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'STRAP:
multiple sequence alignments
'
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All Classes
Hierarchy For Package charite.christo.protein
Package Hierarchies:
All Packages
Class Hierarchy
java.lang.Object
javax.swing.border.AbstractBorder (implements javax.swing.border.Border, java.io.Serializable)
charite.christo.
ChRenderer
(implements javax.swing.ListCellRenderer, charite.christo.
PaintHook
, charite.christo.
ProcessEv
, javax.swing.table.TableCellEditor, javax.swing.table.TableCellRenderer, javax.swing.tree.TreeCellRenderer)
charite.christo.protein.
DAS
(implements java.util.Comparator<T>)
charite.christo.protein.
AbstractPredictionFromAminoacidSequence
(implements charite.christo.
Disposable
, charite.christo.protein.
PredictionFromAminoacidSequence
)
charite.christo.
AbstractProxy
(implements charite.christo.
HasPropertyMap
)
charite.christo.protein.
AbstractProteinViewerProxy
(implements charite.christo.
ChRunnable
, charite.christo.protein.
ProteinViewer
)
charite.christo.protein.
ChAstexPROXY
(implements charite.christo.
HasControlPanel
)
charite.christo.protein.
ChJmolPROXY
(implements charite.christo.protein.
ProteinViewer
)
charite.christo.protein.
AbstractValueOfResidue
(implements charite.christo.
Colored
, charite.christo.protein.
ValueOfResidue
)
charite.christo.protein.
AbstractVisibleIn123
(implements charite.christo.
HasImage
, charite.christo.
HasPropertyMap
, charite.christo.
HasWeakRef
, charite.christo.protein.
VisibleIn123
)
charite.christo.protein.
BasicResidueSelection
(implements charite.christo.
HasName
, charite.christo.
HasRenderer
, charite.christo.protein.
ResidueSelection
)
charite.christo.protein.
Backtranslate
charite.christo.protein.
Backtranslate.Codonusage
charite.christo.protein.
Bl2seq
(implements charite.christo.
HasNativeExec
)
charite.christo.protein.
Bl2seq.Hit
charite.christo.protein.
Blosum
charite.christo.protein.
ChAlignUtils
charite.christo.protein.
ChAstex
(implements charite.christo.
ChRunnable
, astex.MoleculeRendererListener, charite.christo.
ProcessEv
, charite.christo.protein.
ProteinViewer
)
charite.christo.protein.
ChJmol
(implements charite.christo.
ChRunnable
, org.jmol.api.JmolCallbackListener, charite.christo.
PaintHook
, charite.christo.protein.
ProteinViewer
)
charite.christo.protein.
ChSoapEBI
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
javax.swing.JButton (implements javax.accessibility.Accessible)
charite.christo.
ChButton
(implements charite.christo.
ChRunnable
, charite.christo.
HasModiCount
, charite.christo.
HasRenderer
, charite.christo.
ProcessEv
)
charite.christo.protein.
ProteinLabel
javax.swing.JComboBox (implements javax.accessibility.Accessible, java.awt.event.ActionListener, java.awt.ItemSelectable, javax.swing.event.ListDataListener)
charite.christo.
ChCombo
(implements charite.christo.
HasModiCount
, charite.christo.
IsEnabled
, charite.christo.
ProcessEv
, java.lang.Runnable)
charite.christo.protein.
ShadingAA
javax.swing.JPanel (implements javax.accessibility.Accessible)
charite.christo.
ChPanel
(implements javax.swing.Scrollable)
charite.christo.protein.
Protein3d
(implements charite.christo.
ChRunnable
, charite.christo.
Disposable
, charite.christo.
PaintHook
, charite.christo.
ProcessEv
, charite.christo.
TooltipProvider
)
charite.christo.protein.
CrudeSequenceDisSimilarity
(implements charite.christo.protein.
SequenceDisSimilarity
)
charite.christo.protein.
CrudeSequenceSimilarity
charite.christo.protein.
DAS.Capability
charite.christo.protein.
DAS.Coordinates
charite.christo.protein.
DAS.Entry
(implements java.lang.Runnable)
charite.christo.protein.
DSSP_Parser
(implements charite.christo.protein.
ProteinParser
)
charite.christo.protein.
FetchSeqs
charite.christo.protein.
FindUniprotID
charite.christo.protein.
Gaps2Columns
charite.christo.protein.
HeteroCompound
(implements charite.christo.
HasPropertyMap
, charite.christo.
HasRendererModiCount
, charite.christo.
HasWeakRef
)
charite.christo.protein.
Matrix3D
(implements charite.christo.
HasModiCount
)
charite.christo.protein.
MergeAlignments
charite.christo.protein.
MultiFromPairAligner
(implements charite.christo.
CanBeStopped
, charite.christo.
HasControlPanel
, charite.christo.protein.
NeedsProteins
, charite.christo.protein.
SequenceAlignerSorting
)
charite.christo.protein.
MultipleSequenceParser
charite.christo.protein.
NumberedSequence_Parser
(implements charite.christo.protein.
ProteinParser
)
charite.christo.protein.
PDB_Parser
(implements charite.christo.protein.
ProteinParser
)
charite.christo.protein.
PDB_Parser_SeqRes
charite.christo.protein.
Picr_EBI
charite.christo.protein.
PredictSubcellularLocation.Prediction
charite.christo.protein.
Protein
(implements java.awt.event.ActionListener, charite.christo.
ChRunnable
, charite.christo.
Colored
, charite.christo.
HasImage
, charite.christo.
HasName
, charite.christo.
HasPropertyMap
, charite.christo.protein.
HasProtein
, charite.christo.
HasRendererModiCount
, charite.christo.
HasWeakRef
)
charite.christo.protein.
Protein3d.PView
(implements charite.christo.protein.
ProteinViewer
)
charite.christo.protein.
Protein3dUtils
(implements charite.christo.
ChRunnable
)
charite.christo.protein.
ProteinMC
charite.christo.protein.
ProteinUtils
(implements java.util.Comparator<T>)
charite.christo.protein.
ProteinWriter1
(implements charite.christo.protein.
ProteinWriter
)
charite.christo.protein.
Pymol
(implements java.awt.event.ActionListener, charite.christo.
ChRunnable
, charite.christo.protein.
ProteinViewer
)
charite.christo.protein.
SBD_Parser
(implements charite.christo.protein.
ProteinParser
)
charite.christo.protein.
Selection3D
(implements java.lang.Comparable<T>)
charite.christo.protein.
SequenceForPdbID
charite.christo.protein.
SimilarPdb_blastEBI
(implements charite.christo.protein.
SimilarPdbFinder
)
charite.christo.protein.
SimilarPdbFinder.Result
(implements charite.christo.
HasRenderer
)
charite.christo.protein.
SingleFastaParser
(implements charite.christo.protein.
ProteinParser
)
charite.christo.protein.
StrapEvent
(implements java.lang.Runnable)
charite.christo.protein.
StupidParser
(implements charite.christo.protein.
ProteinParser
)
charite.christo.protein.
Superimpose3D.Result
charite.christo.protein.
SwissHeaderParser
java.lang.Thread (implements java.lang.Runnable)
charite.christo.protein.
ReferenceSequence
charite.christo.protein.
XML_SequenceParser
(implements charite.christo.protein.
ProteinParser
)
Interface Hierarchy
charite.christo.
ChRunnable
charite.christo.protein.
ProteinAlignment
charite.christo.
Colored
charite.christo.protein.
VisibleIn123
charite.christo.
CommandInterpreter
charite.christo.protein.
ProteinViewer
(also extends charite.christo.
Disposable
, charite.christo.protein.
HasProtein
)
charite.christo.
Disposable
charite.christo.protein.
ProteinViewer
(also extends charite.christo.
CommandInterpreter
, charite.christo.protein.
HasProtein
)
charite.christo.
HasModiCount
charite.christo.protein.
ValueOfProtein
(also extends charite.christo.protein.
HasProtein
)
charite.christo.protein.
ValueOfResidue
(also extends charite.christo.protein.
HasProtein
)
charite.christo.protein.
HasProtein
charite.christo.protein.
ProteinViewer
(also extends charite.christo.
CommandInterpreter
, charite.christo.
Disposable
)
charite.christo.protein.
ResidueSelection
charite.christo.protein.
ValueOfProtein
(also extends charite.christo.
HasModiCount
)
charite.christo.protein.
ValueOfResidue
(also extends charite.christo.
HasModiCount
)
charite.christo.protein.
NeedsProteins
charite.christo.protein.
SequenceAligner3D
(also extends charite.christo.protein.
SequenceAligner
)
charite.christo.protein.
Superimpose3D
charite.christo.protein.
PhylogeneticTree
charite.christo.protein.
PredictionFromAminoacidSequence
charite.christo.protein.
CoiledCoil_Predictor
charite.christo.protein.
SecondaryStructure_Predictor
charite.christo.protein.
TransmembraneHelix_Predictor
charite.christo.protein.
PredictSubcellularLocation
charite.christo.protein.
ProteinParser
charite.christo.protein.
ProteinWriter
charite.christo.protein.
SelectorOfNucleotides
charite.christo.protein.
SequenceAligner
charite.christo.protein.
SequenceAligner3D
(also extends charite.christo.protein.
NeedsProteins
)
charite.christo.protein.
SequenceAlignerSorting
charite.christo.protein.
SequenceAlignerTakesProfile
charite.christo.protein.
SequenceDisSimilarity
charite.christo.protein.
SimilarPdbFinder
charite.christo.protein.
StrapListener
Overview
Package
Class
Tree
Deprecated
Index
Help
'STRAP:
multiple sequence alignments
'
PREV
NEXT
FRAMES
NO FRAMES
All Classes
'The most important classes are StrapAlign, Protein and StrapEvent.'