charite.christo.blast
Class Blaster_local_NCBI_gapped_PSI

java.lang.Object
  charite.christo.blast.AbstractBlaster
      charite.christo.blast.Blaster_local_Wu
          charite.christo.blast.Blaster_local_NCBI
              charite.christo.blast.Blaster_local_NCBI_gapped_PSI

All Implemented Interfaces:

SequenceBlaster, Disposable, HasControlPanel, java.awt.event.ActionListener, java.util.EventListener

public class Blaster_local_NCBI_gapped_PSI
extends Blaster_local_NCBI

HELP SEE_CLASS:Blaster_local_NCBI

Field Summary

Fields inherited from class charite.christo.blast.AbstractBlaster

_mapDB, BUT_IN_BROWSER, BUT_TXT, BUT_TXTe, BUT_XML, BUT_XMLb, button

Fields inherited from interface charite.christo.blast.SequenceBlaster

DATABASES_FULL_LIST, DATABASES_NUCLEOTIDES

Fields inherited from interface charite.christo.Disposable

NONE

Constructor Summary

Blaster_local_NCBI_gapped_PSI()

Method Summary

java.lang.String

getCommandLine()

Methods inherited from class charite.christo.blast.Blaster_local_NCBI

getAvailableMatrices

Methods inherited from class charite.christo.blast.Blaster_local_Wu

computeIt, getAvailableDBs, setAdditionalOptions, setProgramName, setShellVariableBLASTDB

Methods inherited from class charite.christo.blast.AbstractBlaster

actionPerformed, button, cachedResultsNotOlderThanSec, cacheSK, compute, defineParameters, dispose, enableDisable, getAvailableDatabases, getBlastProgram, getControlPanel, getDatabase, getMatrix, getNumberOfAlignments, getPrgParas, getQuery, getQuerySequence, getResultXml, getSensitivity, getSharedInstance, isAAQuery, isDisposed, log, setAAQuerySequence, setDatabase, setMatrix, setNTQuerySequence, setNumberOfAlignments, setSensitivity, setSharedInstance, setUrlResultHtml, skipDatabases

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Blaster_local_NCBI_gapped_PSI

public Blaster_local_NCBI_gapped_PSI()

Method Detail

getCommandLine

public java.lang.String getCommandLine()

Overrides:

getCommandLine in class Blaster_local_Wu