charite.christo.protein
Class FetchSeqs

java.lang.Object
  charite.christo.protein.FetchSeqs

public final class FetchSeqs
extends java.lang.Object

Field Summary

static java.lang.String	CMD_WSDBFETCH_ERROR
static java.lang.String	CMD_WSDBFETCH_SEND_QUERY
static java.lang.String	CMD_WSDBFETCH_SUCCESS
static java.lang.String[]	DATABASES
static java.lang.String	DB_EMBL
static java.lang.String	DB_NCBI_AA
static java.lang.String	DB_UNIPARC
static java.lang.String	DB_UNIPROT
static java.lang.String	NCBI_NT
static long	SKIP_EXISTING

Method Summary

static java.io.File	dbColonID2file(java.lang.String entry0)
static void	download(long options, java.lang.String[] tokens)
static void	download(java.lang.String database, java.lang.String[] IDs, java.lang.String format0)
static java.lang.Thread	thread_download(long options, java.lang.String[] tokens)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SKIP_EXISTING

public static final long SKIP_EXISTING

See Also:

Constant Field Values

CMD_WSDBFETCH_SEND_QUERY

public static final java.lang.String CMD_WSDBFETCH_SEND_QUERY

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Constant Field Values

CMD_WSDBFETCH_ERROR

public static final java.lang.String CMD_WSDBFETCH_ERROR

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Constant Field Values

CMD_WSDBFETCH_SUCCESS

public static final java.lang.String CMD_WSDBFETCH_SUCCESS

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Constant Field Values

DB_EMBL

public static final java.lang.String DB_EMBL

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Constant Field Values

DB_UNIPARC

public static final java.lang.String DB_UNIPARC

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Constant Field Values

DB_UNIPROT

public static final java.lang.String DB_UNIPROT

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Constant Field Values

DB_NCBI_AA

public static final java.lang.String DB_NCBI_AA

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Constant Field Values

NCBI_NT

public static final java.lang.String NCBI_NT

See Also:

Constant Field Values

DATABASES

public static final java.lang.String[] DATABASES

Method Detail

dbColonID2file

public static java.io.File dbColonID2file(java.lang.String entry0)

thread_download

public static java.lang.Thread thread_download(long options,
                                               java.lang.String[] tokens)

download

public static void download(long options,
                            java.lang.String[] tokens)

download

public static void download(java.lang.String database,
                            java.lang.String[] IDs,
                            java.lang.String format0)