'STRAP:multiple sequence alignments '

charite.christo.protein
Class Selection3D

java.lang.Object
  extended by charite.christo.protein.Selection3D
All Implemented Interfaces:
java.lang.Comparable

public class Selection3D
extends java.lang.Object
implements java.lang.Comparable


Field Summary
static Selection3D[] NONE
           
 
Constructor Summary
Selection3D(long options, int first, int last, char insertion, char chain, java.lang.String[] atoms)
           
Selection3D(long options, java.lang.String name, char chain, java.lang.String[] atoms)
           
Selection3D(Selection3D s)
           
 
Method Summary
 int compareTo(java.lang.Object o)
           
 java.lang.String[] getAtoms()
           
 char getChain()
           
 int getFirst()
           
 char getInsertion()
           
 int getLast()
           
 java.lang.String getNativeAtoms()
           
 long getOptions()
           
 java.lang.String getResidueName()
           
 Selection3D newInstanceChangeAtoms(java.lang.String[] atoms)
           
 Selection3D newInstanceNativeAtoms(java.lang.String atoms)
           
 java.lang.String toString()
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

NONE

public static final Selection3D[] NONE
Constructor Detail

Selection3D

public Selection3D(Selection3D s)

Selection3D

public Selection3D(long options,
                   int first,
                   int last,
                   char insertion,
                   char chain,
                   java.lang.String[] atoms)

Selection3D

public Selection3D(long options,
                   java.lang.String name,
                   char chain,
                   java.lang.String[] atoms)
Method Detail

toString

public java.lang.String toString()
Overrides:
toString in class java.lang.Object

getOptions

public long getOptions()

getFirst

public int getFirst()

getLast

public int getLast()

getInsertion

public char getInsertion()

getChain

public char getChain()

getAtoms

public java.lang.String[] getAtoms()

getResidueName

public java.lang.String getResidueName()

getNativeAtoms

public java.lang.String getNativeAtoms()

newInstanceChangeAtoms

public Selection3D newInstanceChangeAtoms(java.lang.String[] atoms)

newInstanceNativeAtoms

public Selection3D newInstanceNativeAtoms(java.lang.String atoms)

compareTo

public int compareTo(java.lang.Object o)
Specified by:
compareTo in interface java.lang.Comparable

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'