>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 56.9 bits (137), Expect = 4e-11 Identities = 49/257 (19%), Positives = 89/257 (34%), Gaps = 48/257 (18%) Query: 52 NSDSSAVDSNSVANTSTS---TAKTTKTVSLKVTTDITKAVEKTEKAVVGVSNIQKQSIW 108 N+ SS N T +S T K K +LK +E+ E A V + N + I Sbjct: 28 NALSSKAMDNHPQQTQSSKQQTPKIQKGGNLK-------PLEQREHANVILPNNDRHQIT 80 Query: 109 SDDMFGQDSKSSSSSSQEAGSGSGIIYKKAGDKAYVVTNYHVIEGANALEVTLS------ 162 + G+ D ++TN HV++ + L Sbjct: 81 DTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDT--LLTNKHVVDATHGDPHALKAFPSAI 138 Query: 163 ------NGKKLSAKLVGGDKYTDLAVLQI-------DGSNVTTVAQFGDSDALKLGESVI 209 NG + ++ DLA+++ V A ++ ++ +++ Sbjct: 139 NQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNIT 198 Query: 210 AIGNPLGEEFAG-SVTEGIVSGLNRTVPVDIDEDGTEDWQEEVIQTDAAINPGNSGGALI 268 G P + A ++G ++ L + E +Q D + GNSG + Sbjct: 199 VTGYPGDKPVATMWESKGKITYL----------------KGEAMQYDLSTTGGNSGSPVF 242 Query: 269 NISGQVVGINSMKISNE 285 N +V+GI+ + NE Sbjct: 243 NEKNEVIGIHWGGVPNE 259
>PF05272#Virulence-associated E family protein Length = 892 Score = 25.0 bits (54), Expect = 0.006 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 3/36 (8%) Query: 2 DWFQAIRLTQFKPHVGTCNESKVENVLKREFDQQKE 37 +F+ Q V T + ++ +L RE E Sbjct: 752 IYFRP---EQELRLVETGVQGRLWALLTREGAPAAE 784
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.5 bits (66), Expect = 0.020 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 8/107 (7%) Query: 127 KLNKELEQIENRLLEIQQLQDKYMEAFEKNTLPIDILQERLQKVSNEKRELEQKKNEITL 186 L++ +N +Q KY + K + + E+L + E L I Sbjct: 372 TLDENKTPSQN----VQSYYKKYNKL--KKSE--EAANEQLLQNEEELNYLYSVLTNINN 423 Query: 187 HLSSSDSKVIQPELIELLLEKFLFVYKQTSRENQKQLLQLLIDKITI 233 + + + I+ ELIE KF +YK + K + + D I I Sbjct: 424 ADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDI 470
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.002 Identities = 39/209 (18%), Positives = 81/209 (38%), Gaps = 13/209 (6%) Query: 195 LPSNKKIAILVYTLGILIGMNLGLVQPYLPIILKEVGQFN--ISFVSTLMTIVSVVQMLS 252 + N+ + +++ T+ L + +GL+ P LP +L+++ N + L+ + +++Q Sbjct: 1 MKPNRPLIVILSTVA-LDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFAC 59 Query: 253 SLFF--RNKKMNQRPNIFF-LIIELVIFIIFTFTGVMDLRHMIIIPVFLFAIL-ITGFQI 308 + + + +RP + L V + I + ++ I + I TG Sbjct: 60 APVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL---WVLYIGRIVAGITGATGAVA 116 Query: 309 VREIMEYTMFPAEELTLYLGIVQSSVLVGDSVGGPVGGYLYNLSISMLFIVFAILNLIIG 368 I + T +E + G + + G G +GG + S F A LN + Sbjct: 117 GAYIADIT--DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNF 174 Query: 369 IGYTIIYSIHSKYNKRIALSQEIDHTLTK 397 + S +R L +E + L Sbjct: 175 L-TGCFLLPESHKGERRPLRREALNPLAS 202
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 70.4 bits (172), Expect = 3e-17 Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 8/197 (4%) Query: 18 EKRRNQMINAAVALFKEKGFHRTTTREIAKKSGFSIGTLYEYIRAKEDVLYLVCDRIYDE 77 ++ R +++ A+ LF ++G T+ EIAK +G + G +Y + + K D+ + + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 78 VRDRLIRIDAGQG--TLESLKLAIAHYFR-IVDELQDEVLVMYQEAKSLTKEALPYVLKK 134 + + + A L L+ + H V E + +L+ K + V + Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 135 E----MEMVGIFEKMIRKCAENGELDLDEKEMEMLAHNIFVQGEMWAFRRWAFKKKFTIE 190 + +E E+ ++ C E L D A + + F ++ Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADL-MTRRAAIIMRGYISGLMENWLFAPQSFDLK 188 Query: 191 DYIRLQTHLLFSGLETR 207 R +L Sbjct: 189 KEARDYVAILLEMYLLC 205
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 31.1 bits (70), Expect = 0.031 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 20/171 (11%) Query: 686 DQQVKKKEAELGRVLTVEEFTEVREKTLQTVRGTV-QADILK----EDQGQNTCIFSTE- 739 DQ V + G++++V+ T+V + T+ T G V QA + + Q + T Sbjct: 49 DQGVPA--SGQGKLISVK--TDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSP 104 Query: 740 --FALRMMGDIQQYFID---HKVRNYYSVSISGYHIAEAGANPISQLAFTLANGFTYVEY 794 G + D + R Y+V Y +AE + +T A G T+ + Sbjct: 105 QFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKT 164 Query: 795 YLGRGMKVDDFAPNLSFFFSN--GLDPEYTVIGRVARRIWAVVMRDLYGAN 843 ++ +K D+A N+++ N E + G++ + I D +N Sbjct: 165 FV---LKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSN 212
>PF03309#Bvg accessory factor Length = 271 Score = 30.5 bits (69), Expect = 0.021 Identities = 12/70 (17%), Positives = 24/70 (34%) Query: 617 PSVEIKKDDFIILMDTQTAVKSGLFHGFNELEIYTKKDISHKEKMNLDKQVKSLSSTFPG 676 VE+ + +I +T +++G GF L I V +++ Sbjct: 171 RRVELTRPRSVIGKNTVECMQAGAVFGFAGLVDGLVNRIRDDVDGFSGADVAVVATGHTA 230 Query: 677 SLVQNTSQLI 686 LV + + Sbjct: 231 PLVLPDLRTV 240
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 107 bits (270), Expect = 7e-31 Identities = 35/121 (28%), Positives = 62/121 (51%) Query: 1 MREPNILIVDDQFGIRVLLTEVLQKEGYETFQAANGPQALSLAANHEIDLVLLDMKIPGM 60 M IL+ DD IR +L + L + GY+ +N A + DLV+ D+ +P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGIEILKKLKEMKPDIRAIIMTAYGELDLIEKAKELGALTHFAKPFDIDDIRKAVKKYLA 120 + ++L ++K+ +PD+ ++M+A KA E GA + KPFD+ ++ + + LA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 M 121 Sbjct: 121 E 121
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.005 Identities = 37/225 (16%), Positives = 66/225 (29%), Gaps = 23/225 (10%) Query: 8 EAAALASARWMGRGLKDEADDAATSAMRDVFDTIPMKGTVVIGEGEMDEAPMLYIGEKLG 67 + +A A G G D+ +D + D + ++G ++ L L Sbjct: 407 DPSAGAGTDPGGPGGGDDGEDPFGEWLDDEVARLRLRGRWLLKPRRAALIEALRSAPALA 466 Query: 68 -----NGYGPRVDIAVD-PLEGTNILASGGWNALSVLAIAD-----HGHLLHAPDMYMDK 116 + + P G VL +AD +G + Sbjct: 467 GCVAFDELREQPVAVRAFPWRKA----PGPLEDADVLRLADYVETTYGTGEASAQTTEQA 522 Query: 117 IAVGPEAVGMIDINAPIIDNLKAVAKAKNKDIEDVVATVLNRPRHEEIIAQLRAAGARIK 176 I ++ P D +KA + +E + VL + + +LR K Sbjct: 523 I----NVAADMNRVHPFRDWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGK 578 Query: 177 LINDGDVAAAINTAFDHTGVDILFGSGGAPEGVISAVALKCLGGE 221 I G VA + +L G G+ + + L G Sbjct: 579 YILMGHVARVMEPGCKFDYSVVLEG----TGGIGKSTLINTLVGL 619
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 31.2 bits (70), Expect = 0.002 Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 105 GTMLFALSVSLDSFSAGLSLGIFGVRTVAVMICFGVAATFLTWLGLLIG 153 + + L S AG +LGI+G+ V ++C + L + ++G Sbjct: 473 DAGVSYVVALLFSLLAGTTLGIWGIAIVTGILCSYIDKNKLNTINEVLG 521
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.9 bits (64), Expect = 0.046 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%) Query: 327 EEVHRGQKANEAMDRMTESIHL-VAGAVDQIAGMAKNQMDAIHEASSQSQEV-AAITEQT 384 +EV + QK E R E + V ++ +G KN+M+A +A+SQ E+ A I ++ Sbjct: 605 DEVKKAQKDLEKSLRKREHLEKEVEKKLESKSG-NKNKMEAKAQANSQKDEIFALINKEA 663 Query: 385 SAGAKEVTAITNEQAQNMELIERL 408 + A+ + N + EL ++L Sbjct: 664 NRDARAIAYAQNLKGIKRELSDKL 687
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 25.2 bits (55), Expect = 0.030 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 6/61 (9%) Query: 1 MQNNIKKYRKKKQMSQEE------LAKKCNVTRQTINAIENSKYDPSLRLAVLISQILEV 54 + I +Y ++ + L K + + + EN + L V SQ+ ++ Sbjct: 219 VLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQI 278 Query: 55 R 55 Sbjct: 279 E 279
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 122 bits (308), Expect = 7e-33 Identities = 76/353 (21%), Positives = 152/353 (43%), Gaps = 16/353 (4%) Query: 10 GRFGDLFGIRQLFSIGIVLFTISSLLCGLSTSPLELIVF-RAIEGLGAALLLPQTMTFII 68 G+ D GI++L GI++ S++ + S L++ R I+G GAA M + Sbjct: 70 GKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVA 129 Query: 69 RLFPSERRGTALGIWGMVGGVAAVAGPSLGGFIVSVLGWRWIFYINVPIGVLIFIFTYLF 128 R P E RG A G+ G + + GP++GG I + W ++ +P+ +I + + Sbjct: 130 RYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPMITIITVPFLMK 187 Query: 129 VPEIRNSAKQQLDLMGVLLVSLSCLFLTYGLIEGQHFKWSMYIVGILIISVVIFIIFYVQ 188 + + K D+ G++L+S+ +F + Y + LI+SV+ F+IF Sbjct: 188 LLKKEVRIKGHFDIKGIILMSVGIVFFMLFT--------TSYSISFLIVSVLSFLIFVKH 239 Query: 189 QKLRHKRDPLIPFALFEDRNYTLMNVVGVFFSIGVLGLMLLLSIYFQSILGYDAFRAG-L 247 R DP + L ++ + + + G V G + ++ + + G + Sbjct: 240 I--RKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSV 297 Query: 248 TLVPASLISMCVSPFAGKFSNKIGGKYLVLAGLALTLIGMIWVIFIMNGHNYWVQFMLSM 307 + P ++ + G ++ G Y++ G+ + + F++ ++++ ++ Sbjct: 298 IIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVF 357 Query: 308 VITGFGNGLLISPTAAVAVKEVKDEVAGAASGVMNTVRQLGTVGGSAAVGALL 360 V+ G + T + +K + AGA ++N L G A VG LL Sbjct: 358 VLGGLSFTKTVIST--IVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 98.6 bits (245), Expect = 2e-26 Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 13/253 (5%) Query: 53 LSNKVAIISGGDSGIGRAVAVAFAKEGADIVIAYFDEHEDAMETKQAIEHLGQRCLLIPG 112 + K+A I+G GIG AVA A +GA + A E + +++ + P Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAH-IAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 113 DLRNKNHCQYVIACTLETFGKIDVLVNNLAVQFVQNRFLDISDEQWHTTFDTNLHPFFYM 172 D+R+ + A G ID+LVN V +SDE+W TF N F Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 173 TKAALPYMA--EGSSIINTASINAYIGRKDLIDYTATKGAIVSFTRALANNIVDQGIRVN 230 +++ YM SI+ S A + R + Y ++K A V FT+ L + + IR N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 231 AVAPGPIWTPLIPATFSPD---------MVKTFGNNVPMKRAGQPYELAPVYVLLASNDG 281 V+PG T + + ++ + ++TF +P+K+ +P ++A + L S Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 282 SYITGQTIHVNGG 294 +IT + V+GG Sbjct: 244 GHITMHNLCVDGG 256
>PF01206#SirA family protein Length = 76 Score = 60.9 bits (148), Expect = 1e-16 Identities = 13/72 (18%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 2 EKVLEVMGQVCPFPLIEAKKAIEEIQPGDDLVIHFDCTQATESIPRWAAEAGHTVTNFEQ 61 ++ L+ G CP P+++AKK + + G+ L + + + ++ + GH + ++ Sbjct: 5 DQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKE 64 Query: 62 LDEAAWTITVRK 73 D + +++ Sbjct: 65 EDG-TYHFRLKR 75
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 31.3 bits (71), Expect = 0.003 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 1 MKIGIIGASGKAGSLILKEAVDRGHEVTAIVRNAA----KIQDKRVDVVEKNIFDIKSGD 56 MK + GA+G G + K ++ GH+V I ++ R++++ + F D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 57 LQKYDVVVNAF 67 L + + + F Sbjct: 61 LADREGMTDLF 71
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 27.3 bits (60), Expect = 0.013 Identities = 9/42 (21%), Positives = 16/42 (38%) Query: 26 IDRGEKLPSVRELSKELKVNPNTIQRVYQELEREELVKTQRG 67 I GE+ R +S N +VY + + ++ G Sbjct: 106 ITIGEQNTIERSVSTTAGPNEYVYYKVYATYRKYQAIRISHG 147
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.008 Identities = 13/31 (41%), Positives = 15/31 (48%) Query: 37 GPNGSGKTTLIKILTGLLRQTGGEVRIGGYK 67 G G GK+TLI L GL + IG K Sbjct: 603 GTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 39.2 bits (91), Expect = 3e-06 Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 17/154 (11%) Query: 3 ALLVLDMQNGILE-MKDFSEERNKIKNIIKRFKD-AKDL---VVLT----------KHID 47 LL+ DMQN ++ + ++ I++ K+ L VV T + + Sbjct: 32 VLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNPDDRALL 91 Query: 48 KDPNSP-LAENTEKSDIDKEFA-QYADLTITKNTPSAFFGTKLDSILKEKNIDHLYITGF 105 D P L + I E A + DL +TK SAF T L +++++ D L ITG Sbjct: 92 TDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGI 151 Query: 106 NTEYCCLFTAITAFERGYKVTFIEDATGTVNDDD 139 CL TA AF K F+ DA + + Sbjct: 152 YAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEK 185
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 120 bits (303), Expect = 3e-35 Identities = 68/255 (26%), Positives = 112/255 (43%), Gaps = 11/255 (4%) Query: 3 KVAIVTGSAGGLGKGIAERLCSDGFSVVVHDINEQLLNETVNEFKNKGYDVIGVKGDVSK 62 K+A +TG+A G+G+ +A L S G + D N + L + V+ K + DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 63 RNDQFNLVKKGVEKFGHLDVFVNNAGIDAVSPFLEITEEQLNKLFSINVNGVVFGTQAAA 122 + + + G +D+ VN AG+ +++E+ FS+N GV +++ + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 123 EQFISQKSKGKIINACSIAGHESYEMLGTYSATKHAVKSFTHSAAKELAKYQITVNAYCP 182 + + ++S G I+ S + Y+++K A FT ELA+Y I N P Sbjct: 129 KYMMDRRS-GSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 183 GVAKTKM----WDRIDEEMVKYSDDLKPGEAFEKFSSEIALGRYQTPEDVANLVSFLASD 238 G +T M W + L E F + I L + P D+A+ V FL S Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSL------ETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 239 DADYITGQAILTDGG 253 A +IT + DGG Sbjct: 242 QAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 81.0 bits (200), Expect = 7e-19 Identities = 60/321 (18%), Positives = 123/321 (38%), Gaps = 20/321 (6%) Query: 30 FLAVFIVGLDSFIISPLLSVIGKGLHTTTQ---GMGWAVTLYAAFYAIGAPIIAPFSEKS 86 V + + +I P+L + + L + G + LYA AP++ S++ Sbjct: 11 LSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRF 70 Query: 87 SRKKMIMAGLAVFTMATISCGFANQLWFFYAARALAGLGAAMFTPNVYAYIGGNFNREQV 146 R+ +++ LA + A LW Y R +AG+ A AYI + ++ Sbjct: 71 GRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADITDGDER 129 Query: 147 AKVMGMVMAALSLSIAVGVPIGSFIAGSTSWNWTFWISGIISLIALFIIMVSVKKDIPSN 206 A+ G + A + G +G G S + F+ + ++ + + + Sbjct: 130 ARHFGFMSACFGFGMVAGPVLGGL-MGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGE 188 Query: 207 RAANHNIFKHYQNIIAKKQAWLGLFMMLFWMYSFYAIYTFLG--------VYIENTFSLS 258 R + W ++ + + + I +G ++ E+ F Sbjct: 189 R----RPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 259 TNRIGLVFIAYGLSN-FASSFFGGWISKPLGMKKTIILSGLVCTVLYLLLALTNHSIVLF 317 IG+ A+G+ + A + G ++ LG ++ ++L + Y+LLA + F Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAF 304 Query: 318 IIVLALVAFFQGVGVPQLTTY 338 I++ L + G+G+P L Sbjct: 305 PIMVLLASG--GIGMPALQAM 323
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 127 bits (319), Expect = 1e-37 Identities = 79/257 (30%), Positives = 113/257 (43%), Gaps = 14/257 (5%) Query: 4 LQGKTALITGGSRGLGAAMAITFAEEGAENLILGDVLLEESKEIARKIKKQFGTNVLPVQ 63 ++GK A ITG ++G+G A+A T A +GA I E E K + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAH--IAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 64 LDVSLEEDWAEVIETIRRTFGKLDILVNNAGINKRAKFADCELEDWNRVIAVNQTGVFLG 123 DV E+ I R G +DILVN AG+ + E+W +VN TGVF Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 124 MKHACQLLKEQPQSAIVNVSSIAGLTGYFAV-AYTASKWAIRGMTKAAAMEFSDWGIRVN 182 + + + ++ +IV V S ++ AY +SK A TK +E +++ IR N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 183 SVHPGFVYTPLTQ-------AASKMVDAFNEITALERP----GEPEEIAKAVAFLASDDA 231 V PG T + A +++ E P +P +IA AV FL S A Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 232 SYITGAELAVDGGMTAG 248 +IT L VDGG T G Sbjct: 244 GHITMHNLCVDGGATLG 260
>cloacin#Cloacin signature. Length = 551 Score = 31.2 bits (70), Expect = 0.007 Identities = 13/68 (19%), Positives = 26/68 (38%) Query: 157 AHWQKKWQKSQKKNQELQKSIKKCELLLSHLKKDWKAEKQSWKKEKEQLQQELGNERTQK 216 A + WQ + K Q Q + + K+ + E +++ +R+ + Sbjct: 384 AGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAE 443 Query: 217 NRLNEWKK 224 N LN+ K Sbjct: 444 NNLNDEKN 451
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 68.7 bits (168), Expect = 8e-15 Identities = 66/358 (18%), Positives = 133/358 (37%), Gaps = 25/358 (6%) Query: 28 VFIAVLPAFLEGFDGNLFGFASPYIVENAHAS---VASLGLLITGSAIGLTLFSLAGGFL 84 + + + L+ L P ++ + S A G+L+ A+ + G L Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 85 FDKFSVKNTILISVSIFSVFTFLSGFSHNLTMLMIARILDGIGVGMFQPAIVAFLGDIFP 144 D+F + +L+S++ +V + + L +L I RI+ GI G A++ DI Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITD 125 Query: 145 EK-RGKATAAFAISYGAGIFIAPYVVSPFLPNIT--IPFAIVGILSALSVLGCYLFIPKT 201 R + + +G G+ P V+ + + PF L+ L+ L +P++ Sbjct: 126 GDERARHFGFMSACFGFGMVAGP-VLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 202 YKRLEKQKVEFKGVLNRNVNLISLSTLFYGVAQFAFIGFISQYLLKV------------L 249 +K + + + + VA + FI Q + +V Sbjct: 185 HKGERR---PLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 250 HLPPGQAAVISSIYGISGLIC-SMPLGMLADRIGRKHVFRLTGLLLFIGGAGIFSVGSHV 308 H + + +GI + +M G +A R+G + L G++ G + + + Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML-GMIADGTGYILLAFATRG 300 Query: 309 LALSILMFVFGAGSYFPGIASAIGQDSVKEHVTGTVTGYIFFIFGIGQIFGGPLFSFL 366 +M + +G A+ V E G + G + + + I G LF+ + Sbjct: 301 WMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 29.7 bits (66), Expect = 0.033 Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 4/91 (4%) Query: 229 SSSNGSSTQSNQSSGAT--SSSSNAGSASSQTSGSSSTQSSSSNNSGS-TTNSTQSSQSS 285 S + STQ+ S T ++S + + +S+ G++ +S + GS + + S+ S+ Sbjct: 301 SKNEDQSTQNTDSQTRTISKNTSTSRTHTSEVHGNAEVHASFFDIGGSVSAGFSNSNSST 360 Query: 286 NA-QSSSQASGSTSSSQSSQSSSAQSSSSNA 315 A S +G + +++ ++A ++ NA Sbjct: 361 VAIDHSLSLAGERTWAETMGLNTADTARLNA 391
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 34.8 bits (80), Expect = 5e-04 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 89 FGPEHGVRGSAD----AGAYVPFYTDSKTGLPVYSLYGETKKPTPEMLKDVDVLVFDIQD 144 +H + S+ +PF TD PV SLY TKK E++ ++ + Sbjct: 116 NKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPV-SLYAATKKAN-ELMAHTYSHLYGLPA 173 Query: 145 VGARFYT 151 G RF+T Sbjct: 174 TGLRFFT 180
>PF07675#Cleaved Adhesin Length = 1358 Score = 32.4 bits (73), Expect = 0.006 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Query: 466 ADFGKV--EVSTDGKNWTKAGNALTGS--SGNWRQMSIPLPAGTKHIRF 510 ++F E K A A+ G+ G W Q ++ LPAGTK++ F Sbjct: 736 SNFADALLEEVLTAKTVVTAPEAIRGTRVQGTWYQKTVQLPAGTKYVAF 784
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 32.9 bits (75), Expect = 0.002 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 10/160 (6%) Query: 46 YSLSQFETGLIVSAVNIGPIFSMLIFGNLMDKYGEKWIVGTGSILLGMNVFIASTTDKYV 105 ++ T + +A + ++G L D+ G K ++ G I+ I + Sbjct: 44 FNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFF 103 Query: 106 WLLIILMFVGIWYGTAQPGGSSAII-KWFPNQHRGLAMG----IRQTGIPIGGALASAIL 160 LLI+ F+ A P ++ ++ P ++RG A G I G +G A+ I Sbjct: 104 SLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIA 163 Query: 161 PYFYFRYGLSAAILAQATVAILGGFIFLIFYKDRQENKNP 200 Y ++ Y +L + I+ + K K Sbjct: 164 HYIHWSY-----LLLIPMITIITVPFLMKLLKKEVRIKGH 198
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.8 bits (64), Expect = 0.021 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 8/93 (8%) Query: 2 VTIRDVAKAAGVSTATVSRILNNKGEASPETIERVRK-----IAEEMNYKPNTLAKSLSK 56 ++ ++AKAAGV+ + +K + E E E P L + Sbjct: 32 TSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLRE 91 Query: 57 GNTNLIALLIPSLENPFFPELVKAIEEAANAYG 89 LI +L ++ L++ I G Sbjct: 92 I---LIHVLESTVTEERRRLLMEIIFHKCEFVG 121
>adhesinb#Adhesin B signature. Length = 310 Score = 30.6 bits (69), Expect = 0.005 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 5/80 (6%) Query: 32 RVVLPAFFGLFLFAGVASAHVTVSPATSTTGAWETYTIKVPTEKNIPTTKVTIK--TPKG 89 R ++ A +S + +S T +I KNI K+ + P G Sbjct: 5 RFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVATNSIIADITKNIAGDKINLHSIVPVG 64 Query: 90 VEIESYEPVPG---WTYSAE 106 + YEP+P T A+ Sbjct: 65 QDPHEYEPLPEDVKKTSQAD 84
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 35.5 bits (81), Expect = 1e-04 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 230 DPDEAEQVLKLPNSYFDRGYKKGKEEGREEGIEIGVEKGREEGIEIGVEKGREEERKEML 289 +P +Q+ +L ++GY+ G EGR++ G ++G +EG+ G+E+G E + Sbjct: 37 EPSLEQQLAQLQMQAHEQGYQAGIAEGRQQ----GHKQGYQEGLAQGLEQGLAEAKS--- 89 Query: 290 QTIPIAIKMLQEGRELQ 306 Q PI +M Q E Q Sbjct: 90 QQAPIHARMQQLVSEFQ 106
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 33.6 bits (76), Expect = 4e-05 Identities = 12/31 (38%), Positives = 23/31 (74%) Query: 22 YDLGYKKGFKEGFKEGFKEGFKEGVKEGREE 52 ++ GY+ G EG ++G K+G++EG+ +G E+ Sbjct: 52 HEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQ 82
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 27.5 bits (60), Expect = 0.002 Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 22 YDLGYEKGFKDGFKEGFKEGFKELFEKG 49 Y G +G + G K+G++EG + E+G Sbjct: 56 YQAGIAEGRQQGHKQGYQEGLAQGLEQG 83
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 30.6 bits (69), Expect = 0.007 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 59 NGVLQEAKKKGMKVITADAQNDSAKQINDIEDLIQQGVDIL---LINPVDSAAVSSAVES 115 GV EA +KV+ I I I+Q VDI+ L P D + AV+ Sbjct: 104 VGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLGGPEDVPELHEAVKK 163 Query: 116 ANHIGIPVI 124 A I V+ Sbjct: 164 AVASQILVM 172
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.5 bits (66), Expect = 0.027 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 6/81 (7%) Query: 56 AGTQSVMGTVIRVLAAGIL----AGTMMKSGAAETIAQAIVNQFGEGKAILSLALATMVI 111 AG +V G + + A+ IL A T K+ A + ++ GK I +A Sbjct: 240 AGLDTVSGILSAISASFILSNADADTRTKAAAGVELTTKVLG--NVGKGISQYIIAQRAA 297 Query: 112 TAVGVFIPVAVLIVAPIALSV 132 + A LI + + L++ Sbjct: 298 QGLSTSAAAAGLIASAVTLAI 318
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 30.8 bits (69), Expect = 0.012 Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 25/121 (20%) Query: 157 FLDERGRMLPFGGGALGDLAEIDLGG---LDPRLKEVQIFVASDVTNPLCGKNGASHVFG 213 LDERG F LGD+ +D+ G +DP K Q+ + ++ +S + G Sbjct: 257 LLDERGNFSKF---TLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL--------SSVLMG 305 Query: 214 PQKGATKEMVALLDANLSHYAAI--------IKEQLGKDVAEVPGAGAAGGLGAGLMVFA 265 G E V+LL A K+Q G +VA + G G +V A Sbjct: 306 SHNGIEPEKVSLLYGGNGGPGARHDWNATVGYKDQQGNNVATIINVHMKNGSG---LVIA 362 Query: 266 G 266 G Sbjct: 363 G 363
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.3 bits (84), Expect = 2e-04 Identities = 10/32 (31%), Positives = 17/32 (53%) Query: 286 LTAFISHNGNPAETARALMIHRNTLYYRLGRI 317 L A + GN + A L ++RNTL ++ + Sbjct: 442 LAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.1 bits (112), Expect = 6e-08 Identities = 62/330 (18%), Positives = 117/330 (35%), Gaps = 30/330 (9%) Query: 60 GFYANRLGARVLFTFSFLFLLIPVFYLSIAQSFWGLVVSGFLIGVAGATFSIGVTSLPKY 119 G ++R G R + S + ++ A W L + + G+ GAT ++ + Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADI 123 Query: 120 YPKERH----GTINGIYGMGNLGTAVTTFAAPVIANMAGWRTTVKLFCIL----LIVFAL 171 + G ++ +G G A PV+ + G + F + F Sbjct: 124 TDGDERARHFGFMSACFGFG-------MVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLT 176 Query: 172 LNFFFGDRHEPKVKVSFAEEFKKVYRDRRLWFLSIFYFITFGSFVAFTVYLPN------- 224 F + H+ + + E + R +++ + V F + L Sbjct: 177 GCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALM---AVFFIMQLVGQVPAALW 233 Query: 225 --FLVSNFSLAKVDAGMRTAGFILLATLLRP-LGGFLSDKFNPYTVLAFTFIGLTLSGIL 281 F F G+ A F +L +L + + G ++ + L I IL Sbjct: 234 VIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYIL 293 Query: 282 LSFSLGITLFTIGCLAVAFCAGIGNGAVFKLVPLYFSNQA-GTVNGIVAAAGGLGGFFPP 340 L+F+ + + +A GIG A+ ++ + G + G +AA L P Sbjct: 294 LAFATRGWMAFPIMVLLA-SGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGP 352 Query: 341 LLLTFVYGLTKSYAIGFMSLSEVALASLVL 370 LL T +Y + + G+ ++ AL L L Sbjct: 353 LLFTAIYAASITTWNGWAWIAGAALYLLCL 382
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 29.9 bits (67), Expect = 0.025 Identities = 19/102 (18%), Positives = 28/102 (27%), Gaps = 35/102 (34%) Query: 67 VYKDGKLKLRAGGPVTKLAQIFYNPNMAKIDDFYEPW-TYDYDHLIHSPKSDHIPVARPR 125 Y GK+ L G A + + W +YD Sbjct: 462 EYTSGKINLSHQG--------------AYVAQYEILWDEINYDD---------------- 491 Query: 126 SMITGKPIDKPR-WSSNWDDDLAGGSETTALDPNMENLQNHI 166 GK + R W +NW + S L N N++ Sbjct: 492 ---KGKEVITKRRWDNNWYSKTSPFSTVIPLGANSRNIRIMA 530
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 54.8 bits (132), Expect = 2e-10 Identities = 70/413 (16%), Positives = 129/413 (31%), Gaps = 37/413 (8%) Query: 23 LFVLFLSTALNYLDRTNISVAAPLMKGDLHLNPVA---LGLVFSAFGWTYAIMQIPGGWL 79 L V+ + AL+ + I P + DL + G++ + + G L Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 80 LDKFGPRRLYGVALGVWSAFTFFQAFAKGFTSLFGLRLGLGLSEAPAFPTNNRLVSTWFP 139 D+FG R + V+L + A A L+ R+ G++ A ++ Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGAT-GAVAGAYIADITD 125 Query: 140 KQERAFATGFYTAGEYVGLAFLTPVLAWIVSDFSWQAIFIVTGVLGFLFIPIWFKFVHEP 199 ERA GF +A G+ PVL ++ FS A F L L + E Sbjct: 126 GDERARHFGFMSACFGFGMV-AGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 200 KDSPYVNEEELDYIAKGDGITENTEEKKKLTWSQISILFKKRTLWGIYIGQFGVTTTLWF 259 KG+ E L + + F + Sbjct: 185 H--------------KGERRPLRREALNPLA--SFRWARGMTVVAALMAVFFIMQLVGQV 228 Query: 260 FLTWFPTYLVNEKHMTIIHAGFYAMVPYIAAFCGVLFGGALSDWFIRRGFSTSFSRKTPV 319 + + + H G + +L+ I + + + Sbjct: 229 PAALWVIFGEDRFHWDATTIGI--------SLAAFGILHSLAQAMITGPVAARLGERRAL 280 Query: 320 IIGLLL-ACTIVLANYTSSIGLVITIMSV-AFFAQGMSGISWTLIGDVAPKELMGLAGGI 377 ++G++ +L + + + IM + A GM + ++ +E G G Sbjct: 281 MLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQ-AMLSRQVDEERQGQLQGS 339 Query: 378 FNFAGNLSGIVTPIVIGMIIGESQHFGGALIFVSAVALIGALSYLFLIGKVER 430 +L+ IV P++ I S + + GA YL + + R Sbjct: 340 LAALTSLTSIVGPLLFTAIYAASITTWNGWAW-----IAGAALYLLCLPALRR 387
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 410 bits (1056), Expect = e-142 Identities = 138/357 (38%), Positives = 194/357 (54%), Gaps = 36/357 (10%) Query: 183 EKQPRAAGVKYMLNDLIGSSRQMALLKEKIKKVARGDITVLITGESGTGKELVAHSIHSS 242 + + L+G S M + + ++ + D+T++ITGESGTGKELVA ++H Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183 Query: 243 SDRSSGPFIKINCGAIPEHLMESELFGYEEGSFTGAKKGGKPGKFQAAEGGTIFLDEIGD 302 R +GPF+ IN AIP L+ESELFG+E+G+FTGA+ G+F+ AEGGT+FLDEIGD Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRST-GRFEQAEGGTLFLDEIGD 242 Query: 303 MPVMMQVKLLRVLQEKEIEPVGAVHPKPIDVRIIAATNQPLKELVEQNRFRKDLYYRINA 362 MP+ Q +LLRVLQ+ E VG P DVRI+AATN+ LK+ + Q FR+DLYYR+N Sbjct: 243 MPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNV 302 Query: 363 IQLDIPPLRTRAEDIPLLARHFLKKASSGLGKRVTGFSPEALSALEGYNWPGNIRELENA 422 + L +PPLR RAEDIP L RHF+++A G V F EAL ++ + WPGN+RELEN Sbjct: 303 VPLRLPPLRDRAEDIPDLVRHFVQQAEK-EGLDVKRFDQEALELMKAHPWPGNVRELENL 361 Query: 423 VHAAVYMASSDAIGLEDLPEAIREHLNRKKESS--------------------------- 455 V + D I E + +R + Sbjct: 362 VRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGD 421 Query: 456 -------LKERMEAAEKQMIEEALRAACFDKKRAAKALGIGHSTLYDKMKKLRIEVK 505 + E +I AL A ++ +AA LG+ +TL K+++L + V Sbjct: 422 ALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVY 478
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 2e-04 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Query: 28 VVVLESMKMEIPIAAEEDGTVVKIHVQEGEFVNESDVLVELE 69 + K I E+ V +I V+EGE V + DVL++L Sbjct: 90 LTHSGRSKE---IKPIENSIVKEIIVKEGESVRKGDVLLKLT 128 Score = 25.9 bits (57), Expect = 0.011 Identities = 11/31 (35%), Positives = 19/31 (61%) Query: 2 EITASMAGSVWKVLVKEGDQVKEGDDVVVLE 32 EI V +++VKEG+ V++GD ++ L Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLT 128
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.8 bits (77), Expect = 1e-04 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 84 AYITNVYTKEEYRGQGIAKELMEKLMDEVKKAGISNIWLGASEMGKP---LYEKFGF 137 A I ++ ++YR +G+ L+ K ++ K+ + L ++ Y K F Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.6 bits (69), Expect = 0.020 Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 23/189 (12%) Query: 87 AIGGTVLGIFGENVIQNLRKSLWQKLTTLKVSYFDTVKAGEISSRLVNDTAQVKQLLAVT 146 A G + G N + K++ KL L+ + +K + +++ Sbjct: 286 AAGLGIKLATGANALDTA-KAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVV--- 341 Query: 147 FPQTLASIITVIGTVYMMFKMDWHMTAAMIVAVPVVVILMIPIM-AFGTKIGHIRQEAMA 205 +TL I ++ V +F + T +AVPVV++ I+ AFG I + M Sbjct: 342 --KTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMV 399 Query: 206 QFNGI----ASETLSEIRLVKTSNAE--KQAQVRANKEINKLFKVGKKEAVFDATMQPIM 259 G+ A + + V + K+A ++ +I A+ M ++ Sbjct: 400 LAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQG--------ALVGIAM--VL 449 Query: 260 MMVFMSMVF 268 VF+ M F Sbjct: 450 SAVFIPMAF 458
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 53.3 bits (128), Expect = 1e-09 Identities = 75/326 (23%), Positives = 127/326 (38%), Gaps = 67/326 (20%) Query: 72 TGSLQLVYSFATFAVAFLVRPIGGMFFGMLGDKFGRKRILAVTLVLMSLATLSMGLIPGY 131 G L +Y+ FA A P+ G L D+FGR+ +L V+L ++ M P Sbjct: 45 YGILLALYALMQFACA----PVLGA----LSDRFGRRPVLLVSLAGAAVDYAIMATAP-- 94 Query: 132 AKIGNLAPFLLLVARLVQGFSTGGEYSGAMTYIAESSPDKKR----GFLSSGLEVGTLSG 187 ++L + R+V G TG + A YIA+ + +R GF+S+ G ++G Sbjct: 95 ------FLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAG 147 Query: 188 YILGSGVVTILSFWLGEDKMLDWGWRLPFFIAAPMGLIG-LYLRNHLEETPVFEAMKEGK 246 +LG M + PFF AA + + L L E+ E + Sbjct: 148 PVLGG-------------LMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRR 194 Query: 247 HKENEKGLFRKVFLFHWPQLLKGIVLVLFFNVVDYMLLSYMPSYLSVVLGYGQSK----- 301 N FR L + +FF + L+ +P+ L V+ +G+ + Sbjct: 195 EALNPLASFRWARGMTVVAAL----MAVFFIM---QLVGQVPAALWVI--FGEDRFHWDA 245 Query: 302 ---GLLFILIVMFIMIPIVLIMGYYSDRIGSKRIIMGGL----VGLIFLSIPAFKLIGSG 354 G+ + + +I G + R+G +R +M G+ G I L+ G Sbjct: 246 TTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLA-----FATRG 300 Query: 355 TNLTVFFGLMILAVLLATFESTMPSM 380 + + VLLA+ MP++ Sbjct: 301 ------WMAFPIMVLLASGGIGMPAL 320
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 31.6 bits (71), Expect = 0.010 Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 9/223 (4%) Query: 266 QVSASSQELAASAEQSSQVSEHIAEVTQEAAEKTDHEMVQIQQVTATVEQMSLELHKIAG 325 Q LA + E++ + +E + QEA E+ E+ + + T +++ K Sbjct: 124 QAEDERLRLAKAEEKARKEAEAAEKAFQEA-EQRRKEIEREKAETERQLKLAEAEEKRLA 182 Query: 326 NSEDMEKAVEIANTLTKEGDKAVSNVQNQMNHIEKTVANASDIIRSLEKRSEEISRIMGI 385 + KAVEIA K+ A S V I+ + S I + + + ++ Sbjct: 183 ALSEEAKAVEIAQ---KKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNE 239 Query: 386 ITSIAEQTNLLALNATIEAARAGEHGQGFAVVANEVRKLA-----EESKKSADEIRTMVS 440 + + + L + RA + Q R++ EE +K T ++ Sbjct: 240 LAQASAKYKELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRIN 299 Query: 441 NIQSEMTHAVKAMEEGHHQVNTGLKESSDAGAAFIKISESMEN 483 I +++T KA+ + + N G+ +A K ++ N Sbjct: 300 RINADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNNLLN 342
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 41.2 bits (96), Expect = 3e-05 Identities = 69/304 (22%), Positives = 115/304 (37%), Gaps = 39/304 (12%) Query: 271 AERAQKWQEAESRLQEAKQEAGTLAVRCESLRGVIENLTEDQKQNEQKRDVLKAEQERLQ 330 AE+A + + A +AK L R + + V E L + + ++ A +Q Sbjct: 67 AEQAARAKAAAEAQAKAKANRDALTQRLKDI--VNEALRHNASRTPSATELAHANNAAMQ 124 Query: 331 HHEVWRLEKEKGEQQARAEKLKSEAADLEKKWELKKSQLLNIRLEQDRLE--TENSKDEA 388 E RL K E++AR EA EK ++ + + I E+ E + ++ E Sbjct: 125 A-EDERLRLAKAEEKAR-----KEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEE 178 Query: 389 SMQETLDELALDAGEAAFPQHEINAGDFSRHEGEAFDFSVWKQEIKQHSGLLQKLQQLAG 448 L E A A Q +++A E D + + S + + ++ Sbjct: 179 KRLAALSEEAKAVEIA---QKKLSAAQ---SEVVKMDGEIKTLNSRLSSSIHARDAEMKT 232 Query: 449 EAERLHEMHMKLQRQSSAKKQEIDELRKQLDHLENWFTEQKQELEDAVFLWIEQHPALPF 508 A + +E+ Q+SAK +E+DEL K+L N + + E Sbjct: 233 LAGKRNELA-----QASAKYKELDELVKKLSPRANDPLQNRPFFEA-------------- 273 Query: 509 TDERLRRIAVALDGLYEENRYEAVREEIVKAANDYILQVQKEISRAEQAQKAKEQELAEA 568 RR A E+ + E + N I Q+QK IS+ + A + EA Sbjct: 274 ----TRRRVGAGKIREEKQKQVTASETRINRINADITQIQKAISQVSNNRNAGIARVHEA 329 Query: 569 EETL 572 EE L Sbjct: 330 EENL 333
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.2 bits (146), Expect = 6e-13 Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 3 ASILVIDDHRLVASGTKSLLQNAGFEAEAIFSADYLKEKIESANYDVFLIDWSFPEVNGL 62 A+ILV DD + + L AG++ +A L I + + D+ + D P+ N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EISKKIIKLQPQAKIIIYTGFDSELAIVLDQLIEEGISGIISKTASVNTLINAVHAVIS 121 ++ +I K +P +++ + ++ + + + E+G + K + LI + ++ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAI--KASEKGAYDYLPKPFDLTELIGIIGRALA 120
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.5 bits (113), Expect = 4e-08 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 13/139 (9%) Query: 104 KITDVKQSILKMQRDLAVQKQNIAYLKKKLSAVHQE--ENKEELNLEIARDQNTYRDTEA 161 + + + ++ +L V K + ++ ++ + +E + EI D Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIG 312 Query: 162 GLQNQQDQLNQLENRVEGRLKAPFDGVV---SISTNNS----GQSQYSI--SSDALEVQS 212 L + + + + ++AP V + T ++ I D LEV + Sbjct: 313 LLTLELAKNEERQQASV--IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 213 SVSEYDYDKLRVGSKVVIK 231 V D + VG +IK Sbjct: 371 LVQNKDIGFINVGQNAIIK 389 Score = 37.1 bits (86), Expect = 9e-05 Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 4/103 (3%) Query: 74 GTVQKVNVRNGDEVKKGDVLL----TTHNNEIIEKITDVKQSILKMQRDLAVQKQNIAYL 129 V+++ V+ G+ V+KGDVLL + ++ + + Q+ L+ R + + Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 130 KKKLSAVHQEENKEELNLEIARDQNTYRDTEAGLQNQQDQLNQ 172 +L + + E+ R + ++ + QNQ+ Q Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKEL 207
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.8 bits (93), Expect = 2e-05 Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 7/148 (4%) Query: 20 RATMVIGMGLFFDFFELFLAGVLSSVLGEEFHVSASLMP---LLLGSSFLGMFIGAIFLC 76 R +VI + D + L + L + S + +LL L F A L Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 77 HIADRYGRKRAFMLNIGIYSLFTIFIAFSPNVGTVIFFRFLAGMGLGAQPALCDTYLSEL 136 ++DR+GR+ ++++ ++ +A +P + + R +AG+ GA A+ Y++++ Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADI 123 Query: 137 IPSVKRGKYIVW---AYTLGFLAVPVEG 161 +R ++ + + G +A PV G Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLG 151 Score = 29.0 bits (65), Expect = 0.045 Identities = 46/176 (26%), Positives = 66/176 (37%), Gaps = 9/176 (5%) Query: 28 GLFFDFFELFLAG----VLSSVLGEE-FHVSASLMPLLL-GSSFLGMFIGAIFLCHIADR 81 L FF + L G L + GE+ FH A+ + + L L A+ +A R Sbjct: 214 ALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAAR 273 Query: 82 YGRKRAFMLNIGIYSLFTIFIAFSPNVGTVIFFRFLAGMGLGAQPALCDTYLSELIPSVK 141 G +RA ML + I +AF+ L G PAL LS + + Sbjct: 274 LGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPAL-QAMLSRQVDEER 332 Query: 142 RGKYIVWAYTLGFLAVPVEGFLSRVLVPLSPMGLDGWRWVFLLGAAGGVFVLIAAR 197 +G+ L L V L + S +GW W + GAA + L A R Sbjct: 333 QGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAW--IAGAALYLLCLPALR 386
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.9 bits (88), Expect = 5e-05 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 6/157 (3%) Query: 18 WFFLGQTVSLFGSAMTPVSLAFAILKVKQGQHLLGYILAA-AVLPNILMLVIGGSIADRY 76 + + L G + + F + +G LAA +L ++ +I G +A R Sbjct: 215 LMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARL 274 Query: 77 RRDKLIRLSNLGSGCSQMGIAIIVLAGGNPYTIFPLAIINGILGAFTSPAMRGIIPELVE 136 + + L + G I+LA + ++ G PA++ ++ V+ Sbjct: 275 GERRALMLGMIADGT-----GYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVD 329 Query: 137 RKHIKQANSLLNLSRSASKIVGPALAGTLVAIFGGGW 173 + Q L S + IVGP L + A W Sbjct: 330 EERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTW 366 Score = 29.8 bits (67), Expect = 0.023 Identities = 48/282 (17%), Positives = 99/282 (35%), Gaps = 20/282 (7%) Query: 51 LGYILAAAVLPNILMLVIGGSIADRYRRDKLIRLSNLGSGCSQMGIAIIVLAGGNPYTIF 110 G +LA L + G+++DR+ R ++ +S G+ +A + ++ Sbjct: 45 YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMAT----APFLWVLY 100 Query: 111 PLAIINGILGAFTSPAMRGIIPELVERKHIKQANSLLNLSRSASKIVGPALAGTLVAIFG 170 I+ GI GA T I ++ + + ++ + GP L G + Sbjct: 101 IGRIVAGITGA-TGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP 159 Query: 171 GG---WGIAIDAVSFFIASIFMSRVHIPSHPVVSKTSFMHEIREGWSYFRKRRWIWLITG 227 A++ ++F + H + + + W+ + Sbjct: 160 HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVF 219 Query: 228 AFA-LINAVQIGVWQVLGPIIAKNTIGSTGWGLTLSIKAVGLL-------IASLVMLKLQ 279 L+ V +W + G ++ + +S+ A G+L I V +L Sbjct: 220 FIMQLVGQVPAALWVIFG----EDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLG 275 Query: 280 LRYPLRDSLIAVAFGGIPLIVLGQGFALPYLLIVTAIAGVGQ 321 R L +IA G I L +G+ ++++ A G+G Sbjct: 276 ERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGM 317
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 26.9 bits (59), Expect = 0.045 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Query: 92 TEDRREVKLQLTLKGEELAKKSSKNAIPYQAMIYAIEKMPEED 134 TE+ EV+L K E+L ++ + + + M I +M + D Sbjct: 503 TEEAVEVRLS---KDEQLQQRRANQRLGAEVMSQRIREMSDND 542
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.004 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 27/106 (25%) Query: 347 VLVILLDNALKYSRFP------VQIEVGSDNDFVTVTVIDHGTGIPKEDLPHLFERFYRV 400 ++ L++N +K+ + ++ DN VT+ V + G+ K Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT----------- 307 Query: 401 DKARTRGTGGTGLGLSIAHSIMTQHGG---GIKIESEEGKGTRVCL 443 TG GL + G IK+ ++GK + L Sbjct: 308 -------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVL 346
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 101 bits (254), Expect = 3e-27 Identities = 34/114 (29%), Positives = 59/114 (51%) Query: 2 IVEDDVKIARVLELELQHEHYDTVWVENGSQALNLLESEDWDLVLLDVMIPCLSGLEVLR 61 + +DD I VL L YD N + + + D DLV+ DV++P + ++L Sbjct: 8 VADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLP 67 Query: 62 RYRMRNSRTPVILLTARNSVLDKVNGLDHGANDYITKPFNIEELLARIRAALRT 115 R + PV++++A+N+ + + + GA DY+ KPF++ EL+ I AL Sbjct: 68 RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 36.7 bits (84), Expect = 7e-05 Identities = 19/74 (25%), Positives = 36/74 (48%) Query: 239 KELFIHIEKEANHMLYSEELKEAPTFAEYLKTVKEEGIEIGIEKGIEKGIEKGKEEGIEI 298 + F+ I + ++ E A+ E+G + GI +G ++G ++G +EG+ Sbjct: 19 QAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQ 78 Query: 299 GIEKGKMEEKRNLA 312 G+E+G E K A Sbjct: 79 GLEQGLAEAKSQQA 92
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 28.9 bits (64), Expect = 0.048 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 5/109 (4%) Query: 264 RAIQISNAFTNEDYRAFDRGPNHPKDLYFVCMTHFSETVKGYVAFKPVGLDNTIGEVLSQ 323 + Q+ + T RA P+ PK +Y +C+ T+ Y + + V + Sbjct: 205 KTPQVPHGITESQTRAV---PSEPKTVYVICLRENGSTI--YPNEVSAQMQDAANSVYAV 259 Query: 324 HGLKQLRIAETEKYPHVTFFMNGGREEPFPGEERILIHSPKVATYDLQP 372 HGLK+ Y +G +E G L +PK YD Q Sbjct: 260 HGLKRYVNFHFVLYTTEYSCPSGDAKEGLEGFTASLKSNPKAEGYDDQI 308
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 43.4 bits (102), Expect = 3e-09 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 4/77 (5%) Query: 1 MHTLLLTLLIIDSILLIAVILLQPGKSTGLSGAISGGAE-QLFGKQKVRGIDLILHRITI 59 M+ LL + +I +I L+ +I+LQ GK + + GA LFG G + R+T Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSS---GSGNFMTRMTA 57 Query: 60 VLAVLFFLLAIGLAYIN 76 +LA LFF++++ L IN Sbjct: 58 LLATLFFIISLVLGNIN 74
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 34.9 bits (80), Expect = 6e-04 Identities = 17/72 (23%), Positives = 27/72 (37%) Query: 213 DDLNLGARFQQAGIPVTNFTGSGLVFFHMYPGGFSHELQGFAKGAVLSTSAIHPFTIAAV 272 D LNLG ++ +T FT SGL G + G ++ S + A Sbjct: 360 DGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGF 419 Query: 273 VFWILGLLISEL 284 +L++ L Sbjct: 420 YQGNWAMLLTAL 431
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 53.3 bits (128), Expect = 6e-10 Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 56/227 (24%) Query: 164 AHALAPSAKIMVV----AAKSASITNLLAAEDYATSHGATVVSNSWGGSEFST--ESSYN 217 +AP A ++++ S ++ YA ++S S GG E + Sbjct: 103 VVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLGGPEDVPELHEAVK 162 Query: 218 SHFNHTGITYLASSGDNGSGSS------WPASSPNVVAVGGTTLNLTSAGQYGSESAWSG 271 I + ++G+ G G +P V++VG + Sbjct: 163 KAVAS-QILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGAINFD--------------- 206 Query: 272 SGGATSTYESRPSYQSGWTSIVGAKRGIPDVSFDADPNTGVYVYSSTKDNGQSGWFQVGG 331 S + + + D+ G + S+ + G Sbjct: 207 --RHASEFSNSNNE--------------VDLV-----APGEDILSTVPGGK---YATFSG 242 Query: 332 TSFSAPAWGALIALANEGRTQS----LSSAQVLSTVYNTAGTTGSSG 374 TS + P +AL + S L+ ++ + + G+S Sbjct: 243 TSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGNSP 289
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 101 bits (254), Expect = 6e-26 Identities = 72/362 (19%), Positives = 141/362 (38%), Gaps = 12/362 (3%) Query: 6 RNLYIMFVCNFLVGASLTMIVPFLSLYIQTFGHFSDNYVQRWAGYIFGVTFLVAFFMSPI 65 R L ++ L + +I+P L ++ H N V G + + L+ F +P+ Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVH--SNDVTAHYGILLALYALMQFACAPV 62 Query: 66 WGRIGDKYGFKPTLIITGFGIAASLFFMGLANNVATLFTTRIFMGIVTGFIPTSMALISK 125 G + D++G +P L+++ G A M A + L+ RI GI + A I+ Sbjct: 63 LGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIAD 122 Query: 126 QTSKEEAGKVLGTLQMGNVSGNLFGPLIGGSIADNFGFKYTFMITAVAISIAALGVVFGI 185 T +E + G + G + GP++GG + F F A + L F + Sbjct: 123 ITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 186 KE-KRSDPARRKEKPVSPLAVIKQIVSRRILITVMVIALLIQMANFCVQPLLALYVSHLT 244 E + + + + ++PLA + ++ +M + ++Q+ L ++ Sbjct: 182 PESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 245 SSGNIAFLSGLAFSATGFGNLLLTRQ---WGMLGDKYGHARILLILLVLACAFMVPQALV 301 + S FG L Q G + + G R L++ ++ + A Sbjct: 242 HWDATT----IGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFA 297 Query: 302 SHLWQLIILRFLFGMVIGGMNPSIVAFIRLEAPLSMQGEVLGYNQSFRFLGNVTGPLIGG 361 + W + L GM P++ A + + QG++ G + L ++ GPL+ Sbjct: 298 TRGWMAFPIMVLLASGGIGM-PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFT 356 Query: 362 YV 363 + Sbjct: 357 AI 358 Score = 52.1 bits (125), Expect = 2e-09 Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 2/191 (1%) Query: 211 SRRILITVMVIALLIQMANFCVQPLLALYVSHLTSSGNIAFLSGLAFSATGFGNLLLTRQ 270 R LI ++ L + + P+L + L S ++ G+ + Sbjct: 3 PNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPV 62 Query: 271 WGMLGDKYGHARILLILLVLACAFMVPQALVSHLWQLIILRFLFGMVIGGMNPSIVAFIR 330 G L D++G +LL+ L A A LW L I R + G+ G A+I Sbjct: 63 LGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIA 121 Query: 331 LEAPLSMQGEVLGYNQSFRFLGNVTGPLIGGYVSVISGISSVFYVTGVLFLFAFALLLYS 390 + G+ + G V GP++GG + S + F+ L F + Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFS-PHAPFFAAAALNGLNFLTGCFL 180 Query: 391 VKSEQRRTVRE 401 + + R Sbjct: 181 LPESHKGERRP 191
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 32.5 bits (73), Expect = 1e-04 Identities = 15/41 (36%), Positives = 27/41 (65%) Query: 16 ELKQGARKEGREEGRKEGREEGLQEGKREGRQEGLREGKIE 56 +L+ A ++G + G EGR++G ++G +EG +GL +G E Sbjct: 46 QLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAE 86 Score = 28.2 bits (62), Expect = 0.003 Identities = 13/31 (41%), Positives = 19/31 (61%) Query: 19 QGARKEGREEGRKEGREEGLQEGKREGRQEG 49 Q EGR++G K+G +EGL +G +G E Sbjct: 57 QAGIAEGRQQGHKQGYQEGLAQGLEQGLAEA 87
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 142 bits (359), Expect = 2e-43 Identities = 84/259 (32%), Positives = 128/259 (49%), Gaps = 9/259 (3%) Query: 5 LKDKVAIVTGGGSGIGEASALKLAAEGAKVCVMDIEQKRADEVKRRIEQNGGEAMALEVD 64 ++ K+A +TG GIGEA A LA++GA + +D ++ ++V ++ A A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 65 VTDPEQVKTAVDKTVREWDRLDIVFSNAGINGTVAPIEDLSPDDWDQTLTTNLKGTFLLT 124 V D + + RE +DI+ + AG+ I LS ++W+ T + N G F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 125 KYAIPHMKN-RGGSIIITSSINGNRIFSNIGMSAYSSSKAGQVAFMKMAALELARYKIRV 183 + +M + R GSI+ S M+AY+SSKA V F K LELA Y IR Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGV--PRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 184 NAVCPGAIETKIEQNTNRTEALEKVQIP---VEFPEGDQPLSEGPGKPEQVADLVLFLAS 240 N V PG+ ET ++ + E + I F G PL + KP +AD VLFL S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG-IPLKK-LAKPSDIADAVLFLVS 240 Query: 241 DDSSHISGTDIYIDGTESL 259 + HI+ ++ +DG +L Sbjct: 241 GQAGHITMHNLCVDGGATL 259
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 34.3 bits (78), Expect = 0.002 Identities = 46/283 (16%), Positives = 96/283 (33%), Gaps = 25/283 (8%) Query: 377 KVSDSVDNVNKAAAGLRTVTKENEAAVTDVSKAVEEIAAGAANQSDHIETGSNAMRDLGG 436 KV + D L+ + + +E+ +N + + ++ + Sbjct: 54 KVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKAS 113 Query: 437 EIEKLAAQSQVIENAVDQAGTEIQSGTKQVDNLEASYQKLEQAFERVTSMMAGL------ 490 +I++L A+ +E A++ A + + ++ LEA L + + G Sbjct: 114 KIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTA 173 Query: 491 ---------NEKSKSIAQVADVITQI--------AEQTNLLSLNASIEAARAGENGKGFA 533 EK+ A+ A++ + A+ + +L A A A + A Sbjct: 174 DSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKA 233 Query: 534 VVANEVRSLAEQSKQSAKDIRATIADVLQDMKELVDVMEETNEISTGQRKAVNSVSTSIA 593 + S A+ +K A A + EL +E ST + ++ A Sbjct: 234 LEGAMNFSTADSAKIKTL--EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKA 291 Query: 594 VLAEGLEKMLSSIKQEAASIRSIGEQKDAVVQMIEDLSAVSQQ 636 L + + A+ +S+ DA + + L A Q+ Sbjct: 292 ALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQK 334
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.5 bits (61), Expect = 0.003 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 20 VKGSVGELSGVKNVDVHLAEGKVDVEFDPNK-----VTLDKVKEAIEDQGYEVA 68 VK ++ L+GV +V + A+ + + D + +T V ++ Q ++A Sbjct: 162 VKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIA 215
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.7 bits (64), Expect = 0.021 Identities = 7/45 (15%), Positives = 18/45 (40%) Query: 90 ASSTVLVTLQPVFAFAGSYFIFREPLSLKAIVCAAFSIFGSILIS 134 + + P+ F GS S+ + A S+ +++++ Sbjct: 445 IAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILT 489
>PF03944#delta endotoxin Length = 633 Score = 32.3 bits (73), Expect = 0.005 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 5/39 (12%) Query: 84 ANYYPAVAEANISRVPLIVLTAD--RP---HELRNVGAP 117 +NY+P NIS VPL+V D RP +E+RN+ +P Sbjct: 415 SNYFPDYFIRNISGVPLVVRNEDLRRPLHYNEIRNIASP 453
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 188 bits (479), Expect = 3e-60 Identities = 83/311 (26%), Positives = 149/311 (47%), Gaps = 20/311 (6%) Query: 1 MKKLFPVL-LAFTMLFVTACANKQESKQ-DHKISVYTTVYPLEYVTQQIGGKYVSVKTIY 58 MKKL +L L + + + ACA+ ++ K+ V T + +T+ I G + + +I Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60 Query: 59 PPGTDEHTYEPSQKDILKLADSDFFFYIGLGLEGFANK-----AKQVLEGQNVKMMALGD 113 P G D H YEP +D+ K +++D FY G+ LE N + + +N A+ D Sbjct: 61 PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSD 120 Query: 114 RLPV----PDKTSAKADPHVWLDPIYVKQMAGMITTQLSKKMPKQKTYFKKNYDQLAKKL 169 + V K DPH WL+ A I QLS K P K +++KN + KL Sbjct: 121 GVDVIYLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKL 180 Query: 170 DRVNAAYKQAVEK--SDNKELVVSHAAYGYWVKRYGIKQIPIAGLSTSDEPSQKQLENII 227 D+++ K K ++ K +V S A+ Y+ K YG+ I ++T +E + +Q++ ++ Sbjct: 181 DKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLV 240 Query: 228 QKVKQDHISYIVFEKNVPSKIAEVVQQETNTK---AVYIHHLGVRTNAEIKAHKDYFTLM 284 +K++Q + + E +V + + V Q+TN ++ + + K Y+++M Sbjct: 241 EKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIA----EQGKEGDSYYSMM 296 Query: 285 DDNLKALEKAL 295 NL + + L Sbjct: 297 KYNLDKIAEGL 307
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 163 bits (413), Expect = 1e-54 Identities = 68/143 (47%), Positives = 98/143 (68%) Query: 5 EQLMEILNKQVANWTVLYTKLHNYHWYVKGPNFLSLHAKFEELYNLANDYLDELAERLLA 64 + LN Q++NW +LY+KLH +HWYVKGP+F +LH KFEELY+ A + +D +AERLLA Sbjct: 11 TLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLA 70 Query: 65 LNGNPVATLKGSLELSSVQEASGNESTEEMVQGTANDFAMIAKELEEAIGLANRIGDDAT 124 + G PVAT+K E +S+ + S EMVQ ND+ I+ E + IGLA D+AT Sbjct: 71 IGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDNAT 130 Query: 125 ADMFINIQETLDKNIWMLNAFLG 147 AD+F+ + E ++K +WML+++LG Sbjct: 131 ADLFVGLIEEVEKQVWMLSSYLG 153
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.018 Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 38 LLGPSGCGKTTLLSILAGL 56 L G G GK+TL++ L GL Sbjct: 601 LEGTGGIGKSTLINTLVGL 619
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 400 bits (1030), Expect = e-138 Identities = 129/339 (38%), Positives = 193/339 (56%), Gaps = 30/339 (8%) Query: 145 LKGKSRVLRNTIQIAAKAAKTDAVTLILGESGTGKEICARAIHEASARKNGPFIPVNCGS 204 L G+S ++ ++ A+ +TD +I GESGTGKE+ ARA+H+ R+NGPF+ +N + Sbjct: 139 LVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAA 198 Query: 205 IPSALFESELFGYEPGTFTGAEKKGKAGKIEEADGGTLFLDEIGELPLDMQVKLLRVLQE 264 IP L ESELFG+E G FTGA+ + G+ E+A+GGTLFLDEIG++P+D Q +LLRVLQ+ Sbjct: 199 IPRDLIESELFGHEKGAFTGAQTRST-GRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQ 257 Query: 265 KVIYRIGDASGRKINVRFIAATNQDIEKMMKEKTFRSDLYYRLNVIQITMPPLRMRPDDI 324 +G + + +VR +AATN+D+++ + + FR DLYYRLNV+ + +PPLR R +DI Sbjct: 258 GEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDI 317 Query: 325 PILARYFLKQFAVQYKMPEPELAPDALSFLQTYDWPGNVRELRNLMERMVILSEKPFIDR 384 P L R+F++Q + + +AL ++ + WPGNVREL NL+ R+ L + I R Sbjct: 318 PDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITR 376 Query: 385 TSLLRFFQGTE----------------------------MRASEHVLPESGTLPVEKENM 416 + + + LP SG M Sbjct: 377 EIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEM 436 Query: 417 EKQLIEKALRKAGGNKSAAAKELGISRVTLYQKLKKFGI 455 E LI AL GN+ AA LG++R TL +K+++ G+ Sbjct: 437 EYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 573 bits (1478), Expect = 0.0 Identities = 228/395 (57%), Positives = 298/395 (75%), Gaps = 2/395 (0%) Query: 3 KIMAINAGSSSLKFQLFEMPNESVITKGLIERIGLNDALFSITVNGDRVKEITDIPNHEI 62 KI+ IN GSSSLK+QL E + +V+ KGL ERIG+ND+L + NG+++K D+ +H+ Sbjct: 2 KILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDHKD 61 Query: 63 AVQFLLKKLT--ETGIIRSLDEIEGVGHRVVHGGEIFNDSAVVNDQVLAQIEDLAELAPL 120 A++ +L L + G+I+ + EI+ VGHRVVHGGE F S ++ D VL I D ELAPL Sbjct: 62 AIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAPL 121 Query: 121 HNRANATGIRAFRAVLPDVVQVAVFDTAFHQTMPESAFLYSLPYAYYEKYRIRKYGFHGT 180 HN AN GI+A ++PDV VAVFDTAFHQTMP+ A+LY +PY YY KY+IRKYGFHGT Sbjct: 122 HNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGT 181 Query: 181 SHKYVAMRAAELLGRPIEQLRLISCHLGNGASIAAIQGGRSIDTSMGFTPLAGVTMGTRS 240 SHKYV+ RAAE+L +PIE L++I+CHLGNG+SIAA++ G+SIDTSMGFTPL G+ MGTRS Sbjct: 182 SHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTRS 241 Query: 241 GNIDPALIPFIMEKTGKTAEEVLEVLNKESGLLGISGVSSDLRDIQVAAELERNKRAELA 300 G+IDP++I ++MEK +AEEV+ +LNK+SG+ GISG+SSD RD++ AA +KRA+LA Sbjct: 242 GSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQLA 301 Query: 301 LDIFASRIHKYIGSYAAKMAGVDAIIFTAGIGENSDAIRARILTGLEFMGIYWDPTLNQI 360 L++FA R+ K IGSYAA M GVD I+FTAGIGEN IR IL GLEF+G D N++ Sbjct: 302 LNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKNKV 361 Query: 361 RGTEAFINYPHSPVKVLVIPTNEELMIARDVVRLS 395 RG EA I+ S V V+V+PTNEE MIA+D ++ Sbjct: 362 RGEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIV 396
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 28.1 bits (62), Expect = 0.017 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 19/131 (14%) Query: 39 ERQAQMIERQEKTIQDLQQEKAIWQEDYKKLNQKNEKLLTIQRID-VKISNYEKYDIHDS 97 ER ++ +E IQ ++E K L+ ++ L + + D +ISNY + + Sbjct: 45 ERPEDFLKDKENAIQWEKKEAERV---EKNLDTLEKEALELYKKDSEQISNYSQTRQYFY 101 Query: 98 QSIFEAEEDIKHDLSPLIAKNLKTAYLNKDLITRMLENKVIKINHRRYTFEVRDILFYSV 157 ++ E + + KNL+ A + +NK+ K + Y F Sbjct: 102 D--YQIESNPREKEY----KNLRNA---------ISKNKIDKPINVYYFESPEKFAFNKE 146 Query: 158 VRVHLNLKLAD 168 +R +++ Sbjct: 147 IRTENQNEISL 157
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 24.3 bits (53), Expect = 0.036 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%) Query: 19 DQLKDTIVDAIQRGEEKMLPGLGVLFEV 46 D + + + +GE+ L G G FEV Sbjct: 27 DAVFSAVSSYLAKGEKVQLIGFGN-FEV 53
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.006 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 38/198 (19%) Query: 61 IPKPHEIREILAEY--VIGQEQAK-KSLAVAVYNHYKRINSNS-------KIDEVELAKS 110 +PKP ++ E++ + + + + L + + ++ + + Sbjct: 102 LPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL 161 Query: 111 NICLIGPTGSGKTLLAQTL---ARILNVPF------AIADATSLTEAGYVGEDVENILLK 161 + + G +G+GK L+A+ L + N PF AI L E+ G + Sbjct: 162 TLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR--DLIESELFGH-EKGAFTG 218 Query: 162 LIQAADYDVEKAEKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPP 221 + E+AE G +++DEI + Q LL++L+ Sbjct: 219 AQTRSTGRFEQAEGGTLFLDEIGDMP--------------MDAQTRLLRVLQQG--EYTT 262 Query: 222 QGGRKHPHQEFIQIDTTN 239 GGR + + TN Sbjct: 263 VGGRTPIRSDVRIVAATN 280
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.8 bits (137), Expect = 1e-10 Identities = 66/361 (18%), Positives = 121/361 (33%), Gaps = 71/361 (19%) Query: 51 REISLSVPLSERVRPAA--FADIVGQEDGIKALR--AALCGPNPQHCIIYGPPGVGKTAA 106 R ++ ++ + +VG+ ++ + A +I G G GK Sbjct: 117 RALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV 176 Query: 107 ARLVLEEAKKNPKSPFQRDAVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQAG 166 AR + + K+ R+ FV ++ A I L G GA G Sbjct: 177 ARALHDYGKR-------RNGPFVAINM--AAIPRDLIESELFGHE-------KGAF--TG 218 Query: 167 IPQPKQGAVTSAHGGVLFIDEIGELHPIQMNKLLKVLEDRKVFLESAYYNPENREIPHHI 226 G A GG LF+DEIG++ +LL+VL+ + I Sbjct: 219 AQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGG-----RTPI---- 269 Query: 227 HDIFQNGLPADFRLIGATTRTPKEIPAAIRSRCMEVFFR------EL----DRGE-IKQV 275 +D R++ AT + K+ R ++++R L DR E I + Sbjct: 270 --------RSDVRIVAATNKDLKQSINQGLFR-EDLYYRLNVVPLRLPPLRDRAEDIPDL 320 Query: 276 AKKAADKIH------MAISENGLDILAQYT--QNGREAVNMVQIAAGLA------IQEGQ 321 + + + L+++ + N RE N+V+ L + + Sbjct: 321 VRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIE 380 Query: 322 DFIREEDLEWVATASQLSPRYE------KKAPEQPAAGLVNGLAVTGPNTGMLLEIEVAA 375 + +R E + + ++ Q A + L +G +L E+E Sbjct: 381 NELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPL 440 Query: 376 I 376 I Sbjct: 441 I 441
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 39.8 bits (93), Expect = 3e-05 Identities = 59/239 (24%), Positives = 83/239 (34%), Gaps = 75/239 (31%) Query: 350 LCLAGPPGVGKTSLARSI---AKSLGRKFVRVSLGGVRD---ESEIRGHRRTYVGAMPGR 403 L + G G GK +AR++ K FV +++ + ESE+ GH + GA G Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEK---GAFTGA 219 Query: 404 IIQGMKK-----AGTINPVFLLDEIDKMASDFRGDPSAAMLEVLDPEQNHAFSDHFIEEP 458 + + GT+ LDEI M D + +L VL Q + Sbjct: 220 QTRSTGRFEQAEGGTL----FLDEIGDMPMDAQ----TRLLRVL---QQGEY------TT 262 Query: 459 YDLSK-----VMFIATAND------------------LSGVP---GPLRDRMEIISISGY 492 V +A N L+ VP PLRDR Sbjct: 263 VGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDR--------- 313 Query: 493 TELEKIEIAKTHLLPKQIKENGLARNQLRMDAEALRLIVRRYTREAGVRGLE---RRLA 548 E I H + + KE + R D EAL L ++ + VR LE RRL Sbjct: 314 --AEDIPDLVRHFVQQAEKEG---LDVKRFDQEALEL-MKAHPWPGNVRELENLVRRLT 366
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 0.004 Identities = 44/248 (17%), Positives = 87/248 (35%), Gaps = 12/248 (4%) Query: 297 PEFSGKNESASLAESELVQNEWHPGPEFPGKNESASLAESGVVQNEWHA-EADLSGKNVS 355 PE +N++ N P P NE + + V A ++ + Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 356 ASIAESEPV-RDEWHAEPGFSGKNESASIAESGVVQNEWHAE-PEFSGKNESASIAESVP 413 S ES+ V ++E A + E A A+S V N E + + + E+ Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 414 VRNEWQADPVRDEGHPEQELSGKTASAFRTESKTALNEESLEPDDAGKTEPVFRIESKAM 473 + + + E QE+ T+ + ++ + EP A + +P I+ Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEP--ARENDPTVNIKEPQS 1160 Query: 474 EDESSAYLKQ-------ESPEKDESSSVASSETIVEESPESGEKIEEVPEEKDSAAKKKK 526 + ++A +Q + S+ ++ V E+PE+ P ++ K K Sbjct: 1161 QTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Query: 527 KQKYESIS 534 + S+ Sbjct: 1221 NRHRRSVR 1228 Score = 31.2 bits (70), Expect = 0.015 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 10/241 (4%) Query: 127 KINADIAIEGILQDGDEEEDEAETAPYPDLNGRETYLDEPDAAYQAPFSHSEWSLSEQEE 186 + N A E Q+ + ++ + E + E + E+EE Sbjct: 1052 EKNEQDATETTAQNREVAKEAKSNVKA-NTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 187 ESTEPPRHFMEEAESFEEVPLRADEEKEEEDESHADPELYTPFTIESRVVPEESVAQPEP 246 ++ E + +V + ++ + + ++ E I+ + Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNT----TA 1166 Query: 247 YTNELNVLAPVELPEEEEESLLPEAGGKVPESASWQAETAAPVRDEWHAEPEFSGKNESA 306 T + + + ES G V E+ + T A + ++E KN Sbjct: 1167 DTEQPAKETSSNVEQPVTESTTVNTGNSVVENP--ENTTPATTQPTVNSESSNKPKNRHR 1224 Query: 307 SLAESELVQNEWHPGPEFPGKNESASLAESGVVQNEWHAEADLSGKNVSASIAESEPVRD 366 S E P + +L + N +D K ++ + V Sbjct: 1225 RSVRSVPHNVE--PATTSSNDRSTVALCDL-TSTNTNAVLSDARAKAQFVALNVGKAVSQ 1281 Query: 367 E 367 Sbjct: 1282 H 1282 Score = 30.0 bits (67), Expect = 0.035 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 12/222 (5%) Query: 372 PGFSGKNESASIAESGVVQNEWHAEPEFSGKNESASIAESVPVRNEWQADPVRDEGHPEQ 431 P +N++ N P NE + + PV A P Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATP--------S 1034 Query: 432 ELSGKTASAFRTESKTALNEESLEPDDAGKTEPVFRIESKAMEDESSA--YLKQESPEKD 489 E + A + ESKT E + + V + ++ + + S K+ Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 490 ESSSVASSETIVEESPESGEKIEEVPEEKDSAAKKKKKQKYESISLADFFARRDEEKPAK 549 ++ VE+ ++ + E+ E ++ KQ+ R+ + Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 550 LKVCIVQSGETLD--QLAEKYNINVQQILRMNHLEVNQDVYE 589 +K Q+ T D Q A++ + NV+Q + + + Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVV 1196
>cloacin#Cloacin signature. Length = 551 Score = 29.7 bits (66), Expect = 0.014 Identities = 18/79 (22%), Positives = 30/79 (37%) Query: 178 GTGTTSGTSKTASSTSSGSDASKTAGESSSGTSKTGSSSTSAASKTAGETKGGGSSSEPG 237 G G +G T+ + + G G +S G+ + ++ +G GGGS G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 238 ATGGTAGADTAATGEAEGV 256 G +G + G V Sbjct: 66 GGNGNSGGGSGTGGNLSAV 84
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 190 bits (485), Expect = 4e-62 Identities = 86/276 (31%), Positives = 127/276 (46%), Gaps = 29/276 (10%) Query: 1 MHGLWTAYFAALGMVFGSFYNVIGLRVPNH------------------------ESIIRP 36 + L+ + ++ GSF NV+ R+P +++ P Sbjct: 11 LPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYNLMVP 70 Query: 37 GSHCPKCGHSLSWYENIPVLSFLALRGRCRSCRAPISPVYPVFEALTGGLFAYSFYRFGW 96 S CP C H ++ ENIP+LS+L LRGRCR C+APIS YP+ E LT L Sbjct: 71 RSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAVAMTLAP 130 Query: 97 SPEFLLAVLFISLLVIITVSDLAYMLIPDKVLFPFAAAIAAVRLFHPASPWWSAWLGAVF 156 L A+L +LV +T DL ML+PD++ P L A +GA+ Sbjct: 131 GWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMA 190 Query: 157 GFCLLYLI-----AFFTKGAMGGGDIKLFFVIGLVLGIEKTFLAFFLACFFGALYGVGLM 211 G+ +L+ + K MG GD KL +G LG + + L+ GA G+GL+ Sbjct: 191 GYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLI 250 Query: 212 AAGKFKKRKPVPFGPFIAIGALAAYFFGNSLIGMYL 247 + KP+PFGP++AI A +G+S+ YL Sbjct: 251 LLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYL 286
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 484 bits (1247), Expect = e-175 Identities = 191/335 (57%), Positives = 250/335 (74%), Gaps = 5/335 (1%) Query: 2 FGSKDLGIDLGTANTLVFIKGKGIVVREPSVVAIQTD----TKQIVAVGDAAKKMIGRTP 57 S DL IDLGTANTL+++KG+GIV+ EPSVVAI+ D K + AVG AK+M+GRTP Sbjct: 8 MFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLGRTP 67 Query: 58 GNIVATRPMKDGVIADYETTAAMMKYYIQQATNKKGFFSKNPYVMVCVPSGITAVEERAV 117 GNI A RPMKDGVIAD+ T M++++I+Q + F +P V+VCVP G T VE RA+ Sbjct: 68 GNIAAIRPMKDGVIADFFVTEKMLQHFIKQV-HSNSFMRPSPRVLVCVPVGATQVERRAI 126 Query: 118 IDATRQAGARDAFTIEEPFAAAIGAGLPVWEPTGSMVVDIGGGTTEVAIISLGGIVTSQS 177 ++ + AGAR+ F IEEP AAAIGAGLPV E TGSMVVDIGGGTTEVA+ISL G+V S S Sbjct: 127 RESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSS 186 Query: 178 IRVAGDEMDEAIISYIRKNYNLLIGDRTAEQIKMEIGSAGEPEGIEPMDIRGRDLLTGLP 237 +R+ GD DEAII+Y+R+NY LIG+ TAE+IK EIGSA + + +++RGR+L G+P Sbjct: 187 VRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVP 246 Query: 238 KTITITADEVADALHDTVYAIVDAVKYTLEQTPPELAADIMDRGIVLTGGGALLRNLDHV 297 + T+ ++E+ +AL + + IV AV LEQ PPELA+DI +RG+VLTGGGALLRNLD + Sbjct: 247 RGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRL 306 Query: 298 ISKETEMPVLIAENPLDCVAIGTGSALENIELFKN 332 + +ET +PV++AE+PL CVA G G ALE I++ Sbjct: 307 LMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGG 341
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 31.9 bits (72), Expect = 7e-04 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 7/57 (12%) Query: 1 MEKKAEHKFILVREDVLPEAMIKTLQAKELLERG-QAVSVGDAAKKAGLSRSAFYKY 56 M +K + + R+ +L A+ + ++G + S+G+ AK AG++R A Y + Sbjct: 1 MARKTKQEAQETRQHILDVAL------RLFSQQGVSSTSLGEIAKAAGVTRGAIYWH 51
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 80.3 bits (198), Expect = 1e-19 Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 12/142 (8%) Query: 79 VQNGANTVKMDIKAPADGTIVKNSAVA-NTYVAAGTTLAQSYDLDD-LYVTAEVKETDLN 136 +N I+AP + + V TL DD L VTA V+ D+ Sbjct: 319 AKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIG 378 Query: 137 DVKTGQDVDVYVDAYPNTK---LTGTVDSIGKAAASTFSLMPTDRSSGNYTKETQVIPVK 193 + GQ+ + V+A+P T+ L G V +I A D+ G I Sbjct: 379 FINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAI-------EDQRLGLVFNVIISIEEN 431 Query: 194 VKLDSYGGLDLVPGMNVTVRIH 215 + L GM VT I Sbjct: 432 CLSTGNKNIPLSSGMAVTAEIK 453
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 158 bits (400), Expect = 2e-44 Identities = 93/408 (22%), Positives = 185/408 (45%), Gaps = 14/408 (3%) Query: 107 KIVFAMMLGAFVAILNQTLLNVAIPHIMNDLNVTANTVQWLSTGYMLVNGILVPVTAFMI 166 +I+ + + +F ++LN+ +LNV++P I ND N + W++T +ML I V + Sbjct: 14 QILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 167 SKWGTRKMLITAVSLFTAGSVLCAIS-TNFSILMLGRIVQASGAGIIMPLMMTVFLTIFP 225 + G +++L+ + + GSV+ + + FS+L++ R +Q +GA L+M V P Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 226 PEKRGSAMGMMGVAMIFAPAIGPTLSGWLVGHYDWHILFWIVIPFGVIDIFVTLAWMKDV 285 E RG A G++G + +GP + G + + W L I + +I + + +K Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKE 192 Query: 286 MKTTNPKIDIPGIIFSTLGFGFLLYGFSEAGNDGWSSKQVVISLIIAVISLVLFVWRELT 345 ++ DI GII ++G F + + S LI++V+S ++FV Sbjct: 193 VRIKGH-FDIKGIILMSVGIVFFMLF---TTSYSIS------FLIVSVLSFLIFVKHIRK 242 Query: 346 TEKPMLDLRVFKYDIFALTTIVSMVVNMAMFAGMILLPIYLQNIRGFTALDSG-LLMLPG 404 P +D + K F + + ++ + + ++P ++++ + + G +++ PG Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 405 AIVMGIMSPISGWLFDKLGARPLAVFGLIITVWTTYEFTKLSMTTSYGHLLFLYVLRSFG 464 + + I I G L D+ G + G+ + + L TTS+ + + V G Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSW-FMTIIIVFVLGG 361 Query: 465 MSFIMMTIMTEGMNQLPIHMTSHGTAAANTARTVAGSLGTAFLVTVMS 512 +SF I T + L G + N ++ G A + ++S Sbjct: 362 LSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.8 bits (82), Expect = 3e-04 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 7/66 (10%) Query: 43 MILYGPPGVGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEIVAAEAKMSGKVILLLDEVH 102 ++L G G+GK+++ + + G + T + K E +++G V L E+ Sbjct: 599 VVLEGTGGIGKSTLINTLVG-LDFFSDTHFDIGTGKDSYE------QIAGIVAYELSEMT 651 Query: 103 RLDKAK 108 +A Sbjct: 652 AFRRAD 657
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 142 bits (359), Expect = 9e-44 Identities = 90/254 (35%), Positives = 132/254 (51%), Gaps = 12/254 (4%) Query: 3 LKNKVAVITGGASGIGEATAWLFANEGAKVVIGDVAESKME-IADKIKETGGEALFVHCD 61 ++ K+A ITG A GIGEA A A++GA + D K+E + +K A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 62 VSDYYSVRHLMEKATDTYGKLDILVACAGIPEKHGPVHELDQDYWQKVLDINLTGVMLSN 121 V D ++ + + G +DILV AG+ + G +H L + W+ +N TGV ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 122 KYAIPYMLKNGKGAIVNMGSFMAHVGITNSAAYSAAKAAVVNLTRAEAVTYAKQGIRVNS 181 + YM+ G+IV +GS A V T+ AAY+++KAA V T+ + A+ IR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 182 VSPGTTESPALK-YFTKEQIQETIDHN---------PMKRLGKPEEVAKAVLFLVSDDAS 231 VSPG+TE+ + E E + P+K+L KP ++A AVLFLVS A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 232 FITGTDLHVDGGYT 245 IT +L VDGG T Sbjct: 245 HITMHNLCVDGGAT 258
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 45.8 bits (108), Expect = 3e-07 Identities = 29/218 (13%), Positives = 67/218 (30%), Gaps = 8/218 (3%) Query: 37 EESAVKESISGKQNEIAKIAENAKQFQSDMEKISAKIRQTNQKISEKTQEVSETKDEVAS 96 E A K + + +E A + + + + ++ Sbjct: 117 ELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 176 Query: 97 LNEKMKETQKRIEERNNVLARRARDIQQKGGADSYLNVLLESSSLSDFVSRAQALTTFVQ 156 + ++ + +E R L + +S+ + + AL Sbjct: 177 KIKTLEAEKAALEARQAELEKALEGAMN--------FSTADSAKIKTLEAEKAALAARKA 228 Query: 157 ADRAILKAQEKDNKTLNTAKAEVEKKLQKVQSDLAELEELKEANKYQLADQKSLEAALKE 216 L+ + + +E + +++ AELE+ E + L+ Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEA 288 Query: 217 QKQAAAAELAKLKDKEASLNAQEKAALAELESKETETA 254 +K A AE A L+ + LNA ++ +L++ Sbjct: 289 EKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK 326 Score = 42.4 bits (99), Expect = 3e-06 Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 12/231 (5%) Query: 24 KANAETAVKSIQNEESAVKESISGKQNEIAKIAENAKQFQSDMEKISAKIRQTNQKISEK 83 KA E ++ + +I + + + + + Sbjct: 185 KAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 244 Query: 84 TQEVSETKDEVASLNEKMKETQKRIEERNNVLARRARDIQQKGGADSYLNVLLESSSLSD 143 + ++ + E A+L + E +K +E N + I+ + L Sbjct: 245 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQS 304 Query: 144 FVSRA--QALTTFVQADRAILKAQEKDNKTLNTAKAEVEKKLQKVQSDLAELEELKEANK 201 V A Q+L + A R K E +++ L E Q ++ DL E K+ + Sbjct: 305 QVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLE 364 Query: 202 YQLADQKSLEAALKEQKQAAAAELAKLKDK-EASLNAQEK--AALAELESK 249 + L+EQ + + A L+ +AS A+++ AL E SK Sbjct: 365 AEHQK-------LEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSK 408 Score = 41.2 bits (96), Expect = 6e-06 Identities = 49/269 (18%), Positives = 91/269 (33%), Gaps = 20/269 (7%) Query: 23 SKANAETAVKSIQNEESAVKESISGKQNEIAKIAENAKQFQSDMEKISAKIRQTNQKISE 82 + A + + ++ + + A++ + + + SAKI+ + + Sbjct: 233 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 292 Query: 83 KTQEVSETKDEVASLNEKMKETQKRIEERNNVLARRARDIQQKGGADSYLNVLLESSSLS 142 E ++ + + LN + ++ ++ + + Q+ + +S Sbjct: 293 LEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD 352 Query: 143 DFVSRA----------------QALTTFVQADRAILKAQEKDNKTLNTAKAEVEKKLQKV 186 SR + Q+ R L A + K + A E KL + Sbjct: 353 LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAAL 412 Query: 187 QSDLAELEE-LKEANKYQLADQKSLEA---ALKEQKQAAAAELAKLKDKEASLNAQEKAA 242 + ELEE K K + Q LEA ALKE+ A ELAKL+ +AS + A Sbjct: 413 EKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAGKASDSQTPDAK 472 Query: 243 LAELESKETETAPSATAAKSSAPQESKQD 271 AP A + K+ Sbjct: 473 PGNKAVPGKGQAPQAGTKPNQNKAPMKET 501
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.002 Identities = 9/30 (30%), Positives = 16/30 (53%) Query: 128 EIEAEVEGEIVDILVKDGQLVEFGQPLFLV 157 EI+ + +I+VK+G+ V G L + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKL 127
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 206 bits (525), Expect = 1e-71 Identities = 109/149 (73%), Positives = 129/149 (86%) Query: 1 MNKGQRLIKIREMITNYDIETQDELVEHLRNAGFNVTQATISRDIKELHLVKVPLNNGRY 60 MNKGQR IKIRE+IT +IETQDELV+ L+ G+NVTQAT+SRDIKELHLVKVP NNG Y Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSY 60 Query: 61 KYSLPADQRFNPMQKLKRALTDAFVSIDTAGHLIVLKTLPGNAHAIGALIDILDWEEIIG 120 KYSLPADQRFNP+ KLKR+L DAFV ID+A HLIVLKT+PGNA AIGAL+D LDWEEI+G Sbjct: 61 KYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIMG 120 Query: 121 SLCGDDTCLIICKNQDETETVSQRFLDLL 149 ++CGDDT LIIC+ D+T+ V ++ L+LL Sbjct: 121 TICGDDTILIICRTHDDTKVVQKKILELL 149
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.3 bits (211), Expect = 5e-21 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 1 MKKIRVFIVDDNRELVRLLEDYISQQEDMEICGTAYSGTECLEQLKEADPDILLLDIIMP 60 M + + DD+ + +L +S+ + + D D+++ D++MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 HLDGLGVLEKLKESAYSRMPNVIMLTAFGQEDVTKKAVELGASYFVLKPFDMDMLVSQIR 120 + +L ++K+ A +P V++++A KA E GA ++ KPFD+ L+ I Sbjct: 59 DENAFDLLPRIKK-ARPDLP-VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 121 Q 121 + Sbjct: 117 R 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 274 bits (701), Expect = 7e-88 Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 317 NVAPVIVNGMLKGSVGVIHDVSEIETLTTELRRA----RRQMMQAATAKYTFEDIIHASD 372 N + KG+ + ++ L + RA +R+ + ++ S Sbjct: 85 NTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSA 144 Query: 373 EMDIAVEQAKLAAQTPVTILLRGESGTGKELFAHAIHQASSRKNHKFVRVNCAAIAESLL 432 M QT +T+++ GESGTGKEL A A+H R+N FV +N AAI L+ Sbjct: 145 AMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLI 204 Query: 433 ESELFGYEEGAFSGAKKGGKKGLFEEADHGSLFLDEIGELSAHMQAKLLRVLQEKEIVKV 492 ESELFG+E+GAF+GA+ G FE+A+ G+LFLDEIG++ Q +LLRVLQ+ E V Sbjct: 205 ESELFGHEKGAFTGAQTR-STGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTV 263 Query: 493 GGTKPVPVDVRIICATHADLEKAVAEGNFREDLYYRLDRMPI 534 GG P+ DVRI+ AT+ DL++++ +G FREDLYYRL+ +P+ Sbjct: 264 GGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPL 305
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.9 bits (166), Expect = 6e-17 Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 23/117 (19%) Query: 2 ENVLGRAIIFMGFHEKSIDADHLDGLGLSP-----------------------GKRAEKQ 38 EN++ R + + + P ++ Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 39 EADGVPEKGNLDEMLSAFEKQLIQKALEENAGNKTNTAKQLGISLRSLYYKLEKYRL 95 D +P G D +L+ E LI AL GN+ A LG++ +L K+ + + Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 90.1 bits (223), Expect = 2e-23 Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 5/195 (2%) Query: 13 MENKRIRKKTIVITGASGGLGEKIAFAAAKNEANLVLLARSLNKLEKIKA--EIEAAYQV 70 M K I K ITGA+ G+GE +A A A++ + + KLEK+ + + EA + Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 71 SCLTVRCDVAEHGKIPAVFESIYNRCGQIDVLVNNAGFGVFDEVQDIRMEDVRGMFDVNV 130 + DV + I + I G ID+LVN AG + + E+ F VN Sbjct: 61 A---FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNS 117 Query: 131 IGLIACTKAVVPHMQKNRAGHIINIASQSAKMATPKSSVYAASKFAVRGFTDSLRMEMAR 190 G+ +++V +M R+G I+ + S A + + YA+SK A FT L +E+A Sbjct: 118 TGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 191 FGVYVTAVHPGPVAT 205 + + V PG T Sbjct: 178 YNIRCNIVSPGSTET 192
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 32.1 bits (73), Expect = 0.005 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 10/76 (13%) Query: 48 WLTHEFNVIDT-GGIDIGDEPFLEQIRQQAEIAIQEADVIIFITSGREGVTSADEMVAKI 106 W + N+IDT G +D FL ++ ++ D I + S ++GV + ++ Sbjct: 65 WENTKVNIIDTPGHMD-----FLAEV----YRSLSVLDGAILLISAKDGVQAQTRILFHA 115 Query: 107 LYRSKKPVVLAVNKVD 122 L + P + +NK+D Sbjct: 116 LRKMGIPTIFFINKID 131
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 27.9 bits (62), Expect = 0.024 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 11/97 (11%) Query: 6 MLLLLVAVCACISLGGCLYPGAQEKESGLPDDMQLQMVQKAVDEYRKDNS-------GLL 58 +++++V + SL G +EK + ++ A+D Y+ DN GL Sbjct: 15 IMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHYPTTNQGLE 74 Query: 59 PIKTKPQNTPVYLKYPIDFNKLKSPKNYLPDPPANAY 95 + P P+ Y + + P DP N Y Sbjct: 75 SLVEAPTLPPLAANYNKEGYIKRLPA----DPWGNDY 107
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 132 bits (335), Expect = 2e-44 Identities = 70/89 (78%), Positives = 76/89 (85%) Query: 2 NKTDLINAVAEATELSKKDTTKAVDAIFDTIQNALANGDKVQLIGFGNFEVRERAARKGR 61 NK DLI VAEATEL+KKD+ AVDA+F + + LA G+KVQLIGFGNFEVRERAARKGR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGEEIDIAASKVPAFKPGKALKDAVK 90 NPQTGEEI I ASKVPAFK GKALKDAVK Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 28.2 bits (63), Expect = 0.046 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 7/44 (15%) Query: 41 SAVRKFRLYMPERYP----YTF---IIKTERIHSYNRGNMARKF 77 + +R F +Y P P + F +++ + I YN G M R F Sbjct: 174 TGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDF 217
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 28.6 bits (64), Expect = 0.021 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 17/105 (16%) Query: 2 SEKKAWHINGFLGILAIV-VFALLGLF-------FLFAVNFFAGIVLLAISVLLVSGICV 53 S+K AW + G G LA V A+ L ++ V+ G +A + + Sbjct: 31 SKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLHGDAT--- 87 Query: 54 IQPNQALVVTFFGRYVGAIRESGFYVTIPLSVRRRVSLRVRNFNS 98 I ++A+ F YV RE V ++ Sbjct: 88 ITYDEAVRKYFLATYVRY-REGWIAAAREEYFD-----AVMVMSA 126
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.6 bits (71), Expect = 0.023 Identities = 70/370 (18%), Positives = 107/370 (28%), Gaps = 50/370 (13%) Query: 245 DNEFGRLKALIDHAVSEKSARLERSVEASLSVLEKEHDDWLEAQYAPQKAAYEEVLAKYS 304 E + D A + + ++EA + LEK + A Sbjct: 163 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL----------EGAMNFSTADSAK 212 Query: 305 GTGKTEAYEAEQEWLEKERALLTRIENWDEDTRQKLQTLLDGAYLMPFETREKAKAYLES 364 A L N+ K++TL + ++ Sbjct: 213 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA----ALEARQAELEKA 268 Query: 365 MQKDFHAGGFFAKKKKTEEARKQRLHDFYAALE---ANTEAQIDWHLRPL-AQEALKPLH 420 ++ + + K KT EA K L A LE A R L A K Sbjct: 269 LEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQL 328 Query: 421 LAGAQMLEQQAGMLKADF--SEAMLAAQVKEGARLTGDYILHYCENVSDEIKRAAREAWN 478 A Q LE+Q + +A L A + +L ++ ++ Sbjct: 329 EAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEH----------------QKLEE 372 Query: 479 DWKALVLKQAALETDEQLKMVRKKAVQAKELAEAYRNLEKIERQLAEKRTELKAPAAHPE 538 K + +L D KK V+ K L EA L +E+ E K Sbjct: 373 QNKISEASRQSLRRDLDASREAKKQVE-KALEEANSKLAALEKLNKELEESKKLTEKEKA 431 Query: 539 QLLAEIEKEWAGEKAHYRVYRGEKDAKQPEETGKALESPGPTEKQAGTLPPETVLAKIEQ 598 +L A++E E K EK AKQ EE K K + + P+ Sbjct: 432 ELQAKLEAEAKALK--------EKLAKQAEELAK-----LRAGKASDSQTPDAKPGNKAV 478 Query: 599 AITLLKHQHG 608 Q G Sbjct: 479 PGKGQAPQAG 488
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 26.0 bits (57), Expect = 0.008 Identities = 8/23 (34%), Positives = 15/23 (65%) Query: 33 RIKALLKNKETISKEELCDALKK 55 +I+ ++ E +++EL D LKK Sbjct: 9 KIREIITANEIETQDELVDILKK 31
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.1 bits (234), Expect = 6e-26 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 2 ANVLIVDDAKFMRMTLAKMLENGGHTVVGEAENGQRAIELYREVRPDVVTMDITMPEMTG 61 A +L+ DD +R L + L G+ V N D+V D+ MP+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 IEAVKKIVREFPDAKIIICSALGQQKLVVEAIESGAKDFIVKPFDETRVLEAVERVL 118 + + +I + PD +++ SA ++A E GA D++ KPFD T ++ + R L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 51.7 bits (124), Expect = 7e-10 Identities = 70/318 (22%), Positives = 112/318 (35%), Gaps = 80/318 (25%) Query: 4 VVIKCGGSILHQL-PDAFFEN-----------LVQIKARFGLEPVIVHGGGPAISAMLEK 51 VVI GG+ L Q +E + +I AR G E VI HG GP + ++L Sbjct: 5 VVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIAR-GYEVVITHGNGPQVGSLLLH 63 Query: 52 MQIKTQFKNGLRVTTEPVLNVVEMVLSGSINKWITRRLSQAGAKAVGISGTDSRLLT--- 108 M + +P+ M G I I + L K G+ ++T Sbjct: 64 MDAGQATYG---IPAQPMDVAGAMS-QGWIGYMIQQALKNELRKR-GMEKKVVTIITQTI 118 Query: 109 -----------------------ARKIETPNLGYVGE---------------IESVNEQV 130 A+++ V E V + Sbjct: 119 VDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAET 178 Query: 131 LLALLRQQFIPVIS-----PVATDKNGQRLNVNA----DLAAAAVARKMNARVWMV-TDV 180 + L+ + I + S PV + + V A DLA +A ++NA ++M+ TDV Sbjct: 179 IKKLVERGVIVIASGGGGVPVILEDGEIK-GVEAVIDKDLAGEKLAEEVNADIFMILTDV 237 Query: 181 PGVMM-----EGKVLPYLTPGQVDGLIQ-KQVITGGMIPKVRAAAECIRSGVKEVVIVDG 234 G + + + L + ++ + G M PKV AA I G + +I Sbjct: 238 NGAALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAII--A 295 Query: 235 TEEDSLLFLAGGGKTGTK 252 E ++ L GKTGT+ Sbjct: 296 HLEKAVEALE--GKTGTQ 311
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 59.8 bits (145), Expect = 3e-12 Identities = 71/323 (21%), Positives = 110/323 (34%), Gaps = 83/323 (25%) Query: 3 KNRVVVKIGSSSLTND--AGEIDEQKFADHIGA--LVALHKAGHEVVVVSSGAVACGFRL 58 RVV+ +G ++L G +E A + + G+EVV+ G L Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61 Query: 59 L---------GYPARPVTLKGKQAAAAIGQSVLIQRYREALGAYGL------IPAQILLT 103 L G PA+P+ + G + IG ++ Q + L G+ I Q ++ Sbjct: 62 LHMDAGQATYGIPAQPMDVAGAMSQGWIGY-MIQQALKNELRKRGMEKKVVTIITQTIVD 120 Query: 104 RKD--F----------------------------------------STKDRYHNAYSTIT 121 + D F S + H TI Sbjct: 121 KNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIK 180 Query: 122 ELLRRGV---------IPVINENDSVSVSELTFGDNDMLSALVSGLVHAGCLIILTDVNG 172 +L+ RGV +PVI E+ + E D D+ ++ V+A +ILTDVNG Sbjct: 181 KLVERGVIVIASGGGGVPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNG 239 Query: 173 LYSTNPKYDRCAQRIDFIDHITPEMMKMAGGAGSKAGTGGMLSKLKAANTAV-SLGVRVF 231 + + E ++ G G M K+ AA + G R Sbjct: 240 AALYYGTEKEQW-----LREVKVEELRKYYEEGHFK-AGSMGPKVLAAIRFIEWGGERAI 293 Query: 232 IGKGKGCDKLVRILEGKGDGTYI 254 I +K V LEGK GT + Sbjct: 294 IAH---LEKAVEALEGKT-GTQV 312
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 376 bits (966), Expect = e-126 Identities = 131/348 (37%), Positives = 193/348 (55%), Gaps = 35/348 (10%) Query: 297 LQKEKFVFRGVTGISRSFQETLRKARIASLSDTTCFITGETGTGKELVARAIHENSSRKN 356 L+ + + G S + QE R +D T ITGE+GTGKELVARA+H+ R+N Sbjct: 129 LEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRN 188 Query: 357 GPFIAVNCGAVPKELMESEFFGYADGAFTGAKRGGHKGKFEQAHGGTLFLDEVAELPSAM 416 GPF+A+N A+P++L+ESE FG+ GAFTGA+ G+FEQA GGTLFLDE+ ++P Sbjct: 189 GPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR-STGRFEQAEGGTLFLDEIGDMPMDA 247 Query: 417 QTALLRVLQERKVVPVGSAKEVSVDVRIIAATHKDLPKLVKEGKFREDLFYRLYVFPVRL 476 QT LLRVLQ+ + VG + DVRI+AAT+KDL + + +G FREDL+YRL V P+RL Sbjct: 248 QTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRL 307 Query: 477 PALRERKEDLPALIQYISRKKNQD----VEIPPAVMKKMQDYHWPGNIRELMNVIENVRL 532 P LR+R ED+P L+++ ++ ++ ++ M+ + WPGN+REL N++ + Sbjct: 308 PPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTA 367 Query: 533 LAVAGEEEAE----------------------------RYVDEYVSGETGLNGMEKQVTT 564 L E + V+E + G + Sbjct: 368 LYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSG 427 Query: 565 LNPR--EAIERDMILEALKHTKGNAAAAAKMLDIPRSTFYRKLRKYGL 610 L R +E +IL AL T+GN AA +L + R+T +K+R+ G+ Sbjct: 428 LYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.4 bits (110), Expect = 1e-07 Identities = 62/321 (19%), Positives = 117/321 (36%), Gaps = 17/321 (5%) Query: 22 CMVLPSILFGSPAGWLADRFNRKMLMSFSDFARCGCVLGIAFSVSLWQVYIFLFFLGFFS 81 L G L+DRF R+ ++ S +A + LW +YI G Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITG 110 Query: 82 AVFTPAESGLLRQVVGENQIQAAIGTSEMINNSAKIIGPVAGGALISLTGIKGAFYLDAI 141 A + + ++ G + GPV GG + F+ A Sbjct: 111 ATG-AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGF-SPHAPFFAAAA 168 Query: 142 SFFLSALLLFGIKAPTLQSPVKSDLEHREKVALTEGFRFLSGFPVLKMGLIVFCTMILAL 201 L+ L + + + + RE + FR+ G V+ + VF M L Sbjct: 169 LNGLNFLTGCFLLPESHKG--ERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVG 226 Query: 202 QISDSQAMILIRDIKNATVHFASWCIAASG-FGMLTASVLFTKI--KLGEK-LITLKISP 257 Q+ + +I D + +AA G L +++ + +LGE+ + L + Sbjct: 227 QVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIA 286 Query: 258 AILGLGCIMVSTGTGWPIGIIEAVYPCVFFLMGFSFTMAAIPFDVLVQKKTPETHTGRVF 317 G ++ GW +P + L M A+ ++ ++ E G++ Sbjct: 287 DGTGY-ILLAFATRGW------MAFPIMVLLASGGIGMPAL--QAMLSRQVDEERQGQLQ 337 Query: 318 GTINSLSTLAVLVGILLGGSL 338 G++ +L++L +VG LL ++ Sbjct: 338 GSLAALTSLTSIVGPLLFTAI 358 Score = 42.1 bits (99), Expect = 2e-06 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 4/125 (3%) Query: 7 FKWHADPIAMAGITLCMVLPSILFGSPAGWLADRFNRKMLMSFSDFAR-CGCVLGIAFSV 65 F W A I ++ + +L S+ G +A R + + A G +L +AF+ Sbjct: 241 FHWDATTIGIS-LAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYIL-LAFAT 298 Query: 66 SLWQVYIFLFFLGFFSAVFTPAESGLLRQVVGENQIQAAIGTSEMINNSAKIIGPVAGGA 125 W + + L + PA +L + V E + G+ + + I+GP+ A Sbjct: 299 RGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357 Query: 126 LISLT 130 + + + Sbjct: 358 IYAAS 362
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 80.1 bits (197), Expect = 1e-20 Identities = 30/213 (14%), Positives = 72/213 (33%), Gaps = 21/213 (9%) Query: 3 PRVSKQHLEERKNHILDAAKRVFERKGYEPVTMQDIVKEAGISRGNLYQYFSNTEEIMQA 62 R +KQ +E + HILD A R+F ++G ++ +I K AG++RG +Y +F + ++ Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 63 VIEKNDDSFYTYIQDLAG-----SHEKIWDAIQAYQKVVCQSLPNPYGIV----MYEYSV 113 + E ++ + + + + + + + ++ V Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLE-STVTEERRRLLMEIIFHKCEFV 120 Query: 114 TRWRNPER--KAFFQKRYTRAMKSFLALLEEGVKQGEFHPVQPLETIVNFMVNIWDGLIL 171 ++ + + Y R L+ ++ M GL+ Sbjct: 121 GEMAVVQQAQRNLCLESYDR----IEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176 Query: 172 --MAQVEEPERVAVGGQLEALNLYLIQALRPDE 202 + + + A+ L++ Sbjct: 177 NWLFAPQSFDLKKEARDYVAI---LLEMYLLCP 206
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.018 Identities = 12/49 (24%), Positives = 17/49 (34%) Query: 88 PEKRGLGLGAELHAYAMSVFKKHQLEEYHLRVSPTNKQAISFYEKMGMK 136 + R G+G L A+ K++ L N A FY K Sbjct: 99 KDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 29.0 bits (65), Expect = 0.003 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 38 IPNKQIVRFLKLRYIFSAAILFLFLIVVLYFKTVNSLVIPLILLIEFTGISVIDHKIKKA 97 +P K F + ++ A + + + V+ LVI L I+F G + I + A Sbjct: 8 VPEKTNFDFFRWQWATFGAAIVMMIASVILP-----LVIGLNFGIDFKGGTTIRTESTTA 62 Query: 98 KN 99 + Sbjct: 63 ID 64
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.013 Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 8/103 (7%) Query: 22 LRKHLDEENDLQLVEAAAKTSDYKMAAVIDGGNIVAVTGYMPMITLYNGRFIWVYDLVTD 81 +++ D++ D+ VE K + ++ G + + + +N + + D+ Sbjct: 47 FKQYEDDDMDVSYVEEEGKAA---FLYYLEN----NCIGRIKIRSNWN-GYALIEDIAVA 98 Query: 82 EVHRSKGYGARLLAYVEKQAGENGYGIVSLSSGLQRKDAHRFY 124 + +R KG G LL + A EN + + L + A FY Sbjct: 99 KDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFY 141
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 56.5 bits (136), Expect = 1e-12 Identities = 24/89 (26%), Positives = 41/89 (46%) Query: 53 GECYVAEIEGKVIGVYILLAARPGIVELANVAVSKEHHGKGFGKRLVLDAIQRAGRKGFK 112 ++ +E IG + + G + ++AV+K++ KG G L+ AI+ A F Sbjct: 65 KAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFC 124 Query: 113 SIEVGTGNSSISQLALYQKCGFRISGVDR 141 + + T + +IS Y K F I VD Sbjct: 125 GLMLETQDINISACHFYAKHHFIIGAVDT 153
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 34.3 bits (78), Expect = 2e-04 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 13/112 (11%) Query: 2 KHALVVG-GTGMLCNVSLWLAGQADHVSIIARNPEKMDACISRAADRSRITPVL-TDYAD 59 K A + G G+ V+ LA Q H++ + NPEK++ +S +R D D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 60 SSALREHLDKLIGQHGPVD--------LAVAWIHSYADQALVTISNVFSQNS 103 S+A+ E ++ + GP+D L IHS +D+ FS NS Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDE---EWEATFSVNS 117
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 30.1 bits (67), Expect = 0.018 Identities = 16/50 (32%), Positives = 25/50 (50%) Query: 76 GEFEVDEKVTAANGILNRVRKQLKIEAKAEIEVPDLHSVQDQFLAQVQVA 125 GE+EV VT NG +N K++K+ +EV + + F Q+A Sbjct: 831 GEYEVKLTVTDNNGGINTESKKIKVVEDKPVEVINESEPNNDFEKANQIA 880
>PF01206#SirA family protein Length = 76 Score = 88.7 bits (220), Expect = 2e-27 Identities = 20/71 (28%), Positives = 39/71 (54%) Query: 7 VDATLDVRGESCPYPELYTLEAIEKLEDGKILEVIADCPQSFINVPASCKRHGHEVLSKV 66 D +LD G +CP P L + + + G++L V+A P S + + K+ GHE+L + Sbjct: 4 FDQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQK 63 Query: 67 KDGTTLYYYIR 77 ++ T ++ ++ Sbjct: 64 EEDGTYHFRLK 74
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 27.4 bits (60), Expect = 0.046 Identities = 13/27 (48%), Positives = 15/27 (55%) Query: 1 MKNWLKKSMVILVSVLTFGLVPPSHAI 27 MKN+L M L+ LTFG V AI Sbjct: 1 MKNYLSFGMFALLFALTFGTVNSVQAI 27
>PERTACTIN#Pertactin signature. Length = 922 Score = 31.6 bits (71), Expect = 0.012 Identities = 19/51 (37%), Positives = 25/51 (49%) Query: 120 RLFRLQKEMDAGGAWEAGANAQTVLSKLGIRDLDRKISGLSGGQKKRVALA 170 RL L+ DAGGAW G + L R D+K++G G VA+A Sbjct: 648 RLGELRLNPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVA 698
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.8 bits (80), Expect = 4e-04 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 16/83 (19%) Query: 93 LHMMFKGNPGTGKTTVARLI-------GKLFHKMN--VLSKGHLIEAERADLVGEYIG-- 141 L +M G GTGK VAR + F +N + + LIE+E L G G Sbjct: 161 LTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR-DLIESE---LFGHEKGAF 216 Query: 142 HTAQKTRD-LIKKAIGGILFIDE 163 AQ ++A GG LF+DE Sbjct: 217 TGAQTRSTGRFEQAEGGTLFLDE 239
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 102 bits (257), Expect = 4e-29 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KILIVDDAAFMRMMIKDILTKNGYDVVAEAGDGAQAIEKYKEHRPDLVTMDITMPEVDGI 63 IL+ DD A +R ++ L++ GYDV + A DLV D+ MP+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 64 SALKEIKKIDPDAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAIQKTLG 120 L IKK PD V++ SA I A + GA D++ KPF +I I + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 121 bits (304), Expect = 9e-36 Identities = 51/114 (44%), Positives = 78/114 (68%) Query: 254 AQNAAKQEMYQNVQPAVFTSFEETAPRVETKNLDMLLDIPLEVTVELGRTSKTVREILEM 313 A N K ++ AVF +++D+++DIP+++TVELGRT T++E+L + Sbjct: 22 ALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRL 81 Query: 314 GAGSIVELDKLAGEPVDILINHQLIAIGEVVVIDENFGVRVTDIVSQKDRLKKL 367 GS+V LD LAGEP+DILIN LIA GEVVV+ + +GVR+TDI++ +R+++L Sbjct: 82 TQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 345 bits (886), Expect = e-120 Identities = 129/331 (38%), Positives = 219/331 (66%), Gaps = 2/331 (0%) Query: 4 DILSQSEIDALLSALSTGEMNAEEIKKEE-TRKVKVYDFKRALRFSKDQIRSLTRIHENF 62 ++LSQ EID LL+A+S+G+ + E+ + TRK+ +YDF+R +FSK+Q+R+L+ +HE F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 63 SRILTTFLSAQLRTYVQISVASADQIPYEEFIRSIPKMTLLTVYEVPPLDGNIIMEINPN 122 +R+ TT LSAQLR+ V + VAS DQ+ YEEFIRSIP + L V + PL GN ++E++P+ Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 123 IAYTMMDRVLGGYGESINKIDKLTEIEKKIMTRIFDQTIDQLKEAWSEIIEINPFLTELE 182 I ++++DR+ GG G++ LT+IE +M + + + ++E+W+++I++ P L ++E Sbjct: 123 ITFSIIDRLFGGTGQAAKVQRDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQIE 182 Query: 183 VNPQFLQMISPNETVVVISLNTTIGDTNGMINLCLPQVVLDPMMPKLSGHYWMQHAGKEP 242 NPQF Q++ P+E VV+++L T +G+ GM+N C+P + ++P++ KLS +W + Sbjct: 183 TNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSS 242 Query: 243 DPDNIRLLEEGIKEAKVPLTAELGTATVKIEDFLNLEIGDCIRLNQT-IEEPLVVKVDKI 301 + +L + + + + AE+G+ + + D L L +GD IRL+ T + +P V+ + Sbjct: 243 TTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNR 302 Query: 302 PKFIGQPGKQGTKMAVQILDIIEEGEEEQYE 332 KF+ QPG G K+A QIL+ IE +E +E Sbjct: 303 KKFLCQPGVVGKKIAAQILERIESTSQEDFE 333
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 46.5 bits (110), Expect = 5e-08 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 9/116 (7%) Query: 143 KSFSVATDGTISDQNGNTIGTISIATFQNPAGLTKAGGNLYTTANSNAGQ-----VTVSQ 197 S A D N N + + + G K+ + Y + S+ G T S Sbjct: 435 ASEEDAGDS----DNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSA 490 Query: 198 PGQNGAGTIKSGYLEMSNVDLSEELTNMIVAERGFQANTRIITTSDEILQELVNLK 253 N + + +S V+L EE N+ ++ + AN +++ T++ I L+N++ Sbjct: 491 TQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 42.6 bits (100), Expect = 9e-07 Identities = 15/52 (28%), Positives = 23/52 (44%) Query: 4 SLYSGVSGMKNFQTELDTIGNNIANVNTYGYKKGRVTFKDAISQTLASATPG 55 + + +SG+ Q L+T NNI++ N GY + A S A G Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVG 54
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 30.4 bits (68), Expect = 0.002 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Query: 42 HAGERLQERGIELDDSTWKQISTKVAEAKKKGLDETLVLADDAALIVSAKNATVI--TAM 99 + GE++ E +E ++ +W + + + K + D LV DDA I S N + Sbjct: 155 YRGEKISE--LEQENVSWTDVIKAIVKHKDRFNDNRLVFIDDARTIFSLANIVNTNNNSA 212 Query: 100 DRSEAGSQI--FSNI 112 D + I F+N+ Sbjct: 213 DVNPKEDGIGYFTNV 227
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.005 Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 4/117 (3%) Query: 84 YKSQIRSLQKQASEKDKEISKLQSELDKSQQNNLKMKQTVSDLKQQLKKAQQ---QQAAN 140 K Q + Q Q +K+ + K ++E + + K +L +QA Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 141 QKKLKEIASTYENMNPENAAAIIQKMSDQEATGILSQLSSETLANVLEKMSADKAAK 197 + + E + Y E ++ E+ + ++ + + + + DK + Sbjct: 251 KHAVLEQENKYVEAVNELRVY-KSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQ 306
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 33.6 bits (76), Expect = 1e-04 Identities = 25/140 (17%), Positives = 63/140 (45%) Query: 1 MNYHYKFEKILDVKEKEKDEALSAYKNAVQAFENVARELYALLKKKEDLEAHQAEKMKAG 60 M H + D+ EKE ++A + + +L L+ + + + M AG Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60 Query: 61 LSVQEIRHYRRFIDDIEKSIHYYQSLVMNARNRMNWHQQKLQEKNIEVKKYEKLKDKDYG 120 ++ +Y++FI +EK+I ++ + +++ +EK ++ ++ L+++ Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120 Query: 121 RFLMKLKIQEEKQADEISTQ 140 L+ ++K+ DE + + Sbjct: 121 AALLAENRLDQKKMDEFAQR 140
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 35.5 bits (81), Expect = 1e-04 Identities = 42/194 (21%), Positives = 92/194 (47%), Gaps = 31/194 (15%) Query: 52 IAEEKKQWEQEKAKLTEQAQRQGFEAGYADGRKEGF-ESIRDHLNESID---IVNRSKEA 107 I E + EQ+ A+L QA QG++AG A+GR++G + ++ L + ++ +S++A Sbjct: 33 IEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQA 92 Query: 108 ------------FKKHLEASEKDI----LEIAMKAAGKILQDTLETSPEKMFAIVKNVLK 151 F+ L+A + I +++A++AA +++ T + ++ +L+ Sbjct: 93 PIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQ 152 Query: 152 EATGYK-EVDLHIHPGQYAFVMDNKEELDALFPNDTKCY---VYPDDSLEPYQVYIESGS 207 + + + L +HP D+ + +D + + + D +L P + + Sbjct: 153 QEPLFSGKPQLRVHP-------DDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADE 205 Query: 208 GRIDASIDSQLSEL 221 G +DAS+ ++ EL Sbjct: 206 GDLDASVATRWQEL 219
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 383 bits (984), Expect = e-135 Identities = 192/332 (57%), Positives = 267/332 (80%) Query: 6 KTLSGKEKAAILLISLGPDVSASVYKHLTEEEIEKLTLEISGVRKVDNETKEKVLTEFHH 65 L+GK+KAAILL+S+G ++S+ V+K+L++EEIE LT EI+ + + +E K+ VL EF Sbjct: 13 SALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKE 72 Query: 66 IALAQDYITQGGIGYAKMILEKALGPEQAASIINRLTSSLQVRPFDFARKADAAQILNFI 125 + +AQ++I +GGI YA+ +LEK+LG ++A IIN L S+LQ RPF+F R+AD A ILNFI Sbjct: 73 LMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFI 132 Query: 126 QDEHPQTIALILSYLDPEKAGQILSELPPEMQGDIARRIALMEGTSPEIISEVEAILERK 185 Q EHPQTIALILSYLDP+KA ILS LP E+Q ++ARRIALM+ TSPE++ EVE +LE+K Sbjct: 133 QQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKK 192 Query: 186 LSATVTQDYTQTGGVESVVEVLNGVDRTTEKTILDSLEQKDPELAEEIKKRMFVFEDIVT 245 L++ ++DYT GGV++VVE++N DR TEK I++SLE++DPELAEEIKK+MFVFEDIV Sbjct: 193 LASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVL 252 Query: 246 LDNRSIQRVIRECENEDLLLALKVSSDEVKEIIFRNMSQRMADSMKEEMEYMGPVRLREV 305 LD+RSIQRV+RE + ++L ALK V+E IF+NMS+R A +KE+ME++GP R ++V Sbjct: 253 LDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDV 312 Query: 306 EEAQSRIVSIIRRLEDSGEIIIARNGGDDIIV 337 EE+Q +IVS+IR+LE+ GEI+I+R G +D++V Sbjct: 313 EESQQKIVSLIRKLEEQGEIVISRGGEEDVLV 344
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 306 bits (786), Expect = e-100 Identities = 135/560 (24%), Positives = 244/560 (43%), Gaps = 63/560 (11%) Query: 16 WKSRSKKQKTIG-ISAVALMLVLAAGITYFMTKTKYAPLYSGLDVSETGSIKDELDQEGV 74 W +R + I I A + + + + + Y L+S L + G+I +L Q + Sbjct: 15 WLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNI 74 Query: 75 PSKITDGGKTIEVPEDQVDDLKVTLAAKGLPKTGSIDYSFFSQNAKFGMTDNEFNVVKLD 134 P + +G IEVP D+V +L++ LA +GLPK G++ + Q FG++ V Sbjct: 75 PYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEK-FGISQFSEQVNYQR 133 Query: 135 AMQTELENLIEQMDGVEKAKVMINLPNQSVFVADSQAKASASVVLTLKPGYELDQNQIKA 194 A++ EL IE + V+ A+V + +P S+FV + + SASV +TL+PG LD+ QI A Sbjct: 134 ALEGELARTIETLGPVKSARVHLAMPKPSLFVREQK-SPSASVTVTLEPGRALDEGQISA 192 Query: 195 VYNLVSKSVPNLPTDNIVIMNQNFEYYDLNSSNSSGNAYTQQQAIKKQIERDIQQQVQTM 254 V +LVS +V LP N+ +++Q+ S+ S + Q +E IQ++++ + Sbjct: 193 VVHLVSSAVAGLPPGNVTLVDQSGHLLT-QSNTSGRDLNDAQLKFANDVESRIQRRIEAI 251 Query: 255 LSTLMGAGKAVVTVTADIDFTQEKREEDLVEP---VDKTNMKGIEIS-AKKIQETYQG-- 308 LS ++G G VTA +DF +++ E+ P K ++ +++ ++++ Y G Sbjct: 252 LSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGV 311 Query: 309 TGAAAGTPSG---------------STDSVGSSYVSGSNGNGTYSKTSD-TINYEVNRIK 352 GA + P+ + ++ +S + SN G S + T NYEV+R Sbjct: 312 PGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTI 371 Query: 353 RKITESPYKIRDLGIEVMVEPP--VRTKRSSLPASRLKDIKSMLSTIVRTSIDKSSGTRL 410 R + I L + V+V K L A ++K I+ + + G Sbjct: 372 RHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAM--GFSDKRG--- 426 Query: 411 TNQTVADKIAVSVQPFAANAPEKAKKASIPWW--------VYAIGGGLLLVIAGLIFF-- 460 D + V PF+A +P+W + A G LL+++ I + Sbjct: 427 ------DTLNVVNSPFSAVDNT---GGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRK 477 Query: 461 --------MIRNRRRAASEA---EEEMAEETPEKPAPPRIPDVNEEQETDASARRKQLEK 509 + + A +A +E ++ Q A +++ + Sbjct: 478 AVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIRE 537 Query: 510 MAKEKPDEFAKLLRSWLSEE 529 M+ P A ++R W+S + Sbjct: 538 MSDNDPRVVALVIRQWMSND 557
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 62.4 bits (151), Expect = 3e-16 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 23 GAASSANGSVSFSDLLKQSVNELNKQQNHSDTLITKLSNGE-NVDLYQVMVAVQKANLSM 81 S ++SF+ L +++ ++ Q + T K + GE V L VM +QKA++SM Sbjct: 22 AQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSM 81 Query: 82 QTALEVRNKAVEGYKEMMQMQV 103 Q ++VRNK V Y+E+M MQV Sbjct: 82 QMGIQVRNKLVAAYQEVMSMQV 103
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.003 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 7/117 (5%) Query: 59 KQYASEIEAAKKERKERKQLVRDSGRAPAEEGQQTEATLFDAIRILQQLAEKSRHESGQL 118 Q + E R APA + TE ++ + + + + + + Sbjct: 1003 IQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETT 1062 Query: 119 SASRRGTEEWKSKYEALLQKY------LEEKEKHEQLQKEYSALLSIMEKARQLSEQ 169 + +R +E KS +A Q E KE KE +A + EKA+ +E+ Sbjct: 1063 AQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE-TATVEKEEKAKVETEK 1118
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.0 bits (78), Expect = 0.002 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 105 ARAGQIDPVIGRDEEIARVIEILNR-RNKNNPVLI-GEPGVGKTAIAEGL 152 + P++GR + + +L R + ++I GE G GK +A L Sbjct: 131 DDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Score = 29.8 bits (67), Expect = 0.045 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 12/152 (7%) Query: 431 VIGQDEAVRKVAKAIRRSRAGLKAKSRPIGSFLFVGPTGVGKTELTKRLAEELFGTKD-A 489 ++G+ A++++ + + R + + G +G GK EL R + ++ Sbjct: 139 LVGRSAAMQEIYRVLARL-MQTDL------TLMITGESGTGK-ELVARALHDYGKRRNGP 190 Query: 490 MIRLDMSEYMEKHSVSKLIGAPAG-YVGYEDAGQLTEKVRRNPYSIILLDEIEKAHPDVL 548 + ++M+ S+L G G + G + + + + LDEI D Sbjct: 191 FVAINMAAIPRDLIESELFGHEKGAFTGAQTRST--GRFEQAEGGTLFLDEIGDMPMDAQ 248 Query: 549 NMFLQILDDGRLTDAQGRTVSFKDTVIIMTSN 580 L++L G T GRT D I+ +N Sbjct: 249 TRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN 280
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.012 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Query: 381 QVFI-NIIKNAIEVMPDGGKIDIKICYEKERGLVHTSIRDEGQ 422 Q + N IK+ I +P GGKI +K K+ G V + + G Sbjct: 261 QTLVENGIKHGIAQLPQGGKILLKG--TKDNGTVTLEVENTGS 301
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 163 bits (415), Expect = 6e-55 Identities = 80/141 (56%), Positives = 105/141 (74%) Query: 3 IETALNVQVANWSVLYTKLHHYHWYVKGPLFFTLHVKFEELYNEAATVVDDFAERILAIG 62 +E +LN Q++NW +LY+KLH +HWYVKGP FFTLH KFEELY+ AA VD AER+LAIG Sbjct: 13 VENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIG 72 Query: 63 GKPAASFKEYLEIATIEEAKSGLTAEQMVESLVKDYKQIAGELKKLIALAEDNHDYGTAD 122 G+P A+ KEY E A+I + + +A +MV++LV DYKQI+ E K +I LAE+N D TAD Sbjct: 73 GQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDNATAD 132 Query: 123 MATTLVESVEKTIWMLSALLA 143 + L+E VEK +WMLS+ L Sbjct: 133 LFVGLIEEVEKQVWMLSSYLG 153
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 120 bits (303), Expect = 9e-35 Identities = 83/262 (31%), Positives = 131/262 (50%), Gaps = 18/262 (6%) Query: 34 LNYKGSEKLKGRVALITGGDSGIGRAVAIAYAKEGANV-AINYLNEQNDAEETKSLVEAE 92 +N KG E G++A ITG GIG AVA A +GA++ A++Y E+ E+ S ++AE Sbjct: 1 MNAKGIE---GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEK--LEKVVSSLKAE 55 Query: 93 GVQCLLLPGDVSQEATCKQLVEKTVAEFGKLDILVNNAGVQFPTEKIEDITHEQWDKTFR 152 P DV A ++ + E G +DILVN AGV P I ++ E+W+ TF Sbjct: 56 ARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFS 114 Query: 153 TNIYSVFYMCKYAVPHLK--QGSAIISTASINPYVGNPKLLDYTATKGAIVGFTRSLAQN 210 N VF + ++ + +I++ S V + Y ++K A V FT+ L Sbjct: 115 VNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLE 174 Query: 211 LASKGIRVNMVAPGPIWTPLIPSTFDEK---------TVESFGLKTPLGRPGQPADHAGA 261 LA IR N+V+PG T + S + ++ ++E+F PL + +P+D A A Sbjct: 175 LAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADA 234 Query: 262 YVLLASDEGAYITGQCIHVNGG 283 + L S + +IT + V+GG Sbjct: 235 VLFLVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 50.6 bits (121), Expect = 7e-09 Identities = 48/301 (15%), Positives = 111/301 (36%), Gaps = 36/301 (11%) Query: 67 AIAFLMRPLGGVIFGRIGDKYGRKVVLTITIILMAFSTLLIGLLPTYDQIGIWAPVLLLV 126 A+ LM+ + G + D++GR+ VL +++ A ++ P +W +L + Sbjct: 50 ALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPF-----LW---VLYI 101 Query: 127 ARIIQGFSTGGEYAGAMVYIAESSPDNKR----NVLGSGLEIGTLAGYILASLLASTLFI 182 RI+ G TG A A YIA+ + ++R + + G +AG +L L+ Sbjct: 102 GRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGF--- 157 Query: 183 TLTDQQMATWGWRIPFLLGLPLGLVGFYLRAHLEETPIFENELSVEGVQEESFLSILKNH 242 PF L + F L + S Sbjct: 158 ----------SPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWAR 207 Query: 243 KKDILVCFVSVAF-FNVTNYMLLSYMPSYLDEVIGLSSTAGTVLITLIMVI-MVPLALLF 300 ++ ++V F + + + + ++ +T + + ++ + A++ Sbjct: 208 GMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMIT 267 Query: 301 GKLSDQIGNKTVLIMGLGGLTLLSVLAFYFIHLNTIAFVFLGILIL----GILLSTYEGT 356 G ++ ++G + L++G+ + + + T ++ I++L GI + + Sbjct: 268 GPVAARLGERRALMLGM----IADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAM 323 Query: 357 M 357 + Sbjct: 324 L 324 Score = 33.3 bits (76), Expect = 0.002 Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 5/107 (4%) Query: 244 KDILVCFVSVAFFNVTNYMLLSYMPSYLDEVIGLSSTAGT--VLITLIMVIMVPLALLFG 301 + ++V +VA V +++ +P L +++ + +L+ L ++ A + G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 302 KLSDQIGNKTVLIMGLGGLTLLSVLAFYFIHLNTIAFVFLGILILGI 348 LSD+ G + VL++ L G +V + +++G ++ GI Sbjct: 65 ALSDRFGRRPVLLVSLAG---AAVDYAIMATAPFLWVLYIGRIVAGI 108
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 24.9 bits (54), Expect = 0.017 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 4/27 (14%) Query: 28 FTGSWFP----TYLLYTSNSESGLYAV 50 F +W P T YT+N +G+ A+ Sbjct: 260 FATAWIPHNDGTNNFYTANLGNGIAAI 286
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 24.0 bits (52), Expect = 0.021 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 5/33 (15%) Query: 1 MDDLETWFYLHVMNTLYFVFFMFAVPPAIAALI 33 MDDL + N ++ + + P I A I Sbjct: 1 MDDL-----VFAGNKALYLVLILSGWPTIVATI 28
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 31.0 bits (70), Expect = 0.001 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 4/56 (7%) Query: 9 EEQLETAFQIRKKVFVE--EQHVPVEE--EIDALEQDCTHFLLYDDEGKPSGAGRF 60 E + F +RK+ F + V + E D + + T +L + + RF Sbjct: 14 ETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGIKDNTVICSLRF 69
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.007 Identities = 27/159 (16%), Positives = 40/159 (25%), Gaps = 19/159 (11%) Query: 36 SEKTEHAGHGTIAEPMPASGDTGHAEEKNNAAAREKKTEPEQPKPNKA-VEQEKTEEAAE 94 E + A A +E K E K K KA VE EKT+E + Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKE-TQTTETKETATVEKEEKAKVETEKTQEVPK 1124 Query: 95 RGGAVNVSFKTKTADPAEHEESANAMGQQHVAEPAGAVEAETDLETDGADKADTWPEQET 154 T P + + + E V + P +ET Sbjct: 1125 ---------VTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKET 1175 Query: 155 VQPPSRKRFKEMTVHEKIDYLIHKPGFLPEIPVMIQTNS 193 + + TV+ E P + Sbjct: 1176 SSNVEQPVTESTTVNTGNSV--------VENPENTTPAT 1206
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 53.9 bits (129), Expect = 8e-11 Identities = 58/259 (22%), Positives = 105/259 (40%), Gaps = 17/259 (6%) Query: 5 LENKTFVVMGVANKRSIAWGIAQSLDAAGARII-FTYALDRNEKSIHELAETLNRKDYLI 63 +E K + G A + I +A++L + GA I Y ++ EK + L + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 64 LQCDVESDEQIQSCFQTIKKEAGTIDGIAHCVAFARREELKGDYTNVTREGFLLAHNISS 123 DV I I++E G ID + + R G +++ E + +++S Sbjct: 64 A--DVRDSAAIDEITARIEREMGPIDILVNVAGVLR----PGLIHSLSDEEWEATFSVNS 117 Query: 124 YSLSAVAKAVKELELMPNGGSIVTLTYLGGERVMENYNVMGVAKASLDASVRYLAYDLGK 183 + +++V + + GSIVT+ + +KA+ + L +L + Sbjct: 118 TGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 184 LNIRVNSISAGPIRTLSAKGV-SDFNSILKVMEERA-------PLHRGVDTREVGDTALF 235 NIR N +S G T + +D N +V++ PL + ++ D LF Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 236 LFSDLSRAVTGENIHVDAG 254 L S + +T N+ VD G Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 35.1 bits (81), Expect = 2e-04 Identities = 15/32 (46%), Positives = 19/32 (59%) Query: 5 LVIGAGAFFGFELCKALLDAGYPVIAADQETD 36 LV GA F GF + K LL+AG+ V+ D D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLND 35
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 42.1 bits (99), Expect = 8e-08 Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 6/91 (6%) Query: 3 KVITYGTFDLLHWGHINLLKRARALGDYLIVGLSSDEFNEIKNKKSYHSYENR-KLILEA 61 I G+FD + +GH+++++R L D + V + + NK+ S + R + I +A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRN-----PNKQPMFSVQERLEQIAKA 56 Query: 62 IRYVDQVIPEHSWEQKIDDIKKYNVDVFVMG 92 I ++ + ++ ++ + G Sbjct: 57 IAHLPNAQVDSFEGLTVNYARQRQAGAILRG 87
>PRPHPHLPASEC#Prokaryotic zinc-dependent phospholipase C signature. Length = 398 Score = 28.8 bits (64), Expect = 0.033 Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 245 EQAMKMLKAKLYQKEVEEKEKQLAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNVETG 304 Q + +L+ L + E E K L ++ E+ GS Y + Y + +DH + +T Sbjct: 44 TQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDTD 103 Query: 305 N 305 N Sbjct: 104 N 104
>SECA#SecA protein signature. Length = 901 Score = 1216 bits (3148), Expect = 0.0 Identities = 450/902 (49%), Positives = 604/902 (66%), Gaps = 67/902 (7%) Query: 1 MVAFLDKVFDA-NKRELKHLEKIANQIEELASDMEKLSDEQLRDKTEEFKQRYQNGESLD 59 ++ L KVF + N R L+ + K+ N I + +MEKLSDE+L+ KT EF+ R + GE L+ Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 60 DLLVEAFAVVREGARRVLGLYPYHVQLMGGITLHEGNIAEMKTGEGKTLTATMPVYLNAL 119 +L+ EAFAVVRE ++RV G+ + VQL+GG+ L+E IAEM+TGEGKTLTAT+P YLNAL Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 120 SGKGVHVVTVNEYLAKRDAEEMGKLYQFLGLTVGLNLTNMSNEEKQAAYAADITYGTNNE 179 +GKGVHVVTVN+YLA+RDAE L++FLGLTVG+NL M K+ AYAADITYGTNNE Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 180 FGFDYLRDNMVLYQEQKVQRPLYFAVIDEVDSILIDEARTPLIISGQAEKSTALYTQANA 239 +GFDYLRDNM E++VQR L++A++DEVDSILIDEARTPLIISG AE S+ +Y + N Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNK 241 Query: 240 FVRTL-----------EKEKDYTYDVKTKSVLLTEDGITKAEKYFHI-------DNLYDI 281 + L + E ++ D K++ V LTE G+ E+ ++LY Sbjct: 242 IIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 301 Query: 282 RNVTINHHINQALKANVAMHRDVDYVVQDGEIIIVDQFTGRLMKGRRFSEGLHQAIEAKE 341 N+ + HH+ AL+A+ RDVDY+V+DGE+IIVD+ TGR M+GRR+S+GLHQA+EAKE Sbjct: 302 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKE 361 Query: 342 GVEIQNESMTMATITFQNYFRMYAKLAGMTGTAKTEEEEFRNIYNMRVVVIPTNRPIIRD 401 GV+IQNE+ T+A+ITFQNYFR+Y KLAGMTGTA TE EF +IY + VV+PTNRP+IR Sbjct: 362 GVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRK 421 Query: 402 DRPDLIYKTMEGKFRAVVEDIKQRHDLGQPILVGTVAIETSELISRMLKKKGVPHNVLNA 461 D PDL+Y T K +A++EDIK+R GQP+LVGT++IE SEL+S L K G+ HNVLNA Sbjct: 422 DLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA 481 Query: 462 KNHAREAEIIKQAGQKGAVTIATNMAGRGTDIKLG------------------------- 496 K HA EA I+ QAG AVTIATNMAGRGTDI LG Sbjct: 482 KFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 541 Query: 497 ----DGVVELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGSD 552 D V+E GGL +IGTERHESRRIDNQLRGRSGRQGD G ++FYLSMED LMR F SD Sbjct: 542 QVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASD 601 Query: 553 NMKSMMERLGMDDTQPIQSKMVSRAVESAQKRVEGNNFDARKQLLQYDDVLRQQREIIYK 612 + MM +LGM + I+ V++A+ +AQ++VE NFD RKQLL+YDDV QR IY Sbjct: 602 RVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYS 661 Query: 613 QRDEVLTADNLREIVEKMIRSVVERVVNANAPLHEDEEEWNLQGIVDYVLTNLLREGDIS 672 QR+E+L ++ E + + V + ++A P EE W++ G+ + + + + I+ Sbjct: 662 QRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIA 721 Query: 673 REDLLGKEPD----EMVDLIMAKVKMRYDEKEEAFGPEQMREFEKVILLRSVDSKWIDHI 728 + L KEP+ + + I+A+ Y KEE G E MR FEK ++L+++DS W +H+ Sbjct: 722 --EWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHL 779 Query: 729 DAMDHLREGIHLRAYGQIDPLREYQSEGFAMFENMVASIEEDTAKYIMKAEI-------- 780 AMD+LR+GIHLR Y Q DP +EY+ E F+MF M+ S++ + + K ++ Sbjct: 780 AAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEE 839 Query: 781 ---QTNLERQEVAKGQAVVPGGEETTVKKKPIRK--KVRIGRNDPCPCGSGKKYKNCHGR 835 Q +E + +A+ Q + +++ + + ++GRNDPCPCGSGKKYK CHGR Sbjct: 840 LEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGR 899 Query: 836 LE 837 L+ Sbjct: 900 LQ 901
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 57.1 bits (138), Expect = 5e-11 Identities = 70/383 (18%), Positives = 133/383 (34%), Gaps = 58/383 (15%) Query: 57 TFLDGFDLTVIAVAMPLILDHWEFGPGMQ-----GLITSSAVIGSFIGAIWLGNLTDKYG 111 LD + +I +P +L + G++ + + F A LG L+D++G Sbjct: 14 VALDAVGIGLIMPVLPGLLR--DLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFG 71 Query: 112 RKAMYVVDLLAFVVFATLTAFALAPWQLALFRFLLGIGIGADYPISATLVSEFSATQSRG 171 R+ + +V L V + A A W L + R + GI GA ++ +++ + R Sbjct: 72 RRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERA 130 Query: 172 RHSTSLGAMWFVGAVVAYLVGILLVPLGENAWRYMLLTGAIFALIVFFFRVTLPESPRWL 231 RH + A + G V ++G L+ +A + + F LPES Sbjct: 131 RHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCF--LLPES---- 184 Query: 232 TARGREKEAEEIMLKITGQKVKIQPNMKPKQKISSLFTKGLFRRTFFVCGFWFCYAVAYY 291 E+ +++ + + R V Sbjct: 185 --HKGERRPL-------------------RREALNPLASFRWARGMTVVAALMAVFFIMQ 223 Query: 292 GISMYTPTILKPFT----HGSQMMVYIGSGTVSLLGLIGAI----IGMNLVERIGRRPLI 343 + + F H + I +++ G++ ++ I + R+G R + Sbjct: 224 LVGQVPAALWVIFGEDRFHWDATTIGI---SLAAFGILHSLAQAMITGPVAARLGERRAL 280 Query: 344 ITSFTGLSIALIILALNPSPTMAFLVILFSFAVLFANMGGGILNFVYPTELFPTGI---- 399 + I+LA MAF ++ VL A GGI + + Sbjct: 281 MLGMIADGTGYILLAFATRGWMAFPIM-----VLLA--SGGIGMPAL-QAMLSRQVDEER 332 Query: 400 RASASGLATAVSRIGSIMGILVF 422 + G A++ + SI+G L+F Sbjct: 333 QGQLQGSLAALTSLTSIVGPLLF 355
>FLAGELLIN#Flagellin signature. Length = 507 Score = 136 bits (343), Expect = 1e-37 Identities = 88/338 (26%), Positives = 136/338 (40%), Gaps = 2/338 (0%) Query: 1 MIINHNIAALNTLNHLNAATNAQSKAMQKLSSGLRINGAADDAAGLAISEKMRSQIRGLD 60 +IN N +L T N+LN + ++ S A+++LSSGLRIN A DDAAG AI+ + S I+GL Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 QATKNSQDATSLLQTAEGALNETHDILQRMRELAVQSSNDTNTDDDRQNIQSEMSQLESE 120 QA++N+ D S+ QT EGALNE ++ LQR+REL+VQ++N TN+D D ++IQ E+ Q E Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 IDRIGNTTQFNTKNLLDGSMGKAVTTAVANENTSGIFKDKGNGNAAATTDTLLTDLTDKD 180 IDR+ N TQFN +L + + T I K + + + + Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEAT 181 Query: 181 GNSLGITAGDKVTVTYVKNGTTTTNSVTVAADTKLSDIGTNLGGTLTANTDGSLKLEAAA 240 L + + G + + + N A Sbjct: 182 VGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDA 241 Query: 241 AGTADAIEGITITVQDQNGNVRTAATNALSSFKETQAAADVRSDGSATFLIGANGGQNLQ 300 + T + G A + D + N G Sbjct: 242 ENNTAV--DLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKV 299 Query: 301 VDINDMRAQALGVSGLQVSTQTQANAAIKVIDNAIQKV 338 + L V+ + A ++ N V Sbjct: 300 STTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSV 337 Score = 99.3 bits (247), Expect = 9e-25 Identities = 69/327 (21%), Positives = 107/327 (32%), Gaps = 9/327 (2%) Query: 97 SSNDTNTDDDRQNIQSEMSQLESEIDRIGNTTQFNTKNLLDGSMGKAVTTAVANENTSGI 156 + D + + ++ N+ T K A + T+ Sbjct: 181 TVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDD 240 Query: 157 FKDKGNGNAAATTDTLLTDLTDKDGNSLGITAGDKVTVTYVKNGTTTTNSVTVAADTKLS 216 ++ + TT + K + T Y T + K+S Sbjct: 241 AENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVS 300 Query: 217 DIGTNLGGTLTANTDGSLKLEAAAAGTADAIEGITITVQDQ---NGNVRTAATNALSSFK 273 TLT + AA + T V Q + + + Sbjct: 301 TTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEA 360 Query: 274 ETQAAADVRSDGSATFLIGANGGQNLQVDINDMRAQALGV------SGLQVSTQTQANAA 327 + + + G + + M + + + Sbjct: 361 NNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANP 420 Query: 328 IKVIDNAIQKVSAERGKLGAFENRLDHTVNNLTTSSENLTSAESRIRDVDMAKEMSEQTK 387 + ID+A+ KV A R LGA +NR D + NL + NL SA SRI D D A E+S +K Sbjct: 421 LASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSK 480 Query: 388 QSILAQAAQAMLAQANQQPQQVLQLLR 414 IL QA ++LAQANQ PQ VL LLR Sbjct: 481 AQILQQAGTSVLAQANQVPQNVLSLLR 507
>SECA#SecA protein signature. Length = 901 Score = 57.6 bits (139), Expect = 5e-11 Identities = 20/23 (86%), Positives = 22/23 (95%) Query: 379 RKIGRNDPCPCGSGKKYKKCCGR 401 RK+GRNDPCPCGSGKKYK+C GR Sbjct: 877 RKVGRNDPCPCGSGKKYKQCHGR 899
>FLAGELLIN#Flagellin signature. Length = 507 Score = 72.4 bits (177), Expect = 2e-16 Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 1/146 (0%) Query: 1 MRVTQSMLANNFLNNLNTSYSKLAKYQEQLSSGKKINKLSDDPLSAMKGISYRRTVAQVK 60 + + L+ NNLN S S L+ E+LSSG +IN DD + + + Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 QYEDNFAEASTWIESTNDALDEANQVLQRIRELTVEGATDTKTPTDRQSIADEVEQLRDQ 120 Q N + + ++T AL+E N LQR+REL+V+ T + +D +SI DE++Q ++ Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 LVNIAN-TKVNDKYIFNGTRTTEKPI 145 + ++N T+ N + + + + Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQMKIQV 147 Score = 28.5 bits (63), Expect = 0.042 Identities = 28/202 (13%), Positives = 53/202 (26%), Gaps = 6/202 (2%) Query: 75 STNDALDEANQVLQRIRELTVEGATDTKTPTDRQSIADEVEQLRDQLVNIANTKVNDKYI 134 + V + + T + D ++ V + Sbjct: 279 DYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVV 338 Query: 135 FNGTRTTEKPISGDISTF-----DGSTSLGMNTNPVKIELSNGIYLQVNANGANAFSDDL 189 +K + + T +N +V G F D Sbjct: 339 NGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKT 398 Query: 190 FKDLNHLISDLKSGTSASGFDSYLGKIDGHIDNVLSELSQAGARSNRLDLMKDRVTQQET 249 ++ LI++ + + + L ID + V + S GA NR D + T Sbjct: 399 ASGVSTLINED-AAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVT 457 Query: 250 TATKIMAGNEDVDIDKAYTDFS 271 + ED D ++ S Sbjct: 458 NLNSARSRIEDADYATEVSNMS 479
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 195 bits (496), Expect = 1e-57 Identities = 136/565 (24%), Positives = 223/565 (39%), Gaps = 62/565 (10%) Query: 6 GLETAKRALTAQQNALYTVGQNVANANTDGYTRQRVNLQASDPYPAASMNRPAIAGQLGT 65 + A L A Q AL T N+++ N GYTRQ + ++ A G +G Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAG-------GWVGN 55 Query: 66 GVEAGEVQRIRDKYLDVQYRENNSAAGYWSAKSGALSKMEAVMDETGTKSSLSNTMEAFW 125 GV VQR D ++ Q R + + +A+ +SK++ ++ + SSL+ M+ F+ Sbjct: 56 GVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTS--TSSLATQMQDFF 113 Query: 126 ESLQDLSTNPEDVSARSVVLERGQTLTDTFHYLNSTLSQYKTDVGSEISVSVNDINSTLK 185 SLQ L +N ED +AR ++ + + L + F + L V I SV+ IN+ K Sbjct: 114 TSLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAK 173 Query: 186 QISDLNKQIAELEPNGYL--PNDLYDKRDSLVDKLSSYLNVTVEVQKSGGNPKANADGIY 243 QI+ LN QI+ L G PN+L D+RD LV +L+ + V V VQ G Y Sbjct: 174 QIASLNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQD---------GGTY 224 Query: 244 NIKMTAADGTSVYLVQGSNYN---AVEVQGGTDSNGDGILDGPPANGEMT-GITIGGKNF 299 NI M LVQGS AV +DG N E+ + G Sbjct: 225 NITM----ANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLG 280 Query: 300 AV-----------ADTTGKVTFPQGKLLGLIDSYGYQYAGANG----TVEAGAYPSLLDS 344 + +T G++ + G+ G G + A + Sbjct: 281 GILTFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKN 340 Query: 345 LDKLAYTFGNVLNAVHEKGTDLKGNAGTAFFTFGTLTDYKGAAGQIAVNSSLTYD--KIA 402 +A V +A TD K + + L N + +D ++ Sbjct: 341 KGDVAIGA-TVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELT 399 Query: 403 ASSNGDSGDGL------NAINLANVVTFD---LSSQSVQLEGISGRLNIAA-LGLPLAS- 451 + D +AI +V+ D ++ S + G S N A L L S Sbjct: 400 FTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSK 459 Query: 452 -----GTITSNYEGLIGKLGVDAEQAGNMQTNTASLLDSVDMNRKSVSSVSVDEELTNMI 506 + Y L+ +G +++ + ++S+S V++DEE N+ Sbjct: 460 TVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQ 519 Query: 507 KYQQAYNAAARMITMTDEMLDKIIN 531 ++QQ Y A A+++ + + D +IN Sbjct: 520 RFQQYYLANAQVLQTANAIFDALIN 544
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 41.6 bits (98), Expect = 6e-06 Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 21/158 (13%) Query: 4 DTLIKNGKVVFRNSVKIADLAIQNGKIAVIA-----------DKIEETAEQVYDASDQYV 52 DT+I N ++ + AD+ +++G+IA I I +V + V Sbjct: 69 DTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIV 128 Query: 53 MPGMVDIHVHMCEPGRTEWEGFETGTKALAAGGTTTYVDMPLNALPATTT---KDALEKK 109 G +D H+H P + E E +G + GGT P + ATT + + Sbjct: 129 TAGGMDSHIHFICPQQIE-EALMSGLTCMLGGGTG-----PAHGTLATTCTPGPWHIARM 182 Query: 110 LAAAAGKNYVDYAFYGGLVPGNLDQLKELSDCGVVAYK 147 + AA ++ AF G L E+ G + K Sbjct: 183 IEAADAFP-MNLAFAGKGNASLPGALVEMVLGGATSLK 219
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.038 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 28 KGEFC-TFIGPSGCGKSTLLNIIAGIEKANGGKVLLDGKPDGVQDAAGF 75 K ++ G G GKSTL+N + G++ + + D + AG Sbjct: 594 KFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGI 642
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 32.0 bits (73), Expect = 0.003 Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 12/157 (7%) Query: 92 EKAIQLNTILLKQNIHPVIESFETPGINFTYRILFYVFPFLMPLLIAVLIGDISTRDKQG 151 E +L I +Q+ P ++ N L F PLL + I++ Q Sbjct: 51 EHFSKLMLIPAEQSYLPFSQALSYVVDNV----LLEFFYLCFPLLTVAALMAIASHVVQY 106 Query: 152 GINHFVNVLPVKLKKILDA----RIFT--SFVYSLAITIVILVVALIIGSIISHLGSWKY 205 G + +KKI RIF+ S V L + +++++++I II G+ Sbjct: 107 GFLISGEAIKPDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIII--KGNLVT 164 Query: 206 PVAINLNGTEVLWISIARFLGRSLLLILCLLLFISVF 242 + + G E + + + L + +++ + IS+ Sbjct: 165 LLQLPTCGIECITPLLGQILRQLMVICTVGFVVISIA 201
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.5 bits (183), Expect = 1e-17 Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 17/151 (11%) Query: 3 ILIVDDEILELEQLVFLIRQRYPEWELFEAEDAVQAKKMLENHPIDLSFLDIRLPGESGL 62 IL+ DD+ L + + +++ +A + + DL D+ +P E+ Sbjct: 6 ILVADDDAAIRTVLNQALSRA--GYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 ELCAYIRENYKS-ECVMITAHADFQYAQHAIKLHVFDYLVKPIITEELYRMLENYVNKY- 120 +L I++ ++++A F A A + +DYL KP EL ++ + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 121 -------------GYIEGLSSDIQEVIRIIR 138 + G S+ +QE+ R++ Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLA 154
>PF06580#Sensor histidine kinase Length = 349 Score = 164 bits (417), Expect = 3e-51 Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 4/238 (1%) Query: 6 FTILVMLSLGAPIAAYVVL--LLLGFLDKELDYLQLENKKMEMEKELHRVEYLQLSQQIQ 63 FT+ + LS+ + + LL +Y Q E + +M + + L QI Sbjct: 112 FTLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQIN 171 Query: 64 PHFLFNSLNAMLSLNRLGRTKDLTHALEEFSKFLRYKYTEKDA-LVAFEEELAYTSHYIS 122 PHF+FN+LN + +L TK L S+ +RY +A V+ +EL Y+ Sbjct: 172 PHFMFNALNNIRALILEDPTK-AREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQ 230 Query: 123 IQQIRFGNRLKVKIDIQEDARRTYMPPYMMQTLVENAFKHGLEKQPGEKYLQIGLEREGN 182 + I+F +RL+ + I +PP ++QTLVEN KHG+ + P + + ++ Sbjct: 231 LASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNG 290 Query: 183 WVILFVADNGPGSENASFGVLGVGLINVKRRLELIYDLHSELSINREAGSTILTVKWP 240 V L V + G + + G GL NV+ RL+++Y +++ ++ + G V P Sbjct: 291 TVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 26.7 bits (58), Expect = 0.008 Identities = 10/29 (34%), Positives = 21/29 (72%) Query: 8 ELKQEAREEGRKEGLQEGKREGRQEGKIE 36 +L+ +A E+G + G+ EG+++G ++G E Sbjct: 46 QLQMQAHEQGYQAGIAEGRQQGHKQGYQE 74 Score = 25.5 bits (55), Expect = 0.016 Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 12 EAREEGRKEGLQEGKREGRQEGKIE 36 E R++G K+G QEG +G ++G E Sbjct: 62 EGRQQGHKQGYQEGLAQGLEQGLAE 86
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 42.7 bits (100), Expect = 3e-06 Identities = 32/125 (25%), Positives = 42/125 (33%), Gaps = 32/125 (25%) Query: 12 AVLEQEVATLKTDLAAKQGNQPAKREAGQSAIPTTTGTPDKRVEKTAPRIEDAETPVQKT 71 A LE E LK LA KQ + AK AG + + TPD + + Q Sbjct: 435 AKLEAEAKALKEKLA-KQAEELAKLRAG---KASDSQTPDAKPGN-----KAVPGKGQAP 485 Query: 72 PVQAKPEPVDWEYRLGRVWLPRI------FIFVLLLGIIFAFTIVAIAGTELIRVLLGFG 125 KP + + LP F FT A+ V+ G Sbjct: 486 QAGTKPNQNKAPMKETKRQLPSTGETANPF-----------FTAAALT------VMATAG 528 Query: 126 VAAVL 130 VAAV+ Sbjct: 529 VAAVV 533
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 414 bits (1065), Expect = e-142 Identities = 145/366 (39%), Positives = 203/366 (55%), Gaps = 31/366 (8%) Query: 255 RLQQDALSAREEKTDSKKIPDQAGFTQILGTSESISRVKRLARRAARTSATVLITGESGT 314 + AL+ + + K D ++G S ++ + R+ R +T T++ITGESGT Sbjct: 113 GIIGRALAEPKRRPS-KLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGT 171 Query: 315 GKELFAKSIHQLSPYARGPFITVNCAAIPEPLFESELFGYEEGAFTGAKKGGKLGKFELA 374 GKEL A+++H GPF+ +N AAIP L ESELFG+E+GAFTGA+ G+FE A Sbjct: 172 GKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRST-GRFEQA 230 Query: 375 ENGTLFLDEIGELSPAMQTKLLRAIQEKEAERVGGVKKYKTNVRIVAATNRNLEEMVEAG 434 E GTLFLDEIG++ QT+LLR +Q+ E VGG +++VRIVAATN++L++ + G Sbjct: 231 EGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQG 290 Query: 435 TFRADLYYRLNIIRIHLPPLRERKEDIPDLVSHFLKAFCRRYDLPEKRISSEAVAAMMAY 494 FR DLYYRLN++ + LPPLR+R EDIPDLV HF++ + L KR EA+ M A+ Sbjct: 291 LFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAH 349 Query: 495 GWKGNVRELANTVERLVTLADGPEISRGDLPEAIHEVQPAKDIYAESLISRA-------- 546 W GNVREL N V RL L I+R + + P I + S + Sbjct: 350 PWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVE 409 Query: 547 --------------------REAGEAQEKALIIRALKNAGGNKTKAAELLGIHRTTLYQK 586 E LI+ AL GN+ KAA+LLG++R TL +K Sbjct: 410 ENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKK 469 Query: 587 IKKYNL 592 I++ + Sbjct: 470 IRELGV 475
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 34.0 bits (77), Expect = 6e-04 Identities = 15/46 (32%), Positives = 29/46 (63%) Query: 232 DPDEAEQVLKLPNSYFDRGYRKGKEEGREEGREEGREEGREEGEEK 277 +P +Q+ +L ++GY+ G EGR++G ++G +EG +G E+ Sbjct: 37 EPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQ 82
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 395 bits (1017), Expect = e-135 Identities = 129/355 (36%), Positives = 198/355 (55%), Gaps = 34/355 (9%) Query: 227 TEKPEQAGRRLYHFEDILGVSEILKQTIQSAKRVSKSDVTIMLRGESGTGKEMFAQAIHH 286 +P + ++G S +++ + R+ ++D+T+M+ GESGTGKE+ A+A+H Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD 182 Query: 287 ESERKNQPFVALNCAAIPENLLESELFGYEKGAFTGAEKEKPGRFELANHGTLFLDEIGD 346 +R+N PFVA+N AAIP +L+ESELFG+EKGAFTGA+ GRFE A GTLFLDEIGD Sbjct: 183 YGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGD 242 Query: 347 MSLYLQAKILRVLQEKTLERIGSNKSRKIDVRIITATHRNLEELIRKGEFREDLYYRISV 406 M + Q ++LRVLQ+ +G + DVRI+ AT+++L++ I +G FREDLYYR++V Sbjct: 243 MPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNV 302 Query: 407 IPIYIPPLRARKEDLPILIEHFIQKFSKDLNRDSKNLAAETLDRLMQYDWPGNIRELQNV 466 +P+ +PPLR R ED+P L+ HF+Q+ K+ D K E L+ + + WPGN+REL+N+ Sbjct: 303 VPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVRELENL 361 Query: 467 VRHFVELQIGDTVTLESLPSSLQRGAKSFPPSVKPKRTNH-------------------- 506 VR L D +T E + + L+ P R+ Sbjct: 362 VRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGD 421 Query: 507 ----------YQTRLEKRKVLELLERNGWSTEGKKKTAADLGISLATLYRYLKKI 551 +E +L L + + K A LG++ TL + ++++ Sbjct: 422 ALPPSGLYDRVLAEMEYPLILAALTATRGN---QIKAADLLGLNRNTLRKKIREL 473
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.7 bits (59), Expect = 0.007 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Query: 13 SMLILAGILLILGFLSGNLM-MWIMALTIGILV 44 +L IL G+ S N + M+ M L IG+LV Sbjct: 375 VLLGTFAILAAFGY-SINTLTMFGMVLAIGLLV 406
>PF05043#Transcriptional activator Length = 493 Score = 30.7 bits (69), Expect = 0.023 Identities = 19/141 (13%), Positives = 49/141 (34%), Gaps = 19/141 (13%) Query: 26 ISLETVGQLLSKKEEEIRKMIERINSVLPGG---SIQIQDNKILVSGAGIEESFDMLTLQ 82 + +LL+ E ++ + + S P S I + IE + + Sbjct: 26 FHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNGIRIINTDDSDIEMVYHHF-FK 84 Query: 83 EKSFLQEYEVELRRNLIMYRLLTHQDPSSLQQLSEQFFVSRNTAFTDIKKIKELFRHDP- 141 + + + + + + ++F++S ++ + I +I ++ + Sbjct: 85 HSTHFS-----------ILEFIFFNEGCQAESICKEFYISSSSLYRIISQINKVIKRQFQ 133 Query: 142 IQLSYSRKGGYQFKGPEMIIR 162 ++S + Q G E IR Sbjct: 134 FEVSLTPV---QIIGNERDIR 151
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 156 bits (395), Expect = 1e-42 Identities = 67/275 (24%), Positives = 122/275 (44%), Gaps = 27/275 (9%) Query: 104 FRKLIGYDKSLKEVLEQMKTAIFYPDNGLPIMLLGPTGIGKTYLARLMYEYTKAKKRIKQ 163 L+G +++E+ + + L +M+ G +G GK +AR +++Y K ++ Sbjct: 136 GMPLVGRSAAMQEIYRVLARLM---QTDLTLMITGESGTGKELVARALHDYGK-----RR 187 Query: 164 DAPFYVFNCAQYANNPELLTSYLFGHVKGAYTGADKDKAGLLELADEGILFLDEAHRLNR 223 + PF N A A +L+ S LFGH KGA+TGA G E A+ G LFLDE + Sbjct: 188 NGPFVAINMA--AIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPM 245 Query: 224 EGQEKLFTFMDQGTFYRLGDTEIARKAKVRLVFATTE------KTNSFLETFLRRI-PIK 276 + Q +L + QG + +G ++ VR+V AT + F E R+ + Sbjct: 246 DAQTRLLRVLQQGEYTTVGGRT-PIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVP 304 Query: 277 VSVPSLDERGPFEKSQLIEHFFMEESQLFQLPIEVSHQTLDALHKYHYEGNIGECKNMIK 336 + +P L +R + L+ HF + + + L+ + + + GN+ E +N+++ Sbjct: 305 LRLPPLRDR-AEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVR 363 Query: 337 YTCGSAYAKAAKGSDKIKVTLQDLPKEMLKNAPQL 371 A + +T + + E+ P Sbjct: 364 R----LTALYPQDV----ITREIIENELRSEIPDS 390
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 35.5 bits (81), Expect = 0.001 Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 25/148 (16%) Query: 825 LAGKASAFLT--------AAKQNGINEIYLIAHALLETGNGTSQLANGVKYNGKTVYNMY 876 L G + AFL A++Q+G+ ++A A LE+G G Q+ NG+ YN++ Sbjct: 145 LPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRE---NGEPSYNLF 201 Query: 877 GTGANDGNAVQNGARYAYQHGWTTPEAAIIGGAKF-ISSNYLGAGQDTLYKMRWNPDVAA 935 G A + G A AKF + S+YL A D + + NP AA Sbjct: 202 GVKA---SGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAA 258 Query: 936 -TYGYASHQ---------YATDIGWAYK 953 T ++ Q YATD +A K Sbjct: 259 VTTAASAEQGAQALQDAGYATDPHYARK 286
>YERSINIAYOPE#Yersinia virulence determinant YopE protein signature. Length = 219 Score = 38.2 bits (88), Expect = 2e-05 Identities = 21/80 (26%), Positives = 30/80 (37%) Query: 28 LSKQEIANMLHLSLPTVSQHLTQLEKKNLIQKSGYFESSVGRRAAAYTVCQQARIGIGVE 87 I + +LP Q L L+ + L + F + G + T CQ G E Sbjct: 101 SFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGE 160 Query: 88 IQKEKVRILAVDLRGTVFQQ 107 +Q E IL + G F Q Sbjct: 161 LQAEASAILNTPVCGIPFSQ 180
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 130 bits (329), Expect = 3e-39 Identities = 74/259 (28%), Positives = 124/259 (47%), Gaps = 17/259 (6%) Query: 9 LDGKKIFVTGGARGIGKSVATAFAEAGADIAIVDVDLKEAEK--TARELQENHPVQAIAV 66 ++GK F+TG A+GIG++VA A GA IA VD + ++ EK ++ + + H Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA---F 62 Query: 67 QADVTKPRDVKATTTKILDAFGRIDVAFCNAGICLNVPAEEMTFEQWKKVIDVNLTGIFL 126 ADV + T +I G ID+ AG+ ++ E+W+ VN TG+F Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 127 TAQAAGKVMIQQGGGSIINTASMSGHIVNVPQPQCS-YNASKAGVIQLTKSLAVEWADKN 185 +++ K M+ + GSI+ S VP+ + Y +SKA + TK L +E A+ N Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAG---VPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 186 VRVNCISPGYMGTELTLN--------SPSLKPLIEQWNKMAPLHRMGKPEELQSICVYLA 237 +R N +SPG T++ + +K +E + PL ++ KP ++ ++L Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 238 GDTSTFTTGADFVVDGAFT 256 + T + VDG T Sbjct: 240 SGQAGHITMHNLCVDGGAT 258
>INTIMIN#Intimin signature. Length = 939 Score = 39.3 bits (91), Expect = 7e-05 Identities = 49/253 (19%), Positives = 81/253 (32%), Gaps = 42/253 (16%) Query: 588 KLVVYAEDAAGNKSAETTVTVIDKTAP-----------AAPKVNEVSDASTAVT------ 630 K+ A D GN S +T+ + A K + +D + A+T Sbjct: 526 KVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVK 585 Query: 631 --GTTEAGAKV--TVKSGSKILGTATADKNGAFKVTIAKQKAGTTLTAYATDKAGNTSAG 686 G +A V + SG+ +L +A+ NG+ K T+ + + A TSA Sbjct: 586 KNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSAL 645 Query: 687 KSFKV-------EDKTAPSAPSVNRFGDNQTTIT--------GKAEAGAKVTIKR--GKT 729 + V T A + Q IT K + +VT GK Sbjct: 646 NANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKL 705 Query: 730 VLGTGTASSKGTFSVKIKSKQKAGTVLTAYATDKAGNTGAGKSFKVVDKTAPGIPTAGKV 789 T + G V + S ++++A + + V+ G + Sbjct: 706 SNSTEKTDTNGYAKVTLTSTTPGKSLVSA----RVSDVAVDVKAPEVEFFTTLTIDDGNI 761 Query: 790 TYKSTTVSGKAEK 802 T V GK Sbjct: 762 EIVGTGVKGKLPT 774 Score = 30.4 bits (68), Expect = 0.037 Identities = 51/289 (17%), Positives = 82/289 (28%), Gaps = 22/289 (7%) Query: 403 SINIKGGGAIVKALSSKDDFQVPSD---KGTDITYTLLEKGDAGAVTSLSKPSVQTVGDN 459 S NI G A++ A S+ + + K ++ A ++L+ +V V Sbjct: 597 SFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQT 656 Query: 460 DTVVTGTADPNVTVKVAVSGKEIGSNSTDSNGSFSVSIPKQKAGTEL-HVHTEDGKGNQS 518 +T + T VA I G VS + T L + K + + Sbjct: 657 KASIT-EIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTN 715 Query: 519 EETVVTVQDKTAPAAPKVNEVSDASTAVKGTTEAGAKVTVKSGSNILGTATADSTGAFKA 578 VT+ T + VSD + VK NI T Sbjct: 716 GYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTV 775 Query: 579 TIAKQKVGTKLVVYAEDAAGNKSAETTVTVIDKTAPAAPKVNEVSDASTAVTGTTEAGAK 638 + +V K A+G T + A V +S VT + Sbjct: 776 WLQYGQVNLK-------ASGGNGKYTWRSANPAIAS-------VDASSGQVTLKEKGTTT 821 Query: 639 VTVKSGSKILGTATADKNGAFKVTIAKQKAGTTLTAYATDKAGNTSAGK 687 ++V S T T + I + A + N Sbjct: 822 ISVISSDNQTATYTIATPNSL---IVPNMSKRVTYNDAVNTCKNFGGKL 867
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 28.8 bits (64), Expect = 0.030 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 22/111 (19%) Query: 41 GYSEQDPEQWVEKTIQALKELTEKSGVPRDEIEGLSFSGQMHG-LVLLDENLQVIRNAI- 98 GYSE + +W E +A D +SF G +G V+ + + + A Sbjct: 73 GYSE-EKGEWKEAEGKAYF-----VNGSTDGYLKVSFFGPFYGSYVVFELDRENYSYAFV 126 Query: 99 -------LWNDTRTTEQCKKIDQVLGGKLLEITKNPALEGFTLPKILWVQQ 142 LW +RT + I K +E++K GF ++++VQQ Sbjct: 127 SGPNTEYLWLLSRTPTVERGILD----KFIEMSKE---RGFDTNRLIYVQQ 170
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 30.2 bits (68), Expect = 0.018 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 12/103 (11%) Query: 318 KIGKRNTMLMGMILAILGQLILG--VGAHTLSITTIIIATIVGYLGTGYVSGLIAVMLAD 375 + G + +G+ + L + + +T II+ + G T V I Sbjct: 319 RRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLK 378 Query: 376 SVDYGEWKNGVRAEGIVTSFSSFSAKLGMGLGGAITGAILSAG 418 + G S +F++ L G G AI G +LS Sbjct: 379 QQE----------AGAGMSLLNFTSFLSEGTGIAIVGGLLSIP 411
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 31.6 bits (72), Expect = 0.007 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 11/72 (15%) Query: 4 LIKNGIVVTAADTYEADLLVDGEKIIEIGRNLTAD-----------DAEIIDAKGAYIFP 52 +I N +++ +AD+ + +I IG+ D E+I +G + Sbjct: 71 VITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTA 130 Query: 53 GGVDPHTHLDMP 64 GG+D H H P Sbjct: 131 GGMDSHIHFICP 142
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 34.1 bits (78), Expect = 5e-04 Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 401 LGELYFEFGQYDRALDCFSWEMELRENDPAPVKWLSKIYHELGMQAESNAYRNLYIDM 458 LG GQYD A+ +S+ + +P ++ + G AE+ + L ++ Sbjct: 76 LGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 28.2 bits (63), Expect = 0.023 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 23/130 (17%) Query: 1 MKVLVAGANGKIGKMLVD-LLQKSDRHIP-------RAMVRKEEQAQFFRQKGVDAVISD 52 MK LV GA G IG + LL+ + + + K+ + + Q G D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 53 LEGTVDELAE--AANGCDCIVFTAGSGG--------HTGADKTLLVDLDGAVKTMEAAEK 102 L + + + A+ + + + H AD +L G + +E Sbjct: 61 LA-DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYAD----SNLTGFLNILEGCRH 115 Query: 103 AGISRFVIVS 112 I + S Sbjct: 116 NKIQHLLYAS 125
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 30.3 bits (68), Expect = 0.011 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 17/136 (12%) Query: 172 SGIDMMAVISNDPIWFEKGKAARPLPFSLPFYLVVADSGRVHNTAMAVGSIREKSGSDPK 231 +MA I N + E A+ + +V+ R+ A++ G++ + P+ Sbjct: 242 DLTRLMAEIENLTV--ETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQ 299 Query: 232 TVESAINRLGEIV----------HEAGRALIEKDGLHLGRLFNEAHAQLSVLGVSDEGLN 281 ++ A G+ E + I + G A L+ +G+ +G+ Sbjct: 300 VIQPAPFSRGQTAVQPQTDIMAMQEGSKVAIVE-----GPDLRTLVAGLNSIGLKADGII 354 Query: 282 ALCAAARSAGALGAKL 297 A+ +SAGAL A+L Sbjct: 355 AILQGIKSAGALQAEL 370
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 47.6 bits (113), Expect = 1e-09 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 6/112 (5%) Query: 33 NLEKAKEIVASLLKKGCSYFVAVEDQQVLGWILTGISKDSFTEKSVGFIYELFVKEEFRG 92 E V+ + ++G + F+ + +G I K I ++ V +++R Sbjct: 49 QYEDDDMDVSYVEEEGKAAFLYYLENNCIGRI-----KIRSNWNGYALIEDIAVAKDYRK 103 Query: 93 KGIAKELMLYAKHSLKEEGLTEIRLNVYEGN-PAIRLYEKLGFQVRSVSMAL 143 KG+ L+ A KE + L + N A Y K F + +V L Sbjct: 104 KGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTML 155
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 52.9 bits (127), Expect = 1e-09 Identities = 50/317 (15%), Positives = 119/317 (37%), Gaps = 31/317 (9%) Query: 44 TGLLILINVFTGITMSLLSGYIADQYGRRNVMITAESLRLCSFFIMTVSNSPWFESYGLT 103 G+L+ + + + G ++D++GRR V++ + + + IM + W + Sbjct: 45 YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW-----VL 99 Query: 104 FIAMCMNSVCWGLAGPANQAMLIDVSTPDQRKTIYSIMYWANNISMSIGGIIGAFFFKRY 163 +I + + G G A + D++ D+R + M M G ++G Sbjct: 100 YIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFS 158 Query: 164 LFQLFLILTLMTAIILIVIFLFIKETHKPSKSIATPKMTPRKHILEVYYTYKKVVQDRLF 223 F + + + + E+HK + + + VV + Sbjct: 159 PHAPFFAAAALNGLNFLTGCFLLPESHKGERRPL-RREALNPLASFRWARGMTVVAALMA 217 Query: 224 ISFLTAAVLLLSLENQLTNYIGIKLDKHMPIQDFLLWKID----GSTMMGLLRSENTILV 279 + F+ ++L +P ++++ D +T +G+ + IL Sbjct: 218 VFFI------------------MQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILH 259 Query: 280 ALI-ALFSAKLTQKYKDKNILVVNCFIYTIGFSGIAFSNNIWVLFIMMALHTLGEVLLAP 338 +L A+ + + + ++ L++ G+ +AF+ W+ F +M L G + + Sbjct: 260 SLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPA 319 Query: 339 VQESYMATIPPENARGA 355 +Q + ++ E +G Sbjct: 320 LQ-AMLSRQVDEERQGQ 335 Score = 36.7 bits (85), Expect = 1e-04 Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 14/179 (7%) Query: 232 LLLSLENQLTNYIGIKLDKHMPIQDFLLWKIDGSTMM----GLLRSENTILVALIALFSA 287 L++ L + +GI L MP+ LL + S + G+L + ++ A Sbjct: 7 LIVILSTVALDAVGIGLI--MPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 288 KLTQKYKDKNILVVNCFIYTIGFSGIAFSNNIWVLFI--MMALHTLGEVLLAPVQESYMA 345 L+ ++ + +L+V+ + ++ +A + +WVL+I ++A T V +Y+A Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGAT---GAVAGAYIA 121 Query: 346 TIPPENARGAYLAFYNLQYDLCMIIVGITVSLSGFLS---PFVMAWILTVIGLLGTFIF 401 I + R + F + + M+ + L G S PF A L + L Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL 180
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.9 bits (114), Expect = 3e-08 Identities = 59/314 (18%), Positives = 104/314 (33%), Gaps = 19/314 (6%) Query: 10 MSFLVRFFNSLGFYIFTPLLALWLTE-TKSLDL-SKASIIVASLTLFSKAGGAFVGGLID 67 + +++G + P+L L + S D+ + I++A L A +G L D Sbjct: 9 VILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSD 68 Query: 68 RLGVRLSLILGLWSSGGILMLIPIVPYFPLFIALSALLGTTISLYNVALKTQISFMNEHK 127 R G R L++ L + ++ P+ + + G T + VA + + Sbjct: 69 RFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDE 128 Query: 128 RLRAFALLNIAVNLGASIGPLAGGWILDLKSLWLMFLAAGSYFIAGGVACLLPEPPMEKE 187 R R F ++ G GP+ GG + F AA + C L + E Sbjct: 129 RARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGE 188 Query: 188 ENRLNLFKYLYLERYHLLKSPFFRFLFGSGLLW---FFYIQMFSTLPVYV-------SGE 237 L E + L S + FF +Q+ +P + Sbjct: 189 RRPLR------REALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFH 242 Query: 238 ISGKTTGLVFTLNAVTVIAFQG-IFPSVQPKLKKEQWYALSFLLFGSSFFLLWIDRTVFS 296 T G+ + Q I V +L + + L + G+ + LL + Sbjct: 243 WDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWM 302 Query: 297 IFLSMFLFSLSEII 310 F M L + I Sbjct: 303 AFPIMVLLASGGIG 316
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 49.6 bits (118), Expect = 6e-10 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%) Query: 2 ATAIRLFEQFGVEQVSMNQIATEAGIGPGTLYRRYRNKGELCLDLIKGNVVSCFKDIQTY 61 A+RLF Q GV S+ +IA AG+ G +Y +++K +L ++ + + + + Y Sbjct: 18 DVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEY 77 Query: 62 LEHNRKEPPEQRLKGALRIF---------LRFRESKMQLLKGVEDAGTTNRKKAGTRSPL 112 +P + + + E + V + + + Sbjct: 78 QAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLES 137 Query: 113 YDELHRLLVELYHEMNNEKEAVRNNVFKADMLLEALKSDAYLY 155 YD + + L K + + AD++ Y Sbjct: 138 YDRIEQTL----------KHCIEAKMLPADLMTRRAAIIMRGY 170
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 46.5 bits (110), Expect = 1e-08 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 76 PSVQPLENEP---VVTKYRISAFSGSNLEMILKAQEIDTLILSGITTSGVVLSTLREAAD 132 + L E V+TK+R SAF +NL +++ + D LI++GI L T EA Sbjct: 107 KIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFM 166 Query: 133 KDYSLIVLRDACHDGNPDIHHMLME 157 +D + DA D + + H M +E Sbjct: 167 EDIKAFFVGDAVADFSLEKHQMALE 191
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 70.3 bits (172), Expect = 2e-15 Identities = 60/267 (22%), Positives = 103/267 (38%), Gaps = 16/267 (5%) Query: 33 IGPALGGVLIGAGGWKSIFIVNIPLSLACILLGYFRFPKAPPEAVEGKKLLAIDFTGIAL 92 +GPA+GG++ W + ++ + + L + V K D GI L Sbjct: 154 VGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKL-----LKKEVRIKGHF--DIKGIIL 206 Query: 93 FGITLTSLLLFLMHPSLSKIAFLIVAGIAGAIFAAAELKIKNPFIDIRVFSGNIPLVLTY 152 + + +LF + I+FLIV+ ++ IF K+ +PF+D + NIP ++ Sbjct: 207 MSVGIVFFMLFT---TSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGK-NIPFMIGV 262 Query: 153 ARGLLSGLVAYSFIYGFPQWLEDGRGLS-ASSGGLLMLPMSLTAIAVTRVTGK---SPAI 208 G + F+ P ++D LS A G +++ P +++ I + G Sbjct: 263 LCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGP 322 Query: 209 RLKLIAGSIVQFIAVSLLLFTHHTTSVVLIAFIVLLLGIPQGLLNLGNQNAVYYQANPQQ 268 L G ++ F TTS + IV +LG + + V Q+ Sbjct: 323 LYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIS-TIVSSSLKQQE 381 Query: 269 IGASAGLLRTFMYLGAILASAANGLFL 295 GA LL +L A G L Sbjct: 382 AGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 58.0 bits (140), Expect = 2e-11 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 9/207 (4%) Query: 4 VFLLTIGMFTLGFDAYVMAGLLPDIGATFKIIDSQTGQAVTIFTLCFALAAPIFATLLAG 63 + L I F + V+ LPDI F + T T F L F++ ++ L Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 64 KPTRSILVLALAVFSLGNAGSALAPNFLFLLI-ARAIAGIGAGLYSPLATAAASSLVSDK 122 + +L+ + + G+ + +F LLI AR I G GA + L + + + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 123 KRGRALGMTLGGMSMGTVVGVPLGLIVAAHAGWDGTLWLITILGLIAMIGIVIWFPNIPA 182 RG+A G+ ++MG VG +G ++A + W L + I I + ++ Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMI--TIITVPFLMKL----- 188 Query: 183 SPPPSLRQRLAMLANGRVTATVGITFV 209 +R + G + +VGI F Sbjct: 189 -LKKEVRIKGHFDIKGIILMSVGIVFF 214
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 25.5 bits (55), Expect = 0.019 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 6/33 (18%) Query: 6 EKRNREKEANYFFEFLKIQKHFFKDLMNNLKKV 38 KRN + E N K +K FKD +NNL K Sbjct: 43 IKRNHKTEKN------KTEKEKFKDSINNLVKT 69
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 30.9 bits (70), Expect = 0.021 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 9/54 (16%) Query: 582 SFAFSKSRAQTIARTEIL---GA----ARTGQFYGDVQSGMVIGKTWRSAHDSK 628 +FA S+ R +TIA +IL GA + Q G V G V +TW++A K Sbjct: 333 AFAESRIRKETIAAEDILHDIGAFSIISSDSQAMGRV--GEVAIRTWQTADKMK 384
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 29.6 bits (66), Expect = 0.013 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 234 EMQTAVTEDERETHDITDEVDDEPEVIDYHPEPEEKKEEV---GPDPQPETENEKQSVKE 290 E AV + E EP P ++ P P+P + ++Q ++ Sbjct: 56 EPPQAVQPPPEPVVEPEPEP--EPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 113 Query: 291 MKDNEFP 297 +K E Sbjct: 114 VKPVESR 120
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 136 bits (343), Expect = 9e-41 Identities = 72/257 (28%), Positives = 118/257 (45%), Gaps = 8/257 (3%) Query: 41 GKVAIVTGGGGGIGREACLKLAAGGANVVVADLSDELGEETAGKIRENGGEAIFVRTDVS 100 GK+A +TG GIG LA+ GA++ D + E E+ ++ A DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 101 KSKDVQHYVRTALDTYGKIDILLNNAGWEGKMKPLIDYPEEVFDKLMGINVRGVFLGMKY 160 S + G IDIL+N AG + + +E ++ +N GVF + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 161 VLPHMISQKSGTIVNTASVAGLVGTPEMVAYGASKHAVIGMTKTAGIEAAPSGVRVNAVC 220 V +M+ ++SG+IV S V M AY +SK A + TK G+E A +R N V Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 221 PGVVDTEMMRKIESGFAGGDSAAAEQTR---QQMAASAPTGRYTQPEEVANVLLYLASDL 277 PG +T+M + + ++ A + + + P + +P ++A+ +L+L S Sbjct: 187 PGSTETDMQWSLWA----DENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 278 SSHIIGQTVVIDGGAVL 294 + HI + +DGGA L Sbjct: 243 AGHITMHNLCVDGGATL 259
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.3 bits (84), Expect = 4e-04 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 162 LDSLARDLTAIARE-DSLDPVIGRSKEIQRVIEVLSRRTKNN-PVLI-GEPGVGKTAIAE 218 L R + + + P++GRS +Q + VL+R + + ++I GE G GK +A Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 219 GLAQQ 223 L Sbjct: 179 ALHDY 183 Score = 36.3 bits (84), Expect = 5e-04 Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 30/162 (18%) Query: 509 VIGQEEAVLAVAKAVRR-ARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEAMFGDEDA 567 ++G+ A+ + + + R + L + + G +G GK +ARAL + Sbjct: 139 LVGRSAAMQEIYRVLARLMQTDL--------TLMITGESGTGKELVARALHDYGKRRNGP 190 Query: 568 MIRIDMSEYMEKHSTSRLVGSPPGYVGFEEGGQLTEKVRRKPYSV-------VLLDEIEK 620 + I+M+ S L G E G T R + LDEI Sbjct: 191 FVAINMAAIPRDLIESELFGH--------EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGD 242 Query: 621 AHPDVFNILLQVLDDG---RLTDSKGRTVDFSNTIVIMTSNV 659 D LL+VL G + D ++ +N Sbjct: 243 MPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATNK 281
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 26.1 bits (57), Expect = 0.032 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 8/34 (23%) Query: 1 MRGMGNMGNMQKMMKQM--------QKMQKEMME 26 M M +Q ++ M Q++ +EMM Sbjct: 377 YTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMA 410
>adhesinb#Adhesin B signature. Length = 310 Score = 32.9 bits (75), Expect = 0.001 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 1 MKK--FAILLLGLILVLAGCGAKNNSSSTSTKTIKVGTTTSEVPTWNLIQKLAKKK 54 MKK F +LLL + LA C ++ +S+ T + + V T S ++ + +A K Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVATNS--IIADITKNIAGDK 54
>PF06580#Sensor histidine kinase Length = 349 Score = 219 bits (560), Expect = 5e-68 Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 17/265 (6%) Query: 355 AAIVLPLFVREQVAGTLKLYFTSASQLSAVEQELAEGLSKLFSNQLELAEAELQ----RK 410 + L F+ + S V + L + +AE+ Sbjct: 97 SIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMAS 156 Query: 411 LLKDAEIKALQAQVHPHFFFNAINTITCLVRTDADKARELLVQLAAFFRSNLQGAGKMLI 470 + ++A++ AL+AQ++PHF FNA+N I L+ D KARE+L L+ R +L+ + + Sbjct: 157 MAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQV 216 Query: 471 PLEKELEHVKAYLAIEQARFPGWYHVHFDIDPLLHTAMVPPFTLQPLVENAVHHAFTQQF 530 L EL V +YL + +F I+P + VPP +Q LVEN + H Q Sbjct: 217 SLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLP 276 Query: 531 TKNPFIVVRARVKNGKFIMETEDNGKGISKEQVQSLGNVAVDSAEGTGTALWNIRKRIEE 590 I+++ NG +E E+ G K + E TGT L N+R+R++ Sbjct: 277 QGG-KILLKGTKDNGTVTLEVENTGSLALKN-----------TKESTGTGLQNVRERLQM 324 Query: 591 IYGHSAVFRIENRKTGGTKVAISIP 615 +YG A ++ ++ G + IP Sbjct: 325 LYGTEAQIKLSEKQ-GKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.8 bits (163), Expect = 5e-15 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 8/133 (6%) Query: 3 KAFVVDDEAPARDELIYLLKKTG-QVELAGEAGSVKEALAKLKETEADIVFADMMLTNEH 61 V DD+A R L L + G V + + + + D+V D+++ +E+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITS---NAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GIDLVKEI-SRYPQHPAVVFATAYD--EYAVKAFELNAADYILKPFEEKRVAQTVAKVKK 118 DL+ I P P V+ +A + A+KA E A DY+ KPF+ + + + Sbjct: 62 AFDLLPRIKKARPDLP-VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 119 MLEGDRPAVPKNP 131 + + + Sbjct: 121 EPKRRPSKLEDDS 133
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 27.4 bits (60), Expect = 0.001 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 3/37 (8%) Query: 2 YNLANLLSARKNIRKKRRDTIFRGLSAFNVYSPLLQS 38 YN AN + +++ KKR+ +IFRG+ A+N +L+S Sbjct: 705 YNSANHIFSQE---KKRKISIFRGIQAYNEIENVLKS 738
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.4 bits (81), Expect = 1e-04 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 17 VIEGKSGAGKSTLLNILGGMEKPTSGKV-YYKGKSFYD 53 V+EG G GKSTL+N L G++ + GK Y+ Sbjct: 600 VLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYE 637
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.7 bits (90), Expect = 2e-05 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 11/57 (19%) Query: 134 DVVAAMGGTVTKVQEDAVLGNVIEVEHDKGVTTEYQSVKDIAVKEGDTVKQGQTIAK 190 ++VA G +T G E++ + VK+I VKEG++V++G + K Sbjct: 81 EIVATANGKLT------HSGRSKEIKPIENSI-----VKEIIVKEGESVRKGDVLLK 126
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 476 bits (1227), Expect = e-172 Identities = 179/333 (53%), Positives = 246/333 (73%), Gaps = 5/333 (1%) Query: 1 MFAKDIGIDLGTANVLIHVKGQGIVLNEPSVVAIEKTA----NKVLAVGEEARRMVGRTP 56 MF+ D+ IDLGTAN LI+VKGQGIVLNEPSVVAI + V AVG +A++M+GRTP Sbjct: 8 MFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLGRTP 67 Query: 57 GNIVAIRPLKDGVIADFDVTETMLRYFINKLNVKGFLS-KPRILICCPTNITSVEQKAIR 115 GNI AIRP+KDGVIADF VTE ML++FI +++ F+ PR+L+C P T VE++AIR Sbjct: 68 GNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIR 127 Query: 116 EAAEKSGGKNVYLEEEPKVAAIGAGMDIFQPSGNMVVDIGGGTTDIAVLSMGDIVTSSSI 175 E+A+ +G + V+L EEP AAIGAG+ + + +G+MVVDIGGGTT++AV+S+ +V SSS+ Sbjct: 128 ESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSV 187 Query: 176 KMAGDKFDNEILQYIKREYKLLIGERTAENIKMNIGTVFPGARNEEMDIRGRDMVSGLPR 235 ++ GD+FD I+ Y++R Y LIGE TAE IK IG+ +PG E+++RGR++ G+PR Sbjct: 188 RIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPR 247 Query: 236 TITIKSAEIEKALRESVSIIVHATKNVLEKTPPELSADIIDRGVILTGGGALLHGIDQLL 295 T+ S EI +AL+E ++ IV A LE+ PPEL++DI +RG++LTGGGALL +D+LL Sbjct: 248 GFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL 307 Query: 296 AEEIKVPVLVAENPMSSVAIGTGVMLENIDKIS 328 EE +PV+VAE+P++ VA G G LE ID Sbjct: 308 MEETGIPVVVAEDPLTCVARGGGKALEMIDMHG 340
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 36.9 bits (85), Expect = 6e-05 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 4 GLYTAASGMIAQQRKTDLLANNLSNADTPGYKTDQSLIRSFPKMLLSYMDKNGTTGEVV 62 + A SG+ A Q + +NN+S+ + GY T Q+ I S + G G V Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGY-TRQTTIM---AQANSTLGAGGWVGNGV 57 Score = 31.1 bits (70), Expect = 0.005 Identities = 10/47 (21%), Positives = 20/47 (42%) Query: 211 QIKQGFLESSNVDETKTMTDMMSAYRSFEANQKVLQAYDASLGKAVN 257 Q+ S V+ + ++ + + AN +VLQ +A +N Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.008 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 208 NVNAANVYTDLTGATRSQISMQQGVLEKSNVDLSTEITELTKTERLYQFQSKTITLSDQM 267 + G +Q+S QQ S V+L E L + ++ Y ++ + ++ + Sbjct: 481 KTATLKTSSATQGNVVTQLSNQQ--QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAI 538 Query: 268 MGLVNNIR 275 + NIR Sbjct: 539 FDALINIR 546 Score = 28.8 bits (64), Expect = 0.025 Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 4 SMLTATNTLRQLQDKIDTISHNVANVDTNGYK 35 + A + L Q ++T S+N+++ + GY Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYT 34
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 55.7 bits (134), Expect = 6e-11 Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 7/168 (4%) Query: 209 RENRTYFRLLSSPVSAGKYVLSNVL---CNLIVMAVQIALITAAMKYVFHMTMNLSIWQL 265 RT+ +L + + G VL + + I ++ AA+ Y T LS+ Sbjct: 95 EGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGY----TQWLSLLYA 150 Query: 266 SAVMFLFAWISTGISLMMVSLSNSRSAFNSLQSLIAVPTCMLSGCFWPVEIMPKALQKVS 325 V+ L + +++ +L+ S F Q+L+ P LSG +PV+ +P Q + Sbjct: 151 LPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAA 210 Query: 326 DFLPQRWTLETLDKLQTGHPLSSLYLNILILIAFALCFFLFAIYQLSR 373 FLP +++ + + GHP+ + ++ L + + F + L R Sbjct: 211 RFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRR 258
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 33.4 bits (76), Expect = 0.001 Identities = 39/189 (20%), Positives = 75/189 (39%), Gaps = 9/189 (4%) Query: 182 AIVITTMICLYASLGSSAFMQVERTRKTADRLIAAPVRKSSIFIGKLFADVLIYTACIAL 241 A+ T +YA+ G M+ +RT + ++ +R I +G++ A Sbjct: 78 AMTAATFETIYAAFGR---MEGQRTWEA---MLYTQLRLGDIVLGEMAWAATKAALAGAG 131 Query: 242 IIIVSKVVYKANWGNHLPLVFLVLLTEIILSVSIGIGVSIFSKSAATGAIL-NLFIQLSA 300 I +V+ + W + L + ++ LT + + S+G+ V+ + S L I Sbjct: 132 IGVVAAALGYTQWLSLLYALPVIALTGLAFA-SLGMVVTALAPSYDYFIFYQTLVITPIL 190 Query: 301 FFGGAYFKIEN-PGKLQAVMDLSPLTWINQAITKIIYNNVLSAATPVAAANLGIALLILF 359 F GA F ++ P Q PL+ I I+ + + A ++ F Sbjct: 191 FLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFF 250 Query: 360 ISVTALQKR 368 +S L++R Sbjct: 251 LSTALLRRR 259
>PF06580#Sensor histidine kinase Length = 349 Score = 31.4 bits (71), Expect = 0.005 Identities = 31/190 (16%), Positives = 66/190 (34%), Gaps = 44/190 (23%) Query: 199 MEAAKSLLEKDPTRARALLQNAITITKEGIESIRLTLKQMKPPVEQVG--IHRLQLALDT 256 + ++L+ +DPT+AR +L + + +R +L+ + + + L Sbjct: 179 LNNIRALILEDPTKAREMLTSLSEL-------MRYSLRYSNARQVSLADELTVVDSYLQL 231 Query: 257 FSARYELETMLTYSGNLDCITHVQWKIIHENVKEALT----------NARKYA-----DA 301 S ++E L + ++ + + N K+ Sbjct: 232 ASIQFE--DRLQFENQIN-----------PAIMDVQVPPMLVQTLVENGIKHGIAQLPQG 278 Query: 302 SQITVNIQVLNKIIKAEVKDNGKGAAKVKK---GLGITGMEERAATLRGH----VITDGS 354 +I + N + EV++ G A K K G G+ + ER L G +++ Sbjct: 279 GKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQ 338 Query: 355 HGFSVTTLLP 364 + L+P Sbjct: 339 GKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.6 bits (199), Expect = 3e-19 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 3/118 (2%) Query: 80 MEKIKIVIADDNSFIREGLKIILSSYEEFEVMATVGNGKEAAAYCRNQSVDIALLDVRMP 139 M I++ADD++ IR L LS ++V N + D+ + DV MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSR-AGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 140 EMNGVEAAKIIAAQTSAKP-MILTTFDDDEYIVDALRNGARGYLLKNNDPEKIRDAIK 196 + N + I P ++++ + + A GA YL K D ++ I Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 63.3 bits (154), Expect = 4e-13 Identities = 68/387 (17%), Positives = 140/387 (36%), Gaps = 18/387 (4%) Query: 15 NLALFAGGFNTFAILWGM---QPLLPDIAEQFHLSPTMSS---LSLSSTTVTLSVSMLIA 68 N L G+ P+LP + S +++ + L+ + + Sbjct: 4 NRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVL 63 Query: 69 GSLSEVFGRKSVMSFSLIASSALCILTAFAPTYHLLILCRVLQGLVLAGLPAVAMAYLGE 128 G+LS+ FGR+ V+ SL ++ + A AP +L + R++ G+ A AVA AY+ + Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIAD 122 Query: 129 EILPSSLGLAMGLYISGNSIGGMAGRIICGTLTDFFNWHVALASIGVISLLASILFWVVL 188 G + G +AG ++ G + F+ H + ++ L + +L Sbjct: 123 ITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 189 PPSSHFT---ARKLEIGKLTGSLVRQLVEPGLIYLFLIGFLLMGSFVSLYNYIGFQLIAP 245 P S R+ + L + + + + F +M + + Sbjct: 182 PESHKGERRPLRREALNPLASFRWARGMTV--VAALMAVFFIMQLVGQVPAALWVIFGED 239 Query: 246 PYSLSQTVVGFIFIVY-LVGTFSSAW-MGMLADRHGRRKILQLSLLIVLLG-ASITLVPS 302 + T +G + ++ + + A G +A R G R+ L L ++ G + Sbjct: 240 RFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATR 299 Query: 303 LWLKIFGIAVFTFGFFAGHSIASGWVGRLSSHDKAQASGLYLFFYYIGSSIGGTIGGVFY 362 W+ + + G ++ + ++ + Q G + S +G + Y Sbjct: 300 GWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIY 359 Query: 363 --SRVGWNGVVLMIAVLTVLAIVFSIR 387 S WNG + L + ++R Sbjct: 360 AASITTWNGWAWIAGAALYLLCLPALR 386
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.010 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Query: 35 LIGPSGAGKTTLVKMMVGME-KTDAGTVHVLGEKMPDLEVLQ 75 L G G GK+TL+ +VG++ +D T +G E + Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSD--THFDIGTGKDSYEQIA 640
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 53.8 bits (129), Expect = 2e-10 Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 3/166 (1%) Query: 239 RTSGTLDRLMATPVKRGEIVAAYLVGFGIFAVIQTVIVVFYAVNVLDMVLAGSLWNVLLV 298 T + ++ T ++ G+IV + A + + A L SL L V Sbjct: 95 EGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAA-ALGYTQWLSLLYALPV 153 Query: 299 NLMLALVALSLGILLSSFAASEFQMVQFIPLVVVPQIFFSG-IIPLKGMAVWLQALAKVM 357 + L SLG+++++ A S + + LV+ P +F SG + P+ + + Q A+ + Sbjct: 154 IALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAARFL 213 Query: 358 PIYYGADALKRVMYEGMGLGDVWKDLTALVVFAVIFILLNIIALRR 403 P+ + D ++ +M DV + + AL ++ VI L+ LRR Sbjct: 214 PLSHSIDLIRPIMLGHPV-VDVCQHVGALCIYIVIPFFLSTALLRR 258
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 80.4 bits (198), Expect = 8e-21 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 7/176 (3%) Query: 15 KTDVKLTDKKQKIMEAAISLFAEKGYGNTPTSEIAKAAGVAEGTIFRHFGTKDHLLVSLI 74 KT + + +Q I++ A+ LF+++G +T EIAKAAGV G I+ HF K L + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 75 VPFLKDSIPLMAEELFEKLLSNHELRFEDFLRNLLRDRLLFLKQNKEIFQIIVK---EFF 131 + L E K + + L ++L ++ + + I+ EF Sbjct: 64 ELSESNIGEL-ELEYQAKFPGDPLSVLREILIHVL--ESTVTEERRRLLMEIIFHKCEFV 120 Query: 132 YNEEIRHELIPYFAENIGSRLVQVIRTFQERGEL-SDQPAETMARHIFFSIGGTFI 186 + + R+ Q ++ E L +D A + I G Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 377 bits (970), Expect = e-129 Identities = 132/379 (34%), Positives = 194/379 (51%), Gaps = 35/379 (9%) Query: 103 FYYKEKLMGAVEIAEDITKIERLIRRNHEPH--TGYTFHHIIGKSKAVSEVIEFAKRAAR 160 + Y K E+ I + +R ++G+S A+ E+ R + Sbjct: 99 YDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQ 158 Query: 161 TSSYVLIIGETGTGKELFAQSIHYESERSRGPFITQNCAALPDNLIESILFGTKKGAFTG 220 T ++I GE+GTGKEL A+++H +R GPF+ N AA+P +LIES LFG +KGAFTG Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTG 218 Query: 221 AV-DRAGLFEQADGGTLLLDEINALNIHLQAKLLRVLQEKKVKRIGGTQEKPVDVRVIAT 279 A G FEQA+GGTL LDEI + + Q +LLRVLQ+ + +GG DVR++A Sbjct: 219 AQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAA 278 Query: 280 MNETPYEAIANHRLRKDLYYRLGVVTLLIPPLRDRLEDLPLLTRHFIQKYNTLFQMNVRG 339 N+ ++I R+DLYYRL VV L +PPLRDR ED+P L RHF+Q+ ++V+ Sbjct: 279 TNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKR 337 Query: 340 ITPEVLTFFHSYRWPGNIRELEHIIEAAMNVMLDEDMIELRHLPMQYRQSGHYTPAAEK- 398 E L ++ WPGN+RELE+++ + +D+I + + R +P + Sbjct: 338 FDQEALELMKAHPWPGNVRELENLVRRLT-ALYPQDVITREIIENELRSEIPDSPIEKAA 396 Query: 399 -----------------------------SPLLKDRLFEYEKQCILEALEANGSNISKAA 429 S L L E E IL AL A N KAA Sbjct: 397 ARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAA 456 Query: 430 EQLGLSRQSLQYRMKRLGI 448 + LGL+R +L+ +++ LG+ Sbjct: 457 DLLGLNRNTLRKKIRELGV 475
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.8 bits (67), Expect = 0.007 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 16/91 (17%) Query: 45 ATGFVVEFGPGTGNLTGKLLEKGLKIIGI-------EPSANMRKIAQKKHPDVKIIDGDF 97 A GF+ +++ +LLE G +++GI + S ++ P + D Sbjct: 8 AAGFI------GFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 98 LNFHVQEKADTFASTYAFHHLTDEEKRAAIS 128 + +E ++ F + R A+ Sbjct: 62 AD---REGMTDLFASGHFERVFISPHRLAVR 89
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 197 bits (502), Expect = 8e-68 Identities = 63/144 (43%), Positives = 93/144 (64%), Gaps = 7/144 (4%) Query: 9 VESFNLDHTKVKAPYVRLAGVKEGIHGDVIRKYDIRFCQPNKEHMDMPGLHSLEHMMAEF 68 ++SF +DHT++ AP VR+A + GD I +D+RF PNK+ + G+H+LEH+ A F Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 69 ARNYTD----KIVDISPMGCQTGFYFSVINLDDDGEVLDIIEKTLNDVL---HATEVPAC 121 RN+ + +I+DISPMGC+TGFY S+I + +V D + DVL + ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 122 NETQCGWAASHSLEGAKEIARKML 145 NE QCG AA HSL+ AK+IA+ +L Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNIL 146
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.0 bits (78), Expect = 0.001 Identities = 19/142 (13%), Positives = 50/142 (35%), Gaps = 8/142 (5%) Query: 219 AEKETRIRKAEALKEAKRAELERATEIAEAEKFNQLKIAEFRREQDIARAKADQAYDLET 278 +KE + K A + A + R ++ EK + +Q IA+ + E Sbjct: 203 YQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKH---AVLEQEN 259 Query: 279 ARSKQDVTAQEMEIKIIERQKQIELEEKEILRRERQYDSEVKKKADADRYSVEQAAVAEK 338 + + + ++ + + +I ++E + + +E+ D+ + Sbjct: 260 KYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI-----LDKLRQTTDNIGLL 314 Query: 339 TKQMAEADAHKYRVEAMAKAEG 360 T ++A+ + + A Sbjct: 315 TLELAKNEERQQASVIRAPVSV 336
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 433 bits (1114), Expect = e-155 Identities = 168/332 (50%), Positives = 229/332 (68%), Gaps = 6/332 (1%) Query: 1 MFSGNEIGIDLGTANVLVYSKKEGVILDEPSVVAID----HSTRQVLAFGQEAKAMIGKT 56 MFS N++ IDLGTAN L+Y K +G++L+EPSVVAI S + V A G +AK M+G+T Sbjct: 8 MFS-NDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLGRT 66 Query: 57 PEKITVIRPLKGGVIADFDMTTEMLKQIMKKINQQSGISIRKPNVVVCVPSGATSVERRA 116 P I IRP+K GVIADF +T +ML+ +K+++ S + P V+VCVP GAT VERRA Sbjct: 67 PGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMR-PSPRVLVCVPVGATQVERRA 125 Query: 117 IEDVVKNSGAKTVHLIEEPVAAAIGADLPVDEPIANVIVDIGGGTTEVAIISFGGVVTYN 176 I + + +GA+ V LIEEP+AAAIGA LPV E +++VDIGGGTTEVA+IS GVV + Sbjct: 126 IRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSS 185 Query: 177 TIRIGGDKMDDDIMQHVRKTYNLLIGERTAEKIKMEIGHALVDHPEQTMDIRGRDLVAGL 236 ++RIGGD+ D+ I+ +VR+ Y LIGE TAE+IK EIG A + +++RGR+L G+ Sbjct: 186 SVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGV 245 Query: 237 PRTITLSSLEIQASLRDSLLQILETVRATLEDCPAELSGDIVDRGIVLTGGGALLQGMQE 296 PR TL+S EI +L++ L I+ V LE CP EL+ DI +RG+VLTGGGALL+ + Sbjct: 246 PRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDR 305 Query: 297 WLSNEISVPVHLAPNPLQSVVVGAGRSLQFIH 328 L E +PV +A +PL V G G++L+ I Sbjct: 306 LLMEETGIPVVVAEDPLTCVARGGGKALEMID 337
>SECA#SecA protein signature. Length = 901 Score = 29.5 bits (66), Expect = 0.042 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 11/66 (16%) Query: 285 IRQLDFNKLNLKRF-TQLIHRPNGIILITG-----PTGSGKS--STLYAALNHLNDEQVN 336 +R+ ++ F QL+ G++L TG GK+ +TL A LN L + V+ Sbjct: 71 VREASKRVFGMRHFDVQLL---GGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVH 127 Query: 337 IITVED 342 ++TV D Sbjct: 128 VVTVND 133
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 304 bits (780), Expect = e-103 Identities = 123/405 (30%), Positives = 212/405 (52%), Gaps = 8/405 (1%) Query: 1 MPRFKYEGRTKAGKK-NGVVTAESKREALVKLRGQGVRVLQINEM-----PETLMTMEIS 54 M ++ Y+ GKK G A+S R+A LR +G+ L ++E + + Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 55 LGGRVKLQDFVIFLRQFSTLLKAGVTVVDSTNILASQTSSKTLKKTLLAVEEDLRGGIPL 114 R+ D + RQ +TL+ A + + ++ + +A Q+ L + + AV + G L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 115 SQAAAKHKKVFTPMFINMVYAGEAGGNLDGTLERLATYYEKQHRTRQKVRSALTYPAFVG 174 + A F ++ MV AGE G+LD L RLA Y E++ + R +++ A+ YP + Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 175 VMAIVVVIFMLVKIVPTFVSMLKNYKASLPAVTRLVLSASGFMQHYW-WLVVLILIGVYV 233 V+AI VV +L +VP V + K +LP TR+++ S ++ + W+++ +L G Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 234 LLVVLRKNKTSKFYLDYAMLKFPIFGKLVQKSIIARMTRTLSSLFSSSVPILQALSIVEA 293 V+LR+ K + +L P+ G++ + AR RTLS L +S+VP+LQA+ I Sbjct: 241 FRVMLRQEK-RRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGD 299 Query: 294 IVENEVMTKVLRQARDALEKGQSMTEPMRRHWVFPPLVTQMIAIGEETGALDAMLGKVAD 353 ++ N+ L A DA+ +G S+ + + + +FPP++ MIA GE +G LD+ML + AD Sbjct: 300 VMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAAD 359 Query: 354 FYEAEVEAATDQIKALIEPFMIVVLAAVVGTIIAAIMIPMFEIYN 398 + E + L EP ++V +AAVV I+ AI+ P+ ++ Sbjct: 360 NQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNT 404
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 41.0 bits (96), Expect = 2e-07 Identities = 18/58 (31%), Positives = 34/58 (58%) Query: 7 KLLKNQKGFTLIELLAVIVILAIIAAIAIPAIGHIIKNSHIDGDKSDAVQVINAAKLY 64 + Q+GFTL+E++ VIVI+ ++A++ +P + + + SD V + NA +Y Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMY 59
>PF06580#Sensor histidine kinase Length = 349 Score = 40.6 bits (95), Expect = 1e-05 Identities = 25/136 (18%), Positives = 40/136 (29%), Gaps = 53/136 (38%) Query: 417 LIRNSCDHGIEQSEERKRAGKPETGTITLKAYHSGNHVFIEIEDDGAGINREKVLEKAIE 476 L+ N HGI Q P+ G I LK V +E+E+ G+ + Sbjct: 263 LVENGIKHGIAQ--------LPQGGKILLKGTKDNGTVTLEVENTGSLALKN-------- 306 Query: 477 KGIVKKEEAGSLTDSQIYNLIFESGFSTADHVSDISGRGVGLDVVKSTIQSLGG---SIS 533 G GL V+ +Q L G I Sbjct: 307 ---------------------------------TKESTGTGLQNVRERLQMLYGTEAQIK 333 Query: 534 VHSAEGRGSVFTIQLP 549 + +G+ + + +P Sbjct: 334 LSEKQGKVNA-MVLIP 348
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 376 bits (966), Expect = e-132 Identities = 122/346 (35%), Positives = 197/346 (56%), Gaps = 2/346 (0%) Query: 12 AGEKTEKATPKKRRDARKKGQTAKSQDIVTAVMLLAVFLFLYFGASSIGSPMMALFRQAF 71 +GEKTE+ TPKK RDARKKGQ AKS+++V+ +++A+ L + L Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPA 61 Query: 72 SKYMLQDVTEQSVGKLMTGVMKQLASMLLPVMAVALLAGVVGNVAQTGLLFTGEGLKPNI 131 + L Q++ ++ V+ + + P++ VA L + +V Q G L +GE +KP+I Sbjct: 62 EQSYLPF--SQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDI 119 Query: 132 NKINPVAGLKRIFSIRALVELLKSVLKMAVVGVVAFYVIWANIQDISGLPFKSAGDTLAA 191 KINP+ G KRIFSI++LVE LKS+LK+ ++ ++ + +I N+ + LP Sbjct: 120 KKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPL 179 Query: 192 VGHLAAITGISASVALFVLAVLDYLYQRFDFEKNIRMSKQEIKEEFKNMEGDPLIKSKIR 251 +G + + +V V+++ DY ++ + + K ++MSK EIK E+K MEG P IKSK R Sbjct: 180 LGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRR 239 Query: 252 QKQREMAMRRMMQEVPNADVVITNPTHFAVCLRYDETKSDAPIVVAKGADFLAQKIKSIA 311 Q +E+ R M + V + VV+ NPTH A+ + Y ++ P+V K D Q ++ IA Sbjct: 240 QFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIA 299 Query: 312 KEHDIVMLENRPLARALYEQVEVGGRIPEQFFKAVAEILAYVYKIK 357 +E + +L+ PLARALY V IP + +A AE+L ++ + Sbjct: 300 EEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 152 bits (387), Expect = 1e-47 Identities = 71/255 (27%), Positives = 131/255 (51%), Gaps = 4/255 (1%) Query: 2 DELIPSFSIFLLVFIRVTTFFIMMPLFSHRSVPARFRIGLGFFLSVLVTYTIHAKPFTMD 61 ++ + +++ +RV P+ S RSVP R ++GL ++ + ++ A + Sbjct: 7 EQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVF 66 Query: 62 GAYFM-LMIKEALVGLLLGFVAYFILSAVQLAGTFIDFQAGFSMANVIDPQSGAQTPLTG 120 + + L +++ L+G+ LGF F +AV+ AG I Q G S A +DP S P+ Sbjct: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 Query: 121 EYLYSFALLLLLSLNGHHLLLDGIYYSYSFIPLDQAWVHLGSFNLAKYLATLLARVFLVA 180 + ALLL L+ NGH L+ + ++ +P+ ++ +F L + +FL Sbjct: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAF---LALTKAGSLIFLNG 183 Query: 181 FQMSAPVVAVLFLTDIALGIIARTVPQLNIFVVGFPVKIAVSLIALAVAMGTIYIAVEHL 240 ++ P++ +L ++ALG++ R PQL+IFV+GFP+ + V + +A M I EHL Sbjct: 184 LMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHL 243 Query: 241 FEWMFVAMRNCMALL 255 F +F + + ++ L Sbjct: 244 FSEIFNLLADIISEL 258
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 65.2 bits (159), Expect = 8e-18 Identities = 24/78 (30%), Positives = 47/78 (60%) Query: 4 EMVISLAEKGIMVTFMVCGPLLLIALVVGMIVSIFQAATQIQEQTLAFVPKIVAVLLGLV 63 + ++ K + + ++ G ++A ++G++V +FQ TQ+QEQTL F K++ V L L Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 LLGPWMLSHMLTYTKEIL 81 LL W +L+Y ++++ Sbjct: 62 LLSGWYGEVLLSYGRQVI 79
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 264 bits (675), Expect = 6e-92 Identities = 111/218 (50%), Positives = 160/218 (73%) Query: 4 LLNTLSSTSGDTVSLSVKILLLMTVLSLAPSILILLTSFTRIVIVLSFVRTSLGTQTAPP 63 + + G + SL V+ L+ +T L+ P+IL+++TSFTRI+IV +R +LGT +APP Sbjct: 26 ITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPP 85 Query: 64 NQVIVGLALFLTFFIMAPTFQQVNKQALTPLFHDKLTLEEAYDKAQKPFKEFMAKETRQK 123 NQV++GLALFLTFFIM+P ++ A P +K++++EA +K +P +EFM ++TR+ Sbjct: 86 NQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREA 145 Query: 124 DLQLFLDYAHKKQPKSVQDIPMTTLVPAFTISELKTAFQMGFMIFIPFLVIDMVVASVLM 183 DL LF A+ + + +PM L+PA+ SELKTAFQ+GF IFIPFL+ID+V+ASVLM Sbjct: 146 DLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLM 205 Query: 184 SMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLESF 221 ++GMMM+PP I+LPFK++LFVLVDGW L+V SL +SF Sbjct: 206 ALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 26.8 bits (59), Expect = 0.038 Identities = 8/38 (21%), Positives = 15/38 (39%) Query: 110 NVDLLTEMTGMISATRSYEANVTALNASKAMLMKTLEL 147 V+L E + + Y AN L + A+ + + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 58.9 bits (142), Expect = 8e-11 Identities = 58/360 (16%), Positives = 125/360 (34%), Gaps = 10/360 (2%) Query: 145 KVEEILNSKAEERRSIFEEAAGVLKYKTRKKKAEVKLAETQDNLNRVSDILYELESQLEP 204 S+ + + E A K L+ L +D L E S + Sbjct: 40 VSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKE 99 Query: 205 LKMQASVAKDYLEQKEALKNYEIAVLAYEIESLHGEWESLKSQLEAHRDKEAGLSSEIRK 264 + + K A L +E + ++++ ++A L++ Sbjct: 100 KLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKAD 159 Query: 265 QEAQLEEKRNQLDALDESIQDLQNVLLQATEELEKLEGQKEVLKERKKNASENKAQLEKN 324 E LE N A I+ L+ +LE E S LE Sbjct: 160 LEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE 219 Query: 325 INEAENALKELEAQKEKLLQTAAENEQALSSLKESVKEKEA----------GLFRLSTNL 374 +LE E + + + + +L+ EA G ST Sbjct: 220 KAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTAD 279 Query: 375 EGKIESLKSDYIELLNEQASGKNEKRLLMQQLQTSLNRLSRLEAENRKYVEEREKVREKK 434 KI++L+++ L E+A +++ ++L Q+ L ++ E +K+ E+ Sbjct: 280 SAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQN 339 Query: 435 KMATGRLAKIKQELEAAAGAYMEKQRQLESVNSRYQKQESNLYQAYQYLQKAKSRKETLE 494 K++ ++++L+A+ A + + + + + + + E++ + L ++ K+ +E Sbjct: 340 KISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVE 399 Score = 55.8 bits (134), Expect = 8e-10 Identities = 57/354 (16%), Positives = 119/354 (33%), Gaps = 22/354 (6%) Query: 176 KAEVKLAETQDNLNRVSDILYELESQLEPLKMQASVAKDYLEQKEALKNYEIAVLAYEIE 235 + V D L +V + + E + LK++ D +ALK++ + Sbjct: 40 VSAVATRSQTDTLEKVQERADKFEIENNTLKLKN---SDLSFNNKALKDH--------ND 88 Query: 236 SLHGEWESLKSQLEAHRDKEAGLSSEIRKQEAQLEEKRNQLDALDESIQDLQNVLLQATE 295 L E + K +L + + +S+I++ EA+ + L+ + Sbjct: 89 ELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEA 148 Query: 296 ELEKLEGQKEVLKERKKNASENKAQLEKNINEAENALKELEAQKEKLLQTAAENEQALSS 355 E L +K L++ + A I E LEA++ +L + ++ Sbjct: 149 EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTA 208 Query: 356 LKESVKEKEAGLFRLSTNLEGKIESLKSDYIELLNEQASGKNEKRLLMQQLQTSLNRLSR 415 +K EA L+ +E + ++ L+ R + Sbjct: 209 DSAKIKTLEAEKAALAARKA-DLEKALEGAMNFSTADSAKIKTLEAEKAALE---ARQAE 264 Query: 416 LEAENRKYVEEREKVREKKKMATGRLAKIKQELEAAAGAYMEKQRQLESVNSRYQKQESN 475 LE + K K A ++ E + Q + +N+ Q + Sbjct: 265 LEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADL-------EHQSQVLNANRQSLRRD 317 Query: 476 LYQAYQYLQKAKSRKETLEEMEEDYTGFYQGVRAILKARGKQLEGIEGAVAELV 529 L + + ++ ++ + LEE + Q +R L A + + +E +L Sbjct: 318 LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLE 371 Score = 52.0 bits (124), Expect = 1e-08 Identities = 58/293 (19%), Positives = 111/293 (37%), Gaps = 6/293 (2%) Query: 145 KVEEILNSKAEERRSIFEEAAGVLKYKTRKKKAEVKLAETQDNLNRVSDILYELESQLEP 204 + + E+ ++ A + K + L L ++ LE Sbjct: 173 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEK 232 Query: 205 LKMQASVAKDYLEQKEALKNYEIAVLAYEIESLHGEWESLKSQLEAHRDKEAGLSSEIRK 264 A K E A L L E + A K L +E Sbjct: 233 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 292 Query: 265 QEAQLEEKRNQLDALDESIQDLQNVLLQATEELEKLEGQKEVLKERKKNASENKAQLEKN 324 EA+ + +Q L+ + Q L+ L + E ++LE + + L+E+ K + ++ L ++ Sbjct: 293 LEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD 352 Query: 325 INEAENALKELEAQKEKL---LQTAAENEQALSSLKESVKEKEAGLFRLSTNLEGKIESL 381 ++ + A K+LEA+ +KL + + + Q+L ++ +E + + + K+ +L Sbjct: 353 LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAAL 412 Query: 382 KSDYIELLNEQASGKNEKRLLMQQLQTSLNRLSRLEAENRKYVEEREKVREKK 434 + EL + + EK L +L+ L A K EE K+R K Sbjct: 413 EKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLA---KQAEELAKLRAGK 462 Score = 49.7 bits (118), Expect = 5e-08 Identities = 47/298 (15%), Positives = 90/298 (30%), Gaps = 10/298 (3%) Query: 678 SELEALKEKLAGMEKTTMALETEVKALKAEASRMQQELDEARKNGEALRLGEQQAKAELE 737 LE ++E+ E L+ + L ++ DE + + ++ L Sbjct: 50 DTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLS 109 Query: 738 RLAVEEKNLDEHLLVYDMEKQEAEKQQDEARKRIGELEDMLARTGEKAQQLEAEIEALTV 797 A + + L+ + + A +I LE A + LE +E Sbjct: 110 EKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 169 Query: 798 KKNDDSTAKSRLQGELSDLKSTLAVKMEQAARDREELARLDREIKEWASRKARYDEQYHF 857 DS L+ E + L+ + A + L +++ + + Sbjct: 170 FSTADSAKIKTLEAEKAALE-------ARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 222 Query: 858 LTDESKKHHMSESELAEAAEQKARDKNDTLAFIAVRREERARLTAEMEDLERGLKEWKRQ 917 L + + + A A +A L +E + Sbjct: 223 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 282 Query: 918 QKGLQQAIQDEEVKANRLDVE---LENRLQRLREEYTLTFEAAKEARPLNVSLEEARK 972 K L+ E + L+ + L Q LR + + EA K+ + LEE K Sbjct: 283 IKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Score = 46.6 bits (110), Expect = 5e-07 Identities = 55/251 (21%), Positives = 103/251 (41%), Gaps = 10/251 (3%) Query: 135 KEAFSIISQGKVEEILNSKAEERRSIFEEAAGVLKYKTRKKKAEVKLAETQDNLNRVSDI 194 FS K++ + KA + + K+ + + Sbjct: 202 AMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEAR 261 Query: 195 LYELESQLEPLKMQASVAKDYLEQKEALKNY---EIAVLAYEIESLHGEWESLKSQLEAH 251 ELE LE ++ ++ EA K E A L ++ + L+ +SL+ L+A Sbjct: 262 QAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDAS 321 Query: 252 RDKEAGLSSEIRKQEAQLEEKRNQLDALDESIQDLQNVLLQATEELEKLEGQKEVLKERK 311 R+ + L +E +K E Q + S Q L+ L + E ++LE + + L+E+ Sbjct: 322 REAKKQLEAEHQKLE-------EQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQN 374 Query: 312 KNASENKAQLEKNINEAENALKELEAQKEKLLQTAAENEQALSSLKESVKEKEAGLFRLS 371 K + ++ L ++++ + A K++E E+ A E+ L+ES K E L Sbjct: 375 KISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQ 434 Query: 372 TNLEGKIESLK 382 LE + ++LK Sbjct: 435 AKLEAEAKALK 445 Score = 44.7 bits (105), Expect = 2e-06 Identities = 50/287 (17%), Positives = 97/287 (33%), Gaps = 14/287 (4%) Query: 677 KSELEALKEKLAGMEKTTMALETEVKALKAEASRMQQELDEARKNGEALRLGEQQAKAEL 736 + LE LE E AL+A + +++ L+ A A + +AE Sbjct: 161 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 220 Query: 737 ERLAVEEKNLDEHLLVYDMEKQEAEKQQDEARKRIGELEDMLARTGEKAQQLEAEIEALT 796 LA + +L++ L + LE A + + A + Sbjct: 221 AALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADS 280 Query: 797 VKKNDDSTAKSRLQGELSDLKSTLAVKMEQAARDREELARLDREIKEWASRKARYDEQY- 855 K K+ L+ E +DL+ V R +L K+ + + +EQ Sbjct: 281 AKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Query: 856 ---HFLTDESKKHHMS-------ESELAEAAEQKA---RDKNDTLAFIAVRREERARLTA 902 + S E+E + EQ + + RE + ++ Sbjct: 341 ISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEK 400 Query: 903 EMEDLERGLKEWKRQQKGLQQAIQDEEVKANRLDVELENRLQRLREE 949 +E+ L ++ K L+++ + E + L +LE + L+E+ Sbjct: 401 ALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEK 447 Score = 41.6 bits (97), Expect = 2e-05 Identities = 63/311 (20%), Positives = 121/311 (38%), Gaps = 18/311 (5%) Query: 143 QGKVEEILNSKAEERRSIFEEAAGVLKYKTRKKKAEVKLAETQDNLNRVSDILYELESQL 202 + +E +N + I A RK E L + S + LE++ Sbjct: 126 EKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEK 185 Query: 203 EPLKMQASVAKDYLEQKEALKNYE---IAVLAYEIESLHGEWESLKSQLEAHRDKEAGLS 259 L+ + + + LE + I L E +L L+ LE + S Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245 Query: 260 SEIRKQEAQLEEKRNQLDALDESIQDLQNVLLQATEELEKLEGQKEVLKERKKNASENKA 319 ++I+ EA+ + L+++++ N + +++ LE +K L+ K + Sbjct: 246 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQ 305 Query: 320 QLEKNINEAENALKELEAQKEKLLQTAAENEQALSSLKESVKEKEAGLFRLSTNLEGKIE 379 L N ++ ++L+A +E Q AE+++ L+E K EA L +L+ E Sbjct: 306 VLNANR---QSLRRDLDASREAKKQLEAEHQK----LEEQNKISEASRQSLRRDLDASRE 358 Query: 380 SLKSDYIELLNEQASGKNEKRLLMQQLQTSLNRLSRLEAENRKYVEEREKVREKKKMATG 439 + K +L E + + + + S L R +R+ ++ EK E+ Sbjct: 359 AKK----QLEAEHQKLEEQN----KISEASRQSLRRDLDASREAKKQVEKALEEANSKLA 410 Query: 440 RLAKIKQELEA 450 L K+ +ELE Sbjct: 411 ALEKLNKELEE 421
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 148 bits (375), Expect = 4e-46 Identities = 86/252 (34%), Positives = 135/252 (53%), Gaps = 11/252 (4%) Query: 3 LKDKVALVTGASRGIGHEIALAFAASGAHVVVNYAGNAEKAEEVVNAVRSYGVESFAIRA 62 ++ K+A +TGA++GIG +A A+ GAH+ N EK E+VV+++++ + A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAA-VDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 63 DVSNESEVQEMFRQVLEKFGKLDILVNNAGITRDNLLMRMKEAEWDAVIDTNLKGVFLCT 122 DV + + + E+ ++ + G +DILVN AG+ R L+ + + EW+A N GVF + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 123 KAAARPMMKQRSGKIINIASVVGISGNPGQANYTAAKAGVIGLTKTAARELASRGITVNA 182 ++ ++ MM +RSG I+ + S A Y ++KA + TK ELA I N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 183 IAPGMIETDMTDKL------TEDIKEGMLGQ----IPLSRFGKPEDVAKTALFLASSSSD 232 ++PG ETDM L E + +G L IPL + KP D+A LFL S + Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 233 YITGQTIHVDGG 244 +IT + VDGG Sbjct: 245 HITMHNLCVDGG 256
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 26.4 bits (58), Expect = 0.048 Identities = 9/28 (32%), Positives = 13/28 (46%) Query: 3 MKKKDRQQSLQETIRQNPFITDEELAEK 30 M K R ++E I N T +EL + Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDI 28
>SECA#SecA protein signature. Length = 901 Score = 33.7 bits (77), Expect = 0.003 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Query: 280 RLLQGDV-----GSGKTVVAAIALYAAVTAGFQGALMVPTEILAEQHAESLCQLLEPHGV 334 L + + G GKT+ A + Y G ++ + LA++ AE+ L E G+ Sbjct: 93 VLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGL 152 Query: 335 QVALLTSTVKGKRRKA 350 V + + ++ Sbjct: 153 TVGINLPGMPAPAKRE 168
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 70.0 bits (171), Expect = 3e-17 Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 10/169 (5%) Query: 2 AKSKREAIIQAAKQLFQVQGYHATGINQIIEESGAPKGSLYYHFPNGKEEIAIAAIDSVK 61 A+ R+ I+ A +LF QG +T + +I + +G +G++Y+HF + K ++ + + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKD-KSDLFSEIWELSE 67 Query: 62 VEVRQELEQLLAGC-DDPIEAMQAQLLH---VAEKIFGDQPDFRIGLLASESASLNENIR 117 + + + A DP+ ++ L+H + I E ++ Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 118 EACKNAYEEWIATDTDYL---IKKGFTKES--ARQTAVLFHTLIEGAMT 161 +A +N E L I+ R+ A++ I G M Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 128 bits (323), Expect = 2e-34 Identities = 86/417 (20%), Positives = 174/417 (41%), Gaps = 14/417 (3%) Query: 23 QSDFKKFPIMLGLLIGGFIGMFSETALNIALTSLMKDLHITASTVQWLTTGYLLVVGVLV 82 QS+ + I++ L I F + +E LN++L + D + ++ W+ T ++L + Sbjct: 7 QSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGT 66 Query: 83 PVSGLMIRWFTTRQLLLSALSAFIIGTLISAVSHTFTFLLI-GRLVQGIATGILIPLIFN 141 V G + ++LLL + G++I V H+F LLI R +QG L+ Sbjct: 67 AVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMV 126 Query: 142 TVMAIFPPHKRGAALGVVGLVIMFAPAIGPTAAGFILGKLTWQWIFWVMLPFLVAALIIS 201 V P RG A G++G ++ +GP G I + W ++ + + ++ + Sbjct: 127 VVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLM 186 Query: 202 AIFCKNVNEVTRPKIDVLSIVLSTVGFGGIVFGFSSAGDAGWGNAKVIAALAIGVAALAI 261 + K V + D+ I+L +V GIVF L + V + I Sbjct: 187 KLLKKEVR--IKGHFDIKGIILMSV---GIVFFMLFTTSYSISF------LIVSVLSFLI 235 Query: 262 FSIRQLRMEKPMLNVRAFQHKMFTIGTLMIMIVFSIIMSSMLLLPMYWQSGKLVAVALTG 321 F ++ P ++ ++ F IG L I+F + + ++P + ++ A G Sbjct: 236 FVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIG 295 Query: 322 -ILLLPGGIVNGIVSAVSGKLYDLYGAKWLVRIGFLICIAAGAMFICVQTTSSFLFVIAA 380 +++ PG + I + G L D G +++ IG ++ + ++ F+ Sbjct: 296 SVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTF-LSVSFLTASFLLETTSWFMTII 354 Query: 381 NLLLMVGAPLVMSPAQTNGLNALPKEMSPDGSAIMNTAQQVSGAIATALSATLLAAG 437 + ++ G + T ++L ++ + G +++N +S A+ LL+ Sbjct: 355 IVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIP 411
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 119 bits (300), Expect = 1e-31 Identities = 89/399 (22%), Positives = 164/399 (41%), Gaps = 7/399 (1%) Query: 7 VMVSIVLAMLVSSIDATIMNTTMPVIAKELGRF-DLYAWAFASYMITSTILSPVAGRLSD 65 +++ + + S ++ ++N ++P IA + + W ++M+T +I + V G+LSD Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 66 LFGRKKVFGSGIVLFFAGSLLCGMSSGMIELIVF-RAIQGIGAGFMVPFPAIIAGDLFSV 124 G K++ GI++ GS++ + L++ R IQG GA ++ Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 125 ENRGKIQALFTGMWGLSAVLAPLLGSFFVTYLTWRWIFFVNLPVCLISFLTLLPYSEHYA 184 ENRGK L + + + P +G Y+ W ++ + + + +I+ L+ + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKEV 193 Query: 185 PKKARVDYIGAALFAVAITLLLLVTVVHRNYWLFAAAGILFLLLFYFYEKRQDSPIVPLS 244 K D G L +V I +L T + F +L L+F + ++ P V Sbjct: 194 RIKGHFDIKGIILMSVGIVFFMLFTTSYS--ISFLIVSVLSFLIFVKHIRKVTDPFVDPG 251 Query: 245 MFKNKTFARMNANSFIGTVALFGASSYVPLFLQKVTGLSLLMSG-VALLGSSIGWMAAAV 303 + KN F I + G S VP ++ V LS G V + ++ + Sbjct: 252 LGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 304 PAGKWILRYGYRRLLLIGNGLLLVSGLCWIFLNPGHGFWYVFLVMIVHGAAFGLLSTVGI 363 G + R G +L IG L VS L FL ++ +++ V G + + Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIST 371 Query: 364 IGSQQMVSAHEKGVATSFFMFCRNMGTAIGVTVMGAFLT 402 I S + E G S F + G+ ++G L+ Sbjct: 372 IVSSSL-KQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 31.3 bits (70), Expect = 4e-04 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 21 ENKVLYEARLKFLRDQLANIRGEREEGLKEGIQKGIEEGRQKGIEEGVQIAIKKMLSKGT 80 + + E L QLA ++ + E +G Q GI EGRQ+G ++G Q + + L +G Sbjct: 28 PEETIIEEAEPSLEQQLAQLQMQAHE---QGYQAGIAEGRQQGHKQGYQEGLAQGLEQGL 84 Query: 81 A 81 A Sbjct: 85 A 85
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 28.8 bits (64), Expect = 0.033 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 22/111 (19%) Query: 41 GYSEQDPEQWVEKTIQALKELTEKSGVPRDEIEGLSFSGQMHG-LVLLDENLQVIRNAI- 98 GYSE + +W E +A D +SF G +G V+ + + + A Sbjct: 73 GYSE-EKGEWKEAEGKAYF-----VNGSTDGYLKVSFFGPFYGSYVVFELDRENYSYAFV 126 Query: 99 -------LWNDTRTTEQCKKIDQVLGGKLLEITKNPALEGFTLPKILWVQQ 142 LW +RT + I K +E++K GF ++++VQQ Sbjct: 127 SGPNTEYLWLLSRTPTVERGILD----KFIEMSKE---RGFDTNRLIYVQQ 170
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.1 bits (99), Expect = 3e-06 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 4/164 (2%) Query: 26 GVISGALLFIKNDLHLT---SWTEGIVVSSILFGCMIGAAISGAMSDRWGRKKVVLIAAS 82 G+I L + DL + + GI+++ A + GA+SDR+GR+ V+L++ + Sbjct: 22 GLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLA 81 Query: 83 VFCIGALGTALAPNTGVLILFRVILGLAVGSASTLVPMYLSEMAPTSIRGALSSLNQLMI 142 + A AP VL + R++ G+ G+ + Y++++ R Sbjct: 82 GAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACF 140 Query: 143 MTGILLAYIINYVFAATGSWRWMLGFALIPGLLMLIGMLFLPES 186 G++ ++ + A + GL L G LPES Sbjct: 141 GFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 42.9 bits (100), Expect = 6e-07 Identities = 18/55 (32%), Positives = 35/55 (63%) Query: 215 IKNLDPQEADQILRLPNSFYDKGYKKGKEEGKEEGKEEGKEEGLKEGLKEGERRA 269 I+ +P Q+ +L +++GY+ G EG+++G ++G +EGL +GL++G A Sbjct: 33 IEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEA 87
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 43.3 bits (102), Expect = 2e-06 Identities = 37/203 (18%), Positives = 67/203 (33%), Gaps = 45/203 (22%) Query: 160 HLKDVLDSLSGKKLPPVRKKRQLQPDEYSFEADFSMILGH----RHAKKVLEIAAAGSHN 215 L +++ + P R+ +L+ D ++G + +VL Sbjct: 107 DLTELIGIIGRALAEPKRRPSKLEDDSQDGMP----LVGRSAAMQEIYRVLARLMQTDLT 162 Query: 216 VLMYGPPGSGKSMLAEAFPSILPPLSETSSFEVAGLYQLANVKRGFHRKPPFRAPHHASS 275 +++ G G+GK ++A A L+ + G PF A + A+ Sbjct: 163 LMITGESGTGKELVARA------------------LHDYGKRRNG-----PFVAINMAAI 199 Query: 276 AVSLVG------------GGSRPHPGEISLAHHGVLFLDEMAEFPKRTLDMLRQPLENGK 323 L+ G G A G LFLDE+ + P L + L+ G Sbjct: 200 PRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQG- 258 Query: 324 VTISRAASTVTYPARFIMLAAMN 346 + + ++AA N Sbjct: 259 -EYTTVGGRTPIRSDVRIVAATN 280
>PF05043#Transcriptional activator Length = 493 Score = 31.8 bits (72), Expect = 0.008 Identities = 74/482 (15%), Positives = 159/482 (32%), Gaps = 67/482 (13%) Query: 3 SNRQKQILWLLQKSAGPLNAKAIGERLGISDRTVREEIRQIQQKSDALGVKLKVLRGKGY 62 S+RQ ++L LL + + + E L ++R V++++ +K Sbjct: 9 SHRQLELLELLFEHKRWFHRSELAELLNCTERAVKDDLSH-----------VKSAFPDLI 57 Query: 63 LLEKVDYRRLLQLEENGLFAEQEERVKYILK--------RLLLEKDYVRLEDLEADLYVS 114 + R++ + ++ E + K + + + E + + Y+S Sbjct: 58 FHSSTNGIRIINTD----DSDIEMVYHHFFKHSTHFSILEFIFFNEGCQAESICKEFYIS 113 Query: 115 KSTLHTDLKKVRKILKK-YDLTLANRPHYGTKVEGGEFKKRLCLADSIFGWQNKPGQQNT 173 S+L+ + ++ K++K+ + ++ P ++ G E R A + K Sbjct: 114 SSSLYRIISQINKVIKRQFQFEVSLTP---VQIIGNERDIRYFFAQY---FSEKYYFLEW 167 Query: 174 PFNQDLFQKVKQILIRIISKYRIRFSDIELQNLATHITLACKRIEDGFTIEPLPFHFKES 233 PF + + Q+L + + + + L + RI+ G +E + Sbjct: 168 PFENFSSEPLSQLLELVYKETSFPMNLSTHRMLKLLLVTNLYRIKFGHFME-----VDKD 222 Query: 234 YTFER--------KVAKEITGEVEKSVGIPFPPAEIDYILVHLLGTKLISKHVARQVSDE 285 ++ + + + E I + + V + Sbjct: 223 SFNDQSLDFLMQAEGIEGVAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVK 282 Query: 286 IDDIVNAILHEL-----KTQFRWDFSNDKEFRNGLTLHLHTSLNRMKYKMHI-----RNP 335 D V H L + ++ + + LH L R + + Sbjct: 283 KDSYVEKSYHLLSDFIDQISVKYQIEIENKDNLIWHLHNTAHLYRQELFTEFILFDQKGN 342 Query: 336 LLNEMKTKFPIAFEGAVAAGECIEAVIHKKVNEDEISYLAI-------HIAIALERMRKK 388 + + FP + + +++L+ H+ I L + + K Sbjct: 343 TIRNFQNIFPKFVSDVKKELSHYLETLEVCSSSMMVNHLSYTFITHTKHLVINLLQNQPK 402 Query: 389 KRVLVVCATGLGSAK----ILSYQLENRFANEMEIVDTISYYTLSDYDLSRVDLIVSTIM 444 +VLV+ AK LSY N F E+E+ + S D S D+I+S + Sbjct: 403 LKVLVMSNFDQYHAKFVAETLSYYCSNNF--ELEVWTELELSKESLED-SPYDIIISNFI 459 Query: 445 IP 446 IP Sbjct: 460 IP 461
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.0 bits (78), Expect = 9e-04 Identities = 40/243 (16%), Positives = 81/243 (33%), Gaps = 34/243 (13%) Query: 144 IYAVFMIFGPVIGTFAYQ---RLGIDLSITITGVAFLLSAAALSFIPRDEKVKKAENATN 200 + M+ GPV+G + + G+ FL F+ + + Sbjct: 139 CFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGC----FLLPESHKGERRPLRR 194 Query: 201 IFQEMKSGVRYVLAKKELKLLGCGFLTAGLGVGLIQPMNIFLVTDRLGLPKEYLQWLVMV 260 + R+ + L F L + + + DR W Sbjct: 195 EALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFH-------WDATT 247 Query: 261 NGIGMIAGGAFSMFF--------SRSVSPLKLLFTGLLANALGLAVIGASTSLWLTLAAE 312 GI + A G + + + L G++A+ G ++ +T W+ Sbjct: 248 IGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIM 307 Query: 313 LV---SGLFLPSIQIGISTMVLQNTEADYIGRVNGTLYPL-----FTGAMVITMSLAGLV 364 ++ G+ +P++Q +S V + + G++ G+L L G ++ T A + Sbjct: 308 VLLASGGIGMPALQAMLSRQVDEERQ----GQLQGSLAALTSLTSIVGPLLFTAIYAASI 363 Query: 365 KTW 367 TW Sbjct: 364 TTW 366
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 29.4 bits (66), Expect = 0.020 Identities = 20/114 (17%), Positives = 51/114 (44%), Gaps = 8/114 (7%) Query: 48 DPYLRGRMEDVKSYIPPFQLNDVIVSGVIGQVVASQSAQFKKGDIVIGTLGWETYSIAHE 107 + Y++ R D++ ++ ++ +IG S + ++ I+ L + ++ Sbjct: 121 NEYMKERAADIR------DVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNK 174 Query: 108 KTIRKLDPDLAPITTHLGIIGMT-GLTAYFGLLDIGK-PKAGETVVVSGAAGAV 159 + ++ D+ T+H I+ + + A G ++ + + G+ V+V G G V Sbjct: 175 QFVKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIV 228
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 30.8 bits (69), Expect = 0.008 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 13/86 (15%) Query: 100 QWGTEAQKQKYLVPQAK--GEKIGAFGLTEPDAGSDVAGIGTTAEKDGDFYILNGQKTWI 157 +W K KY VP G + G T D GSD+ D +FY LNG+ Sbjct: 181 EWDGYRFKVKYFVPLTDLWGGSLSYIGFTNFDWGSDLG--------DDNFYDLNGKHART 232 Query: 158 SLCDVADHFLVFAYTDKAKKHHGISA 183 S + H L Y A H+ I A Sbjct: 233 SNSIASSHILALNY---AHWHYSIVA 255