Sbjct: 61 RDYLENCVKVSFPTSQDMFYDAYSSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYL 120 Query: 121 AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT 180 AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT Sbjct: 121 AQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNT 180 Query: 181 PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK 240 PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK Sbjct: 181 PVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVSELSK 240 Query: 241 HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSGNLTGKKLYNVSTNDMHNGY 300 HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPS NLTGKKLYNVSTNDM NGY Sbjct: 241 HGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSDNLTGKKLYNVSTNDMRNGY 300 Query: 301 KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK 338 KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK Sbjct: 301 KWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK 338
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 227 bits (581), Expect = 1e-76 Identities = 77/268 (28%), Positives = 130/268 (48%), Gaps = 22/268 (8%) Query: 1 MEYVYLILFSIVSLILGSFSNVVIYRLPRKILLKNHFF------------------YDID 42 + ++Y L + SL++GSF NVVI+RLP I+L+ + Y++ Sbjct: 11 LPWLYFSLVFLFSLMIGSFLNVVIHRLP--IMLEREWQAEYRSYFNPDDEGVDEPPYNLM 68 Query: 43 SNRSMCPKCGNKISWYDNVPLLSYLLLHGKCRHCDEKISLSYFIVELSFFIIAFPIYWLS 102 RS CP C + I+ +N+PLLS+L L G+CR C IS Y +VEL +++ + Sbjct: 69 VPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAVAMTL 128 Query: 103 TDWVDSFVLLGLYFILFNLFVIDFKSMLLPNLLTYPIFMLAFIYVQQNPALTVESSIIGG 162 + L L ++L L ID MLLP+ LT P+ ++ +++ ++IG Sbjct: 129 APGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGA 188 Query: 163 FAAFIISYVSNFIVRLFKRIDVMGGGDIKLYTAIGTLIGVEFVPYLFLLSSIIAFIHWFF 222 A +++ + + +L + MG GD KL A+G +G + +P + LLSS++ Sbjct: 189 MAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIG 248 Query: 223 ARVSCRYCL--YIPLGPSIIISFVIVFF 248 + + IP GP + I+ I Sbjct: 249 LILLRNHHQSKPIPFGPYLAIAGWIALL 276
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 51.1 bits (122), Expect = 7e-10 Identities = 49/231 (21%), Positives = 80/231 (34%), Gaps = 56/231 (24%) Query: 1 MQKTLSAI---FLFTTLSANAAP-----YIGLELGIGTANHSFETNYQSDAVSLNPNMED 52 M+KT AI A AAP Y G +LG + +T + ++ + N Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLG---WSQYHDTGFINNNGPTHEN--Q 55 Query: 53 MFLGGLIGYKFNDNFSFEINYSSYKLEDQYSKFIGIESLNNQQYRKEHEWSSEIEAKQLA 112 + G GY+ N FE+ Y D + S+ N Y + + QL Sbjct: 56 LGAGAFGGYQVNPYVGFEMGY------DWLGRMPYKGSVENGAY--------KAQGVQLT 101 Query: 113 LISVYSYPIHQQLKTNIKVGVTHTQYEAYSGKYEELELLLNDDIEIRKALLETGLKKNRF 172 YPI L ++G + + S Y + N D Sbjct: 102 AKL--GYPITDDLDIYTRLGGMVWRADTKSNVYGK-----NHD--------------TGV 140 Query: 173 GALFSLGLDYNLIPELSVGTELRYQ---FDKYN-----DVLSISLNSKYYF 215 +F+ G++Y + PE++ E ++ D + D +SL Y F Sbjct: 141 SPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRF 191
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 28.6 bits (64), Expect = 0.046 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Query: 4 KVSVIGL-GYIGLPTAAVLASRGLDVVGVD 32 K V G G+IG + L G VVG+D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGID 31
>PF06917#Periplasmic pectate lyase Length = 555 Score = 29.5 bits (66), Expect = 0.029 Identities = 9/33 (27%), Positives = 15/33 (45%) Query: 79 LFILGLIEEYQVTKDPALLTEAEQLAQWLVTQR 111 +L L+E + + P L T A Q+ L + Sbjct: 448 YLLLALVELAEHCQCPTLFTLAWQIGDDLFKRH 480
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 762 bits (1969), Expect = 0.0 Identities = 287/568 (50%), Positives = 408/568 (71%), Gaps = 2/568 (0%) Query: 1 MISGILASPGIAIGKALLLQEDEIVLNTNTISDDQVEAEVERFYTARDKSSAQLEVIKQK 60 I+GI AS G+AI KA + E + + +I+D V E+E+ A +KS +L IK + Sbjct: 4 KITGIAASSGVAIAKAFIHLEPNVDIEKTSITD--VSTEIEKLTAALEKSKEELRAIKDQ 61 Query: 61 ALETFGEEKEAIFEGHIMLLEDEELEEEILALIKKEKMSADNAIHTVIEEQATALESLDD 120 + G +K IF H+++L+D EL + I I+ E+M+A+ A+ V + + ES+D+ Sbjct: 62 TEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDN 121 Query: 121 EYLKERATDIRDIGTRFVKNALGMHIVSLSEIDQEVVLVAYDLTPSETAQINLNYVLGFA 180 EY+KERA DIRD+ R + + +G+ SL+ I +E V++A DLTPS+TAQ+N +V GFA Sbjct: 122 EYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFA 181 Query: 181 CDIGGRTSHTSIMARSLELPAIVGTNDITKKVKNGDTLILDAMNNKIIVNPTQAQIEEAK 240 DIGGRTSH++IM+RSLE+PA+VGT ++T+K+++GD +I+D + +IVNPT+ +++ + Sbjct: 182 TDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYE 241 Query: 241 AVKAAFLAEKEELAKLKDLPAETLDGHRVEVCGNIGTVKDCDGIIRNGGEGVGLYRTEFL 300 +AAF +K+E AKL P+ T DG VE+ NIGT KD DG++ NGGEG+GLYRTEFL Sbjct: 242 EKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFL 301 Query: 301 FMDRDALPTEEEQYQAYKEVAEAMNGQAVIIRTMDIGGDKDLPYMDLPKEMNPFLGWRAV 360 +MDRD LPTEEEQ++AYKEV + M+G+ V+IRT+DIGGDK+L Y+ LPKE+NPFLG+RA+ Sbjct: 302 YMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAI 361 Query: 361 RISLDRREILRDQLRGILRASAHGKLRVMFPMIISVEEIRELKNAIEEYKAELRTEGHAF 420 R+ L++++I R QLR +LRAS +G L+VMFPMI ++EE+R+ K ++E K +L +EG Sbjct: 362 RLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDV 421 Query: 421 DENIEIGVMVETPAAAAIAHHLAKEVSFFSIGTNDLTQYTLAVDRGNEMISHLYNPLSPA 480 ++IE+G+MVE P+ A A+ AKEV FFSIGTNDL QYT+A DR NE +S+LY P PA Sbjct: 422 SDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPA 481 Query: 481 VLTVIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSGISIPKVKKVIRNA 540 +L ++ VI A+H+EGKW GMCGE+AGDE A LLLG+GLDEFSMS SI + + Sbjct: 482 ILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKL 541 Query: 541 NYAEIKAMAEEALALPTAAEIEACVDKF 568 + E+K A++AL L TA E+E V K Sbjct: 542 SKEELKPFAQKALMLDTAEEVEQLVKKT 569
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.0 bits (65), Expect = 0.018 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%) Query: 208 FGMLVAFFTS--IPIVNLFIVPVAVCGA-TAMWVMEFKI 243 F L A + S IP+ + +VP+ + G A + K Sbjct: 884 FLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKN 922
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 31.9 bits (72), Expect = 0.002 Identities = 11/63 (17%), Positives = 23/63 (36%) Query: 92 ELDEEEDEEARIPVQPQSQPQPRKVQPQVEMPRVAPNVPMAKVQPEVVTEIEVQEPQEEK 151 D E + + P +P +P+P + K +P+ + + ++ K Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 111 Query: 152 LDV 154 DV Sbjct: 112 RDV 114
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 58.7 bits (142), Expect = 8e-12 Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 5/143 (3%) Query: 50 YQEDSNGYDYENESRIGFRASKDMFDNVNVFMQIESGYVGEDGKGSTLGARDTFLGLQGD 109 ++ + S+IGF+ +D+ + + Q+E G S G R +F+GL+G Sbjct: 45 ASVETGTGIVDLGSKIGFKGQEDLGNGLKAIWQVEQK-ASIAGTDSGWGNRQSFIGLKGG 103 Query: 110 WGKVRFGRMLTPLYEIVDWPYSNPGLGRVFDWGGDVAGHYDRKGDIARYDSPAFGGLTFN 169 +GK+R GR+ + L D NP + G + + + RYDSP F GL+ + Sbjct: 104 FGKLRVGRLNSVLK---DTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGS 160 Query: 170 IS-AGRGDVGTKSSNHFGAAAHY 191 + A + G +S + A +Y Sbjct: 161 VQYALNDNAGRHNSESYHAGFNY 183
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.1 bits (106), Expect = 3e-06 Identities = 50/315 (15%), Positives = 95/315 (30%), Gaps = 29/315 (9%) Query: 867 DLELPEENDEPQLAEVTPSSAFDEQQVETEIEP-ESEPLAAEASNDESDLTALNELDLPE 925 DL PE Q + T + + Q + P +E +A + E Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 926 YTEEDVLADVQLEPAAESEVEPDLELVNEPVTEEAFTELDELDLPEYTEEDALADAQLEP 985 E+ + + E + + N V +EA + + + ++ Sbjct: 1039 TVAENSKQESKTVEKNEQDAT-ETTAQNREVAKEAKSNV----------KANTQTNEVAQ 1087 Query: 986 VAESEVEPELDLASEPAEEEAFTELNKLDLPEYTEEDALADAQLESATESEVESELELVS 1045 E + E A E E K++ + E + + + E ++ + Sbjct: 1088 SGSETKETQTTETKETATVEK-EEKAKVETEKTQEV---PKVTSQVSPKQEQSETVQPQA 1143 Query: 1046 EPAAEEAFTELDELDLPEYTEEDALADSQLEPAAESEVEPELELVSEPVTEEAFTELDEL 1105 EPA E T + E + +PA E+ E + V+E T + E Sbjct: 1144 EPARENDPTVN----IKEPQSQTNTTADTEQPAKETSSNVE-QPVTESTTVNTGNSVVEN 1198 Query: 1106 DLPEYTEEDALADAQLEPAVESEVEPELELASEPAEEEASTE-------LNELDLPEYTE 1158 T E + + + + S P E +T + DL Sbjct: 1199 PENT-TPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNT 1257 Query: 1159 EDALADAQLEPAAES 1173 L+DA+ + + Sbjct: 1258 NAVLSDARAKAQFVA 1272 Score = 40.4 bits (94), Expect = 7e-05 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 15/138 (10%) Query: 145 NSTQDAVNIMASHQAKLNQTPDTPVRPVAPPRPAPVATPKVEAVAQTPPQVTPTTAPQEK 204 N+ Q V + S+ ++ + + PV P AP P+ E VA+ Q + T E+ Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT----ETVAENSKQESKTVEKNEQ 1056 Query: 205 APTELKTPAKPSQSTDAEVMALEEKNHTLRLMLSQVQSEVSTLKEELGDENRIRSEVERL 264 TE A+ K +T +EV+ E + ++ Sbjct: 1057 DATE----TTAQNREVAKEAKSNVKANT-------QTNEVAQSGSETKETQTTETKETAT 1105 Query: 265 LEEERRKAEEASRLAPSA 282 +E+E + E + Sbjct: 1106 VEKEEKAKVETEKTQEVP 1123 Score = 35.0 bits (80), Expect = 0.003 Identities = 44/239 (18%), Positives = 77/239 (32%), Gaps = 37/239 (15%) Query: 812 AEDDLPEQTTATNETADELLADLAAQPQSNTVDTSDDALAPDGLSQSVEEPLTLND---- 867 E D E T E A E +++ A Q+N V S + + + +E T+ Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG-SETKETQTTETKETATVEKEEKA 1112 Query: 868 -LELPEENDEPQLAEVTPSSAFDEQQVETEIEPESEPLAAEASNDESDLTALNELDLPEY 926 +E + + P++ + V+ + EP E + E Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN--------------IKEP 1158 Query: 927 TEEDVLADVQLEPAAESEVEPDLELVNEPVTEEAFTELDELDLPEYTEEDALADAQLEPV 986 + +PA E+ + +PVTE + E E A Q Sbjct: 1159 QSQTNTTADTEQPAKETSSNVE-----QPVTESTTVNTGN-SVVENPENTTPATTQPTVN 1212 Query: 987 AESEVEPE----LDLASEPAEEEAFTELNKLDLPEYTEEDALADAQLESATESEVESEL 1041 +ES +P+ + S P E T + + +A L S + V S+ Sbjct: 1213 SESSNKPKNRHRRSVRSVPHNVEPATTSSN-------DRSTVALCDLTSTNTNAVLSDA 1264
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 8e-05 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 4/77 (5%) Query: 369 IEKHAKAEKVTVLLQQMGDMLQLMVRDDGVGFSSKEALQKRGIGLRNMRERVEFIGGE-- 426 I + + K+ + + + L V + G K + G GL+N+RER++ + G Sbjct: 272 IAQLPQGGKILLKGTKDNGTVTLEVENTGSLAL-KNTKESTGTGLQNVRERLQMLYGTEA 330 Query: 427 -FELSSEPQLGTEITVL 442 +LS + + ++ Sbjct: 331 QIKLSEKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.1 bits (169), Expect = 5e-16 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 3/120 (2%) Query: 5 MDKPIRVVMVDDHQVVLDGFIARLEQEPEIEVVATASNGLEALELVKLHQPDVVLMDVSM 64 M +++ DD + L + V SN + D+V+ DV M Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYD--VRITSNAATLWRWIAAGDGDLVVTDVVM 57 Query: 65 PIMNGIEATRLIKEEVPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKEISALKMVQAIKT 124 P N + IK+ P VL+++ + ++ + GA Y+ K +++ I Sbjct: 58 PDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 58.4 bits (141), Expect = 6e-13 Identities = 47/192 (24%), Positives = 69/192 (35%), Gaps = 34/192 (17%) Query: 1 MKKTLLAL--ALLGASSTAMA----DSWIYGGASVGQSDY------EGKHGT-----AYS 43 MKKT +A+ AL G ++ A A ++W Y GA +G S Y T Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTW-YTGAKLGWSQYHDTGFINNNGPTHENQLGAG 59 Query: 44 VHAGTGILPFIGLEAGYVNHGDFEINATQE---LSASSLYFAVKPSMDFGP-LHVYAKGG 99 G + P++G E GY G + E A + K L +Y + G Sbjct: 60 AFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLG 119 Query: 100 LHSWDKD----INGGKIDDGIDVMYGIGAEYFIIGPFSVGASYM------NYTMDST--D 147 W D + G D G+ ++ G EY I + Y + T D Sbjct: 120 GMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPD 179 Query: 148 VGTLSFNATFHF 159 G LS ++ F Sbjct: 180 NGMLSLGVSYRF 191
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 49.4 bits (118), Expect = 1e-08 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 19/105 (18%) Query: 152 AVIGRPVNFHGRGGEDSNQQAENILRRAATRAGFRHLEFQFEPVAAGLEYEATLTEDKTV 211 ++ PV ++ +R +A AG R + EP+AA + ++E Sbjct: 110 VLVCVPVGA------TQVER--RAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGS 161 Query: 212 LVVDIGGGTTDCSLIQMGPSWRGKADRTQSLIAHTGQRVGGNDLD 256 +VVDIGGGTT+ ++I + ++ + R+GG+ D Sbjct: 162 MVVDIGGGTTEVAVISLN-----------GVVYSSSVRIGGDRFD 195
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 121 bits (304), Expect = 5e-32 Identities = 98/419 (23%), Positives = 169/419 (40%), Gaps = 21/419 (5%) Query: 27 LGSLEKSIVTTPLALIGQDLSA-GTALTWVITAYLLAATAVLPVYGKLSDLFGRVRMLNI 85 L + ++ L I D + + WV TA++L + VYGKLSD G R+L Sbjct: 25 FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLF 84 Query: 86 SIGIFIVGSAMCTFA-VDLPTLIGARVVQGIGGGGLIALAFTVIADSIPAREVGKYQGYI 144 I I GS + LI AR +QG G AL V+A IP GK G I Sbjct: 85 GIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLI 144 Query: 145 SAVYAVSSVAGPLLGGYFADHLSWRWVFGINLPLGMVALYMVNRHLRHLNQKRHSRFDWL 204 ++ A+ GP +GG A ++ W ++ +P+ + L + FD Sbjct: 145 GSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPMITIITVPFLMKLLKKEVRIKGHFDIK 202 Query: 205 GAGLLMLTTTLLLLQLSSHSFLPAGWGAFALLLCLVLLILVERQ--VSDPILPARLARLP 262 G L+ + +L +S+S F ++ L LI V+ V+DP + L + Sbjct: 203 GIILMSVGIVFFMLFTTSYSIS------FLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNI 256 Query: 263 SYLTAIGLIMASQMLMFALLVYMPLQLQWQKGFSPSQSGT-VMVIFMFSITTGAYLGGKW 321 ++ + + + +P ++ S ++ G+ ++ S+ Y+GG Sbjct: 257 PFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGIL 316 Query: 322 VARSGRYK------ALVVSGFLLAAVAIWQIHYDLWVHLSLGIGGLGLGFTLPSLNVVVQ 375 V R G + FL A+ + ++ + + GL FT ++ +V Sbjct: 317 VDRRGPLYVLNIGVTFLSVSFLTASFLLETTS--WFMTIIIVFVLGGLSFTKTVISTIVS 374 Query: 376 SVLPARDRGIGMSLFNFGRELGGALGVAFCSALFYLRVPQSVTVSEHGSQASSVTPDVL 434 S L ++ G GMSL NF L G+A L + + + Q++ + ++L Sbjct: 375 SSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSNLL 433
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 30.3 bits (68), Expect = 0.019 Identities = 9/29 (31%), Positives = 16/29 (55%) Query: 120 QHDIVWHEFPYAAVIRGAQTRKNWDEHWQ 148 Q++I+W E Y + T++ WD +W Sbjct: 479 QYEILWDEINYDDKGKEVITKRRWDNNWY 507
>PF06580#Sensor histidine kinase Length = 349 Score = 32.9 bits (75), Expect = 0.005 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 8/48 (16%) Query: 490 LIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMSDDGKG 537 L+ N + HGI GKI L + +V +++ + G Sbjct: 263 LVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEVENTGSL 302
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.3 bits (167), Expect = 1e-16 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 2/113 (1%) Query: 4 KVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALERALEMPVDLFLVDINMPKMDGFT 63 ++V DD + +R L G + SN DL + D+ MP + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQQTV 116 L+ I+ +P +++S ++ + GA Y+ KP + EL + Sbjct: 65 LLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.8 bits (176), Expect = 7e-16 Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 4/104 (3%) Query: 2 KILVVDDSALMRTTISDILQNIPNAEIKTARDGMDAIDKVMKWQPDVMTLDINMPNMDGL 61 ILV DD A +RT ++ L + +++ + + D++ D+ MP+ + Sbjct: 5 TILVADDDAAIRTVLNQAL-SRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 TCLTQIMVERP-LPIVMLSSLTHEGAITTLEALYLGAVDFVAKP 104 L +I RP LP++++S+ +T ++A GA D++ KP Sbjct: 64 DLLPRIKKARPDLPVLVMSA--QNTFMTAIKASEKGAYDYLPKP 105
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.0 bits (67), Expect = 0.027 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 7/96 (7%) Query: 113 DPEMIKPTNTAGGKIDPTLITNTIHSDNQIIQVLNCHRLLDNSVEEELELSTQRFNHLSS 172 P ++ + T I + + I S+NQ Q + +E +T NH++ Sbjct: 60 APMVVTSSTTGDLSIPSSEL-ENIPSENQYFQSAIWSGFIKVKKSDEYTFATSADNHVTM 118 Query: 173 QSHFGDVIDEERDDDEDMRQLVCCMVDGQEYAFPLE 208 +D++ ++ + G+ Y ++ Sbjct: 119 W------VDDQEVINKASNSNKIRLEKGRLYQIKIQ 148
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 39.2 bits (91), Expect = 6e-05 Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 11/104 (10%) Query: 639 PALPGGLEPA-------VALAPPQTISYQALLQAEQANVPAVKVCPLAAQEATPAVNS-- 689 LP +P L PPQ + E P P +EA + Sbjct: 41 IELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPI--PEPPKEAPVVIEKPK 98 Query: 690 ITPPPPPPIAPPMAPPQPIMNPQPTANAQPNLGRSTKATPDFPT 733 P P P + P+ + P + A P + Sbjct: 99 PKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTA 142
>cloacin#Cloacin signature. Length = 551 Score = 30.1 bits (67), Expect = 0.010 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%) Query: 80 QNQEEAWQHKMD-----QALEKQREEWQAEAVQRDKYVAELEKQNLNLEQQLNEQKMALE 134 Q++E Q + D +A E+ E +AE Q ++ VA +++ Q N +K L+ Sbjct: 300 QDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELD 359 Query: 135 LAN 137 AN Sbjct: 360 AAN 362
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 28.2 bits (62), Expect = 0.048 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 9/109 (8%) Query: 1 MKNKLFASALCAAAL----FTTNAMAKDQELYFYNWSEYIP-----SEVLEDFTKETGIK 51 MK K A L +AL F+ +A+AK +E W +EV + F K+TGIK Sbjct: 1 MKIKTGARILALSALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIK 60 Query: 52 VIYSTYESNESMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSK 100 V + E + ++ G G D++ + + G+L EI K Sbjct: 61 VTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK 109
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 40.5 bits (94), Expect = 9e-06 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 34 SACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNETLYAKLK 93 + +SL S ++ V N+ YI+ +LE+ + + + TY SNE L Sbjct: 10 FSLFVSLSSILSSCGSTTFVLANFESYISPLLLER--VQEKHPLTFLTYPSNEKLINGFA 67 Query: 94 THNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLS 127 N Y + V STY V+++ + +L ID S+ + Sbjct: 68 --NNTYSVAVASTYAVSELIERDLLSPIDWSQFN 99
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 28.5 bits (63), Expect = 0.025 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Query: 134 VPEALVLTQAANESAWGTSRFAKE----ANNYFG 163 VP L+L QAA ES WG + +E + N FG Sbjct: 169 VPHHLILAQAALESGWGQRQIRRENGEPSYNLFG 202
>ENTEROTOXINB#Heat labile enterotoxin B chain signature. Length = 124 Score = 239 bits (612), Expect = 7e-86 Identities = 124/124 (100%), Positives = 124/124 (100%) Query: 1 MIKLKFGVFFTVLLSSAYAHGTPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAI 60 MIKLKFGVFFTVLLSSAYAHGTPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAI Sbjct: 1 MIKLKFGVFFTVLLSSAYAHGTPQNITDLCAEYHNTQIYTLNDKIFSYTESLAGKREMAI 60 Query: 61 ITFKNGAIFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAI 120 ITFKNGAIFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAI Sbjct: 61 ITFKNGAIFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAI 120 Query: 121 SMAN 124 SMAN Sbjct: 121 SMAN 124
>ENTEROTOXINA#Heat-labile enterotoxin A chain signature. Length = 258 Score = 471 bits (1214), Expect = e-173 Identities = 206/258 (79%), Positives = 232/258 (89%) Query: 1 MVKIIFVFFIFLSSFSYANDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLY 60 M I F+FFI L+S YAN D+LYRADSRPPDEIK+SGGLMPRG +EYFDRGTQMNINLY Sbjct: 1 MKNITFIFFILLASPLYANGDRLYRADSRPPDEIKRSGGLMPRGHNEYFDRGTQMNINLY 60 Query: 61 DHARGTQTGFVRHDDGYVSTSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLG 120 DHARGTQTGFVR+DDGYVSTS+SLRSAHL GQ+ILSG+STYYIYVIATAPNMFNVNDVLG Sbjct: 61 DHARGTQTGFVRYDDGYVSTSLSLRSAHLAGQSILSGYSTYYIYVIATAPNMFNVNDVLG 120 Query: 121 AYSPHPDEQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGY 180 YSPHP EQEVSALGGIPYSQIYGWYRV+FGV+DE+LHRNR YRDRYY NL+IAPA DGY Sbjct: 121 VYSPHPYEQEVSALGGIPYSQIYGWYRVNFGVIDERLHRNREYRDRYYRNLNIAPAEDGY 180 Query: 181 GLAGFPPEHRAWREEPWIHHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQI 240 LAGFPP+H+AWREEPWIHHAP GCGN+ R+ +TC+E+TQ+L +L EYQSKVKRQI Sbjct: 181 RLAGFPPDHQAWREEPWIHHAPQGCGNSSRTITGDTCNEETQNLSTIYLREYQSKVKRQI 240 Query: 241 FSGYQSDIDTHNRIKDEL 258 FS YQS++D +NRI+DEL Sbjct: 241 FSDYQSEVDIYNRIRDEL 258
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.050 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%) Query: 337 GFSFNIMRGDRIALIGPNGCGKSTLLKILLGD 368 G F+ + L G G GKSTL+ L+G Sbjct: 592 GCKFDYS----VVLEGTGGIGKSTLINTLVGL 619
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.011 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%) Query: 235 QTSWNPLVGM----QYQLNDSWYLLGEFGFGDRQS 265 TS N L + +Y ++ WYL + G+G QS Sbjct: 1352 ATSKNTLAQVNFYSKYYADNHWYLGIDLGYGKFQS 1386
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.7 bits (116), Expect = 2e-08 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 6/166 (3%) Query: 77 SGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAI 136 + + +I VKEG+ V+KG +L L + A+ Q L E R + + +I Sbjct: 104 NSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR---SI 160 Query: 137 SKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQ 196 +L ++ + V E + + I F ++K ++ ++ Sbjct: 161 ELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQ---KELNLDKKRAERL 217 Query: 197 DLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYST 242 + E RV S + + ++ AI + Y Sbjct: 218 TVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVE 263 Score = 35.6 bits (82), Expect = 3e-04 Identities = 28/196 (14%), Positives = 68/196 (34%), Gaps = 19/196 (9%) Query: 95 QLLASLDSRDAKTALEAAQLE--LKNTEQEYRRAKAIFEKTQAISKAELDKVTNRYDLAK 152 + + Q+E + + ++EY+ +F+ +L + T+ L Sbjct: 259 NKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL---DKLRQTTDNIGLLT 315 Query: 153 NRVEEAKRKLEYTQITAPFDGVISE-KTIENFAQVQANQVIMILQDLND-LEVAIEIPHR 210 + + + + + + I AP + + K V + +M++ +D LEV + ++ Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNK 375 Query: 211 VMLSGVRNTRAIAELSAIPNQQF---DLKLRTYSTQPSSDSQTYSVVL---------GFE 258 + AI ++ A P ++ K++ + D + V Sbjct: 376 DIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLST 435 Query: 259 DLKGFRVMPGMSAKVI 274 K + GM+ Sbjct: 436 GNKNIPLSSGMAVTAE 451
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 471 bits (1214), Expect = e-152 Identities = 244/1049 (23%), Positives = 445/1049 (42%), Gaps = 60/1049 (5%) Query: 3 IARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSDE 62 +A + + + WVL + ++ G ++ L+L + P + YPGA AQ V D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTDVIEGAVQALQELKEVKSVSMQ-GRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADAQ 121 VT VIE + + L + S S G +T+ + AQ QV +KL+ A Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQ-VQVQNKLQL----AT 115 Query: 122 RQLPPGA-GASIVNDDFSDVYALFYAV--TGEGFSDKQLQDYVD-TLRRELVLVPGVAKA 177 LP I + S Y + G + + DYV ++ L + GV Sbjct: 116 PLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDV 175 Query: 178 ATLAEQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDA------QQMRIPV 231 L Q A+ I + ++ + ++ L+ V+ L+ Q+ AG + QQ+ + Sbjct: 176 -QLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASI 234 Query: 232 IPKSNISSLADLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISN 291 I ++ + + + + V S+ +VVRL D+A + G E +++ R NG+ A G GI Sbjct: 235 IAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKL 293 Query: 292 VTGGNVVEMGDAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFV 351 TG N ++ A+KA+LAEL+ P GM + + V+ S+ + L A+ +VF+ Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 352 VLLLFMG-VRSGVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVT 410 V+ LF+ +R+ +I + + + GT ++ ++ +++ +++A+G+LVD+AIVV Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 411 DGVLVRFQQEPNADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFW 470 + V R E ++ + ++ + L+G +V F + G Sbjct: 414 ENV-ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSI 472 Query: 471 VILYSMFLSWVFAVTVTPMLCHDFLRVKAPTKEAKPSK-----------LVTGYKAVLQW 519 I+ +M LS + A+ +TP LC L+ + V Y + Sbjct: 473 TIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGK 532 Query: 520 VLSHRVVSCAMLLGTLVAAVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVAS 579 +L + + V +P F+PE + F+ + LP G+ RT++V+ Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 580 IEKDVTQKDGITNITSFIGGGGLRFMLTYSPEARNPSYGQL-LIDIDDYTKIAPLVGELQ 638 + D K+ N+ S G F S +A+N + L ++ + Sbjct: 593 VT-DYYLKNEKANVESVFTVNGFSF----SGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 639 NELDAKY---PDASIKVWKFM----LGRGGGKKIE-AGFKGPDSHVLRQLAEQ-AKAIMH 689 + + D + + LG G E G L Q Q Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 690 NDPNLIAVQDDWRQQVPVLQPVYSAQEAQRLGLTTQEISAAIAQTLNGRNVGVYREGNDL 749 + +L++V+ + + + ++AQ LG++ +I+ I+ L G V + + + Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 750 IPLMVRAPENERHHERAIENSEVFSAQAGRYIPVSQLVDSVDTVYQDALLRRINRMPTIL 809 L V+A R ++ V SA G +P S VY L R N +P++ Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSA-NGEMVPFSAFTT-SHWVYGSPRLERYNGLPSME 825 Query: 810 VQADPAPGVMTADAFNNVREKIEQI--ELPAGYELIWYGEYKASKDANEGLALSAPYGFA 867 +Q + APG + DA +E + +LPAG W G + + F Sbjct: 826 IQGEAAPGTSSGDA----MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFV 881 Query: 868 AMILAVVFMFNALRQPLVIWMTAPFAVVGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNA 927 + L + ++ + P+ + + P +VGV + F + ++G L+ IG+ KNA Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 928 IVLVDQA-DAEIRAGKEAYFAIIDAAVSRARPVLLGAFTTILGVAPLLVDP-----FFKS 981 I++V+ A D + GK A + A R RP+L+ + ILGV PL + + Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 982 MAVTIMFGLLFATILTLVVIPLFYAVLFR 1010 + + +M G++ AT+L + +P+F+ V+ R Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 30.3 bits (68), Expect = 0.007 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 15/78 (19%) Query: 98 STLTFASGKSSIPNDATIQQAVKDIGVVLHSAIQKKDRFQYLDTIFIEGHTDSDSIHYRG 157 S + F K+++ + Q A+ + L S + KD ++ + G+TD G Sbjct: 219 SDVLFNFNKATLKPEG--QAALDQLYSQL-SNLDPKDG-----SVVVLGYTDR-----IG 265 Query: 158 KG--NWGLSTDRAISVWN 173 N GLS RA SV + Sbjct: 266 SDAYNQGLSERRAQSVVD 283
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 32.4 bits (73), Expect = 0.008 Identities = 61/278 (21%), Positives = 106/278 (38%), Gaps = 37/278 (13%) Query: 420 SSMESTIKDLVENVSAQSQVLTDFVQNQVVQLTQTFSERDGMA--SQMEKERNDIFVNQT 477 S +E+++KD++ N Q +TD V N L Q S S++E+ D Sbjct: 765 SDLENSVKDVIIN-----QKVTDKVDN----LNQAVSVAKATGDFSRVEQALAD------ 809 Query: 478 QAMKAGTDELLAQVKAATESQQITTNSIIEQGKQLQNSIDSS-VSASARATESMQQSANE 536 +K + E LAQ ES S I Q ++N ++ + V E+ S N Sbjct: 810 --LKNFSKEQLAQQAQKNESLNARKKSEIYQ--SVKNGVNGTLVGNGLSQAEATTLSKNF 865 Query: 537 LRVAADSMNVFGSNIKDAGNKLSGAVTEAVNSTKDLAEQNHLG-------AVKVQALREQ 589 + + G+ + N L A + K + L A KV A ++ Sbjct: 866 SDIKKELNAKLGNFNNNNNNGLKNEPIYAKVNKKKAGQAASLEEPIYAQVAKKVNAKIDR 925 Query: 590 LLEDTSKFSAIADQINNMLISAEQ--SFSTLRTTQNEFLAEQKGNLNELTSEMKRNVKEL 647 L + S + L ++ S + ++N+ LA++ NLN+ SE K Sbjct: 926 LNQIASGLGVVGQAAGFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGN 985 Query: 648 TEQMAQLLEDYAEQANGQTAEHLKVWANSSTQYAESMN 685 EQ L+D + + +W S+ + S++ Sbjct: 986 LEQTIDKLKDSTKH------NPMNLWVESAKKVPASLS 1017
>PF03309#Bvg accessory factor Length = 271 Score = 28.2 bits (63), Expect = 0.034 Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 4/32 (12%) Query: 4 LAIDIGGTKIALAIV----EEGTIIQRYQIAT 31 LAID+ T + ++ + ++Q+++I T Sbjct: 3 LAIDVRNTHTVVGLISGSGDHAKVVQQWRIRT 34
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 103 bits (259), Expect = 3e-29 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 4/124 (3%) Query: 49 NAQGQLTEQELKEQALRENQTIYFAFDNATIASDYEAMLAAHAAYL--VKNPSLRVTIEG 106 A E++ + + F F+ AT+ + +A L + L + V + G Sbjct: 200 VAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLG 259 Query: 107 HADERGTPEYNIALGERRAQAVAKYLEALGVQAGQLSIVSYGEEKPLVLGQSEEAYAKNR 166 + D G+ YN L ERRAQ+V YL + G+ A ++S GE P V G + + K R Sbjct: 260 YTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNP-VTGNTCD-NVKQR 317 Query: 167 RAVL 170 A++ Sbjct: 318 AALI 321
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 65.1 bits (158), Expect = 1e-13 Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 6/197 (3%) Query: 72 AKKEQERLDKLRRESEQLEKNRQAEEERIRQLKEQQAKEAKAAREAEKLREQKEQERLAA 131 ++ + + ++ES+ +EKN Q E Q +E AKEAK+ +A + Q Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREV-AKEAKSNVKANTQTNEVAQSGSET 1092 Query: 132 EQKAREEKERAAKAEAERKVKEEAAKKAEQERVAKEAAAAKAEQQRIEREKEAKLAEEKA 191 ++ E + A E E K K E K E +V + + ++ + E AE Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSP-----KQEQSETVQPQAEPAR 1147 Query: 192 KREKEVAAKAEQERLAKEKAAKEAADKAKKEKERAAKAEAERKAQEAALNDIFGSLSEES 251 + + V K Q + ++ A + E+ + + + + + Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Query: 252 QQNNAARQQFVTSEVGR 268 Q + R Sbjct: 1208 QPTVNSESSNKPKNRHR 1224 Score = 63.9 bits (155), Expect = 4e-13 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 4/196 (2%) Query: 76 QERLDKLRRESEQLEKNRQAEEERIRQLKEQQAKEAKAAREAEKLREQKEQERLAAEQKA 135 ++R + + N QA+ + E+ A+ +A E AE Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 136 REEKE---RAAKAEAERKVKEEAAKKAEQERVAKEAAAAKAEQQRIEREKEAKLAEEKAK 192 +E K A E AK+A+ A A+ +E + +E A Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 193 REKEVAAKAEQERLAKEKAAKEAADKAKKEKERAAKAEAERKAQEAALNDIFGSLSEESQ 252 EKE AK E E+ + + K+E+ + +AE + +I S+ + Sbjct: 1106 VEKEEKAKVETEKTQEV-PKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNT 1164 Query: 253 QNNAARQQFVTSEVGR 268 + + TS Sbjct: 1165 TADTEQPAKETSSNVE 1180 Score = 58.2 bits (140), Expect = 3e-11 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 3/143 (2%) Query: 96 EEERIRQLKEQQAKEAKAAREAEKLREQKEQERLAAEQKAREEKERAAKAEAERKVKEEA 155 E E+ Q + +A+ E +A +A A + E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 156 AKKAEQERVAKEAAAAKAEQQRIEREKEAKLAEEKAKREKEVAAKAEQERLAKEKAAKEA 215 +K+ + E A + Q E KEAK + + EVA + + + KE Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 216 ADKAKKEKERAAKAEAERKAQEA 238 A K+EK AK E E+ + Sbjct: 1104 ATVEKEEK---AKVETEKTQEVP 1123 Score = 52.8 bits (126), Expect = 1e-09 Identities = 27/203 (13%), Positives = 64/203 (31%), Gaps = 4/203 (1%) Query: 38 SDPEPTGQMIEAVVIDPQLVRQQAQQIRSQREEAAKKEQERLDKLRRE-SEQLEKNRQAE 96 S+ E ++ EA V P E +K+E + ++K ++ +E +NR+ Sbjct: 1012 SNNEEIARVDEAPVPPPAPATPSETT--ETVAENSKQESKTVEKNEQDATETTAQNREVA 1069 Query: 97 EERIRQLKEQQAKEAKAAREAEKLREQKEQERLAAEQKAREEKERAAKAEAERKVKEEAA 156 +E +K + + A+ + +E + E +EEK + + + K + Sbjct: 1070 KEAKSNVKAN-TQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 157 KKAEQERVAKEAAAAKAEQQRIEREKEAKLAEEKAKREKEVAAKAEQERLAKEKAAKEAA 216 +QE+ A+ ++ + + E ++ + Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 217 DKAKKEKERAAKAEAERKAQEAA 239 + Q Sbjct: 1189 VNTGNSVVENPENTTPATTQPTV 1211 Score = 43.9 bits (103), Expect = 9e-07 Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 4/208 (1%) Query: 63 QIRSQREEAAKKEQERLDKLRRESEQLEKNRQAEEERIRQLKEQQAKEAKAAREAEKLRE 122 Q +E A +++E+ K+ E Q ++ ++ E +A+ ARE + Sbjct: 1096 QTTETKETATVEKEEK-AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 123 QKEQERLAAEQKAREEKERAAKAEAERKVKEEAAKKAEQERVAKEAAAAKAEQQRIEREK 182 KE + E+ + + E+ V E V A Q + Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSE 1214 Query: 183 EAKLAEEKAKRE-KEVAAKAEQERLAKEKAAKEAADKAKKEKERAAKAEAERKAQEAALN 241 + + + +R + V E + + A A ++A KAQ ALN Sbjct: 1215 SSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALN 1274 Query: 242 DIFGSLSEESQ--QNNAARQQFVTSEVG 267 SQ NN + S Sbjct: 1275 VGKAVSQHISQLEMNNEGQYNVWVSNTS 1302
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 27.3 bits (60), Expect = 0.028 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 37 FVTQGVDVELP-KTHSAKSAQDLAGDSDSSFIIVEIDKEG 75 F G + P H+A SA + G+ D F + ++ EG Sbjct: 98 FSGHGHEEHAPFDNHAADSASEEKGNVDEGFTVYRLNWEG 137
>SECA#SecA protein signature. Length = 901 Score = 52.2 bits (125), Expect = 9e-11 Identities = 17/21 (80%), Positives = 18/21 (85%) Query: 131 KQGRNDPCACGSGKKYKKCCG 151 K GRNDPC CGSGKKYK+C G Sbjct: 878 KVGRNDPCPCGSGKKYKQCHG 898
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 118 bits (297), Expect = 1e-38 Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 1/89 (1%) Query: 2 TKSELIERLCAEQTHLSAKEIEDAVKNILEHMASTLEAGERIEIRGFGSFSLHYREPRVG 61 K +LI ++ AE T L+ K+ AV + ++S L GE++++ GFG+F + R R G Sbjct: 3 NKQDLIAKV-AEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRERV 90 RNP+TG++++++ VP FK GK L++ V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 120 bits (303), Expect = 1e-39 Identities = 49/87 (56%), Positives = 63/87 (72%) Query: 2 NKTQLVEQIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTGR 61 NK L+ ++A +++K + A+DA AVS L G++V L+GFG F VR RAAR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGEEIKIAEAKVPSFKAGKALKDA 88 NP+TGEEIKI +KVP+FKAGKALKDA Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDA 89
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 81.2 bits (200), Expect = 6e-20 Identities = 82/298 (27%), Positives = 131/298 (43%), Gaps = 36/298 (12%) Query: 31 MRKSLLALS-LLAATSAPVLAADYSDGDIHKNDYKWMQFNLMGAFDEL--PGKSSHDYLE 87 M+K+LLA ++A ++ A +D + +D+ N++G++ P + YLE Sbjct: 1 MKKTLLAAGAVVALSTTFAAGAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLE 60 Query: 88 MEFGGRSGIFDLYGYVDVFNLATNKSSDK----VGDPKIFMKFAPRMSLDAFTGVDMSFG 143 E + FD YGY+D S+ K G P +FM+ PR S+D T D+SFG Sbjct: 61 YEAFAKKDWFDFYGYIDAPVFFGGNSTAKGIWNKGSP-LFMEIEPRFSIDKLTNTDLSFG 119 Query: 144 PVQEVYVASLFEWDGTDFKTNAFSVNNQKIGLGSDVMVPWFGKVGLNLYGTYD------G 197 P +E Y A+ + +D + S +GLG+D+ + LN+Y Y Sbjct: 120 PFKEWYFANNYIYDMGRNDSQEQS--TWYMGLGTDIDTGLPMSLSLNVYAKYQWQNYGAS 177 Query: 198 NRKDWNGFQISTNWFKPFYFFENGSFISYQGYIDYQFG--LKDEYSTASNGGA------- 248 N +W+G++ +F P GS +SY G+ ++ +G L D+ NG Sbjct: 178 NENEWDGYRFKVKYFVPLTDLWGGS-LSYIGFTNFDWGSDLGDDNFYDLNGKHARTSNSI 236 Query: 249 ------MFNGIYWHSDRFAVGYGLKG-YKDVYGIKDTDG---FKSTGFGHYVAVTYKF 296 N +WH A + G + D + DG +STG+G Y V Y F Sbjct: 237 ASSHILALNYAHWHYSIVARYFHNGGQWADDAKLNFGDGPFSVRSTGWGGYFVVGYNF 294
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 37.9 bits (88), Expect = 6e-05 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 35 GKTMVVMLGGEAIAD-----------KNFPNIISDIALLHSLGVKVVLVHGARPQINQIL 83 GK +V+ LGG A+ N IA + + G +VV+ HG PQ+ +L Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61 Query: 84 EKNQ 87 Sbjct: 62 LHMD 65
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 31.5 bits (71), Expect = 0.003 Identities = 29/170 (17%), Positives = 60/170 (35%), Gaps = 17/170 (10%) Query: 2 LVIRLIACTFLFITPSLLAKPFP------AERIISLAPHATEIAYAAGLGDKLVAVSEYS 55 L+ R T + ++P L RI++L E+ A LG V++ Sbjct: 6 LISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLA--LGIVPYGVADTI 63 Query: 56 DY------PPQALELERVANHQTINIEKILTLKPDLIIAWPAGNP-PRELAKL-RQLGFT 107 +Y PP + V N+E + +KP ++ P P LA++ GF Sbjct: 64 NYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFN 123 Query: 108 IYDSQTKTLDEIADNIEALSHYSANPEVGQKAAHDFRQRLQDLRTQYASN 157 D + L ++ ++ + + ++ ++ ++ Sbjct: 124 FSDG-KQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKR 172
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.2 bits (68), Expect = 0.032 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 32 DKVAEEQSLITVEGDKASMEVPASQAGIVKEIKVVAGDKVSTGSLIMVFEAEGAAAA 88 + VA +T G S E+ + IVKEI V G+ V G +++ A GA A Sbjct: 81 EIVATANGKLTHSGR--SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEAD 135
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 59.9 bits (145), Expect = 3e-14 Identities = 22/77 (28%), Positives = 42/77 (54%) Query: 19 KNKQQKGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSAIGVGLANITALKTNIEDYIAT 78 +Q+GFTL+E+M+V+ +IGVLA++ +P +K+ +++I AL+ ++ Y Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 79 EGSFPATTAGTAAGFTR 95 +P T G + Sbjct: 63 NHHYPTTNQGLESLVEA 79
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 447 bits (1151), Expect = e-158 Identities = 114/408 (27%), Positives = 212/408 (51%), Gaps = 11/408 (2%) Query: 9 LKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHI--------QIKKLKKGSVSLLAR 60 + Y ++ +++ GKK G A S + R L+++ + + + K GS L R Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 LTHRVKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPL 120 R+ + D+ +LTRQLAT++ +P+ +AL V K + ++A + V G L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 121 SKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVV 180 + AM+ F+ LY +V GE SG+L V RLA Y E+ +Q+R+++ +A+IYP ++ Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 181 LVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFG 240 +VA+ V ++L++V+P+ F LP T+ ++ +S V+ + W +A+ A Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 241 LK-ALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTA 299 + LR+ R+ R L P+IG + + A+++RTL+ A+ +P+L +++ + Sbjct: 241 FRVMLRQEKR--RVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISG 298 Query: 300 KTSGNVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVA 359 N + ++ G+ ++ A+ T FP M+ M+ GE SG+LD ML + A Sbjct: 299 DVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAA 358 Query: 360 TIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407 + E + + + EPL++V + VV +V+A+ PI L +++ Sbjct: 359 DNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 359 bits (922), Expect = e-127 Identities = 172/287 (59%), Positives = 208/287 (72%), Gaps = 1/287 (0%) Query: 1 MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGK 60 +EL + PWL+ L LF L++GSFLNVVI+RLP ++EREW+AE + F E Sbjct: 5 LELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPP 64 Query: 61 LTLSLPRSTCPHCQTPIRVIDNIPLLSWLALRGQCSHCKAPISARYPLIELLTALMSLVI 120 L +PRS CPHC PI ++NIPLLSWL LRG+C C+APISARYPL+ELLTAL+S+ + Sbjct: 65 YNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAV 124 Query: 121 ATHFPFGVFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSD 180 A G +A L ++VL+A TFID D +LLPDQLTLPLLWGG+ LLG VSL D Sbjct: 125 AMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLG-GFVSLGD 183 Query: 181 AVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV 240 AVIGAMAGYL LWS+YW FKLLTGKEGMGYGDFKLLAALGAWLGWQ LP+++LLSS+VG Sbjct: 184 AVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGA 243 Query: 241 IFGLIQLRQQKKGIDMAFPFGPYLAIAGWFALLWGDKVIDWYFTTWV 287 G+ + + PFGPYLAIAGW ALLWGD + WY T ++ Sbjct: 244 FMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLTNFL 290
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 32.8 bits (75), Expect = 0.002 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 10/114 (8%) Query: 336 QTVALVIRGLALGHIGDSNKRELLMKEAAIGLLNGITWALIIGAIVVVWKGE----WMLG 391 Q LV + G + ++ + +I + + G VV+W GE +G Sbjct: 128 QGTGLVATARSAPLFGRCSVGGQIVPDQSIFTTITMVICMTAGTCVVMWLGELITDRGIG 187 Query: 392 GIISAAMMTNLIVAGIAGVSIPILLKKMNIDPALAGGMALTTVTDVIGLSVFLG 445 +S L+ IA + P L + LAGG +GL + Sbjct: 188 NGMSI-----LMFISIAA-TFPSALWAIKKQGTLAGGWIEFGTVIAVGLIMVAL 235
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.003 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Query: 7 EKLEAKIQTAVDTIALLQMEVEEL--KEEKQQLQNEAQELREAREALEQRAQQVQQEHAA 64 K K T + +A E +E E K+ E +E + Q +V + + Sbjct: 1072 AKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSP 1131 Query: 65 WQERIRSLLGKME 77 QE+ ++ + E Sbjct: 1132 KQEQSETVQPQAE 1144
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 95.3 bits (237), Expect = 8e-25 Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 2/136 (1%) Query: 2 AHILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDE-IDLILLDVMMPKLNGM 60 A IL+ DDD + ++L + L G+++ ++ ++ DL++ DV+MP N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 61 ETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQ 119 + L R+++ PVL+++A+ + + E GA DYLPKPF EL+ I L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 120 NGLTPKNSDVIECQDI 135 + D + + Sbjct: 124 RRPSKLEDDSQDGMPL 139
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 30.6 bits (69), Expect = 0.020 Identities = 15/37 (40%), Positives = 19/37 (51%) Query: 535 LSGFVLLQADVTKNQPQDIELLKALNVLGLPTIEFWN 571 L G +LL + Q Q L AL +G+PTI F N Sbjct: 92 LDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFIN 128
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 1e-17 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 6/144 (4%) Query: 1 MDSTYTIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLNKESEPDLLLLDLK 60 M TI++ADD R L + ++ +G ++ + L + + DL++ D+ Sbjct: 1 MTGA-TILVADDDAAIRTVL--NQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVV 56 Query: 61 MPGANGMSGLIHLRSEYPDLPIVVISA-SEEPSVVSQVKSHGAFGFIPKSSDMRSLIAAL 119 MP N L ++ PDLP++V+SA + + + + GA+ ++PK D+ LI + Sbjct: 57 MPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEK-GAYDYLPKPFDLTELIGII 115 Query: 120 NQVLNGEPYFPAHLLVDGFVGNDL 143 + L P+ L D G L Sbjct: 116 GRALAEPKRRPSKLEDDSQDGMPL 139
>SECA#SecA protein signature. Length = 901 Score = 34.1 bits (78), Expect = 0.002 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Query: 290 MRLVQGDV-----GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMG 344 M L + + G GKTL A L A G V ++ + LA++ A N E +G Sbjct: 92 MVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLG 151 Query: 345 IQVGWL 350 + VG Sbjct: 152 LTVGIN 157
>PF06580#Sensor histidine kinase Length = 349 Score = 38.3 bits (89), Expect = 5e-05 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 36/134 (26%) Query: 308 YEVQIETELQAGLAPALGNPIAIKRSLSNLVVNALRYG------NGWVKVSSGMTADKKL 361 +E QI + P + + LV N +++G G + + T D Sbjct: 242 FENQINPAIMDVQVPPM--------LVQTLVENGIKHGIAQLPQGGKILLKG--TKDNGT 291 Query: 362 VWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGLGLAIVKRIVSQHHG---AVSVS 418 V L VE+ G + E TG GL V+ + +G + +S Sbjct: 292 VTLEVENTGSLALKNT----------------KESTGTGLQNVRERLQMLYGTEAQIKLS 335 Query: 419 NRSQGGLRAQISFP 432 + QG + A + P Sbjct: 336 EK-QGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 98.8 bits (246), Expect = 5e-26 Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 3/136 (2%) Query: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 +LV DDDA +R +L + LS G+ VR +N + R + + L+V D+++P E+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVL---RR 122 + R++ + +P+L+++A+ + I E GA DYLPKPF+ EL+ I L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 123 QVIEAPGAPSAEETII 138 + + ++ Sbjct: 125 RPSKLEDDSQDGMPLV 140
>PilS_PF08805#PilS N terminal Length = 185 Score = 32.2 bits (73), Expect = 8e-04 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 3 RTNQVSSRQNM---AGFTLIEVLVAIAIFASLSVGAYQVLNQVQRSNEISAERT 53 + +S+R+ G TL+EVL+ + + L+ AY++ + VQ + + S E+ Sbjct: 12 VFSSLSARRKKEQDKGATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQSSNEQN 65
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 29.9 bits (67), Expect = 0.001 Identities = 10/29 (34%), Positives = 18/29 (62%) Query: 3 SKRGFTLLEVLVALAIFATAAISVIRSVS 31 +RGFTLLE+++ L + +A V+ + Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFP 30
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 126 bits (317), Expect = 3e-39 Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 43/173 (24%) Query: 5 RGFTLLEILLVLVLVSASAVAVIATFPVSVKDEAKISAQSFYQRLLLLNEEAILSGQDFG 64 RGFTLLE++L+L+L+ SA V+ FP S D A + F +L + + + +GQ FG Sbjct: 4 RGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFFG 63 Query: 65 VRIDVDTRRLTFLQLTADKG--------------WQKWQNDKMTNQTTLKEG-LQLDFEL 109 V + D R FL L A G W + ++ ++ G L L F Sbjct: 64 VSVHPD--RWQFLVLEARDGADPAPADDGWSGYRWLPLRAGRVATSGSIAGGKLNLAF-A 120 Query: 110 GGGAWQKDDRLFNPGSLFDEEMFADEKKEQKQEPAPQLFVLSSGEVTPFTLSI 162 G AW D P + + GE+TPF L++ Sbjct: 121 QGEAWTPGDN-------------------------PDVLIFPGGEMTPFRLTL 148
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 214 bits (547), Expect = 7e-64 Identities = 80/305 (26%), Positives = 146/305 (47%), Gaps = 29/305 (9%) Query: 241 TVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHR-QVILEAKILEVTLSDGYQQGINW 299 + + Q L + A PD + + I+Q + R QV++EA I EV +DG GI W Sbjct: 311 IIKAHGQTNALIVTAAPDVMNDLERV--IAQLDIRRPQVLVEAIIAEVQDADGLNLGIQW 368 Query: 300 SKA------FSSNGANYKIG-SGSITQDSNGNPITSVLPGLDAIGNLLGGQSNVVISSGS 352 + F+++G +G+ + +G +S+ L + + G G+ Sbjct: 369 ANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAG-----FYQGN 423 Query: 353 FDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDI 412 + +++ +++ ++L++P + +N +A VG + +T S +GDN + + Sbjct: 424 WAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLT--GSQTTSGDNIFNTVER 481 Query: 413 TLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPL-ARSSIRE 471 GI L V PQI++ +VLL E+EQ+ + + L A + R Sbjct: 482 KTV----GIKLKVKPQINEGDSVLL-------EIEQEVSSVADAASSTSSDLGATFNTRT 530 Query: 472 SDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLK 531 ++ + G+ VV+GGL+ + D KVP LGD+P +G LFR+T+K K L++ ++ Sbjct: 531 VNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIR 590 Query: 532 PTVVG 536 PTV+ Sbjct: 591 PTVIR 595
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 282 bits (723), Expect = 5e-94 Identities = 113/407 (27%), Positives = 198/407 (48%), Gaps = 9/407 (2%) Query: 1 MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVP-----TSIAQGAAEKSAFDFN 55 MA ++YQ +A G K G EA + A ++L +G+VP Q + + Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 56 WKALLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTN 115 K L+ S L + RQ+ +L A +PL ++ +A+ L + +V +++ Sbjct: 61 RKIRLSTSD----LALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVME 116 Query: 116 GRNLSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYP 175 G +L+ +M+ P F L+ +M+ GE +G LD L +LA Y EQ + R RI+ AM YP Sbjct: 117 GHSLADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYP 176 Query: 176 TFVITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVG 235 + + + IL V+P+ F LPL TR+L+ SD + +L ++ Sbjct: 177 CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLA 236 Query: 236 LLFAFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLAL 295 AFR + R+ + L +P++G I +R+ART S++ ++ VPL Q++ + Sbjct: 237 GFMAFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRI 296 Query: 296 SAEAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLE 355 S + + N + R+ + GV++ +F P++ M++ GE +G +D +L Sbjct: 297 SGDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLER 356 Query: 356 VSDFYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMM 402 +D DRE + EP+L+V +AA+VL + L I P+ + Sbjct: 357 AADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLN 403
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 41.8 bits (98), Expect = 3e-07 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 6/54 (11%) Query: 13 MKKM--QQGFSLVELVIVIVVVGLLAVAALPRFLDVTDEAK----KASIEGVAG 60 M+ Q+GF+L+E+++VIV++G+LA +P + ++A + I + Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALEN 54
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 48.3 bits (115), Expect = 9e-10 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 1 MVIMKRQGGFTLIELVVVIVILGILAVTAAPRFLNLQGDARE----ASLEGLRGAV 52 M +Q GFTL+E++VVIVI+G+LA P + + A + + + L A+ Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENAL 56
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 41.0 bits (96), Expect = 3e-07 Identities = 11/28 (39%), Positives = 22/28 (78%) Query: 6 KGFTLIELVVVIILLGILSAYAASRFLG 33 +GFTL+E++VVI+++G+L++ +G Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMG 35
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 41.4 bits (97), Expect = 4e-07 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 14/95 (14%) Query: 17 VKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLD-E 75 ++ +RGFTL+E+++VIV++GV V +L +++ +Q AV D Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQK----------AVSDIV 50 Query: 76 VLGRAFDQHSGPNGGLPECVITETAGRTLCSAPSA 110 L A D + N P T +L AP+ Sbjct: 51 ALENALDMYKLDNHHYPT---TNQGLESLVEAPTL 82
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 31.1 bits (70), Expect = 0.003 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 7/48 (14%) Query: 3 RGFTLIEMVITIILLGIVGLFLGNIAGQAMGIYVDTTAREALIQQGRF 50 RGFTL+EM++ ++L+G+ AG + + + A RF Sbjct: 4 RGFTLLEMMLILLLMGVS-------AGMVLLAFPASRDDSAAQTLARF 44
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 30.8 bits (69), Expect = 0.042 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 20/139 (14%) Query: 677 NQTVTGTIKAVRKDNASQQCLPSFGNVQK----SVAFWSEYLNPTANNSGFQSVSVGVNG 732 NQ V+ KA + +Q L N K A +E LN + +QSV GVNG Sbjct: 788 NQAVS-VAKATGDFSRVEQALADLKNFSKEQLAQQAQKNESLNARKKSEIYQSVKNGVNG 846 Query: 733 TPIGQ--SANNATSISLNFNQNGEASFPISYREVGSLALHARFTGSGDEQDLLLEGQDSF 790 T +G S AT++S NF+ + L+A+ + + L+ + + Sbjct: 847 TLVGNGLSQAEATTLSKNFSDIKK-------------ELNAKLGNFNNNNNNGLKNEPIY 893 Query: 791 IRVPRALVLSANNPYNPTH 809 +V + A + P + Sbjct: 894 AKVNKKKAGQAASLEEPIY 912
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 567 bits (1462), Expect = 0.0 Identities = 313/347 (90%), Positives = 332/347 (95%) Query: 1 MFKKLRGMFSNDLSIDLGTANTLIYVKGQGIVLDEPSVVAIRQDKGRGGKTVAAVGHAAK 60 M KK RGMFSNDLSIDLGTANTLIYVKGQGIVL+EPSVVAIRQD+ K+VAAVGH AK Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAK 60 Query: 61 QMLGRTPGNISAIRPMKDGVIADFYVTEKMLQHFIRQVHDNSVLKPSPRVLVCVPCGSTQ 120 QMLGRTPGNI+AIRPMKDGVIADF+VTEKMLQHFI+QVH NS ++PSPRVLVCVP G+TQ Sbjct: 61 QMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQ 120 Query: 121 VERRAIRESALGAGAREVYLIDEPMAAAIGAGLRVSEPTGSMVIDIGGGTTEVAVISLNG 180 VERRAIRESA GAGAREV+LI+EPMAAAIGAGL VSE TGSMV+DIGGGTTEVAVISLNG Sbjct: 121 VERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG 180 Query: 181 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAEKIKHEIGSAYPGDDVQEIEVRGRN 240 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAE+IKHEIGSAYPGD+V+EIEVRGRN Sbjct: 181 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRN 240 Query: 241 LAEGVPRSFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISENGMVLTGGGALL 300 LAEGVPR FTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISE GMVLTGGGALL Sbjct: 241 LAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALL 300 Query: 301 KDLDRLLMEETGIPVVIADDPLTCVARGGGKALEMIDMHGGDLFSEE 347 ++LDRLLMEETGIPVV+A+DPLTCVARGGGKALEMIDMHGGDLFSEE Sbjct: 301 RNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.7 bits (116), Expect = 2e-08 Identities = 29/189 (15%), Positives = 65/189 (34%), Gaps = 30/189 (15%) Query: 114 DKGDLDAQLERAKAQLKVRQQEFNAASALKNKGLQGEVA--FTNAAAALTDAQSSLSTVQ 171 +++++ AK + ++ Q F + E+ + L+ + Sbjct: 274 QLEQIESEILSAKEEYQLVTQLF-----------KNEILDKLRQTTDNIGLLTLELAKNE 322 Query: 172 RLLDNTQVRAPFDGVVETLPI-EKGDFVGIGDPVASII-DLHKLVIEADVSERHIQHVQL 229 + +RAP V+ L + +G V + + I+ + L + A V + I + + Sbjct: 323 ERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINV 382 Query: 230 EQAARIRF--IDGTQT---QGKVRYIS--RLSSPATNTFAI--------EVEVDNPQQAI 274 Q A I+ T+ GKV+ I+ + + N + Sbjct: 383 GQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPL 442 Query: 275 PAGVSAEVE 283 +G++ E Sbjct: 443 SSGMAVTAE 451 Score = 33.3 bits (76), Expect = 0.001 Identities = 15/114 (13%), Positives = 41/114 (35%), Gaps = 4/114 (3%) Query: 65 TQTDKVIELYGRTAPDRQAKIGAEIA-GRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLE 123 Q + V G+ ++K I + E+ + +G+ V K ++ + +A Sbjct: 78 GQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTL 137 Query: 124 RAKAQL---KVRQQEFNAASALKNKGLQGEVAFTNAAAALTDAQSSLSTVQRLL 174 + ++ L ++ Q + S E+ + ++ + + L+ Sbjct: 138 KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLI 191
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 488 bits (1258), Expect = e-157 Identities = 217/1055 (20%), Positives = 443/1055 (41%), Gaps = 65/1055 (6%) Query: 42 ALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRP 101 + R L + +++AG L +P P + P + VS ++ G + + + Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 102 LEQEMRSIEGVKEMTATA-SEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDE 160 +EQ M I+ + M++T+ S G ++ L F G D A V++ + LA P LP + + Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 161 PTVNEVTLAAEQPVLSVVLYGTVPERT----TVLIARQLRDKLESFRQILSVDIAGDREE 216 ++ ++ ++ P T + +A ++D L + V + G + Sbjct: 125 QGISVEK-SSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQYA 183 Query: 217 IVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTG------YGRFSVKVPSVFES 270 + I +D L+ Y L D+ N + + N +AAG + S+ + F++ Sbjct: 184 -MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 271 LKDVLELPIKVEGK-QVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIET 329 ++ ++ ++V V+ DVA V + AR++GKPA L IK +G N ++T Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 330 VELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILG 389 + +KA L E Q +P + V +D + V+L ++++ + AI+LV +V+ L Sbjct: 303 AKAIKAKLAELQP--FFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 390 -VRTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRM 448 +R +L+ +++P L +LA FG ++N + +F +++A+G+LVD AIVV E +R M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 449 QE-GMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTA 507 E + EA + ++ + A F P+ F+ TG + +T+++ + Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 508 SLVMALLFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPI 567 S+++AL+ P L + +P + + Y +++ + Sbjct: 481 SVLVALILTPALCATLLKPVS--AEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 568 KILCGALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQV 627 + L L+ A + + + L + F PE D F ++ + +++ + Sbjct: 539 RYLLIYALIVAGMVVLFLR--LPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY 596 Query: 628 MLGH--DEFESVYTRTGGD-----DEIGVVQITPVDWQYR----RSVKAIIEELEQVTDT 676 L + ESV+T G G+ ++ W+ R S +A+I + Sbjct: 597 YLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKM---E 653 Query: 677 FPGVEIEYKFPDAGPPV-----EHDLEIEISARVADDLDKAA----QQVRLWAEANPALT 727 + + P P + + E+ + D Q + + A+ +L Sbjct: 654 LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLV 713 Query: 728 NLSDNGSKPGIDWKIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDIL 787 ++ NG + +K+++ ++ A + + T+ G + D++ + Sbjct: 714 SVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDR--GRVKKLY 771 Query: 788 VRYPSEYR-DIGRFDQLRVKTAQG-LVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLK 845 V+ +++R D+L V++A G +VP + F + R +G + + + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 846 EGYNLALELPAIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILIT 905 G + + +E + LP+ + + G + ++ S ++ + + L Sbjct: 832 PGTSSGDAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 906 QFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTY 965 + S+ ++ V VGV +F + + +G++ G+ N I++++ Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVY-FMVGLLTTIGLSAKNAILIVEFA 948 Query: 966 NQLL-KRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPST 1024 L+ K G EA L RLRP+L+T++ ILG+LP+ I GA S Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA-----------ISNGAGSG 997 Query: 1025 QWWSQLATAVAGGLAFATVLTLVLTPCLLMLGRRR 1059 + + V GG+ AT+L + P ++ RR Sbjct: 998 AQNA-VGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 79.5 bits (196), Expect = 5e-17 Identities = 90/531 (16%), Positives = 199/531 (37%), Gaps = 55/531 (10%) Query: 561 IAIRHPIKILCGALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRI 620 IR PI A+++ A A A + L +P + PP SV G + +D + Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQ--LPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 621 MSDIEQVMLGHDEFESVYTRTGGDDEIGVVQI----TPVDWQYRRSVKAIIEELEQVTDT 676 IEQ M G D + + + + + T D + + +L+ T Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQ----VQNKLQLATPL 117 Query: 677 FP-GVEIEYKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEAN--PALTNLSD-- 731 P V+ + + + ++ V+D+ + + +N L+ L+ Sbjct: 118 LPQEVQQQGISVEKSSSS----YLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVG 173 Query: 732 ----NGSKPGIDWKIDIRRDDASRFAADATLVGNTVQFVTNGLKIG----DYLPDDSDEE 783 G++ + +I + D +++ V N ++ +I P ++ Sbjct: 174 DVQLFGAQYAM--RIWLDADLLNKYKLTPVDVINQLK--VQNDQIAAGQLGGTPALPGQQ 229 Query: 784 VDILVRYPSEYRDIGRFDQLRVKTAQ--GLVPLTNFAQI-IPEQKQDTIHRVDGRRVISV 840 ++ + + +++ F ++ ++ +V L + A++ + + + I R++G+ + Sbjct: 230 LNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGL 289 Query: 841 MADLKEGYNLALELPAIEQALRELN--LPSSVEFRI-RGQNEEQEHSAVFLEKAFMVALA 897 L G N AI+ L EL P ++ + S + K A+ Sbjct: 290 GIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIM 349 Query: 898 AMAIILITQFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALA-GIVVN 956 + +++ + + AV +G FA L F + I + + LA G++V+ Sbjct: 350 LVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFG--YSINTLTMFGMVLAIGLLVD 407 Query: 957 NNIVLIDT-YNQLLKRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQ 1015 + IV+++ +++ L +EA ++ Q ++ + +PM Sbjct: 408 DAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF--------- 458 Query: 1016 KIEFGAPSTQWWSQLATAVAGGLAFATVLTLVLTP--CLLMLGRRRKGVSE 1064 FG + + Q + + +A + ++ L+LTP C +L E Sbjct: 459 ---FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHE 506
>PF06580#Sensor histidine kinase Length = 349 Score = 32.9 bits (75), Expect = 0.003 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Query: 161 HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQI 194 H ++N++QA ++ Q + S +AQL L+ QI Sbjct: 139 HFFKNYKQA--EIDQWKMASMAQEAQLMALKAQI 170
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 141 bits (356), Expect = 4e-39 Identities = 83/385 (21%), Positives = 149/385 (38%), Gaps = 81/385 (21%) Query: 5 IGIDLGTTNSCVAVLDG----DKPRVIE-NAEGERTTPSVIAYTDGETLVGQPAKRQAVT 59 + IDLGT N+ + V ++P V+ + + SV A VG AK+ Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA-------VGHDAKQMLGR 65 Query: 60 NPQNTLFAIKRLIGRRFEDEEVQRDIKIMPYKIVKADNGDAWVEAKGQKMAAPQVSAEVL 119 P N + AI+ + D V + ++L Sbjct: 66 TPGN-IAAIRPMKDGVIADFFV---------------------------------TEKML 91 Query: 120 KK-MKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAY 178 + +K+ + P ++ VP +R+A +++ + AG +I EP AAA+ Sbjct: 92 QHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGA 151 Query: 179 GLDKQGGDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRMINY 238 GL V D+GGGT ++++I ++ V + +GG+ FD +INY Sbjct: 152 GLPVS-EATGSMVVDIGGGTTEVAVISLNGV---------VYSSSVRIGGDRFDEAIINY 201 Query: 239 LVDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA----QQTDVNLPYITADATGPKH 294 + + G + AE+ K E+ SA + ++ + P+ Sbjct: 202 VRRNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRG 248 Query: 295 MNIKVTRAKLEALVEDLVQRSLEPLKVALADA--DLSVNDITD--VILVGGQTRMPMVQK 350 + + LEAL E L + + VAL +L+ +DI++ ++L GG + + + Sbjct: 249 FTLN-SNEILEALQEPLTG-IVSAVMVALEQCPPELA-SDISERGMVLTGGGALLRNLDR 305 Query: 351 KVAEFFGKEPRKDVNPDEAVAVGAA 375 + E G +P VA G Sbjct: 306 LLMEETGIPVVVAEDPLTCVARGGG 330
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 48.3 bits (115), Expect = 4e-10 Identities = 17/52 (32%), Positives = 36/52 (69%) Query: 15 QQQGMTLIELMIAVVIVGVLASIAYPAYTNYVKEGHRKQAMADMAKIQLYLE 66 +Q+G TL+E+M+ +VI+GVLAS+ P ++ +++A++D+ ++ L+ Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALD 57
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 35.3 bits (81), Expect = 5e-05 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 7/68 (10%) Query: 17 RGFTLLELLIT---VAVLTTMLLFAAPNFSKVSQQTKMTNLANELQGFLIQAKSEAVFRN 73 RGFTLLE+++ + V M+L A P S+ + L + + Sbjct: 4 RGFTLLEMMLILLLMGVSAGMVLLAFP----ASRDDSAAQTLARFEAQLRFVQQRGLQTG 59 Query: 74 QDLWVHIQ 81 Q V + Sbjct: 60 QFFGVSVH 67
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 29.9 bits (67), Expect = 0.004 Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 1/96 (1%) Query: 8 KSANQQGNTLIEFMVAALVGAMALAIVGTVFLSNQKAAAQRSKEIMLLQQVSSVMQQMKE 67 + Q+G TL+E MV ++ + ++V + N K A + K + + + + + K Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGN-KEKADKQKAVSDIVALENALDMYKL 61 Query: 68 DIQRAGFDDVGNQSMRLSGAVGVIYRASNKIGYVYR 103 D + G +S+ + + + NK GY+ R Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKR 97
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 37.2 bits (86), Expect = 4e-06 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 7/60 (11%) Query: 3 NKQSGFSLIEVMISFVLIGVGALGLV--KLQAYIEQ-RADYAMHSIEALNLAEQKLEWFR 59 +KQ GF+L+E+M+ V+IGV A LV L E+ A+ I AL E L+ ++ Sbjct: 5 DKQRGFTLLEIMVVIVIIGVLA-SLVVPNLMGNKEKADKQKAVSDIVAL---ENALDMYK 60
>cloacin#Cloacin signature. Length = 551 Score = 30.5 bits (68), Expect = 0.004 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%) Query: 128 DLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKNA 187 LKA A T D+ + QAA+ A EK + A L + + R+K+ KR AE Sbjct: 394 GLKAQRAQT--DVNNKQAAFDAAAKEK----SDADAALSSAMESRKKKEDKKRSAENNLN 447 Query: 188 ERKNE 192 + KN+ Sbjct: 448 DEKNK 452
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.5 bits (76), Expect = 0.001 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 2/81 (2%) Query: 166 VQPPADLTAAMNAQMKAERNKRAEVLEAEGVRQAQILRAEGQKQSEILKAEGEKQAAILQ 225 V PPA T + + AE +K+ + + Q + +A+ +A Sbjct: 1025 VPPPAPATPSETTETVAENSKQES--KTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 226 AEARERAAEAEAKATTMVSEA 246 E + +E + TT E Sbjct: 1083 NEVAQSGSETKETQTTETKET 1103
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.8 bits (132), Expect = 2e-10 Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 12/108 (11%) Query: 7 KVVCVDDDDFMLKALGRMIRRMRPDWEIELVEDANH-WVVDVEHAPSVVISDLLMPGKNG 65 ++ DDD + L + + R +++ + +A W +V++D++MP +N Sbjct: 5 TILVADDDAAIRTVLNQALSRA--GYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 66 EALLTELRARCPETMRVLLTGDTT-----QELPRKAHTYAQFVLPKPF 108 LL ++ P+ ++++ T + + A+ Y LPKPF Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDY----LPKPF 106
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.9 bits (140), Expect = 4e-13 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 1/117 (0%) Query: 2 AIRLTVADDSKMSRKSVIRAIPAGWDVEITEAQNGKEAVENYNNGLADVMFLDLTMPEMD 61 + VADD R + +A+ + ++ N G D++ D+ MP+ + Sbjct: 3 GATILVADDDAAIRTVLNQAL-SRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GIQVLEHFHRIDAKCLVIVISADIQPLVQQRVRELGALNFLQKPLDPAQLEQTLHEA 118 +L + V+V+SA + + E GA ++L KP D +L + A Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 5e-21 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Query: 1 MQSNREILLVDDEPAVLNALKRELRPYFPHLHTATCAQEALELLKQHPVQMVISDYRMPG 60 M IL+ DD+ A+ L + L + + A + +V++D MP Sbjct: 1 MTGAT-ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 MNGADLVIEINRRYPHIMSLILSGQADMNGLSRALNEGDLYKFLLKPWERNYLLQTILQC 120 N DL+ I + P + L++S Q +A +G Y +L KP++ L+ I + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKG-AYDYLPKPFDLTELIGIIGRA 118 Query: 121 FSEKERREE 129 +E +RR Sbjct: 119 LAEPKRRPS 127
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 97.2 bits (242), Expect = 6e-24 Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 2/124 (1%) Query: 13 VLLLDDENDILKALNRVL-RMDYNVVTFDNGADALEYLQENPIHIIISDMRMPEMDGADF 71 +L+ DD+ I LN+ L R Y+V N A ++ ++++D+ MP+ + D Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 72 LAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLKLIVGKAAEFYRL 131 L + ++ +PD L+++ + ++A G + Y+ KP+D L I+G+A + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEK-GAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 132 SRDK 135 K Sbjct: 125 RPSK 128
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.7 bits (67), Expect = 0.011 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 5/52 (9%) Query: 74 DLVYMNPYHYT---FFHQQ--PGYVALAKQKDQKLQGIIVVAQENPIKSIQD 120 +V NP H + + P + K D ++Q + +A+E + +Q Sbjct: 258 SVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQR 309
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 29.6 bits (66), Expect = 0.016 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Query: 139 GVDALDPIGVALALIAGGFWA-GYIWFGQRAGSVGSGGMTVSIGM 182 GVDA + + I GGF + GY F +A S+ SG + G+ Sbjct: 1049 GVDAY--LNGEVEAIVGGFGSYGYSSFSNQANSLNSGANNTNFGV 1091
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 190 bits (484), Expect = 7e-59 Identities = 81/378 (21%), Positives = 158/378 (41%), Gaps = 40/378 (10%) Query: 64 SWLEISLGQFQSNIEQFKSHMNANTKICAIMKADAYGNGIRGLMPTIIAQGIPCVGVASN 123 + L + N+ + + ++ +++KA+AYG+GI + I A + + Sbjct: 5 IQASLDLQALKQNLSIVRQAA-THARVWSVVKANAYGHGIERIWSAIGATD--GFALLNL 61 Query: 124 AEARAVRESGFKGELIRVRSA-SLSEMSSALDLNIEELIGTHQQALDLAELAKQSGKTLK 182 EA +RE G+KG ++ + ++ + + ++ Q L + A+ L Sbjct: 62 EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQ-LKALQNARL-KAPLD 119 Query: 183 VHIALNDGGMGRNGIDMTTEAGKKEAVSIATQ----PSLSVVGIMTHFPNY-NADEVRAK 237 +++ + + GM R G +++ Q ++ + +M+HF + D + Sbjct: 120 IYLKV-NSGMNRLGF------QPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGA 172 Query: 238 LAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFGDLPTNPEYP 297 +A+ ++++ L + ++NS L PEA D VRPG +L+G P + ++ Sbjct: 173 MARIEQAAEGLECR---------RSLSNSAATLWHPEAHFDWVRPGIILYGASP-SGQWR 222 Query: 298 SIVSF--------KTRVSSLHHLPKDSTVGYDSTFTTSRDSVLANLPVGYSDGYPRKMGN 349 I + + + + L VGY +T + + + GY+DGYPR Sbjct: 223 DIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPT 282 Query: 350 KAEVLINGQRAKVVGVTSMNTTVVDVTEIKGVLPGQEVVLFGQQQKQSIAVSEMENNAEL 409 VL++G R VG SM+ VD+T G V L+G++ I + ++ A Sbjct: 283 GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKE----IKIDDVAAAAGT 338 Query: 410 IFPELYTLWGTSNPRFYV 427 + EL P V Sbjct: 339 VGYELMCALALRVPVVTV 356
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.2 bits (151), Expect = 3e-14 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 16/140 (11%) Query: 1 MEKLNIICVDDQ---REVLSAVLQDLEPLSRWINIEDCESADEALELMDDLDAQGEWVAV 57 M I+ DD R VL+ L ++ +A + + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAG-----YDVRITSNAATLWRWIAA-----GDGDL 50 Query: 58 VISDHVMPGKSGVELLSEISADPRFIHTKKVLLTGQATHTDTINAINTAGIHHYFDKPWS 117 V++D VMP ++ +LL I ++++ Q T I A G + Y KP+ Sbjct: 51 VVTDVVMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASE-KGAYDYLPKPFD 107 Query: 118 AKILVDCVRSLVTHYVFDQR 137 L+ + + Sbjct: 108 LTELIGIIGRALAEPKRRPS 127
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 30.3 bits (68), Expect = 0.007 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 13/109 (11%) Query: 1 MKK--IALFITASLIAGNALAAQTYIRNGNIYTHEGQWAAEVGAFGSTDLLKDQDKSYGA 58 MK+ +AL I A L AG A AA+ Y ++GN G+ + S D KD D++Y Sbjct: 1 MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGL--HYFSDDSSKDGDQTY-- 56 Query: 59 LLNFGYHGE-DFNADLSGL---NYRFFGNT--GDIVNLGTYLTGSGVAY 101 + G+ GE N L+G Y NT G+ N T L +G+ + Sbjct: 57 -MRVGFKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKF 104
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 30.0 bits (67), Expect = 0.024 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Query: 512 ITAAKKQLDSINLALLELTSANTQVAAASEEQSVAADEISHNMTDIRDAGETIML 566 + A + DS+ TS + V A+ + QSV+ +++ + D+ D G+ I+L Sbjct: 24 LAACSNEADSLT------TSIDAPVTASIDLQSVSYTDLATQLNDVSDFGKMIIL 72
>BACSURFANTGN#Yersinia/Haemophilus virulence surface antigen signature. Length = 322 Score = 28.5 bits (63), Expect = 0.049 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 26/108 (24%) Query: 254 ASDVTDQVLKAHATKEASQMA----QQTSAETVRVAESGREMIDAAATIASGITESIAGA 309 ++ +T+ V+ AH K + ++ Q+ + T++ +SGR M+D Sbjct: 23 SATLTEGVIGAHRVKVETALSHSNLQKKLSATIKHNQSGRSMLD---------------- 66 Query: 310 NALMTDLSSQSQRITQIVTTINKIAEQTNLLALNAAIEAARAG--EYG 355 L+S + + T + I + L+ + A R YG Sbjct: 67 ----RKLTSDGKANQRSSFTFSMIMYRMIHFVLSTRVPAVRESVANYG 110
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.3 bits (151), Expect = 3e-14 Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 8/169 (4%) Query: 1 MRVKSEEKRQAILEIAKDSFTKQGFEQTSMSHIAKMLGGSKATLYNYFSSKEEIFTAVME 60 + +++E RQ IL++A F++QG TS+ IAK G ++ +Y +F K ++F+ + E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 SSATEQIALSFLSLDH-NRELKPALLEFGYNFLNSVLTQDAM-----SIYRMAIHEADRS 114 S + L + L E + L S +T++ I+ + + Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 115 AIGRHFYENGPKRGWARLSRYITCQIECGSLKE-CDPWIAAMHFKALLS 162 + + N + R+ + + IE L AA+ + +S Sbjct: 125 VVQQA-QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYIS 172
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 111 bits (280), Expect = 4e-29 Identities = 70/405 (17%), Positives = 136/405 (33%), Gaps = 65/405 (16%) Query: 37 LAAAIVVAGGSYALYWHFIG---SRYISTDNAYAAAEIAEVTPAVGGIIAQVNVVDTEYV 93 L A ++ A +G + + E+ P I+ ++ V + E V Sbjct: 59 LVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESV 118 Query: 94 KQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLS----------------- 136 ++GDVL++L A L+ ++ L A+ Y + Sbjct: 119 RKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQN 178 Query: 137 ----------AMVEAQEANEQRVKAQLKAA------------------QADFERAKIDLS 168 ++++ Q + Q K Q + + K L Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238 Query: 169 RREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQATKLSTIGSQKANAALTDN 228 L+ +++ + + + +A L K+ + Q ++ LS + L N Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 229 TTVDSNPEVLL----AKARYEQAKIDLERTVIRAPISGIVAKRQVQ-VGRRVQVGMPLMT 283 +D + + + + +VIRAP+S V + +V G V LM Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMV 358 Query: 284 VVPTDHIY-VDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVAGFSGGTGSAFSMIP 342 +VP D V A + ++ + VGQ + + + T +G + G I Sbjct: 359 IVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAF--PYTRYGYLVG-------KVKNIN 409 Query: 343 AQNATGNWIKVVQRLPIRIELD--PKDLQAYPLQVGLSMVATIDT 385 + +V + I IE + + PL G+++ A I T Sbjct: 410 LDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKT 454
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 102 bits (256), Expect = 2e-25 Identities = 82/395 (20%), Positives = 159/395 (40%), Gaps = 16/395 (4%) Query: 24 LAMANFLAILDTTIANVSVSNIAGSLGTSTSQGTYVITSYAVAEAISVPLTGWLASRFGS 83 L + +F ++L+ + NVS+ +IA + +V T++ + +I + G L+ + G Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 84 IRVFVTCFLLFGVFSLLCGLANSM-STLVMFRVLLGFVGGPLMPLSQTLMIRIFPKNKSH 142 R+ + ++ S++ + +S S L+M R + G L ++ R PK Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138 Query: 143 AAIGIWSMTTLVAPIMGPILGGVLCDQLSWPYIFFIKMPFAIAAALLCWKLLKKFETKTT 202 A G+ + +GP +GG++ + W Y+ I M I KLLKK Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKEVRIKG 197 Query: 203 HSKIDKVGLALLVVWVAALQLMLDEGKDHDWFESSRIVFLAVIAVIGFIAFLIWELTERN 262 H D G+ L+ V + L F +S + +++V+ F+ F+ + Sbjct: 198 H--FDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTD 245 Query: 263 PVVDLKVFRHRGYSISMVTLSLAFGAFFSISVVTPLWLQIYMGYTATISGHATASMGILA 322 P VD + ++ + I ++ + FG + P ++ + G G ++ Sbjct: 246 PFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMS 305 Query: 323 V-FLAPIVANLSSKFDPRPFVFAGVMWLGLWTFMRGFNTVDMTFSQISWPLFFQGIGMPL 381 V I L + P + GV +L + F ++ T ++ + F G+ Sbjct: 306 VIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASF-LLETTSWFMTIIIVFVLGGLSF 364 Query: 382 FFVPLTAIALGSVKPHEMESAAGLMNFIRTLSGAF 416 ++ I S+K E + L+NF LS Sbjct: 365 TKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 1e-17 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Query: 455 HILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGI 514 ILV +D + V+ L++ GYDV I N + DLV+ D+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDENAF 63 Query: 515 AATKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFLNP 572 ++ ++P++ ++A + G D + KP +++ ++ R L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 380 bits (977), Expect = e-130 Identities = 151/448 (33%), Positives = 235/448 (52%), Gaps = 16/448 (3%) Query: 32 TEHHYEFLPAHLALAQRPPSPFARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSG 91 + EFLPAHL L + P S R+ A + ++ A + + G++++ ATA G+L SG Sbjct: 35 EKDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSG 94 Query: 92 RSQVIQSYEQSRLLSIHVRDGQRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYR 151 RS+ I+ E S + I V++G+ V KG LL L LG D + S E RY+ Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 152 TL--------LNDQLLTHDPMFTALPAEQ----QALIHENYLSEKNEFDSTLASITAEMK 199 L L + L +P F + E+ +LI E + + +N+ + Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQ----KYQKELNLD 210 Query: 200 VNRTSQAARQSDIHALLQLTENISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQ 259 R + + I+ L+ RL L + I LEQE + +EA ++ Sbjct: 211 KKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRV 270 Query: 260 QRAELEVLKSQYESLEERLTGFKAQKQREWLEKRRQARLQLASLNQELSKVREREQLEII 319 +++LE ++S+ S +E + E L+K RQ + L EL+K ER+Q +I Sbjct: 271 YKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVI 330 Query: 320 RSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKV 379 R+PV VQQL V+T G V+ A+ LM+IVPE+ + + NKD+GF+ GQ+ +KV Sbjct: 331 RAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKV 390 Query: 380 DAFPYTRYGTIDAELLSISRDSTTDEQLGLVFPAQIQLKTNHIMIDGQTVELTPGMSVVA 439 +AFPYTRYG + ++ +I+ D+ D++LGLVF I ++ N + + + L+ GM+V A Sbjct: 391 EAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTA 450 Query: 440 EIKTDKRRVIDYLLSPIQEYQAEALRER 467 EIKT R VI YLLSP++E E+LRER Sbjct: 451 EIKTGMRSVISYLLSPLEESVTESLRER 478
>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C signature. Length = 170 Score = 70.3 bits (172), Expect = 4e-18 Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 1/103 (0%) Query: 18 MIGGVMLLSQHSPLHRRYVVAEWLQRILPAFELNQFCYYEDEHGRPIAFCNWAFVSEQIR 77 ++G V L SPLHR + V+ + +LPA + NQ+ + P+A+C+WA +S + Sbjct: 9 ILGHVSWLWASSPLHRNWPVSLFAINVLPAIQANQYVLLTRD-DYPVAYCSWANLSLENE 67 Query: 78 DELLSGVREISPSDWRSGQQIYIPEMIAPFGHGREVVNDLRRR 120 + L+ V + DW SG + + + IAPFG + +R++ Sbjct: 68 IKYLNDVTSLVAEDWTSGDRKWFIDWIAPFGDNGALYKYMRKK 110
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 64.6 bits (157), Expect = 9e-12 Identities = 60/261 (22%), Positives = 99/261 (37%), Gaps = 72/261 (27%) Query: 4109 GGRGDDVFYATGKSNIFTGGEGNDMGVLMGRENMMFGGDGNDTAVVAGRINHVFLGAGDD 4168 G D F+ + ++IF G +G+D ++ G DGND ++ G+D Sbjct: 724 GTTRADKFFGSKFTDIFHGADGDD---------LIEGNDGND---------RLYGDKGND 765 Query: 4169 QSFVFGEGGEIDTGSGRDYVVTSGNFNRVDTGDDQDYSVTIGNNNQVELGAGNDFANIFG 4228 + G+G D ++ GD D + + NN + G G+D + G Sbjct: 766 ---------TLSGGNGDD---------QLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQG 807 Query: 4229 N---YNRINAGAGNDVVKLMGYHAVLNGGDGDDHLIATAISKFSQFNGGEGRDLMVLGGY 4285 N N + G GND + +L+GG+GDD L GG G D+ Sbjct: 808 NSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLL-----------KGGYGNDIYRYL-- 854 Query: 4286 QNTFKGGTDVDSFVVSGDVIDNLVEDIRSEDNIVFNGIDWQKLWFERSGYDLKLSILRDP 4345 SG + +D ED + ID++ + F+R G DL + Sbjct: 855 ---------------SGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMY----- 894 Query: 4346 SNDSDQSKFEHIGSVTFSDYF 4366 + + H +TF ++F Sbjct: 895 KGEGNVLSIGHKNGITFRNWF 915 Score = 47.7 bits (113), Expect = 1e-06 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 9/135 (6%) Query: 4091 GGDGKDLGAYLGDNNNFWGGRGDDVFYATGKSNIFTGGEGNDMGVLMGRENMMFGGDGND 4150 G DG DL N+ +G +G+D + GG+GND + + N + GGDG+D Sbjct: 742 GADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDD 801 Query: 4151 TAVVAG---RINHVFLGAGDDQSFVFGEGGEIDTGSGRDYVVTSGNFNRVDTGDDQDYSV 4207 V G N +F G G+D+ + +D G G D + D Y Sbjct: 802 EFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLL------KGGYGNDIYRYLS 855 Query: 4208 TIGNNNQVELGAGND 4222 G++ + G D Sbjct: 856 GYGHHIIDDDGGKED 870 Score = 43.4 bits (102), Expect = 2e-05 Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 6/129 (4%) Query: 4075 GDGDINISLGNYN-FNWGGDGKDLGAYLGDNNNFWGGRGDDVFYATG---KSNIFTGGEG 4130 G+ +S GN + +GGDG D + NN GG GDD F G N+ GG+G Sbjct: 761 DKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKG 820 Query: 4131 NDMGVLMGRENMMFGGDGNDTAVVAGRINHVFL-GAGDDQSFVFGEGGEIDTGSGRDYVV 4189 ND +++ GG+G+D + G N ++ +G + +GG+ D S D Sbjct: 821 NDKLYGSEGADLLDGGEGDDL-LKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDF 879 Query: 4190 TSGNFNRVD 4198 F R Sbjct: 880 RDVAFKREG 888
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.7 bits (168), Expect = 5e-15 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 15/116 (12%) Query: 197 TIMVVDDSAFIRSLIQDTLSSAGYNIIACKDGGEAHEKLMELKQAAKEENVPVSELIDAV 256 TI+V DD A IR+++ LS AGY++ + + + D V Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA-------------AGDGDLV 51 Query: 257 VTDVEMPRMDGMHLIKRLRDDDSYSSMPIVMFSSLMSDDNRAKALALGANDTLTKP 312 VTDV MP + L+ R++ +P+++ S+ + KA GA D L KP Sbjct: 52 VTDVVMPDENAFDLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 4e-20 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 6/129 (4%) Query: 2 KTRLLIIEDDAAIAQLHHRYLSQLEGFEVVGIAMSQADARLQMEVLNPDLVLLDVYLPDG 61 +L+ +DDAAI + ++ LS+ G++V + + A + + DLV+ DV +PD Sbjct: 3 GATILVADDDAAIRTVLNQALSR-AGYDVRITS-NAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 TGLELLQWIRGRNVHCDVILITAAREVETLQQAMRGGVVDYLLKPV----MFPRLETALR 117 +LL I+ V++++A T +A G DYL KP + + AL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 118 KYQMRQAEL 126 + + R ++L Sbjct: 121 EPKRRPSKL 129
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 9e-05 Identities = 39/224 (17%), Positives = 82/224 (36%), Gaps = 40/224 (17%) Query: 321 EQLAQTREYAEMLRSQTHEH--RNKLNTISGLLQMGELDAVQQLIGQETEHYQVLIEFLR 378 +AQ + L++Q + H N LN I L+ ++++ L E +R Sbjct: 155 ASMAQEAQL-MALKAQINPHFMFNALNNIRALILEDP-TKAREMLTS-------LSELMR 205 Query: 379 ETIKDPLIAGMLLGKTERARELGLELM-VEDGARLE-TLPIHIKAEDVVT---ILGNLID 433 +++ + L + L+L ++ RL+ I+ DV ++ L++ Sbjct: 206 YSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVE 265 Query: 434 NAFEATLTAIRTLSPVPPERRVIEVSISDFGNEIILEVDDQGCGLPKELEHWQLTEKGVS 493 N + + + + I + + + LEV++ G K + Sbjct: 266 NGIKHGIAQLP-------QGGKILLKGTKDNGTVTLEVENTGSLALKNTK---------- 308 Query: 494 SKAVQNRGVGLFLVKQ-LADRY--QGQLDMHSKAQGTRMTVYLP 534 ++ G GL V++ L Y + Q+ + K V +P Sbjct: 309 ----ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.6 bits (108), Expect = 2e-07 Identities = 22/165 (13%), Positives = 56/165 (33%), Gaps = 15/165 (9%) Query: 33 VTLQGQI--ESQQYSISSKVPGRIDQVLVRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQ 90 T G++ + I + +++V++G+ V KG ++ L + +A + + Sbjct: 84 ATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSL 143 Query: 91 KAAGALAQEAENGAREQQIQAAKDQWLKAQAAAELAEKTYLRVNNLYNDGVVSEQKRDEA 150 A + +R ++ + L + + + + + E Sbjct: 144 LQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSE---------EEVLRLTSLIKEQ 194 Query: 151 QTQWQAAKYTESAALQMYQLAKEGARE----ETKQAALEKARMAA 191 + WQ KY + L + + + +EK+R+ Sbjct: 195 FSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD 239
>FLAGELLIN#Flagellin signature. Length = 507 Score = 31.2 bits (70), Expect = 0.015 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 494 RDSANLIEQGVSGASKAVEKARLAGTALSQITANVDRISTMNTQIATAS---EEQSAVTE 550 + + Q A+ + A+ AL++I N+ R+ ++ Q + + ++ + Sbjct: 54 TSNIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQD 113 Query: 551 EINKNIITISEISNQTALGAQQ 572 EI + + I +SNQT + Sbjct: 114 EIQQRLEEIDRVSNQTQFNGVK 135
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 28.3 bits (63), Expect = 0.029 Identities = 9/32 (28%), Positives = 17/32 (53%) Query: 93 LQLMDDLLKAGYRLYALTDNVNEIVAYLKKQY 124 ++L L+K+ Y LY + + N +V Y + Sbjct: 220 MELTKCLIKSLYFLYGIKPSDNLVVPYRLRTE 251
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 38.4 bits (89), Expect = 5e-05 Identities = 37/240 (15%), Positives = 68/240 (28%), Gaps = 44/240 (18%) Query: 30 SSRIIGGEQATAGEWPYMVAL-TARNSSHVFCGGSYLGGRYVLTAAHCVDKEDPAKGDVL 88 ++ T G + + + + G +G +LT H VD + Sbjct: 73 NNDRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALK 132 Query: 89 LGAFDMNDVNTAERIHVRQIYVHNSYITASMGNDIAVLELERDPL---PRRSVQISDSSD 145 +N N + S D+A+++ + V+ + S+ Sbjct: 133 AFPSAINQDNYPN-----GGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSN 187 Query: 146 FNELTKDSPMTVIGFGNRKEVDGEKSDPATILHQVQVPFVPLPECKTKGSDQDAKNNYSQ 205 E + +TV G+ K V I K Q Sbjct: 188 NAETQVNQNITVTGYPGDKPVATMWESKGKI--------------------TYLKGEAMQ 227 Query: 206 LTNNAFCAGSFGKDACSGDSGGPIFFDSNNGRKQMGVVSWGDGCGRANSPGVYTNLSVFN 265 + G+SG P+F N + +G+ G + V+ N +V N Sbjct: 228 YDLSTTG----------GNSGSPVF---NEKNEVIGIHWG--GVPNEFNGAVFINENVRN 272
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 522 bits (1346), Expect = e-173 Identities = 111/598 (18%), Positives = 212/598 (35%), Gaps = 65/598 (10%) Query: 41 DLPAQIAVATQACYNSWFYAPTATLDNLYSEASLAHLQTVLDAEIARYTGEAQQARRLEN 100 DL I + F + + + + L+ YT + + + Sbjct: 105 DLVELIKTISYENVPDLFNFNDGSYTFFSNRDRVQAIIYGLEDSGRTYTAD--DDKGIPT 162 Query: 101 YGEFIRAAYYVRYNAGR--EPYSQALSQRFAQSIDRFLRHPHAFDQGREQVGAMKSLSLM 158 EF+RA YY+ + + + L ++ + + + Q G +++L + Sbjct: 163 LVEFLRAGYYLGFYNKQLSYLNTPQLKNECLPAMKAIQYNSNFRLGTKAQDGVVEALGRL 222 Query: 159 VDNVKQLPLTMDAMILALHRFNRETAQDTQWVDGLNNLFRAMSG---------------H 203 + N P ++ I L F + N +F M G Sbjct: 223 IGNASADPEVINNCIYVLSDFKDNIDKYGSNYSKGNAVFNLMKGIDYYTNSVIYNTKGYD 282 Query: 204 VGNSEFYRYLAANTQHIDTL----YRFALDNEWALETDAEFLVYNALRETGRLL-ISPDA 258 N+EFY + + +++L + DN W LV NAL TGR+ D Sbjct: 283 AKNTEFYNRIDPYMERLESLCTIGDKLNNDNAW--------LVNNALYYTGRMGKFREDP 334 Query: 259 ITKQKARHVMRQVIARYPLGSKHDKLWLAAVEMLHYYAPEVLQQLGIDLDAAKRDLAARI 318 Q+A + + + YP S +++ ID + K D + Sbjct: 335 SISQRA---LERAMKEYPYLSYQYIEAANDLDLNFGGKNSSGN--DIDFNKIKADAREKY 389 Query: 319 LPNRFECQ-GPAIIRSQD-LSDAQAAQACDVLDKKEQDFHQVANTGLAPVADDYNTRVEV 376 LP + G ++++ D +++ + + + + F +V A + + + V Sbjct: 390 LPKTYTFDDGKFVVKAGDKVTEEKIKRLYWASKEVKAQFMRVVQNDKALEEGNPDDILTV 449 Query: 377 VVFANNSSYVNYSSFLFGNTTDNGGQYLEGNPADQNNQARFVAYRYANDADLSILN--LE 434 V++ + Y + G +TDNGG Y+E N F Y + + L Sbjct: 450 VIYNSPEEYKLN-RIINGFSTDNGGIYIE-------NIGTFFTYERTPEESIYTLEELFR 501 Query: 435 HEYTHYLDARFNQYGSFSDN--LAHGHIVWWLEGFAEYM--HYKQGYQAAVKLISQG--- 487 HE+THYL R+ G + G + W+ EG AE+ + K ++QG Sbjct: 502 HEFTHYLQGRYVVPGMWGQGEFYQEGVLTWYEEGTAEFFAGSTRTDGIKPRKSVTQGLAY 561 Query: 488 ----KLSLSDVFATTYSNDTNRIYRWGYLAVRFMLEKHPQDVESLLALSRTGQFDQWAQS 543 ++SL V Y + Y +G+ +M + + + + Sbjct: 562 DRNNRMSLYGVLHAKY--GSWDFYNYGFALSNYMYNNNMGMFNKMTNYIKNNDVSGYKDY 619 Query: 544 VKLLGERY--NTEFSAWLDTLQRDNPDNPDNPDNPDNPDNPDNPEQPNPEPNAVTQLA 599 + + Y N ++ ++D+L +N DN D P D N + N N + +++ Sbjct: 620 IASMSSDYGLNDKYQDYMDSL-LNNIDNLDVPLVSDEYVNGHEAKDINEITNDIKEVS 676 Score = 68.6 bits (167), Expect = 6e-14 Identities = 26/187 (13%), Positives = 45/187 (24%), Gaps = 29/187 (15%) Query: 404 LEGNPADQNN------QARFVAYRYANDADLSILNLEHEYTHYLDARFNQYGSFSDNLAH 457 N N Y+ + S L +Y Y+D+ N + L Sbjct: 594 YNNNMGMFNKMTNYIKNNDVSGYKDYIASMSSDYGLNDKYQDYMDSLLNNIDNLDVPLVS 653 Query: 458 GHIVWWLEGFAEYMHYKQGYQAAVKLISQGKL-SLSDVFATTYSNDTNRIYRWGYLAVRF 516 + A+ ++ V I F TTY R Y+ R Sbjct: 654 --DEYVNGHEAKDINEITNDIKEVSNIKDLSSNVEKSQFFTTYD------MRGTYVGGRS 705 Query: 517 MLEKHPQ-----DVESLLALSRTGQFD-------QWAQSVKLLGER--YNTEFSAWLDTL 562 E++ + +L ++ + Y+ F Sbjct: 706 QGEENDWKDMNSKLNDILKELSKKSWNGYKTVTAYFVNHKVDGNGNYVYDVVFHGMNTDT 765 Query: 563 QRDNPDN 569 D N Sbjct: 766 NTDVHVN 772
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.5 bits (113), Expect = 9e-08 Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 8/146 (5%) Query: 10 KVLIIDDAPIVIASLRSMLLKLGFTEPNIVWSKSPRAAVFMAGRQRFDIFICDYNFGKGL 69 +L+ DD + L L + G+ + + + D+ + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYD---VRITSNAATLWRWIAAGDGDLVVTDVVMP-DE 60 Query: 70 NGKQVFEELKHYKLIKQDAVFVLVTGENSAYVVHSILELKPDEYILKPFNIMTLQERLTN 129 N + L K + D ++++ +N+ E +Y+ KPF++ L + Sbjct: 61 NAFDL---LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 130 AIS-RKHALKALYQAERDGDAELGLS 154 A++ K L +DG +G S Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPLVGRS 143
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.2 bits (151), Expect = 2e-12 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 12/121 (9%) Query: 2 KIMIVEDDRIQATSLKLKLRQLGLDDVILAENGFAALELCNKVGIDLMFCDIRMPQMDGI 61 I++ +DD T L L + G D V + N DL+ D+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 SLLSQLSLQAPKLGVVILSA---VEDTILELTHNMCSLAGFAYVDRLPKPYEVEDLQRVV 118 LL ++ P L V+++SA I G AY D LPKP+++ +L ++ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKAS------EKG-AY-DYLPKPFDLTELIGII 115 Query: 119 E 119 Sbjct: 116 G 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.5 bits (144), Expect = 5e-11 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 11/153 (7%) Query: 918 GHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLD 977 +LVADDDA R ++ + LS G + S+ + ++ DL++TD MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPDEN 61 Query: 978 GFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYL 1037 F L ++K+ V+ +A+++ + A +A + G + KP+ L L ++ R Sbjct: 62 AFDLLPRIKKARPDLP--VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR-- 117 Query: 1038 TTQWVALPEQSWLDAYQEEEREEMAMVVAESLA 1070 AL E + E++ ++ +V S A Sbjct: 118 -----ALAEPKRRPSKLEDDSQDGMPLVGRSAA 145
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 492 bits (1268), Expect = e-159 Identities = 219/1051 (20%), Positives = 436/1051 (41%), Gaps = 63/1051 (5%) Query: 22 VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81 +A +FI + +W++++I ++ G A L + P V +YPGA Q V++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 82 VTYPLEKAIQQLTYVDEVNSISSR-GLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGA 140 VT +E+ + + + ++S S G IT+T ++ PD +++ K+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQV---QVQNKLQLATPL 117 Query: 141 LPPGVNPP-LVIDDFGDVYGILLAVTGEGYSY--KELLDYVD-YLRRELELIDGVSKVSV 196 LP V + ++ Y ++ + ++ DYV ++ L ++GV V + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 197 SGQQQEQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYI-------RIH 249 G Q + I + ++ ++P V N L QN AG + G+ + I Sbjct: 178 FGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQL-GGTPALPGQQLNASII 235 Query: 250 PTGEFDDVEKLGDLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFA 309 F + E+ G + L ++ L+DVA V+ G E + + NGK A +G+ A Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG-GENYNVIARINGKPAAGLGIKLA 294 Query: 310 QGVNVVEVGQRFDRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIV 369 G N ++ + +LAEL+ P G+ + Y V S+ V +L +A+ +V +V Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 370 LLFFMG-LRSGLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVE 428 + F+ +R+ L+ + + + +LGTF + F + +++ +V+A+G+LVD+AIVVVE Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 429 GILIGTQKGRTRLQAAT-DIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVL 487 + + + + AT ++Q + L+G ++ F P+ +TG + Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 488 LISLMLSWFTAISLTPFFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFC------M 541 + ++ LS A+ LTP + A + + F + + Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 542 RRAWLTMGVLVLGLAASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELE 601 + + L +A + F ++ +F P +F+ + +P G T +L ++ Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 602 KWLSAQES--VDSVTTTAGKGLQRFMLTYSPEKSYAAYGEIT-----TRVTDYQQLAALM 654 + E V+SV T G ++S + A ++ R D A++ Sbjct: 595 DYYLKNEKANVESVFTVNG-------FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 655 ARFRAHLDARYPQINYKLK---QIELGPGGGAKIE-ARIVGSDPTVLRSIAAQVMDVMYA 710 R + L +ELG G E G L Q++ + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 711 DPGA-YNIRHDWRERTKVLEPQFNESQARRYGITKADVDEFLAMSFSGKTIGVYRDGTTL 769 P + ++R + E T + + ++ +A+ G++ +D+++ ++ + G + + D + Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 770 MPIVARLPEEERVDIRNIEGMKIWSPALSEYIPLQQVTLGYEMRWED--PLIVRKNRKRM 827 + + + R+ +++ + + S A E +P T W P + R N Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRS-ANGEMVPFSAFT---TSHWVYGSPRLERYNGLPS 823 Query: 828 LTVMADPDL-LGEETAATLQQRLQPQIEAIPLPPGYFLEWGGEYESSGDAKASLFKTMPL 886 + + + A L + L + LP G +W G + + + Sbjct: 824 MEIQGEAAPGTSSGDAMALMENLASK-----LPAGIGYDWTGMSYQERLSGNQAPALVAI 878 Query: 887 GYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGFMALLGFLSLSGMLL 946 ++ +FL L+ S + V L VPL ++GV N ++G L+ G+ Sbjct: 879 SFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSA 938 Query: 947 KNGIVLLDQI-EIEMHSGKDPYLAVVDASLSRVRPVCMAAVTTILGMIPLLPDI-----F 1000 KN I++++ ++ GK A + A R+RP+ M ++ ILG++PL Sbjct: 939 KNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGA 998 Query: 1001 FRPMAVTIMFGLGFATVLTLIVVPVLYRLFH 1031 + + +M G+ AT+L + VPV + + Sbjct: 999 QNAVGIGVMGGMVSATLLAIFFVPVFFVVIR 1029
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.4 bits (97), Expect = 4e-06 Identities = 19/133 (14%), Positives = 46/133 (34%), Gaps = 19/133 (14%) Query: 76 GEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARF-----------SVIDSQYRRS 124 + + VKEG V++GD+L ++ Q+ + S Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 125 QPLV----EKGLLAKSQFDEIAAQR----QIARAELELAKLRLSFTQLRAPMDGIISRVS 176 P + E S+ + + Q + + + + L+ + RA +++R++ Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 177 AEQFESVQVGQQI 189 + S ++ Sbjct: 225 RYENLSRVEKSRL 237 Score = 31.3 bits (71), Expect = 0.006 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 12/114 (10%) Query: 110 AQARFSVIDSQYRRSQPLVEKGLLAKSQFDEIA-AQRQIARAELELAKL--RLSFTQLRA 166 Q ++ ++ L D++ I LELAK R + +RA Sbjct: 276 EQIESEILSAKEEYQL---VTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRA 332 Query: 167 PMDGIISRVSAEQFESV-QVGQQIVNIHNIDS---VEVLIQ--LPDRLYATQPT 214 P+ + ++ V + ++ I D V L+Q + Q Sbjct: 333 PVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNA 386 Score = 30.6 bits (69), Expect = 0.012 Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 5/113 (4%) Query: 106 AVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQFDEIAAQRQIARAELELAKLRLSFTQLR 165 ++ + V S+ L+ K +AK + + + A EL + Q+ Sbjct: 222 RINRYENLSRVEKSRLDDFSSLLHKQAIAKHAV--LEQENKYVEAVNELRVYKSQLEQIE 279 Query: 166 APMDGIISRVS--AEQFESVQVGQQIVNIHNIDSVEV-LIQLPDRLYATQPTA 215 + + + F++ + + NI + + L + +R A+ A Sbjct: 280 SEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRA 332
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 7e-07 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 34/211 (16%) Query: 95 ALLEQQ---ASANFQLADVQFQRAQ------RLRQDKVVSEQDFD--------QAQANHN 137 A+LEQ+ A +L + Q Q +++ + Q F Q N Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIG 312 Query: 138 SAKATWEQAKANLRYTQLIAPYDGTIS-LIPAEQYEYVAAKQGVMNI-QTNQLLKVQFLL 195 + + + + + AP + L + V + +M I + L+V L+ Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALV 372 Query: 196 PDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEI-----DTEADSKT-------RSYKVT 243 + + F G A + ++FP +Y ++ D D + S + Sbjct: 373 QNKDIG-FINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEEN 431 Query: 244 MVMERPNDVGILPGMAGRVSLMAPSGSATVI 274 + ++ + GMA V+ +G +VI Sbjct: 432 CLSTGNKNIPLSSGMA--VTAEIKTGMRSVI 460 Score = 36.7 bits (85), Expect = 1e-04 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 24/136 (17%) Query: 33 AKLTTVSVGNNTFSRQFPATTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPD 92 ++ V+ N T +G + ++ I V G+ V+KG+VL +L Sbjct: 78 GQVEIVATANGKL-------THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL 130 Query: 93 EYALLEQQASANFQLADVQFQRAQRLRQD-----------------KVVSEQDFDQAQAN 135 + ++ A ++ R Q L + + VSE++ + + Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 136 HNSAKATWEQAKANLR 151 +TW+ K Sbjct: 191 IKEQFSTWQNQKYQKE 206
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 359 bits (923), Expect = e-124 Identities = 130/339 (38%), Positives = 182/339 (53%), Gaps = 18/339 (5%) Query: 3 QSLLGESPAFLAVLDKVSRLAPIDRPVLVIGERGTGKELIAQRLHYLSKRWEQPLVSLNC 62 L+G S A + ++RL D +++ GE GTGKEL+A+ LH KR P V++N Sbjct: 137 MPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINM 196 Query: 63 STLSEGLIDSELFGHESGSFTGAKGRHQGRFERAEGGTLFLDELATAPLSVQEKLLRVIE 122 + + LI+SELFGHE G+FTGA+ R GRFE+AEGGTLFLDE+ P+ Q +LLRV++ Sbjct: 197 AAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQ 256 Query: 123 YGQYERVGGNQVLNANVRLVCATNANLPQMAQQGTFRADLLDRLAFDVIHLPALRHRPED 182 G+Y VGG + ++VR+V ATN +L Q QG FR DL RL + LP LR R ED Sbjct: 257 QGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAED 316 Query: 183 IALLAEHFAIRMCRELQLPLFVGFSPNALHQLQAYSWPGNVRELKNVVERAV--YQHGLN 240 I L HF + +E F AL ++A+ WPGNVREL+N+V R Y + Sbjct: 317 IPDLVRHFVQQAEKEGLDVK--RFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVI 374 Query: 241 SQPIDQLVF------NPFQSSDIVTDE-SEQVDVRHTTRTDFHLPLD-------YKAWQQ 286 ++ I + +P + + + S V R F D Y Sbjct: 375 TREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLA 434 Query: 287 QCDIELLQAALTQAKFNQKHAAQLLGLSYHQFRGMMRKY 325 + + L+ AALT + NQ AA LLGL+ + R +R+ Sbjct: 435 EMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.8 bits (160), Expect = 2e-15 Identities = 22/88 (25%), Positives = 36/88 (40%) Query: 20 RSSTKEKILDVAEGLFAEYGFNDTSLRTITSKAGVNLASVNYHFGDKKTLVRAVLNRYLE 79 T++ ILDVA LF++ G + TSL I AGV ++ +HF DK L + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 80 AFMPEMKQSLERLNERDDYDMAEVFEAL 107 + + + E+ + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHV 96
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 29.2 bits (65), Expect = 0.049 Identities = 17/48 (35%), Positives = 23/48 (47%) Query: 134 ELIPSHKPDARIMVSRQPVGVVAAITPWNFPAAMITRKCAPAFAAGCA 181 E+ +H+ R +VS VG + +ITP AA T PA G A Sbjct: 2 EIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIA 49
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.0 bits (150), Expect = 4e-14 Identities = 31/187 (16%), Positives = 72/187 (38%), Gaps = 8/187 (4%) Query: 4 SEQKRLALIEAAKEEFTQFGFHAANMDRVCERAGTSKRTLYRHFTSKELLFIEVINLLVA 63 +++ R +++ A F+Q G + ++ + + AG ++ +Y HF K LF E+ L + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 64 Q--PHKVGFEYQSTRSLADQLHDYFAAKIDLLYRTIGLDVLRMIV---GEFVRDPALTQQ 118 ++ ++ + L + ++ +L I+ EFV + A+ QQ Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 119 YLALMGTQDTALTAW-LQAAIKDGKLIEKEVAPMATTLMNLFHGQFL--WPQLLAAVELP 175 + + L+ I+ L + A +M + + W + +L Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLK 188 Query: 176 DAKQQQI 182 + + Sbjct: 189 KEARDYV 195
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.4 bits (149), Expect = 7e-12 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 3/134 (2%) Query: 603 RVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDGIQ 662 +L+ +D+ +L + G++ + + DLV+ D MP ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 663 ATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHELDMALEQHSER 722 I++ P +L+ T K GA D + KP EL + + Sbjct: 65 LLPRIKKA-RPDLPVLVMSAQNTF--MTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 723 LYQFHREPSLPSVE 736 + + S + Sbjct: 122 PKRRPSKLEDDSQD 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.018 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 16/102 (15%) Query: 351 LCLVGPPGVGKTSLGRSIAAATGRQ---YVRMALGGVRD---EAEIRGHRRTYIGSMPGK 404 L + G G GK + R++ R+ +V + + + E+E+ GH + G+ G Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEK---GAFTGA 219 Query: 405 LIQKMAKVGVKN--PLFLLDEIDKMSSDMRGDPASALLEVLD 444 + + LF LDEI M D + + LL VL Sbjct: 220 QTRSTGRFEQAEGGTLF-LDEIGDMPMDAQ----TRLLRVLQ 256
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.018 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 83 DITNRYLEQVNEVIQAADT--YLIDRFGNTIASSNWNLDRSFIGRNFAWRPYFY 134 D+ N EQ NE D ++I+ G I + NW + FI +N + Y Y Sbjct: 573 DVVNHGTEQDNEEFPEKDNEIFIINPEGEFILTKNWEMTGRFIEKNITGKDYLY 626
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 447 bits (1152), Expect = e-157 Identities = 167/483 (34%), Positives = 245/483 (50%), Gaps = 50/483 (10%) Query: 4 VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63 + + DD++ IR L Q+ A + + ++ I A G ++V+D+ +P + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI-AAGDGDLVVTDVVMPDENAFD 64 Query: 64 LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123 LL + +LPV++++ A+KA GAYD++ KPF LI + RA+ + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183 + G ++G +AA+Q + +A++ T +++ GE+GTGKELVAR Sbjct: 125 RPSKLEDDSQD------GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243 +LH+ RR FVAIN A+P +LIESEL+GHEKGAFTGA +R G+FE A+GGTLFLD Sbjct: 179 ALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLD 238 Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303 EI MPM AQ RLLRVLQ+ +G I D+R++AAT DLKQ+ +G FR+DLYY Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYY 298 Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363 RLN+V L +PPLR+R EDIP L HF+ A + G ++ + +H WPGNVRE Sbjct: 299 RLNVVPLRLPPLRDRAEDIPDLVRHFVQ-QAEKEGLDVKRFDQEALELMKAHPWPGNVRE 357 Query: 364 LRNAAERYVLLGK--------LAQFAESHEPKSKLLG----------------------- 392 L N R L + S P S + Sbjct: 358 LENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFA 417 Query: 393 -----------LNEQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLDK 441 + +AE E L+ L G+ + L L R TL K+++ + Sbjct: 418 SFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSV 477 Query: 442 ESY 444 Sbjct: 478 YRS 480
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.0 bits (161), Expect = 7e-14 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 2 AIKVLVVDDSSFFRRRVSEIINSESRLEVIDVAVNGKEAVEKAARLKPDVITMDIEMPVM 61 +LV DD + R +++ ++ + + N A D++ D+ MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGISAVREIMANNP-VPILMFSSLTHDGAKATLDALDAGALDFLPKKFEDIARNRDEAVT 120 + + I P +P+L+ S+ + + A + GA D+LPK F D+ Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSA--QNTFMTAIKASEKGAYDYLPKPF-DLTELIGIIGR 117 Query: 121 LLQQR 125 L + Sbjct: 118 ALAEP 122
>PF06580#Sensor histidine kinase Length = 349 Score = 41.4 bits (97), Expect = 9e-06 Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 10/79 (12%) Query: 490 ETDLDKNLVEALADPLI--HLVRNSVDHGIEMPDERAKNGKSRTGKVILSASQEGDHIQL 547 E ++ +++ P++ LV N + HGI + GK++L +++ + L Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTL 294 Query: 548 AIVDDGAGMDPDKLRGIAV 566 + + G+ + Sbjct: 295 EVENTGSLALKNTKESTGT 313
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 1e-23 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 10 KILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGI 69 IL+ DD + +R ++ L G++ + T + GD D VVTD MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 70 DLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPF 114 DLL I+ + LPVL+++A+ I+A++ G Y+ KPF Sbjct: 64 DLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 29.2 bits (65), Expect = 0.025 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 141 IRAFGTLEDEMDILLIDTAAGISDMVVSFSRAAQDVVVVVCDEPTSITDAYALIKLLSKE 200 I F D++D+ +S + F+ Q+V++ D SIT+ + L Sbjct: 404 IADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQW-DAANSITN----LWLHEAG 458 Query: 201 HQVQRFKI 208 H F + Sbjct: 459 HSSVDFLV 466
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 346 bits (890), Expect = e-120 Identities = 107/350 (30%), Positives = 184/350 (52%), Gaps = 4/350 (1%) Query: 8 ERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMVAMQRLFEL 67 E+TE+ TP++++ A++KGQVA+SKE+ S +++V + LM + + M E Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQ 63 Query: 68 SREEIFDLGKLFDIIGGSLVNLLLPLLMILSTLFIAALIGAAGVGGISFSAEAAMPKLSK 127 S + L ++ L+ +L+ + A+ G S EA P + K Sbjct: 64 SY--LPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKK 121 Query: 128 MNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQNIFHAL 187 +NP+ G KR+F ++S VE LKSILKV+L+S + + +I+ + L QL + I L Sbjct: 122 INPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPT-CGIECITPLL 180 Query: 188 -DILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKPEVKGRIRM 246 IL +++ + +V+ D F+ +Q+ ++LKM+K E+K EYK+ EG PE+K + R Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 247 LQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIREIAR 306 +E R M + ++ V++ NP H ++ + YK+ P+V K D +R+IA Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 307 EYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLKQYRRK 356 E + I+ PLARALY ++ IP A A+VL ++ + ++ Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQH 350
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 121 bits (305), Expect = 2e-35 Identities = 84/215 (39%), Positives = 127/215 (59%), Gaps = 2/215 (0%) Query: 15 YFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQGFMI 74 YFWP R+ A++ + R VP RV+L L + +TFA+ P++PA + + S + Sbjct: 16 YFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAND--VPVFSFFALWL 73 Query: 75 TFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMLLA 134 +QI+IG+A+G QF G+I+G+Q L FA+ VDPA+ N P+L ++ +LA Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 135 TLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSLSGIIA 194 L FL +GHL +I L+V +F +LPIG L + F L ++F L ++L I Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 195 LLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLL 229 LLT+NL+ G++ R APQL+IF +GF L VG+ L Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISL 228
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 54.8 bits (132), Expect = 8e-14 Identities = 24/75 (32%), Positives = 41/75 (54%) Query: 7 VELFKESLWLVLIMVCAIIIPSLLVGLVVAIFQAATSINEQTLSFLPRLIITLLALMFFG 66 V ++L+LVLI+ I + ++GL+V +FQ T + EQTL F +L+ L L Sbjct: 5 VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64 Query: 67 HWMTQILMDFFYSMI 81 W ++L+ + +I Sbjct: 65 GWYGEVLLSYGRQVI 79
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 280 bits (718), Expect = 3e-97 Identities = 116/232 (50%), Positives = 165/232 (71%), Gaps = 1/232 (0%) Query: 67 IALGSSSGGGGIPAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVM 126 + L + +P T G + +S+ +Q L +T L F+PA++++MTSFTRI++V Sbjct: 12 LWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVF 71 Query: 127 SILRQAMGLQQTPSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQ 186 +LR A+G P NQV++G+ALFLTFFIM+PV ++I A QP+ E+I+ ++A + Sbjct: 72 GLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGA 131 Query: 187 EPLKAFMLKQTRVNDLETFVEMSGA-QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFL 245 +PL+ FML+QTR DL F ++ + PE V M +L+PA++TSELKTAFQIGF +F+ Sbjct: 132 QPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFI 191 Query: 246 PFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 PFLIIDLV+ASVLMA+GMMM+ P ++LPFKLMLFVLVDGW L++ +LA SF Sbjct: 192 PFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 108 bits (272), Expect = 1e-33 Identities = 47/84 (55%), Positives = 72/84 (85%) Query: 54 RKLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEV 113 + +D IMDIPV +++E+GR++++I+ LL+L QGSVV LD +AGE LD+++NG LIA GEV Sbjct: 52 QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111 Query: 114 VVVNDKFGIRLTDVISQTERIKKL 137 VVV DK+G+R+TD+I+ +ER+++L Sbjct: 112 VVVADKYGVRITDIITPSERMRRL 135
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 250 bits (641), Expect = 2e-83 Identities = 89/326 (27%), Positives = 168/326 (51%), Gaps = 9/326 (2%) Query: 1 MTDLLSQDEIDALLHGVDSVDEEEEELPKSGP--SATNFDFSSQDRIVRGRMPTLELINE 58 MT++LSQDEID LL + S D E+ T +DF D+ + +M TL L++E Sbjct: 1 MTEVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHE 60 Query: 59 RFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTME 118 FAR SL LR V + V + + E+ ++ P++L ++ PLKG A++ ++ Sbjct: 61 TFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVD 120 Query: 119 ARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEY 178 + F +++ FGG G+ R+ T E V++ ++ + A+ +E+W+ V+ + Sbjct: 121 PSITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRL 178 Query: 179 LDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAG--VQSD 236 E NP A IV P+E++V+ + +V G + +PY +EPI L + S Sbjct: 179 GQIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSV 238 Query: 237 KMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVI---PIKMPEHAVMF 293 + + ++ LR+++ V ++ + + +++RD++ L+VGD+I + + V+ Sbjct: 239 RRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLS 298 Query: 294 VEELPTYRVKMGRSGEKLAVQVSEKI 319 + + + G G+K+A Q+ E+I Sbjct: 299 IGNRKKFLCQPGVVGKKIAAQILERI 324
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 56.0 bits (134), Expect = 2e-10 Identities = 79/351 (22%), Positives = 139/351 (39%), Gaps = 16/351 (4%) Query: 323 AEVSEALAASSQALKATPLTQSALNPASIMADEGLNQSTSATETGKVVIPWGTQMPTDNE 382 A +SEALA + KA P A + + + ++ S + ++IP P N+ Sbjct: 31 ALLSEALAGETTTDKAAPQLLVATDKPTTKGEPLISDIVSDAQQANLLIPVDETPPVIND 90 Query: 383 LAALTPELKAMLEEGGKAKAPVPNALAQSVAQGLTPAHLAAQQTGTTALPMNPTAATPID 442 + + L A A N A L A+ LP D Sbjct: 91 EQSTSTPLTTAQTMALAAVAD-KNTTKDEKADDLNEDVTASLSALFAMLPGFDNTPKVTD 149 Query: 443 IAALAPQTVAVNPMLNPAATVNPELAASSAMLAALGGRALAGSDERRAVSESGQEDLAQQ 502 AP TV L S + A A + + + A+ Sbjct: 150 ----APSTV-----LPTEKPTLFTKLTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEV 200 Query: 503 IAAAAGQGTAQNQALNRAESQLVQTNATPV---PLNKEMAADQLAERVQMMMSKNLKNID 559 I+ + A + + ++Q + T A PV PL L++ + + + ++ + Sbjct: 201 ISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAE 260 Query: 560 IRLDPPELGRMHIRMNMQGDGATVHFTVANQHAREALEQTMPRLREMLAQQGVQLGDTSV 619 +RL P +LG + I + + + A + +QH R ALE +P LR LA+ G+QLG +++ Sbjct: 261 LRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNI 320 Query: 620 QQQS-AGQQQRYTGQEQSGFGQSARNERLNSEENLDTDIKLDLNVATKRDG 669 +S +GQQQ + Q+QS ++A +E L E++ + + L + Sbjct: 321 SGESFSGQQQAASQQQQS--QRTANHEPLAGEDDDTLPVPVSLQGRVTGNS 369
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 39.8 bits (92), Expect = 1e-06 Identities = 31/133 (23%), Positives = 68/133 (51%) Query: 21 ALDFLLEQAQESEDKAVLALSKARSELDSYYHQLRQIEQYRLEYCQQLVERGKSGLTASQ 80 AL L + A++ + A L + R QL+ + Y+ EY L +G+T+++ Sbjct: 6 ALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAGITSNR 65 Query: 81 YGHLNRFLTQLDETLAKQKSAEQHFRLQVENCEQHWMNMRQKRKSYQWLMEKKQTERQLL 140 + + +F+ L++ + + + + +V+ W +Q+ +++Q L E++ T L Sbjct: 66 WINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQSTAALLA 125 Query: 141 QEKREQKQMDEFS 153 + + +QK+MDEF+ Sbjct: 126 ENRLDQKKMDEFA 138
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 66.7 bits (162), Expect = 2e-15 Identities = 48/190 (25%), Positives = 95/190 (50%), Gaps = 13/190 (6%) Query: 69 EEEIALIRTAAQQEGFEAGQAEGYQQGFEQGKAEGFQAGHQEGQTQGYQDGVAEGQALIQ 128 E+++A ++ A ++G++AG AEG QQG +Q G+QEG QG + G+AE ++ Sbjct: 41 EQQLAQLQMQAHEQGYQAGIAEGRQQGHKQ--------GYQEGLAQGLEQGLAEAKSQQA 92 Query: 129 EQVKTFMALANQFAQPLDLLNAQVEKQLVDMVLALTKEVVHVEVQTNPQVILDTVKASVE 188 L ++F LD L++ + +L+ M L ++V+ + ++ ++ ++ Sbjct: 93 PIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQ 152 Query: 189 ALPIAGHAITLKLNPEDVEIIRQAYGEQEIETRNWTLLSEPALSRGDVQIEAGE----SS 244 P+ L+++P+D++ + G + W L +P L G ++ A E +S Sbjct: 153 QEPLFSGKPQLRVHPDDLQRVDDMLGAT-LSLHGWRLRGDPTLHPGGCKVSADEGDLDAS 211 Query: 245 VSYRMEERIR 254 V+ R +E R Sbjct: 212 VATRWQELCR 221
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 283 bits (726), Expect = 3e-96 Identities = 107/330 (32%), Positives = 195/330 (59%) Query: 17 DISEIPGEEKAAILLLSLNEEDAAGIIRHLEPKQVQRVGSAMARAKDLSQTKVSAVHRAF 76 D+S + G++KAAILL+S+ E ++ + ++L ++++ + +A+ + ++ V F Sbjct: 11 DVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEF 70 Query: 77 LEDIQKYTNIGMGSEDFLRNALVAALGADKANNLVDQILLGTGSKGLDSLKWMDPRQVAS 136 E + I G D+ R L +LG KA ++++ + S+ + ++ DP + + Sbjct: 71 KELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILN 130 Query: 137 IIINEHPQIQTIVLSYLEPDQSAEILAQFAQRDALDLLMRIANLEEVQPSALAELNEIME 196 I EHPQ ++LSYL+P +++ IL+ ++ RIA ++ P + E+ ++E Sbjct: 131 FIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLE 190 Query: 197 KQFAGQAGAQAAKIGGLKAAADIMNYLDNNIESVLMEGMREKDEDLATQIQDLMFVFENL 256 K+ A + GG+ +I+N D E ++E + E+D +LA +I+ MFVFE++ Sbjct: 191 KKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDI 250 Query: 257 VEVDDQGIQKLLRDVPQDVLQKALKGADDTLREKIFKNMSKRAAEMMKDDLEAMPPIKVS 316 V +DD+ IQ++LR++ L KALK D ++EKIFKNMSKRAA M+K+D+E + P + Sbjct: 251 VLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRK 310 Query: 317 DVEAAQKEILSIARRMADNGEIMLGGGADE 346 DVE +Q++I+S+ R++ + GEI++ G +E Sbjct: 311 DVEESQQKIVSLIRKLEEQGEIVISRGGEE 340
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 290 bits (744), Expect = 3e-93 Identities = 159/556 (28%), Positives = 257/556 (46%), Gaps = 40/556 (7%) Query: 48 GDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELIPVLDYLDQQKQQY 106 L ++ L+++ S VA++V + W + PD R L ++ ++ L Q Y Sbjct: 17 NRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPY 76 Query: 107 KL--DGNTILVPVSDYNSLKLSMVRAGLNQNRQAGDEILMQDMGFGVSQRLEQERLKLSR 164 + I VP + L+L + + GL + G E+L FG+SQ EQ + + Sbjct: 77 RFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELL-DQEKFGISQFSEQVNYQRAL 135 Query: 165 ERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQEEIDAVVD 224 E +LA+ IE + V ARV LA+PK S+FVR + SASV +T+ G L + +I AVV Sbjct: 136 EGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVH 195 Query: 225 MVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRGKIDSVLIP 284 +V+SAV G+ P VT+ DQ G LL+ + + + E ++ +I+++L P Sbjct: 196 LVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDA-QLKFANDVESRIQRRIEAILSP 254 Query: 285 ILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVA-----GVPGA 339 I+G GN AQV +LDF+ EQT + + PN A+++ N V GVPGA Sbjct: 255 IVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGA 314 Query: 340 LSNQPPADASIP-----------QDVAQ---MKDGSVMGQGSVHKEATRNYELDTTISHE 385 LSNQP P Q+ Q + + G S + T NYE+D TI H Sbjct: 315 LSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHT 374 Query: 386 RKQSGVINRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLL 445 + G I R +VAV V D PL+ + I + +G+S+ RGD L Sbjct: 375 KMNVGDIERLSVAVVV--NYKTLADG---KPLPLTADQMKQIEDLTREAMGFSDKRGDTL 429 Query: 446 NVLSMPFAEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLVRPAMKKLINPAAD 505 NV++ PF+ + ++P W+ +F D + L++++V +L R K + P Sbjct: 430 NVVNSPFSAVD-NTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWR----KAVRPQLT 484 Query: 506 NDDQMYGPDGMPIGA--DGETSLIGSDIDGGELFEFGSGIDLPNLHKDEDVLKAVRALVA 563 + + E ++ +L + + L E + + +R + Sbjct: 485 RRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGA----EVMSQRIREMSD 540 Query: 564 NEPELAAQVVKNWMQN 579 N+P + A V++ WM N Sbjct: 541 NDPRVVALVIRQWMSN 556
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 62.4 bits (151), Expect = 3e-16 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 3/101 (2%) Query: 9 LDGLNNEMQAMMFEAMNTQPASTGQKVGADFGAMLTKAINNVNGLQKTSSDMQTRFDRGD 68 ++G+ +++QA A + F L A++ ++ Q + +F G+ Sbjct: 6 IEGVISQLQATAMSARAQESLPQPT---ISFAGQLHAALDRISDTQTAARTQAEKFTLGE 62 Query: 69 EGISLSDVMIARNKSSVAFEATIQVRNKLVEAYKELMNMPV 109 G++L+DVM K+SV+ + IQVRNKLV AY+E+M+M V Sbjct: 63 PGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 498 bits (1285), Expect = e-176 Identities = 169/486 (34%), Positives = 257/486 (52%), Gaps = 18/486 (3%) Query: 3 MAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGM 62 M + +L+ +DD +R L L+ AGY+ A + + D+VV+DV M Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 63 GGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSR--- 119 LL IK+ P+LPVL+M+A A+ A + GA DY+ KPF L+ ++ R Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 -------YAPVKSDDNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYI 172 S D V ++ + ++ +TD +MI G SG+GKE+++R + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 173 HNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEI 232 H+ R+ GPF+AIN AAIP +++E+ LFG+EKGAFTGA G+FEQA+GGT+ LDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 233 SEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRL 292 +M ++ Q +LLRVLQ+ E +G R I+ DVR++A +N+DLKQ + G FREDLYYRL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 293 NVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELD 352 NV PL P L +R +DI L H +++ K GL V A+ + +PWPGNVREL+ Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 353 NVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLV 412 N+V+R L I E I E + + + + + E Sbjct: 360 NLVRRLTALYPQDVITREIIENE----LRSEIPDSPIEKAAARSGSLSISQAVEENMRQY 415 Query: 413 QGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRD 472 ++ S L + E+ +IL L +G + + A+ LG++ TLR K+ ++ Sbjct: 416 FASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL-- 473 Query: 473 AGIDIP 478 G+ + Sbjct: 474 -GVSVY 478
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.003 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 20/99 (20%) Query: 246 LVMNALQ--IAGK--GSQIDVFFRPVNGELKISVQDNGPGVPESLQHKIMEPFFTTRSQG 301 LV N ++ IA G +I + NG + + V++ G ++ + + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------------ES 310 Query: 302 TGLGLA-VVQMVCRAHGG--RLELISKEGEGACFTMCIP 337 TG GL V + + +G +++L K+G+ + IP Sbjct: 311 TGTGLQNVRERLQMLYGTEAQIKLSEKQGKV-NAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 507 bits (1306), Expect = e-180 Identities = 189/494 (38%), Positives = 273/494 (55%), Gaps = 25/494 (5%) Query: 1 MQSLAKLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGGCILGSLR-GQ 59 M A +LV +DDAAIR L+ L G + + +A G ++ + Sbjct: 1 MTG-ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 60 ALSEQLIQSLTKAN-HIPLLVANKQPYSLEEFPNYV--GELDF---PLNYPQLSDALRHC 113 + L+ + KA +P+LV + Q + G D+ P + +L + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQN-TFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 114 KEFLGRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEV 173 R+ ++ ++ LVG+S +QE+ ++ ++ T+ ++I GESGTGKE+ Sbjct: 119 LAEPKRRPSKLEDDSQD---GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKEL 175 Query: 174 VARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTL 233 VAR +H + RRNGPFV IN AIP +L+ESELFGHEKGAFTGA T GRFE AEGGTL Sbjct: 176 VARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTL 235 Query: 234 FLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFRED 293 FLDEIGDMPM Q +LLRVLQ+ + VGG + I+++VR++AAT+++L++ I+ FRED Sbjct: 236 FLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFRED 295 Query: 294 LYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGNV 353 LYYRLNV P+ +P LRDR +DIP L++ + + E EG F A+ M H WPGNV Sbjct: 296 LYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNV 355 Query: 354 RELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAE 413 REL NLV R+ LYP ++ + + R S+IP+ E + S +E + Sbjct: 356 RELENLVRRLTALYPQDVITREIIENELR-SEIPDSPIEKAAARSGSLSISQAVEENMRQ 414 Query: 414 DFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMR 473 F ALPP G+ +LA++E LI AL A G +AAD+LG+ Sbjct: 415 YFA-----------SFGDALPPSGL-YDRVLAEMEYPLILAALTATRGNQIKAADLLGLN 462 Query: 474 RTTLVEKMRKYNMQ 487 R TL +K+R+ + Sbjct: 463 RNTLRKKIRELGVS 476
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 37.0 bits (85), Expect = 2e-04 Identities = 46/214 (21%), Positives = 81/214 (37%), Gaps = 20/214 (9%) Query: 199 KQLEYKTLEQRVRDLEKARAQAQQLIAPLTPEQQKVAAKVAEKIGDAARLVDQEVAQEIR 258 + E LE R +LEKA A + + + + A+ A + A L Q Sbjct: 251 LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNAN 310 Query: 259 SAAQSAQGAAGEALNAGELTESAVKAAANAASEAKKYIRPEDRIPGWTETASGTLLDSYW 318 + A E N SEA + D LD+ Sbjct: 311 RQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD-------------LDASR 357 Query: 319 EPEEELDAQGQKKAADVPGWSNTASGTLLDSYVTPQEAQQKLEQKLAQEKAQIEA----- 373 E +++L+A+ QK S + +L +EA++++E+ L + +++ A Sbjct: 358 EAKKQLEAEHQKLEEQN-KISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLN 416 Query: 374 -AIRSGKMTPEEAKAQARAKLSPEERAYIEQVEK 406 + K E+ KA+ +AKL E +A E++ K Sbjct: 417 KELEESKKLTEKEKAELQAKLEAEAKALKEKLAK 450
>FLAGELLIN#Flagellin signature. Length = 507 Score = 185 bits (471), Expect = 4e-56 Identities = 82/302 (27%), Positives = 138/302 (45%), Gaps = 5/302 (1%) Query: 2 AINVNTNVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRGL 61 A +NTN ++ Q LN + + ++ERLSSG +INSA+DDAAG I+NR TS +GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DMAVKNANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALND 121 A +NANDGISIAQT EGA+NE N LQR+R+L++Q++NG+NS S+ ++IQ+E+ + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELNRIAETTSFGGNKLLNGSFGSKSFQIGADSGEAVMLSMGSMRSDTQAMGGKSYRAQEG 181 E++R++ T F G K+L+ Q+GA+ GE + + + + + + G + + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 KAADWRVGA-ATDLTLSYTNKQGEAREVTINAKQGDDLEELATYINGQTEDVKASVGEDG 240 + V +N+ T + + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 KLQLFASSQKVNGDVTIGGGLGGEIGFDAGRNVTVA---DVNVSTVAGSQEAVSILDGAL 297 + + + G + A + D T + + +G + Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKV 299 Query: 298 KA 299 Sbjct: 300 ST 301 Score = 124 bits (313), Expect = 8e-34 Identities = 71/218 (32%), Positives = 101/218 (46%), Gaps = 20/218 (9%) Query: 178 AQEGKAADWRVGA-ATDLTLSYTNKQGEAREVTINAKQGDDLEEL-ATYINGQTEDVKAS 235 + G + +V ++ T A ++A + + + +NGQ + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 236 VGEDGKLQLFASSQKVNGDVTIGGGLGGEIGFDAGRNVTVA------------------D 277 E KL ++ V G+ I AG VT+A + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 278 VNVSTVAGSQEAVSILDGALKAVDSQRASLGAFQNRFGHAISNLDNVNENVNASRSRIRD 337 + + ++ +D AL VD+ R+SLGA QNRF AI+NL N N+N++RSRI D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 338 TDYARETTAMTKAQILQQASTSVLAQAKQSPSAALSLL 375 DYA E + M+KAQILQQA TSVLAQA Q P LSLL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>FLAGELLIN#Flagellin signature. Length = 507 Score = 191 bits (486), Expect = 3e-58 Identities = 89/297 (29%), Positives = 141/297 (47%), Gaps = 2/297 (0%) Query: 2 AVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGL 61 A +NTN ++ Q L + ++ +++ERLSSG +INSAKDDAAG I+NR +GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALND 121 A RNANDGISIAQT EGA+NE N LQR+R+LS+Q+ NG+NS S+ +IQ+EI + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAAEG 181 E++R++ T F G K+L+ Q+GA++GE + + L+ + + + G + + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQ-MKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 KDKDWKVQAGANDITFTLKDIDGNDQTITVNAKEGDDIEEVATYINGQTDMVKASVNEKG 241 + N + + N + VN+ T + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 242 QLQIFAGNNKVTGDVAFSGGL-AGALNMQAGTAETVDTIDVTSVGGAQQSVAVIDSA 297 + + + +G A A+ + DT D V + D Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Score = 125 bits (316), Expect = 3e-34 Identities = 81/326 (24%), Positives = 125/326 (38%), Gaps = 21/326 (6%) Query: 70 DGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALNDELNRIAET 129 + + + + R A +++ + V + + A N +L Sbjct: 183 GDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAE 242 Query: 130 TSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAAEGKDKDWKVQ 189 + + + + + A G D + G D + KV Sbjct: 243 NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKG--VTFTIDTKTGNDGNGKVS 300 Query: 190 AGANDITFTLKDIDGNDQTITVNAKEGDDIEE-VATYINGQTDMVKASVNEKGQLQIFAG 248 N TL D V+A + + +NGQ + NE +L Sbjct: 301 TTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEA 360 Query: 249 NNKVTGDVAFSGGLAGALNMQAGTAETVD------------------TIDVTSVGGAQQS 290 NN V G+ + A AG T+ + Sbjct: 361 NNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANP 420 Query: 291 VAVIDSALKYVDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTALTK 350 +A IDSAL VD+ R+ LGA QNRF+ AI+NL N N+N+++SRI+D D+A E + ++K Sbjct: 421 LASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSK 480 Query: 351 SQILSQASSSVLAQAKQAPNAALSLL 376 +QIL QA +SVLAQA Q P LSLL Sbjct: 481 AQILQQAGTSVLAQANQVPQNVLSLL 506
>FLAGELLIN#Flagellin signature. Length = 507 Score = 206 bits (525), Expect = 5e-64 Identities = 89/297 (29%), Positives = 142/297 (47%), Gaps = 2/297 (0%) Query: 2 AMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRGL 61 A +NTN +L+ Q +LN + L+ ++ERLSSG RINSAKDDAAG I+NR + ++GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALND 121 A RNANDGISI QT EGA+ E LQR+R+LS+Q+ NG+NS ++ ++Q+E+ + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELNRIAETTSFAGRKLLNGQFMKASFQIGASSGEAVQLSLRNMRSDSLEMGGFSYVAAAL 181 E++R++ T F G K+L+ + Q+GA+ GE + + L+ + SL + GF+ Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 ADKQWQVTKGKQQLNISYVNAQGENENIQIQAKEGDDIEELATYINGKTDKVSASVNEKG 241 A + K + + + T + + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 242 QLQLYIAGKETSGTLSFSGSL-ANELQMNLLGYEAVDNLDISSAGGAQRAVSVIDTA 297 + A T S +G+ A + + G + D D + D Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Score = 129 bits (325), Expect = 2e-35 Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 19/219 (8%) Query: 178 AAALADKQWQVTKGKQQLNISYVNAQGENENIQIQAKEGDDIEEL-ATYINGKTDKVSAS 236 D +V+ ++ A + A + + + +NG+ + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 237 VNEKGQLQLYIAGKETSGTLSFSGSLANELQMNLLGYEAVD------------------N 278 NE +L A G + + A + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 279 LDISSAGGAQRAVSVIDTALKYVDGHRSELGAMQNRFQHAISNLDNVHENLAASNSRIKD 338 ++ ++ ID+AL VD RS LGA+QNRF AI+NL N NL ++ SRI+D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 339 ADYAKETTQMIKQQILQQVSTSVLAQAKRQPKFVLFLLR 377 ADYA E + M K QILQQ TSVLAQA + P+ VL LLR Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.002 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 8/82 (9%) Query: 4 TTLIPSEQTQQEALKIAKATQRPGQTKEQTKLITQGIEKGIALYKKQQKEKHRQADKLRK 63 TT +E ++QE+ + K Q +T Q + +A K + + Q +++ + Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNRE--------VAKEAKSNVKANTQTNEVAQ 1087 Query: 64 KALKAKQSSTEEIHEADDYAAE 85 + K++ T E E E Sbjct: 1088 SGSETKETQTTETKETATVEKE 1109
>FLAGELLIN#Flagellin signature. Length = 507 Score = 191 bits (485), Expect = 4e-58 Identities = 87/297 (29%), Positives = 137/297 (46%), Gaps = 2/297 (0%) Query: 2 AVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRGL 61 A +NTN ++ Q L + ++ S++ERLSSG +INSAKDDAAG I+NR +GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALND 121 A RNANDGIS+AQT EGA+ E N LQR+R+LS+Q+ NG+NS +D +IQ+EI + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELNRVAETTSFGGNKLLNGTFATKSFQIGADNGEAVMLNIKDMRSDNALMGGKTYQAANG 181 E++RV+ T F G K+L+ Q+GA++GE + ++++ + + + G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 182 KDKNWGVEAGKTDLTITLKDKREGDVTISINAKEGDDIEELATYINGQTDMIKASVDEEG 241 + K + +N+ T + Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 242 KLQLFTDNNRIDGAATFGGALAGELGIGAAQDVTV-DTLDVTTVGGAQESVAIVDAA 297 + T + + G + GA + DT D V ++ D Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Score = 127 bits (320), Expect = 1e-34 Identities = 76/339 (22%), Positives = 123/339 (36%), Gaps = 25/339 (7%) Query: 57 QSRGLGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEI 116 + V + + + ++ + + + D+V + Sbjct: 174 VNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKV----YV 229 Query: 117 TALNDELNRVAETTSFGGNKLLNGTFATKSFQIGADNGEAVMLNIKDMRSDNALMGGKTY 176 A N +L + + + + A G D T Sbjct: 230 NAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKG--VTFTI 287 Query: 177 QAANGKDKNWGVEAGKTDLTITLKDKREGDVTISINAKEGDDIEEL-ATYINGQTDMIKA 235 G D N V +TL +++A + + + +NGQ Sbjct: 288 DTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDK 347 Query: 236 SVDEEGKLQLFTDNNRIDGAATFGGALAGELGIGAAQDVTVD------------------ 277 + +E KL NN + G + A A VT+ Sbjct: 348 TKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLIN 407 Query: 278 TLDVTTVGGAQESVAIVDAALKYVDSHRAELGAFQNRFNHAINNLDNINENVNASKSRIK 337 +A +D+AL VD+ R+ LGA QNRF+ AI NL N N+N+++SRI+ Sbjct: 408 EDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIE 467 Query: 338 DTDFAKETTALTKAQILSQASSSVLAQAKQAPNSALALL 376 D D+A E + ++KAQIL QA +SVLAQA Q P + L+LL Sbjct: 468 DADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>FLAGELLIN#Flagellin signature. Length = 507 Score = 194 bits (493), Expect = 3e-59 Identities = 85/297 (28%), Positives = 135/297 (45%), Gaps = 2/297 (0%) Query: 3 INVNTNVSAMTAQRYLTKATGELNTSMERLSSGNRINSAKDDAAGLQISNRLTAQSRGLD 62 +NTN ++ Q L K+ L++++ERLSSG RINSAKDDAAG I+NR T+ +GL Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 63 VAMRNANDGISIAQTAEGAMNESTSILQRMRDLALQSANGTNSASERQALNEESVALQDE 122 A RNANDGISIAQT EGA+NE + LQR+R+L++Q+ NGTNS S+ +++ +E +E Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 123 LNRIAETTSFGGRKLLNGSFGEASFQIGSSSGEAIIMGLTSVRADDFRMGGQSFIAEQPK 182 ++R++ T F G K+L+ Q+G++ GE I + L + + G + + Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQ-MKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEA 180 Query: 183 TKEWGVPPTARDLKFEFTKKDGEAVVLDIIAKDGDDIEELATYINGQTDLFKASVDQEGK 242 T ++ +D+ + T + Sbjct: 181 TVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDD 240 Query: 243 LQIFVAEPNIEGNFNISGGLATELGLNGGPGVKTTVQDIDITSVGGSQNAVGIIDAA 299 + A + + G A + G D V + + D Sbjct: 241 AENNTAVDLFKTT-KSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Score = 140 bits (353), Expect = 3e-39 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 17/219 (7%) Query: 178 AEQPKTKEWGVPPTARDLKFEFTKKDGEAVVLDIIAKDGDDIEEL-ATYINGQTDLFKAS 236 + V T K T D A ++ A + + + +NGQ + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 237 VDQEGKLQIFVAEPNIEGNFNISGGLATELGLNGG----------------PGVKTTVQD 280 ++ KL A ++G I+ A G GV T + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 281 IDITSVGGSQNAVGIIDAALKYVDSQRADLGAKQNRLSHSISNLSNIQENVEASKSRIKD 340 + + N + ID+AL VD+ R+ LGA QNR +I+NL N N+ +++SRI+D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 341 TDFAKETTQLTKSQILQQAGTSILAQAKQLPNSAISLLQ 379 D+A E + ++K+QILQQAGTS+LAQA Q+P + +SLL+ Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 29.2 bits (65), Expect = 0.031 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 3/133 (2%) Query: 243 GSVVQAGEFDAKTGIQFEELNIQVKGQISKGDAIELTPRTTFSVFDTFRDAIRYAEGSVS 302 + +A G +N + GD + L +T F + E + + Sbjct: 353 AKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAA 412 Query: 303 DASNTAKLHQLVEEFHTAFIHLNKTRTDIGARLSTLDIQEEQHEDFKISLAKSKSTFEDL 362 +TA ++ +A ++ R+ +GA + D + +L ++S ED Sbjct: 413 AKKSTANPLASID---SALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDA 469 Query: 363 DYAEAVIEFNENS 375 DYA V ++ Sbjct: 470 DYATEVSNMSKAQ 482
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 537 bits (1384), Expect = 0.0 Identities = 122/455 (26%), Positives = 211/455 (46%), Gaps = 19/455 (4%) Query: 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62 S L+N + AQ LNT +NIS+ N GY+RQ+ I G G GV+V Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 63 NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKKIPENLNEWFDSVKSL 122 V+R +D F +L A T + E + + +LS+ ++ + + ++F S+++L Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST-STSSLATQMQDFFTSLQTL 119 Query: 123 ADSPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDLQ 182 + D AR+ ++ KS+ + + +R Q N + V++IN A +I L Sbjct: 120 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 179 Query: 183 RLMMRVPG-----PHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGT 237 + R+ G N+L+D+ ++LVSEL+Q V V+ + G +NI + NG++LV G+ Sbjct: 180 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGT-YNITMANGYSLVQGS 238 Query: 238 EASQLRVIDGFPDTQQHRLAMVEGKALKAISARDI--GGKMEAILDMRDEHIPYLMDEVG 295 A QL + D + +A V+G A + G + IL R + + + +G Sbjct: 239 TARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLG 298 Query: 296 RLALSFSHEVNTLQSQGLDLRGNVGSALFTDVNLDVIARSRVVTNSNSKADMAV--FIED 353 +LAL+F+ NT G D G+ G F I + V+ N+ +K D+A+ + D Sbjct: 299 QLALAFAEAFNTQHKAGFDANGDAGEDFFA------IGKPAVLQNTKNKGDVAIGATVTD 352 Query: 354 VSQLKGGEYSMQYNGSEFVVTLPSGQ--QTVLPVVKGNVYVDGLRVEVRNPPQVGERILV 411 S + +Y + ++ +++ VT + TV P G V DGL + P V + + Sbjct: 353 ASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTL 412 Query: 412 RPTRNGAAAIRLATEDATKIAAQSFEASTTFAQGK 446 +P + + + D KIA S E + Sbjct: 413 KPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRN 447 Score = 145 bits (367), Expect = 3e-39 Identities = 32/105 (30%), Positives = 61/105 (58%) Query: 520 EGDNGNLRKMINIQTAKRMNDNESTIIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQS 579 + DN N + ++++Q+ + + D Y +L +D+G K AT+ + + Sbjct: 442 DSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSN 501 Query: 580 RIASISGVNLDEEAANMMKFQQAYMASSRIIQASNDTFNTILALR 624 + SISGVNLDEE N+ +FQQ Y+A+++++Q +N F+ ++ +R Sbjct: 502 QQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 401 bits (1031), Expect = e-143 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 15/299 (5%) Query: 13 DIAGLDKLRQKAVNGDENAGQSALTAAARQFESIFTSMMLKSMRDANSDFKSDLMSSQNE 72 D L++L+ KA G++ A + ARQ E +F MMLKSMRDA K L SS++ Sbjct: 14 DAQSLNELKAKA--GEDPAAN--IRPVARQVEGMFVQMMLKSMRDALP--KDGLFSSEHT 67 Query: 73 DLYRQMLDEQMASEFSSSGSLGLADMIVAQLSTGQTASEQKGEDGFQEAMRRVEHARKTA 132 LY M D+Q+A + ++ LGLA+M+V Q++ Q E+ ++ +T Sbjct: 68 RLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEE------STPAAPMKFPLETV 121 Query: 133 SERSNEDLVAAVYPLRKTQAVQSTQFDSRHSFVTKLKPYADKAARMLGVDSSLLIAQAAL 192 N+ L V S DS+ +F+ +L A A++ GV L++AQAAL Sbjct: 122 VRYQNQALSQLVQKAVPRNYDDSLPGDSK-AFLAQLSLPAQLASQQSGVPHHLILAQAAL 180 Query: 193 ETGWGQKMVKNARGN-SNNLFNIKADRSWQGDKVATQTLEYHNNVPVVEKAAFRSYASFD 251 E+GWGQ+ ++ G S NLF +KA +W+G T EY N KA FR Y+S+ Sbjct: 181 ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL 240 Query: 252 ESFNDYVRFLENNPRYTNALDHGGNSERFIHGIHRAGYATDPQYADKVLRVKAQIDQMN 310 E+ +DYV L NPRY A+ ++E+ + AGYATDP YA K+ + Q+ ++ Sbjct: 241 EALSDYVGLLTRNPRYA-AVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSIS 298
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 425 bits (1094), Expect = e-151 Identities = 155/360 (43%), Positives = 221/360 (61%), Gaps = 12/360 (3%) Query: 8 LMLLLASSAQAARIKDVAQVAGVRNNQLVGYGLVTGLPGTGES---TPFTDQSFNAMLQS 64 + + A +RIKD+A + R+NQL+GYGLV GL GTG+S +PFT+QS AMLQ+ Sbjct: 18 FLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQN 77 Query: 65 FGIQLPPGTKPKTKNVAAVIVTADLPAFSKQGQTIDITVSSIGSAKSLRGGTLMQTFLKG 124 GI G KN+AAV+VTA+LP F+ G +D+TVSS+G A SLRGG L+ T L G Sbjct: 78 LGITTQGGQ-SNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSG 136 Query: 125 LDGQVYAVAQGNLVVSGFSATGADGSKIVGNNPTVGMISSGAIVEREVPNPFGRGDYITF 184 DGQ+YAVAQG L+V+GFSA G D + + T + +GAI+ERE+P+ F + Sbjct: 137 ADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVL 195 Query: 185 NLFESDFTTAQRLADAVNQF----LGPQMASAVDAASIKVRAPRDLSQRVAFLSAIENLE 240 L DF+TA R+AD VN F G +A D+ I V+ PR ++ ++ IENL Sbjct: 196 QLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VADLTRLMAEIENLT 254 Query: 241 FNPADSAAKIIVNSRTGTIVVGQNVRLKPAAVTHGGMTVAIKENLNVSQPNALGGGQTVV 300 D+ AK+++N RTGTIV+G +VR+ AV++G +TV + E+ V QP GQT V Sbjct: 255 VET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAV 313 Query: 301 VPNTEIEVTEKQGKMFKLEPGVTLDDLVRAVNEVGAAPSDLMAILQALKQAGAIEGQLII 360 P T+I ++ K+ +E G L LV +N +G ++AILQ +K AGA++ +L++ Sbjct: 314 QPQTDIMAMQEGSKVAIVE-GPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQAELVL 372
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 136 bits (344), Expect = 1e-41 Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 16/205 (7%) Query: 68 AWAPIHP--------KGKPEHYAAETGSLFNLASSS-----SMYDDSKPRGVGDIITVTL 114 AW P P + P GS+F A +++D +PR +GD +T+ L Sbjct: 23 AWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVL 82 Query: 115 NESTKAAKSADADLNKKNDASMDPLAVGGKDLTIGDYNFSYALK--NDNKFSGSAAANQS 172 E+ A+KS+ A+ ++ + V + L N ++ N F+G AN S Sbjct: 83 QENVSASKSSSANASRDGKTNFGFDTVP-RYLQGLFGNARADVEASGGNTFNGKGGANAS 141 Query: 173 NSMSGSITVEVIEVLANGNLVIRGEKWLTLNTGDEYIRLSGTIRPDDIDFDNTIASNRIS 232 N+ SG++TV V +VL NGNL + GEK + +N G E+IR SG + P I NT+ S +++ Sbjct: 142 NTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVA 201 Query: 233 NARIQYSGTGTNQDMQEPGFLARFF 257 +ARI+Y G G + Q G+L RFF Sbjct: 202 DARIEYVGNGYINEAQNMGWLQRFF 226
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 43.4 bits (102), Expect = 5e-07 Identities = 10/46 (21%), Positives = 20/46 (43%) Query: 215 IRQSMLETSNVNVTEELVNMIEAQRVYEMNSKVISAVDKMMSFVNQ 260 + S VN+ EE N+ Q+ Y N++V+ + + + Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 38.4 bits (89), Expect = 2e-05 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 14/77 (18%) Query: 5 LWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGAQSSQNTRLPS 64 + + +GL+A Q + T SNN+++ + G+ + + + N+ L + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI--------------MAQANSTLGA 49 Query: 65 GLMLGAGSKVVATQKVH 81 G +G G V Q+ + Sbjct: 50 GGWVGNGVYVSGVQREY 66
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 39.6 bits (92), Expect = 2e-05 Identities = 15/33 (45%), Positives = 21/33 (63%) Query: 3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESR 35 ++SGL+AAQ LNT SNNI++ N G+ Sbjct: 5 NNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37 Score = 36.1 bits (83), Expect = 3e-04 Identities = 12/49 (24%), Positives = 26/49 (53%) Query: 386 SISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQIR 434 +SN S +++ +E +L Q+ + AN++ L+ N + ++ IR Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 32.2 bits (73), Expect = 5e-04 Identities = 10/33 (30%), Positives = 15/33 (45%) Query: 98 SNVNVMEEMANMISASRSYQTNVQVADASKQML 130 S VN+ EE N+ + Y N QV + + Sbjct: 507 SGVNLDEEYGNLQRFQQYYLANAQVLQTANAIF 539
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.9 bits (158), Expect = 7e-14 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 11/125 (8%) Query: 183 RILIADDSSVARKQVQRAIESIGFEVVTTKDGKDAYEKLLEMLSEGPISNQISLVISDIE 242 IL+ADD + R + +A+ G++V T + ++ G LV++D+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATL----WRWIAAG----DGDLVVTDVV 56 Query: 243 MPEMDGYTLTAEIRRHNELKDLYVILHSSLSGVFNQAMVERVGANAFIAK-FNPDELGNA 301 MP+ + + L I++ DL V++ S+ + GA ++ K F+ EL Sbjct: 57 MPDENAFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 302 VKAAL 306 + AL Sbjct: 115 IGRAL 119
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 229 bits (586), Expect = 4e-81 Identities = 92/143 (64%), Positives = 110/143 (76%), Gaps = 4/143 (2%) Query: 1 MKKMRKQTGFTLLEVMVVVVILGILASFVVPNLLGNKEKADQQKAVTDIVALENALDMYK 60 M+ KQ GFTLLE+MVV+VI+G+LAS VVPNL+GNKEKAD+QKAV+DIVALENALDMYK Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK 60 Query: 61 LDNSVYPTTDQGLEALVTKPT-NPEPRNYREGGYIKRLPKDPWGNDYQYLSPGDKGTIDV 119 LDN YPTT+QGLE+LV PT P NY + GYIKRLP DPWGNDY ++PG+ G D+ Sbjct: 61 LDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDL 120 Query: 120 FTLGADGQEGGEGTGADIGNWNI 142 + G DG+ G E DI NW + Sbjct: 121 LSAGPDGEMGTED---DITNWGL 140
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 564 bits (1455), Expect = 0.0 Identities = 223/407 (54%), Positives = 300/407 (73%), Gaps = 2/407 (0%) Query: 1 MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60 MA + Y+ALDA+G+ +G E D+ARQ RQ L+E+ LVP+ V E + +S S G + + Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 RG--ISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTL 118 R +ST DLAL+TRQLATLV + MPLEE L AVA+QSEKP + ++ AVR+KV EG++L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 119 SDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLV 178 +D++ +P F+ L+ +MVAAGE SGHLD+VL RLADY E RQ+MRS++QQAMIYP VL Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 238 V A+ +V+ LL+ VVPK+V QF+ M QALP ST+ L+ SD ++ +G +L+ LL Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 239 VRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDV 298 R +L + R+ + RR++ LP+IG+IARGLNTAR+ARTLSI +SA+P+L MR++ DV Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 299 MTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADN 358 M+N + + ++ A + VREG SL KALEQT LFPPMM HMIASGE+SGEL+ ML RAADN Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 359 QDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405 QD F S + +ALG+F P L+ MA +VLFIV+A L PIL++N LMS Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLMS 407
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 341 bits (875), Expect = e-120 Identities = 93/305 (30%), Positives = 146/305 (47%), Gaps = 37/305 (12%) Query: 1 MEFKQLPPLAAWPRLLSQNTLRWQKPISEGLTLLLLVASAWTLGKMVWVVSAEQTPVPTW 60 M +LPPL+ I L LL++ L + W + P Sbjct: 1 MNISKLPPLSP-------------SVIRRILFYLLMLLFCQQLAMIFWRIGLPDN-APVS 46 Query: 61 SPTLSGLKAERQPLDISVLQKGELFGVFTEPKEAPVVEQPVVVDAPKTRLSLVLSGVVAS 120 S ++ +A +QP+ L LFGV E +A ++ + + P + L+L L+GV+A Sbjct: 47 SVQITPAQARQQPV---TLNDFTLFGVSPEKNKAGALDASQMSNLPPSTLNLSLTGVMAG 103 Query: 121 NDAQKSLAVIANRGVQATYGINEVIEGTQAKLKAVMPDRVIISNSGRDETLMLEGLDYTA 180 +D +S+A+I+ Q + G+NE + G AK+ ++ PDRV++ GR E L L Y+ Sbjct: 104 DDDSRSIAIISKDNEQFSRGVNEEVPGYNAKIVSIRPDRVVLQYQGRYEVLGL----YSQ 159 Query: 181 PATASVSNPPRPRPNQPNAVPQFEDKVDAIREAIARNPQEIFQYVRLSQVKRDDKVLGYR 240 + + VP + + R + YV S + D+K+ GYR Sbjct: 160 EDSG------------SDGVPGAQVN----EQLQQRASTTMSDYVSFSPIMNDNKLQGYR 203 Query: 241 VSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQHD 300 ++PG F +GLQD DMAVALNGLDL D + M ++ +LTVERDGQ+ D Sbjct: 204 LNPGPKSDSFYRVGLQDNDMAVALNGLDLRDAEQAKKAMERMADVHNFTLTVERDGQRQD 263 Query: 301 VYIQF 305 +Y++F Sbjct: 264 IYMEF 268