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'STRAP:multiple sequence alignments '
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charite.christo.protein
Interface SequenceAligner3D

All Superinterfaces:
NeedsProteins, SequenceAligner
All Known Implementing Classes:
Aligner3D_Mapsci, Aligner3D_Matt, Aligner3D_Mustang, Aligner3D_Smolign, Superimpose_CE, Superimpose_CEPROXY, Superimpose_native_CE, Superimpose_TM_align
public interface SequenceAligner3D
extends SequenceAligner, NeedsProteins

Field Summary
 
Fields inherited from interface charite.christo.protein.SequenceAligner
OPTION_CHECK_PERFECT_MATCH, OPTION_NOT_TO_SECURITY_LIST, OPTION_USE_SECONDARY_STRUCTURE, PROPERTY_LOCAL_ALIGNMENT, PROPERTY_ONLY_TWO_SEQUENCES, SCORE_FOR_PERFECT_MATCH
 
Method Summary
 
Methods inherited from interface charite.christo.protein.SequenceAligner
compute, getAlignedSequences, getOptions, getPropertyFlags, getSequences, setOptions, setSequences
 
Methods inherited from interface charite.christo.protein.NeedsProteins
setProteins
 

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'STRAP:multiple sequence alignments '
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'The most important classes are StrapAlign, Protein and StrapEvent.'